Query 039757
Match_columns 415
No_of_seqs 465 out of 1505
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 22:32:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-35 4.4E-40 285.7 27.6 260 144-406 282-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.2E-33 1.8E-37 267.5 29.7 352 23-404 82-504 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.6E-30 1.2E-34 238.9 18.6 213 42-306 7-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-27 6.2E-32 216.5 35.1 351 3-404 13-368 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-28 1.5E-32 220.5 30.1 326 31-405 5-335 (388)
6 4g26_A Pentatricopeptide repea 100.0 1.6E-29 5.5E-34 234.5 18.2 204 6-239 7-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 5.3E-25 1.8E-29 204.1 31.2 350 4-400 7-405 (450)
8 2gw1_A Mitochondrial precursor 99.9 4.6E-24 1.6E-28 201.2 27.8 375 2-406 19-480 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.1E-23 3.7E-28 195.3 27.8 320 67-405 25-359 (450)
10 3fp2_A TPR repeat-containing p 99.9 3.6E-22 1.2E-26 189.3 28.1 356 24-406 24-493 (537)
11 3ieg_A DNAJ homolog subfamily 99.9 2.1E-21 7.2E-26 174.0 30.3 321 24-389 2-354 (359)
12 2gw1_A Mitochondrial precursor 99.9 1.5E-21 5.3E-26 183.8 27.5 353 24-405 5-445 (514)
13 3ieg_A DNAJ homolog subfamily 99.9 1.1E-20 3.8E-25 169.3 28.2 321 67-406 2-337 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.5E-20 5.2E-25 178.1 23.1 353 2-377 38-498 (537)
15 3hym_B Cell division cycle pro 99.9 6.7E-19 2.3E-23 155.8 29.6 286 22-356 19-320 (330)
16 3hym_B Cell division cycle pro 99.9 1.1E-19 3.8E-24 160.9 23.2 287 67-392 21-322 (330)
17 1fch_A Peroxisomal targeting s 99.8 1.5E-19 5.2E-24 162.7 18.4 303 35-401 35-356 (368)
18 3mkr_A Coatomer subunit epsilo 99.8 6.7E-18 2.3E-22 146.4 26.1 196 191-403 66-263 (291)
19 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.5E-23 154.5 20.0 285 4-333 18-307 (449)
20 4g1t_A Interferon-induced prot 99.8 2.8E-17 9.7E-22 153.1 29.9 370 21-415 47-470 (472)
21 3mkr_A Coatomer subunit epsilo 99.8 1.2E-17 4E-22 144.9 23.3 274 75-398 6-288 (291)
22 2xm6_A Protein corresponding t 99.8 4.1E-16 1.4E-20 146.0 34.8 344 24-406 38-434 (490)
23 1fch_A Peroxisomal targeting s 99.8 3.9E-18 1.3E-22 153.5 20.1 263 24-334 63-356 (368)
24 4eqf_A PEX5-related protein; a 99.8 3.8E-18 1.3E-22 153.5 18.7 277 24-335 64-354 (365)
25 4eqf_A PEX5-related protein; a 99.8 2.6E-18 8.8E-23 154.6 17.2 270 67-400 64-352 (365)
26 3cv0_A Peroxisome targeting si 99.8 1.7E-17 5.7E-22 146.6 20.8 264 24-337 20-315 (327)
27 2xm6_A Protein corresponding t 99.8 4.9E-16 1.7E-20 145.4 31.9 359 2-401 56-468 (490)
28 2ooe_A Cleavage stimulation fa 99.8 4.6E-16 1.6E-20 147.1 30.8 182 208-405 304-493 (530)
29 3cv0_A Peroxisome targeting si 99.8 6.3E-18 2.1E-22 149.4 16.4 276 67-403 20-314 (327)
30 1b89_A Protein (clathrin heavy 99.8 2.7E-18 9.3E-23 152.6 11.4 278 80-398 15-305 (449)
31 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-18 8.2E-23 164.9 6.0 152 23-179 125-286 (1134)
32 1xi4_A Clathrin heavy chain; a 99.7 3.4E-14 1.2E-18 140.8 33.4 338 6-402 965-1307(1630)
33 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.8E-22 159.1 9.2 117 186-303 123-245 (1134)
34 2pl2_A Hypothetical conserved 99.7 8.3E-16 2.9E-20 127.3 16.6 200 187-403 2-213 (217)
35 1xi4_A Clathrin heavy chain; a 99.7 4.4E-14 1.5E-18 140.0 30.7 347 2-397 998-1377(1630)
36 1xnf_A Lipoprotein NLPI; TPR, 99.7 2E-15 6.8E-20 129.8 18.2 239 117-398 19-269 (275)
37 2ooe_A Cleavage stimulation fa 99.7 3.1E-14 1E-18 134.6 26.2 182 208-405 256-455 (530)
38 3uq3_A Heat shock protein STI1 99.7 6.1E-15 2.1E-19 125.3 19.4 224 24-288 4-236 (258)
39 3uq3_A Heat shock protein STI1 99.7 5.6E-15 1.9E-19 125.6 18.2 225 134-405 5-237 (258)
40 2ho1_A Type 4 fimbrial biogene 99.7 1.9E-14 6.7E-19 122.0 21.4 202 190-406 37-240 (252)
41 3u4t_A TPR repeat-containing p 99.6 5.6E-14 1.9E-18 120.5 23.7 238 25-297 3-257 (272)
42 2vq2_A PILW, putative fimbrial 99.6 5.7E-14 2E-18 116.6 21.5 202 189-405 7-212 (225)
43 4g1t_A Interferon-induced prot 99.6 2.8E-14 9.5E-19 132.8 21.4 349 3-381 65-470 (472)
44 3u4t_A TPR repeat-containing p 99.6 1.6E-14 5.6E-19 123.9 18.2 180 193-389 77-269 (272)
45 3sf4_A G-protein-signaling mod 99.6 9.3E-15 3.2E-19 133.0 17.5 301 21-392 5-364 (406)
46 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-14 4.1E-19 124.9 16.6 245 3-282 19-269 (275)
47 2pl2_A Hypothetical conserved 99.6 2E-14 6.7E-19 119.1 17.1 196 133-368 4-212 (217)
48 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-13 6.5E-18 115.8 23.5 207 68-299 37-247 (252)
49 2vq2_A PILW, putative fimbrial 99.6 1.4E-13 4.9E-18 114.2 21.7 211 24-299 7-220 (225)
50 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-14 6.3E-19 121.3 16.2 203 187-406 20-224 (243)
51 1ouv_A Conserved hypothetical 99.6 3.6E-13 1.2E-17 115.7 24.3 225 133-406 5-253 (273)
52 2h6f_A Protein farnesyltransfe 99.6 7.1E-14 2.4E-18 125.2 19.9 238 25-299 97-357 (382)
53 2h6f_A Protein farnesyltransfe 99.6 5.4E-14 1.9E-18 126.0 18.7 246 103-388 97-366 (382)
54 4a1s_A PINS, partner of inscut 99.6 2.5E-14 8.4E-19 130.7 16.8 272 70-404 50-372 (411)
55 2q7f_A YRRB protein; TPR, prot 99.6 2.5E-14 8.6E-19 120.4 14.2 198 23-288 21-222 (243)
56 3ro2_A PINS homolog, G-protein 99.6 6.9E-14 2.4E-18 123.5 16.8 274 69-405 6-333 (338)
57 1ouv_A Conserved hypothetical 99.6 9.8E-13 3.4E-17 113.0 23.4 223 24-289 5-252 (273)
58 3e4b_A ALGK; tetratricopeptide 99.6 5.9E-13 2E-17 122.9 22.8 335 31-406 9-389 (452)
59 4a1s_A PINS, partner of inscut 99.6 7E-14 2.4E-18 127.6 16.5 278 24-372 47-374 (411)
60 3vtx_A MAMA; tetratricopeptide 99.6 2.3E-13 7.9E-18 109.4 17.2 167 225-406 4-172 (184)
61 3sf4_A G-protein-signaling mod 99.6 6.7E-14 2.3E-18 127.3 15.8 201 194-404 91-336 (406)
62 4abn_A Tetratricopeptide repea 99.5 8.6E-14 2.9E-18 129.2 15.5 198 188-402 100-319 (474)
63 3ro2_A PINS homolog, G-protein 99.5 3.1E-13 1.1E-17 119.3 18.2 277 25-372 5-334 (338)
64 2ond_A Cleavage stimulation fa 99.5 3.3E-12 1.1E-16 111.7 24.0 236 24-294 7-274 (308)
65 3ulq_A Response regulator aspa 99.5 3.4E-12 1.2E-16 115.4 21.7 308 35-372 22-370 (383)
66 3nf1_A KLC 1, kinesin light ch 99.5 5.2E-13 1.8E-17 116.7 15.7 249 67-372 26-309 (311)
67 3q15_A PSP28, response regulat 99.5 1.6E-11 5.4E-16 110.8 25.4 321 21-370 6-365 (378)
68 3nf1_A KLC 1, kinesin light ch 99.5 5.5E-14 1.9E-18 123.0 8.6 249 133-405 26-308 (311)
69 3ulq_A Response regulator aspa 99.5 6.1E-13 2.1E-17 120.3 14.1 294 78-406 22-370 (383)
70 1hz4_A MALT regulatory protein 99.5 6.8E-11 2.3E-15 106.3 27.4 171 225-404 134-322 (373)
71 3e4b_A ALGK; tetratricopeptide 99.5 9.6E-12 3.3E-16 114.7 21.8 358 3-405 17-422 (452)
72 4gyw_A UDP-N-acetylglucosamine 99.5 1.2E-12 4E-17 126.6 16.2 168 222-404 5-174 (723)
73 2ond_A Cleavage stimulation fa 99.5 1.7E-11 5.7E-16 107.3 22.0 222 151-407 33-273 (308)
74 4abn_A Tetratricopeptide repea 99.5 1E-12 3.4E-17 122.1 15.0 211 41-285 84-318 (474)
75 3mv2_B Coatomer subunit epsilo 99.4 6.7E-11 2.3E-15 100.9 23.3 240 147-407 26-285 (310)
76 3vtx_A MAMA; tetratricopeptide 99.4 9.6E-12 3.3E-16 99.8 17.3 169 189-374 4-174 (184)
77 3as5_A MAMA; tetratricopeptide 99.4 4E-12 1.4E-16 101.9 14.9 167 226-407 8-176 (186)
78 4e6h_A MRNA 3'-END-processing 99.4 6.7E-10 2.3E-14 106.3 29.8 144 7-162 51-222 (679)
79 4i17_A Hypothetical protein; T 99.4 8.9E-11 3E-15 97.7 19.7 199 188-404 5-209 (228)
80 3q15_A PSP28, response regulat 99.3 3.7E-11 1.3E-15 108.3 17.0 308 67-404 9-365 (378)
81 3as5_A MAMA; tetratricopeptide 99.3 8.8E-11 3E-15 93.9 17.5 170 190-376 8-179 (186)
82 4i17_A Hypothetical protein; T 99.3 7.1E-11 2.4E-15 98.3 15.5 154 223-391 4-169 (228)
83 3edt_B KLC 2, kinesin light ch 99.3 1.4E-10 4.7E-15 99.6 17.0 235 79-370 12-281 (283)
84 4gyw_A UDP-N-acetylglucosamine 99.3 7.8E-11 2.7E-15 113.9 16.4 167 189-372 8-176 (723)
85 3edt_B KLC 2, kinesin light ch 99.3 1.6E-11 5.3E-16 105.6 9.8 206 189-404 42-281 (283)
86 3qky_A Outer membrane assembly 99.3 3.2E-10 1.1E-14 96.5 17.2 205 187-395 12-252 (261)
87 1hz4_A MALT regulatory protein 99.2 2.2E-09 7.5E-14 96.4 23.0 274 28-336 17-321 (373)
88 3qky_A Outer membrane assembly 99.2 4.1E-10 1.4E-14 95.8 15.7 173 222-406 11-226 (261)
89 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.1E-09 3.7E-14 90.9 17.5 182 227-410 5-219 (225)
90 1qqe_A Vesicular transport pro 99.2 9.3E-10 3.2E-14 95.3 17.0 248 85-373 2-272 (292)
91 3mv2_B Coatomer subunit epsilo 99.2 1.3E-08 4.6E-13 86.7 23.0 248 75-375 20-287 (310)
92 4e6h_A MRNA 3'-END-processing 99.1 5.2E-08 1.8E-12 93.3 27.8 344 41-406 48-535 (679)
93 1qqe_A Vesicular transport pro 99.1 5.6E-10 1.9E-14 96.7 13.0 198 197-403 44-268 (292)
94 2fo7_A Synthetic consensus TPR 99.1 9.5E-10 3.3E-14 82.6 11.9 88 318-405 45-133 (136)
95 3rjv_A Putative SEL1 repeat pr 99.1 2E-08 6.9E-13 82.3 19.8 176 208-407 4-200 (212)
96 3qou_A Protein YBBN; thioredox 99.1 2E-09 6.8E-14 92.9 14.3 166 223-403 114-283 (287)
97 2r5s_A Uncharacterized protein 99.1 1.2E-09 4.2E-14 86.8 11.5 161 228-403 8-172 (176)
98 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.2E-09 2.1E-13 86.3 16.0 185 190-376 4-219 (225)
99 4ga2_A E3 SUMO-protein ligase 99.1 2.2E-10 7.4E-15 88.5 6.6 143 233-390 4-149 (150)
100 3urz_A Uncharacterized protein 99.1 4.9E-09 1.7E-13 85.7 14.9 163 194-373 8-189 (208)
101 2r5s_A Uncharacterized protein 99.1 1.3E-08 4.5E-13 80.7 16.8 158 105-287 8-172 (176)
102 2fo7_A Synthetic consensus TPR 99.0 5E-09 1.7E-13 78.6 13.6 129 228-372 3-134 (136)
103 2pzi_A Probable serine/threoni 99.0 6.9E-10 2.4E-14 107.7 10.6 183 201-401 402-602 (681)
104 3qou_A Protein YBBN; thioredox 99.0 1.4E-08 4.8E-13 87.5 17.2 173 89-287 104-283 (287)
105 2vsy_A XCC0866; transferase, g 99.0 5.9E-09 2E-13 99.3 14.4 163 203-382 2-169 (568)
106 2pzi_A Probable serine/threoni 99.0 1.8E-08 6.3E-13 97.7 17.6 180 145-356 402-583 (681)
107 3urz_A Uncharacterized protein 99.0 1.4E-08 4.8E-13 83.0 14.3 189 137-349 7-198 (208)
108 2vsy_A XCC0866; transferase, g 98.9 7.8E-09 2.7E-13 98.4 13.2 154 239-407 2-160 (568)
109 2c2l_A CHIP, carboxy terminus 98.9 8.7E-09 3E-13 88.5 11.9 194 189-404 3-199 (281)
110 4f3v_A ESX-1 secretion system 98.9 3.3E-07 1.1E-11 77.1 20.2 190 37-258 18-240 (282)
111 2ifu_A Gamma-SNAP; membrane fu 98.9 3.8E-08 1.3E-12 85.7 14.9 199 38-286 4-222 (307)
112 3rjv_A Putative SEL1 repeat pr 98.9 7.7E-08 2.6E-12 78.8 15.5 178 85-290 3-199 (212)
113 3dra_A Protein farnesyltransfe 98.9 6E-07 2.1E-11 77.3 21.5 230 34-298 42-296 (306)
114 2ifu_A Gamma-SNAP; membrane fu 98.9 1.1E-08 3.8E-13 89.1 10.9 165 228-402 38-222 (307)
115 4ga2_A E3 SUMO-protein ligase 98.9 6.6E-09 2.2E-13 80.0 8.2 77 199-277 40-117 (150)
116 3gyz_A Chaperone protein IPGC; 98.8 1.2E-07 4E-12 72.8 14.0 124 168-295 12-138 (151)
117 2uy1_A Cleavage stimulation fa 98.8 1.2E-06 4.1E-11 81.3 23.0 337 5-401 11-380 (493)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.5E-07 5.2E-12 76.9 15.2 52 109-160 12-63 (213)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.8 6.1E-07 2.1E-11 73.3 18.2 131 135-294 7-154 (213)
120 3u3w_A Transcriptional activat 98.8 2.7E-07 9.1E-12 79.8 16.8 164 231-403 80-265 (293)
121 3gyz_A Chaperone protein IPGC; 98.8 2.7E-08 9.3E-13 76.4 8.8 94 313-406 41-135 (151)
122 3dra_A Protein farnesyltransfe 98.7 3.7E-06 1.3E-10 72.3 21.5 225 7-266 51-300 (306)
123 2qfc_A PLCR protein; TPR, HTH, 98.7 3.5E-07 1.2E-11 79.0 15.3 169 225-403 74-265 (293)
124 1p5q_A FKBP52, FK506-binding p 98.7 6.4E-08 2.2E-12 85.4 10.6 165 203-402 126-292 (336)
125 4gco_A Protein STI-1; structur 98.7 5.2E-08 1.8E-12 72.4 8.5 96 311-406 16-112 (126)
126 4gco_A Protein STI-1; structur 98.7 5.9E-07 2E-11 66.6 14.0 106 190-299 13-119 (126)
127 2qfc_A PLCR protein; TPR, HTH, 98.7 9.3E-07 3.2E-11 76.3 17.2 167 104-287 76-265 (293)
128 4f3v_A ESX-1 secretion system 98.7 3.8E-08 1.3E-12 82.8 8.0 187 202-407 18-240 (282)
129 1a17_A Serine/threonine protei 98.7 2.1E-07 7.3E-12 72.5 11.5 87 317-403 56-145 (166)
130 2uy1_A Cleavage stimulation fa 98.6 2.8E-06 9.6E-11 78.8 19.8 340 3-403 28-412 (493)
131 3q7a_A Farnesyltransferase alp 98.6 6.6E-06 2.3E-10 71.6 20.0 240 28-298 57-340 (349)
132 2c2l_A CHIP, carboxy terminus 98.6 2E-07 6.8E-12 80.0 10.2 93 68-161 4-99 (281)
133 3gw4_A Uncharacterized protein 98.6 8.3E-07 2.8E-11 71.7 13.5 91 314-404 72-176 (203)
134 3u3w_A Transcriptional activat 98.6 3.6E-06 1.2E-10 72.6 18.2 212 88-334 31-263 (293)
135 1a17_A Serine/threonine protei 98.6 5.2E-07 1.8E-11 70.3 11.8 128 24-161 12-144 (166)
136 2fbn_A 70 kDa peptidylprolyl i 98.6 4.7E-08 1.6E-12 79.1 5.9 166 233-405 11-187 (198)
137 1na0_A Designed protein CTPR3; 98.6 5.1E-07 1.7E-11 66.3 11.0 115 226-388 9-124 (125)
138 2vgx_A Chaperone SYCD; alterna 98.6 2E-07 6.7E-12 71.5 8.7 94 313-406 26-120 (148)
139 2lni_A Stress-induced-phosphop 98.6 7.4E-07 2.5E-11 66.4 11.8 118 21-148 12-132 (133)
140 1na0_A Designed protein CTPR3; 98.6 7.8E-07 2.7E-11 65.3 11.7 112 25-146 9-123 (125)
141 2kck_A TPR repeat; tetratricop 98.6 2.1E-07 7.3E-12 67.0 8.4 99 311-409 9-111 (112)
142 2lni_A Stress-induced-phosphop 98.6 3.6E-07 1.2E-11 68.2 9.7 72 318-389 60-132 (133)
143 2vyi_A SGTA protein; chaperone 98.6 7.5E-07 2.6E-11 66.0 11.0 118 23-150 10-130 (131)
144 2xcb_A PCRH, regulatory protei 98.5 2.9E-07 1E-11 69.9 8.7 93 314-406 24-117 (142)
145 3gw4_A Uncharacterized protein 98.5 8.2E-07 2.8E-11 71.7 11.8 157 115-287 4-175 (203)
146 1hxi_A PEX5, peroxisome target 98.5 2.1E-07 7.2E-12 68.5 7.4 93 314-406 23-116 (121)
147 2vyi_A SGTA protein; chaperone 98.5 4.8E-07 1.6E-11 67.1 9.5 119 225-391 11-130 (131)
148 2e2e_A Formate-dependent nitri 98.5 4.2E-07 1.4E-11 71.9 9.6 87 200-288 20-110 (177)
149 3upv_A Heat shock protein STI1 98.5 3.1E-07 1.1E-11 68.1 8.2 94 312-405 8-102 (126)
150 3upv_A Heat shock protein STI1 98.5 3.3E-06 1.1E-10 62.4 13.2 97 190-288 4-101 (126)
151 2vgx_A Chaperone SYCD; alterna 98.5 3E-06 1E-10 64.7 13.0 98 189-288 20-118 (148)
152 2e2e_A Formate-dependent nitri 98.5 8.7E-07 3E-11 70.0 10.3 122 79-259 21-148 (177)
153 4gcn_A Protein STI-1; structur 98.5 2.2E-06 7.6E-11 63.6 11.6 104 191-298 9-120 (127)
154 3q7a_A Farnesyltransferase alp 98.5 8.6E-05 3E-09 64.6 23.1 216 80-369 66-330 (349)
155 4gcn_A Protein STI-1; structur 98.5 5.7E-07 2E-11 66.8 8.0 95 311-405 11-113 (127)
156 2xcb_A PCRH, regulatory protei 98.4 3.3E-06 1.1E-10 64.0 12.3 104 190-297 18-122 (142)
157 3sz7_A HSC70 cochaperone (SGT) 98.4 7.3E-07 2.5E-11 69.5 8.7 96 312-407 15-111 (164)
158 2fbn_A 70 kDa peptidylprolyl i 98.4 4.5E-07 1.5E-11 73.3 7.6 169 109-288 10-186 (198)
159 1p5q_A FKBP52, FK506-binding p 98.4 2.2E-06 7.7E-11 75.4 12.7 160 117-287 127-293 (336)
160 4b4t_Q 26S proteasome regulato 98.4 2.7E-06 9.2E-11 77.7 13.3 194 197-403 11-244 (434)
161 4b4t_Q 26S proteasome regulato 98.4 8.4E-05 2.9E-09 67.7 23.3 199 73-287 9-244 (434)
162 3q49_B STIP1 homology and U bo 98.4 1.1E-06 3.8E-11 66.0 8.5 95 313-407 14-109 (137)
163 2xev_A YBGF; tetratricopeptide 98.4 9.7E-07 3.3E-11 65.5 8.0 92 314-405 8-106 (129)
164 2kck_A TPR repeat; tetratricop 98.4 4.7E-06 1.6E-10 59.7 11.5 98 189-288 5-106 (112)
165 2dba_A Smooth muscle cell asso 98.4 1.9E-06 6.5E-11 65.5 9.9 95 312-406 32-130 (148)
166 3sz7_A HSC70 cochaperone (SGT) 98.4 1E-05 3.4E-10 63.0 13.4 105 188-296 9-114 (164)
167 1elw_A TPR1-domain of HOP; HOP 98.4 6.9E-06 2.4E-10 59.4 11.7 99 23-131 2-100 (118)
168 1elw_A TPR1-domain of HOP; HOP 98.3 2.1E-05 7.2E-10 56.7 14.2 103 190-296 4-107 (118)
169 3q49_B STIP1 homology and U bo 98.3 1.2E-05 4.2E-10 60.1 12.9 100 187-288 6-106 (137)
170 1hxi_A PEX5, peroxisome target 98.3 5.2E-06 1.8E-10 60.9 10.4 95 192-288 19-114 (121)
171 3ro3_A PINS homolog, G-protein 98.3 2.7E-06 9.3E-11 65.6 9.1 91 314-404 55-158 (164)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 2.8E-06 9.7E-11 78.2 10.2 158 203-395 247-405 (457)
173 3k9i_A BH0479 protein; putativ 98.3 6.2E-07 2.1E-11 65.5 4.4 86 320-405 2-91 (117)
174 1elr_A TPR2A-domain of HOP; HO 98.3 1.5E-05 5.3E-10 58.7 12.2 105 190-298 4-116 (131)
175 2dba_A Smooth muscle cell asso 98.3 7.1E-06 2.4E-10 62.2 10.5 63 225-287 27-93 (148)
176 1elr_A TPR2A-domain of HOP; HO 98.3 1.7E-06 5.7E-11 64.1 6.8 96 311-406 7-110 (131)
177 3ro3_A PINS homolog, G-protein 98.3 5.2E-06 1.8E-10 63.9 9.6 137 226-372 9-160 (164)
178 1wao_1 Serine/threonine protei 98.2 7.5E-06 2.6E-10 75.7 11.7 124 194-332 10-134 (477)
179 3dss_A Geranylgeranyl transfer 98.2 0.00022 7.6E-09 61.7 19.6 247 25-297 26-311 (331)
180 2xev_A YBGF; tetratricopeptide 98.2 4.6E-05 1.6E-09 56.2 13.5 100 194-297 6-112 (129)
181 3dss_A Geranylgeranyl transfer 98.2 0.00036 1.2E-08 60.4 20.3 83 79-162 40-138 (331)
182 1wao_1 Serine/threonine protei 98.2 3.3E-06 1.1E-10 78.1 8.2 123 263-400 10-135 (477)
183 3rkv_A Putative peptidylprolyl 98.2 4.8E-06 1.6E-10 64.7 7.4 95 312-406 15-128 (162)
184 2hr2_A Hypothetical protein; a 98.1 4.9E-06 1.7E-10 63.3 6.9 93 314-406 17-133 (159)
185 1dce_A Protein (RAB geranylger 98.1 0.00025 8.5E-09 66.9 19.7 173 204-393 43-244 (567)
186 1ihg_A Cyclophilin 40; ppiase 98.1 1.9E-05 6.4E-10 70.4 10.6 87 311-397 276-363 (370)
187 2if4_A ATFKBP42; FKBP-like, al 98.1 4.6E-06 1.6E-10 73.5 6.0 155 225-410 178-334 (338)
188 3k9i_A BH0479 protein; putativ 98.0 1.8E-05 6E-10 57.6 8.0 93 202-296 2-96 (117)
189 3rkv_A Putative peptidylprolyl 98.0 8.8E-05 3E-09 57.3 12.2 108 190-299 11-136 (162)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3.3E-05 1.1E-09 71.1 11.2 127 25-161 268-413 (457)
191 3n71_A Histone lysine methyltr 98.0 1.8E-05 6.3E-10 72.8 9.1 131 267-407 317-467 (490)
192 2l6j_A TPR repeat-containing p 98.0 1.3E-05 4.5E-10 57.3 6.5 97 23-130 2-105 (111)
193 3n71_A Histone lysine methyltr 98.0 3.9E-05 1.3E-09 70.7 10.9 130 234-373 317-467 (490)
194 2if4_A ATFKBP42; FKBP-like, al 98.0 2.3E-05 7.8E-10 69.0 9.1 151 190-373 179-331 (338)
195 1ihg_A Cyclophilin 40; ppiase 97.9 0.0001 3.6E-09 65.6 12.3 123 192-329 225-362 (370)
196 3ma5_A Tetratricopeptide repea 97.9 4.9E-05 1.7E-09 53.4 8.2 65 340-404 6-70 (100)
197 2kat_A Uncharacterized protein 97.9 1.9E-05 6.5E-10 57.1 6.2 80 326-405 3-83 (115)
198 2l6j_A TPR repeat-containing p 97.9 2.8E-06 9.5E-11 61.0 0.9 90 312-401 8-104 (111)
199 1dce_A Protein (RAB geranylger 97.9 0.00057 1.9E-08 64.5 16.5 117 38-164 42-174 (567)
200 2hr2_A Hypothetical protein; a 97.8 0.00021 7.2E-09 54.3 11.0 95 192-288 13-131 (159)
201 1na3_A Designed protein CTPR2; 97.8 5.7E-05 1.9E-09 51.7 6.3 76 314-389 15-91 (91)
202 3lvg_A Clathrin heavy chain 1; 97.7 3.6E-06 1.2E-10 74.7 -0.4 312 23-359 52-428 (624)
203 2kat_A Uncharacterized protein 97.7 0.00026 8.9E-09 51.0 9.8 79 208-288 3-82 (115)
204 1zu2_A Mitochondrial import re 97.7 0.00011 3.9E-09 55.6 7.3 100 200-303 12-133 (158)
205 1zu2_A Mitochondrial import re 97.6 2.6E-05 8.8E-10 59.2 3.2 89 318-406 12-122 (158)
206 3ma5_A Tetratricopeptide repea 97.6 0.0004 1.4E-08 48.6 9.0 66 222-287 3-69 (100)
207 1na3_A Designed protein CTPR2; 97.6 0.0005 1.7E-08 46.8 9.3 82 24-115 8-89 (91)
208 3bee_A Putative YFRE protein; 97.6 0.00033 1.1E-08 48.2 8.1 69 339-407 4-75 (93)
209 1klx_A Cysteine rich protein B 97.5 0.0012 4E-08 49.4 10.7 114 272-407 8-129 (138)
210 1klx_A Cysteine rich protein B 97.5 0.00076 2.6E-08 50.5 9.2 113 147-290 8-128 (138)
211 2kc7_A BFR218_protein; tetratr 97.4 0.00019 6.4E-09 50.1 4.5 84 314-405 6-91 (99)
212 3ly7_A Transcriptional activat 97.2 0.02 6.8E-07 49.9 16.4 77 221-299 272-348 (372)
213 2kc7_A BFR218_protein; tetratr 97.1 0.0011 3.8E-08 46.0 6.6 61 347-407 6-67 (99)
214 3mkq_A Coatomer beta'-subunit; 97.1 0.025 8.7E-07 55.9 18.7 127 113-288 609-736 (814)
215 1wy6_A Hypothetical protein ST 97.1 0.039 1.3E-06 39.9 14.1 141 236-407 17-157 (172)
216 3qww_A SET and MYND domain-con 97.1 0.00031 1.1E-08 63.6 4.3 85 320-404 310-411 (433)
217 3qwp_A SET and MYND domain-con 97.1 0.00067 2.3E-08 61.5 6.3 89 315-403 294-399 (429)
218 3u64_A Protein TP_0956; tetrat 97.1 0.004 1.4E-07 52.0 9.8 90 323-412 178-277 (301)
219 1qsa_A Protein (soluble lytic 97.0 0.16 5.6E-06 48.0 21.6 142 26-182 8-153 (618)
220 3mkq_A Coatomer beta'-subunit; 97.0 0.012 4.2E-07 58.1 14.9 102 33-162 607-709 (814)
221 3lvg_A Clathrin heavy chain 1; 96.9 6.1E-06 2.1E-10 73.3 -8.4 257 103-395 54-324 (624)
222 3qww_A SET and MYND domain-con 96.9 0.0025 8.4E-08 57.7 8.1 86 202-287 310-410 (433)
223 3qwp_A SET and MYND domain-con 96.8 0.0052 1.8E-07 55.7 9.4 93 195-287 292-399 (429)
224 3ly7_A Transcriptional activat 96.8 0.0091 3.1E-07 52.0 10.4 138 223-374 191-343 (372)
225 3bee_A Putative YFRE protein; 96.7 0.023 8E-07 38.8 10.1 66 223-288 3-72 (93)
226 1pc2_A Mitochondria fission pr 96.4 0.0044 1.5E-07 46.4 5.3 83 324-406 14-102 (152)
227 3mkq_B Coatomer subunit alpha; 96.2 0.28 9.5E-06 37.7 15.6 129 111-285 13-141 (177)
228 3u64_A Protein TP_0956; tetrat 96.2 0.089 3.1E-06 44.0 12.3 93 205-299 178-282 (301)
229 1pc2_A Mitochondria fission pr 96.0 0.072 2.5E-06 39.8 9.8 94 205-302 13-112 (152)
230 2v5f_A Prolyl 4-hydroxylase su 95.9 0.03 1E-06 39.2 7.1 69 313-381 10-86 (104)
231 4b4t_P 26S proteasome regulato 95.8 0.67 2.3E-05 42.0 17.3 194 82-287 30-246 (445)
232 2v5f_A Prolyl 4-hydroxylase su 95.5 0.078 2.7E-06 36.9 8.0 70 225-296 4-81 (104)
233 4gns_B Protein CSD3, chitin bi 95.3 0.6 2.1E-05 45.1 15.9 55 348-402 344-398 (754)
234 3mkq_B Coatomer subunit alpha; 95.2 0.77 2.6E-05 35.3 14.2 126 201-367 16-141 (177)
235 1qsa_A Protein (soluble lytic 95.0 2.4 8.3E-05 40.1 26.3 54 233-286 292-346 (618)
236 1nzn_A CGI-135 protein, fissio 94.1 0.42 1.4E-05 34.4 8.6 63 316-378 43-111 (126)
237 4ady_A RPN2, 26S proteasome re 94.0 3.5 0.00012 40.9 17.6 276 72-369 343-657 (963)
238 1nzn_A CGI-135 protein, fissio 94.0 0.06 2E-06 38.7 4.1 84 322-405 15-104 (126)
239 1wy6_A Hypothetical protein ST 93.9 1.3 4.5E-05 32.1 13.8 66 225-290 90-156 (172)
240 4b4t_P 26S proteasome regulato 93.8 0.37 1.3E-05 43.7 10.1 188 203-403 29-246 (445)
241 2ff4_A Probable regulatory pro 93.7 0.15 5.3E-06 45.3 7.3 60 344-403 174-233 (388)
242 3ffl_A Anaphase-promoting comp 93.3 2 6.9E-05 32.4 11.4 58 229-286 23-90 (167)
243 2ff4_A Probable regulatory pro 93.2 0.46 1.6E-05 42.2 9.5 71 228-298 173-249 (388)
244 4fhn_B Nucleoporin NUP120; pro 93.1 3 0.0001 43.0 16.3 192 196-403 818-1049(1139)
245 4h7y_A Dual specificity protei 93.0 0.43 1.5E-05 35.4 7.3 119 258-385 12-138 (161)
246 3lpz_A GET4 (YOR164C homolog); 93.0 4 0.00014 35.0 18.7 48 205-252 11-61 (336)
247 3txn_A 26S proteasome regulato 92.8 1.1 3.8E-05 39.6 11.1 165 227-401 20-207 (394)
248 3ffl_A Anaphase-promoting comp 92.2 1.1 3.8E-05 33.8 8.8 133 20-161 13-149 (167)
249 4h7y_A Dual specificity protei 92.0 0.82 2.8E-05 33.9 7.6 98 23-130 11-121 (161)
250 4fhn_B Nucleoporin NUP120; pro 90.9 7.1 0.00024 40.2 16.1 159 108-275 817-987 (1139)
251 3esl_A Checkpoint serine/threo 90.6 1.9 6.5E-05 33.7 9.0 84 324-408 60-148 (202)
252 1y8m_A FIS1; mitochondria, unk 90.5 1.9 6.5E-05 31.6 8.3 68 338-405 36-107 (144)
253 1v54_E Cytochrome C oxidase po 89.9 3.3 0.00011 28.2 10.1 65 202-267 21-87 (109)
254 3o48_A Mitochondria fission 1 89.6 1.2 4.3E-05 32.1 6.6 68 338-405 37-108 (134)
255 3txn_A 26S proteasome regulato 88.9 12 0.0004 33.1 15.3 173 190-371 19-211 (394)
256 2wpv_A GET4, UPF0363 protein Y 88.6 10 0.00036 32.1 18.6 180 206-404 13-217 (312)
257 4a1g_A Mitotic checkpoint seri 88.0 3.6 0.00012 30.6 8.4 81 325-408 52-134 (152)
258 2wpv_A GET4, UPF0363 protein Y 87.9 12 0.0004 31.9 18.3 182 8-217 16-215 (312)
259 2y69_E Cytochrome C oxidase su 87.8 6.2 0.00021 28.5 10.0 62 205-267 68-130 (152)
260 3lpz_A GET4 (YOR164C homolog); 87.4 13 0.00045 31.8 22.3 184 7-218 14-215 (336)
261 3ltm_A Alpha-REP4; protein eng 86.7 10 0.00034 29.8 19.6 154 101-287 31-184 (211)
262 4b4t_R RPN7, 26S proteasome re 86.6 4.5 0.00015 36.4 10.1 60 228-287 133-196 (429)
263 2uwj_G Type III export protein 86.4 5.8 0.0002 26.8 8.9 79 82-164 20-98 (115)
264 1zbp_A Hypothetical protein VP 86.2 3.8 0.00013 33.8 8.3 59 198-258 5-63 (273)
265 2p58_C Putative type III secre 86.0 6.2 0.00021 26.8 10.3 79 82-164 21-99 (116)
266 1zbp_A Hypothetical protein VP 85.9 14 0.00046 30.5 13.1 121 234-373 5-132 (273)
267 3ltm_A Alpha-REP4; protein eng 85.0 12 0.00042 29.3 18.9 184 117-337 16-204 (211)
268 4gns_B Protein CSD3, chitin bi 84.9 8.4 0.00029 37.3 11.4 55 75-130 344-398 (754)
269 2wvi_A Mitotic checkpoint seri 84.8 6.3 0.00021 29.8 8.4 51 358-408 77-129 (164)
270 3ltj_A Alpharep-4; protein eng 84.2 13 0.00044 28.9 17.1 170 67-272 27-196 (201)
271 1v54_E Cytochrome C oxidase po 83.4 8.6 0.00029 26.2 9.0 50 56-111 38-87 (109)
272 2uwj_G Type III export protein 83.0 8.8 0.0003 26.0 8.3 80 274-373 21-100 (115)
273 2p58_C Putative type III secre 82.6 9.1 0.00031 26.0 8.4 80 274-373 22-101 (116)
274 3ltj_A Alpharep-4; protein eng 81.7 16 0.00056 28.3 20.0 169 101-305 26-194 (201)
275 3o48_A Mitochondria fission 1 78.2 17 0.00057 26.3 9.1 86 4-97 19-107 (134)
276 2y69_E Cytochrome C oxidase su 78.1 17 0.00058 26.3 8.8 43 88-130 73-115 (152)
277 4aez_C MAD3, mitotic spindle c 78.1 7.8 0.00027 30.9 7.1 81 325-408 101-183 (223)
278 4b4t_R RPN7, 26S proteasome re 77.0 37 0.0013 30.4 12.3 108 192-299 133-248 (429)
279 1y8m_A FIS1; mitochondria, unk 75.6 21 0.00072 26.1 10.7 86 4-97 18-106 (144)
280 2qx5_A Nucleoporin NIC96; mRNA 73.7 35 0.0012 32.5 11.5 94 235-337 452-567 (661)
281 3esl_A Checkpoint serine/threo 73.1 31 0.0011 26.9 11.4 53 203-255 92-144 (202)
282 2wvi_A Mitotic checkpoint seri 67.0 27 0.00093 26.3 7.5 48 208-255 78-125 (164)
283 2nsz_A Programmed cell death p 66.6 31 0.0011 24.7 7.6 29 136-164 9-37 (129)
284 1oyz_A Hypothetical protein YI 65.8 54 0.0019 26.8 17.8 199 67-303 67-276 (280)
285 3bqo_A Telomeric repeat-bindin 65.5 25 0.00087 27.2 7.0 61 324-384 94-160 (211)
286 4ady_A RPN2, 26S proteasome re 65.3 1.2E+02 0.004 30.4 28.8 85 169-254 343-439 (963)
287 2d2s_A Exocyst complex compone 64.1 33 0.0011 27.7 8.1 95 30-129 23-117 (235)
288 1ug3_A EIF4GI, eukaryotic prot 63.3 30 0.001 29.8 8.3 142 107-251 15-166 (339)
289 4a1g_A Mitotic checkpoint seri 61.8 46 0.0016 24.6 11.4 49 207-255 82-130 (152)
290 4aez_C MAD3, mitotic spindle c 61.2 26 0.0009 27.9 6.7 49 207-255 131-179 (223)
291 2ion_A PDCD4, programmed cell 60.5 28 0.00095 25.9 6.5 29 136-164 11-39 (152)
292 1wdy_A 2-5A-dependent ribonucl 59.7 63 0.0022 26.1 9.7 254 72-366 6-275 (285)
293 4gq2_M Nucleoporin NUP120; bet 56.6 52 0.0018 33.1 9.7 47 343-389 899-950 (950)
294 3bu8_A Telomeric repeat-bindin 55.7 74 0.0025 25.1 8.6 94 242-337 88-190 (235)
295 4b4t_S RPN3, 26S proteasome re 54.0 1E+02 0.0034 28.3 10.1 124 25-160 231-367 (523)
296 3qil_A Clathrin heavy chain 1; 54.0 9.3 0.00032 26.9 2.7 68 177-248 18-86 (125)
297 2nsz_A Programmed cell death p 53.8 19 0.00064 25.9 4.5 26 27-52 9-34 (129)
298 4ets_A Ferric uptake regulatio 53.4 68 0.0023 24.0 8.2 72 41-120 13-86 (162)
299 1k1a_A B-cell lymphoma 3-encod 51.1 65 0.0022 25.4 8.1 196 73-293 11-210 (241)
300 2ion_A PDCD4, programmed cell 48.3 14 0.00048 27.5 3.1 26 27-52 11-36 (152)
301 4b4t_S RPN3, 26S proteasome re 48.0 1.7E+02 0.0057 26.9 11.9 61 225-287 230-298 (523)
302 3eiq_C Programmed cell death p 46.8 1.4E+02 0.0049 25.8 13.2 59 192-253 56-116 (358)
303 3kae_A CDC27, possible protein 46.1 77 0.0026 24.1 6.6 27 134-160 114-140 (242)
304 1wgl_A TOLL-interacting protei 43.3 12 0.0004 22.6 1.6 26 386-411 34-59 (59)
305 1ug3_A EIF4GI, eukaryotic prot 43.0 1.6E+02 0.0054 25.2 11.4 25 230-254 15-39 (339)
306 2b7e_A PRE-mRNA processing pro 42.8 25 0.00086 21.1 3.0 34 41-82 2-36 (59)
307 1bpo_A Protein (clathrin); cla 41.3 2E+02 0.0069 25.9 11.4 134 16-163 352-485 (494)
308 3i5p_A Nucleoporin NUP170; hel 40.5 1.4E+02 0.0048 27.4 9.0 63 339-404 176-246 (525)
309 2ijq_A Hypothetical protein; s 38.3 99 0.0034 23.1 6.3 54 318-371 42-105 (161)
310 2fe3_A Peroxide operon regulat 37.9 1.1E+02 0.0039 22.1 7.9 59 56-120 15-73 (145)
311 3pvs_A Replication-associated 37.0 2.3E+02 0.0079 25.4 10.1 48 4-53 166-220 (447)
312 2p1h_A APAF-1, apoptotic prote 36.1 92 0.0031 20.5 6.0 39 320-360 48-86 (94)
313 3bu8_A Telomeric repeat-bindin 35.3 1.7E+02 0.0056 23.2 7.8 72 275-355 88-161 (235)
314 1mzb_A Ferric uptake regulatio 34.8 1.2E+02 0.0042 21.6 7.2 59 56-120 11-70 (136)
315 3us6_A Histidine-containing ph 34.7 1.3E+02 0.0046 22.1 6.7 105 262-369 10-121 (153)
316 1wty_A Hypothetical protein TT 34.7 1.2E+02 0.0039 21.2 6.9 76 324-402 4-79 (119)
317 3eyy_A Putative iron uptake re 34.7 1.3E+02 0.0045 21.8 6.7 57 56-119 12-68 (145)
318 3kea_A K1L; tropism, ANK repea 34.7 1.7E+02 0.0059 23.9 8.3 194 67-296 28-225 (285)
319 2d2s_A Exocyst complex compone 33.9 1.8E+02 0.0063 23.3 9.3 84 232-332 24-115 (235)
320 2zu6_B Programmed cell death p 33.8 1.3E+02 0.0045 25.3 7.3 27 137-163 169-195 (307)
321 4ets_A Ferric uptake regulatio 33.6 93 0.0032 23.2 5.7 71 6-85 14-86 (162)
322 2zu6_B Programmed cell death p 33.5 2.2E+02 0.0074 24.0 12.2 59 192-253 5-65 (307)
323 2w57_A Ferric uptake regulatio 33.5 1.4E+02 0.0048 21.8 7.2 59 56-120 10-69 (150)
324 4gq2_M Nucleoporin NUP120; bet 32.8 3.9E+02 0.013 26.8 11.8 87 196-288 816-926 (950)
325 2xig_A Ferric uptake regulatio 32.4 1.5E+02 0.005 21.7 8.2 59 56-120 20-78 (150)
326 2p1h_A APAF-1, apoptotic prote 31.6 1.1E+02 0.0038 20.1 6.4 65 87-155 24-88 (94)
327 2etb_A Transient receptor pote 31.4 1.9E+02 0.0067 22.8 9.2 203 197-406 6-249 (256)
328 3ygs_P Procaspase 9; apoptosis 31.2 1E+02 0.0035 20.6 5.1 38 240-279 51-88 (97)
329 2f6m_A Suppressor protein STP2 30.8 83 0.0028 19.3 4.0 52 343-394 4-55 (65)
330 3jxi_A Vanilloid receptor-rela 30.7 1E+02 0.0034 24.7 6.1 121 32-158 9-161 (260)
331 3ygs_P Procaspase 9; apoptosis 28.9 77 0.0026 21.2 4.1 64 89-154 25-88 (97)
332 2o03_A Probable zinc uptake re 28.8 1.4E+02 0.0047 21.2 5.8 49 72-120 14-62 (131)
333 3bge_A Predicted ATPase; struc 28.4 1.7E+02 0.0057 22.8 6.2 35 272-306 20-54 (201)
334 2r9g_A AAA ATPase, central reg 28.1 84 0.0029 24.5 4.6 31 272-303 27-57 (204)
335 3m0z_A Putative aldolase; MCSG 28.0 81 0.0028 25.1 4.5 81 323-403 146-246 (249)
336 3kea_A K1L; tropism, ANK repea 27.8 2.5E+02 0.0085 22.9 8.6 83 74-161 65-153 (285)
337 1oyz_A Hypothetical protein YI 27.4 2.4E+02 0.0084 22.7 20.9 48 101-148 35-82 (280)
338 3ctd_A Putative ATPase, AAA fa 27.4 1.1E+02 0.0037 24.1 5.1 35 272-306 48-82 (213)
339 1te4_A Conserved protein MTH18 26.8 1.6E+02 0.0056 20.5 7.2 64 101-164 54-117 (131)
340 1s3q_A Ferritin; ferroxidase, 26.8 2E+02 0.007 21.6 8.0 112 274-405 52-163 (173)
341 1u60_A Probable glutaminase YB 26.5 2.4E+02 0.0083 23.7 7.4 27 154-180 83-110 (310)
342 2fu4_A Ferric uptake regulatio 26.5 1.3E+02 0.0043 19.0 7.0 58 56-119 10-68 (83)
343 3mwm_A ZUR, putative metal upt 25.9 1.3E+02 0.0046 21.6 5.3 51 70-120 15-65 (139)
344 2yru_A Steroid receptor RNA ac 25.8 1.3E+02 0.0043 21.2 4.8 43 10-52 46-88 (118)
345 4fke_A Aminopeptidase N; zinc 25.6 5.1E+02 0.018 25.8 17.3 164 193-372 689-862 (909)
346 3eu9_A Huntingtin-interacting 24.8 2.4E+02 0.0082 21.7 9.7 80 75-159 46-131 (240)
347 2pby_A Glutaminase; secsg, rik 24.8 3.1E+02 0.011 23.0 8.9 26 154-179 82-108 (308)
348 2xig_A Ferric uptake regulatio 24.8 1.7E+02 0.0059 21.3 5.8 49 343-391 28-77 (150)
349 2ijq_A Hypothetical protein; s 24.6 2.2E+02 0.0076 21.2 7.4 59 269-336 42-103 (161)
350 2es9_A Putative cytoplasmic pr 24.6 66 0.0022 21.1 2.9 56 41-101 13-68 (115)
351 2fe3_A Peroxide operon regulat 23.9 1.7E+02 0.0059 21.1 5.7 41 262-302 24-64 (145)
352 3qz3_A Ferritin; structural ge 23.9 2.4E+02 0.0083 21.5 7.4 108 274-402 59-167 (184)
353 2crb_A Nuclear receptor bindin 23.7 1E+02 0.0035 20.5 3.6 24 343-366 17-40 (97)
354 2ko4_A Mediator of RNA polymer 23.6 83 0.0028 20.1 3.1 39 247-285 24-62 (81)
355 3mwm_A ZUR, putative metal upt 23.0 1.1E+02 0.0039 21.9 4.5 49 29-85 17-65 (139)
356 1g1e_B SIN3A; four-helix bundl 22.3 1.6E+02 0.0053 19.4 4.5 30 357-386 10-39 (89)
357 2npu_A FKBP12-rapamycin comple 22.1 2E+02 0.0069 20.4 5.3 15 353-367 52-66 (126)
358 1q02_A Sequestosome 1; helical 21.9 1.3E+02 0.0043 17.5 5.3 40 87-128 10-49 (52)
359 3eyy_A Putative iron uptake re 21.6 1.6E+02 0.0056 21.3 5.1 60 15-84 9-68 (145)
360 2qx5_A Nucleoporin NIC96; mRNA 21.4 5.4E+02 0.018 24.5 16.1 41 105-146 155-198 (661)
361 3m6y_A 4-hydroxy-2-oxoglutarat 21.3 83 0.0028 25.4 3.4 81 323-403 169-269 (275)
362 2o03_A Probable zinc uptake re 20.9 1.3E+02 0.0045 21.3 4.4 47 30-84 15-61 (131)
363 3bqo_A Telomeric repeat-bindin 20.8 1.3E+02 0.0045 23.4 4.3 24 232-255 123-146 (211)
364 3kae_A CDC27, possible protein 20.6 2.9E+02 0.0098 21.1 10.0 122 201-332 13-138 (242)
365 1a1w_A FADD protein; apoptosis 20.3 1.9E+02 0.0065 19.1 4.7 58 343-400 22-82 (91)
366 2bn5_A PSI; nuclear protein, s 20.3 1E+02 0.0035 15.8 2.8 23 380-402 7-29 (33)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-35 Score=285.69 Aligned_cols=260 Identities=11% Similarity=-0.063 Sum_probs=198.9
Q ss_pred HHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHH
Q 039757 144 LVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLI 212 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~ 212 (415)
|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|. .+.+..++..++.++.+.|++++|..+
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344555555555555543 45566666666666666666665 233445566666666666666666666
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 291 (415)
++.+.+. .|.+..+++.++.+|.+.|++++|.++|+++.+..| +..+|+.++.+|.+.|++++|.++|++|.+.+ .
T Consensus 362 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 438 (597)
T 2xpi_A 362 SNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-Q 438 (597)
T ss_dssp HHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 6666654 455778888888888888888888888888877644 56788888888888888888888888887753 3
Q ss_pred CChhhHHHHHHHHccCCc--------------------chHHHHHHhHhcCCHHHHHHHHhcCCCC------CcC--HHH
Q 039757 292 PNRVTFLSVLNACSHGGL--------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE------ITD--VVV 343 (415)
Q Consensus 292 p~~~~~~~ll~~~~~~~~--------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~--~~~ 343 (415)
.+..++..+..+|.+.|+ .|..++..|.+.|++++|.++|+++... .|+ ..+
T Consensus 439 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 366777777777777766 6788999999999999999999887543 365 679
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
|..++.+|.+.|++++|.+.++++.+.+|.+..+|..++.+|.+.|++++|.++++++.+.+.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999988899999999999999999999999999887654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-33 Score=267.50 Aligned_cols=352 Identities=9% Similarity=-0.012 Sum_probs=288.5
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
|++..|+.++..|.+.|++++|+.+|++|. .. . | +..++..++.+|.+.|++++|..+|+.+... +++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~--~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 149 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVL---DI--T--G---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRS 149 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HH--H--C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTC
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHH---hh--C--C---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccc
Confidence 688899999999999999999999999998 32 2 5 7789999999999999999999999988653 678
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC-C------------------chhhHHHHHHHHHhhCCHHHHHHHHhhCCC-
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE-R------------------NLVTWNVMITGLVKWGELEYARSLFEEMPC- 162 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 162 (415)
..+++.++.+|.+.|++++|.++|+++.. . +..+|+.++.+|.+.|++++|.++|++|.+
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999996543 2 478999999999999999999999999974
Q ss_pred -CC-hhHHHHH--------------------------------------HHHHHhccCCCCcc--------CCCchHHHH
Q 039757 163 -RN-VVSWTGI--------------------------------------LDGYTRMNRSNGAS--------TEPSEITIL 194 (415)
Q Consensus 163 -~~-~~~~~~l--------------------------------------i~~~~~~~~~~~a~--------~~~~~~~~~ 194 (415)
|+ ...+..+ +..|.+.|++++|. .+++..++.
T Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 309 (597)
T 2xpi_A 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309 (597)
T ss_dssp CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHH
T ss_pred CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHH
Confidence 32 2333333 33344455555554 236677777
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccC
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHG 273 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 273 (415)
.++..+.+.|++++|..+|+++.+.+ |.+..+++.++.+|.+.|++++|.++|+++....| +..+|+.++..|.+.|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 78888888888888888888877663 55677777888888888888888888887776543 5667777888888888
Q ss_pred chHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHH
Q 039757 274 MGKAAVENFERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGAC 351 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 351 (415)
++++|..+|+++.+. .|+ ..+ |+.++..|.+.|++++|.++|+++....| +..+|..++.+|
T Consensus 388 ~~~~A~~~~~~~~~~--~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 388 KISEARRYFSKSSTM--DPQFGPA--------------WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451 (597)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHH--------------HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCCCHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 888888888887764 333 334 44478889999999999999998876534 778999999999
Q ss_pred hhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.+.|++++|.++|+++.+..+.++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999876
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.6e-30 Score=238.91 Aligned_cols=213 Identities=10% Similarity=0.018 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCC-chhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh
Q 039757 42 KKAFLLYKQLQQIYTHSHSPLRPLFD-SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120 (415)
Q Consensus 42 ~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 120 (415)
..+..+.+.+. ..+.. + . ...++.+|.+|++.|++++|.++|++|.+.|++||..+||+||.+|++.+...
T Consensus 7 s~~e~L~~~~~---~k~~~--~---spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~ 78 (501)
T 4g26_A 7 SPSENLSRKAK---KKAIQ--Q---SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAAT 78 (501)
T ss_dssp -------------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCS
T ss_pred chHHHHHHHHH---Hhccc--C---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchh
Confidence 34455556666 55555 3 3 34588889999999999999999999999999999999999999998877643
Q ss_pred HHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHH
Q 039757 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI 200 (415)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~ 200 (415)
++ .+.+.+++|.++|++|...+ ..||..||+.++.+|
T Consensus 79 ~~----------------------~~~~~l~~A~~lf~~M~~~G---------------------~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 79 ES----------------------SPNPGLSRGFDIFKQMIVDK---------------------VVPNEATFTNGARLA 115 (501)
T ss_dssp SS----------------------SCCHHHHHHHHHHHHHHHTT---------------------CCCCHHHHHHHHHHH
T ss_pred hh----------------------hhcchHHHHHHHHHHHHHhC---------------------CCCCHHHHHHHHHHH
Confidence 32 12344566777777776555 566777777777777
Q ss_pred hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChhhHHHHHHHHHccCchHHH
Q 039757 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKAA 278 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A 278 (415)
++.|++++|.++|++|.+.|+.| +..+|+++|.+|++.|++++|.++|++|.+. .||..||++||.+|++.|+.++|
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 77777777777777777777766 8889999999999999999999999988877 48888999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
.++|++|++.|+.|+..||+.++..|..
T Consensus 195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 195 YKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999998999999998887776543
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.8e-27 Score=216.46 Aligned_cols=351 Identities=12% Similarity=0.021 Sum_probs=255.6
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++.+.|.+.+..+.+..+ .+...+..+...+...|++++|...++... ...+. +..+|..+...+.+.|
T Consensus 13 g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~---~~~p~------~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAI---KQNPL------LAEAYSNLGNVYKERG 81 (388)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCC------chHHHHHHHHHHHHCC
Confidence 567788888887776542 334556677777888888888888888887 55444 7778888888888888
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
++++|.+.|+.+.+.. +.+...|..+..++.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+.|++
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888988888887764 34556788888888888888888888888764 43 45677788888888889888888888
Q ss_pred CCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc
Q 039757 160 MPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239 (415)
Q Consensus 160 m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (415)
+.+.+ +.+..++..+...+...|++++|...|+++.+. .|.+...+..+...+...
T Consensus 161 al~~~----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 161 AIETQ----------------------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHC----------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT
T ss_pred HHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHc
Confidence 76321 223455666666677777777777777777776 455677777777777777
Q ss_pred CCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHh
Q 039757 240 GCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDML 318 (415)
Q Consensus 240 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~ 318 (415)
|++++|...|++.....| +..++..+..+|...|++++|...|+++.+. .|+.... +..+...|
T Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-------------~~~l~~~~ 281 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDA-------------YCNLANAL 281 (388)
T ss_dssp TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHH-------------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHH-------------HHHHHHHH
Confidence 777777777777766644 4566777777777777777777777777764 3443221 22355667
Q ss_pred HhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHH
Q 039757 319 GRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
.+.|++++|.+.|+++... .++..++..+...+...|++++|.+.++++.+..|.+..++..++.+|.+.|++++|.+.
T Consensus 282 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777766544 235667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhh
Q 039757 398 RRVMDER 404 (415)
Q Consensus 398 ~~~m~~~ 404 (415)
++++.+.
T Consensus 362 ~~~a~~~ 368 (388)
T 1w3b_A 362 YKEAIRI 368 (388)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 7777654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.5e-28 Score=220.50 Aligned_cols=326 Identities=15% Similarity=0.033 Sum_probs=281.5
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHH
Q 039757 31 LLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV 110 (415)
Q Consensus 31 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 110 (415)
+...+.+.|++++|++.++.+. ...+. +...+..+...+...|+++.|...++...+.. +.+..+|..+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~---~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg 74 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLW---RQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLG 74 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 3456778999999999999998 55555 67788888889999999999999999998765 56788999999
Q ss_pred HHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCC
Q 039757 111 NMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187 (415)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~ 187 (415)
..|.+.|++++|+..|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+.+ +
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------p 132 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----------------------P 132 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----------------------T
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------C
Confidence 999999999999999999874 4 45679999999999999999999999886422 2
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 266 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 266 (415)
.+...+..+...+...|++++|...|+++.+. .|.+..++..+..++...|++++|...|+++....| +...|..+.
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 210 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 23445666777788899999999999999987 577899999999999999999999999999988866 467899999
Q ss_pred HHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHH
Q 039757 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRR 345 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 345 (415)
..+...|++++|...|++.... .|+.... +..+...|.+.|++++|.+.|+++....| +..+|.
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~-------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 275 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSL--SPNHAVV-------------HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999999999998875 5654321 23377779999999999999998876645 567899
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+...+.+.|++++|.+.++++.+..|.+..++..++.++.+.|++++|...++++.+..
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.6e-29 Score=234.53 Aligned_cols=204 Identities=10% Similarity=0.069 Sum_probs=174.7
Q ss_pred hhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC--
Q 039757 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY-- 83 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~-- 83 (415)
+.++.+...+.+.+........++.+|++|++.|++++|+++|++|. ..|+. | |..+|++||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~---~~Gv~--p---d~~tyn~Li~~c~~~~~~~ 78 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR---RNGVQ--L---SQYHYNVLLYVCSLAEAAT 78 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH---HHTCC--C---CHHHHHHHHHHHTTCCCCS
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HcCCC--C---CHhHHHHHHHHHHhCCchh
Confidence 34566666666666333334568999999999999999999999999 99999 9 99999999999998775
Q ss_pred -------CchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHH
Q 039757 84 -------PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEY 152 (415)
Q Consensus 84 -------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~ 152 (415)
++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++
T Consensus 79 ~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 79 ESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp SSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHH
Confidence 467899999999999999999999999999999999999999999974 899999999999999999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHH
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 232 (415)
|.++|++|.+.+ ..||..||+.++.+|++.|++++|.+++++|.+.|..| +..||+.+
T Consensus 159 A~~l~~~M~~~G---------------------~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l 216 (501)
T 4g26_A 159 AYEVDAHMVESE---------------------VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMI 216 (501)
T ss_dssp HHHHHHHHHHTT---------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHH
T ss_pred HHHHHHHHHhcC---------------------CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHH
Confidence 999999998777 78999999999999999999999999999999999888 99999999
Q ss_pred HHHHHhc
Q 039757 233 IDTYAKC 239 (415)
Q Consensus 233 i~~~~~~ 239 (415)
+..|+..
T Consensus 217 ~~~F~s~ 223 (501)
T 4g26_A 217 EEWFKSE 223 (501)
T ss_dssp HHHHHSH
T ss_pred HHHHhcC
Confidence 9998864
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=5.3e-25 Score=204.14 Aligned_cols=350 Identities=8% Similarity=-0.015 Sum_probs=275.1
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
+.......+..+.... ..++.+|..+...+.+.|++++|+.+|+++. ...+. +..+|..+..++...|+
T Consensus 7 ~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l---~~~p~------~~~~~~~l~~~~~~~g~ 75 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAV---DGDPD------NYIAYYRRATVFLAMGK 75 (450)
T ss_dssp ------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCc------cHHHHHHHHHHHHHCCC
Confidence 3344444555555443 2677889999999999999999999999998 55544 78899999999999999
Q ss_pred CchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-h---hhHHHHH------------HHHH
Q 039757 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-L---VTWNVMI------------TGLV 145 (415)
Q Consensus 84 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~li------------~~~~ 145 (415)
++.|...|+.+.+.+ +.+...+..+..+|.+.|++++|...|+.+.+ |+ . ..+..++ ..+.
T Consensus 76 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 76 SKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 45678899999999999999999999999875 33 3 5565554 4488
Q ss_pred hhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC
Q 039757 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225 (415)
Q Consensus 146 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (415)
+.|++++|...|+++.+.+ +.+...+..+..++...|++++|...++.+.+. .|.+
T Consensus 155 ~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 210 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVC----------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDN 210 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSC
T ss_pred HcCCHHHHHHHHHHHHHhC----------------------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 9999999999999986422 335566777888888999999999999999887 4668
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHH------------HHHHHccCchHHHHHHHHHHHhcCCCC
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSI------------ISGFAMHGMGKAAVENFERMQKVGLKP 292 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~g~~p 292 (415)
..++..++.+|...|++++|...|+++....|+ ...+..+ ...+...|++++|...|+++.+. .|
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EP 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 999999999999999999999999999887664 4445554 78899999999999999999884 56
Q ss_pred ChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 293 NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 293 ~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
+...+... .+..+...+.+.|++++|...++++....| +..+|..+..+|...|++++|...++++.+..
T Consensus 289 ~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 289 SIAEYTVR---------SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp SSHHHHHH---------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cchHHHHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 64332211 133478889999999999999998765434 67899999999999999999999999999999
Q ss_pred cCCCccHHHHHHH------------HHhcC-----chhhHHHHHHH
Q 039757 372 RGNGGDYVLMYNI------------LAGVG-----RYVDAERLRRV 400 (415)
Q Consensus 372 ~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 400 (415)
|.+...+..+..+ |...| +.+++.+.+++
T Consensus 360 p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9888888888744 33344 45566766665
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.6e-24 Score=201.17 Aligned_cols=375 Identities=9% Similarity=-0.081 Sum_probs=262.7
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
.++...|...|...++.. ||+.+|..+...|.+.|++++|+..|+++. ...+. +..+|..+..++...
T Consensus 19 ~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKAL---ELKPD------YSKVLLRRASANEGL 86 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCSC------CHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh---ccChH------HHHHHHHHHHHHHHH
Confidence 467889999999998876 789999999999999999999999999998 66555 778999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHh-----------------------------------
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF----------------------------------- 126 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~----------------------------------- 126 (415)
|++++|...|+.+.+.+ +++......++..+........+.+.+
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999998776 233333333333222211111111111
Q ss_pred ---cccC---------CC-chhhHHHHHHHHHh---hCCHHHHHHHHhhCCC----------------C-ChhHHHHHHH
Q 039757 127 ---DELP---------ER-NLVTWNVMITGLVK---WGELEYARSLFEEMPC----------------R-NVVSWTGILD 173 (415)
Q Consensus 127 ---~~~~---------~~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~----------------~-~~~~~~~li~ 173 (415)
.... +| +...+......+.. .|++++|...|+++.+ | +...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 0000 01 12233333333332 5666666666655433 1 1234555555
Q ss_pred HHHhccCCCCcc--------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 174 GYTRMNRSNGAS--------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 174 ~~~~~~~~~~a~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
.+...|++++|. ..|+...+..+...+...|+++.|...++.+.+. .|.+..++..+..+|...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHH
Confidence 566666665555 2233666777777788888888888888888876 455777888888888888888888
Q ss_pred HHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCH
Q 039757 246 LKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRL 324 (415)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~ 324 (415)
...|+++....| +...+..+...+...|++++|...++++.+. .|+.... +..+...|...|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-------------~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEV-------------PNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHH-------------HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHH-------------HHHHHHHHHHCCCH
Confidence 888888877644 5667888888888888888888888888764 3332211 22366668888888
Q ss_pred HHHHHHHhcCCCCCc---C----HHHHHHHHHHHhh---cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhH
Q 039757 325 EQAEKIALGIPSEIT---D----VVVRRILLGACSF---HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p---~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 394 (415)
++|...++.+....| + ...+..+...+.. .|++++|...++++.+..|.+..++..++.+|.+.|++++|
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence 888888877654422 2 3377788888888 88888888888888888887888888888888888888888
Q ss_pred HHHHHHHhhhcc
Q 039757 395 ERLRRVMDERNA 406 (415)
Q Consensus 395 ~~~~~~m~~~~~ 406 (415)
...+++..+.+.
T Consensus 469 ~~~~~~a~~~~~ 480 (514)
T 2gw1_A 469 ITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhcc
Confidence 888888776553
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.1e-23 Score=195.33 Aligned_cols=320 Identities=12% Similarity=0.014 Sum_probs=266.1
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 143 (415)
+...+..+...+.+.|+++.|..+|+.+.+.. +.+..++..+..+|...|++++|...|+.+.+ .+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 77889999999999999999999999998874 45788899999999999999999999999875 357789999999
Q ss_pred HHhhCCHHHHHHHHhhCCCCC---h---hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhh
Q 039757 144 LVKWGELEYARSLFEEMPCRN---V---VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~---~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (415)
|.+.|++++|.+.|+++.+.+ . ..+..++..+.. ..+..+...+...|+++.|...++.+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------QRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999987533 2 445555444322 223445566888999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
+. .|.+..++..++.+|.+.|++++|.+.|+++.... .+..++..+..+|...|++++|...|+++... .|+...
T Consensus 171 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 246 (450)
T 2y4t_A 171 EV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR 246 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred Hh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHH
Confidence 87 57689999999999999999999999999998774 46889999999999999999999999999874 566655
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-----VVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
....+...... ..+..+...+.+.|++++|...|+++....|+ ...+..+...+.+.|++++|+..++++.+..
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 247 CFAHYKQVKKL-NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44332110000 00122477899999999999999988665454 4478888999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 372 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
|.+..++..++.+|...|++++|...++++.+..
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9899999999999999999999999999998754
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=3.6e-22 Score=189.32 Aligned_cols=356 Identities=9% Similarity=-0.047 Sum_probs=283.1
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
....|..+...+.+.|++++|+..|+++. ...+. +..+|..+..++.+.|++++|.+.++.+.+.. +.+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAI---ELDPN------EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH---hhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchH
Confidence 45678888899999999999999999998 66655 78899999999999999999999999998875 4567
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC-Cchh-----------------------------------------------
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE-RNLV----------------------------------------------- 135 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~----------------------------------------------- 135 (415)
..+..+..++...|++++|...|+.+.. |+..
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 7888899999999999999998864421 1100
Q ss_pred ----------------------hHHHHHHHHH--------hhCCHHHHHHHHhhCCC--CC--------hhHHHHHHHHH
Q 039757 136 ----------------------TWNVMITGLV--------KWGELEYARSLFEEMPC--RN--------VVSWTGILDGY 175 (415)
Q Consensus 136 ----------------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~--~~--------~~~~~~li~~~ 175 (415)
....+...+. ..|++++|..+|+++.+ |+ ..++..+...+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence 1111111111 12478899999988864 32 22466667778
Q ss_pred HhccCCCCcc--------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039757 176 TRMNRSNGAS--------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247 (415)
Q Consensus 176 ~~~~~~~~a~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (415)
...|++++|. ..|+...+..+...+...|+++.|...++.+.+. .|.+..++..+..++...|++++|.+
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 8888888887 5556778888999999999999999999999987 46688999999999999999999999
Q ss_pred HHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHH
Q 039757 248 LFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ 326 (415)
Q Consensus 248 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~ 326 (415)
.|+++....| +...+..+...|...|++++|...++++.+. .|+.... +..+...+...|++++
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-------------~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEV-------------PTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHH-------------HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH-------------HHHHHHHHHHhCCHHH
Confidence 9999988755 5678999999999999999999999999886 3544321 2236677899999999
Q ss_pred HHHHHhcCCCCCc-------CHHHHHHHHHHHhhc----------CChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 327 AEKIALGIPSEIT-------DVVVRRILLGACSFH----------GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 327 A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
|...|+++....| ....+......+... |++++|...++++.+..|.+..++..++.+|.+.|
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9999987654411 222344455667777 99999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhhhcc
Q 039757 390 RYVDAERLRRVMDERNA 406 (415)
Q Consensus 390 ~~~~A~~~~~~m~~~~~ 406 (415)
++++|.+.+++..+...
T Consensus 477 ~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 477 KIDEAIELFEDSAILAR 493 (537)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 99999999999887653
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2.1e-21 Score=173.99 Aligned_cols=321 Identities=7% Similarity=-0.038 Sum_probs=249.7
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
|+..+..+...+...|++++|+..|+++. ...+. +..++..+...+...|+++.|...++.+.+.. +.+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l---~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAV---DGDPD------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcc
Confidence 56778889999999999999999999998 65555 78899999999999999999999999998875 3467
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C----chhhHHHH------------HHHHHhhCCHHHHHHHHhhCCCCCh
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R----NLVTWNVM------------ITGLVKWGELEYARSLFEEMPCRNV 165 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~ 165 (415)
..+..+...+...|++++|...|+...+ | +...+..+ ...+...|++++|.+.|+++.+.+
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 150 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC- 150 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 7888899999999999999999998865 4 23344444 577888899999999998875322
Q ss_pred hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 166 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
+.+...+..+...+...|++++|...++.+.+. .|.+..++..+...|...|++++|
T Consensus 151 ---------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 151 ---------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred ---------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 234556777777888888999999999988887 566888888899999999999999
Q ss_pred HHHHHHhhhhCCC-hhhHH------------HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchH
Q 039757 246 LKLFEDISVERKN-LVSWT------------SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG 312 (415)
Q Consensus 246 ~~~~~~~~~~~~~-~~~~~------------~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 312 (415)
.+.|++.....|+ ...+. .+...+...|++++|...++++.+. .|+...+..-+ +.
T Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~---------~~ 276 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRS---------KE 276 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH---------HH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHH---------HH
Confidence 9999888876553 33333 2256688888999999999888875 35543321110 22
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
.+...+...|++++|.+.++......| +..++..+...+...|++++|.+.++++.+..|.+...+..+..+....+
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 366678888899999888887765434 66788888888888899999999999988888887777777776665443
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.5e-21 Score=183.85 Aligned_cols=353 Identities=11% Similarity=-0.007 Sum_probs=277.0
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
....|-.....+.+.|++++|+..|+++. ... | +..+|..+..++...|+++.|.+.++.+.+.+ +.+.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~----p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 73 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWAL---ELK----E---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYS 73 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHC----C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHH---hcC----c---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHH
Confidence 45567788899999999999999999998 433 5 88899999999999999999999999999876 4567
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHH-----------------------
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLF----------------------- 157 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~----------------------- 157 (415)
..+..+..+|.+.|++++|...|+.+.+ ++......++..+.+......+.+.+
T Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
T 2gw1_A 74 KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD 153 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh
Confidence 8899999999999999999999998764 23333444444443332222222222
Q ss_pred ---------------hhCC---------CC-ChhHHHHHHHHHHh---ccCCCCcc-------C----------------
Q 039757 158 ---------------EEMP---------CR-NVVSWTGILDGYTR---MNRSNGAS-------T---------------- 186 (415)
Q Consensus 158 ---------------~~m~---------~~-~~~~~~~li~~~~~---~~~~~~a~-------~---------------- 186 (415)
.... .| +...+......+.. .|++++|. .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (514)
T 2gw1_A 154 KQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233 (514)
T ss_dssp ---CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH
T ss_pred hccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC
Confidence 1111 01 12333333443443 66666665 1
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
+.+...+..+...+...|+++.|...++.+.+. .|. ...+..+..+|...|++++|.+.|+++....| +...+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 310 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHH
Confidence 223456778888899999999999999999987 454 88899999999999999999999999988754 67789999
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHH
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVR 344 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 344 (415)
...|...|++++|...++++.+. .|+.... +..+...|...|++++|...++.+....| +..++
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 375 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKEL--DPENIFP-------------YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP 375 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHT--CSSCSHH-------------HHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--ChhhHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHH
Confidence 99999999999999999999885 3443221 22367779999999999999988765534 56788
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccCCCc------cHHHHHHHHHh---cCchhhHHHHHHHHhhhc
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGG------DYVLMYNILAG---VGRYVDAERLRRVMDERN 405 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~ 405 (415)
..+...+...|++++|...++++.+..+.+.. .+..++.++.. .|++++|...++++.+..
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998888655 89999999999 999999999999988754
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.1e-20 Score=169.28 Aligned_cols=321 Identities=12% Similarity=0.002 Sum_probs=257.2
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~ 143 (415)
+...+..+...+...|++++|...|+.+.+.. +.+..++..+..++...|++++|...|+.+.+ | +...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 55678889999999999999999999998875 45678888999999999999999999999874 4 56789999999
Q ss_pred HHhhCCHHHHHHHHhhCCCCCh------hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhh
Q 039757 144 LVKWGELEYARSLFEEMPCRNV------VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (415)
+...|++++|...|++..+.++ ..+..+...+. ...+......+...|++++|...++.+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------MQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999999999875332 12222211110 1123344677889999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
+. .|.+..++..+..++...|++++|.+.++++....| +..++..+...+...|++++|...|++..+. .|+...
T Consensus 148 ~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~ 223 (359)
T 3ieg_A 148 EV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR 223 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred Hh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchH
Confidence 87 566899999999999999999999999999988754 6788999999999999999999999999875 455443
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH-----HHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDV-----VVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
....+..... -.....+...+.+.|++++|...++++....|+. ..+..+...+...|++++|...++++.+..
T Consensus 224 ~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 224 CFAHYKQVKK-LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2221111000 0001124667899999999999998876553442 235567788999999999999999999999
Q ss_pred cCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 372 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
|.++.++..++.+|...|++++|.+.+++..+.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 98999999999999999999999999999887653
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.5e-20 Score=178.14 Aligned_cols=353 Identities=10% Similarity=-0.024 Sum_probs=274.4
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
.++...|...|...++..+ .++.+|..+...|.+.|++++|++.|+++. ...+. +..++..+...+...
T Consensus 38 ~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKAL---EIKPD------HSKALLRRASANESL 106 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCc------hHHHHHHHHHHHHHc
Confidence 4677888999999887663 467889999999999999999999999999 66655 788999999999999
Q ss_pred CCCchHHHHHHHHHHcCCC-------------------------------------Cchh--------------------
Q 039757 82 SYPNLGTQLHAVISKVGFQ-------------------------------------SHVY-------------------- 104 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~-------------------------------------~~~~-------------------- 104 (415)
|++++|...|+.+ ..... |+..
T Consensus 107 g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp TCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred CCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 9999999999643 21111 0000
Q ss_pred ----------hHHHHHHHHHc--------CCChhHHHHHhcccCC--Cc--------hhhHHHHHHHHHhhCCHHHHHHH
Q 039757 105 ----------VNTALVNMYVS--------LGFLKDSSKLFDELPE--RN--------LVTWNVMITGLVKWGELEYARSL 156 (415)
Q Consensus 105 ----------~~~~li~~~~~--------~g~~~~a~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~a~~~ 156 (415)
....+...+.. .|++++|..+|+.+.+ |+ ..++..+...+...|++++|.+.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 11112222211 1478899999988875 33 23577777888999999999999
Q ss_pred HhhCC--CCChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC
Q 039757 157 FEEMP--CRNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225 (415)
Q Consensus 157 ~~~m~--~~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (415)
|++.. .|+...+..+...+...|++++|. .+.+..++..+...+...|++++|...++.+.+. .|.+
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 343 (537)
T 3fp2_A 266 LQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPEN 343 (537)
T ss_dssp HHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCC
Confidence 99987 466778888999999999999988 4456778899999999999999999999999987 4667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
...+..+..+|...|++++|.+.|+++....| +...+..+...+...|++++|...|+++.+.........+.. ..
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~- 420 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI--GP- 420 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT--HH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH--HH-
Confidence 88999999999999999999999999988755 567899999999999999999999999876531111111000 00
Q ss_pred ccCCcchHHHHHHhHhc----------CCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 305 SHGGLHYGCLVDMLGRA----------GRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
+..+...|... |++++|...|+......| +...+..+...|...|++++|.+.|+++.+..|.
T Consensus 421 ------~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 421 ------LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp ------HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ------HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 11134456667 999999999998766534 5678999999999999999999999999999887
Q ss_pred CCcc
Q 039757 374 NGGD 377 (415)
Q Consensus 374 ~~~~ 377 (415)
+...
T Consensus 495 ~~~~ 498 (537)
T 3fp2_A 495 MDEK 498 (537)
T ss_dssp CHHH
T ss_pred cHHH
Confidence 5544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=6.7e-19 Score=155.83 Aligned_cols=286 Identities=12% Similarity=-0.020 Sum_probs=195.3
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 22 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
..++..+..+...+...|++++|+++|+++. ...+. +...+..++..+...|++++|..+++.+.+.. +.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l---~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 88 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVM---EKDPF------HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PS 88 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCC------ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cC
Confidence 4566677788888888899999999888888 55544 66677777888888888888988888888764 34
Q ss_pred chhhHHHHHHHHHcCC-ChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 039757 102 HVYVNTALVNMYVSLG-FLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 177 (415)
+...+..+...+...| ++++|...|+...+ .+...|..+...+...|++++|.+.|++..+.+
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 155 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM------------- 155 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------------
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------------
Confidence 6677777888888888 88888888887664 345678888888888888888888888775321
Q ss_pred ccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--
Q 039757 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-- 255 (415)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 255 (415)
+.+...+..+...+...|++++|...++...+. .|.+..++..+...+...|++++|...|+++...
T Consensus 156 ---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 156 ---------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp ---------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ---------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 112334444566666677777777777777765 4556677777777777777777777777776554
Q ss_pred --------CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHH
Q 039757 256 --------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 256 --------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A 327 (415)
+.+..++..+..+|...|++++|...+++..+. .|+.... +..+...|.+.|++++|
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~-------------~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNAST-------------YSAIGYIHSLMGNFENA 289 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHH-------------HHHHHHHHHHHTCHHHH
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHH-------------HHHHHHHHHHhccHHHH
Confidence 122456667777777777777777777776654 2332211 22255556667777777
Q ss_pred HHHHhcCCCCCc-CHHHHHHHHHHH-hhcCC
Q 039757 328 EKIALGIPSEIT-DVVVRRILLGAC-SFHGN 356 (415)
Q Consensus 328 ~~~~~~~~~~~p-~~~~~~~l~~~~-~~~~~ 356 (415)
.+.+++.....| +...+..+..++ ...|+
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 777766665534 444555555555 34444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-19 Score=160.91 Aligned_cols=287 Identities=11% Similarity=-0.039 Sum_probs=240.0
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 143 (415)
+...+..+...+...|+++.|.++++.+.+.. +.+...+..++.++...|++++|..+++++.+ .+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 77788889999999999999999999998875 45666777788999999999999999998875 357789999999
Q ss_pred HHhhC-CHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 144 LVKWG-ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 144 ~~~~g-~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
+...| ++++|.+.|++..+.+ +.+...+..+...+...|++++|...++.+.+. .
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~ 155 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE----------------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--M 155 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC----------------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--T
T ss_pred HHHhhhhHHHHHHHHHHHHHhC----------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--c
Confidence 99999 9999999999986533 224556778888889999999999999999987 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC-------CC-
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK-------PN- 293 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-------p~- 293 (415)
|.+...+..+...|...|++++|.+.|+++....| +...+..+...+...|++++|...+++..+..-. |+
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 235 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTC
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHH
Confidence 55778888899999999999999999999988754 6788999999999999999999999998764210 22
Q ss_pred hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 294 ~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
... +..+...|...|++++|...+++.....| +...+..+...+...|++++|.+.++++.+..|
T Consensus 236 ~~~--------------~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 236 EPL--------------LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp CHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHH--------------HHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 223 23377779999999999999988765533 567889999999999999999999999999999
Q ss_pred CCCccHHHHHHHHH-hcCchh
Q 039757 373 GNGGDYVLMYNILA-GVGRYV 392 (415)
Q Consensus 373 ~~~~~~~~l~~~~~-~~g~~~ 392 (415)
.+...+..+..++. ..|+.+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC--
T ss_pred CchHHHHHHHHHHHHHhCchh
Confidence 89999999998884 555543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.5e-19 Score=162.73 Aligned_cols=303 Identities=11% Similarity=-0.057 Sum_probs=199.6
Q ss_pred hhcCCChHHHHH-HHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039757 35 YSLADSPKKAFL-LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113 (415)
Q Consensus 35 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 113 (415)
+.-.|++++|++ .|++.. ..... .+..+...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~---~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGY---QFEEE--NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQ 108 (368)
T ss_dssp -----------CHHHHCCC---CCCSS--CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHH---hcCCC--CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334577888887 777655 22222 111145678888888899999999999999988765 45677788888888
Q ss_pred HcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCch
Q 039757 114 VSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190 (415)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 190 (415)
.+.|++++|...|+.+.+ .+..++..+...+...|++++|.+.|+++...++.. .
T Consensus 109 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------------~ 166 (368)
T 1fch_A 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY----------------------A 166 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT----------------------G
T ss_pred HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----------------------H
Confidence 899999999998887764 356788888888889999999998888875322100 0
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC---hhhHHHHHH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN---LVSWTSIIS 267 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~li~ 267 (415)
..+... +.... . .. ....+..+...+ ..|++++|...|+++....|+ ..++..+..
T Consensus 167 ~~~~~~-------~~~~~----------~--~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 167 HLVTPA-------EEGAG----------G--AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp GGCC-----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred HHHHHH-------HHHhh----------h--hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 000000 00000 0 00 001111222233 667777777777777766444 566777777
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
.|...|++++|...|+++... .|+... .+..+...|...|++++|...|+++....| +..++..
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~--~~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSV--RPNDYL-------------LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CcCCHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 777778888888777777664 343321 122356667778888888888776654433 5668888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCC-----------CccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGN-----------GGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
+...|...|++++|...++++.+..|.+ ..+|..++.+|...|++++|..++++.
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 8999999999999999999999888776 678999999999999999999887643
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=6.7e-18 Score=146.43 Aligned_cols=196 Identities=11% Similarity=0.071 Sum_probs=94.2
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~ 270 (415)
.++..+...+...++.++|...++.+...+..|.+...+..+...+...|++++|.+.+++ +.+...+..++..|.
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILL 141 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 3334444444444444444444444444433344444455555555555555555555554 234445555555555
Q ss_pred ccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHH
Q 039757 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLG 349 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 349 (415)
+.|++++|.+.|+++.+. .|+.... .+..+ ++..+...|++++|..+|+++....| +...++.+..
T Consensus 142 ~~g~~~~A~~~l~~~~~~--~p~~~~~-~l~~a----------~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 142 KLDRLDLARKELKKMQDQ--DEDATLT-QLATA----------WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHH----------HHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhh--CcCcHHH-HHHHH----------HHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 555555555555555543 2333211 11111 22223334555555555555443322 3445555555
Q ss_pred HHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh-HHHHHHHHhh
Q 039757 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD-AERLRRVMDE 403 (415)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 403 (415)
++...|++++|...++++++..|.++.++..++..+...|+.++ +.++++++.+
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555543 3445554443
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.3e-18 Score=154.55 Aligned_cols=285 Identities=14% Similarity=0.082 Sum_probs=136.6
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
+.+.|.++++.+ +++.+|..+..++.+.|++++|++.|.+.. |..+|..++..+...|+
T Consensus 18 ~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika~--------------D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 18 NLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------------DPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcCC--------------CHHHHHHHHHHHHhCCC
Confidence 455666666665 445699999999999999999999997653 77799999999999999
Q ss_pred CchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCC
Q 039757 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR 163 (415)
Q Consensus 84 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 163 (415)
+++|..+++..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 99999988887764 45678899999999999999999988864 77789999999999999999999999988
Q ss_pred ChhHHHHHHHHHHhccCCCCcc----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc
Q 039757 164 NVVSWTGILDGYTRMNRSNGAS----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239 (415)
Q Consensus 164 ~~~~~~~li~~~~~~~~~~~a~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (415)
..|..++.++.+.|++++|. ...+..+|..++.+|...|+++.|......+.. .+.-...++..|.+.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~------~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDR 220 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT------CHHHHHHHHHHHHHT
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHh------CHhhHHHHHHHHHHC
Confidence 47999999999999999988 334788999999999999999999776655331 444455799999999
Q ss_pred CCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHh
Q 039757 240 GCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDML 318 (415)
Q Consensus 240 g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~ 318 (415)
|++++|..+++...... .....|+-|.-.|++-+ +++..+.++... +..-...++++|.+. ..|..++..|
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p~k~~ehl~~~~------~~ini~k~~~~~~~~-~~w~e~~~ly 292 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFW------SRVNIPKVLRAAEQA-HLWAELVFLY 292 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS------TTSCHHHHHHHHHTT-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH------HHhcCcHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999987763 35567888877777653 444444444332 234445566666543 3577899999
Q ss_pred HhcCCHHHHHHHHhc
Q 039757 319 GRAGRLEQAEKIALG 333 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~ 333 (415)
...++++.|....-+
T Consensus 293 ~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 293 DKYEEYDNAIITMMN 307 (449)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HhhchHHHHHHHHHh
Confidence 999999999876543
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.8e-17 Score=153.11 Aligned_cols=370 Identities=8% Similarity=-0.066 Sum_probs=227.4
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc--CCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTH--SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 98 (415)
.......||.+...+...|++++|++.|++..++... +....|. ...+|+.+...+...|++++|...+++..+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~--~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR--SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT--THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 3344668999999999999999999999988753221 1110021 45689999999999999999999999886531
Q ss_pred ------CC-CchhhHHHHHHHHHc--CCChhHHHHHhcccCC--C-chhhHHHHHHH---HHhhCCHHHHHHHHhhCCC-
Q 039757 99 ------FQ-SHVYVNTALVNMYVS--LGFLKDSSKLFDELPE--R-NLVTWNVMITG---LVKWGELEYARSLFEEMPC- 162 (415)
Q Consensus 99 ------~~-~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~- 162 (415)
.. ....++..+..++.. .+++++|+..|++..+ | ++..+..+..+ +...++.++|++.|++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 11 123456555555554 4579999999998764 4 34455555544 3456777888888877652
Q ss_pred --CChhHHHHHHHHHHhcc----CCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 163 --RNVVSWTGILDGYTRMN----RSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 163 --~~~~~~~~li~~~~~~~----~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
.+...+..+...+...+ +.++|. .+.+...+..+...+...|+++.|...+.+..+. .|.+..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 34455555555554443 334443 3445566777777888888888888888888776 466777
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 228 VSNCLIDTYAKC-------------------GCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 228 ~~~~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
++..+..+|... +..+.|...|++.....| +..++..+...|...|++++|...|++..+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 777776665432 234566777777666544 456677888888888888888888888776
Q ss_pred cCCCCChhhHHHHHHHHccCCcchHHHHH-HhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 288 VGLKPNRVTFLSVLNACSHGGLHYGCLVD-MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 288 ~g~~p~~~~~~~ll~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
.. |+......+... +.. .+...|+.++|+..|++.....|+..... +....+.+++++
T Consensus 363 ~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~ 421 (472)
T 4g1t_A 363 KE--LTPVAKQLLHLR----------YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKM 421 (472)
T ss_dssp SC--CCHHHHHHHHHH----------HHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHH
T ss_pred cC--CCChHHHHHHHH----------HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHH
Confidence 53 333221111111 111 23456788888888776554434433222 223445566777
Q ss_pred HHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCCCCCCC
Q 039757 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415 (415)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 415 (415)
..+.+|.++.+|..++.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 422 ~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 7778888999999999999999999999999999999887776777764
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1.2e-17 Score=144.93 Aligned_cols=274 Identities=9% Similarity=-0.037 Sum_probs=214.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCch--hhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHV--YVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 152 (415)
++.....|+++.|+..++..... .|+. .....+..+|...|+++.|+..++....|+..++..+...+...|+.++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHH
Confidence 45566789999999988876443 4443 4556678999999999999999988655677889999999999999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHH
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 231 (415)
|++.++++...+ ..| +...+..+...+...|++++|...++. |.+...+..
T Consensus 84 A~~~l~~ll~~~---------------------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~ 135 (291)
T 3mkr_A 84 IVAELDREMSRS---------------------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAM 135 (291)
T ss_dssp HHHHHHHHHHSC---------------------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHH
T ss_pred HHHHHHHHHhcc---------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHH
Confidence 999999875321 112 344556666788899999999999987 458899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCChhhH---HHHHHHHHccCchHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHccC
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSW---TSIISGFAMHGMGKAAVENFERMQKVGLKPN-RVTFLSVLNACSHG 307 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 307 (415)
++..|.+.|++++|.+.|+++....|+.... ..++..+...|++++|..+|+++.+. .|+ ...++
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~--------- 204 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLN--------- 204 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHH---------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHH---------
Confidence 9999999999999999999999876664322 22334455669999999999999986 444 33333
Q ss_pred CcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHH-HHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 308 GLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEM-GERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
.+...+.+.|++++|...|++.....| +..++..++..+...|+.++ +.++++++.+..|.++. +.+..
T Consensus 205 -----~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~ 275 (291)
T 3mkr_A 205 -----GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYR 275 (291)
T ss_dssp -----HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHH
T ss_pred -----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHH
Confidence 367779999999999999998776645 67789999999999999876 67999999999998774 34556
Q ss_pred HhcCchhhHHHHH
Q 039757 386 AGVGRYVDAERLR 398 (415)
Q Consensus 386 ~~~g~~~~A~~~~ 398 (415)
.+.+.++++..-|
T Consensus 276 ~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 276 AKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6777777776544
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=4.1e-16 Score=145.99 Aligned_cols=344 Identities=13% Similarity=-0.000 Sum_probs=271.1
Q ss_pred hHHHHHHHHHHhhc----CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh----cCCCchHHHHHHHHH
Q 039757 24 HTLLFNTLLHFYSL----ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT----LSYPNLGTQLHAVIS 95 (415)
Q Consensus 24 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 95 (415)
++.++..+...|.. .+++++|+..|++.. ..| +...+..|...+.. .+++++|.+.|++..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~---~~~--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 106 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAA---EQG--------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA 106 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---HTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH---HCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 56777777777877 889999999999887 432 56678888888888 888999999999988
Q ss_pred HcCCCCchhhHHHHHHHHHc----CCChhHHHHHhcccCC-CchhhHHHHHHHHHh----hCCHHHHHHHHhhCCC-CCh
Q 039757 96 KVGFQSHVYVNTALVNMYVS----LGFLKDSSKLFDELPE-RNLVTWNVMITGLVK----WGELEYARSLFEEMPC-RNV 165 (415)
Q Consensus 96 ~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~-~~~ 165 (415)
+.| +...+..|...|.. .+++++|...|+...+ .+...+..|...|.. .+++++|++.|++..+ .+.
T Consensus 107 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~ 183 (490)
T 2xm6_A 107 LKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNV 183 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 765 44556667777777 7889999999988765 456678888888877 7889999999987653 466
Q ss_pred hHHHHHHHHHHh----ccCCCCcc-------CCCchHHHHhHHHHHhh----cCChhHHHHHHhhhhhcCCCCCCHHHHH
Q 039757 166 VSWTGILDGYTR----MNRSNGAS-------TEPSEITILAVLPAIWQ----NGAVRNCQLIHGYGEKRGFNAFDIRVSN 230 (415)
Q Consensus 166 ~~~~~li~~~~~----~~~~~~a~-------~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (415)
..+..+...|.. .++.++|. ...+...+..+...+.. .++.++|...|+...+.| +...+.
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~ 259 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHH
Confidence 677777777776 56665555 33455666677777765 789999999999998875 667778
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHcc-----CchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 231 CLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAMH-----GMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 231 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
.+..+|.. .+++++|.+.|++..+. .+...+..+...|... +++++|...|++..+.|. ...+.
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~--- 332 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---ATAQA--- 332 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HHHHH---
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HHHHH---
Confidence 88888888 89999999999998764 4566777888888877 899999999999988642 22222
Q ss_pred HHHccCCcchHHHHHHhHhcC---CHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh----cCChHHHHHHHHHHHHcccCC
Q 039757 302 NACSHGGLHYGCLVDMLGRAG---RLEQAEKIALGIPSEITDVVVRRILLGACSF----HGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 374 (415)
.+...|...| +.++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +
T Consensus 333 -----------~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~ 398 (490)
T 2xm6_A 333 -----------NLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L 398 (490)
T ss_dssp -----------HHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred -----------HHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C
Confidence 2555566555 789999999877665 577888888888888 899999999999998865 5
Q ss_pred CccHHHHHHHHHh----cCchhhHHHHHHHHhhhcc
Q 039757 375 GGDYVLMYNILAG----VGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 375 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 406 (415)
+..+..|...|.. .+++++|...+++..+.+.
T Consensus 399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7788899999998 8999999999999988873
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=3.9e-18 Score=153.51 Aligned_cols=263 Identities=11% Similarity=-0.037 Sum_probs=217.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
+...+..+...+.+.|++++|+..|+++. ...+. +..++..+...+...|+++.|...++.+.+.. +.+.
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 132 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAV---QQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQ 132 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHH---HSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCH
Confidence 45678899999999999999999999999 66555 78899999999999999999999999998876 4578
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHH---------------HHHHHHhhCCHHHHHHHHhhCCCCCh
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNV---------------MITGLVKWGELEYARSLFEEMPCRNV 165 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~~~ 165 (415)
.++..+..+|...|++++|...|+.+.+ |+ ...+.. .+..+...|++++|...|+++.+.++
T Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 212 (368)
T 1fch_A 133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCc
Confidence 8899999999999999999999998764 22 222221 23344489999999999999864221
Q ss_pred hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 166 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
..++..++..+...+...|++++|...++.+.+. .|.+..++..+..+|...|++++|
T Consensus 213 --------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 213 --------------------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp --------------------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 1124677888888899999999999999999987 566889999999999999999999
Q ss_pred HHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh------------hhHHHHHHHHccCCcchH
Q 039757 246 LKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR------------VTFLSVLNACSHGGLHYG 312 (415)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~------------~~~~~ll~~~~~~~~~~~ 312 (415)
.+.|+++....| +...+..+..+|...|++++|...|+++... .|+. .. |.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~--------------~~ 334 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENI--------------WS 334 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHH--------------HH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHH--------------HH
Confidence 999999988755 5778999999999999999999999998774 2322 23 33
Q ss_pred HHHHHhHhcCCHHHHHHHHhcC
Q 039757 313 CLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~ 334 (415)
.+...|...|+.++|..++++.
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHhCChHhHHHhHHHH
Confidence 4777899999999999988743
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=3.8e-18 Score=153.49 Aligned_cols=277 Identities=13% Similarity=-0.034 Sum_probs=212.2
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
+...|..+...+.+.|++++|+.+|+++. ...+. +..+|..+...+...|++++|...|+.+.+.. +.+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 133 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAI---LQDPG------DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNL 133 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 44568888999999999999999999998 55555 78899999999999999999999999998875 4567
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-----------hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHH
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--RN-----------LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 170 (415)
.++..+..+|...|++++|...|+++.+ |+ ...+..+...+.+.|++++|.+.|+++.+.++
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----- 208 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG----- 208 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC-----
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-----
Confidence 8888999999999999999999998865 22 12234457888899999999999998864221
Q ss_pred HHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 171 li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
...+...+..+...+...|++++|...++.+.+. .|.+..++..+..+|...|++++|.+.|+
T Consensus 209 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 209 ---------------DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp ---------------SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1225667888888899999999999999999987 57689999999999999999999999999
Q ss_pred HhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH
Q 039757 251 DISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK 329 (415)
Q Consensus 251 ~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (415)
++....| +..++..+..+|...|++++|...|+++.+. .|+...-... .........|..+...+...|+.+.+.+
T Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 272 RALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQV-PHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC-------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCccc-chhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 9988755 5788999999999999999999999998874 2221110000 0000001124457778999999999999
Q ss_pred HHhcCC
Q 039757 330 IALGIP 335 (415)
Q Consensus 330 ~~~~~~ 335 (415)
+.++-.
T Consensus 349 ~~~~~l 354 (365)
T 4eqf_A 349 ANLGDL 354 (365)
T ss_dssp HHTTCC
T ss_pred HHHhhH
Confidence 887643
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=2.6e-18 Score=154.60 Aligned_cols=270 Identities=10% Similarity=-0.044 Sum_probs=181.2
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 143 (415)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34456667777777777777777777776654 34566666677777777777777777776653 245566677777
Q ss_pred HHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC
Q 039757 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (415)
|...|++++|.+.|+++.+.++. +...+..+ .
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~----------------------~~~~~~~~--------------------------~ 174 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK----------------------YKYLVKNK--------------------------K 174 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH----------------------HHCC-------------------------------
T ss_pred HHccccHHHHHHHHHHHHHhCcc----------------------chHHHhhh--------------------------c
Confidence 77777777777777666431100 00000000 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
.....+..+...+...|++++|.+.|+++....| +..++..+...|...|++++|...|+++.+. .|+...
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~---- 248 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYS---- 248 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH----
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH----
Confidence 0233445567788888888888888888877754 4677888888888888888888888888775 344322
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC------
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG------ 373 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 373 (415)
.+..+...|...|++++|...|++.....| +..++..+..+|...|++++|...++++.+..|.
T Consensus 249 ---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 319 (365)
T 4eqf_A 249 ---------LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319 (365)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcc
Confidence 133366678888888888888887665534 4678888999999999999999999999988865
Q ss_pred ------CCccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 374 ------NGGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 374 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
+..+|..+..++...|+.+.+..+.++
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 320 VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 357788999999999999999887765
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.7e-17 Score=146.63 Aligned_cols=264 Identities=10% Similarity=-0.100 Sum_probs=216.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
+...|-.+...+...|++++|..+|+++. ...+. +..++..+...+...|+++.|.+.++.+.+.. +.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVC---QAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDI 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCH
Confidence 55567788899999999999999999998 65555 78889999999999999999999999998875 4577
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHH--------------HH-HHHhhCCHHHHHHHHhhCCCCCh
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVM--------------IT-GLVKWGELEYARSLFEEMPCRNV 165 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~ 165 (415)
.++..+...+...|++++|.+.++.+.+ | +...+..+ .. .+...|++++|.+.++++.+.+
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 168 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN- 168 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-
Confidence 8888899999999999999999998764 2 22333333 22 3778899999999999886422
Q ss_pred hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 166 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
+.+...+..+...+...|++++|...++.+.+. .|.+..++..+..++...|++++|
T Consensus 169 ---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 169 ---------------------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 234567778888889999999999999999987 566889999999999999999999
Q ss_pred HHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC-------------hhhHHHHHHHHccCCcch
Q 039757 246 LKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN-------------RVTFLSVLNACSHGGLHY 311 (415)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~~~~~ 311 (415)
.+.|+++....| +...+..+..+|...|++++|...++++... .|+ ... +
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~--------------~ 289 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSM--------------W 289 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHH--------------H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHH--------------H
Confidence 999999888755 5778999999999999999999999998875 343 222 3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
..+...+.+.|+.++|..+++.....
T Consensus 290 ~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 290 DFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34777899999999999999876543
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=4.9e-16 Score=145.41 Aligned_cols=359 Identities=9% Similarity=-0.025 Sum_probs=280.6
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhc----CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSL----ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~ 77 (415)
+++...|...|....+.| ++..+..+...|.. .+++++|++.|++.. ..| +...+..|...
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~---~~~--------~~~a~~~Lg~~ 120 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA---LKG--------LPQAQQNLGVM 120 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---HTT--------CHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---HCC--------CHHHHHHHHHH
Confidence 578888999999888765 46678888888988 899999999999998 433 56677888888
Q ss_pred HHh----cCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHc----CCChhHHHHHhcccCC-CchhhHHHHHHHHHh--
Q 039757 78 CVT----LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS----LGFLKDSSKLFDELPE-RNLVTWNVMITGLVK-- 146 (415)
Q Consensus 78 ~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~-- 146 (415)
+.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+.|+...+ .+...+..+...|..
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 888 789999999999998876 45566677777876 7899999999998765 567788889888888
Q ss_pred --hCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----ccCCCCcc-------CCCchHHHHhHHHHHhh----cCChhH
Q 039757 147 --WGELEYARSLFEEMPC-RNVVSWTGILDGYTR----MNRSNGAS-------TEPSEITILAVLPAIWQ----NGAVRN 208 (415)
Q Consensus 147 --~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~-------~~~~~~~~~~ll~~~~~----~~~~~~ 208 (415)
.++.++|.+.|++..+ .+...+..+...|.. .++.++|. ...+...+..+...+.. .++.++
T Consensus 198 g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 8999999999998764 456677777777775 55555555 34455566667777776 899999
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccC---chHHHHH
Q 039757 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC-----GCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVE 280 (415)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~ 280 (415)
|...|+...+.| ++..+..|...|... +++++|...|++..+. .+...+..+...|...| ++++|..
T Consensus 278 A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 278 ALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-GDATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 999999998775 677888899999887 8999999999998875 45667888888888766 8899999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh----cCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh---
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR----AGRLEQAEKIALGIPSEITDVVVRRILLGACSF--- 353 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~--- 353 (415)
+|++..+.| +...+.. |...|.. .++.++|.+.|+...+. .+...+..|...|..
T Consensus 353 ~~~~a~~~~---~~~a~~~--------------Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 353 WFRKAAAKG---EKAAQFN--------------LGNALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHHHHTT---CHHHHHH--------------HHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHCC---CHHHHHH--------------HHHHHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCC
Confidence 999998863 3333322 5666777 89999999999887665 467788888888887
Q ss_pred -cCChHHHHHHHHHHHHcccC---CCccHHHHHHHHHhcCchh--hHHHHHHHH
Q 039757 354 -HGNVEMGERVTRKVLEMERG---NGGDYVLMYNILAGVGRYV--DAERLRRVM 401 (415)
Q Consensus 354 -~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~--~A~~~~~~m 401 (415)
.++.++|...|++..+.++. ++.....+...+....... .|.+++++.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 89999999999999999953 5556666655554432222 255555554
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=4.6e-16 Score=147.12 Aligned_cols=182 Identities=8% Similarity=-0.091 Sum_probs=113.9
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-h-hhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-L-VSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
+|..+++...+. ..|.+...|..++..+.+.|++++|..+|+++...+|+ . ..|..++..+.+.|++++|..+|++.
T Consensus 304 ~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 304 EAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 666677666652 13546666777777777777777777777776665443 2 35666666666667777777777776
Q ss_pred HhcCCCCCh-hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHH
Q 039757 286 QKVGLKPNR-VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 286 ~~~g~~p~~-~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 363 (415)
.+. .|+. ..|.. .+ ++ .+...|+.++|..+|+......| +...|..++..+.+.|+.++|..+
T Consensus 383 l~~--~~~~~~~~~~--~a----------~~-~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 383 RED--ARTRHHVYVT--AA----------LM-EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HTC--TTCCTHHHHH--HH----------HH-HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred Hhc--cCCchHHHHH--HH----------HH-HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 653 2221 11110 00 11 12356777788777776655434 456777777777777888888888
Q ss_pred HHHHHHcccCCCc----cHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 364 TRKVLEMERGNGG----DYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 364 ~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
|+++....+.++. .|...+......|+.+.+..+.+++.+.-
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8887776554433 56666766777777777777777765543
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=6.3e-18 Score=149.35 Aligned_cols=276 Identities=11% Similarity=-0.035 Sum_probs=189.4
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 143 (415)
+...+..+...+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45566777888888888888888888887764 34667777788888888888888888887764 356677788888
Q ss_pred HHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC
Q 039757 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (415)
+...|++++|.+.|+++.+.++ .+...+..+... .+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~----------------------~~~~~~~~~~~~----------------------~~ 134 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP----------------------QYEQLGSVNLQA----------------------DV 134 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST----------------------TTTTC-------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC----------------------ccHHHHHHHhHH----------------------HH
Confidence 8888888888888887753221 001111111000 00
Q ss_pred CCHHHHHHH-HH-HHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 224 FDIRVSNCL-ID-TYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 224 ~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
+......+ .. .+...|++++|.+.++++....| +...+..+...|...|++++|...++++.+. .|+....
T Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~--- 208 (327)
T 3cv0_A 135 -DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQL--- 208 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH---
T ss_pred -HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH---
Confidence 01111112 22 35666777777777777766644 5666777777777788888888888777664 3432211
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC------
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG------ 373 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 373 (415)
+..+...|...|++++|...++++....| +..++..+...+...|++++|.+.++++.+..|.
T Consensus 209 ----------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 209 ----------WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp ----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred ----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 22355667778888888888776654433 5667888888899999999999999999988887
Q ss_pred ------CCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 374 ------NGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 374 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+...+..++.++.+.|++++|..++++..+
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 567888999999999999999998876544
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.7e-18 Score=152.55 Aligned_cols=278 Identities=10% Similarity=0.025 Sum_probs=129.7
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
+.|++++|.++++++ ++..+|..|+.++.+.|++++|++.|... +|..+|..++..+...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557788898888887 22348888999999999999999998664 5667889999999999999999997776
Q ss_pred CCC--CChhHHHHHHHHHHhccCCCCcc---CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH
Q 039757 160 MPC--RNVVSWTGILDGYTRMNRSNGAS---TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234 (415)
Q Consensus 160 m~~--~~~~~~~~li~~~~~~~~~~~a~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 234 (415)
..+ +++.+.+.++.+|.+.|+++++. ..|+..++..+...|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~ 156 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLAS 156 (449)
T ss_dssp ----------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT----------TCHHHHHH
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHH
Confidence 653 45577888888999988888776 5677779999999999999999999999976 46889999
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHH
Q 039757 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCL 314 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l 314 (415)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. +.|+. .. .+
T Consensus 157 ~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~--------------~l 213 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LE--------------EL 213 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HH--------------HH
T ss_pred HHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HH--------------HH
Confidence 999999999999999988 478999999999999999999965554322 33443 22 26
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhc--CChHHHHHHHHHHHHccc-----CCCccHHHHHHHHH
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFH--GNVEMGERVTRKVLEMER-----GNGGDYVLMYNILA 386 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~ 386 (415)
+..|.+.|++++|..+++..... .-....|+-|.-+|++- ++..+.++.|..-....+ .+...|..++-.|.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 77799999999999999877655 33556777777766654 344455555443333333 36789999999999
Q ss_pred hcCchhhHHHHH
Q 039757 387 GVGRYVDAERLR 398 (415)
Q Consensus 387 ~~g~~~~A~~~~ 398 (415)
..++++.|....
T Consensus 294 ~~~e~d~A~~tm 305 (449)
T 1b89_A 294 KYEEYDNAIITM 305 (449)
T ss_dssp HTTCHHHHHHHH
T ss_pred hhchHHHHHHHH
Confidence 999999988754
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=2.4e-18 Score=164.90 Aligned_cols=152 Identities=8% Similarity=-0.019 Sum_probs=126.3
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
--..+||++|++|++.|++++|.++|+.|.++...|+. | |..|||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~--P---dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL--L---TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT--C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC--C---CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 34568999999999999999999999998754456888 8 999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCCh-hHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC-----CChhHHHHHH
Q 039757 103 VYVNTALVNMYVSLGFL-KDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFEEMPC-----RNVVSWTGIL 172 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~-~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li 172 (415)
..|||++|+++++.|+. ++|.++|++|.+ ||..+|+.++.+..+.+-++.+.++...+.. +.+.+...|.
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 99999999999999985 789999999974 9999999999888877666555555544442 1133444455
Q ss_pred HHHHhcc
Q 039757 173 DGYTRMN 179 (415)
Q Consensus 173 ~~~~~~~ 179 (415)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=3.4e-14 Score=140.79 Aligned_cols=338 Identities=13% Similarity=0.085 Sum_probs=232.5
Q ss_pred hhHHHHHHhHhhccC-CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC
Q 039757 6 NVTTRIHSHLLTTNS-LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 84 (415)
+.-+++.+|...... -.-|+.--...+++|+..|++.+|++++++.. ..+ + +.+-+...-+.++....+. +.
T Consensus 965 ~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKiv---l~~-s--~fs~n~~LqnlLi~tAIka-D~ 1037 (1630)
T 1xi4_A 965 PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIV---LDN-S--VFSEHRNLQNLLILTAIKA-DR 1037 (1630)
T ss_pred HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH---cCC-C--cccccHHHHHHHHHHHHHh-Ch
Confidence 344566666544331 12333444678899999999999999999998 332 1 1111556667778777777 56
Q ss_pred chHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 85 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
.+..++.+.+... + ..-+...+...|.+++|..+|++.... ....+.++. ..|++++|.++.++.. +
T Consensus 1038 ~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nldrAiE~Aervn--~ 1104 (1630)
T 1xi4_A 1038 TRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDRAYEFAERCN--E 1104 (1630)
T ss_pred hhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHHHHHHHHhcC--C
Confidence 7777777766422 1 223667788899999999999998532 222233332 7788999999998774 4
Q ss_pred hhHHHHHHHHHHhccCCCCcc----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC
Q 039757 165 VVSWTGILDGYTRMNRSNGAS----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240 (415)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~a~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 240 (415)
..+|..+..++...|++++|. ..-+...|..++.++.+.|+++++.+.+....+.. + ++.+.+.++.+|++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~-e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--R-ESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--c-cccccHHHHHHHHhhc
Confidence 667889999999999999987 45667788889999999999999999998877763 2 4444556889999999
Q ss_pred CHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh
Q 039757 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR 320 (415)
Q Consensus 241 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~ 320 (415)
++++...+. .+++...|..+...|...|++++|..+|... ..|. .+...|.+
T Consensus 1182 rleele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~--------------rLA~tLvk 1233 (1630)
T 1xi4_A 1182 RLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG--------------RLASTLVH 1233 (1630)
T ss_pred CHHHHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH--------------HHHHHHHH
Confidence 888654443 1266677778889999999999999999884 1333 36666778
Q ss_pred cCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
.|++++|.+.+++.. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.
T Consensus 1234 Lge~q~AIEaarKA~----n~~aWkev~~acve~~Ef~LA~~cgl~I----iv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKAN----STRTWKEVCFACVDGKEFRLAQMCGLHI----VVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred hCCHHHHHHHHHHhC----CHHHHHHHHHHHhhhhHHHHHHHHHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887663 4466666666666666666665544321 12344555666666666666666666655
Q ss_pred Hh
Q 039757 401 MD 402 (415)
Q Consensus 401 m~ 402 (415)
..
T Consensus 1306 aL 1307 (1630)
T 1xi4_A 1306 AL 1307 (1630)
T ss_pred Hh
Confidence 43
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=159.14 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=105.5
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhh---hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChh
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGE---KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLV 260 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 260 (415)
......||++++.+|++.|++++|..+|..|. ..|+.| |..+||+||++||+.|++++|.++|++|.+. .||+.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 44556789999999999999999999998876 456666 9999999999999999999999999999988 59999
Q ss_pred hHHHHHHHHHccCch-HHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 261 SWTSIISGFAMHGMG-KAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 261 ~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
|||+||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 999999999999984 7899999999999999999999975544
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=8.3e-16 Score=127.35 Aligned_cols=200 Identities=16% Similarity=0.069 Sum_probs=160.3
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
+++...+..+...+.+.|++++|...|+...+. .|.+...+..+..++...|++++|...|++.....| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 455667888888999999999999999999987 687999999999999999999999999999988866 56789999
Q ss_pred HHHHHcc-----------CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC
Q 039757 266 ISGFAMH-----------GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 266 i~~~~~~-----------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (415)
..++... |++++|...|++..+. .|+.... +..+...|...|++++|+..|++.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~-------------~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPL-------------HLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHH-------------HHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999 9999999999999885 5665432 223667799999999999999876
Q ss_pred CCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 335 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
.....+...+..+..++...|++++|+..++++.+..|.++..+..++.++.+.|++++|...+++...
T Consensus 145 l~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 145 LALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 443246778899999999999999999999999999999999999999999999999999999987654
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=4.4e-14 Score=140.03 Aligned_cols=347 Identities=11% Similarity=0.074 Sum_probs=238.2
Q ss_pred CCchhhHHHHHHhHhhccC-CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 2 PSSNNVTTRIHSHLLTTNS-LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
.++|..|..+++.+.-.+. +.-+....+.++....+. +..+..+..++.. ......+...+..
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd---------------~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD---------------NYDAPDIANIAIS 1061 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh---------------hccHHHHHHHHHh
Confidence 5778889999998874443 345567777788777777 5566666666653 1113446777888
Q ss_pred cCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhC
Q 039757 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (415)
.|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 888888888888751 11222233322 6678888888888763 4567888888888888888888888665
Q ss_pred CCCChhHHHHHHHHHHhccCCCCcc--------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHH
Q 039757 161 PCRNVVSWTGILDGYTRMNRSNGAS--------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232 (415)
Q Consensus 161 ~~~~~~~~~~li~~~~~~~~~~~a~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 232 (415)
.|...|..++.++.+.|++++|. ..++....+.+..+|++.++++....+. + .++...+..+
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQV 1201 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHH
Confidence 56667777888888888888877 2222233445777788888777544442 1 2255566678
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc---
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--- 309 (415)
...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. -+..+|.-+-.+|...+.
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 88888888888888888775 35888888888888888888888776 234555555555433332
Q ss_pred -------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhc--CChHHHHHHHHHHHHccc-
Q 039757 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFH--GNVEMGERVTRKVLEMER- 372 (415)
Q Consensus 310 -------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~- 372 (415)
.+..++..|.+.|.+++|+++++......| ....|+-|...+.+. ++..++.++|..-....+
T Consensus 1269 A~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1269 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred HHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 456788889999999999999987765523 344666666666553 445555555554433322
Q ss_pred ----CCCccHHHHHHHHHhcCchhhHHHH
Q 039757 373 ----GNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 373 ----~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
.+...|..++-.|.+.|+++.|...
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 2567899999999999999999843
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=2e-15 Score=129.81 Aligned_cols=239 Identities=8% Similarity=-0.186 Sum_probs=166.3
Q ss_pred CChhHHHHHhcccCCC-------chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCc
Q 039757 117 GFLKDSSKLFDELPER-------NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189 (415)
Q Consensus 117 g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 189 (415)
|++++|+..|+++.+. +..+|..+...+...|++++|.+.|++..+.+ +.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------------~~~ 76 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----------------------PDM 76 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------CCC
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----------------------CCc
Confidence 4455555555544431 23455556666666666666666666554211 123
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 269 (415)
...+..+...+...|++++|...++.+.+. .|.+..++..+..+|...|++++|.+.|+++....|+.......+..+
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 344555555666666666666666666665 455788999999999999999999999999988767665555566666
Q ss_pred HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-----HHHH
Q 039757 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-----VVVR 344 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~ 344 (415)
...|++++|...+++..... .++...+. ++..+...++.++|.+.++......|. ..++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS-DKEQWGWN---------------IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 218 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS-CCCSTHHH---------------HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CcchHHHH---------------HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHH
Confidence 77799999999998877652 23333222 444577788889999999888776332 5688
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHH
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 398 (415)
..+...+...|++++|...++++.+..|.+.. ....++...|++++|.+.+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 89999999999999999999999998876543 4466788899999998876
No 37
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=3.1e-14 Score=134.60 Aligned_cols=182 Identities=8% Similarity=-0.060 Sum_probs=146.6
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHhhh-hCC-ChhhHHHHHHHHHc
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK-------CGCIF-------SALKLFEDISV-ERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~-~~~-~~~~~~~li~~~~~ 271 (415)
.+..+|++.+.. .|.++.+|..++..+.. .|+++ +|..+|++... ..| +...|..++..+.+
T Consensus 256 ~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 667788888886 57789999999988876 68987 99999999986 344 67889999999999
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHH
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGA 350 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 350 (415)
.|++++|..+|+++.+. .|+..+. .|..++..+.+.|++++|.++|++.....|. ...|......
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~------------~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTL------------VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchH------------HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 99999999999999984 5654321 1233666678899999999999988766332 3333322222
Q ss_pred -HhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 351 -CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 351 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+...|+.++|..+|++.++..|.++..+..++..+.+.|+.++|..+|++....+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 3368999999999999999999899999999999999999999999999998764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.1e-15 Score=125.34 Aligned_cols=224 Identities=12% Similarity=-0.059 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCC--C
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ--S 101 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--~ 101 (415)
....|..+...+...|++++|+..|+++. ... . +...+..+...+...|++++|.+.++.+.+.... +
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~-~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAW---ELH-K------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHS-C------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH---Hhh-c------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence 35678889999999999999999999999 554 5 7789999999999999999999999998775311 1
Q ss_pred c----hhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 039757 102 H----VYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175 (415)
Q Consensus 102 ~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 175 (415)
+ ..++..+...+...|++++|...|+...+ |+ ...+.+.|++++|...++++...+
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~----------- 135 (258)
T 3uq3_A 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN----------- 135 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-----------
Confidence 1 57888899999999999999999998875 44 245667788999999999876433
Q ss_pred HhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
+.+...+..+...+...|++++|...++...+. .|.+..++..+..+|...|++++|...|+++...
T Consensus 136 -----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 136 -----------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 224456777888889999999999999999987 4668999999999999999999999999999887
Q ss_pred CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 256 RK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 256 ~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.| +...|..+..++...|++++|...|++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55 5778999999999999999999999998774
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.6e-15 Score=125.57 Aligned_cols=225 Identities=10% Similarity=-0.027 Sum_probs=186.5
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHH
Q 039757 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIH 213 (415)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 213 (415)
...|..+...+...|++++|...|++..+. . .+...+..+..++...|++++|...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----------------------~-~~~~~~~~~~~~~~~~~~~~~A~~~~ 61 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL----------------------H-KDITYLNNRAAAEYEKGEYETAISTL 61 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------S-CCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------------h-ccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 356788888999999999999999887532 1 34556777788888899999999999
Q ss_pred hhhhhcCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 214 GYGEKRGFNAFD-------IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 214 ~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
....+.. |.+ ..++..+..+|...|++++|.+.|+++....|+. ..+...|++++|...++++.
T Consensus 62 ~~a~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 62 NDAVEQG--REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp HHHHHHH--HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHH
Confidence 9988752 322 6888999999999999999999999998876663 44666788999999999988
Q ss_pred hcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHH
Q 039757 287 KVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTR 365 (415)
Q Consensus 287 ~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 365 (415)
.. .|+.... +..+...+...|++++|...+++.....| +..++..+...+...|++++|...++
T Consensus 133 ~~--~~~~~~~-------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 133 YV--NPEKAEE-------------ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HC--CHHHHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hc--CcchHHH-------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 74 3443321 33477779999999999999988765534 67789999999999999999999999
Q ss_pred HHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
++.+..|.+...+..++.++...|++++|...+++..+.+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999988765
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=1.9e-14 Score=121.97 Aligned_cols=202 Identities=8% Similarity=-0.100 Sum_probs=174.7
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+..+...+...|++++|...++.+.+. .|.+..++..+..+|...|++++|.+.|+++....| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 456777888889999999999999999987 466889999999999999999999999999988755 67789999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHH
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRIL 347 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 347 (415)
|...|++++|...++++...+..|+.... +..+...|...|++++|.+.+++.....| +...+..+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRV-------------FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM 181 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 99999999999999999884445544332 22366778999999999999988765534 57788999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
...+...|++++|...++++.+..+.+...+..++..+...|++++|.++++++.+.+.
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999988888999999999999999999999999987654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=5.6e-14 Score=120.54 Aligned_cols=238 Identities=8% Similarity=-0.058 Sum_probs=191.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc--
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-- 102 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-- 102 (415)
+..+-.....+...|++++|+..|+++. ...+. +...+..+...+...|+++.|.+.++.+.+.+..|+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l---~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLE---AKKYN------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHH---HTTCC------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 3455667788999999999999999998 55555 677899999999999999999999999988432222
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
...|..+...+...|++++|+..|+...+ .+..+|..+...|...|++++|.+.|++..+.+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------- 138 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--------------- 138 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---------------
Confidence 22378889999999999999999998874 356789999999999999999999999998643
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhh-
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC---IFSALKLFEDISVE- 255 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~- 255 (415)
+.+...+..+...+...+++++|...++.+.+. .|.+...+..+..++...|+ +++|...|+++...
T Consensus 139 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 139 -------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp -------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 223444555552444455999999999999987 57678888889999999998 88899999887765
Q ss_pred --CCCh------hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 256 --RKNL------VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 256 --~~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
.|+. ..|..+...|...|++++|...|++..+. .|+....
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a 257 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKA 257 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHH
Confidence 1432 56888999999999999999999999885 5766553
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=5.7e-14 Score=116.63 Aligned_cols=202 Identities=9% Similarity=-0.077 Sum_probs=173.7
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
+...+..+...+...|++++|...++.+.+. .|.+...+..+..+|...|++++|.+.|+++....| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 4566778888899999999999999999987 466889999999999999999999999999988754 6778999999
Q ss_pred HHHcc-CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHH
Q 039757 268 GFAMH-GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRR 345 (415)
Q Consensus 268 ~~~~~-~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 345 (415)
.+... |++++|...++++.+.+..|+.... +..+...+...|++++|...++++....| +...+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIA-------------NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 99999 9999999999999884334443221 22367779999999999999988765544 577889
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHccc-CCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMER-GNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+...+...|++++|...++++.+..| .+...+..+...+...|+.++|..+++.+.+..
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999 888888899999999999999999999987654
No 43
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=2.8e-14 Score=132.83 Aligned_cols=349 Identities=10% Similarity=-0.063 Sum_probs=215.4
Q ss_pred CchhhHHHHHHhHhhc----c--CCcc-hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCC-CchhHHHH
Q 039757 3 SSNNVTTRIHSHLLTT----N--SLLH-HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF-DSFTYSFL 74 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~----~--~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~l 74 (415)
|+.+.|...|..-.+. + ...| ...+|+.+...|...|++++|...+++..++...-.. +..+ ...++..+
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~--~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS--PYRIESPELDCEE 142 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--SSCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc--ccchhhHHHHHHH
Confidence 4556666666544321 1 1123 3568999999999999999999999998765443322 2111 34566666
Q ss_pred HHHHHhc--CCCchHHHHHHHHHHcCCCCchhhHHHHHHH---HHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHh
Q 039757 75 IRTCVTL--SYPNLGTQLHAVISKVGFQSHVYVNTALVNM---YVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVK 146 (415)
Q Consensus 75 ~~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~ 146 (415)
..++... +++++|.+.|++..+.. +-+...+..+..+ +...++.++|++.+++..+ | +..++..+...+..
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 5555554 46889999999998865 2345555555444 4456778888888877653 3 45566666555544
Q ss_pred ----hCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhh--------
Q 039757 147 ----WGELEYARSLFEEMP---CRNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQ-------- 202 (415)
Q Consensus 147 ----~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~-------- 202 (415)
.|++++|.+.+++.. ..+...+..+...|...|++++|. .+-+..++..+...+..
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 467788999988765 345677888889999999988887 33334445554444322
Q ss_pred -----------cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhh----HHHHHH
Q 039757 203 -----------NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS----WTSIIS 267 (415)
Q Consensus 203 -----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~li~ 267 (415)
.+..+.|...++...+. .|.+..++..+...|...|++++|.+.|++.....++... +..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN 379 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 23456778888888776 4667888999999999999999999999998876454322 333332
Q ss_pred -HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHH
Q 039757 268 -GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRR 345 (415)
Q Consensus 268 -~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 345 (415)
.+...|+.++|+..|++..+. .|+....... .+.+.++++..... ..+..+|.
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~-----------------------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM-----------------------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH-----------------------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH-----------------------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 345679999999999998874 5665443322 12223333322222 23677999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHH
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 381 (415)
.+...|...|++++|++.|+++++.++.++.+..-+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999988766555443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=1.6e-14 Score=123.91 Aligned_cols=180 Identities=8% Similarity=-0.036 Sum_probs=114.0
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHc
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 271 (415)
+..+...+...|++++|...++...+. .|.+..++..+..+|...|++++|.+.|++.....| +...|..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 444444445555555555555555554 354677788888888888888888888888777644 45566666623334
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCC---HHHHHHHHhcCCCC---CcC-----
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGR---LEQAEKIALGIPSE---ITD----- 340 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~p~----- 340 (415)
.+++++|...|++..+. .|+.... +..+...+...|+ +++|...+++.... .|+
T Consensus 155 ~~~~~~A~~~~~~a~~~--~p~~~~~-------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL--KPNIYIG-------------YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHH-------------HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHh--CccchHH-------------HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 45888888888887774 4543221 1113444555565 66666666554432 233
Q ss_pred -HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 341 -VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 341 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
..+|..+...|...|++++|.+.++++.+..|.++.+...+.......+
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 2577788888999999999999999999999988877777766655443
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=9.3e-15 Score=133.02 Aligned_cols=301 Identities=15% Similarity=0.035 Sum_probs=207.4
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC----chhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD----SFTYSFLIRTCVTLSYPNLGTQLHAVISK 96 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (415)
..+....+......+...|++++|+..|+++. ...+. + ...+..+...+...|+++.|...++.+.+
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al---~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAV---QVGTE------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH---hcCcc------cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44566677788888999999999999999998 44333 3 35678888889999999999999988754
Q ss_pred c----CCCC-chhhHHHHHHHHHcCCChhHHHHHhcccCC-----Cc----hhhHHHHHHHHHhhCC-------------
Q 039757 97 V----GFQS-HVYVNTALVNMYVSLGFLKDSSKLFDELPE-----RN----LVTWNVMITGLVKWGE------------- 149 (415)
Q Consensus 97 ~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~------------- 149 (415)
. +-.| ...++..+...|...|++++|...+++..+ ++ ..++..+...|...|+
T Consensus 76 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 155 (406)
T 3sf4_A 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEF 155 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCC
T ss_pred HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhh
Confidence 3 2122 245677777888888999998888877654 12 3367777777777777
Q ss_pred -------HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 150 -------LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 150 -------~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
+++|.+.+++... +.... +..
T Consensus 156 ~~~a~~~~~~A~~~~~~al~-------------------------------------------------~~~~~---~~~ 183 (406)
T 3sf4_A 156 PEEVRDALQAAVDFYEENLS-------------------------------------------------LVTAL---GDR 183 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------------------------------------------------HHHHT---TCH
T ss_pred hhhHHHHHHHHHHHHHHHHH-------------------------------------------------HHHhc---cCc
Confidence 5555555544321 11111 111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCC-CCCh
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNR 294 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~ 294 (415)
+....++..+...|...|++++|.+.+++.... .++ ..++..+...|...|++++|...+++...... .++.
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 223456777788888888888888888877654 122 23677788888888888888888888764311 1111
Q ss_pred hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---CcC----HHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---ITD----VVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 295 ~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
..... .+..+...|...|++++|...+++.... .++ ..++..+...|...|++++|.+.+++.
T Consensus 264 ~~~~~----------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 264 AVEAQ----------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHH----------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 1334777788889999998888765433 112 457788888999999999999999998
Q ss_pred HHcccC------CCccHHHHHHHHHhcCchh
Q 039757 368 LEMERG------NGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 368 ~~~~~~------~~~~~~~l~~~~~~~g~~~ 392 (415)
.+.... ...++..+...+...|+..
T Consensus 334 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 334 LEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 876533 3457778888888888763
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=1.2e-14 Score=124.90 Aligned_cols=245 Identities=9% Similarity=-0.056 Sum_probs=149.7
Q ss_pred CchhhHHHHHHhHhhccCCcc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 3 SSNNVTTRIHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
++.+.|...+..+++.....| +..+|..+...+...|++++|...|+++. ...+. +..+|..+...+..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~------~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL---AIRPD------MPEVFNYLGIYLTQ 89 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCC------CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH---HcCCC------cHHHHHHHHHHHHH
Confidence 455667777777766543222 45667777777777777777777777777 44444 66777777777777
Q ss_pred cCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
.|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+.+.+ |+.......+..+...|++++|...++
T Consensus 90 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777777777777777654 33566677777777777777777777777653 444444444445566677777777776
Q ss_pred hCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC--CCCHHHHHHHHHHH
Q 039757 159 EMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN--AFDIRVSNCLIDTY 236 (415)
Q Consensus 159 ~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~ 236 (415)
+....+ +++...+ .+...+...++.++|...+......... |.+..++..+..+|
T Consensus 169 ~~~~~~----------------------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 169 QHFEKS----------------------DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp HHHHHS----------------------CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC----------------------CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 554211 1111122 2444455556666677766666554210 01246667777777
Q ss_pred HhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHH
Q 039757 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
...|++++|...|+++....|+. +.....++...|++++|++.+
T Consensus 226 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777777654422 223344556666666666554
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=2e-14 Score=119.06 Aligned_cols=196 Identities=15% Similarity=0.054 Sum_probs=124.4
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHH
Q 039757 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212 (415)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 212 (415)
+...+..+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~a~~~lg~~~~~~g~~~~A~~~ 61 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN----------------------PQDPEALYWLARTQLKLGLVNPALEN 61 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----------------------SSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455666666666666666666666654332 22344555555566666666666666
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHH
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKC-----------GCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVE 280 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~ 280 (415)
++...+. .|.+...+..+..++... |++++|...|++.....| +...+..+..++...|++++|+.
T Consensus 62 ~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 62 GKTLVAR--TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 6666665 465777777788888887 888888888888877655 46677788888888888888888
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHH
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEM 359 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 359 (415)
.|++..+.. .+...+.. +...|...|++++|...|++.....| +...+..+...+...|++++
T Consensus 140 ~~~~al~~~--~~~~~~~~--------------la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 140 SLKQALALE--DTPEIRSA--------------LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHHC--CCHHHHHH--------------HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHhcc--cchHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 888887765 44444333 56667888888888888877665534 55677778888888888888
Q ss_pred HHHHHHHHH
Q 039757 360 GERVTRKVL 368 (415)
Q Consensus 360 a~~~~~~~~ 368 (415)
|.+.+++..
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 888877654
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.9e-13 Score=115.82 Aligned_cols=207 Identities=12% Similarity=-0.054 Sum_probs=176.7
Q ss_pred chhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHH
Q 039757 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGL 144 (415)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 144 (415)
...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5677888889999999999999999998875 45678888899999999999999999998764 3677899999999
Q ss_pred HhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC
Q 039757 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (415)
...|++++|.+.|+++.+... .+.+...+..+...+...|++++|...++.+.+. .|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~ 173 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTL--------------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRN 173 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTT--------------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC
T ss_pred HHHhHHHHHHHHHHHHHhCcc--------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Ccc
Confidence 999999999999999876110 1335567778888889999999999999999987 466
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
+...+..+...|...|++++|...|+++....| +...+..+...+...|++++|...++++.+. .|+...+..
T Consensus 174 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 174 QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 889999999999999999999999999987744 5677888999999999999999999999885 566655443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=1.4e-13 Score=114.20 Aligned_cols=211 Identities=10% Similarity=-0.053 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
++.+|..+...+...|++++|...|+++. ...+. +...+..+...+...|+++.|.+.++.+.+.. +.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 76 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDAL---KSDPK------NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSA 76 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhCcc------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCh
Confidence 44556666666777777777777777666 43333 55566666666666666666666666665543 2344
Q ss_pred hhHHHHHHHHHcC-CChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCC
Q 039757 104 YVNTALVNMYVSL-GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182 (415)
Q Consensus 104 ~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 182 (415)
.++..+...+... |++++|...++.+.+ .++
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------------------------------~~~------------------ 108 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALA------------------------------DPT------------------ 108 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHT------------------------------STT------------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHc------------------------------CcC------------------
Confidence 4455555555555 555555555554432 000
Q ss_pred CccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC--Chh
Q 039757 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK--NLV 260 (415)
Q Consensus 183 ~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 260 (415)
.+.+...+..+...+...|++++|...++.+.+. .|.+...+..+..++...|++++|.+.++++....| +..
T Consensus 109 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 109 ---YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp ---CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred ---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 0112233334444444444445555444444443 344677888888888888999999999888877644 566
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
.+..+...+...|+.++|..+++.+.+. .|+...+..
T Consensus 184 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 184 DLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 6777777888888888888888888764 466655544
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=1.8e-14 Score=121.29 Aligned_cols=203 Identities=11% Similarity=-0.017 Sum_probs=154.5
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
......+..+...+...|+++.|...++.+.+. .|.+...+..+..+|...|++++|.+.|+++....| +...+..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 344556777778888899999999999999886 566889999999999999999999999999888754 67788999
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHH
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVR 344 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 344 (415)
...+...|++++|...++++.+.. |+.... +..+...+...|++++|...++++....| +...+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~-------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 162 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG--MENGDL-------------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEAR 162 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT--CCSHHH-------------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCCHHH-------------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHH
Confidence 999999999999999999998753 433221 22366678999999999999988765533 67788
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
..+...+...|++++|...++++.+..+.+..++..++.+|...|++++|...++++.+...
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 88999999999999999999999999988888999999999999999999999999887654
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=3.6e-13 Score=115.73 Aligned_cols=225 Identities=12% Similarity=-0.045 Sum_probs=155.3
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhh----cCChhH
Q 039757 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ----NGAVRN 208 (415)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~----~~~~~~ 208 (415)
+..++..+...+...|++++|++.|++..+++ +...+..+...+.. .+++++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------------------------~~~a~~~lg~~~~~g~~~~~~~~~ 60 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------------------------ENSGCFNLGVLYYQGQGVEKNLKK 60 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------------------------CHHHHHHHHHHHHcCCCcCCCHHH
Confidence 34456666666666777777777776665433 12334444455555 667777
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc----cCchHHHHH
Q 039757 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAM----HGMGKAAVE 280 (415)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~ 280 (415)
|...|++..+.+ ++..+..+...|.. .+++++|.+.|++..+. .+...+..+...|.. .+++++|..
T Consensus 61 A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~ 135 (273)
T 1ouv_A 61 AASFYAKACDLN----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVE 135 (273)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHH
Confidence 777777776654 66777777778877 88888888888877764 366677777777777 788888888
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh----cCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh---
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR----AGRLEQAEKIALGIPSEITDVVVRRILLGACSF--- 353 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~--- 353 (415)
.|++..+.+ +...+.. +...|.. .+++++|...|++..+. .+...+..+...|..
T Consensus 136 ~~~~a~~~~---~~~a~~~--------------lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 136 YFTKACDLN---DGDGCTI--------------LGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HHHHHHHTT---CHHHHHH--------------HHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhcC---cHHHHHH--------------HHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCC
Confidence 888877754 2222222 4444555 77888888888766554 355667777777777
Q ss_pred -cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh----cCchhhHHHHHHHHhhhcc
Q 039757 354 -HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG----VGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 354 -~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 406 (415)
.+++++|...+++..+.++ ...+..+..+|.. .|++++|.+.+++..+.|.
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7888888888888877654 5677778888887 8888888888888777653
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=7.1e-14 Score=125.24 Aligned_cols=238 Identities=9% Similarity=-0.004 Sum_probs=194.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC-CchHHHHHHHHHHcCCCCch
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY-PNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~ 103 (415)
..+|+.+...+.+.|++++|+..|++++ ...+. +..+|+.+...+...|+ +++|+..|+++++.. +-+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al---~l~P~------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~ 166 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAI---ELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNY 166 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH---HhCcc------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCH
Confidence 4578889999999999999999999999 66666 88899999999999996 999999999999876 4477
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
..|..+..++...|++++|+..|+++.+ .+...|..+..++.+.|++++|+..|+++.+.+
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---------------- 230 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---------------- 230 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----------------
Confidence 8899999999999999999999999875 467789999999999999999999999987533
Q ss_pred CCCccCCCchHHHHhHHHHHhh-cCChhHH-----HHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHh
Q 039757 181 SNGASTEPSEITILAVLPAIWQ-NGAVRNC-----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG--CIFSALKLFEDI 252 (415)
Q Consensus 181 ~~~a~~~~~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~ 252 (415)
+-+...|+.+..++.. .|..++| ...++..++. .|.+...|+.+..++...| ++++|.+.+.++
T Consensus 231 ------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 231 ------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 2234445555555555 3443555 5778888876 6778999999999999988 689999999998
Q ss_pred hhhC-CChhhHHHHHHHHHccC---------chHHHHHHHHHH-HhcCCCCChhhHHH
Q 039757 253 SVER-KNLVSWTSIISGFAMHG---------MGKAAVENFERM-QKVGLKPNRVTFLS 299 (415)
Q Consensus 253 ~~~~-~~~~~~~~li~~~~~~~---------~~~~A~~~~~~m-~~~g~~p~~~~~~~ 299 (415)
+.. .+...+..+..+|.+.| ..++|..+|+++ .+ +.|....|..
T Consensus 303 -~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~ 357 (382)
T 2h6f_A 303 -QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWR 357 (382)
T ss_dssp -TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred -ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence 443 45678889999998874 358999999998 55 4676665543
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=5.4e-14 Score=126.02 Aligned_cols=246 Identities=11% Similarity=-0.017 Sum_probs=190.4
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCC-HHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGE-LEYARSLFEEMPCRNVVSWTGILDGYTRM 178 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 178 (415)
...|..+...+...|++++|+..|+...+ | +...|+.+..++.+.|+ +++|+..|++..+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 45566677778888888888888887764 3 46678888888888886 888888888876432
Q ss_pred cCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-
Q 039757 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK- 257 (415)
Q Consensus 179 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 257 (415)
+-+...|..+..++...|++++|...|+++++. .|.+...|..+..++...|++++|+..|+++....|
T Consensus 163 --------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 163 --------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp --------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred --------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 224456666667777778888888888888887 677999999999999999999999999999998865
Q ss_pred ChhhHHHHHHHHHc-cCchHHH-----HHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcC--CHHHHHH
Q 039757 258 NLVSWTSIISGFAM-HGMGKAA-----VENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG--RLEQAEK 329 (415)
Q Consensus 258 ~~~~~~~li~~~~~-~~~~~~A-----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g--~~~~A~~ 329 (415)
+...|+.+..++.. .|..++| +..|++.... .|+.... |..+...+...| ++++|.+
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a-------------~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESA-------------WNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHH-------------HHHHHHHHTTTCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHH-------------HHHHHHHHHccCccchHHHHH
Confidence 67889999999999 6665777 5888888774 5665442 223455566777 6899999
Q ss_pred HHhcCCCCCc-CHHHHHHHHHHHhhcC--------C-hHHHHHHHHHH-HHcccCCCccHHHHHHHHHhc
Q 039757 330 IALGIPSEIT-DVVVRRILLGACSFHG--------N-VEMGERVTRKV-LEMERGNGGDYVLMYNILAGV 388 (415)
Q Consensus 330 ~~~~~~~~~p-~~~~~~~l~~~~~~~~--------~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 388 (415)
.++++ +..| +...+..+...|.+.| + .++|+++++++ .+.+|.....|..+...+...
T Consensus 298 ~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 298 QLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 98887 3334 5668888998888864 3 58999999999 888888888888888777543
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=2.5e-14 Score=130.65 Aligned_cols=272 Identities=11% Similarity=0.031 Sum_probs=174.0
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch----hhHHHHHHHHHcCCChhHHHHHhcccCC---------Cchhh
Q 039757 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV----YVNTALVNMYVSLGFLKDSSKLFDELPE---------RNLVT 136 (415)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~ 136 (415)
.+..+...+...|+++.|...|+.+.+.+. .+. ..+..+...|...|++++|...|++..+ ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344455566677777777777777766532 122 3455666666667777777766665532 12334
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhh
Q 039757 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216 (415)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 216 (415)
+..+...|...|++++|...|++..+..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------------------------------------- 156 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA---------------------------------------------------- 156 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 5556666666666666666665543100
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHhhhh----C---CChhhHHHHHHHHHcc
Q 039757 217 EKRGFNAFDIRVSNCLIDTYAKCGC-----------------IFSALKLFEDISVE----R---KNLVSWTSIISGFAMH 272 (415)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~~----~---~~~~~~~~li~~~~~~ 272 (415)
.+.+..+....++..+...|...|+ +++|.+.+++.... + ....++..+...|...
T Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 157 RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 0001012244566667777777777 77777777765443 1 1234677777888888
Q ss_pred CchHHHHHHHHHHHhcCCC-CChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-------CHHHH
Q 039757 273 GMGKAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-------DVVVR 344 (415)
Q Consensus 273 ~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~ 344 (415)
|++++|...+++..+.... ++.... .. .+..+...|...|++++|...+++.....| ...++
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~---~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 306 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAE---RR-------ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHH---HH-------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHH---HH-------HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888877653110 111111 11 133477778888888888888876554311 24577
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccC------CCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERG------NGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|.+.+++..+.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88888999999999999999999876544 2347888999999999999999999887653
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=2.5e-14 Score=120.45 Aligned_cols=198 Identities=14% Similarity=0.086 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
.+..+|..+...+...|++++|...|+++. ...+. +...+..+...+...|++++|...++.+.+.. +.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l---~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~ 90 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAI---EENKE------DAIPYINFANLLSSVNELERALAFYDKALELD-SSA 90 (243)
T ss_dssp ---------------------CCTTHHHHH---TTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHH---HhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccc
Confidence 334455555556666666666666666665 33333 45555555666666666666666666655543 234
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
...+..+...+...|++++|.+.|+++.+ .+...+..+...+.+.|++++|.+.++++
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------------- 151 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA------------------- 151 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH-------------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH-------------------
Confidence 44555555555555555555555555432 23444555555555555555555555544
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-C
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-N 258 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~ 258 (415)
.+. .|.+...+..+..++...|++++|.+.|+++....| +
T Consensus 152 -------------------------------------~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 152 -------------------------------------VEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp -------------------------------------HHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred -------------------------------------HHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 433 233555556666666666666666666666555433 3
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 259 LVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 259 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
..++..+..+|...|++++|...++++.+.
T Consensus 193 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 193 ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 455666666666666666666666666553
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=6.9e-14 Score=123.54 Aligned_cols=274 Identities=13% Similarity=0.016 Sum_probs=180.8
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc----hhhHHHHHHHHHcCCChhHHHHHhcccCC---------Cchh
Q 039757 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH----VYVNTALVNMYVSLGFLKDSSKLFDELPE---------RNLV 135 (415)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~ 135 (415)
..+......+...|+++.|...++.+.+... .+ ...+..+...+...|++++|...+++..+ ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455566677888888888888888877642 22 35666777778888888888888776542 1234
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhh
Q 039757 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
++..+...+...|++++|...+++..+...
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------------------------- 114 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISR-------------------------------------------------- 114 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 566777777777777777777776532000
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHhhhh----C---CChhhHHHHHHH
Q 039757 216 GEKRGFNAFDIRVSNCLIDTYAKCGC--------------------IFSALKLFEDISVE----R---KNLVSWTSIISG 268 (415)
Q Consensus 216 ~~~~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~~----~---~~~~~~~~li~~ 268 (415)
+.+..+....++..+...|...|+ +++|.+.+++.... + ....++..+...
T Consensus 115 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 192 (338)
T 3ro2_A 115 --ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT 192 (338)
T ss_dssp --HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 000000013345555556666666 66666666665432 1 123457777778
Q ss_pred HHccCchHHHHHHHHHHHhcCC-CCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---Cc----C
Q 039757 269 FAMHGMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---IT----D 340 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p----~ 340 (415)
+...|++++|...+++..+... .++...... .+..+...|...|++++|...+++.... .+ .
T Consensus 193 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 193 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR----------AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH----------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 8888888888888877764310 111111111 1334677788888888888888765433 11 1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC------CccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGN------GGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
..++..+...+...|++++|...++++.+..+.. ..++..++..|.+.|++++|...+++..+..
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4577888889999999999999999998876442 3478889999999999999999999887643
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=9.8e-13 Score=112.95 Aligned_cols=223 Identities=10% Similarity=-0.094 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh----cCCCchHHHHHHHHHHcCC
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT----LSYPNLGTQLHAVISKVGF 99 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~ 99 (415)
++.++..+...|...|++++|+..|++.. . .. +..++..+...+.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~---~--~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC---D--LK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH---H--TT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH---H--CC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 46678888899999999999999999998 4 23 66788889999999 999999999999998876
Q ss_pred CCchhhHHHHHHHHHc----CCChhHHHHHhcccCC-CchhhHHHHHHHHHh----hCCHHHHHHHHhhCCCCChhHHHH
Q 039757 100 QSHVYVNTALVNMYVS----LGFLKDSSKLFDELPE-RNLVTWNVMITGLVK----WGELEYARSLFEEMPCRNVVSWTG 170 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~ 170 (415)
+...+..+...|.. .+++++|+..|+...+ .+...+..+...|.. .+++++|++.|++..+.+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------ 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN------ 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC------
Confidence 56778888899999 9999999999998765 467789999999999 999999999999876432
Q ss_pred HHHHHHhccCCCCccCCCchHHHHhHHHHHhh----cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh----cCCH
Q 039757 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQ----NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK----CGCI 242 (415)
Q Consensus 171 li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 242 (415)
+...+..+...+.. .+++++|...++...+.+ +...+..+..+|.. .+++
T Consensus 145 ------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 145 ------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp ------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCH
T ss_pred ------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccH
Confidence 23344555555665 889999999999998874 67788889999999 9999
Q ss_pred HHHHHHHHHhhhhCCChhhHHHHHHHHHc----cCchHHHHHHHHHHHhcC
Q 039757 243 FSALKLFEDISVERKNLVSWTSIISGFAM----HGMGKAAVENFERMQKVG 289 (415)
Q Consensus 243 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g 289 (415)
++|.+.|++..+.++ ...+..+...|.. .+++++|...|++..+.|
T Consensus 203 ~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999888644 6778888899998 999999999999988864
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=5.9e-13 Score=122.85 Aligned_cols=335 Identities=10% Similarity=-0.013 Sum_probs=229.2
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC---chHHHHHHHHHHcCCCCchhhHH
Q 039757 31 LLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP---NLGTQLHAVISKVGFQSHVYVNT 107 (415)
Q Consensus 31 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~ 107 (415)
+...+.+.|++++|+++|++.. ..| +...+..|...+...|++ ++|...|+...+. +...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa---~~g--------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~ 73 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLA---ELG--------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHT--------CCTGGGTCC--------------------------------CHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHH---HCC--------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHH
Confidence 5667788999999999999998 444 334555566666777877 8999999988754 445556
Q ss_pred HHHHHHHcCC-----ChhHHHHHhcccCCC-chhhHHHHHHHHHhhCCHHHH---HHHHhhCC-CCChhHHHHHHHHHHh
Q 039757 108 ALVNMYVSLG-----FLKDSSKLFDELPER-NLVTWNVMITGLVKWGELEYA---RSLFEEMP-CRNVVSWTGILDGYTR 177 (415)
Q Consensus 108 ~li~~~~~~g-----~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a---~~~~~~m~-~~~~~~~~~li~~~~~ 177 (415)
.|...+...+ ++++|+..|+...++ +...+..|...|...+..+++ .+.+.... ..+...+..+...|..
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRT 153 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 5666555555 778999999887653 455788888888776654443 33333332 2356677777778877
Q ss_pred ccCCCCcc----------CCCchHHHHhHHHHHhhcC---ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc----C
Q 039757 178 MNRSNGAS----------TEPSEITILAVLPAIWQNG---AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC----G 240 (415)
Q Consensus 178 ~~~~~~a~----------~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 240 (415)
.+.++++. ...+...+..+...+...| +.++|...|+...+.| +.+...+..|..+|... +
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCC
Confidence 77666554 2344457788888888899 9999999999999986 44666667788888665 7
Q ss_pred CHHHHHHHHHHhhhhCCChhhHHHHHHH-H--HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHH
Q 039757 241 CIFSALKLFEDISVERKNLVSWTSIISG-F--AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDM 317 (415)
Q Consensus 241 ~~~~A~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~ 317 (415)
++++|.+.|++.. +.+...+..|... | ...+++++|...|++..+.| +...+.. |...
T Consensus 232 d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~--------------Lg~~ 292 (452)
T 3e4b_A 232 DEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL--------------LGKL 292 (452)
T ss_dssp CHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH--------------HHHH
T ss_pred CHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH--------------HHHH
Confidence 9999999999988 3567777777777 4 56889999999999998876 3333222 4444
Q ss_pred hHhcC-----CHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh----cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh-
Q 039757 318 LGRAG-----RLEQAEKIALGIPSEITDVVVRRILLGACSF----HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG- 387 (415)
Q Consensus 318 ~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 387 (415)
|. .| +.++|.+.|+... . .+...+..|...|.. ..++++|..+|++..+.+ ++.....|..+|..
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa-~-g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV-G-REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQG 367 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT-T-TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSC
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh-C-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhC
Confidence 54 45 9999999999888 3 577778778777766 449999999999998854 56778888888874
Q ss_pred ---cCchhhHHHHHHHHhhhcc
Q 039757 388 ---VGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 388 ---~g~~~~A~~~~~~m~~~~~ 406 (415)
..+..+|..+++...+.|.
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 4588999999998887764
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=7e-14 Score=127.63 Aligned_cols=278 Identities=13% Similarity=0.014 Sum_probs=194.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCc----hhHHHHHHHHHhcCCCchHHHHHHHHHHc--
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDS----FTYSFLIRTCVTLSYPNLGTQLHAVISKV-- 97 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 97 (415)
....+..+...+...|++++|+..|+++. ...+. +. ..+..+...+...|+++.|...++++.+.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al---~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAI---QAGTE------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCS------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHH---Hhccc------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34456667788899999999999999999 44433 33 47888999999999999999999988653
Q ss_pred --CC-CCchhhHHHHHHHHHcCCChhHHHHHhcccCC---------CchhhHHHHHHHHHhhCC----------------
Q 039757 98 --GF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---------RNLVTWNVMITGLVKWGE---------------- 149 (415)
Q Consensus 98 --g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~---------------- 149 (415)
+- +.....+..+...|...|++++|...|++..+ ....++..+...|...|+
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 11 23456788888999999999999999988753 123467788888888888
Q ss_pred -HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHH
Q 039757 150 -LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228 (415)
Q Consensus 150 -~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (415)
+++|.+.+++..+ +.... +..+....+
T Consensus 198 ~~~~A~~~~~~al~-------------------------------------------------~~~~~---~~~~~~~~~ 225 (411)
T 4a1s_A 198 ALTRAVEFYQENLK-------------------------------------------------LMRDL---GDRGAQGRA 225 (411)
T ss_dssp HHHHHHHHHHHHHH-------------------------------------------------HHHHH---TCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------------------------------------HHHHc---CCHHHHHHH
Confidence 6666666655421 11111 001224456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC-CChhhHHHH
Q 039757 229 SNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSV 300 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l 300 (415)
+..+...|...|++++|.+.|++..... ++ ..++..+...|...|++++|...+++....... .+......
T Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~- 304 (411)
T 4a1s_A 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ- 304 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH-
Confidence 6777778888888888888888776541 12 236777888888888888888888877653111 11111111
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---Cc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---IT----DVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.+..+...|...|++++|...+++.... .+ ...++..+...|...|++++|...+++..+...
T Consensus 305 ---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 305 ---------SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1334677788888888888888766543 11 234777888889999999999999999887653
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=2.3e-13 Score=109.42 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
+..+|..+...|...|++++|.+.|++..+..| +..++..+..+|...|++++|...+.+.... .|+......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~---- 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYY---- 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHH----
Confidence 678888999999999999999999999888755 5678888999999999999999999888775 344433222
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHH
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 382 (415)
.+...+...++++.|...++......| +...+..+...+...|++++|++.|+++.+..|.++.++..++
T Consensus 78 ---------~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 78 ---------ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp ---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ---------HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 245557888999999988877655434 5668888899999999999999999999999999999999999
Q ss_pred HHHHhcCchhhHHHHHHHHhhhcc
Q 039757 383 NILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+|.+.|++++|.+.+++..+.+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCc
Confidence 999999999999999998877553
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=6.7e-14 Score=127.31 Aligned_cols=201 Identities=13% Similarity=-0.002 Sum_probs=142.3
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcC----CCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRG----FNAFDIRVSNCLIDTYAKCGC--------------------IFSALKLF 249 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~ 249 (415)
..+...+...|++++|...+.+..+.. ..+....++..+...|...|+ +++|.+.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 333444444444444444444443321 011124577888888888998 99999988
Q ss_pred HHhhhh---CC----ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCC-CCChhhHHHHHHHHccCCcchHHHHHHhHhc
Q 039757 250 EDISVE---RK----NLVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHGGLHYGCLVDMLGRA 321 (415)
Q Consensus 250 ~~~~~~---~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~ 321 (415)
++.... .+ ...++..+...|...|++++|...+++..+... .++...... .+..+...|...
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----------~~~~la~~~~~~ 240 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR----------AYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH----------HHHHHHHHHHHT
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH----------HHHHHHHHHHHc
Confidence 876554 11 234688899999999999999999999875311 122221111 144478889999
Q ss_pred CCHHHHHHHHhcCCCC---CcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC------CccHHHHHHHHHhc
Q 039757 322 GRLEQAEKIALGIPSE---ITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGN------GGDYVLMYNILAGV 388 (415)
Q Consensus 322 g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 388 (415)
|++++|...+++.... .++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999998876543 111 4578888999999999999999999998876442 45788999999999
Q ss_pred CchhhHHHHHHHHhhh
Q 039757 389 GRYVDAERLRRVMDER 404 (415)
Q Consensus 389 g~~~~A~~~~~~m~~~ 404 (415)
|++++|.+.+++..+.
T Consensus 321 g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLEI 336 (406)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987654
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=8.6e-14 Score=129.24 Aligned_cols=198 Identities=10% Similarity=-0.076 Sum_probs=172.3
Q ss_pred CchHHHHhHHHHHhhcCCh-hHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHH
Q 039757 188 PSEITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li 266 (415)
.+...+..+...+...|++ ++|...|++..+. .|.+...+..+..+|...|++++|.+.|++.....|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 4566778888888999999 9999999999988 577899999999999999999999999999999888888899999
Q ss_pred HHHHcc---------CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhc--------CCHHHHHH
Q 039757 267 SGFAMH---------GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRA--------GRLEQAEK 329 (415)
Q Consensus 267 ~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~--------g~~~~A~~ 329 (415)
..|... |++++|...|++..+. .|+.... |..+...|... |++++|.+
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-------------~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRS-------------WYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHH-------------HHHHHHHHHHHHHhhccccchHHHHHH
Confidence 999999 9999999999999885 4554332 22355667777 88999999
Q ss_pred HHhcCCCCCc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 330 IALGIPSEIT----DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 330 ~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
.|++.....| +...|..+..+|...|++++|.+.|+++.+..|.+..++..+..++...|++++|.+.+.++.
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9998776545 677999999999999999999999999999999999999999999999999999997665543
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=3.1e-13 Score=119.31 Aligned_cols=277 Identities=16% Similarity=0.048 Sum_probs=192.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC----chhHHHHHHHHHhcCCCchHHHHHHHHHHc---
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD----SFTYSFLIRTCVTLSYPNLGTQLHAVISKV--- 97 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 97 (415)
...+......+...|++++|+..|+++. ...+. + ...+..+...+...|+++.|.+.++...+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al---~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAV---QVGTE------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH---hhCcc------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 3455666778899999999999999998 44333 3 367888999999999999999999987543
Q ss_pred -CCCC-chhhHHHHHHHHHcCCChhHHHHHhcccCC-----Cc----hhhHHHHHHHHHhhCC-----------------
Q 039757 98 -GFQS-HVYVNTALVNMYVSLGFLKDSSKLFDELPE-----RN----LVTWNVMITGLVKWGE----------------- 149 (415)
Q Consensus 98 -g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~----------------- 149 (415)
+-.| ...++..+...+...|++++|...+++..+ ++ ..++..+...+...|+
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 76 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 2222 356778888999999999999999988653 22 3367777777877777
Q ss_pred ---HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH
Q 039757 150 ---LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226 (415)
Q Consensus 150 ---~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 226 (415)
+++|.+.+++... +.... +..+...
T Consensus 156 ~~~~~~A~~~~~~a~~-------------------------------------------------~~~~~---~~~~~~~ 183 (338)
T 3ro2_A 156 RNALQAAVDLYEENLS-------------------------------------------------LVTAL---GDRAAQG 183 (338)
T ss_dssp HHHHHHHHHHHHHHHH-------------------------------------------------HHHHH---TCHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------------------------------------------HHHhc---CCHHHHH
Confidence 5666655554421 11110 1012234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCC-CCChhhHH
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTFL 298 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~ 298 (415)
.++..+...+...|++++|.+.+++..... ++ ..++..+...+...|++++|...+++...... .++.....
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 567777888888888888888888776541 22 23677788888888888888888888764311 11111111
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---Cc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---IT----DVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
. .+..+...|...|++++|...+++.... .+ ...++..+...+...|++++|...++++.+..
T Consensus 264 ~----------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 264 Q----------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp H----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred H----------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 1334777788889999998888766443 11 24477788889999999999999999998765
Q ss_pred c
Q 039757 372 R 372 (415)
Q Consensus 372 ~ 372 (415)
+
T Consensus 334 ~ 334 (338)
T 3ro2_A 334 R 334 (338)
T ss_dssp -
T ss_pred H
Confidence 4
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=3.3e-12 Score=111.73 Aligned_cols=236 Identities=8% Similarity=-0.014 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHhhcC----CCh----HHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHH-------hcCCC----
Q 039757 24 HTLLFNTLLHFYSLA----DSP----KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV-------TLSYP---- 84 (415)
Q Consensus 24 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~-------~~~~~---- 84 (415)
+...|...+..-.+. ++. ++|..+|+++. ...+. +...|..++..+. +.|++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al---~~~p~------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~ 77 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL---LVLGH------HPDIWYEAAQYLEQSSKLLAEKGDMNNAK 77 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHH---HHHTT------CHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHH---HHcCC------CHHHHHHHHHHHHHhchhhhhccchhhcc
Confidence 344566666665443 343 78999999998 55555 7788988888776 35887
Q ss_pred ---chHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hh-hHHHHHHHHHhhCCHHHHHHHH
Q 039757 85 ---NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LV-TWNVMITGLVKWGELEYARSLF 157 (415)
Q Consensus 85 ---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~-~~~~li~~~~~~g~~~~a~~~~ 157 (415)
++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|
T Consensus 78 ~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999998731234566899999999999999999999999875 43 44 8999999999999999999999
Q ss_pred hhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHH-hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHH
Q 039757 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI-WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236 (415)
Q Consensus 158 ~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (415)
++..+.+. .+...+....... ...|+.+.|..+|+...+. .|.+...+..++..+
T Consensus 158 ~~a~~~~p----------------------~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~ 213 (308)
T 2ond_A 158 KKAREDAR----------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYL 213 (308)
T ss_dssp HHHHTSTT----------------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHhcCC----------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 99875331 1222333222222 2369999999999999987 577899999999999
Q ss_pred HhcCCHHHHHHHHHHhhhh---CC--ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 237 AKCGCIFSALKLFEDISVE---RK--NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
.+.|++++|..+|++.... +| ....|..++..+...|+.+.|..+++++.+. .|+.
T Consensus 214 ~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~--~p~~ 274 (308)
T 2ond_A 214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA--FREE 274 (308)
T ss_dssp HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--TTTT
T ss_pred HHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccc
Confidence 9999999999999999884 33 3567899999999999999999999999875 4543
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=3.4e-12 Score=115.37 Aligned_cols=308 Identities=10% Similarity=-0.085 Sum_probs=207.3
Q ss_pred hhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH--HHhcCCCchHH-----------HHHHHHHHcCCCC
Q 039757 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT--CVTLSYPNLGT-----------QLHAVISKVGFQS 101 (415)
Q Consensus 35 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~g~~~ 101 (415)
+.+.+++++|..+++++.+.. ....+.+ +...|-.++.. ..-.++.+.+. +.++.+.....+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~-~~~~~~~---~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~ 97 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQEL-DQMEEDQ---DLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARL 97 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HTSCCCH---HHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHH-Hhhccch---HHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCc
Confidence 456999999999999997532 2222002 33344444332 22223344444 7777775532111
Q ss_pred ch----hhHHHHHHHHHcCCChhHHHHHhcccCC-----C----chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHH
Q 039757 102 HV----YVNTALVNMYVSLGFLKDSSKLFDELPE-----R----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168 (415)
Q Consensus 102 ~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 168 (415)
+. ..+......+...|++++|...|++..+ + ...+|..+...|...|++++|...+++..+-
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~----- 172 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI----- 172 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----
Confidence 11 1122255667889999999999988754 2 2457899999999999999999999887521
Q ss_pred HHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCC----CCCCHHHHHHHHHHHHhcCCHHH
Q 039757 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF----NAFDIRVSNCLIDTYAKCGCIFS 244 (415)
Q Consensus 169 ~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~ 244 (415)
+.+.++. ......++..+...+...|++++|...+.+..+... .+....++..+..+|...|++++
T Consensus 173 ------~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 173 ------YKEHEAY----NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp ------HHTCSTT----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------HHhCccc----hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 0000000 011234677788888999999999999988876421 12123578899999999999999
Q ss_pred HHHHHHHhhhh-----C-C-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC-CChhhHHHHHHHHccCCcchHHHHH
Q 039757 245 ALKLFEDISVE-----R-K-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGLHYGCLVD 316 (415)
Q Consensus 245 A~~~~~~~~~~-----~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~li~ 316 (415)
|.+.|++.... . | ...++..+...|...|++++|...+++....... .+...... +..+..
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----------~~~l~~ 311 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-----------FEFLKS 311 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHH
Confidence 99999998773 2 3 3456889999999999999999999998753111 12211111 222666
Q ss_pred HhHhcCC---HHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 317 MLGRAGR---LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 317 ~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.|...|+ +++|+.++++..........+..+...|...|++++|...+++..+...
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6888888 8888888888754422344677788888888999999988888877553
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=5.2e-13 Score=116.70 Aligned_cols=249 Identities=10% Similarity=-0.033 Sum_probs=148.8
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHc-------CCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--------
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKV-------GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-------- 131 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------- 131 (415)
+..++..+...+...|+++.|..+++.+.+. ..+.....+..+...|...|++++|...+++..+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4467788888899999999999999988763 2233456677777888888888888877776542
Q ss_pred ---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhH
Q 039757 132 ---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208 (415)
Q Consensus 132 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~ 208 (415)
....++..+...|...|++++|.+.|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------------------------------------------- 140 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI--------------------------------------------- 140 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH---------------------------------------------
Confidence 11334555566666666666666666554210
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------CC-ChhhHHHHHHHHHccCchHHHH
Q 039757 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------RK-NLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~~~~~~A~ 279 (415)
...... +..|....++..+...|...|++++|.+.|+++... .| ...++..+...|...|++++|.
T Consensus 141 ----~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 141 ----REKVLG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp ----HHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ----HHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 000000 112335667888889999999999999999988765 22 2346888889999999999999
Q ss_pred HHHHHHHhc-------CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHH
Q 039757 280 ENFERMQKV-------GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGAC 351 (415)
Q Consensus 280 ~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 351 (415)
..++++.+. ...+........... +..+...+...+.+.+|...++......| ...++..+...|
T Consensus 216 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~ 288 (311)
T 3nf1_A 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEE-------REECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALY 288 (311)
T ss_dssp HHHHHHHHHHHHHHHC------CCHHHHHHH-------HHHC-------CCSCCCC---------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-------HHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Confidence 999998763 122333222222222 11133334445555555555555554423 344666677777
Q ss_pred hhcCChHHHHHHHHHHHHccc
Q 039757 352 SFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~ 372 (415)
...|++++|.++++++.+..+
T Consensus 289 ~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 289 RRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHTCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHhh
Confidence 777777777777777666543
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=1.6e-11 Score=110.76 Aligned_cols=321 Identities=9% Similarity=-0.055 Sum_probs=217.1
Q ss_pred CcchHHHHHHHHHHh--hcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH--HHhcCCCchHH--------
Q 039757 21 LLHHTLLFNTLLHFY--SLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT--CVTLSYPNLGT-------- 88 (415)
Q Consensus 21 ~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~~~~~~a~-------- 88 (415)
+.|+..+=+.|-..| .+.+++++|..+++++.+. ......-+ +...|-.++.. ..-.+..+.+.
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~-~~~~~~~~---~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~ 81 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQD-IQQMEEDQ---DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTV 81 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-GGGBCCCH---HHHHHHHHHHHHHHHHHHTCCC--------CH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHhcccH---HHHHHHHHHHHHHHHHHhhcCcccccccccch
Confidence 567888888888888 8899999999999998742 12222002 33344444432 22223444444
Q ss_pred -HHHHHHHHcCCCCch----hhHHHHHHHHHcCCChhHHHHHhcccCC-----Cc----hhhHHHHHHHHHhhCCHHHHH
Q 039757 89 -QLHAVISKVGFQSHV----YVNTALVNMYVSLGFLKDSSKLFDELPE-----RN----LVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 89 -~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~ 154 (415)
+.++.+.....+.+. ..+......+...|++++|+..|++..+ ++ ..++..+...|...|++++|.
T Consensus 82 ~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 82 TELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 777776543211111 1222344556789999999999988753 22 457888999999999999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhc----CCCCCCHHHHH
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR----GFNAFDIRVSN 230 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 230 (415)
..+++..+-. .+.+.. ......++..+...+...|++++|...+.+..+. +..+....++.
T Consensus 162 ~~~~~al~~~-----------~~~~~~----~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 226 (378)
T 3q15_A 162 YHILQALDIY-----------QNHPLY----SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226 (378)
T ss_dssp HHHHHHHHHH-----------HTSTTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HhCCCc----hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998875210 000000 0012346677888889999999999999888763 11122346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-----hCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 231 CLIDTYAKCGCIFSALKLFEDISV-----ERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~~-----~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
.+..+|...|++++|.+.|++... ..| ...++..+...|.+.|++++|...+++..+..-..+...+...+
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--- 303 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF--- 303 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 899999999999999999999877 333 35678889999999999999999999988753332222332222
Q ss_pred ccCCcchHHHHHHhHhcCC---HHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 039757 305 SHGGLHYGCLVDMLGRAGR---LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 370 (415)
..+...|...++ +++|+..++...........+..+...|...|++++|...++++.+.
T Consensus 304 -------~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 304 -------LFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp -------HHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 225556777788 88888888875443122346667888888889999998888887664
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=5.5e-14 Score=122.97 Aligned_cols=249 Identities=12% Similarity=0.011 Sum_probs=170.3
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHH
Q 039757 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212 (415)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 212 (415)
+..++..+...+...|++++|..+|+++.+.- .+.+.. ........+..+...+...|++++|...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~ 91 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDL-----------EKTSGH---DHPDVATMLNILALVYRDQNKYKDAANL 91 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHHHCS---SSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------HHHcCC---CCHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34578888889999999999999998875310 000000 0122345677788888899999999999
Q ss_pred Hhhhhhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--------C-ChhhHHHHHHHHHccCchHH
Q 039757 213 HGYGEKR------GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER--------K-NLVSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 213 ~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~-~~~~~~~li~~~~~~~~~~~ 277 (415)
++...+. +..+....++..+...|...|++++|.+.|+++.... | ....+..+...+...|++++
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 9988875 3335467888999999999999999999999987651 2 34568889999999999999
Q ss_pred HHHHHHHHHhc---CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---------Cc------
Q 039757 278 AVENFERMQKV---GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---------IT------ 339 (415)
Q Consensus 278 A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~p------ 339 (415)
|...++++... ...++...... .+..+...|...|++++|.+.++++... .+
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAK----------TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHH----------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 99999998764 11111111111 1344778899999999999999876542 01
Q ss_pred -CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 340 -DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 340 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
....+..+...+...+.+.++...++......+....++..++.+|.+.|++++|.+++++..+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 112233333445556677778888888887777778899999999999999999999999887643
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=6.1e-13 Score=120.26 Aligned_cols=294 Identities=9% Similarity=-0.041 Sum_probs=203.8
Q ss_pred HHhcCCCchHHHHHHHHHHc--CC--CCchhhHHHHHHH--HHcCCChhHHH-----------HHhcccCC-C-chh---
Q 039757 78 CVTLSYPNLGTQLHAVISKV--GF--QSHVYVNTALVNM--YVSLGFLKDSS-----------KLFDELPE-R-NLV--- 135 (415)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~--~~~~g~~~~a~-----------~~~~~~~~-~-~~~--- 135 (415)
+.+.++++.|..+++.+.+. .+ .++...|-.++.. ..-.++++.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 56789999999999998653 22 2333333444332 11223344444 55555432 1 111
Q ss_pred ---hHHHHHHHHHhhCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChh
Q 039757 136 ---TWNVMITGLVKWGELEYARSLFEEMPC-----RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207 (415)
Q Consensus 136 ---~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~ 207 (415)
.+......+...|++++|...|++..+ ++. .....++..+...+...|+++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------~~~a~~~~~lg~~~~~~~~~~ 160 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDR---------------------IEKAEFFFKMSESYYYMKQTY 160 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH---------------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH---------------------HHHHHHHHHHHHHHHHcCCHH
Confidence 222356667889999999999998754 120 113356777888888999999
Q ss_pred HHHHHHhhhhhcCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHHHHHHHccCch
Q 039757 208 NCQLIHGYGEKRGF-----NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGMG 275 (415)
Q Consensus 208 ~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~ 275 (415)
.|...+.+..+... .+....+++.+..+|...|++++|.+.|++..... ++ ..++..+..+|...|++
T Consensus 161 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 161 FSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 99998888876421 12235678899999999999999999999987651 22 24688899999999999
Q ss_pred HHHHHHHHHHHhc----CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----CcC-HHHHH
Q 039757 276 KAAVENFERMQKV----GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-----ITD-VVVRR 345 (415)
Q Consensus 276 ~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~-~~~~~ 345 (415)
++|...+++..+. +..|+... .+..+...|.+.|++++|...+++.... .|. ...+.
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 307 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQ-------------AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFE 307 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHH-------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998763 22133211 1344788899999999999999876543 122 22356
Q ss_pred HHHHHHhhcCC---hHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 346 ILLGACSFHGN---VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 346 ~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+...+...|+ .++|+.++++. ...+.....+..++..|...|++++|...+++..+..-
T Consensus 308 ~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 308 FLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 67778888888 77777777766 22222456788999999999999999999999876543
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=6.8e-11 Score=106.31 Aligned_cols=171 Identities=15% Similarity=-0.002 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC------ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh-hhH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK------NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR-VTF 297 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~ 297 (415)
....+..+...+...|++++|...+++.....+ ...++..+...+...|++++|...+++.....-.++. ..+
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 345667788888999999999999998766522 1245778888899999999999999998764222222 111
Q ss_pred HHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-----HHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-----VVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
..... ...+..+...|++++|...+++.....|. ...+..+...+...|++++|...++++.....
T Consensus 214 ~~~~~---------~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 214 ISNAN---------KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHHHH---------HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH---------HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11100 01344577899999999999887765221 22566778889999999999999999877653
Q ss_pred CC------CccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 373 GN------GGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 373 ~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.. ...+..+..++...|++++|...+++....
T Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 31 236677888999999999999999887654
No 71
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=9.6e-12 Score=114.72 Aligned_cols=358 Identities=10% Similarity=-0.019 Sum_probs=216.4
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCCh---HHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHH
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSP---KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV 79 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 79 (415)
++...|.++|....+.| ++.++..+...|...|+. ++|+..|++.. .. ++..+..|...+.
T Consensus 17 g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~---~~---------~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAA---DT---------SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------------------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH---hC---------CHHHHHHHHHHHH
Confidence 45677778888777665 234445555666666776 77888887776 22 2234455555444
Q ss_pred hcC-----CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHH---HHHhcccCC-CchhhHHHHHHHHHhhC--
Q 039757 80 TLS-----YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS---SKLFDELPE-RNLVTWNVMITGLVKWG-- 148 (415)
Q Consensus 80 ~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~~~~-~~~~~~~~li~~~~~~g-- 148 (415)
..+ ++++|...|+...+.|. ++ .+..|...|...+..+++ .+.+....+ .+...+..+...|...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 444 55678888887777653 22 455566666655543333 333332222 34556666666666666
Q ss_pred --CHHHHHHHHhhCCCCChhHHHHHHHHHHhcc---CCCCcc---------CCCchHHHHhHHHHHhhc----CChhHHH
Q 039757 149 --ELEYARSLFEEMPCRNVVSWTGILDGYTRMN---RSNGAS---------TEPSEITILAVLPAIWQN----GAVRNCQ 210 (415)
Q Consensus 149 --~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~---~~~~a~---------~~~~~~~~~~ll~~~~~~----~~~~~a~ 210 (415)
+.+++..+++.....++..+..|...|.+.| +.++|. ..++...+..+...|... +++++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 3444555555555555566777777777666 555554 334444445566666544 7999999
Q ss_pred HHHhhhhhcCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccC-----chHHHHHHH
Q 039757 211 LIHGYGEKRGFNAFDIRVSNCLIDT-Y--AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG-----MGKAAVENF 282 (415)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~A~~~~ 282 (415)
..|+... . .++..+..|... | ...+++++|.+.|++..+. .+...+..|...|. .| ++++|...|
T Consensus 238 ~~~~~aa-~----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 238 ALLEKIA-P----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-DQPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHG-G----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHc-C----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 9999988 3 377788888887 4 5688999999999998874 36777888888887 55 999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh----cCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh----c
Q 039757 283 ERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR----AGRLEQAEKIALGIPSEITDVVVRRILLGACSF----H 354 (415)
Q Consensus 283 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 354 (415)
++.. .| +...... |...|.. ..+.++|...|+...+. .+......|...|.. .
T Consensus 311 ~~Aa-~g---~~~A~~~--------------Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 311 EKAV-GR---EVAADYY--------------LGQIYRRGYLGKVYPQKALDHLLTAARN-GQNSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp HTTT-TT---CHHHHHH--------------HHHHHHTTTTSSCCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHSCTTBC
T ss_pred HHHh-CC---CHHHHHH--------------HHHHHHCCCCCCcCHHHHHHHHHHHHhh-ChHHHHHHHHHHHHhCCCCC
Confidence 9877 32 2222222 4444544 45999999999887665 345566666666653 5
Q ss_pred CChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
++.++|..+++...+.+.+........+......++..+|..+.++..+..
T Consensus 372 ~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 689999999999999886644433334444445567888888888776643
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=1.2e-12 Score=126.61 Aligned_cols=168 Identities=13% Similarity=0.077 Sum_probs=141.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
.|.+...++.|..+|.+.|++++|++.|++..+..| +..+|+.+..+|.+.|++++|+..|++..+. .|+...
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~---- 78 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFAD---- 78 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH----
Confidence 566788899999999999999999999999888765 5678889999999999999999999998874 566433
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHH
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 379 (415)
.|..+...|.+.|++++|++.|++..+..| +...|..+..+|...|++++|++.|+++++..|.+...+.
T Consensus 79 ---------a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~ 149 (723)
T 4gyw_A 79 ---------AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149 (723)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHh
Confidence 133477778899999999999987765545 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 380 LMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.++.+|...|++++|.+.+++..+.
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999999999988887653
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1.7e-11 Score=107.25 Aligned_cols=222 Identities=8% Similarity=-0.052 Sum_probs=167.9
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCCh-------hHHHHHHhhhhhcC
Q 039757 151 EYARSLFEEMPC---RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV-------RNCQLIHGYGEKRG 220 (415)
Q Consensus 151 ~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~ 220 (415)
++|..+|++... .+...|..++..+...++ .+.+.|++ ++|..+|++.++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~------------------~l~~~g~~~~~~~~~~~A~~~~~rAl~~- 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK------------------LLAEKGDMNNAKLFSDEAANIYERAIST- 93 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHHHTSCCHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch------------------hhhhccchhhcccchHHHHHHHHHHHHH-
Confidence 677788877763 233444444443332211 02245665 8999999999983
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hh-hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh-hH
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LV-SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV-TF 297 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~ 297 (415)
+.|.+...|..++..+...|++++|.++|+++....|+ .. .|..++..+.+.|++++|..+|++..+.. |+.. .|
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~ 171 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVY 171 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHH
Confidence 14667889999999999999999999999999987664 44 79999999999999999999999998853 4332 22
Q ss_pred HHHHHHHccCCcchHHHHHH-hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc---c
Q 039757 298 LSVLNACSHGGLHYGCLVDM-LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEME---R 372 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~ 372 (415)
.. .... +...|+.++|.++|+......| +...|..++..+.+.|++++|..+|+++.+.. |
T Consensus 172 ~~--------------~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 172 VT--------------AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HH--------------HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HH--------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 11 1111 2236999999999988766534 56789999999999999999999999999963 3
Q ss_pred C-CCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 373 G-NGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 373 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
. ....|..++..+.+.|+.++|..+++++.+....
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 2 4568888999999999999999999998876654
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=1e-12 Score=122.06 Aligned_cols=211 Identities=9% Similarity=-0.087 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC-chHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCCh
Q 039757 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP-NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119 (415)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 119 (415)
+++++..++... ..... +...+..+...+...|++ ++|.+.|+++.+.. +.+...|..+..+|...|++
T Consensus 84 ~~~al~~l~~~~---~~~~~------~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 84 MEKTLQQMEEVL---GSAQV------EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHH---TTCCC------CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHh---ccCch------hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH
Confidence 455566666554 43333 778899999999999999 99999999998875 44678899999999999999
Q ss_pred hHHHHHhcccCC--CchhhHHHHHHHHHhh---------CCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC
Q 039757 120 KDSSKLFDELPE--RNLVTWNVMITGLVKW---------GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188 (415)
Q Consensus 120 ~~a~~~~~~~~~--~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~ 188 (415)
++|...|+...+ |+...+..+...+... |++++|++.|++..+.+ +.
T Consensus 154 ~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------p~ 211 (474)
T 4abn_A 154 TSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD----------------------VL 211 (474)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC----------------------TT
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC----------------------CC
Confidence 999999998865 7778899999999999 99999999999986422 22
Q ss_pred chHHHHhHHHHHhhc--------CChhHHHHHHhhhhhcCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 039757 189 SEITILAVLPAIWQN--------GAVRNCQLIHGYGEKRGFNA---FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 257 (415)
+...+..+..++... |++++|...|+...+. .| .+...+..+..+|...|++++|.+.|++.....|
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555666666666 8899999999999987 46 6899999999999999999999999999988755
Q ss_pred -ChhhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 258 -NLVSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 258 -~~~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
+...+..+..++...|++++|...+.++
T Consensus 290 ~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 290 AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5667889999999999999998766554
No 75
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.43 E-value=6.7e-11 Score=100.87 Aligned_cols=240 Identities=8% Similarity=-0.086 Sum_probs=167.6
Q ss_pred hCCHHHHHHHHhhCCCCChh-HHHHHHHHHHhccCCCCcc-CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC
Q 039757 147 WGELEYARSLFEEMPCRNVV-SWTGILDGYTRMNRSNGAS-TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~-~~~~li~~~~~~~~~~~a~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (415)
.|.+..++.-...+...+.. .--.+.++|.-.|++.... ..|....+..+.. +...+ +...+++....+ ++
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~--~~ 98 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK--QN 98 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS--CC
T ss_pred hhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC--CC
Confidence 45555555544444322222 2222345666666655443 2233223333333 33322 677888877764 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC-----Chhh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP-----NRVT 296 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~~ 296 (415)
+..++..+..++...|++++|++++.+....+| +...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 566667889999999999999999999866543 4566888899999999999999999999885 66 3566
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHc------
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM------ 370 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 370 (415)
...+..+ .+......++..+|..+|+++....|+..+-..++.++...|++++|.+.++.+.+.
T Consensus 177 l~~Laea----------~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~ 246 (310)
T 3mv2_B 177 ILNLAES----------YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQ 246 (310)
T ss_dssp HHHHHHH----------HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTT
T ss_pred HHHHHHH----------HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 5555555 333344445999999999999888776444445555899999999999999988776
Q ss_pred ----ccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 371 ----ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 371 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
++.++.++..++......|+ +|.++++++.+....
T Consensus 247 k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 247 KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 36688888788877777887 899999999876643
No 76
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=9.6e-12 Score=99.82 Aligned_cols=169 Identities=14% Similarity=0.023 Sum_probs=145.6
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
+...|..+...+...|++++|...|++..+. .|.+..++..+..+|.+.|++++|...+.......| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4567888999999999999999999999988 687999999999999999999999999999988755 5677888889
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
.+...++++.|...+.+.... .|+.... +..+...|.+.|++++|++.|++.....| +..+|..
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~-------------~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADA-------------YYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHH-------------HHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 999999999999999998875 4554332 22366779999999999999988766544 6678999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
+..+|.+.|++++|++.|+++++.+|.+
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 9999999999999999999999987753
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=4e-12 Score=101.85 Aligned_cols=167 Identities=15% Similarity=0.031 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
...+..+...+...|++++|.+.|+++....| +...+..+...+...|++++|...++++.+. .|+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~------- 78 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKV------- 78 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHH-------
Confidence 44566667777777778888777777766533 5566777777777778888888877777664 3332211
Q ss_pred ccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCC-cCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI-TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
+..+...+...|++++|.+.++++.... .+...+..+...+...|++++|.+.++++.+..+.+...+..++.
T Consensus 79 ------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 152 (186)
T 3as5_A 79 ------ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152 (186)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 2225556777788888888777655442 355677777888888888888888888888888777788888888
Q ss_pred HHHhcCchhhHHHHHHHHhhhccc
Q 039757 384 ILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
.+...|++++|...+++..+....
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 153 SYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC
Confidence 888888888888888887766543
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=6.7e-10 Score=106.26 Aligned_cols=144 Identities=11% Similarity=0.125 Sum_probs=98.7
Q ss_pred hHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC---
Q 039757 7 VTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY--- 83 (415)
Q Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~--- 83 (415)
...++...+.++. -|..+|..++..+.+.++++.+..+|+++. ..-+. +...|..-+..-.+.++
T Consensus 51 ~i~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL---~~fP~------~~~lW~~Yi~~E~~~~~~~~ 118 (679)
T 4e6h_A 51 VIGKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLH---DRFPL------MANIWCMRLSLEFDKMEELD 118 (679)
T ss_dssp HHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHTC--CCC
T ss_pred HHHHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHH---HHCCC------CHHHHHHHHHHHHhhCCcch
Confidence 3444555555544 588899999999999999999999999998 44333 66778888888888888
Q ss_pred CchHHHHHHHHHHcC-CCCchhhHHHHHHHHHcCCCh--------hHHHHHhcccC------CC-chhhHHHHHHHHH--
Q 039757 84 PNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFL--------KDSSKLFDELP------ER-NLVTWNVMITGLV-- 145 (415)
Q Consensus 84 ~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~li~~~~-- 145 (415)
++.+.++|+..+... .+|++..|...+....+.++. +.+.++|+... ++ +...|...+....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 889999999987754 137888888887766665543 23346666532 22 3457777776543
Q ss_pred -------hhCCHHHHHHHHhhCCC
Q 039757 146 -------KWGELEYARSLFEEMPC 162 (415)
Q Consensus 146 -------~~g~~~~a~~~~~~m~~ 162 (415)
..++++.+..+|++...
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCcHHHHhHHHHHHHHHHHHHh
Confidence 24456778888887763
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=8.9e-11 Score=97.71 Aligned_cols=199 Identities=11% Similarity=-0.097 Sum_probs=146.1
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
.+...+......+...|++++|...|+...+.. | ++...+..+..++...|++++|.+.|++.....| +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 355778888888999999999999999999974 3 5788888899999999999999999999988766 45679999
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCChhhHH-HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC---H
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL-SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD---V 341 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~ 341 (415)
..+|...|++++|...+++..+. .|+...+. .+..+ |..+...+...|++++|++.|++.....|+ .
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 153 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIY-------YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT 153 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH-------HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH
Confidence 99999999999999999999885 56654332 22222 445778889999999999999998877565 4
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..|..+..++...|+. .++++......+...|... .....|.+++|...+++..+.
T Consensus 154 ~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 154 DALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 5777777777665544 3344444333332222222 223345556666666555544
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=3.7e-11 Score=108.31 Aligned_cols=308 Identities=12% Similarity=-0.021 Sum_probs=202.2
Q ss_pred CchhHHHHHHHH--HhcCCCchHHHHHHHHHHc--CC--CCchhhHHHHHHH--HHcCCChhHHH---------HHhccc
Q 039757 67 DSFTYSFLIRTC--VTLSYPNLGTQLHAVISKV--GF--QSHVYVNTALVNM--YVSLGFLKDSS---------KLFDEL 129 (415)
Q Consensus 67 ~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~--~~~~g~~~~a~---------~~~~~~ 129 (415)
+..+-+.|-..+ .+.++++.|.++++.+.+. .+ .++...|-.++.. ..-.+.+..+. ..++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 444445555555 7889999999999988653 22 2334444444432 11112222222 444444
Q ss_pred CC---C-c-hh---hHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHh
Q 039757 130 PE---R-N-LV---TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201 (415)
Q Consensus 130 ~~---~-~-~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~ 201 (415)
.. + + .. .|......+...|++++|+..|++..+.-... ++ ......++..+...+.
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~-----~~~~a~~~~~lg~~y~ 152 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-----------SD-----DIEKAEFHFKVAEAYY 152 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-----------CC-----HHHHHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-----------CC-----hHHHHHHHHHHHHHHH
Confidence 32 2 1 11 23344556678999999999999875311000 00 1112346677888888
Q ss_pred hcCChhHHHHHHhhhhhcCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCC----hhhHHHHHHHH
Q 039757 202 QNGAVRNCQLIHGYGEKRGF-----NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKN----LVSWTSIISGF 269 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~ 269 (415)
..|+++.|...+.+..+... .+....+++.+..+|...|++++|.+.|++.... .++ ..+++.+..+|
T Consensus 153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999998888775321 1123567889999999999999999999988764 122 34688899999
Q ss_pred HccCchHHHHHHHHHHHhcC---CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----CcC-
Q 039757 270 AMHGMGKAAVENFERMQKVG---LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-----ITD- 340 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~- 340 (415)
...|++++|...+++..... ..|.. .. .+..+...|.+.|++++|...+++.... .|.
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDLL--PK-----------VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGGH--HH-----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChhH--HH-----------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999987621 12222 11 1334788899999999999998764332 122
Q ss_pred HHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 341 VVVRRILLGACSFHGN---VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
...+..+...+...++ +.+|+.++++.. ..+.....+..++..|...|++++|...+++..+.
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2355666666777788 777777777621 11223457778999999999999999999988653
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=8.8e-11 Score=93.86 Aligned_cols=170 Identities=16% Similarity=0.071 Sum_probs=142.6
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+..+...+...|++++|...++.+.+. .|.+..++..+...+...|++++|.+.++++....| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345667777888999999999999999887 566889999999999999999999999999988754 67789999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHH
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRIL 347 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 347 (415)
+...|++++|...++++... .|+.... +..+...+...|++++|.+.+++.....| +...+..+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~-------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 150 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNV-------------RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHH-------------HHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999999999999999875 3433221 22366778999999999999988765533 56789999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcccCCCc
Q 039757 348 LGACSFHGNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
...+...|++++|...++++.+..|.+..
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999999999998877543
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=7.1e-11 Score=98.30 Aligned_cols=154 Identities=9% Similarity=-0.084 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
+.++..+......+...|++++|.+.|++..... ++...+..+..++...|++++|...|++..+. .|+....
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~--- 78 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANA--- 78 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHH---
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHH---
Confidence 4477889999999999999999999999998874 57777777999999999999999999999874 5664332
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-H-------HHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-V-------VVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
+..+...|...|++++|.+.+++.....|+ . ..|..+...+...|++++|++.++++++..|
T Consensus 79 ----------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 79 ----------YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp ----------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred ----------HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 333777799999999999999887665443 3 4577888889999999999999999999999
Q ss_pred C--CCccHHHHHHHHHhcCch
Q 039757 373 G--NGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 373 ~--~~~~~~~l~~~~~~~g~~ 391 (415)
. +...+..++.+|...|+.
T Consensus 149 ~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHH
Confidence 8 889999999999888776
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=1.4e-10 Score=99.57 Aligned_cols=235 Identities=11% Similarity=-0.023 Sum_probs=140.1
Q ss_pred HhcCCCchHHHHHHHHHHc-------CCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----------C-chhhHHHH
Q 039757 79 VTLSYPNLGTQLHAVISKV-------GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----------R-NLVTWNVM 140 (415)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~l 140 (415)
...|+++.|...+++..+. ..+....++..+...|...|++++|+..|++..+ | ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4668888888888887652 1123455677777888888888888877776542 1 23356666
Q ss_pred HHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcC
Q 039757 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220 (415)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 220 (415)
...|...|++++|.+.|++... +++.... .
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~-------------------------------------------------~~~~~~~-~ 121 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALE-------------------------------------------------IREKVLG-K 121 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH-------------------------------------------------HHHHHHC-T
T ss_pred HHHHHHhccHHHHHHHHHHHHH-------------------------------------------------HHHHHcC-C
Confidence 6666666666666666665521 0000000 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc---
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------RK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV--- 288 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--- 288 (415)
..|....++..+..+|...|++++|.+.|+++... .| ...++..+...|...|++++|...+++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12335677888899999999999999999988765 22 2456888889999999999999999988763
Q ss_pred ----CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHH
Q 039757 289 ----GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 289 ----g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 363 (415)
...+....+...+..+.. ....+.....+..+...++......| ...++..+...|...|++++|..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 274 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREE-------SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHH-------TTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHh-------cCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 223333333322221100 00011122334455555555554423 334677777778888888888888
Q ss_pred HHHHHHc
Q 039757 364 TRKVLEM 370 (415)
Q Consensus 364 ~~~~~~~ 370 (415)
++++.+.
T Consensus 275 ~~~al~~ 281 (283)
T 3edt_B 275 EDCASRN 281 (283)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8777653
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=7.8e-11 Score=113.95 Aligned_cols=167 Identities=8% Similarity=-0.026 Sum_probs=147.0
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
+...++.+...+.+.|++++|...|++.++. .|.+..++..+..+|.+.|++++|++.|++..+..| +...|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4678899999999999999999999999998 687899999999999999999999999999988866 5788999999
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
+|...|++++|++.|++..+. .|+... .|..+...|.+.|++++|++.|++..+..| +...+..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~-------------a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFAD-------------AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence 999999999999999999885 566543 244478889999999999999998776555 5678999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
+..++...|++++|.+.++++.+..+
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 99999999999999999999887653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=1.6e-11 Score=105.56 Aligned_cols=206 Identities=9% Similarity=-0.035 Sum_probs=142.8
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----C-
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKR------GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----R- 256 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~- 256 (415)
...++..+...+...|++++|...++...+. +..|....++..+..+|...|++++|.+.|+++... +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4556778888889999999999999998865 334556788999999999999999999999998765 1
Q ss_pred --C-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc---CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 257 --K-NLVSWTSIISGFAMHGMGKAAVENFERMQKV---GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 257 --~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
| ...++..+...|...|++++|...+++..+. ...++...... .+..+...|...|++++|...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------~~~~la~~~~~~g~~~~A~~~ 191 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK----------TKNNLASCYLKQGKYQDAETL 191 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH----------HHHHHHHHHHHHTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH----------HHHHHHHHHHHcCCHHHHHHH
Confidence 2 3456888999999999999999999998764 11122221111 134478889999999999999
Q ss_pred HhcCCCC---------Cc-CHHHHHHHHHHHhhcCCh------HHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhH
Q 039757 331 ALGIPSE---------IT-DVVVRRILLGACSFHGNV------EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394 (415)
Q Consensus 331 ~~~~~~~---------~p-~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 394 (415)
+++.... .+ ....|..+...+...+.. ..+...++......+....++..++.+|...|++++|
T Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 271 (283)
T 3edt_B 192 YKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAA 271 (283)
T ss_dssp HHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8766532 12 222344443333333322 2333333222222222456788999999999999999
Q ss_pred HHHHHHHhhh
Q 039757 395 ERLRRVMDER 404 (415)
Q Consensus 395 ~~~~~~m~~~ 404 (415)
..++++..+.
T Consensus 272 ~~~~~~al~~ 281 (283)
T 3edt_B 272 HTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=3.2e-10 Score=96.48 Aligned_cols=205 Identities=9% Similarity=-0.071 Sum_probs=151.2
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC----h
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD---IRVSNCLIDTYAKCGCIFSALKLFEDISVERKN----L 259 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~ 259 (415)
+.+...+......+.+.|++++|...|+.+.+. .|.+ ...+..+..+|.+.|++++|...|++.....|+ .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 345567777888889999999999999999987 4545 778889999999999999999999999887542 3
Q ss_pred hhHHHHHHHHHc--------cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH----ccCCcchHHHHHHhHhcCCHHHH
Q 039757 260 VSWTSIISGFAM--------HGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC----SHGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 260 ~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~~li~~~~~~g~~~~A 327 (415)
..+..+..++.. .|++++|...|++..+. .|+........... ......+..+...|.+.|++++|
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 457778888888 99999999999999885 45543322211000 00000112367778999999999
Q ss_pred HHHHhcCCCCCcC----HHHHHHHHHHHhhc----------CChHHHHHHHHHHHHcccCCC---ccHHHHHHHHHhcCc
Q 039757 328 EKIALGIPSEITD----VVVRRILLGACSFH----------GNVEMGERVTRKVLEMERGNG---GDYVLMYNILAGVGR 390 (415)
Q Consensus 328 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~ 390 (415)
+..|+.+....|+ ...+..+..+|... |++++|...++++.+..|.++ .+...+...+.+.|+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999887655443 34677777777765 888999999999999888765 345555666666666
Q ss_pred hhhHH
Q 039757 391 YVDAE 395 (415)
Q Consensus 391 ~~~A~ 395 (415)
++++.
T Consensus 248 ~~~~~ 252 (261)
T 3qky_A 248 LEGDA 252 (261)
T ss_dssp HHTCT
T ss_pred hhhhh
Confidence 65543
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=2.2e-09 Score=96.39 Aligned_cols=274 Identities=12% Similarity=-0.005 Sum_probs=185.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCch----hHHHHHHHHHhcCCCchHHHHHHHHHHcCCC-Cc
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSF----TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ-SH 102 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~ 102 (415)
.......+...|++++|...+++.. ..... . +.. +++.+...+...|+++.|.+.+++..+.... ++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al---~~~~~--~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLAL---EELPP--G---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---HTCCT--T---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH---HcCCC--C---chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 3344556678999999999999988 43322 1 322 5667777888999999999999988653211 11
Q ss_pred ----hhhHHHHHHHHHcCCChhHHHHHhcccCC----------C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhH
Q 039757 103 ----VYVNTALVNMYVSLGFLKDSSKLFDELPE----------R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167 (415)
Q Consensus 103 ----~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 167 (415)
..++..+...+...|++++|...+++..+ | ....+..+...+...|++++|...+++.......
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~- 167 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS- 167 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc-
Confidence 23356677888999999999999987653 1 1235677888899999999999999886521100
Q ss_pred HHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHH-----HHHHHHHhcCCH
Q 039757 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN-----CLIDTYAKCGCI 242 (415)
Q Consensus 168 ~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~ 242 (415)
.+ .......+..+...+...|++++|...++........+.....+. ..+..+...|++
T Consensus 168 ----------~~------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 168 ----------YQ------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp ----------SC------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------cC------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 00 011234566777788899999999999998876422221211221 234557899999
Q ss_pred HHHHHHHHHhhhhCCC-----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHH
Q 039757 243 FSALKLFEDISVERKN-----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVD 316 (415)
Q Consensus 243 ~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~ 316 (415)
++|...+++.....+. ...+..+...+...|++++|...+++.....-... .... ... +..+..
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~---~~~-------~~~la~ 301 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL---NRN-------LLLLNQ 301 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH---HHH-------HHHHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH---HHH-------HHHHHH
Confidence 9999999998764322 12466778889999999999999998865311111 1110 001 122566
Q ss_pred HhHhcCCHHHHHHHHhcCCC
Q 039757 317 MLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~ 336 (415)
.+...|+.++|...+++...
T Consensus 302 ~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 68888999999988876554
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=4.1e-10 Score=95.81 Aligned_cols=173 Identities=9% Similarity=-0.076 Sum_probs=138.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
.|.+...+..+...+.+.|++++|...|+++....|+ ...+..+..+|...|++++|...|++..+. .|+....
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~ 88 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRV 88 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchh
Confidence 4557888888999999999999999999999987554 567888999999999999999999999885 4543322
Q ss_pred HHHHHHHccCCcchHHHHHHhHh--------cCCHHHHHHHHhcCCCCCcCH-HHH-----------------HHHHHHH
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGR--------AGRLEQAEKIALGIPSEITDV-VVR-----------------RILLGAC 351 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~p~~-~~~-----------------~~l~~~~ 351 (415)
... +..+...+.. .|++++|...|+++....|+. ... ..+...|
T Consensus 89 ~~a----------~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 89 PQA----------EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp HHH----------HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 2225666777 999999999999877654532 233 4567789
Q ss_pred hhcCChHHHHHHHHHHHHcccCCC---ccHHHHHHHHHhc----------CchhhHHHHHHHHhhhcc
Q 039757 352 SFHGNVEMGERVTRKVLEMERGNG---GDYVLMYNILAGV----------GRYVDAERLRRVMDERNA 406 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~ 406 (415)
...|++++|+..|+++++..|.+. ..+..++.+|... |++++|...++++.+...
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 999999999999999999988743 5788899999876 999999999999887653
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=1.1e-09 Score=90.93 Aligned_cols=182 Identities=8% Similarity=-0.035 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh----hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH--HHH
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF--LSV 300 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--~~l 300 (415)
..+..+...+...|++++|...|+++....|+. ..+..+..+|.+.|++++|...|+++.+. .|+.... ...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 344445556666666666666666666553321 34555666666666666666666666653 3333211 111
Q ss_pred HHH--HccCCc----chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHH-HH-----------------HHHHHHHhhcCC
Q 039757 301 LNA--CSHGGL----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV-VR-----------------RILLGACSFHGN 356 (415)
Q Consensus 301 l~~--~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~~~ 356 (415)
..+ +...+. .|..+...+...|+.++|...|+++....|+.. .+ ..+...|.+.|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 111 000000 001122234457899999999998887756432 22 234567889999
Q ss_pred hHHHHHHHHHHHHcccCCC---ccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCC
Q 039757 357 VEMGERVTRKVLEMERGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
+++|+..|+++++..|.++ .++..++.+|.+.|++++|.+.++.+...+.....
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999999998854 67889999999999999999999998887665443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=9.3e-10 Score=95.26 Aligned_cols=248 Identities=10% Similarity=-0.063 Sum_probs=159.8
Q ss_pred chHHHHHHHHHHcCCCCchhhHHHHHHHHHcC--C-ChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSL--G-FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 85 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
.+|.+++.+..+. .++....+ .+ .+. + ++++|...|+.. ...|...|++++|.+.|++..
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence 4577777777665 23322223 22 232 2 477777766554 456777888888888887764
Q ss_pred CCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC----CCHHHHHHHHHHHH
Q 039757 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA----FDIRVSNCLIDTYA 237 (415)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~ 237 (415)
+- +.+.|+ ......++..+...+...|++++|...+++..+..... ....+++.+..+|.
T Consensus 65 ~~-----------~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 65 DY-----------QKKAGN-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HH-----------HHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HH-----------HHHhCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 111110 01113466777777888888888888887777542111 12457888999999
Q ss_pred hc-CCHHHHHHHHHHhhhhCC---C----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 238 KC-GCIFSALKLFEDISVERK---N----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 238 ~~-g~~~~A~~~~~~~~~~~~---~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
.. |++++|...|++.....| + ..+++.+...+...|++++|+..|++............+.. ..
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~------- 200 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL-KD------- 200 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH-HH-------
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH-HH-------
Confidence 96 999999999999877522 1 35688899999999999999999999988643322211110 00
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHH------HHHHHHHHHh--hcCChHHHHHHHHHHHHcccC
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV------VRRILLGACS--FHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.|..+...+...|++++|...|++.....|+.. .+..++.++. ..+++++|+..|+.+...+|.
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 022366678899999999999998877534322 3444555554 456788888888776665543
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=1.3e-08 Score=86.74 Aligned_cols=248 Identities=10% Similarity=0.023 Sum_probs=164.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 154 (415)
++-..-.|++..++.-...+. ...++ ....-+.++|...|+++... -..|.......+...+ ..+ |+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~--~~~~~-~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS--KVTDN-TLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS--CCCCH-HHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHHhhHHHHHHHHHHhcC--ccchH-HHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHHHHHh-ccc----HH
Confidence 444556788877776332221 11222 22333457788888876421 1123333333333333 322 66
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 234 (415)
..|++..+.+ .++..++..+..++...|++++|.+++...+..+-.+.+...+..++.
T Consensus 87 ~~l~~l~~~~----------------------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 87 EELENLLKDK----------------------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp HHHHHTTTTS----------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHhcC----------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 6777665322 233444557777888899999999999998776532358888999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCC-----ChhhHHHHHHH--HHc--cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHc
Q 039757 235 TYAKCGCIFSALKLFEDISVERK-----NLVSWTSIISG--FAM--HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~--~~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (415)
.+.+.|+.+.|.+.+++|....| +..+...|+.+ ... .+++++|..+|+++.+. .|+..+...
T Consensus 145 i~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~l------ 216 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLG------ 216 (310)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHH------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHH------
Confidence 99999999999999999988777 24555555555 333 34899999999999775 455333333
Q ss_pred cCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC----------Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 306 HGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE----------IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
+..++.+.|++++|.+.++.+... .| ++.+...+|......|+ .|.++++++.+..|.+
T Consensus 217 --------Lln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 217 --------LLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp --------HHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred --------HHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 233588999999999999865442 13 55667556655556676 8899999999999887
Q ss_pred C
Q 039757 375 G 375 (415)
Q Consensus 375 ~ 375 (415)
+
T Consensus 287 p 287 (310)
T 3mv2_B 287 A 287 (310)
T ss_dssp H
T ss_pred h
Confidence 6
No 92
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.13 E-value=5.2e-08 Score=93.27 Aligned_cols=344 Identities=10% Similarity=-0.005 Sum_probs=226.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC--
Q 039757 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-- 118 (415)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-- 118 (415)
..+-+..|+..+ ..++. |..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.|+
T Consensus 48 ~~d~i~~lE~~l---~~np~------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~ 117 (679)
T 4e6h_A 48 ESDVIGKLNDMI---EEQPT------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEEL 117 (679)
T ss_dssp CSCHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CC
T ss_pred CHHHHHHHHHHH---HHCcC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcc
Confidence 344556667766 66656 9999999999999999999999999999887 46678889999999888898
Q ss_pred -hhHHHHHhcccCC-----CchhhHHHHHHHHHhhCCH--------HHHHHHHhhCC------CC-ChhHHHHHHHHHHh
Q 039757 119 -LKDSSKLFDELPE-----RNLVTWNVMITGLVKWGEL--------EYARSLFEEMP------CR-NVVSWTGILDGYTR 177 (415)
Q Consensus 119 -~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~------~~-~~~~~~~li~~~~~ 177 (415)
++.+..+|++... |++..|...+....+.++. +.+.++|+... .+ +...|...+.....
T Consensus 118 ~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 118 DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp CHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 9999999998764 6777888888776666554 33446666532 12 22345544433221
Q ss_pred ---------ccCCCCc-------cCCCc---hHHH---------------------------------------------
Q 039757 178 ---------MNRSNGA-------STEPS---EITI--------------------------------------------- 193 (415)
Q Consensus 178 ---------~~~~~~a-------~~~~~---~~~~--------------------------------------------- 193 (415)
.++.+.+ +..|. ..+|
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 1111111 11110 0000
Q ss_pred ----------------------------HhHHHHHhhcC-------ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh
Q 039757 194 ----------------------------LAVLPAIWQNG-------AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238 (415)
Q Consensus 194 ----------------------------~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (415)
...+.--...+ ..+.+..+|++.+.. .|....+|-..+..+..
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGE 355 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHh
Confidence 00000000000 012234556666665 46577778778888888
Q ss_pred cCCHHHHH-HHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCC---------CCCh--------hhHHH
Q 039757 239 CGCIFSAL-KLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGL---------KPNR--------VTFLS 299 (415)
Q Consensus 239 ~g~~~~A~-~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---------~p~~--------~~~~~ 299 (415)
.|+.++|. ++|++....-| +...|-..+...-..|++++|..+|+++..... .|+. .++..
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 89999996 99999877644 555677888888899999999999999886410 1321 01111
Q ss_pred HHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-C-cCHHHHHHHHHHHhhc-CChHHHHHHHHHHHHcccCCCc
Q 039757 300 VLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-I-TDVVVRRILLGACSFH-GNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 300 ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
.|...+....+.|..+.|.++|...... . +....|...+..-.+. ++.+.|.++|+..++..+.++.
T Consensus 436 ----------vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 436 ----------VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp ----------HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence 1333566667788899999999877543 1 1233443333333333 4589999999999998887777
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 377 DYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 377 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+...+......|+.+.|..+|++......
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 777888888888999999999988776554
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=5.6e-10 Score=96.68 Aligned_cols=198 Identities=6% Similarity=-0.151 Sum_probs=140.1
Q ss_pred HHHHhhcCChhHHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHH
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSI 265 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~l 265 (415)
...+...|++++|...|.+..+. |-.+....+|+.+..+|...|++++|...|++..... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566788888888888877654 2112125789999999999999999999999987652 12 3578899
Q ss_pred HHHHHcc-CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC---H
Q 039757 266 ISGFAMH-GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD---V 341 (415)
Q Consensus 266 i~~~~~~-~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~ 341 (415)
...|... |++++|+..|++..+. .|+......... .+..+...|.+.|++++|+..|++.....|+ .
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNK-------CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 9999996 9999999999998764 221110000011 1344788899999999999999876654222 1
Q ss_pred -----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc-----cHHHHHHHHH--hcCchhhHHHHHHHHhh
Q 039757 342 -----VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG-----DYVLMYNILA--GVGRYVDAERLRRVMDE 403 (415)
Q Consensus 342 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 403 (415)
..|..+..++...|++++|...+++..+..|.... .+..++.++. ..+++++|...++++..
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 15677788899999999999999999998876333 2344566664 45778888888876644
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=9.5e-10 Score=82.63 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=50.3
Q ss_pred hHhcCCHHHHHHHHhcCCCCC-cCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHH
Q 039757 318 LGRAGRLEQAEKIALGIPSEI-TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
+...|++++|...++++.... .+...+..+...+...|++++|.+.++++.+..+.+...+..++.++...|++++|..
T Consensus 45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence 344444444444444332221 1334455555666666666666666666666666566666666666667777777777
Q ss_pred HHHHHhhhc
Q 039757 397 LRRVMDERN 405 (415)
Q Consensus 397 ~~~~m~~~~ 405 (415)
.++++.+.+
T Consensus 125 ~~~~~~~~~ 133 (136)
T 2fo7_A 125 YYQKALELD 133 (136)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHccC
Confidence 666665543
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=2e-08 Score=82.31 Aligned_cols=176 Identities=11% Similarity=-0.049 Sum_probs=143.8
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccC----chHHHHHHHH
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG----MGKAAVENFE 283 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~A~~~~~ 283 (415)
+|...|++..+.| ++..+..|...|...+++++|.+.|++..+. .+...+..|...|.. + ++++|..+|+
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4667777777765 8889999999999999999999999998874 467788888888888 6 8999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh----cCCHHHHHHHHhcCCCCCcC---HHHHHHHHHHHhh---
Q 039757 284 RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR----AGRLEQAEKIALGIPSEITD---VVVRRILLGACSF--- 353 (415)
Q Consensus 284 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~--- 353 (415)
+..+.| +...+.. |...|.. .+++++|++.|+......|. ...+..|...|..
T Consensus 78 ~A~~~g---~~~a~~~--------------Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 78 KAVEAG---SKSGEIV--------------LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp HHHHTT---CHHHHHH--------------HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHCC---CHHHHHH--------------HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCC
Confidence 998754 2333222 5555665 88999999999988887443 6788889888888
Q ss_pred -cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhc-C-----chhhHHHHHHHHhhhccc
Q 039757 354 -HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV-G-----RYVDAERLRRVMDERNAL 407 (415)
Q Consensus 354 -~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 407 (415)
.+++++|..+|++..+. +.++..+..|..+|... | ++++|..++++..+.|..
T Consensus 141 ~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp SSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88999999999999988 45677888999998764 3 899999999999887754
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.08 E-value=2e-09 Score=92.87 Aligned_cols=166 Identities=11% Similarity=-0.090 Sum_probs=138.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
|.+...+..+...+...|++++|...|+++....| +...+..+...+...|++++|...+++.... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~-~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL-V 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH-H
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH-H
Confidence 55777888899999999999999999999988866 6778999999999999999999999998764 565443222 1
Q ss_pred HHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC--CccH
Q 039757 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN--GGDY 378 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 378 (415)
....+.+.++.++|...+++.....| +...+..+...+...|++++|+..++++.+..|.+ ...+
T Consensus 191 ------------~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 191 ------------AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp ------------HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred ------------HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 22336677788888888877765545 57789999999999999999999999999999886 7889
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 379 VLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 379 ~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
..++..+...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999887654
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=1.2e-09 Score=86.77 Aligned_cols=161 Identities=12% Similarity=0.003 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
.+..+...+...|++++|...|++.....| +...+..+...+...|++++|...|++.... .|+. .+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~-~~~~~~~~--- 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDN-SYKSLIAK--- 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCH-HHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCCh-HHHHHHHH---
Confidence 445566778888888888888888776644 5677888888888888888888888887654 3432 22221111
Q ss_pred CCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC--CccHHHHHH
Q 039757 307 GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN--GGDYVLMYN 383 (415)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~ 383 (415)
+. +...+...+|...+++.....| +...+..+...+...|++++|...++++.+..|.. ...+..++.
T Consensus 82 --------~~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 82 --------LE-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp --------HH-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred --------HH-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 11 1122223346666666554445 56788888999999999999999999999988764 558889999
Q ss_pred HHHhcCchhhHHHHHHHHhh
Q 039757 384 ILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~ 403 (415)
++...|+.++|...+++...
T Consensus 153 ~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999887654
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.06 E-value=6.2e-09 Score=86.29 Aligned_cols=185 Identities=12% Similarity=-0.010 Sum_probs=135.5
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChh----hHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV----SWTS 264 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~ 264 (415)
...+......+...|++++|...|+.+.+..-. +.....+..+..+|.+.|++++|...|+++....|+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556677788999999999999999986321 21246788899999999999999999999988755432 3445
Q ss_pred HHHHHHc------------------cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH----ccCCcchHHHHHHhHhcC
Q 039757 265 IISGFAM------------------HGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC----SHGGLHYGCLVDMLGRAG 322 (415)
Q Consensus 265 li~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~~li~~~~~~g 322 (415)
+..++.. .|++++|...|+++.+. .|+........... .........+...|.+.|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5555543 67999999999999885 56654322111000 000001123567789999
Q ss_pred CHHHHHHHHhcCCCCCcCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc
Q 039757 323 RLEQAEKIALGIPSEITDV----VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
++++|...|+.+....|+. ..+..+..++.+.|+.++|.+.++.+...+|.+..
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999887665543 46888999999999999999999999998887543
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=2.2e-10 Score=88.46 Aligned_cols=143 Identities=6% Similarity=-0.105 Sum_probs=93.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcch
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 311 (415)
...+...|++++|+..+.+.....| +...+..+...|.+.|++++|...|++..+. .|+.... |
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a-------------~ 68 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKA-------------H 68 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-------------H
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-------------H
Confidence 3444555666777777666655433 3445566667777777777777777776663 4544332 2
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHH-HHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERV-TRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
..+...|.+.|++++|+..|+......| +..+|..+...|.+.|++++|.+. ++++.+..|.++.+|......+...|
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 2355556777777777777766554434 456778888888888888765554 58888888888888888888877776
Q ss_pred c
Q 039757 390 R 390 (415)
Q Consensus 390 ~ 390 (415)
+
T Consensus 149 ~ 149 (150)
T 4ga2_A 149 E 149 (150)
T ss_dssp C
T ss_pred c
Confidence 4
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=4.9e-09 Score=85.71 Aligned_cols=163 Identities=13% Similarity=0.007 Sum_probs=124.1
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhhhhCC
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC----------------LIDTYAKCGCIFSALKLFEDISVERK 257 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~~~~~ 257 (415)
......+...|++++|...|+...+. .|.+...+.. +..+|.+.|++++|...|++..+..|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 34445667899999999999999987 5667777777 99999999999999999999988866
Q ss_pred -ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcC--CHHHHHHHHhcC
Q 039757 258 -NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG--RLEQAEKIALGI 334 (415)
Q Consensus 258 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~ 334 (415)
+...+..+..+|...|++++|...|++..+. .|+..... ..+...|...| +.+.+...++..
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~-------------~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAAN-------------IFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH-------------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH-------------HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999885 56654322 22444454443 345667777776
Q ss_pred CCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 335 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
....|....+.....++...|++++|+..|+++++..|.
T Consensus 151 ~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654333334455566677889999999999999998875
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=1.3e-08 Score=80.70 Aligned_cols=158 Identities=14% Similarity=0.052 Sum_probs=120.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCC
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~ 181 (415)
.+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..|++....+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----------------- 70 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY----------------- 70 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----------------
Confidence 345566778889999999999999885 356788889999999999999999999987532
Q ss_pred CCccCCCchHHHHhHHHH-HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--
Q 039757 182 NGASTEPSEITILAVLPA-IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-- 258 (415)
Q Consensus 182 ~~a~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-- 258 (415)
|+.......... +...+....+...++...+. .|.+...+..+..++...|++++|...|+++....|+
T Consensus 71 ------p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 142 (176)
T 2r5s_A 71 ------QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ 142 (176)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred ------CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence 111111111101 11222334467788888876 5778999999999999999999999999999887654
Q ss_pred -hhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 259 -LVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 259 -~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
...+..+...+...|+.++|...|++...
T Consensus 143 ~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 143 DGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45789999999999999999999987654
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=5e-09 Score=78.58 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR-VTFLSVLNACS 305 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 305 (415)
.+..+...+...|++++|..+|+++....| +...+..+...+...|++++|...++++...+ |+. ..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~------- 73 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWY------- 73 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH-------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHH-------
Confidence 345566666677777777777776665533 45556666666777777777777777766542 322 2221
Q ss_pred cCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 306 HGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.+...+...|++++|.+.++++....| +...+..+...+...|++++|...++++.+..|
T Consensus 74 -------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 74 -------NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp -------HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred -------HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 245556677777777777766544322 455667777777777888888888877776654
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=6.9e-10 Score=107.67 Aligned_cols=183 Identities=13% Similarity=-0.033 Sum_probs=149.2
Q ss_pred hhcCChhHHHHHHhhhh--------hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHc
Q 039757 201 WQNGAVRNCQLIHGYGE--------KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 271 (415)
...|++++|...+++.. +. .|.+...+..+..+|...|++++|.+.|+++.+..| +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 77899999999999998 43 576888999999999999999999999999988755 67889999999999
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHH
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGA 350 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 350 (415)
.|++++|...|++..+. .|+.... +..+...|.+.|++++ ++.|++.....| +...|..+..+
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~-------------~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAP-------------KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHH-------------HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHH-------------HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 99999999999999885 5655332 2236667899999999 999887765534 56789999999
Q ss_pred HhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc--------hhhHHHHHHHH
Q 039757 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR--------YVDAERLRRVM 401 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~m 401 (415)
+...|++++|++.|+++.+.+|.+..++..++.++...|+ +++|.+.++.+
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999999888899999998866554 55555555443
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=1.4e-08 Score=87.51 Aligned_cols=173 Identities=13% Similarity=0.049 Sum_probs=138.0
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCCh
Q 039757 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165 (415)
Q Consensus 89 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 165 (415)
.+.+.+... .+.+...+..+...+.+.|++++|+..|++..+ | +...+..+...+.+.|++++|...|++....+
T Consensus 104 ~l~~~l~~~-lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~- 181 (287)
T 3qou_A 104 AIRALLDXV-LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD- 181 (287)
T ss_dssp HHHHHHHHH-SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-
T ss_pred HHHHHHHHH-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-
Confidence 343444333 355667777788889999999999999999864 4 56789999999999999999999999997533
Q ss_pred hHHHHHHHHHHhccCCCCccCCCch-HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039757 166 VSWTGILDGYTRMNRSNGASTEPSE-ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244 (415)
Q Consensus 166 ~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (415)
|+. .........+...++.+.|...++..... .|.+...+..+...+...|++++
T Consensus 182 ----------------------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~ 237 (287)
T 3qou_A 182 ----------------------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEE 237 (287)
T ss_dssp ----------------------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHH
Confidence 221 12222233356677788888999998887 68799999999999999999999
Q ss_pred HHHHHHHhhhhCCC---hhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 245 ALKLFEDISVERKN---LVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 245 A~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
|.+.|+++....|+ ...+..++..|...|+.++|...|++...
T Consensus 238 A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 238 ALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999988664 56799999999999999999999887643
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=5.9e-09 Score=99.25 Aligned_cols=163 Identities=10% Similarity=-0.041 Sum_probs=122.8
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVEN 281 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~ 281 (415)
.|++++|...+++..+. .|.+...+..+...|...|++++|.+.|++..+..| +...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46888999999998876 576899999999999999999999999999988755 577899999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhc---CCh
Q 039757 282 FERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFH---GNV 357 (415)
Q Consensus 282 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~ 357 (415)
+++..+. .|+.... +..+...|.+.|++++|.+.+++.....| +...+..+...+... |+.
T Consensus 80 ~~~al~~--~p~~~~~-------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~ 144 (568)
T 2vsy_A 80 LQQASDA--APEHPGI-------------ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144 (568)
T ss_dssp HHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHhc--CCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccH
Confidence 9999885 4554321 23367779999999999999988765534 567888899999999 999
Q ss_pred HHHHHHHHHHHHcccCCCccHHHHH
Q 039757 358 EMGERVTRKVLEMERGNGGDYVLMY 382 (415)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~l~ 382 (415)
++|.+.++++.+.++.+...|..+.
T Consensus 145 ~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 145 DVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999998877776665
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1.8e-08 Score=97.69 Aligned_cols=180 Identities=11% Similarity=-0.012 Sum_probs=140.7
Q ss_pred HhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC
Q 039757 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (415)
...|++++|++.|++...... +......+.+...+..+..++...|++++|...++.+.+. .|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~--------------~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~ 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGAL--------------DADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGW 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCC
T ss_pred ccccCHHHHHHHHHHhhhhcc--------------cccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--Ccc
Confidence 788999999999998751000 0000001334567778888889999999999999999987 577
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
+...+..+..+|...|++++|.+.|++.....| +...|..+..+|.+.|++++ ...|++..+. .|+....
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a------ 536 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISA------ 536 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHH------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHH------
Confidence 899999999999999999999999999988866 56789999999999999999 9999999875 5654331
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCC
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGN 356 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 356 (415)
|..+...|.+.|++++|.+.|++.....|+ ...+..+..++...++
T Consensus 537 -------~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 537 -------AFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred -------HHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 333777799999999999999999887665 4577778888777555
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=1.4e-08 Score=83.00 Aligned_cols=189 Identities=13% Similarity=0.041 Sum_probs=126.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhh
Q 039757 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216 (415)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 216 (415)
+......+...|++++|+..|++..+.++........ .... .. ..........+..++...|++++|...|+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--~~~~---~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW--TNVD---KN-SEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH--HHSC---TT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH--hhhc---ch-hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344455667788888888887776433221111100 0000 00 1112223344778889999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCc--hHHHHHHHHHHHhcCCCCC
Q 039757 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGM--GKAAVENFERMQKVGLKPN 293 (415)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~ 293 (415)
.+. .|.+...+..+..+|...|++++|...|+++....| +..+|..+..+|...|+ .+.+...++... .|+
T Consensus 81 l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~ 154 (208)
T 3urz_A 81 LQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPT 154 (208)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCC
T ss_pred HHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCC
Confidence 998 677999999999999999999999999999988866 57789999888876654 344555565543 355
Q ss_pred hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHH
Q 039757 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349 (415)
Q Consensus 294 ~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 349 (415)
...+.... +...+...|++++|...|++.....|+......+.+
T Consensus 155 ~~~~a~~~------------~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 155 KMQYARYR------------DGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHH------------HHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred chhHHHHH------------HHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44433211 333466689999999999998888788665544443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=7.8e-09 Score=98.39 Aligned_cols=154 Identities=11% Similarity=-0.034 Sum_probs=117.1
Q ss_pred cCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHH
Q 039757 239 CGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDM 317 (415)
Q Consensus 239 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~ 317 (415)
.|++++|.+.|++..+..| +...+..+...|...|++++|...|++..+. .|+.... +..+...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-------------~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEA-------------VARLGRV 66 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHH-------------HHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-------------HHHHHHH
Confidence 4788999999999887755 5788999999999999999999999999885 5654332 2336777
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhc---Cchhh
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV---GRYVD 393 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~ 393 (415)
|...|++++|.+.+++.....| +...+..+..++...|++++|.+.++++.+..|.+...+..++.++... |++++
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH
Confidence 9999999999999988766544 5678999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhhccc
Q 039757 394 AERLRRVMDERNAL 407 (415)
Q Consensus 394 A~~~~~~m~~~~~~ 407 (415)
|.+.+++..+.+..
T Consensus 147 A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 147 LSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999877654
No 109
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=8.7e-09 Score=88.50 Aligned_cols=194 Identities=12% Similarity=-0.016 Sum_probs=139.5
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
+...+..+...+...|++++|...|+...+. .|.+...+..+..+|.+.|++++|...+++.....| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456777888889999999999999999987 577899999999999999999999999999988755 5678999999
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChh-hHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRV-TFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 346 (415)
+|...|++++|...|++..+. .|+.. .+...+.. .....+...+.. .-..... ++......
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~--~~~~i~~~ 142 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPS-----------ALRIAKKKRWNS---IEERRIH--QESELHSY 142 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHH-----------HHHHHHHHHHHH---HHHTCCC--CCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHH-----------HHHHHHHHHHHH---HHHHHHh--hhHHHHHH
Confidence 999999999999999998764 23221 11111100 001222222222 2222111 23333333
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhc-CchhhHHHHHHHHhhh
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV-GRYVDAERLRRVMDER 404 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 404 (415)
+.. + ..|+.++|++.+++..+..|.+......+...+.+. +++++|.++|+++.+.
T Consensus 143 l~~-l-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 143 LTR-L-IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHH-H-HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHH-H-HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 322 2 368999999999999988887666666666666665 7899999999988764
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=3.3e-07 Score=77.11 Aligned_cols=190 Identities=8% Similarity=-0.067 Sum_probs=120.2
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHH-------HHHHHhcCCCchHHHHHHHHHHcCCCCc-------
Q 039757 37 LADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFL-------IRTCVTLSYPNLGTQLHAVISKVGFQSH------- 102 (415)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~g~~~~------- 102 (415)
..++...|.+.|.++. ...+. ....|..+ ...+.+.++...+...+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~---~~dP~------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~ 86 (282)
T 4f3v_A 18 LPMSEARSLDLFTEIT---NYDES------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIA 86 (282)
T ss_dssp TTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEE
T ss_pred cCCCHHHHHHHHHHHH---HhChh------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhc
Confidence 5899999999999999 66666 77888877 4556666666666665555433 2222
Q ss_pred ---------------hhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCC-C
Q 039757 103 ---------------VYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCR-N 164 (415)
Q Consensus 103 ---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~ 164 (415)
......+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... +
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 12234456777788888888888888864 44336666667788888888888888755321 1
Q ss_pred hhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC-CHHHHHHHHHHHHhcCCHH
Q 039757 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-DIRVSNCLIDTYAKCGCIF 243 (415)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 243 (415)
. ......+..+..++...|++++|...|++.......|. ..........++.+.|+.+
T Consensus 167 ~---------------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d 225 (282)
T 4f3v_A 167 K---------------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES 225 (282)
T ss_dssp H---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH
T ss_pred c---------------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH
Confidence 0 00122444555566666666666666666654322132 2334455556666666666
Q ss_pred HHHHHHHHhhhhCCC
Q 039757 244 SALKLFEDISVERKN 258 (415)
Q Consensus 244 ~A~~~~~~~~~~~~~ 258 (415)
+|..+|+++....|+
T Consensus 226 eA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 226 AAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCc
Confidence 666666666665454
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=3.8e-08 Score=85.72 Aligned_cols=199 Identities=8% Similarity=-0.092 Sum_probs=135.0
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCC
Q 039757 38 ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117 (415)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 117 (415)
.|++++|.+++++..+ .... .. +...++++.|...|+.+ ...|...|
T Consensus 4 ~~~~~eA~~~~~~a~k---~~~~------~~---------~~~~~~~~~A~~~~~~a---------------~~~~~~~g 50 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEK---YLKT------SF---------MKWKPDYDSAASEYAKA---------------AVAFKNAK 50 (307)
T ss_dssp HHHHHHHHHHHHHHHH---HHCC------CS---------SSCSCCHHHHHHHHHHH---------------HHHHHHTT
T ss_pred cchHHHHHHHHHHHHH---Hccc------cc---------cCCCCCHHHHHHHHHHH---------------HHHHHHcC
Confidence 5677888888887763 1111 10 01135666666666554 34566778
Q ss_pred ChhHHHHHhcccCC-----Cc----hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC
Q 039757 118 FLKDSSKLFDELPE-----RN----LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188 (415)
Q Consensus 118 ~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~ 188 (415)
++++|...|.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+- +.+.|+ ...
T Consensus 51 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-----------~~~~g~-----~~~ 114 (307)
T 2ifu_A 51 QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM-----------YVENGT-----PDT 114 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-----------HHTTTC-----HHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------HHHcCC-----HHH
Confidence 88877777776543 11 346788888888889988888888876421 111111 001
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC---
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN----AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KN--- 258 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--- 258 (415)
...++..+...+.. |++++|...|++..+.... .....++..+...|...|++++|.+.|++..... ++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 13456677777877 9999999999888764211 1125678889999999999999999999987752 12
Q ss_pred -hhhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 259 -LVSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 259 -~~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
...+..+..++...|++++|...|++..
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2356777788888999999999999988
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=7.7e-08 Score=78.79 Aligned_cols=178 Identities=11% Similarity=-0.018 Sum_probs=136.4
Q ss_pred chHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC-CchhhHHHHHHHHHhhC----CHHHHHHHHhh
Q 039757 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMITGLVKWG----ELEYARSLFEE 159 (415)
Q Consensus 85 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~a~~~~~~ 159 (415)
.+|.+.|+...+.| +...+..|...|...+++++|...|+...+ .+...+..|...|.. + ++++|++.|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35778888887765 456677778888888999999999988765 466778888888877 6 89999999988
Q ss_pred CCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhh----cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHH
Q 039757 160 MPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ----NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235 (415)
Q Consensus 160 m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 235 (415)
..+++ +...+..+...+.. .+++++|...|+...+.|.....+..+..|..+
T Consensus 79 A~~~g------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~ 134 (212)
T 3rjv_A 79 AVEAG------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLI 134 (212)
T ss_dssp HHHTT------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHH
T ss_pred HHHCC------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 75433 33344455555554 778999999999999885211127888899999
Q ss_pred HHh----cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHcc-C-----chHHHHHHHHHHHhcCC
Q 039757 236 YAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAMH-G-----MGKAAVENFERMQKVGL 290 (415)
Q Consensus 236 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~A~~~~~~m~~~g~ 290 (415)
|.. .+++++|...|++..+.+.+...+..|...|... | ++++|...|++..+.|.
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988 8899999999999987655667788888888653 3 89999999999988764
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=6e-07 Score=77.25 Aligned_cols=230 Identities=5% Similarity=-0.054 Sum_probs=171.1
Q ss_pred HhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC--CCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 34 FYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS--YPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 34 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
...+....++|+.+++.++ ...+. +..+|+.--..+...+ +++++++.++.+.... +-+..+|+..-.
T Consensus 42 ~~~~~e~s~~aL~~t~~~L---~~nP~------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~ 111 (306)
T 3dra_A 42 LMKAEEYSERALHITELGI---NELAS------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQL 111 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHH---HHCcH------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHH
Confidence 3333444579999999999 67666 7778898888888888 9999999999998875 345666776665
Q ss_pred HH----HcC---CChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHH--HHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 112 MY----VSL---GFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELE--YARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 112 ~~----~~~---g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
.+ ... +++++++.+++.+.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.|+.
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~------------- 178 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK------------- 178 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-------------
Confidence 55 555 789999999999875 46778888877888888888 999999998754422
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCC------hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHh
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGA------VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI-FSALKLFEDI 252 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 252 (415)
+...|+.-...+...+. ++++...+..+... .|.+...|+-+...+.+.|+. +.+..+.+++
T Consensus 179 ---------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 179 ---------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp ---------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred ---------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 22223222222233333 77888888888887 677999999999999888874 4456677766
Q ss_pred hhh----CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 253 SVE----RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 253 ~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
... ..+...+..+...|.+.|+.++|.++++.+.+. +.|-..-|-
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW 296 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFW 296 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHH
Confidence 543 246778899999999999999999999998753 355555443
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=1.1e-08 Score=89.11 Aligned_cols=165 Identities=7% Similarity=-0.072 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
.|......|...|++++|.+.|.+..... .+ ..+|+.+...|...|++++|...|++....-..... ....
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~~~~ 115 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT--PDTA 115 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC--HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC--HHHH
Confidence 45556667777788888888877765541 11 345777777788888888888888776543111111 1111
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-------DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.. .+..+...|.. |++++|+..|++.....| ...++..+...|...|++++|+..++++.+..+.
T Consensus 116 a~-------~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 116 AM-------ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HH-------HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 13346666767 888888777765543311 1346677777788888888888888888776554
Q ss_pred CC------ccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 374 NG------GDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 374 ~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+. ..+..++.++...|++++|...+++..
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 22 245556666777788888888887766
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.86 E-value=6.6e-09 Score=80.05 Aligned_cols=77 Identities=6% Similarity=-0.134 Sum_probs=35.4
Q ss_pred HHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHH
Q 039757 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 277 (415)
.|.+.|++++|...|++.++. .|.+..+|..+..+|...|++++|...|++..+..| +...|..+...|.+.|++++
T Consensus 40 ~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 333344444444444444433 233445555555555555555555555555444433 33444445555555554443
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.83 E-value=1.2e-07 Score=72.82 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=103.4
Q ss_pred HHHHHHHHHhccCCCCcc-CCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 168 WTGILDGYTRMNRSNGAS-TEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 168 ~~~li~~~~~~~~~~~a~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
...+.+.+...+.+.++. ..| +...+..+...+.+.|++++|...|+...+. .|.++..|..+..+|...|++++|
T Consensus 12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A 89 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQA 89 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHH
Confidence 344555555555556655 223 4456778888899999999999999999998 688999999999999999999999
Q ss_pred HHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh
Q 039757 246 LKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295 (415)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 295 (415)
.+.|++.....| +...|..+..+|...|++++|...|++..+. .|+..
T Consensus 90 i~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 90 ADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999988866 5788999999999999999999999999885 46654
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=1.2e-06 Score=81.28 Aligned_cols=337 Identities=9% Similarity=-0.084 Sum_probs=190.3
Q ss_pred hhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-C
Q 039757 5 NNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS-Y 83 (415)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~-~ 83 (415)
...|+++|...+..- |. |+++.+..+|++.. .. . | +...|..-+....+.+ .
T Consensus 11 i~~aR~vyer~l~~~---P~--------------~~~e~~~~iferal---~~--~--p---s~~LW~~Y~~f~~~~~~~ 63 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY---MS--------------KDYRSLESLFGRCL---KK--S--Y---NLDLWMLYIEYVRKVSQK 63 (493)
T ss_dssp -CCHHHHHHHHHHHH---HT--------------TCHHHHHHHHHHHS---TT--C--C---CHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHC---CC--------------CCHHHHHHHHHHHh---cc--C--C---CHHHHHHHHHHHHHhCch
Confidence 555666666655433 33 88999999999987 31 2 5 8889999988887777 3
Q ss_pred CchHHHHHHHHHHc-CCC-CchhhHHHHHHHHHc----CCChhHHHHHhcccCC-Cc---hhhHHHHHHHHHhhCCHHHH
Q 039757 84 PNLGTQLHAVISKV-GFQ-SHVYVNTALVNMYVS----LGFLKDSSKLFDELPE-RN---LVTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 84 ~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~---~~~~~~li~~~~~~g~~~~a 153 (415)
.+....+|+.++.. |.. .+...|...+..+.. .++++.+.++|+.... |. ...|...... .+......+
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~ 142 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITG 142 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccH
Confidence 56788889888754 433 366778877776542 3568889999988765 31 1122222211 111112222
Q ss_pred HHHHhhCCCCC----hhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhc--C-----ChhHHHHHHhhhhhcCCC
Q 039757 154 RSLFEEMPCRN----VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN--G-----AVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 154 ~~~~~~m~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~--~-----~~~~a~~~~~~~~~~~~~ 222 (415)
.+++.+.. |. ...|..+....- ..+...|...+.--... + ..+.+..+|+.++.. .
T Consensus 143 ~~~~~~~~-~~y~~ar~~y~~~~~~~~----------~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~ 209 (493)
T 2uy1_A 143 KKIVGDTL-PIFQSSFQRYQQIQPLIR----------GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--F 209 (493)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHH----------TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHh-HHHHHHHHHHHHHHHHHh----------hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--C
Confidence 22222210 00 000111111000 00111222222221111 0 134567788888886 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcC---------CCCC
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG---------LKPN 293 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~p~ 293 (415)
|..+.+|...+..+...|+.++|..+|++.... |....... .|....+.++. ++.+.+.- ..+.
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcc
Confidence 668899999999999999999999999999888 75443221 22222111222 33332210 0111
Q ss_pred hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhh-cCChHHHHHHHHHHHHcc
Q 039757 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSF-HGNVEMGERVTRKVLEME 371 (415)
Q Consensus 294 ~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~ 371 (415)
.. ... .|...+..+.+.+..+.|..+|+.. .. .++...|......-.. .++.+.|..+|+...+..
T Consensus 283 ~~-~~~----------lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 283 KE-LDL----------LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp HH-HHH----------HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred cc-cHH----------HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 11 111 2334566666778899999999887 33 1233444332222222 236999999999999887
Q ss_pred cCCCccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 372 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
+.++..+...++.....|+.+.|..+++.+
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666777777778888888777765
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=1.5e-07 Score=76.92 Aligned_cols=52 Identities=8% Similarity=-0.088 Sum_probs=28.5
Q ss_pred HHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhC
Q 039757 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160 (415)
Q Consensus 109 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (415)
+...+...|++++|...|++..+++...|..+...+.+.|++++|++.|++.
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 63 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS 63 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555554
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=6.1e-07 Score=73.26 Aligned_cols=131 Identities=10% Similarity=-0.098 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHh
Q 039757 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214 (415)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (415)
..+..+...+...|++++|...|++...+ +...+..+...+...|++++|...++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~ 61 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-------------------------HSRICFNIGCMYTILKNMTEAEKAFT 61 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-------------------------ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34667788889999999999999998543 44567777778888999999999999
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-Ch----------------hhHHHHHHHHHccCchHH
Q 039757 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NL----------------VSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~----------------~~~~~li~~~~~~~~~~~ 277 (415)
...+. .|.+...+..+..+|...|++++|.+.|++.....| +. ..+..+..+|...|++++
T Consensus 62 ~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (213)
T 1hh8_A 62 RSINR--DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK 139 (213)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH
Confidence 99987 466889999999999999999999999999987533 22 678899999999999999
Q ss_pred HHHHHHHHHhcCCCCCh
Q 039757 278 AVENFERMQKVGLKPNR 294 (415)
Q Consensus 278 A~~~~~~m~~~g~~p~~ 294 (415)
|...|++..+. .|+.
T Consensus 140 A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 140 AEEQLALATSM--KSEP 154 (213)
T ss_dssp HHHHHHHHHTT--CCSG
T ss_pred HHHHHHHHHHc--Cccc
Confidence 99999999885 4544
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=2.7e-07 Score=79.75 Aligned_cols=164 Identities=12% Similarity=-0.040 Sum_probs=119.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCCC-h------hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 231 CLIDTYAKCGCIFSALKLFEDISVERKN-L------VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
..+..+...|++++|..++++.....+. . ..+..+...+...|++++|...|++........+... ..+.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~--~~~~- 156 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--QNLY- 156 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--HHHH-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--HHHH-
Confidence 3467788889999999999988775321 1 1234566677778899999999999887433222221 1111
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC-------CCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC-
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS-------EIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN- 374 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 374 (415)
.++.+...|...|++++|...|+++.. ..+ ...++..+...|.+.|++++|+..+++.++..+..
T Consensus 157 ------~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 157 ------IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 144578889999999999988877652 212 23478889999999999999999999998866442
Q ss_pred -----CccHHHHHHHHHhcCc-hhhHHHHHHHHhh
Q 039757 375 -----GGDYVLMYNILAGVGR-YVDAERLRRVMDE 403 (415)
Q Consensus 375 -----~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 403 (415)
..+|..++.+|.+.|+ +++|.+.+++...
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4678899999999995 6999999888764
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=2.7e-08 Score=76.37 Aligned_cols=94 Identities=9% Similarity=-0.050 Sum_probs=85.8
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
.+...+.+.|++++|...|+......| +...|..+..+|...|++++|+..|+++.+..|.++..|..++.+|...|++
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 366778999999999999998876645 6779999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcc
Q 039757 392 VDAERLRRVMDERNA 406 (415)
Q Consensus 392 ~~A~~~~~~m~~~~~ 406 (415)
++|...|++..+...
T Consensus 121 ~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 121 LKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999887653
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=3.7e-06 Score=72.31 Aligned_cols=225 Identities=6% Similarity=-0.038 Sum_probs=163.2
Q ss_pred hHHHHHHhHhhccCCcch-HHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHH----H
Q 039757 7 VTTRIHSHLLTTNSLLHH-TLLFNTLLHFYSLAD--SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC----V 79 (415)
Q Consensus 7 ~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~----~ 79 (415)
.|..+...++... |+ ..+|+.--..+...| +++++++.++.+. ...++ +..+|+.--..+ .
T Consensus 51 ~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L---~~nPk------~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 51 RALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA---LDNEK------NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH---HHCTT------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH---HHCcc------cHHHHHHHHHHHHHHHH
Confidence 4566666665544 44 345888888888888 9999999999999 77766 777887766666 5
Q ss_pred hc---CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh--HHHHHhcccCC---CchhhHHHHHHHHHhhCC--
Q 039757 80 TL---SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK--DSSKLFDELPE---RNLVTWNVMITGLVKWGE-- 149 (415)
Q Consensus 80 ~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-- 149 (415)
.. +++++++++++.+.+.. +-+..+|+....++.+.|.++ ++++.++.+.+ .|...|+.....+.+.|.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 55 78999999999999876 557888988888888899988 99999999886 466788877777777666
Q ss_pred ----HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCC-hhHHHHHHhhhhhcC-CCC
Q 039757 150 ----LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA-VRNCQLIHGYGEKRG-FNA 223 (415)
Q Consensus 150 ----~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~-~~~ 223 (415)
++++++.++++...+ +-+...++.....+.+.|+ .+.+..+...+...+ ..+
T Consensus 198 ~~~~~~eEl~~~~~aI~~~----------------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC----------------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV 255 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC----------------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE
T ss_pred hhhhHHHHHHHHHHHHHhC----------------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC
Confidence 888888888776322 2244444444444444444 333445555555432 235
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CC-ChhhHHHHH
Q 039757 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RK-NLVSWTSII 266 (415)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~li 266 (415)
.+...+..++.+|.+.|+.++|.++++.+.+. .| ....|+..+
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 58889999999999999999999999999863 33 344555443
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=3.5e-07 Score=79.00 Aligned_cols=169 Identities=11% Similarity=-0.044 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-h------hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC-Chhh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-L------VSWTSIISGFAMHGMGKAAVENFERMQKVGLKP-NRVT 296 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~ 296 (415)
....+...+..+...|++++|.+.+++..+..+. . ..+..+...+...|++++|...+++........ +...
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 3445556778889999999999999887765332 1 224456667788899999999999987642221 1111
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC---CCcC-----HHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS---EITD-----VVVRRILLGACSFHGNVEMGERVTRKVL 368 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 368 (415)
... .|+.+...|...|++++|...|++... ..|+ ..++..+...|...|++++|+..+++..
T Consensus 154 ---~~~-------~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 154 ---NLY-------IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp ---HHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 144588889999999999999877652 1222 2588889999999999999999999998
Q ss_pred HcccC------CCccHHHHHHHHHhcCchhhH-HHHHHHHhh
Q 039757 369 EMERG------NGGDYVLMYNILAGVGRYVDA-ERLRRVMDE 403 (415)
Q Consensus 369 ~~~~~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 403 (415)
+.... -..+|..++.+|.+.|++++| ...+++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 76532 145788899999999999999 777776543
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.71 E-value=6.4e-08 Score=85.38 Aligned_cols=165 Identities=12% Similarity=-0.045 Sum_probs=100.5
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
.+++++|...++..... .|.+...+..+...|.+.|++++|...|++.....|+...+ ..+.+..+
T Consensus 126 L~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~- 191 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKA- 191 (336)
T ss_dssp EEEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHH-
T ss_pred EeecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHH-
Confidence 44555666555555443 34466777888888888888888888888877764433100 00000000
Q ss_pred HHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHH
Q 039757 283 ERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGE 361 (415)
Q Consensus 283 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 361 (415)
..+. ... |..+...|.+.|++++|+..+++.....| +...|..+..+|...|++++|+
T Consensus 192 ~~~~-------~~~--------------~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 250 (336)
T 1p5q_A 192 QALR-------LAS--------------HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR 250 (336)
T ss_dssp HHHH-------HHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH-------HHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 0000 011 22244455566666666666655443323 4556777777778888888888
Q ss_pred HHHHHHHHcccCCCccHHHHHHHHHhcCchhhH-HHHHHHHh
Q 039757 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA-ERLRRVMD 402 (415)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 402 (415)
..|+++++..|.+..++..+..++.+.|++++| ..+++.|.
T Consensus 251 ~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 251 ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777788888888888888777 44555543
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=5.2e-08 Score=72.43 Aligned_cols=96 Identities=6% Similarity=-0.067 Sum_probs=86.2
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
+..+...|.+.|++++|++.|++.....| +...|..+..++...|++++|+..++++++.+|.+...|..++.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 34477789999999999999998765534 67799999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhhhcc
Q 039757 390 RYVDAERLRRVMDERNA 406 (415)
Q Consensus 390 ~~~~A~~~~~~m~~~~~ 406 (415)
++++|.+.|++..+.+.
T Consensus 96 ~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 96 EWSKAQRAYEDALQVDP 112 (126)
T ss_dssp CHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 99999999999887653
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=5.9e-07 Score=66.62 Aligned_cols=106 Identities=9% Similarity=-0.053 Sum_probs=93.6
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+......+.+.|++++|...|++.++. .|.+..+|..+..+|.+.|++++|++.|++..+..| +...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 356777888999999999999999999987 677999999999999999999999999999988755 57789999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
|...|++++|...|++..+. .|+......
T Consensus 91 ~~~~~~~~~A~~~~~~al~l--~P~~~~a~~ 119 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV--DPSNEEARE 119 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CcCCHHHHH
Confidence 99999999999999999884 677665433
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=9.3e-07 Score=76.30 Aligned_cols=167 Identities=9% Similarity=-0.111 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C-c------hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R-N------LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~ 174 (415)
..+...+..+...|++++|.+.++...+ + . ...+..+...+...|++++|+..|++..+.....
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------- 148 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------- 148 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-------
Confidence 3444455566666666666666654321 1 0 1123344555566677777777766553210000
Q ss_pred HHhccCCCCccCCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 039757 175 YTRMNRSNGASTEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRG-FNAF----DIRVSNCLIDTYAKCGCIFSALKL 248 (415)
Q Consensus 175 ~~~~~~~~~a~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 248 (415)
.... ...+++.+...+...|++++|...+++..+.. ..+. ...++..+..+|...|++++|...
T Consensus 149 ----------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~ 218 (293)
T 2qfc_A 149 ----------IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp ----------SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence 0001 12355666666777777777777777666210 0121 125788899999999999999999
Q ss_pred HHHhhhhCCC-------hhhHHHHHHHHHccCchHHH-HHHHHHHHh
Q 039757 249 FEDISVERKN-------LVSWTSIISGFAMHGMGKAA-VENFERMQK 287 (415)
Q Consensus 249 ~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A-~~~~~~m~~ 287 (415)
+++.....++ ..+|..+..+|...|++++| ...+++...
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 9987654111 45688889999999999999 777777653
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=3.8e-08 Score=82.81 Aligned_cols=187 Identities=9% Similarity=-0.124 Sum_probs=142.8
Q ss_pred hcCChhHHHHHHhhhhhcCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHhhhhCCCh---------------
Q 039757 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL-------IDTYAKCGCIFSALKLFEDISVERKNL--------------- 259 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~--------------- 259 (415)
..++...|.+.|.++.+. .|.....|..+ ...+...++..++...+.......|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 589999999999999998 68788899888 566666666666666666655532211
Q ss_pred -------hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHh
Q 039757 260 -------VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIAL 332 (415)
Q Consensus 260 -------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (415)
..+-.+...+...|++++|.++|+.+... .|+.. .... +...+.+.+++++|+..|+
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~--~~~~------------~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL--VAWM------------KAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH--HHHH------------HHHHHHHTTCHHHHHHHHT
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH--HHHH------------HHHHHHHcCCHHHHHHHHH
Confidence 12345677888999999999999998764 46554 1111 4446899999999999998
Q ss_pred cCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHccc-C--CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 333 GIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMER-G--NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 333 ~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
..... |+ ...+..+..++...|++++|+..|++...... | .......+..++.+.|+.++|..+|+++...+
T Consensus 160 ~a~~~-~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 160 SAGKW-PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TGGGC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred Hhhcc-CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66554 32 23677888899999999999999999985442 2 33567888999999999999999999998765
Q ss_pred cc
Q 039757 406 AL 407 (415)
Q Consensus 406 ~~ 407 (415)
..
T Consensus 239 P~ 240 (282)
T 4f3v_A 239 PE 240 (282)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=2.1e-07 Score=72.49 Aligned_cols=87 Identities=8% Similarity=-0.150 Sum_probs=53.3
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH--HHHhcCchhh
Q 039757 317 MLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN--ILAGVGRYVD 393 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~ 393 (415)
.+...|++++|...+++.....| +...+..+..++...|++++|...++++.+..|.+...+..+.. .+.+.|++++
T Consensus 56 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 56 AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443332212 44566666777777777788888887777777766666543333 3667788888
Q ss_pred HHHHHHHHhh
Q 039757 394 AERLRRVMDE 403 (415)
Q Consensus 394 A~~~~~~m~~ 403 (415)
|...+++...
T Consensus 136 A~~~~~~~~~ 145 (166)
T 1a17_A 136 AIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHcccchHH
Confidence 8777776543
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=2.8e-06 Score=78.78 Aligned_cols=340 Identities=8% Similarity=-0.065 Sum_probs=193.9
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh-
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADS-PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT- 80 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~- 80 (415)
++.+.++++|..-+.. .|++..|...+....+.++ .+....+|+.... .-|.. |. +...|...+..+..
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~--~vg~d--~~--s~~iW~~Yi~f~~~~ 98 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG--QFENY--WD--SYGLYKEYIEEEGKI 98 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHH--HSTTC--TT--CHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH--HcCCC--cc--cHHHHHHHHHHHHhc
Confidence 4677889999988874 4899999999998888764 4667788888874 33433 32 66777777776542
Q ss_pred ---cCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcc--------------cCC----CchhhHHH
Q 039757 81 ---LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE--------------LPE----RNLVTWNV 139 (415)
Q Consensus 81 ---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------------~~~----~~~~~~~~ 139 (415)
.++.+.+..+|+.++......-...|......- .......+.+++.+ +.. .+...|..
T Consensus 99 ~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~ 177 (493)
T 2uy1_A 99 EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAAR 177 (493)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 356778999999998743221222333332211 11112222222221 110 01112222
Q ss_pred HHHHHHhhC--C-----HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHH
Q 039757 140 MITGLVKWG--E-----LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212 (415)
Q Consensus 140 li~~~~~~g--~-----~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 212 (415)
.+..-...+ - .+.+..+|+++.. . .+.....|...+.-+.+.|+.+.|..+
T Consensus 178 y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~-----------~-----------~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 178 LIDLEMENGMKLGGRPHESRMHFIHNYILD-----------S-----------FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHH-----------H-----------TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCCccCcchhhHHHHHHHHHHHHH-----------c-----------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 222111000 0 1112222222221 0 233456666667777788999999999
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------------CCChhhHHHHHHHHHccCchHHH
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------------RKNLVSWTSIISGFAMHGMGKAA 278 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~~~A 278 (415)
|+..... |.+...+.. |+...+.++. ++.+... +.....|-..+....+.++.+.|
T Consensus 236 ~erAi~~---P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 236 VERGIEM---SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHH---CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhC---CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 9999987 545544432 2222111221 2222111 01124466667766677889999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCCh
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNV 357 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~ 357 (415)
..+|++. .. |. .++...+.. +.+.. ...++.+.|..+|+......|+ ...|...+......|+.
T Consensus 306 R~i~~~A-~~---~~-~~~~v~i~~---------A~lE~-~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 306 RKLFIEL-GN---EG-VGPHVFIYC---------AFIEY-YATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHH-TT---SC-CCHHHHHHH---------HHHHH-HHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHh-hC---CC-CChHHHHHH---------HHHHH-HHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 9999988 32 22 233322110 12222 2234689999998876554343 44566677777788999
Q ss_pred HHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+.|..+|+++ ......|...+..-...|+.+.+..+++++.+
T Consensus 371 ~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999987 23445677777777778999999888888775
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=6.6e-06 Score=71.61 Aligned_cols=240 Identities=8% Similarity=-0.001 Sum_probs=162.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-CCchHHHHHHHHHHcCCCCchhhH
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYVN 106 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~ 106 (415)
++.+-....+.+..++|+++++.+. ...+. +..+|+.--..+...| .+++++++++.+.... +-+..+|
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L---~~nP~------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW 126 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIV---RMNPA------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVW 126 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH---HhCch------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHH
Confidence 4444444455556688999999999 77766 7778888888888888 5999999999999875 4567788
Q ss_pred HHHHHHHHcC-C-ChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHH--------HHHHHHhhCCCCC---hhHHHH
Q 039757 107 TALVNMYVSL-G-FLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELE--------YARSLFEEMPCRN---VVSWTG 170 (415)
Q Consensus 107 ~~li~~~~~~-g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~---~~~~~~ 170 (415)
+..-.++.+. + ++++++++++.+.+ .|..+|+--.-.+.+.|.++ ++++.++++.+.+ ...|+.
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8887777776 7 88999999999987 35567776655555555555 8888888877533 333444
Q ss_pred HHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCH--------
Q 039757 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI-------- 242 (415)
Q Consensus 171 li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------- 242 (415)
....+.+.++... ....++++...+..+... .|.|...|+-+-..+.+.|+.
T Consensus 207 R~~lL~~l~~~~~------------------~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 207 RWYLRVSRPGAET------------------SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp HHHHHTTSTTCCC------------------CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred HHHHHHhcccccc------------------chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 3333333222100 001256777788777776 577888888877777776653
Q ss_pred ------------HHHHHHHHHhhhhC-------CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 243 ------------FSALKLFEDISVER-------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 243 ------------~~A~~~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
....++..++.... ++......|+..|...|+.++|.++++.+.+. ..|-..-|-
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw 340 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYW 340 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHH
Confidence 33444444443322 45667888999999999999999999998643 445444443
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=2e-07 Score=79.99 Aligned_cols=93 Identities=4% Similarity=-0.184 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHH
Q 039757 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGL 144 (415)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~ 144 (415)
...+..+...+...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|+..++...+ | +...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444445555555555555555555554442 22444455555555555555555555555443 2 334455555555
Q ss_pred HhhCCHHHHHHHHhhCC
Q 039757 145 VKWGELEYARSLFEEMP 161 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~ 161 (415)
...|++++|...|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555543
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=8.3e-07 Score=71.73 Aligned_cols=91 Identities=9% Similarity=0.018 Sum_probs=56.5
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCC---Cc-----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--C----CccHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSE---IT-----DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--N----GGDYV 379 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~---~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~ 379 (415)
+...|...|++++|.+.+++.... .+ ....+..+...+...|++++|...+++..+.... + ..++.
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 445555666666665555443222 12 1235666777777788888888888877755422 1 12356
Q ss_pred HHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 380 LMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.++.++...|++++|.+.+++..+.
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 7777788888888888877776553
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=3.6e-06 Score=72.59 Aligned_cols=212 Identities=10% Similarity=0.055 Sum_probs=136.5
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCch---hhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL---VTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 88 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
...+..+..-...|+..+...+...+... ++ .++..-...+. ..+...+..+...|++++|.+++++..+..
T Consensus 31 ~~~~s~~e~g~~~~~~~~l~~i~~~l~~~--~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~ 105 (293)
T 3u3w_A 31 QSEVSRIESGAVYPSMDILQGIAAKLQIP--II---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE 105 (293)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHTCC--TH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcC--HH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Confidence 34455554333467777776666655321 11 22333222222 234445778889999999999999876422
Q ss_pred hhHHHHHHHHHHhccCCCCccCCCch----HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC----HHHHHHHHHHH
Q 039757 165 VVSWTGILDGYTRMNRSNGASTEPSE----ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD----IRVSNCLIDTY 236 (415)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~ 236 (415)
. ..++. ..+..+...+...++++.|...+++..+......+ ..+++.+..+|
T Consensus 106 ~--------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 106 E--------------------YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp C--------------------CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred c--------------------CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 1 11221 12334666677788999999999999874333323 34789999999
Q ss_pred HhcCCHHHHHHHHHHhhhh-------CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHccC
Q 039757 237 AKCGCIFSALKLFEDISVE-------RK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR-VTFLSVLNACSHG 307 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~-------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 307 (415)
...|++++|...|+++... .+ ...+|..+...|.+.|++++|...+++..+.....+. .....
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~-------- 237 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ-------- 237 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH--------
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH--------
Confidence 9999999999999998743 11 2346889999999999999999999987653111111 11111
Q ss_pred CcchHHHHHHhHhcCC-HHHHHHHHhcC
Q 039757 308 GLHYGCLVDMLGRAGR-LEQAEKIALGI 334 (415)
Q Consensus 308 ~~~~~~li~~~~~~g~-~~~A~~~~~~~ 334 (415)
.|..+...|.+.|+ +++|.+.+++.
T Consensus 238 --~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 238 --LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp --HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 13346777888884 58887776543
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=5.2e-07 Score=70.27 Aligned_cols=128 Identities=12% Similarity=0.005 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
....|..+...+...|++++|...|++.. ...+. +..++..+...+...|+++.|...++...+.. +.+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 81 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAI---ELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYI 81 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccH
Confidence 34568888899999999999999999998 55555 78889999999999999999999999998875 4567
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhH--HHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTW--NVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~--~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
..+..+..++...|++++|...|++..+ | +...+ ..++..+.+.|++++|.+.++...
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7888899999999999999999998764 3 34445 344444778899999999988753
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=4.7e-08 Score=79.11 Aligned_cols=166 Identities=8% Similarity=-0.074 Sum_probs=102.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH--------HHHHHH
Q 039757 233 IDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF--------LSVLNA 303 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--------~~ll~~ 303 (415)
+.+....|+++++.+.|+.-.... .....+..+...+...|++++|...|++.... .|+...+ ...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHH
Confidence 334444555666655555433321 23345666667777777777777777777653 2221100 000000
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHH
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 382 (415)
..+..+...|.+.|++++|+..++......| +...+..+..+|...|++++|...|+++.+..|.+..++..+.
T Consensus 89 -----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 89 -----SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 0133477779999999999999987765534 6678899999999999999999999999999999999999999
Q ss_pred HHHHhcCchhhHH-HHHHHHhhhc
Q 039757 383 NILAGVGRYVDAE-RLRRVMDERN 405 (415)
Q Consensus 383 ~~~~~~g~~~~A~-~~~~~m~~~~ 405 (415)
.++...|+..++. ..+..|-..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 164 LCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999887 5666665544
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=5.1e-07 Score=66.32 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
...+..+...+...|++++|.+.|+++....| +..++..+...+...|++++|...++++... .|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~------------ 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DP------------ 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CC------------
Confidence 44555555555555666666655555554422 3444555555555555555555555554432 11
Q ss_pred ccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHH
Q 039757 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 384 (415)
.+..++..+...+...|++++|...++++.+..|.+...+..+..+
T Consensus 75 ----------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 75 ----------------------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp ----------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------------------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 1344555666666667777777777777777666666666666655
Q ss_pred HHhc
Q 039757 385 LAGV 388 (415)
Q Consensus 385 ~~~~ 388 (415)
+...
T Consensus 121 ~~~~ 124 (125)
T 1na0_A 121 KQKQ 124 (125)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=2e-07 Score=71.48 Aligned_cols=94 Identities=15% Similarity=-0.051 Sum_probs=84.5
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
.+...+.+.|++++|...|+......| +...|..+..+|...|++++|+..|+++.+.+|.++..+..++.+|...|++
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 366778999999999999998765534 6778999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcc
Q 039757 392 VDAERLRRVMDERNA 406 (415)
Q Consensus 392 ~~A~~~~~~m~~~~~ 406 (415)
++|...+++..+...
T Consensus 106 ~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 106 AEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc
Confidence 999999999887654
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=7.4e-07 Score=66.40 Aligned_cols=118 Identities=8% Similarity=-0.069 Sum_probs=85.3
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCC
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 100 (415)
...+...|..+...+...|++++|+..|++.. ...+. +...+..+...+...|++++|...++.+.+.. +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~ 81 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-P 81 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-T
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 44666778888888888888888888888887 55444 66777888888888888888888888887764 3
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhC
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWG 148 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g 148 (415)
.+...+..+..++.+.|++++|.+.|++..+ | +...+..+...+.+.|
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 4566777777778888888888888877653 2 3445556666555544
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=7.8e-07 Score=65.31 Aligned_cols=112 Identities=11% Similarity=0.019 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchh
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 104 (415)
...|..+...+...|++++|.+.|+++. ...+. +..++..+...+...|+++.|...++.+.+.. +.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 78 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL---ELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAE 78 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHH
Confidence 5677778888888888888888888887 44434 66778888888888888888888888887764 34566
Q ss_pred hHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHh
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVK 146 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~ 146 (415)
++..+...+...|++++|...|+++.+ | +...+..+...+..
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 777777888888888888888877653 2 34445444444433
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.58 E-value=2.1e-07 Score=66.98 Aligned_cols=99 Identities=12% Similarity=-0.049 Sum_probs=86.7
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHh
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAG 387 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 387 (415)
+..+...+...|++++|...+++.....| +...+..+...+...|++++|...++++.+..+. +...+..++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 44577779999999999999987765533 5678889999999999999999999999999998 88999999999999
Q ss_pred c-CchhhHHHHHHHHhhhccccC
Q 039757 388 V-GRYVDAERLRRVMDERNALKF 409 (415)
Q Consensus 388 ~-g~~~~A~~~~~~m~~~~~~~~ 409 (415)
. |++++|.+.+++..+.+....
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCCHHHHHHHHHHHhhcccCCC
Confidence 9 999999999999988776543
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=3.6e-07 Score=68.16 Aligned_cols=72 Identities=8% Similarity=-0.156 Sum_probs=43.3
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
|...|++++|.+.+++.....| +...+..+..++...|++++|.+.++++.+..+.+...+..+..++...|
T Consensus 60 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 60 YTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 4444444444444443332212 34556666667777777777777777777777766667777777666555
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=7.5e-07 Score=66.03 Aligned_cols=118 Identities=9% Similarity=-0.070 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
.+...|..+...+...|++++|...|++.. ...+. +...+..+...+...|+++.|.+.++...+.. +.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 79 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAI---ELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHH---HcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccC
Confidence 456678888888888999999999999887 44444 67788888888888899999999988887764 345
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCH
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGEL 150 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 150 (415)
...+..+...+...|++++|...|+...+ | +...+..+..++.+.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 66777777888888888888888877653 3 455677777777666654
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=2.9e-07 Score=69.94 Aligned_cols=93 Identities=16% Similarity=-0.113 Sum_probs=84.1
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+.+.|++++|...|+......| +...|..+..++...|++++|+..|+++.+.+|.++..+..++.+|...|+++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 56678899999999999998766545 67788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|...+++..+...
T Consensus 104 ~A~~~~~~al~~~p 117 (142)
T 2xcb_A 104 GAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999887654
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=8.2e-07 Score=71.75 Aligned_cols=157 Identities=8% Similarity=-0.065 Sum_probs=93.1
Q ss_pred cCCChhHHHH---HhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchH
Q 039757 115 SLGFLKDSSK---LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191 (415)
Q Consensus 115 ~~g~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 191 (415)
..|++++|.+ .+..-......++..+...+...|++++|...+++.... +...++ ......
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~-----~~~~~~ 67 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-----------AQKSGD-----HTAEHR 67 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHTTCC-----HHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----------HHHcCC-----cHHHHH
Confidence 3556666666 443322223445666666666666666666666555320 000000 111233
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhc----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCh----
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKR----GFNA-FDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKNL---- 259 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~---- 259 (415)
.+..+...+...|++++|...+.+..+. +..+ .....+..+...+...|++++|.+.+++.... ..+.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4555555666666777766666665543 1011 23456788888999999999999999887654 1222
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.++..+...+...|++++|...+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3467788889999999999999888765
No 146
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.54 E-value=2.1e-07 Score=68.53 Aligned_cols=93 Identities=6% Similarity=-0.198 Sum_probs=82.6
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+.+.|++++|...|+......| +...|..+..++...|++++|+..++++.+.+|.+...+..++.+|...|+++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 56678899999999999998876645 67789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|...+++..+.+.
T Consensus 103 ~A~~~~~~al~~~P 116 (121)
T 1hxi_A 103 AALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999876543
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=4.8e-07 Score=67.11 Aligned_cols=119 Identities=13% Similarity=0.005 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
+...+..+...+...|++++|...|++.....| +...+..+..++...|++++|...+++.... .|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---------- 78 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPA---------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--Ccc----------
Confidence 444555555555555555555555555544422 3444455555555555555555555544432 111
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
+...+..+...+...|++++|...++++.+..|.+...+..+..
T Consensus 79 ------------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 122 (131)
T 2vyi_A 79 ------------------------------------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122 (131)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ------------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 34455566666777777777777777777777666666777777
Q ss_pred HHHhcCch
Q 039757 384 ILAGVGRY 391 (415)
Q Consensus 384 ~~~~~g~~ 391 (415)
++.+.|++
T Consensus 123 ~~~~~~~~ 130 (131)
T 2vyi_A 123 AELKLREA 130 (131)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 77666654
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=4.2e-07 Score=71.92 Aligned_cols=87 Identities=7% Similarity=-0.065 Sum_probs=56.4
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH-HHccCch--
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG-FAMHGMG-- 275 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~-~~~~~~~-- 275 (415)
+...|++++|...++...+. .|.+...+..+..+|...|++++|...|++.....| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 34566777777777777665 455677777777777777777777777777766543 45566666666 6666776
Q ss_pred HHHHHHHHHHHhc
Q 039757 276 KAAVENFERMQKV 288 (415)
Q Consensus 276 ~~A~~~~~~m~~~ 288 (415)
++|...+++....
T Consensus 98 ~~A~~~~~~al~~ 110 (177)
T 2e2e_A 98 AQTRAMIDKALAL 110 (177)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=3.1e-07 Score=68.06 Aligned_cols=94 Identities=11% Similarity=-0.080 Sum_probs=84.8
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (415)
..+...+.+.|++++|...|++.....| +...|..+..++...|++++|+..++++++.+|.+...+..++.++...|+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 3466778999999999999988766534 677899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhc
Q 039757 391 YVDAERLRRVMDERN 405 (415)
Q Consensus 391 ~~~A~~~~~~m~~~~ 405 (415)
+++|...+++..+.+
T Consensus 88 ~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 88 YASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988765
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3.3e-06 Score=62.41 Aligned_cols=97 Identities=10% Similarity=-0.092 Sum_probs=87.4
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+......+...|++++|...|....+. .|.+...+..+..+|.+.|++++|...|++.....| +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345677778889999999999999999987 577899999999999999999999999999988765 57789999999
Q ss_pred HHccCchHHHHHHHHHHHhc
Q 039757 269 FAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~ 288 (415)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998875
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=3e-06 Score=64.73 Aligned_cols=98 Identities=11% Similarity=-0.052 Sum_probs=87.6
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
+...+..+...+...|++++|...|+..... .|.+...+..+..+|...|++++|...|+++....| +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3455667778889999999999999999987 577999999999999999999999999999988755 6778999999
Q ss_pred HHHccCchHHHHHHHHHHHhc
Q 039757 268 GFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~ 288 (415)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998874
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=8.7e-07 Score=70.04 Aligned_cols=122 Identities=10% Similarity=0.024 Sum_probs=75.1
Q ss_pred HhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHH-HHhhCCH--HH
Q 039757 79 VTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITG-LVKWGEL--EY 152 (415)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~g~~--~~ 152 (415)
...|+++.|...++...+.. +.+...+..+...|...|++++|...|+...+ .+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45567777777777776654 34556666677777777777777777766553 244455555555 5555665 66
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHH
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 232 (415)
|...|++.. +. .|.+...+..+
T Consensus 100 A~~~~~~al--------------------------------------------------------~~--~p~~~~~~~~l 121 (177)
T 2e2e_A 100 TRAMIDKAL--------------------------------------------------------AL--DSNEITALMLL 121 (177)
T ss_dssp HHHHHHHHH--------------------------------------------------------HH--CTTCHHHHHHH
T ss_pred HHHHHHHHH--------------------------------------------------------Hh--CCCcHHHHHHH
Confidence 666665553 22 24466667777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCCh
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERKNL 259 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~~~ 259 (415)
..+|...|++++|...|+++....|+.
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 777777777777777777777664443
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=2.2e-06 Score=63.55 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=87.6
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--------hhhH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN--------LVSW 262 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~ 262 (415)
.++..+...+.+.|++++|...|.+.++. .|.+...|..+..+|...|++++|++.|++..+..|+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45677888999999999999999999987 6878999999999999999999999999998775332 1357
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 263 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
..+..++...|++++|+..|++.... .||.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 77888899999999999999998774 56655443
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.47 E-value=8.6e-05 Score=64.63 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=125.5
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCC-ChhHHHHHhcccCC---CchhhHHHHHHHHHhh-C-CHHHH
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG-FLKDSSKLFDELPE---RNLVTWNVMITGLVKW-G-ELEYA 153 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~a 153 (415)
+.+..++|+++++.++... +-+..+|+..-.++...| .+++++++++.+.. .+..+|+.-...+.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3445567888888888875 345566777777777777 48888888888764 3455677666666665 6 77888
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHH
Q 039757 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233 (415)
Q Consensus 154 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 233 (415)
+++++++.+.++. +..+|+--.
T Consensus 145 L~~~~k~L~~dpk----------------------------------------------------------Ny~AW~~R~ 166 (349)
T 3q7a_A 145 IEYIHGSLLPDPK----------------------------------------------------------NYHTWAYLH 166 (349)
T ss_dssp HHHHHHHTSSCTT----------------------------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHhCCC----------------------------------------------------------CHHHHHHHH
Confidence 8888888765432 222222222
Q ss_pred HHHHhcCCH--------HHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCc-------hHHHHHHHHHHHhcCCCCChhhH
Q 039757 234 DTYAKCGCI--------FSALKLFEDISVERK-NLVSWTSIISGFAMHGM-------GKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 234 ~~~~~~g~~--------~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
-++.+.|.+ .++.+.++++.+..| |...|+.....+.+.++ ++++++.++++... .|+..+-
T Consensus 167 wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~Sa 244 (349)
T 3q7a_A 167 WLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSA 244 (349)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHH
Confidence 222222222 266666666665533 55666666666665554 56777777776664 4544443
Q ss_pred HHHHHHHccCCcchHHHHHHhHhcCC--------------------HHHHHHHHhcCCCC-------CcCHHHHHHHHHH
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGRAGR--------------------LEQAEKIALGIPSE-------ITDVVVRRILLGA 350 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~~-------~p~~~~~~~l~~~ 350 (415)
-..+.. .+.+.|+ .........++... .++...+..|+..
T Consensus 245 W~Ylr~-------------Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 311 (349)
T 3q7a_A 245 WNYLRG-------------FLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADS 311 (349)
T ss_dssp HHHHHH-------------HHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHH
T ss_pred HHHHHH-------------HHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHH
Confidence 222222 1222222 12233333333322 2566677788888
Q ss_pred HhhcCChHHHHHHHHHHHH
Q 039757 351 CSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~ 369 (415)
|...|+.++|.++++.+.+
T Consensus 312 ~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 312 FIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHh
Confidence 8888888888888888764
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.45 E-value=5.7e-07 Score=66.81 Aligned_cols=95 Identities=8% Similarity=-0.144 Sum_probs=81.0
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc-------cHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG-------DYVLMY 382 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~ 382 (415)
+..+...+.+.|++++|+..|++.....| +...|..+..+|...|++++|++.+++.++..|.+.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 45588889999999999999988765545 5778999999999999999999999999998876543 567788
Q ss_pred HHHHhcCchhhHHHHHHHHhhhc
Q 039757 383 NILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.++...|++++|.+.+++.....
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Confidence 88899999999999999887644
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=3.3e-06 Score=63.98 Aligned_cols=104 Identities=13% Similarity=-0.047 Sum_probs=89.4
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+..+...+.+.|++++|...|+..... .|.+...|..+..+|...|++++|...|++.....| +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 345666777889999999999999999987 577999999999999999999999999999988855 56788999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
|...|++++|...|++.... .|+...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~--~p~~~~~ 122 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL--AAAQPAH 122 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--HHTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCcch
Confidence 99999999999999998874 3444333
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=7.3e-07 Score=69.54 Aligned_cols=96 Identities=9% Similarity=-0.087 Sum_probs=85.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (415)
..+...+.+.|++++|+..|++.....| +...|..+..+|...|++++|+..++++++..|.+...|..++.+|...|+
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence 3467778999999999999998776545 677899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhccc
Q 039757 391 YVDAERLRRVMDERNAL 407 (415)
Q Consensus 391 ~~~A~~~~~~m~~~~~~ 407 (415)
+++|...+++..+....
T Consensus 95 ~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 95 YKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999998876543
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=4.5e-07 Score=73.27 Aligned_cols=169 Identities=12% Similarity=-0.041 Sum_probs=105.8
Q ss_pred HHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CChhHHHHH-HHHHHhccCCC
Q 039757 109 LVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGI-LDGYTRMNRSN 182 (415)
Q Consensus 109 li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~l-i~~~~~~~~~~ 182 (415)
.+......|+++++.+.++.-.+ .....+..+...+.+.|++++|+..|++... |+...+... +....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------ 83 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK------ 83 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH------
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH------
Confidence 34445556777777777765433 2345677888889999999999999988753 110000000 00000
Q ss_pred CccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-Chhh
Q 039757 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVS 261 (415)
Q Consensus 183 ~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 261 (415)
.......+..+..++...|++++|...++...+. .|.+...+..+..+|...|++++|.+.|++.....| +...
T Consensus 84 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 84 ---KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 0001256777888889999999999999999987 577889999999999999999999999999888755 5667
Q ss_pred HHHHHHHHHccCchHHHH-HHHHHHHhc
Q 039757 262 WTSIISGFAMHGMGKAAV-ENFERMQKV 288 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~-~~~~~m~~~ 288 (415)
+..+..++...++.+++. ..+..|...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 159 RNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888887777777666 555555443
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=2.2e-06 Score=75.43 Aligned_cols=160 Identities=9% Similarity=-0.072 Sum_probs=119.2
Q ss_pred CChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCccCCCchH
Q 039757 117 GFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTEPSEI 191 (415)
Q Consensus 117 g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 191 (415)
+++++|...++...+ | +...|..+...+.+.|++++|+..|++..+ |+..... .............
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---------~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------NEEAQKAQALRLA 197 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------SHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC---------hHHHHHHHHHHHH
Confidence 445555555555443 2 456788999999999999999999998763 2210000 0000000001146
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFA 270 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 270 (415)
.+..+..++.+.|++++|...++..++. .|.+...+..+..+|...|++++|...|+++....| +...+..+..++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 7788888999999999999999999998 577899999999999999999999999999988855 5678999999999
Q ss_pred ccCchHHH-HHHHHHHHh
Q 039757 271 MHGMGKAA-VENFERMQK 287 (415)
Q Consensus 271 ~~~~~~~A-~~~~~~m~~ 287 (415)
..|+.++| ...|+.|..
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999988 456676653
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.7e-06 Score=77.74 Aligned_cols=194 Identities=8% Similarity=-0.157 Sum_probs=140.1
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFD---------------IRVSNCLIDTYAKCGCIFSALKLFEDISVER---KN 258 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~ 258 (415)
...+...|++++|.+.|..+.+......+ ...+..++..|...|++++|.+.+..+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999999876322211 1246789999999999999999999887651 11
Q ss_pred h----hhHHHHHHHHHccCchHHHHHHHHHHHhc----CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 259 L----VSWTSIISGFAMHGMGKAAVENFERMQKV----GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 259 ~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
. .+.+.+-..+...|++++|..++++.... +..+.... .+..+...|...|++++|..+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------------~~~~la~~~~~~g~~~~A~~~ 157 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS-------------LSIKLATLHYQKKQYKDSLAL 157 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH-------------HHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH-------------HHHHHHHHHHHccChHHHHHH
Confidence 1 22344444555678999999999887542 23333221 133478889999999999998
Q ss_pred HhcCCCC------Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--C-----CccHHHHHHHHHhcCchhhHHH
Q 039757 331 ALGIPSE------IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--N-----GGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 331 ~~~~~~~------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-----~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
+++.... .| ...++..+++.|...|++++|..++++.....+. + ...+..++..+...|++++|..
T Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 158 INDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8754321 22 3458888999999999999999999998875532 2 2456677778888999999998
Q ss_pred HHHHHhh
Q 039757 397 LRRVMDE 403 (415)
Q Consensus 397 ~~~~m~~ 403 (415)
.+.+..+
T Consensus 238 ~~~~a~~ 244 (434)
T 4b4t_Q 238 YFFESFE 244 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=8.4e-05 Score=67.72 Aligned_cols=199 Identities=11% Similarity=-0.103 Sum_probs=141.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCc----------------hhhHHHHHHHHHcCCChhHHHHHhcccCC-----
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSH----------------VYVNTALVNMYVSLGFLKDSSKLFDELPE----- 131 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~----- 131 (415)
.-.+.+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+.+
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 345667889999999999999987542211 12366788999999999999999988764
Q ss_pred Cch----hhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChh
Q 039757 132 RNL----VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207 (415)
Q Consensus 132 ~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~ 207 (415)
++. .+.+.+-..+...|++++|.++++..... ..+.++ ......++..+...+...|+++
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~-----~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF-----------AKREKR-----VFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH-----------HHHSSC-----CSSHHHHHHHHHHHHHHHTCHH
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------HHHhCc-----cHHHHHHHHHHHHHHHHccChH
Confidence 111 23344444455678899998888776420 000000 1223456777888889999999
Q ss_pred HHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCC-----hhhHHHHHHHHHccCch
Q 039757 208 NCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKN-----LVSWTSIISGFAMHGMG 275 (415)
Q Consensus 208 ~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~li~~~~~~~~~ 275 (415)
+|..+++.+... +-.+....++..++..|...|++++|..++++.... -++ ...+..+...+...|++
T Consensus 153 ~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y 232 (434)
T 4b4t_Q 153 DSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDY 232 (434)
T ss_dssp HHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhH
Confidence 999998887653 112334678889999999999999999999987654 122 24467777788889999
Q ss_pred HHHHHHHHHHHh
Q 039757 276 KAAVENFERMQK 287 (415)
Q Consensus 276 ~~A~~~~~~m~~ 287 (415)
++|...|.+...
T Consensus 233 ~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 233 KTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=1.1e-06 Score=65.96 Aligned_cols=95 Identities=9% Similarity=-0.143 Sum_probs=84.9
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
.+...+...|++++|...|+......| +...|..+..++...|++++|...++++.+..|.+...+..++.+|...|++
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 93 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhH
Confidence 467778999999999999987765534 5678999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhccc
Q 039757 392 VDAERLRRVMDERNAL 407 (415)
Q Consensus 392 ~~A~~~~~~m~~~~~~ 407 (415)
++|...+++..+....
T Consensus 94 ~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 94 DEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChh
Confidence 9999999998876544
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.40 E-value=9.7e-07 Score=65.51 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=80.2
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCcCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC---CccHHHHHHHHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEITDV----VVRRILLGACSFHGNVEMGERVTRKVLEMERGN---GGDYVLMYNILA 386 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 386 (415)
+...+...|++++|...|+.+....|+. ..+..+..++...|++++|...++++.+..|.+ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 5667889999999999999876653433 477888899999999999999999999999887 667899999999
Q ss_pred hcCchhhHHHHHHHHhhhc
Q 039757 387 GVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~ 405 (415)
..|++++|...++++.+..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 9999999999999998765
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=4.7e-06 Score=59.70 Aligned_cols=98 Identities=7% Similarity=-0.081 Sum_probs=86.7
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---ChhhHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---NLVSWTSI 265 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l 265 (415)
+...+..+...+...|++++|...++...+. .|.+...+..+..++...|++++|.+.|++.....| +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3455677778889999999999999999987 466888999999999999999999999999988755 47789999
Q ss_pred HHHHHcc-CchHHHHHHHHHHHhc
Q 039757 266 ISGFAMH-GMGKAAVENFERMQKV 288 (415)
Q Consensus 266 i~~~~~~-~~~~~A~~~~~~m~~~ 288 (415)
..++... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 9999999 9999999999999876
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.9e-06 Score=65.51 Aligned_cols=95 Identities=14% Similarity=-0.029 Sum_probs=84.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (415)
..+...+...|++++|.+.|++.....|+ ...+..+...+...|++++|+..+++..+..+.+...+..++.+|..
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 111 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH
Confidence 34677789999999999999988776566 57888899999999999999999999999999898999999999999
Q ss_pred cCchhhHHHHHHHHhhhcc
Q 039757 388 VGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 388 ~g~~~~A~~~~~~m~~~~~ 406 (415)
.|++++|...+++..+.+.
T Consensus 112 ~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 112 LGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HTCHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 9999999999999887653
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=1e-05 Score=62.97 Aligned_cols=105 Identities=12% Similarity=-0.045 Sum_probs=92.4
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 266 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 266 (415)
.+...+..+...+...|++++|...|+...+. .|.+...+..+..+|...|++++|...|++.....| +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567788888999999999999999999998 577899999999999999999999999999988865 577899999
Q ss_pred HHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
.+|...|++++|...|++..+. .|+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA--EGNGGS 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HSSSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CCCchH
Confidence 9999999999999999999875 455444
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=6.9e-06 Score=59.38 Aligned_cols=99 Identities=6% Similarity=-0.084 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
++...|..+...+...|++++|...|++.. ...+. +...+..+...+...|+++.|...++...+.. +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 71 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAI---KLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDW 71 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHH---HHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-ccc
Confidence 345677888888888899999999998887 55444 67778888888888888888988888887764 345
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE 131 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 131 (415)
...+..+..++...|++++|...|+...+
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66777778888888888888888877654
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=2.1e-05 Score=56.72 Aligned_cols=103 Identities=11% Similarity=-0.056 Sum_probs=89.3
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+..+...+...|+++.|...++..... .|.+...+..+..++...|++++|...+++.....| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 456677788889999999999999999987 566889999999999999999999999999988755 57789999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
+...|++++|...+++..+. .|+...
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~--~~~~~~ 107 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH--EANNPQ 107 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HHHHhhHHHHHHHHHHHHHc--CCCCHH
Confidence 99999999999999998875 455443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=1.2e-05 Score=60.11 Aligned_cols=100 Identities=12% Similarity=-0.049 Sum_probs=89.6
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
..+...+..+...+...|+++.|...|....+. .|.+...+..+..++...|++++|...|++.....| +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 345677888888999999999999999999987 576899999999999999999999999999988755 57789999
Q ss_pred HHHHHccCchHHHHHHHHHHHhc
Q 039757 266 ISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
..+|...|++++|...|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=5.2e-06 Score=60.91 Aligned_cols=95 Identities=7% Similarity=-0.075 Sum_probs=84.7
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFA 270 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 270 (415)
.+..+...+.+.|++++|...++...+. .|.+...+..+..++...|++++|+..|++.....| +...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455667788999999999999999998 677999999999999999999999999999988866 5778999999999
Q ss_pred ccCchHHHHHHHHHHHhc
Q 039757 271 MHGMGKAAVENFERMQKV 288 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~~ 288 (415)
..|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998874
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=2.7e-06 Score=65.57 Aligned_cols=91 Identities=14% Similarity=0.020 Sum_probs=63.8
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCC---Cc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC------CCccHHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSE---IT----DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG------NGGDYVL 380 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 380 (415)
+...+...|++++|.+.+++.... .+ ....+..+...+...|++++|.+.+++..+.... ....+..
T Consensus 55 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 444455555555555555443322 01 2446777888888999999999999998876432 2356778
Q ss_pred HHHHHHhcCchhhHHHHHHHHhhh
Q 039757 381 MYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 381 l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
+...+...|++++|.+.+++..+.
T Consensus 135 la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 899999999999999999887654
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.29 E-value=2.8e-06 Score=78.19 Aligned_cols=158 Identities=11% Similarity=-0.064 Sum_probs=88.0
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
.+++++|...++..... .|.....+..+...|.+.|++++|...|++.....|+...+ . .+.... .
T Consensus 247 l~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~----------~-~~~~~~-~ 312 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL----------S-EKESKA-S 312 (457)
T ss_dssp EEEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC----------C-HHHHHH-H
T ss_pred hhhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC----------C-hHHHHH-H
Confidence 34455555555544443 23356677777888888888888888888877653432100 0 000000 0
Q ss_pred HHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHH
Q 039757 283 ERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGE 361 (415)
Q Consensus 283 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 361 (415)
..+. .. .|..+...|.+.|++++|+..+++.....| +...|..+..+|...|++++|+
T Consensus 313 ~~~~-------~~--------------~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~ 371 (457)
T 1kt0_A 313 ESFL-------LA--------------AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK 371 (457)
T ss_dssp HHHH-------HH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH-------HH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH
Confidence 0000 00 122244455666666666666655444322 4556666677777777777777
Q ss_pred HHHHHHHHcccCCCccHHHHHHHHHhcCchhhHH
Q 039757 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
..|+++++..|.+..++..+..++.+.|++++|.
T Consensus 372 ~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 372 GDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777776665
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=6.2e-07 Score=65.49 Aligned_cols=86 Identities=15% Similarity=-0.029 Sum_probs=72.4
Q ss_pred hcCCHHHHHHHHhcCCCC---Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHH
Q 039757 320 RAGRLEQAEKIALGIPSE---IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
..|++++|+..|++.... .| +...+..+..+|...|++++|+..++++++..|.++.++..++.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 368889999999887665 24 45588889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 039757 396 RLRRVMDERN 405 (415)
Q Consensus 396 ~~~~~m~~~~ 405 (415)
..+++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999987764
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=1.5e-05 Score=58.73 Aligned_cols=105 Identities=8% Similarity=0.008 Sum_probs=88.8
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-C-------hhh
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-N-------LVS 261 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-------~~~ 261 (415)
...+..+...+...|+++.|...+....+. .|.+...+..+..+|...|++++|...++++....| + ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 345677788889999999999999999987 466889999999999999999999999999877633 2 667
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
+..+..++...|++++|...|++..+. .|+.....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 116 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLK 116 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHH
Confidence 888999999999999999999999885 45544433
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=7.1e-06 Score=62.24 Aligned_cols=63 Identities=11% Similarity=-0.058 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC----hhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
+...+..+...+...|++++|.+.|++.....|+ ...+..+..+|...|++++|...+++..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 4555555555555666666666666555554443 33444455555555555555555555443
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=1.7e-06 Score=64.13 Aligned_cols=96 Identities=14% Similarity=0.006 Sum_probs=82.6
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC-------CccHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN-------GGDYVLMY 382 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~ 382 (415)
+..+...+...|++++|...|++.....| +...+..+...+...|++++|...++++.+..+.+ ..++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 34477778999999999999987765533 66788889999999999999999999999988765 67888999
Q ss_pred HHHHhcCchhhHHHHHHHHhhhcc
Q 039757 383 NILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.++...|++++|.+.+++..+...
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999887643
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.26 E-value=5.2e-06 Score=63.94 Aligned_cols=137 Identities=16% Similarity=0.075 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCC-CCChhhH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTF 297 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~ 297 (415)
..++..+...|...|++++|.+.+++..... ++ ..++..+...+...|++++|...+++.....- .++....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4567778888888889999888888876651 22 13677788888889999999998888765311 1121111
Q ss_pred HHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---Cc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---IT----DVVVRRILLGACSFHGNVEMGERVTRKVLEM 370 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 370 (415)
.. .+..+...+...|++++|.+.+++.... .. ...++..+...+...|++++|.+.+++..+.
T Consensus 89 ~~----------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQ----------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HH----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11 1334777788899999998888765432 11 2346778888899999999999999998775
Q ss_pred cc
Q 039757 371 ER 372 (415)
Q Consensus 371 ~~ 372 (415)
..
T Consensus 159 ~~ 160 (164)
T 3ro3_A 159 SR 160 (164)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=7.5e-06 Score=75.72 Aligned_cols=124 Identities=14% Similarity=0.021 Sum_probs=97.2
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHcc
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMH 272 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~ 272 (415)
..+...+.+.|++++|...+++..+. .|.+..++..+..+|.+.|++++|.+.+++..+..| +...|..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455677899999999999999997 577899999999999999999999999999988755 567899999999999
Q ss_pred CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHh
Q 039757 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIAL 332 (415)
Q Consensus 273 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (415)
|++++|...|++..+. .|+.......+. .+..+.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~--~p~~~~~~~~l~-----------~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKV--KPHDKDAKMKYQ-----------ECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHH--STTCTTHHHHHH-----------HHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHH-----------HHHHHHHHHHHHHHhcccc
Confidence 9999999999999885 455443222111 2233777899999999988
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.00022 Score=61.72 Aligned_cols=247 Identities=10% Similarity=0.009 Sum_probs=165.1
Q ss_pred HHHHHHHHHHh---hcCCChH-HHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC----------CchHHHH
Q 039757 25 TLLFNTLLHFY---SLADSPK-KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY----------PNLGTQL 90 (415)
Q Consensus 25 ~~~~~~li~~~---~~~g~~~-~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~----------~~~a~~~ 90 (415)
+..|..+.... .+.|++. +|+.+++.+. ...+. +..+|+.--..+...+. ++.++.+
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L---~~nP~------~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~ 96 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQIL---GANPD------FATLWNCRREVLQHLETEKSPEESAALVKAELGF 96 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH---TTCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHCch------hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHH
Confidence 44555555433 3466654 8999999999 66655 66667665554444433 5788899
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHcCCC--hhHHHHHhcccCC---CchhhHHHHHHHHHhhCC-HHHHHHHHhhCCC--
Q 039757 91 HAVISKVGFQSHVYVNTALVNMYVSLGF--LKDSSKLFDELPE---RNLVTWNVMITGLVKWGE-LEYARSLFEEMPC-- 162 (415)
Q Consensus 91 ~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~-- 162 (415)
++.+.... +-+..+|+.-..++.+.|+ +++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.++++.+
T Consensus 97 ~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 97 LESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 99988875 4578888888888888884 8999999999885 567788887777788888 5899999998874
Q ss_pred -CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc--
Q 039757 163 -RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC-- 239 (415)
Q Consensus 163 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 239 (415)
.|...|+.....+.+.+....+ ++ ..-...+.++++...+...... .|.|...|+-+-..+.+.
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~---~~--------~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDS---GP--------QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC-----------------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHHhhhcccc---cc--------ccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccC
Confidence 3445555555444443221110 00 0000114567788888888877 577888887665555554
Q ss_pred ---------CCHHHHHHHHHHhhhhCCChhhHHHHHH-----HHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 240 ---------GCIFSALKLFEDISVERKNLVSWTSIIS-----GFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 240 ---------g~~~~A~~~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
+.++++++.++++.+..|+. .|+.+.. .....+..+++...+.++++. .|...-+
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~ 311 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAY 311 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhH
Confidence 45789999999998887764 3433222 222457778889999999874 5655443
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.21 E-value=4.6e-05 Score=56.21 Aligned_cols=100 Identities=11% Similarity=-0.002 Sum_probs=83.3
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC----hhhHHHHH
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI---RVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSII 266 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li 266 (415)
..+...+...|++++|...++.+.+. .|.+. ..+..+..++...|++++|...|+++....|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34556778899999999999999987 34455 68888999999999999999999999887554 56688899
Q ss_pred HHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
.++...|++++|...|+++... .|+....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 112 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ--YPGSDAA 112 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCChHH
Confidence 9999999999999999999885 4665543
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=0.00036 Score=60.41 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=43.8
Q ss_pred HhcCCCc-hHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC----------hhHHHHHhcccCC---CchhhHHHHHHHH
Q 039757 79 VTLSYPN-LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF----------LKDSSKLFDELPE---RNLVTWNVMITGL 144 (415)
Q Consensus 79 ~~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~li~~~ 144 (415)
.+.|.++ +|+++++.+.... +-+..+|+.--..+...+. +++++.+++.+.. .+..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455554 6777777777654 2233445544333332222 4555555555543 2444555555555
Q ss_pred HhhC--CHHHHHHHHhhCCC
Q 039757 145 VKWG--ELEYARSLFEEMPC 162 (415)
Q Consensus 145 ~~~g--~~~~a~~~~~~m~~ 162 (415)
.+.| ++++++++++++.+
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~ 138 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLE 138 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHH
Confidence 5555 35666666666654
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.19 E-value=3.3e-06 Score=78.12 Aligned_cols=123 Identities=9% Similarity=-0.034 Sum_probs=96.8
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CH
Q 039757 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DV 341 (415)
Q Consensus 263 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~ 341 (415)
..+...+.+.|++++|...|++..+. .|+.... +..+...|.+.|++++|++.+++.....| +.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~-------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIY-------------YGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHH-------------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 33445567789999999999998875 5554321 33477779999999999999988766644 56
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHH--HHhcCchhhHHHHHHH
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI--LAGVGRYVDAERLRRV 400 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 400 (415)
..+..+..+|...|++++|++.++++.+..|.+...+..+..+ +.+.|++++|.+.+++
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7899999999999999999999999999999988888888887 8899999999999883
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=4.8e-06 Score=64.67 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=81.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCC------------------Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSE------------------IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~------------------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
......+.+.|++++|+..|+..... .| +...|..+..+|.+.|++++|+..++++++.+|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 34677789999999999998766543 12 235788889999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 373 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+..+|..++.+|...|++++|...+++..+.+.
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999887654
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=4.9e-06 Score=63.26 Aligned_cols=93 Identities=15% Similarity=-0.002 Sum_probs=80.6
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCcC--------H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHc-------ccC
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEITD--------V-----VVRRILLGACSFHGNVEMGERVTRKVLEM-------ERG 373 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~--------~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~ 373 (415)
....+.+.|++++|+..|+......|+ . ..|..+..++.+.|++++|+..+++.++. +|.
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 566688899999999999876654333 2 28899999999999999999999999999 888
Q ss_pred CCccH----HHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 374 NGGDY----VLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 374 ~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
+...| ...+.++...|++++|+..|++..+...
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88899 9999999999999999999999876543
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=0.00025 Score=66.86 Aligned_cols=173 Identities=6% Similarity=-0.080 Sum_probs=136.9
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhhCC-ChhhHHHHHHHHHcc
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC----------IFSALKLFEDISVERK-NLVSWTSIISGFAMH 272 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~ 272 (415)
...++|...++.+... .|.+..+|+.--.++...|+ ++++.+.++++....| +..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3446789999999987 57788888887777777777 9999999999988855 677899888888899
Q ss_pred C--chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcC-CHHHHHHHHhcCCCCCc-CHHHHHHHH
Q 039757 273 G--MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG-RLEQAEKIALGIPSEIT-DVVVRRILL 348 (415)
Q Consensus 273 ~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~l~ 348 (415)
+ +++++++.++++.+...+ +...| +.-...+.+.| .++++++.++++.+..| +...|+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW--------------~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~ 185 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCW--------------DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 185 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHH--------------HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHH--------------HHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHH
Confidence 9 679999999999986322 22222 22344456667 88999999999888745 666787776
Q ss_pred HHHhhc--------------CChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 349 GACSFH--------------GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 349 ~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
..+... +.++++++.+++++..+|.+..+|..+...+.+.|+.++
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 666552 567999999999999999999999999999988888555
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=1.9e-05 Score=70.42 Aligned_cols=87 Identities=7% Similarity=-0.117 Sum_probs=76.1
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
|..+...|.+.|++++|++.+++.....| +...|..+..+|...|++++|++.|+++.+..|.+...+..+..++...+
T Consensus 276 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 44477779999999999999988877645 56789999999999999999999999999999999999999999999999
Q ss_pred chhhHHHH
Q 039757 390 RYVDAERL 397 (415)
Q Consensus 390 ~~~~A~~~ 397 (415)
+.+++.+.
T Consensus 356 ~~~~a~k~ 363 (370)
T 1ihg_A 356 AQKDKEKA 363 (370)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 88887654
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=4.6e-06 Score=73.46 Aligned_cols=155 Identities=9% Similarity=-0.077 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
....+..+...+.+.|++++|...|++.....|+... +...++.+++...+.. ..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~~----------~~-------- 232 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVKN----------PC-------- 232 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHHT----------HH--------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHHH----------HH--------
Confidence 4555666777777778888888888777665443221 2233344443322210 11
Q ss_pred ccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
|..+...|.+.|++++|+..++......| +...|..+..+|...|++++|...|+++.+..|.+..++..+..
T Consensus 233 ------~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 233 ------HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306 (338)
T ss_dssp ------HHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 33477779999999999999987765544 67789999999999999999999999999999988888888887
Q ss_pred HH-HhcCchhhHHHHHHHHhhhccccCC
Q 039757 384 IL-AGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 384 ~~-~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
.. ...+..+++..++++|........|
T Consensus 307 l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 74 4567788889999988776654433
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=1.8e-05 Score=57.59 Aligned_cols=93 Identities=11% Similarity=-0.092 Sum_probs=74.8
Q ss_pred hcCChhHHHHHHhhhhhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHH
Q 039757 202 QNGAVRNCQLIHGYGEKRGF-NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~ 279 (415)
..|++++|...|++..+.+. .|.+..++..+..+|...|++++|.+.|++.....| +...+..+..++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46888999999999998632 255678899999999999999999999999988865 5778999999999999999999
Q ss_pred HHHHHHHhcCCCCChhh
Q 039757 280 ENFERMQKVGLKPNRVT 296 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~ 296 (415)
..|++.... .|+...
T Consensus 82 ~~~~~al~~--~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAE--TSDDET 96 (117)
T ss_dssp HHHHHHHHH--HCCCHH
T ss_pred HHHHHHHHh--CCCcHH
Confidence 999998875 344433
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=8.8e-05 Score=57.35 Aligned_cols=108 Identities=8% Similarity=-0.002 Sum_probs=89.2
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhc--------C--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKR--------G--------FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 253 (415)
...+......+.+.|+++.|...|...+.. . ..|.+..+|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667778888999999999999988875 0 023356789999999999999999999999998
Q ss_pred hhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh-hHHH
Q 039757 254 VERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV-TFLS 299 (415)
Q Consensus 254 ~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ 299 (415)
...| +...|..+..+|...|++++|...|++.... .|+.. ....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~ 136 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAR 136 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 8755 6778999999999999999999999999885 67765 4333
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=3.3e-05 Score=71.06 Aligned_cols=127 Identities=9% Similarity=-0.016 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC---------------chhHHHHHHHHHhcCCCchHHH
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD---------------SFTYSFLIRTCVTLSYPNLGTQ 89 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~---------------~~~~~~l~~~~~~~~~~~~a~~ 89 (415)
...|..+...|.+.|++++|+..|++.. ...+. + ...|..+..++.+.|+++.|+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al---~~~p~------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIV---SWLEM------EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHTT------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH---HHhcc------cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4578888999999999999999999998 43333 3 5788999999999999999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHH-HHHhhCC
Q 039757 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYAR-SLFEEMP 161 (415)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~-~~~~~m~ 161 (415)
.++.+++.. +.+...|..+..+|...|++++|+..|+...+ | +...+..+..++.+.++.+++. ..+..|.
T Consensus 339 ~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 339 CCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998875 45678888899999999999999999998875 3 4567888888999999888776 4556554
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=1.8e-05 Score=72.81 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=99.8
Q ss_pred HHHHccCchHHHHHHHHHHHhc---CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC------
Q 039757 267 SGFAMHGMGKAAVENFERMQKV---GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE------ 337 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------ 337 (415)
..+...|++++|+.++++..+. -+.|+...... +++.|...|...|++++|..++++....
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~----------~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLR----------LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH----------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 3466789999999999887653 23344433333 2556899999999999999988764322
Q ss_pred --CcCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHc-----ccCCC---ccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 338 --ITDV-VVRRILLGACSFHGNVEMGERVTRKVLEM-----ERGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 338 --~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.|+. .+++.|...|...|++++|+.+++++++. |+.++ .+...+..++...|++++|..++.++.+.-.
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544 47899999999999999999999999763 34433 4556788888999999999999999987554
Q ss_pred c
Q 039757 407 L 407 (415)
Q Consensus 407 ~ 407 (415)
+
T Consensus 467 ~ 467 (490)
T 3n71_A 467 N 467 (490)
T ss_dssp T
T ss_pred c
Confidence 3
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=1.3e-05 Score=57.34 Aligned_cols=97 Identities=16% Similarity=0.018 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
++...|..+...+...|++++|+..|++.. ...+. +...+..+..++...|++++|.+.++...+.. |+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~ 70 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLI---TAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--ST 70 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC
Confidence 456678888888888899999999888888 55544 67788888888888888888888888887653 33
Q ss_pred -------hhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 103 -------VYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 103 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
...+..+..++...|+.+.|...|+.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4445556666666677777666666554
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=3.9e-05 Score=70.67 Aligned_cols=130 Identities=12% Similarity=-0.068 Sum_probs=98.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhh-----CCC----hhhHHHHHHHHHccCchHHHHHHHHHHHhc---CCCCChhhHHHHH
Q 039757 234 DTYAKCGCIFSALKLFEDISVE-----RKN----LVSWTSIISGFAMHGMGKAAVENFERMQKV---GLKPNRVTFLSVL 301 (415)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll 301 (415)
..+...|++++|+.++++.... +++ ..+++.|...|...|++++|+.++++.... -+.|+......
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~-- 394 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM-- 394 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH--
Confidence 3466789999999999987665 332 356999999999999999999999987642 23344433333
Q ss_pred HHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--------CcCHH-HHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--------ITDVV-VRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
+++.|...|...|++++|+.++++.... .|+.. +...+..++...+.+++|+.++.++.+...
T Consensus 395 --------~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 395 --------AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666999999999999999988765432 45433 566777788889999999999999987553
Q ss_pred C
Q 039757 373 G 373 (415)
Q Consensus 373 ~ 373 (415)
.
T Consensus 467 ~ 467 (490)
T 3n71_A 467 N 467 (490)
T ss_dssp T
T ss_pred c
Confidence 3
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=2.3e-05 Score=69.02 Aligned_cols=151 Identities=7% Similarity=-0.075 Sum_probs=71.6
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 269 (415)
...+..+...+.+.|+++.|...|....+. .| +... +...|+.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p-~~~~-------~~~~~~~~~~~~~l~--------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MG-DDFM-------FQLYGKYQDMALAVK--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SC-HHHH-------HTCCHHHHHHHHHHH--------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hc-cchh-------hhhcccHHHHHHHHH--------HHHHHHHHHHH
Confidence 345667777888999999999999998886 34 2221 122233333332221 12566677777
Q ss_pred HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHH
Q 039757 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILL 348 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~ 348 (415)
.+.|++++|+..+++..+. .|+.... |..+..+|...|++++|...|++.....|+ ...+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a-------------~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKA-------------LFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 7777777777777777664 3432211 222556677777777777777777665443 33444444
Q ss_pred HH-HhhcCChHHHHHHHHHHHHcccC
Q 039757 349 GA-CSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 349 ~~-~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.. ....+..+.+...|..+....|.
T Consensus 306 ~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 306 ALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 33 23345566777777777766654
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=0.0001 Score=65.57 Aligned_cols=123 Identities=8% Similarity=-0.011 Sum_probs=97.4
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhc--------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKR--------------GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 257 (415)
.+..+...+.+.|++++|...|++.++. ...|.+..+|..+..+|.+.|++++|.+.++++.+..|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4667777889999999999999998871 02455778999999999999999999999999998755
Q ss_pred -ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH
Q 039757 258 -NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK 329 (415)
Q Consensus 258 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (415)
+...|..+..+|...|++++|...|++..+. .|+....... +...+...++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~-------------l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAE-------------LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH-------------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHH-------------HHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999885 5655443332 3444556666666544
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.92 E-value=4.9e-05 Score=53.42 Aligned_cols=65 Identities=18% Similarity=0.098 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
+...+..+...|...|++++|+..|+++++.+|.+...|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678888888999999999999999999999888889999999999999999999999887754
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.92 E-value=1.9e-05 Score=57.15 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 326 QAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 326 ~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
+|+..|++.....| +...+..+...+...|++++|+..++++.+..|.+...+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555444434 56788888888999999999999999999998888888999999999999999999999887764
Q ss_pred c
Q 039757 405 N 405 (415)
Q Consensus 405 ~ 405 (415)
.
T Consensus 83 ~ 83 (115)
T 2kat_A 83 A 83 (115)
T ss_dssp H
T ss_pred c
Confidence 3
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=2.8e-06 Score=61.02 Aligned_cols=90 Identities=10% Similarity=-0.128 Sum_probs=74.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC------CccHHHHHHH
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN------GGDYVLMYNI 384 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~ 384 (415)
..+...+...|++++|.+.|++.....| +...+..+..++...|++++|++.++++++..|.+ ...+..+..+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 87 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELA 87 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 3467778999999999999987765534 67788899999999999999999999999999887 6677788888
Q ss_pred HHhcCchhhHHHHHHHH
Q 039757 385 LAGVGRYVDAERLRRVM 401 (415)
Q Consensus 385 ~~~~g~~~~A~~~~~~m 401 (415)
+...|++++|.+.++++
T Consensus 88 ~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 88 QGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHCCCCCSSSSSSC
T ss_pred HHHHHhHhhhHhHHHHh
Confidence 88888888877665543
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.00057 Score=64.45 Aligned_cols=117 Identities=10% Similarity=0.003 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC----------CchHHHHHHHHHHcCCCCchhhHH
Q 039757 38 ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY----------PNLGTQLHAVISKVGFQSHVYVNT 107 (415)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~ 107 (415)
....++|++.++.+. ...+. +..+|+.--..+...|+ ++++.+.++.+.+.. +-+..+|+
T Consensus 42 ~~~~eeal~~~~~~l---~~nP~------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~ 111 (567)
T 1dce_A 42 GELDESVLELTSQIL---GANPD------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (567)
T ss_dssp TCCSHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCCHHHHHHHHHHH---HHCch------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344578899999999 77766 77788877777777776 889999999998876 45778888
Q ss_pred HHHHHHHcCC--ChhHHHHHhcccCC---CchhhHHHHHHHHHhhC-CHHHHHHHHhhCCCCC
Q 039757 108 ALVNMYVSLG--FLKDSSKLFDELPE---RNLVTWNVMITGLVKWG-ELEYARSLFEEMPCRN 164 (415)
Q Consensus 108 ~li~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~ 164 (415)
.-..++.+.| +++++++.++.+.+ .|..+|+...-.+.+.| .++++++.++++.+.+
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 8888888889 66999999999875 46778888888888888 8899999999888644
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=0.00021 Score=54.28 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=80.7
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhh----
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-------DI-----RVSNCLIDTYAKCGCIFSALKLFEDISVE---- 255 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 255 (415)
.+......+...|++++|...|++.++. .|. +. ..|+.+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4556667788899999999999999987 343 22 38999999999999999999999999887
Q ss_pred ---CCC-hhhH----HHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 256 ---RKN-LVSW----TSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 256 ---~~~-~~~~----~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.|+ ...| .....++...|++++|+..|++..+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 775 4568 89999999999999999999998763
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.76 E-value=5.7e-05 Score=51.67 Aligned_cols=76 Identities=16% Similarity=0.049 Sum_probs=52.4
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
+...+...|++++|...+++.....| +...+..+...+...|++++|...+++..+..|.+...+..+..++.+.|
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 55557777777777777766544323 45567777777777777777777777777777777777777766665543
No 202
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.74 E-value=3.6e-06 Score=74.70 Aligned_cols=312 Identities=10% Similarity=0.040 Sum_probs=206.5
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
-.+.+|+.|..+....+.+.+|++.|-+.. |+..|..++.++.+.|.++.-..++.-.++..- +
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e 115 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--E 115 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS--------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--S
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC--------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--c
Confidence 345679999999999999999988765443 778899999999999999999999887766543 3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC---------------------
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--------------------- 161 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------------------- 161 (415)
+.+=+.|+-+|++.+++.+-++++. .||..-...+..-|...|.++.|.-+|..+.
T Consensus 116 ~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 116 SYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp TTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred cccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 4455679999999999877544333 2666666777778888888888888877764
Q ss_pred ---CCChhHHHHHHHHHHhccCCCCcc-----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHH
Q 039757 162 ---CRNVVSWTGILDGYTRMNRSNGAS-----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233 (415)
Q Consensus 162 ---~~~~~~~~~li~~~~~~~~~~~a~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 233 (415)
..++.||-.+-.+|...+.+.-|. ..........++.-|...|-+++-..+++.... .......+|+-|.
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELa 270 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELA 270 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 146788999999999999888887 222233345677788888999998888888774 3555788899888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhh---C------CChhhHHHHHHHHHccCchHHHHHH-------------HHHHHhcCCC
Q 039757 234 DTYAKCGCIFSALKLFEDISVE---R------KNLVSWTSIISGFAMHGMGKAAVEN-------------FERMQKVGLK 291 (415)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~---~------~~~~~~~~li~~~~~~~~~~~A~~~-------------~~~m~~~g~~ 291 (415)
-.|++- ++++..+-++.--.. + .....|.-++-.|..-.+++.|... |.+...+ .
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--V 347 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--V 347 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--C
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--c
Confidence 888876 344444444332221 0 2345577888888877777765422 1111111 3
Q ss_pred CChhhHHHHHHHHccCCc-chHHH-------------HHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCCh
Q 039757 292 PNRVTFLSVLNACSHGGL-HYGCL-------------VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357 (415)
Q Consensus 292 p~~~~~~~ll~~~~~~~~-~~~~l-------------i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 357 (415)
++...|-..|.-|..... ..+-| ++.+.+.|++.-....+...... .+...=.++-..|....|+
T Consensus 348 aN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~-N~~aVNeAln~L~IEEEDy 426 (624)
T 3lvg_A 348 ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH-NNKSVNESLNNLFITEEDY 426 (624)
T ss_dssp SCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCS-CCHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHh-hHHHHHHHHHHHHhhhhhH
Confidence 444555555554444333 22333 44444455544444444444443 3334445555666666666
Q ss_pred HH
Q 039757 358 EM 359 (415)
Q Consensus 358 ~~ 359 (415)
+.
T Consensus 427 ~~ 428 (624)
T 3lvg_A 427 QA 428 (624)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=0.00026 Score=50.95 Aligned_cols=79 Identities=14% Similarity=-0.008 Sum_probs=68.2
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
.+...|+...+. .|.+...+..+..+|...|++++|...|++.....| +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466777777776 577899999999999999999999999999988755 56789999999999999999999999987
Q ss_pred hc
Q 039757 287 KV 288 (415)
Q Consensus 287 ~~ 288 (415)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.69 E-value=0.00011 Score=55.62 Aligned_cols=100 Identities=12% Similarity=0.021 Sum_probs=84.4
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI----------FSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
..+.+.+++|...++...+. .|.+...|..+..++...+++ ++|+..|++..+..| +...|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34667789999999999988 688999999999999988765 599999999988866 56789999999
Q ss_pred HHccC-----------chHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 269 FAMHG-----------MGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 269 ~~~~~-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
|...| ++++|.+.|++..+. .|+...|...+..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 98874 899999999999984 8988887765544
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.65 E-value=2.6e-05 Score=59.18 Aligned_cols=89 Identities=10% Similarity=-0.050 Sum_probs=74.6
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCCh----------HHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNV----------EMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
..+.+.+++|.+.++......| +...|..+..++...+++ ++|+..|+++++.+|.+..+|..++.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3456678899998887765545 677888888888887764 59999999999999999999999999999
Q ss_pred hcC-----------chhhHHHHHHHHhhhcc
Q 039757 387 GVG-----------RYVDAERLRRVMDERNA 406 (415)
Q Consensus 387 ~~g-----------~~~~A~~~~~~m~~~~~ 406 (415)
..| ++++|.+.|++..+.+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 875 89999999999887654
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.61 E-value=0.0004 Score=48.57 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.|.+...+..+..+|...|++++|.+.|+++.+..| +...|..+..+|...|++++|...|++..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355777888888888888888888888888877755 466788888888888888888888888765
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.61 E-value=0.0005 Score=46.76 Aligned_cols=82 Identities=9% Similarity=-0.016 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
+...|..+...+...|++++|+..|++.. ...+. +...+..+...+...|++++|...+++..+.. +.+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~---~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~ 77 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKAL---ELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNA 77 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCH
Confidence 45677778888888888888888888887 55444 66778888888888888888888888887764 3345
Q ss_pred hhHHHHHHHHHc
Q 039757 104 YVNTALVNMYVS 115 (415)
Q Consensus 104 ~~~~~li~~~~~ 115 (415)
..+..+..++.+
T Consensus 78 ~~~~~l~~~~~~ 89 (91)
T 1na3_A 78 EAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 556555555543
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.60 E-value=0.00033 Score=48.25 Aligned_cols=69 Identities=12% Similarity=-0.012 Sum_probs=60.5
Q ss_pred cCHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 339 TDVVVRRILLGACSFHGN---VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 339 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
++...+..+..++...++ .++|..++++.++.+|.+..+...++..+.+.|++++|...|+++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 366778888888765555 799999999999999999999999999999999999999999999987765
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.0012 Score=49.39 Aligned_cols=114 Identities=7% Similarity=-0.102 Sum_probs=92.3
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 351 (415)
.+++++|...|++..+.| .|+.. |...|...+.+++|.+.|+...+. .+...+..|...|
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~------------------lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y 67 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC------------------LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH------------------HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh------------------HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 347889999999998876 33332 122366677888899999877665 5778888888888
Q ss_pred hh----cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh----cCchhhHHHHHHHHhhhccc
Q 039757 352 SF----HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG----VGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 352 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 407 (415)
.. .+++++|.++|++..+. .++..+..|...|.. .+++++|.+++++..+.|..
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 87 88999999999999886 467788999999998 89999999999999887754
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.47 E-value=0.00076 Score=50.46 Aligned_cols=113 Identities=12% Similarity=-0.061 Sum_probs=90.1
Q ss_pred hCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH
Q 039757 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 226 (415)
.+++++|++.|++..+.+ .+.. . +...+...+.+++|...|+...+.| ++
T Consensus 8 ~~d~~~A~~~~~~aa~~g----------------------~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g----~~ 57 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN----------------------EMFG--C--LSLVSNSQINKQKLFQYLSKACELN----SG 57 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT----------------------CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT----CH
T ss_pred ccCHHHHHHHHHHHHcCC----------------------CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC----CH
Confidence 346778888887765322 1122 2 5556667778888999999999885 78
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc----cCchHHHHHHHHHHHhcCC
Q 039757 227 RVSNCLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAM----HGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 227 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~ 290 (415)
..+..|..+|.. .+++++|.++|++..+. .+...+..|...|.. .+++++|..+|++..+.|.
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888999999998 88999999999998875 577788889999988 8999999999999988753
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.00019 Score=50.06 Aligned_cols=84 Identities=10% Similarity=-0.042 Sum_probs=66.1
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHH-HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVV-VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
....+.+.|++++|.+.|+......| +.. .+..+..++...|++++|++.|+++.+.+|.+...+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45567889999999999988766545 556 88889999999999999999999999999887766632 566
Q ss_pred hhHHHHHHHHhhhc
Q 039757 392 VDAERLRRVMDERN 405 (415)
Q Consensus 392 ~~A~~~~~~m~~~~ 405 (415)
.++...+++....+
T Consensus 78 ~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 78 MDILNFYNKDMYNQ 91 (99)
T ss_dssp HHHHHHHCCTTHHH
T ss_pred HHHHHHHHHHhccC
Confidence 67777776555433
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.24 E-value=0.02 Score=49.93 Aligned_cols=77 Identities=9% Similarity=-0.003 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
..|.++.+|..+...+...|++++|...++++....|+...|..+...+...|++++|...|++.... .|...||..
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 34668999999988888889999999999999998888878888888999999999999999998874 788888764
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.15 E-value=0.0011 Score=45.96 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=55.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCCCc-cHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGNGG-DYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
....+...|++++|++.++++.+..|.+.. .+..++.+|...|++++|...+++..+.+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 455678899999999999999999999888 9999999999999999999999999876543
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.15 E-value=0.025 Score=55.86 Aligned_cols=127 Identities=9% Similarity=-0.045 Sum_probs=84.2
Q ss_pred HHcCCChhHHHH-HhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchH
Q 039757 113 YVSLGFLKDSSK-LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191 (415)
Q Consensus 113 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 191 (415)
....+++++|.+ ++..+. +......++..+.+.|.+++|.++.+.- .
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~---~--------------------------- 656 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ---D--------------------------- 656 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH---H---------------------------
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc---c---------------------------
Confidence 345677777777 554443 0112266666677777777777655321 0
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 271 (415)
.-.......|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|..
T Consensus 657 ---~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~ 719 (814)
T 3mkq_A 657 ---QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSS 719 (814)
T ss_dssp ---HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHH
T ss_pred ---hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHH
Confidence 0122235678888888876543 2778999999999999999999999998866 5566666777
Q ss_pred cCchHHHHHHHHHHHhc
Q 039757 272 HGMGKAAVENFERMQKV 288 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~ 288 (415)
.|+.+....+-+.....
T Consensus 720 ~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 720 FNNKEGLVTLAKDAETT 736 (814)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 77777766666555554
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.14 E-value=0.039 Score=39.90 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=94.1
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHH
Q 039757 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315 (415)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li 315 (415)
..-.|..++..++..+.... .+..-||-+|.-....-+-+-..++++..-+ ..|.
T Consensus 17 ~ildG~v~qGveii~k~~~s-sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi--------------------- 71 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS-STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL--------------------- 71 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG---------------------
T ss_pred HHHhhhHHHHHHHHHHHcCC-CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc---------------------
Confidence 34467778888888777663 4555567677666666666666666665533 2232
Q ss_pred HHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHH
Q 039757 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
..+|++......+-.+-. +......-+..+...|+-+.-.++...+....+++++....+..+|.+.|+..+|.
T Consensus 72 ---s~C~NlKrVi~C~~~~n~---~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 ---DKCQNLKSVVECGVINNT---LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp ---GGCSCTHHHHHHHHHTTC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---HhhhcHHHHHHHHHHhcc---hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHH
Confidence 345566666555544443 44556666777778888888888888766666667778888888888888888888
Q ss_pred HHHHHHhhhccc
Q 039757 396 RLRRVMDERNAL 407 (415)
Q Consensus 396 ~~~~~m~~~~~~ 407 (415)
+++.+..+.|++
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 888888887764
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.00031 Score=63.58 Aligned_cols=85 Identities=8% Similarity=0.035 Sum_probs=66.7
Q ss_pred hcCCHHHHHHHHhcCCC-------C-CcCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHcc-----cCC---CccHHHHH
Q 039757 320 RAGRLEQAEKIALGIPS-------E-ITDV-VVRRILLGACSFHGNVEMGERVTRKVLEME-----RGN---GGDYVLMY 382 (415)
Q Consensus 320 ~~g~~~~A~~~~~~~~~-------~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~---~~~~~~l~ 382 (415)
..|++++|+.++++... . .|+. .+++.|..+|...|++++|+.+++++++.. +.+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35677888777754322 1 4543 489999999999999999999999998643 333 35788999
Q ss_pred HHHHhcCchhhHHHHHHHHhhh
Q 039757 383 NILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..|...|++++|..++++..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.10 E-value=0.00067 Score=61.47 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=70.6
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCC--------CcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcc-----cCC---Ccc
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSE--------ITD-VVVRRILLGACSFHGNVEMGERVTRKVLEME-----RGN---GGD 377 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~---~~~ 377 (415)
+..+.+.|++++|+.++++.... .|+ ..+++.+..+|...|++++|+.+++++++.. +.+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34466789999999988654322 332 3488999999999999999999999988643 333 356
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 378 YVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 378 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
++.|+..|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998765
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.06 E-value=0.004 Score=52.03 Aligned_cols=90 Identities=8% Similarity=-0.038 Sum_probs=75.2
Q ss_pred CHHHHHHHHhcCCCCCcC---HHHHHHHHHHHhh-----cCChHHHHHHHHHHHHcccC-CCccHHHHHHHHHhc-Cchh
Q 039757 323 RLEQAEKIALGIPSEITD---VVVRRILLGACSF-----HGNVEMGERVTRKVLEMERG-NGGDYVLMYNILAGV-GRYV 392 (415)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~ 392 (415)
....|...+++..+..|+ -..|..|...|.. .|+.++|.+.|++.++.+|. +..++..+.+.+++. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 345667777766655455 4588888888888 49999999999999999997 599999999999985 9999
Q ss_pred hHHHHHHHHhhhccccCCCC
Q 039757 393 DAERLRRVMDERNALKFPGR 412 (415)
Q Consensus 393 ~A~~~~~~m~~~~~~~~~~~ 412 (415)
+|.+.+++..+......|++
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHHcCCCCCCCCh
Confidence 99999999999888766765
No 219
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.01 E-value=0.16 Score=47.95 Aligned_cols=142 Identities=6% Similarity=-0.051 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC-CCCchh
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVY 104 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~ 104 (415)
..|.....++ +.|++..+..+...+. ...+. .-..|..+.... +.. ...++-..+.+.. .+....
T Consensus 8 ~~~~~a~~a~-~~~~~~~~~~l~~~l~---~~pL~------~yl~y~~l~~~l---~~~-~~~ev~~Fl~~~~~~p~~~~ 73 (618)
T 1qsa_A 8 SRYAQIKQAW-DNRQMDVVEQMMPGLK---DYPLY------PYLEYRQITDDL---MNQ-PAVTVTNFVRANPTLPPART 73 (618)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHSGGGT---TSTTH------HHHHHHHHHHTG---GGC-CHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHhhc---CCCcH------HHHHHHHHHhCc---ccC-CHHHHHHHHHHCCCChhHHH
Confidence 3455555544 4688887777755553 21111 112333332221 211 2235555554442 233344
Q ss_pred hHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhccCC
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGILDGYTRMNRS 181 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~ 181 (415)
.-+.-+..+.+.+++...+.++.. ...+...-.....+....|+-.+|....+.+= ......+..++..+.+.|..
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCC
Confidence 455667778889999999998887 33344444456667778888766655444432 23456788888888877754
Q ss_pred C
Q 039757 182 N 182 (415)
Q Consensus 182 ~ 182 (415)
.
T Consensus 153 t 153 (618)
T 1qsa_A 153 D 153 (618)
T ss_dssp C
T ss_pred C
Confidence 3
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.00 E-value=0.012 Score=58.10 Aligned_cols=102 Identities=10% Similarity=0.110 Sum_probs=73.3
Q ss_pred HHhhcCCChHHHHH-HHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 33 HFYSLADSPKKAFL-LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 33 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
......+++++|.+ ++..+ | +......++..+.+.|.++.|.++.+. |. .-..
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-----------~---~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~ 660 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-----------E---GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFE 660 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-----------C---CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHH
T ss_pred hHHHHhCCHHHHHHHHHhcC-----------C---chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hhee
Confidence 33445788888876 44221 1 234447777888888888887766531 11 1133
Q ss_pred HHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
.....|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++..
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 4567899999999988774 567899999999999999999999999864
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.92 E-value=6.1e-06 Score=73.28 Aligned_cols=257 Identities=11% Similarity=0.026 Sum_probs=169.3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccC
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~ 180 (415)
+.+|..|..+....+++.+|++-|-+. .|+..|..+|....+.|.+++-++.+...++ .+...-+.|+.+|.+.++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 445777777777777777776555333 4556677888888888888888888776663 455556678888888777
Q ss_pred CCCcc---CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 039757 181 SNGAS---TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257 (415)
Q Consensus 181 ~~~a~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 257 (415)
..+-. ..|+..-...+..-|...|.++.|.-+|..+..- .-|..++.+.|++..|.+.-++. .
T Consensus 132 L~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~----------akLAstLV~L~~yq~AVdaArKA----n 197 (624)
T 3lvg_A 132 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF----------GRLASTLVHLGEYQAAVDGARKA----N 197 (624)
T ss_dssp SSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC----------TTTSSSSSSCSGGGSSTTTTTTC----C
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH----------HHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 66544 5566666677777788888888887777655433 23455566777777766554433 5
Q ss_pred ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 258 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
++.||..+-.+|...+++.-|.-.--.++- .||... .++..|...|.+++-+.+++.-...
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---hadeL~----------------elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADELE----------------ELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSCCS----------------GGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHHHH----------------HHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 677888888888888887766544433332 233321 2566688899999988888766544
Q ss_pred -CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHH-cccC-------CCccHHHHHHHHHhcCchhhHH
Q 039757 338 -ITDVVVRRILLGACSFHGNVEMGERVTRKVLE-MERG-------NGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 338 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
+.....|+-|.-.|++- ++++.++.++.... .+.| ....|..++-.|..-..|+.|.
T Consensus 259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 45677888888777766 56666665554322 1111 3456666666676666666554
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.91 E-value=0.0025 Score=57.70 Aligned_cols=86 Identities=9% Similarity=-0.014 Sum_probs=69.1
Q ss_pred hcCChhHHHHHHhhhhhc-----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CC---C-hhhHHHHH
Q 039757 202 QNGAVRNCQLIHGYGEKR-----GFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RK---N-LVSWTSII 266 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~---~-~~~~~~li 266 (415)
..|++++|+.++++.++. |-. |....+++.|..+|...|++++|..++++.... ++ + ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467889999999887753 111 223567899999999999999999999998765 33 3 35699999
Q ss_pred HHHHccCchHHHHHHHHHHHh
Q 039757 267 SGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~ 287 (415)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.81 E-value=0.0052 Score=55.66 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=73.7
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CC---C-h
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRG---FNA---FDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RK---N-L 259 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~---~-~ 259 (415)
..+..+.+.|++++|+.++++..+.. ..+ ....+++.|...|...|++++|+.+++++... ++ + .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33455667899999999999887542 112 23567889999999999999999999988765 33 2 3
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5699999999999999999999998754
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.81 E-value=0.0091 Score=52.02 Aligned_cols=138 Identities=7% Similarity=-0.045 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHc----cC----chHHHHHHHHHHHhc
Q 039757 223 AFDIRVSNCLIDTYA--KCG---CIFSALKLFEDISVERKN-LVSWTSIISGFAM----HG----MGKAAVENFERMQKV 288 (415)
Q Consensus 223 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~----~~----~~~~A~~~~~~m~~~ 288 (415)
|.+...|...+++.. ..+ +..+|..+|++..+..|+ ...|..+..+|.. .+ ........++.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 446666666665433 223 346777777777776554 3344443333321 10 111111122222111
Q ss_pred CC-CCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 289 GL-KPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 289 g~-~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
.. ..+...|.. +...+...|++++|...+++.....|+...|..+...+...|++++|.+.++++
T Consensus 271 ~~~~~~a~~~~a--------------lal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 271 PELNNLSIIYQI--------------KAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp GGGTTCHHHHHH--------------HHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCcCHHHHHH--------------HHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 223333332 333344568888888887766655567777778888888888888888888888
Q ss_pred HHcccCC
Q 039757 368 LEMERGN 374 (415)
Q Consensus 368 ~~~~~~~ 374 (415)
...+|..
T Consensus 337 lrL~P~~ 343 (372)
T 3ly7_A 337 FNLRPGA 343 (372)
T ss_dssp HHHSCSH
T ss_pred HhcCCCc
Confidence 8877754
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.71 E-value=0.023 Score=38.76 Aligned_cols=66 Identities=11% Similarity=-0.072 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 223 AFDIRVSNCLIDTYAKCGC---IFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
|.++..+..+..++...++ .++|..+|++.....| ++.....+...+.+.|++++|...|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3355555555555543333 5666666666665544 3455555566666666666666666666654
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.45 E-value=0.0044 Score=46.41 Aligned_cols=83 Identities=10% Similarity=-0.050 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcc-c-CCCccHHHHHHHHHhcCchhhHHHH
Q 039757 324 LEQAEKIALGIPSE-ITDVVVRRILLGACSFHG---NVEMGERVTRKVLEME-R-GNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 324 ~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
+..+.+-|.+.... .++..+...+..++++.+ +.++++.+++...+.+ | .+...+..|..+|.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34445555433222 467788888888899888 6679999999999987 4 2577888899999999999999999
Q ss_pred HHHHhhhcc
Q 039757 398 RRVMDERNA 406 (415)
Q Consensus 398 ~~~m~~~~~ 406 (415)
++.+.+...
T Consensus 94 ~~~lL~ieP 102 (152)
T 1pc2_A 94 VRGLLQTEP 102 (152)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhcCC
Confidence 998876543
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.28 Score=37.70 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=84.2
Q ss_pred HHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCch
Q 039757 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190 (415)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 190 (415)
+.....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+...
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------------------- 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------------------- 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------------------
Confidence 4456788888888887776 4667899999999999999999999988864
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~ 270 (415)
+..+.-.|.-.|+.++...+-+.....| -++....++...|+++++.++|.+.... .--.....
T Consensus 63 --~~~L~~Ly~~tg~~e~L~kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~r~-------~eA~~~A~ 126 (177)
T 3mkq_B 63 --FDKLSFLYLVTGDVNKLSKMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGGSL-------PLAYAVAK 126 (177)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTTCH-------HHHHHHHH
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCCCh-------HHHHHHHH
Confidence 2233334444566655555544444443 1344555677788999999988765541 11111122
Q ss_pred ccCchHHHHHHHHHH
Q 039757 271 MHGMGKAAVENFERM 285 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m 285 (415)
..|-.+.|.++.+++
T Consensus 127 t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 127 ANGDEAAASAFLEQA 141 (177)
T ss_dssp HTTCHHHHHHHHHHT
T ss_pred HcCcHHHHHHHHHHh
Confidence 256667777777665
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.22 E-value=0.089 Score=44.02 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=76.4
Q ss_pred ChhHHHHHHhhhhhcCCCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhhCC--ChhhHHHHHHHHHcc-Cc
Q 039757 205 AVRNCQLIHGYGEKRGFNAF--DIRVSNCLIDTYAKC-----GCIFSALKLFEDISVERK--NLVSWTSIISGFAMH-GM 274 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~-~~ 274 (415)
....|...+++.++. .|. +...|..|...|.+. |+.++|.+.|++.....| +..++......++.. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 456777788888887 564 567899999999995 999999999999999877 378888899999885 99
Q ss_pred hHHHHHHHHHHHhcCCC--CChhhHHH
Q 039757 275 GKAAVENFERMQKVGLK--PNRVTFLS 299 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g~~--p~~~~~~~ 299 (415)
.+++...+++....... |+....+.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 99999999999997666 66554443
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.01 E-value=0.072 Score=39.85 Aligned_cols=94 Identities=9% Similarity=-0.030 Sum_probs=71.5
Q ss_pred ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhhC-C--ChhhHHHHHHHHHccCchHHH
Q 039757 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG---CIFSALKLFEDISVER-K--NLVSWTSIISGFAMHGMGKAA 278 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~A 278 (415)
....+++-|....+.+ +.+..+...+..++++++ +.++++.+|+++.+.. | +...+-.|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 4456666777666654 348888888999999988 6669999999988875 5 345566677788999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHH
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLN 302 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~ 302 (415)
.+.++.+.+. .|+..--..+..
T Consensus 91 ~~y~~~lL~i--eP~n~QA~~Lk~ 112 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHH
Confidence 9999999984 787665554433
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.88 E-value=0.03 Score=39.17 Aligned_cols=69 Identities=17% Similarity=0.081 Sum_probs=50.2
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCC--------CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHH
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSE--------ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 381 (415)
.+...+.+.|+++.|...|+..... .+....+..|..++.+.|+++.|...++++.+..|.+..+...+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 4677788888888888887654432 12455777888888888888888888888888887766554433
No 231
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.67 Score=42.03 Aligned_cols=194 Identities=10% Similarity=0.022 Sum_probs=118.6
Q ss_pred CCCchHHHHHHHHHHc-----CCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCc---hhhHHHHHHHHHhhCCHHHH
Q 039757 82 SYPNLGTQLHAVISKV-----GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN---LVTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a 153 (415)
|+++.|.+.+-.+.+. ...-.......++..|...|+++...+.+..+.+.. ...-..++. .+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~---------~~ 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQ---------KV 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHH---------HH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHH---------HH
Confidence 5667777766555432 223345667778888999999988877665554321 112222222 23
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC---chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC----H
Q 039757 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP---SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD----I 226 (415)
Q Consensus 154 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 226 (415)
...+.....++..+...++..... ..+..... .......+...+...|++.+|..++..+...-....+ .
T Consensus 101 ~~~l~~~~~~d~~~~~~~i~~l~~---vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kv 177 (445)
T 4b4t_P 101 MEYLKSSKSLDLNTRISVIETIRV---VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKI 177 (445)
T ss_dssp HHHHHHHCTTHHHHHHHHHHCCSS---SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 344444444444444333332211 11111111 2233456777888999999999999988754221212 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhh----CCCh----hhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVE----RKNL----VSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
..+..-++.|...+++.+|..+++++... .++. ..|...+..+...+++.+|...|.+.-.
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56677788999999999999999987543 2222 3467778888889999999888877754
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.49 E-value=0.078 Score=36.95 Aligned_cols=70 Identities=7% Similarity=-0.053 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--------CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVER--------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
+..-+..|...+.+.|+++.|...|+...... +....+..|..+|.+.|++++|...+++..+. .|+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 34445556666666677777777666655431 12345666667777777777777777766653 555433
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.6 Score=45.07 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=43.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
..-|...|+++.|+++.++.....|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3345667888888888888888888888888888888888888888888887774
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.77 Score=35.26 Aligned_cols=126 Identities=10% Similarity=-0.055 Sum_probs=78.2
Q ss_pred hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHH
Q 039757 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 280 (415)
...|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|.-.|+.++..+
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHHH
Confidence 4577888888776654 1677888888888888888888888887765 5666666777777766655
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHH
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 360 (415)
+-+.....| -++. -...+...|+++++.++|.+.... |.... + ....|-.+.|
T Consensus 82 la~iA~~~g------~~n~--------------af~~~l~lGdv~~~i~lL~~~~r~-~eA~~---~---A~t~g~~~~a 134 (177)
T 3mkq_B 82 MQNIAQTRE------DFGS--------------MLLNTFYNNSTKERSSIFAEGGSL-PLAYA---V---AKANGDEAAA 134 (177)
T ss_dssp HHHHHHHTT------CHHH--------------HHHHHHHHTCHHHHHHHHHHTTCH-HHHHH---H---HHHTTCHHHH
T ss_pred HHHHHHHCc------cHHH--------------HHHHHHHcCCHHHHHHHHHHCCCh-HHHHH---H---HHHcCcHHHH
Confidence 544444432 1111 223356678888888887666543 21111 1 1124455666
Q ss_pred HHHHHHH
Q 039757 361 ERVTRKV 367 (415)
Q Consensus 361 ~~~~~~~ 367 (415)
.++.+.+
T Consensus 135 ~~~~~~~ 141 (177)
T 3mkq_B 135 SAFLEQA 141 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666554
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.04 E-value=2.4 Score=40.08 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=26.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
+....+.|+++.|...|+.|.....+ ..-.-=+..++...|+.++|..+|+.+.
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33344456666666666655443111 1112223334455566666666666554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.07 E-value=0.42 Score=34.36 Aligned_cols=63 Identities=13% Similarity=-0.088 Sum_probs=41.2
Q ss_pred HHhHhcCCHHH---HHHHHhcCCCCC-c--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccH
Q 039757 316 DMLGRAGRLEQ---AEKIALGIPSEI-T--DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378 (415)
Q Consensus 316 ~~~~~~g~~~~---A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 378 (415)
.++.+...... ++.+++++.... | .....-.|.-++.+.|++++|.++++.+++..|.+..+.
T Consensus 43 w~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 43 WCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 33555554444 677777666552 4 222444566678888888888888888888888765443
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.03 E-value=3.5 Score=40.86 Aligned_cols=276 Identities=10% Similarity=0.020 Sum_probs=148.6
Q ss_pred HHHHHHHHhcCCCc-hHHHHH-HHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----Cchh--hHHHHHHH
Q 039757 72 SFLIRTCVTLSYPN-LGTQLH-AVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLV--TWNVMITG 143 (415)
Q Consensus 72 ~~l~~~~~~~~~~~-~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~li~~ 143 (415)
.++..++...|--. ...... +++-+. .+....-...--+....|+.++++.+++.... .+.. .-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 45677888888443 323322 333332 23333333333557788999999999988664 2222 22334444
Q ss_pred HHhhCCHHHHHHHHhhCCC-CC----------hhHHHHHHHHHHhccCCCC-cc-------CCCch----HHHHhHHHHH
Q 039757 144 LVKWGELEYARSLFEEMPC-RN----------VVSWTGILDGYTRMNRSNG-AS-------TEPSE----ITILAVLPAI 200 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~-~~----------~~~~~~li~~~~~~~~~~~-a~-------~~~~~----~~~~~ll~~~ 200 (415)
.+..|..+++..++..... ++ +..-.++.-++.-.|.-++ +. ...+. ..-..+.-.+
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 5566666677776665442 22 1111222222322332221 11 11111 1111223334
Q ss_pred hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhhhhCCChhh-HH---HHHHHHHccCc
Q 039757 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID--TYAKCGCIFSALKLFEDISVERKNLVS-WT---SIISGFAMHGM 274 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~---~li~~~~~~~~ 274 (415)
.-.|+.+....++..+.+.. +..+...+.- ++...|+.+.+..+.+.+... .+... |. ++..+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~~----~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ----HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 55677788888888776542 2333333443 444678888888888887764 33322 33 34456778889
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhh
Q 039757 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSF 353 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~ 353 (415)
......++..+... ++...-...+ +.-++...|+.+.+.++++.+... .|.+..-..+.-+...
T Consensus 576 ~~aIq~LL~~~~~d---~~d~VRraAV------------iaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 576 NSAVKRLLHVAVSD---SNDDVRRAAV------------IALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp HHHHHHHHHHHHHC---SCHHHHHHHH------------HHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccC---CcHHHHHHHH------------HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 88777799988874 3333222222 333455566667777777755544 3444444455555555
Q ss_pred cCCh-HHHHHHHHHHHH
Q 039757 354 HGNV-EMGERVTRKVLE 369 (415)
Q Consensus 354 ~~~~-~~a~~~~~~~~~ 369 (415)
.|+. .+++..+..+..
T Consensus 641 aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 641 AGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSSCCHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHcc
Confidence 5554 577778887764
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.99 E-value=0.06 Score=38.75 Aligned_cols=84 Identities=10% Similarity=-0.103 Sum_probs=62.5
Q ss_pred CCHHHHHHHHhcCCC-CCcCHHHHHHHHHHHhhcCChHH---HHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHH
Q 039757 322 GRLEQAEKIALGIPS-EITDVVVRRILLGACSFHGNVEM---GERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 322 g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
..+..+.+-|.+... ..|+..+-..+..++.+.++... ++.+++.+...+.| .......|+.++.+.|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444555543322 13677787788889998887766 88999988887632 5567778999999999999999
Q ss_pred HHHHHHhhhc
Q 039757 396 RLRRVMDERN 405 (415)
Q Consensus 396 ~~~~~m~~~~ 405 (415)
++++.+.+..
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999987654
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.87 E-value=1.3 Score=32.14 Aligned_cols=66 Identities=14% Similarity=-0.021 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCC
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDI-SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 290 (415)
+.......++.....|+-+.-.+++..+ ...+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344445555556666666666666663 33345555555666666666666666666666655554
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.37 Score=43.68 Aligned_cols=188 Identities=14% Similarity=0.088 Sum_probs=116.4
Q ss_pred cCChhHHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHH
Q 039757 203 NGAVRNCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~ 277 (415)
.++++.|...+-.+.+. +-.+........++..|...|+++...+.+.-+.... .....-..+++.+.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~------- 101 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVM------- 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHH-------
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------
Confidence 37788888777666543 2123356778888999999999999888777665532 11222233333221
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHcc--CCc---------chHHHHHHhHhcCCHHHHHHHHhcCCCC----C---c
Q 039757 278 AVENFERMQKVGLKPNRVTFLSVLNACSH--GGL---------HYGCLVDMLGRAGRLEQAEKIALGIPSE----I---T 339 (415)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~---------~~~~li~~~~~~g~~~~A~~~~~~~~~~----~---p 339 (415)
..+.... .++..+...++..... .|. ....|...|...|++.+|.+++.++... . -
T Consensus 102 --~~l~~~~----~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~ 175 (445)
T 4b4t_P 102 --EYLKSSK----SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE 175 (445)
T ss_dssp --HHHHHHC----TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH
T ss_pred --HHHhcCC----chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH
Confidence 1111110 1122222222222111 111 1134788899999999999998776432 1 1
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc---cCC----CccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEME---RGN----GGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
-...+...++.|...+|+..|..+++++.... +++ ...+...+..+...++|.+|.+.|.+.-+
T Consensus 176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 24477778889999999999999999985422 122 24566788888899999999888877644
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.72 E-value=0.15 Score=45.30 Aligned_cols=60 Identities=10% Similarity=-0.141 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
...++..+...|++++++..+..+....|-+...+..++.+|.+.|+..+|.+.|+++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677778888888888888777777777788888888888888888877777654
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.28 E-value=2 Score=32.44 Aligned_cols=58 Identities=10% Similarity=-0.075 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCh-------hhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 229 SNCLIDTYAKCGCIFSALKLFEDISVE---RKNL-------VSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
+-.-+..+...|.++.|+-+.+.+... +|++ .++..+.+++...|++.+|...|++..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334455566666777766666654333 2332 235556667777777777777777753
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.19 E-value=0.46 Score=42.20 Aligned_cols=71 Identities=15% Similarity=0.355 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh-----cCCCCChhhHH
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK-----VGLKPNRVTFL 298 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~ 298 (415)
+...++..+...|++++|...+..+....| +...|..+|.++.+.|+..+|+..|++..+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445577888899999999999988877755 777899999999999999999999998755 49999888744
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.06 E-value=3 Score=42.99 Aligned_cols=192 Identities=10% Similarity=0.040 Sum_probs=115.2
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------------------
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-------------------- 255 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------- 255 (415)
++..+...+..+.+..+.... +.++...-.+..+|...|++++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344455556666665544332 335555567788999999999999999886322
Q ss_pred -C---CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 256 -R---KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 256 -~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
. .-..-|..++..+-+.+.++.+.++-+...+.. .++......- .|..+.......|++++|...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~---------l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIA---------ITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHH---------HHHHHHHHHHHHCCSGGGGHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHH---------HHHHHHHHHHhhCCHHHHHHHH
Confidence 0 011237788888889999999888877766542 2222221111 1334677788889999998887
Q ss_pred hcCCCCCcCHHHHHHHHHHHhhcCCh------------HHHHHHHHHHHH-c-ccCCC-ccHHHHHHHHHhcCchhhHHH
Q 039757 332 LGIPSEITDVVVRRILLGACSFHGNV------------EMGERVTRKVLE-M-ERGNG-GDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 332 ~~~~~~~p~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~-~-~~~~~-~~~~~l~~~~~~~g~~~~A~~ 396 (415)
-.+....-.......|+..+|..|+. ++..+++..-.+ . .+.+. .-|..|-.-+...|++..|-.
T Consensus 962 ~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B 962 MVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence 65543322344566676666665544 444444443322 2 23332 335555666677888887765
Q ss_pred H-HHHHhh
Q 039757 397 L-RRVMDE 403 (415)
Q Consensus 397 ~-~~~m~~ 403 (415)
+ ++...+
T Consensus 1042 vmYe~~~R 1049 (1139)
T 4fhn_B 1042 IIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 5 444433
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.03 E-value=0.43 Score=35.37 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=70.0
Q ss_pred ChhhHHHHHHHHHccCch------HHHHHHHHHHHhcCCCCChh-hHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 258 NLVSWTSIISGFAMHGMG------KAAVENFERMQKVGLKPNRV-TFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 258 ~~~~~~~li~~~~~~~~~------~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
|..+|-..+...-+.|++ ++...+|++.... +.|+.. .+...+.-+.+ |. .+...++.++|.++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr----YA----~~~ei~D~d~aR~v 82 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR----FA----ELKAIQEPDDARDY 82 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH----HH----HHHHHHCGGGCHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH----HH----HHHHhcCHHHHHHH
Confidence 445555555555555555 5556666665543 333321 11111111100 11 12344788888888
Q ss_pred HhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 331 ALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 331 ~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
|+.+... ..=...|-...+--.+.|+...|.+++.+.+..++.+...+...++-+
T Consensus 83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 8766322 012567777777778899999999999999998888777776666544
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.98 E-value=4 Score=35.01 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=29.0
Q ss_pred ChhHHHHHHhhhhhcCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 039757 205 AVRNCQLIHGYGEKRGFN---AFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (415)
..++...-++.-++.|-. =.-...|.++..-|.+.+++++|.+++..-
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 344444444444554421 002345667777789999999999987653
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.76 E-value=1.1 Score=39.59 Aligned_cols=165 Identities=12% Similarity=-0.072 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhh--C----CChhhHHHHHHHHHccC-chHHHHHHHHHHHhcCCCCChhhH-H
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVE--R----KNLVSWTSIISGFAMHG-MGKAAVENFERMQKVGLKPNRVTF-L 298 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~-~ 298 (415)
.....|...|.+.|+.++..+++.....- . .....-..++..+.... ..+.-.++..+..+..- -+..+| .
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34456888889999999888888876554 0 12233556666666543 33444444444443211 112232 2
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--C---c--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--I---T--DVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
.-+.. .|+..|...|++.+|.+++.++... . + -...+-.-++.|...++..++...+.......
T Consensus 99 ~~l~~---------kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 99 QSLEA---------RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 21211 3788899999999998887665443 1 1 23356667778889999999999998886543
Q ss_pred --c-CCCc----cHHHHHHHHH-hcCchhhHHHHHHHH
Q 039757 372 --R-GNGG----DYVLMYNILA-GVGRYVDAERLRRVM 401 (415)
Q Consensus 372 --~-~~~~----~~~~l~~~~~-~~g~~~~A~~~~~~m 401 (415)
. +++. ....-+..+. ..++|.+|...|-+.
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2 2222 2233444566 789999998887664
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.21 E-value=1.1 Score=33.81 Aligned_cols=133 Identities=8% Similarity=-0.042 Sum_probs=68.8
Q ss_pred CCcchHHHHHHH--HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc
Q 039757 20 SLLHHTLLFNTL--LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV 97 (415)
Q Consensus 20 ~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 97 (415)
++.|-...|+.+ ++.+...|.++.|+-+.+.+......+...+++..-..++..+..++...|++..|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 366666655544 778889999999999999877532332210010001135677788899999999999999997542
Q ss_pred C--CCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 98 G--FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 98 g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
. +.-+..++.++- ....... -++. ..+...-.-+..+|.+.|++++|+.+++.+.
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---s~~~--~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---SQCL--PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHCC---------------------------CC--CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhcCCCcccccc----ccCCCcc---cccc--cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1 111111111110 0000000 0111 1233444446777777777777777777765
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.99 E-value=0.82 Score=33.89 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHhhcCCCh------HHHHHHHHHHHHHhhcCCCCCCCCCCc-hhHHHHHHH------HHhcCCCchHHH
Q 039757 23 HHTLLFNTLLHFYSLADSP------KKAFLLYKQLQQIYTHSHSPLRPLFDS-FTYSFLIRT------CVTLSYPNLGTQ 89 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~------~~~~~~~~~a~~ 89 (415)
-|..+|=..+...-+.|++ ++..++|++.. .. ++ | +. ..|..-+.. +...+++++|.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi---a~-~P--p---~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~ 81 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI---EA-LP--P---DKYGQNESFARIQVRFAELKAIQEPDDARD 81 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH---HH-SC--G---GGGTTCHHHHHHHHHHHHHHHHHCGGGCHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH---Hc-CC--c---cccccHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4677888888888888998 88888888887 22 22 2 21 111111111 123378999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
+|+.+++.+-.- ...|......-.+.|+++.|.+++....
T Consensus 82 vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 82 YFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 999997764333 7777777777888899999988887654
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.86 E-value=7.1 Score=40.23 Aligned_cols=159 Identities=12% Similarity=0.057 Sum_probs=94.3
Q ss_pred HHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCC---C------hhHHHHHHHHHHhc
Q 039757 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---N------VVSWTGILDGYTRM 178 (415)
Q Consensus 108 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~------~~~~~~li~~~~~~ 178 (415)
.++..+...+..+.+..+..-..+ +......+..+|...|++++|.+.|++.... + ...+..+.....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~-- 893 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH-- 893 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT--
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc--
Confidence 455666777888777776655543 4444456778899999999999999887521 1 011111110000
Q ss_pred cCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FD--IRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 179 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
. ...-..-|..++..+.+.+.++.+.++-....+..... ++ ...|..+.+.+...|++++|...+-.+...
T Consensus 894 --~----~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 894 --H----QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp --S----CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred --c----cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 0 11112335666777777777777777666655542111 11 125677778888888888888887777654
Q ss_pred CCChhhHHHHHHHHHccCch
Q 039757 256 RKNLVSWTSIISGFAMHGMG 275 (415)
Q Consensus 256 ~~~~~~~~~li~~~~~~~~~ 275 (415)
..-......|+...|..|..
T Consensus 968 ~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHhCCCh
Confidence 33344566666666665543
No 251
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.61 E-value=1.9 Score=33.74 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCCCCcCHH---HHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHH
Q 039757 324 LEQAEKIALGIPSEITDVV---VRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLR 398 (415)
Q Consensus 324 ~~~A~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 398 (415)
++++.+.|.....-..|+. .|-..+..+ ..++...+..+|..|...+.. -+..|...+..+...|++.+|.+++
T Consensus 60 LErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 60 MERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555554432234554 444444433 244577999999999998877 4567888999999999999999999
Q ss_pred HHHhhhcccc
Q 039757 399 RVMDERNALK 408 (415)
Q Consensus 399 ~~m~~~~~~~ 408 (415)
+.-.+.+-.|
T Consensus 139 ~~GI~~~A~P 148 (202)
T 3esl_A 139 ELGAENNCRP 148 (202)
T ss_dssp HHHHHTTCBS
T ss_pred HHHHHcCCcc
Confidence 9988877665
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.52 E-value=1.9 Score=31.60 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=53.2
Q ss_pred CcCHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcccC-CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 338 ITDVVVRRILLGACSFHGNV---EMGERVTRKVLEMERG-NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 338 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.|+..+--.+..++.++.+. .+++.+++.+...++. .......|..++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 47777777788888887754 5788888888887765 45566788889999999999999998877643
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.94 E-value=3.3 Score=28.18 Aligned_cols=65 Identities=6% Similarity=0.031 Sum_probs=49.0
Q ss_pred hcC-ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHH
Q 039757 202 QNG-AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIIS 267 (415)
Q Consensus 202 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~ 267 (415)
+.. |.-+.++-++.+......| ++.+..+.+++|-+.+++..|.++|+.++.. +....+|..+++
T Consensus 21 ~~~iD~~e~rrglN~l~~~DlVP-~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 21 KPDIDAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344 5566777778888877777 8888899999999999999999999888776 333445666654
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.60 E-value=1.2 Score=32.10 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=53.8
Q ss_pred CcCHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcccC-CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 338 ITDVVVRRILLGACSFHGNV---EMGERVTRKVLEMERG-NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 338 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.|+..+--.+..++.+..+. .+++.+++.+...++. ....+..|..++.+.|++++|.++.+.+.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 47777777778888877654 5788888888887764 45677789999999999999999998877543
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.88 E-value=12 Score=33.08 Aligned_cols=173 Identities=10% Similarity=-0.035 Sum_probs=108.7
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC---CCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhh-CCChhhH--
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA---FDIRVSNCLIDTYAKCG-CIFSALKLFEDISVE-RKNLVSW-- 262 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~-~~~~~~~-- 262 (415)
+.....+...|...|+.++...++.....-=... ........+++.+.... ..+.-.++..+..+. ...-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888999988888877665421111 13455677888877654 445555555554443 1122233
Q ss_pred ----HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-
Q 039757 263 ----TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE- 337 (415)
Q Consensus 263 ----~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 337 (415)
..++..|...|++.+|.+++.++.+.=-+.|..++. +.. |-.-+..|...+++.++...+......
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~l--lev-------~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLL--VEV-------QLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHH--HHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhH--HHH-------HHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 257889999999999999999988742233433333 332 223778899999999998888654322
Q ss_pred --C-cCHHHHHH----HHHHHh-hcCChHHHHHHHHHHHHcc
Q 039757 338 --I-TDVVVRRI----LLGACS-FHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 338 --~-p~~~~~~~----l~~~~~-~~~~~~~a~~~~~~~~~~~ 371 (415)
. |++..... -...+. ..+++..|...|-+..+..
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 1 33332211 122356 7899999998888876443
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.61 E-value=10 Score=32.14 Aligned_cols=180 Identities=9% Similarity=0.005 Sum_probs=83.7
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHH----HH
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV----EN 281 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~----~~ 281 (415)
+++...-++.-++.|-.=.-...|.++..-|.+.+++++|.+++..-.. .+.++|+...|- -+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~-------------~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL-------------SFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHH
Confidence 4444444444444441111245566777788899999999998765332 123334333322 23
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHH
Q 039757 282 FERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMG 360 (415)
Q Consensus 282 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a 360 (415)
++-..+.++.++......++.-+..-...- -.+..-+.+|++.-.+.... ..++.....+...|.+.|++.+|
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~------~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSE------PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTC------TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCC------chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 333444455555544444333221100000 00000122233332222211 23555566666666666666655
Q ss_pred HHHHHH----------------HHHc--ccC-CCccHH-HHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 361 ERVTRK----------------VLEM--ERG-NGGDYV-LMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 361 ~~~~~~----------------~~~~--~~~-~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
...|-. ..+. +.+ ....|. ..+--|.-.|+...|..+++...+.
T Consensus 154 ~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 154 ERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 554321 1111 111 122221 2233456788999999998877643
No 257
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=87.99 E-value=3.6 Score=30.62 Aligned_cols=81 Identities=14% Similarity=-0.052 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+.+.+.|.....-..|+.....-+.. +. ..+++..+|..|...+.. -+..|...+..+...|++.+|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~y-a~--~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKF-AE--YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHH-HT--TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHH-HH--hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566664433223455433333322 11 124489999999998877 45678889999999999999999999988
Q ss_pred hhcccc
Q 039757 403 ERNALK 408 (415)
Q Consensus 403 ~~~~~~ 408 (415)
+.+-.|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 877665
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.92 E-value=12 Score=31.85 Aligned_cols=182 Identities=10% Similarity=-0.010 Sum_probs=103.7
Q ss_pred HHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCch-
Q 039757 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL- 86 (415)
Q Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~- 86 (415)
..+-++.-+..|...---..|-++..-|.+.+++++|++++..-- ..+.+.|+...
T Consensus 16 ~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga-----------------------~~ll~~~Q~~sa 72 (312)
T 2wpv_A 16 TLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGA-----------------------LSFLKAKQGGSG 72 (312)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------HHHHHTTCHHHH
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----------------------HHHHHCCCcchH
Confidence 334444445555555555566677777777777777777654332 12233344333
Q ss_pred ---HHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh-HHHHHhcccC----------CCchhhHHHHHHHHHhhCCHHH
Q 039757 87 ---GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK-DSSKLFDELP----------ERNLVTWNVMITGLVKWGELEY 152 (415)
Q Consensus 87 ---a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~ 152 (415)
+.-+.+...+.+.+++......++..+.....-+ .=.++++.+. .-|+..+..+...|.+.|++.+
T Consensus 73 ~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~ 152 (312)
T 2wpv_A 73 TDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYE 152 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHH
Confidence 3334555556677777777777777765543211 1123333332 1477788999999999999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhc---cCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhh
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRM---NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (415)
|...|-.-...+...+..++--+.+. |...+ .+...-..++ .+...++...|..++....
T Consensus 153 A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e----~dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 153 AERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST----VAEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH----HHHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch----HHHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 99988744333566777776666654 21111 1111122222 2445667777777666544
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.80 E-value=6.2 Score=28.53 Aligned_cols=62 Identities=6% Similarity=0.029 Sum_probs=46.8
Q ss_pred ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHH
Q 039757 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIIS 267 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~ 267 (415)
|.-+..+-++.+......| ++.+..+.+++|-+.+++..|.++|+.++.. ++...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVP-eP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 5556677777777777777 8888888888998889999999998888776 344445666654
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.36 E-value=13 Score=31.84 Aligned_cols=184 Identities=11% Similarity=-0.027 Sum_probs=109.0
Q ss_pred hHHHHHHhHhhccCC---cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 7 VTTRIHSHLLTTNSL---LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 7 ~~~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
...+-++.-+..|.. .---..|-++..-|.+.+++++|++++-.-- ..+.+.|+
T Consensus 14 ~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA-----------------------~~ll~~~Q 70 (336)
T 3lpz_A 14 RIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS-----------------------QTLLRSGQ 70 (336)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------HHHHHTTC
T ss_pred HHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-----------------------HHHHHCCC
Confidence 334444555566654 4444567777777888888888888654432 12233343
Q ss_pred Cch----HHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh-HHHHHhcccC----------CCchhhHHHHHHHHHhhC
Q 039757 84 PNL----GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK-DSSKLFDELP----------ERNLVTWNVMITGLVKWG 148 (415)
Q Consensus 84 ~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~----------~~~~~~~~~li~~~~~~g 148 (415)
... +.-+.+...+.++++|......++..+.....-+ .=.++++++. .-|+.....+...|.+.+
T Consensus 71 ~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~ 150 (336)
T 3lpz_A 71 GGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG 150 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC
Confidence 333 3344455566777788777777777776655321 1122333332 246778888999999999
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhh
Q 039757 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218 (415)
Q Consensus 149 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (415)
++.+|...|---..++...+..++..|.+.+.. ...+...-..++ .|...++...|..++....+
T Consensus 151 ~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~----~e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 151 EFEAAEKHLVLGTKESPEVLARMEYEWYKQDES----HTAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG----GGHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC----ccHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 999999998533333447787777677665431 122222333333 35566788888776655543
No 261
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.65 E-value=10 Score=29.79 Aligned_cols=154 Identities=13% Similarity=0.026 Sum_probs=78.3
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
++..+-...+..+.+.|..+....+.+.+.++|...-...+.++.+.|+.+....+.+.+..++...-...+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~a------ 104 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA------ 104 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHH------
Confidence 55666666667777777755555556666667766666667777777765444444444444444333333333
Q ss_pred CCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChh
Q 039757 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260 (415)
Q Consensus 181 ~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 260 (415)
+.+.++.+.. ..+..+... + +..+....+.++.+.|..+ +...+..+.. .++..
T Consensus 105 -------------------L~~~~~~~~~-~~L~~~l~d---~-~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-d~~~~ 158 (211)
T 3ltm_A 105 -------------------LGQIGDERAV-EPLIKALKD---E-DWFVRIAAAFALGEIGDER-AVEPLIKALK-DEDGW 158 (211)
T ss_dssp -------------------HHHHCCGGGH-HHHHHHTTC---S-SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-CSSHH
T ss_pred -------------------HHHhCcHHHH-HHHHHHHhC---C-CHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-CCCHH
Confidence 3333332222 222222221 2 5555555666666666543 3333333332 14555
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.-...+.++.+.+. .++...+.++.+
T Consensus 159 vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 159 VRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 55555555555554 344444545444
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.57 E-value=4.5 Score=36.38 Aligned_cols=60 Identities=15% Similarity=-0.042 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhh--CC--ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVE--RK--NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
+...+...|.+.|+++.|.+.|.++... .+ -...+-.+++.+...+++..+...+.+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455667777777777777777776654 11 234466666667777777777777666543
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.41 E-value=5.8 Score=26.84 Aligned_cols=79 Identities=8% Similarity=0.043 Sum_probs=60.6
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
...++|..+-+.+...|. ...+-.+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 366889999998877653 33333444567889999999999999999999999988754 47888888888886665
Q ss_pred CCC
Q 039757 162 CRN 164 (415)
Q Consensus 162 ~~~ 164 (415)
..+
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 433
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.15 E-value=3.8 Score=33.76 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=46.5
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 258 (415)
....+.|+++.+......-++. .|.|......|+..+|-.|+|++|.+-++...+..|+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3456778888888888877777 5778888888888888888888888888877776554
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.03 E-value=6.2 Score=26.77 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=61.5
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
...++|..+-+.+...|. ...+-.+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 366889999998877653 33333444567889999999999999999999999988765 47888888888887776
Q ss_pred CCC
Q 039757 162 CRN 164 (415)
Q Consensus 162 ~~~ 164 (415)
..+
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 543
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.86 E-value=14 Score=30.54 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=77.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchH
Q 039757 234 DTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG 312 (415)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 312 (415)
....+.|++++|++....-.+..| |...-..|+..+|-.|++++|.+-++...+. .|+...-..+ |.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~----------yr 72 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQ----------LR 72 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHH----------HH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHH----------HH
Confidence 345678899999998887666644 7888899999999999999999999888774 4554432221 11
Q ss_pred HHHHHhHhcCCHHHHH-HHHhcCCC-C--CcCHHHHHHHHHHHh--hcCChHHHHHHHHHHHHcccC
Q 039757 313 CLVDMLGRAGRLEQAE-KIALGIPS-E--ITDVVVRRILLGACS--FHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~-~~~~~~~~-~--~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.+|.+ +... ++|..-.. . .....-...++.+.. ..|+.++|.++-..+.+.-+.
T Consensus 73 ~lI~a-------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 73 HLVKA-------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHH-------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHH-------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 12221 2222 23322111 1 112223445555543 569999999999999887655
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.99 E-value=12 Score=29.27 Aligned_cols=184 Identities=14% Similarity=0.033 Sum_probs=100.0
Q ss_pred CChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhH
Q 039757 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAV 196 (415)
Q Consensus 117 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~l 196 (415)
++.+....+.+.+..++...-...+..+.+.|..+..-.+.+.+..++... -...
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~v-------------------------r~~a 70 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWV-------------------------RRAA 70 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHH-------------------------HHHH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHH-------------------------HHHH
Confidence 344445555556666777777777777887777554455555554444333 3333
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchH
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 276 (415)
+.++...++.+....+. .+... + +..+....+.++.+.|+.+....+.+.+.. ++...-...+.++...|..+
T Consensus 71 ~~aL~~~~~~~~~~~L~-~~l~~---~-~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~ 143 (211)
T 3ltm_A 71 ADALGQIGDERAVEPLI-KALKD---E-DGWVRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFALGEIGDER 143 (211)
T ss_dssp HHHHHHHCCGGGHHHHH-HHTTC---S-SHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHhhCCHHHHHHHH-HHHcC---C-CHHHHHHHHHHHHHhCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHH
Confidence 34444444433333333 33322 2 777788888888888876544444443333 67767667777777777644
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc--chHHHHHHhHhcCCH---HHHHHHHhcCCCC
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--HYGCLVDMLGRAGRL---EQAEKIALGIPSE 337 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~~li~~~~~~g~~---~~A~~~~~~~~~~ 337 (415)
+...+..+.. .++...-...+.++...+. ....|...+ +.++. ..|.+.+..+...
T Consensus 144 -~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 144 -AVEPLIKALK---DEDGWVRQSAADALGEIGGERVRAAMEKLA-ETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHHHHHHHHHHH-HHCCHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHc---CCCHHHHHHHHHHHHHhCchhHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCC
Confidence 4455555554 3566665666666665554 233344333 33433 3455556655544
No 268
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.92 E-value=8.4 Score=37.30 Aligned_cols=55 Identities=5% Similarity=-0.026 Sum_probs=41.9
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
...|...|+++.|+++-.+..... +-+-.+|-.|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 455667788888888888877663 4456778888888888888888888888775
No 269
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=84.78 E-value=6.3 Score=29.76 Aligned_cols=51 Identities=8% Similarity=-0.052 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHhhhcccc
Q 039757 358 EMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408 (415)
Q Consensus 358 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 408 (415)
+.+..+|..|...+.. -+..|...+..+...|++.+|.++++.-++.+..|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3477889999988877 45667888888999999999999999888877665
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.17 E-value=13 Score=28.85 Aligned_cols=170 Identities=12% Similarity=0.042 Sum_probs=93.9
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHh
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 146 (415)
|...-...+..+...+..+....+.+ +.. .++..+....+.++.+.|+.+....+.+.+..++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44555555555556555333333333 322 34555666667777777776666666666667777777777778888
Q ss_pred hCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH
Q 039757 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 226 (415)
.|+.+....+.+.+..++... -...+.++.+.++.+ +...+..+... + +.
T Consensus 103 ~~~~~~~~~L~~~l~d~~~~v-------------------------r~~a~~aL~~~~~~~-~~~~L~~~l~d---~-~~ 152 (201)
T 3ltj_A 103 IGDERAVEPLIKALKDEDWFV-------------------------RIAAAFALGEIGDER-AVEPLIKALKD---E-DG 152 (201)
T ss_dssp HCCGGGHHHHHHHTTCSSHHH-------------------------HHHHHHHHHHHTCGG-GHHHHHHHTTC---S-SH
T ss_pred hCcHHHHHHHHHHHcCCCHHH-------------------------HHHHHHHHHHhCCHH-HHHHHHHHHcC---C-CH
Confidence 777654444444444444333 333334444444433 33333333332 2 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHcc
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 272 (415)
.+-...+.++...|.. ++...+..+... ++...-...+.++.+.
T Consensus 153 ~vr~~A~~aL~~~~~~-~~~~~L~~~l~d-~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 153 WVRQSAADALGEIGGE-RVRAAMEKLAET-GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHHHCSH-HHHHHHHHHHHH-CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 6777777777777764 455555555443 5655555555555443
No 271
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.36 E-value=8.6 Score=26.20 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=29.8
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
....- | ++....+.+++|.+.+++..|.++|+.++.+. .+...+|..+++
T Consensus 38 ~~DlV--P---~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 38 GYDLV--P---EPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp TSSBC--C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred ccccC--C---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 44444 5 66677777777777777777777777665432 233444555544
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.96 E-value=8.8 Score=26.01 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 353 (415)
..++|..+-+-+...| + .-...+|+ +..+...|++++|..+.+... .||...|-+|.. .+
T Consensus 21 ~HqEA~tIAdwL~~~~---~-~E~v~lIR------------~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~r 80 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---Q-DEAARLIR------------ISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WH 80 (115)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHH------------HHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHH------------HHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--Hh
Confidence 5677777777776653 3 22223332 234778999999999988887 489999987755 47
Q ss_pred cCChHHHHHHHHHHHHcccC
Q 039757 354 HGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~ 373 (415)
.|-.+++...+..+...+.+
T Consensus 81 lGl~s~le~rL~~la~sg~p 100 (115)
T 2uwj_G 81 LGLGAALDRRLAGLGGSSDP 100 (115)
T ss_dssp TTCHHHHHHHHHHHHTCSSH
T ss_pred cccHHHHHHHHHHHHhCCCH
Confidence 78888888877777665544
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.61 E-value=9.1 Score=25.97 Aligned_cols=80 Identities=13% Similarity=0.005 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 353 (415)
..++|..+-+-+...| + .-...+|+ +..+...|++++|..+.+... .||...|-+|.. .+
T Consensus 22 ~HqEA~tIAdwL~~~~---~-~E~v~lIR------------~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~r 81 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---E-EEAVQLIR------------LSSLMNRGDYASALQQGNKLA--YPDLEPWLALCE--YR 81 (116)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHH------------HHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHH------------HHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--Hh
Confidence 5677777777666643 3 22222232 234678899999998888877 388888877755 46
Q ss_pred cCChHHHHHHHHHHHHcccC
Q 039757 354 HGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~ 373 (415)
.|-.+++...+..+...+.+
T Consensus 82 lGl~s~le~rL~~la~sg~p 101 (116)
T 2p58_C 82 LGLGSALESRLNRLARSQDP 101 (116)
T ss_dssp HTCHHHHHHHHHHHTTCCCH
T ss_pred cccHHHHHHHHHHHHhCCCH
Confidence 67777777777666555443
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.73 E-value=16 Score=28.25 Aligned_cols=169 Identities=12% Similarity=0.048 Sum_probs=98.3
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
+|..+....+..+.+.+..+....+.+.+..++...-...+.++.+.|+.+..-.+.+.+..++..
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~-------------- 91 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW-------------- 91 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH--------------
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH--------------
Confidence 455555556666666666555555666666677766667777777777655444455545444433
Q ss_pred CCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChh
Q 039757 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260 (415)
Q Consensus 181 ~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 260 (415)
.-...+.++.+.++.+....+.. +... + +..+-...+.++.+.++.+. ...+..+... ++..
T Consensus 92 -----------vr~~a~~aL~~~~~~~~~~~L~~-~l~d---~-~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~d-~~~~ 153 (201)
T 3ltj_A 92 -----------VRQSAAVALGQIGDERAVEPLIK-ALKD---E-DWFVRIAAAFALGEIGDERA-VEPLIKALKD-EDGW 153 (201)
T ss_dssp -----------HHHHHHHHHHHHCCGGGHHHHHH-HTTC---S-SHHHHHHHHHHHHHHTCGGG-HHHHHHHTTC-SSHH
T ss_pred -----------HHHHHHHHHHHhCcHHHHHHHHH-HHcC---C-CHHHHHHHHHHHHHhCCHHH-HHHHHHHHcC-CCHH
Confidence 33344444444454433333333 3322 3 77777788888888887544 4444444332 6777
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHc
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (415)
.-...+.++...|. +++...+..+... ++...-...+.++.
T Consensus 154 vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 154 VRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 77777778887776 4566666666653 45544444444443
No 275
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.25 E-value=17 Score=26.28 Aligned_cols=86 Identities=6% Similarity=0.002 Sum_probs=48.2
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCCh---HHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSP---KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
+++...++-+...+..+-.|++.+--.+..++.++.+. .+++.+++.+. ..++. . ....+--|.-++.+
T Consensus 19 ~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~---~~~~~--~---~Rd~LYyLAvg~yk 90 (134)
T 3o48_A 19 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY---KEAES--R---RRECLYYLTIGCYK 90 (134)
T ss_dssp CHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH---HHCGG--G---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH---hcCcc--h---hHHHHHHHHHHHHH
Confidence 34444444444433212345555555555666665543 45677776666 44432 2 34445555666777
Q ss_pred cCCCchHHHHHHHHHHc
Q 039757 81 LSYPNLGTQLHAVISKV 97 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (415)
.|+++.|.+..+.+.+.
T Consensus 91 lgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 91 LGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HTCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHhh
Confidence 77777777777777664
No 276
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.07 E-value=17 Score=26.30 Aligned_cols=43 Identities=5% Similarity=0.035 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 88 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
.+-++.+....+-|++.+..+.+.+|-|.+|+..|.++|+.++
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444555555555555566655566666666555554
No 277
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=78.05 E-value=7.8 Score=30.91 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+++.+.|.....-..|......-+. |+. ..+.+..+|..|...+.. -...|...+..+...|++.+|.++|+.-+
T Consensus 101 Erc~~~F~~~~rYknD~RyLklWl~-Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 101 ERCTREFVRNPLYKDDVRYLRIWMQ-YVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHH-HHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHH-HHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555443322345543332222 222 135777899999988877 45668888889999999999999998888
Q ss_pred hhcccc
Q 039757 403 ERNALK 408 (415)
Q Consensus 403 ~~~~~~ 408 (415)
+.+-.|
T Consensus 178 ~~~A~P 183 (223)
T 4aez_C 178 RMKAKP 183 (223)
T ss_dssp HHTCBS
T ss_pred HcCCcc
Confidence 777665
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.04 E-value=37 Score=30.37 Aligned_cols=108 Identities=9% Similarity=-0.104 Sum_probs=73.1
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCChhhHHHH--
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKNLVSWTSI-- 265 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l-- 265 (415)
+...+...+.+.|+++.|.+.|.++...-..+ .-...+-..++.+...+++..+...++++... .++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 34556777888999999999999988753222 13567778899999999999999999998655 3343332222
Q ss_pred --HHHHHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 266 --ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 266 --i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
...+...+++..|...|-+....--..+...+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~ 248 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYES 248 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHH
Confidence 2224457899999988887655422333333333
No 279
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.59 E-value=21 Score=26.12 Aligned_cols=86 Identities=6% Similarity=0.002 Sum_probs=50.0
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCCh---HHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSP---KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
+|+....+-..-.+..+-.|++.+--.+..++.++.+. .+++.+++.+. ..++. . .....--|.-++.+
T Consensus 18 ~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~---~~~~~--~---~RdcLYyLAvg~yk 89 (144)
T 1y8m_A 18 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY---KEAES--R---RRECLYYLTIGCYK 89 (144)
T ss_dssp CHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH---HHCCS--T---HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---hcCcc--c---hhHHHHHHHHHHHH
Confidence 34444444444444322356666666666677766544 45666666666 44433 1 33344445556777
Q ss_pred cCCCchHHHHHHHHHHc
Q 039757 81 LSYPNLGTQLHAVISKV 97 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (415)
.|+++.|.++.+.+.+.
T Consensus 90 l~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 90 LGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 77777777777777765
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=73.71 E-value=35 Score=32.50 Aligned_cols=94 Identities=11% Similarity=-0.034 Sum_probs=48.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc-c---------------CchHHHHHHHHHHHhc-----CCCC-
Q 039757 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM-H---------------GMGKAAVENFERMQKV-----GLKP- 292 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~-~---------------~~~~~A~~~~~~m~~~-----g~~p- 292 (415)
-+...|++++|..+|+-..+...-....|.++.-... . +-...|..+.+..... .+.+
T Consensus 452 ~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 531 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVK 531 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHH
T ss_pred HHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHH
Confidence 4556677777777776665521112234444332221 1 1122344444443221 1221
Q ss_pred ChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 293 NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 293 ~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
+..|+..|+.-. -+..+...|+++.|++.++++.--
T Consensus 532 ~~~t~~lLl~l~---------~f~~~~~~g~~~~AL~~i~~L~ll 567 (661)
T 2qx5_A 532 NKEICMLLLNIS---------SIRELYFNKQWQETLSQMELLDLL 567 (661)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHH---------HHHHHHHcCCHHHHHHHHHhCCCC
Confidence 345566655432 233448899999999999987644
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.06 E-value=31 Score=26.94 Aligned_cols=53 Identities=9% Similarity=-0.005 Sum_probs=45.5
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
.+....+..+|..|...|+-..-...|......+...|++.+|.++|+.-.+.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34466889999999999988878888999999999999999999999987773
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.98 E-value=27 Score=26.28 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
....+|..|..+|+-..-...|......+...|++.+|.++|+.-...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 366677777777776666677777777777777777777777766653
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=66.62 E-value=31 Score=24.69 Aligned_cols=29 Identities=10% Similarity=0.269 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 136 TWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
..+.++.-|...|+.++|...++++..|.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~ 37 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH 37 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc
Confidence 35678888999999999999999997553
No 284
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=65.79 E-value=54 Score=26.83 Aligned_cols=199 Identities=7% Similarity=-0.108 Sum_probs=90.6
Q ss_pred CchhHHHHHHHHHhcCCCch-HHHHHHHHH---HcCCCCchhhHHHHHHHHHcCCC-----hhHHHHHh-cccCCCchhh
Q 039757 67 DSFTYSFLIRTCVTLSYPNL-GTQLHAVIS---KVGFQSHVYVNTALVNMYVSLGF-----LKDSSKLF-DELPERNLVT 136 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~---~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~-~~~~~~~~~~ 136 (415)
+...-...+.++.+.|.... ...++..+. .. .++..+....+.++...+. ...+...+ ..+..++..+
T Consensus 67 ~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~v 144 (280)
T 1oyz_A 67 NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNV 144 (280)
T ss_dssp SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHH
T ss_pred CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHH
Confidence 44455555666666664322 222222221 11 3455555555555555441 22333333 2334466665
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcC-ChhHHHHHHhh
Q 039757 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG-AVRNCQLIHGY 215 (415)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~ 215 (415)
-...+.++.+.|+.+..-.+.+.+..++.. .-...+.++...+ +...+...+..
T Consensus 145 R~~a~~aL~~~~~~~~~~~L~~~l~d~~~~-------------------------vr~~a~~aL~~~~~~~~~~~~~L~~ 199 (280)
T 1oyz_A 145 RRATAFAISVINDKATIPLLINLLKDPNGD-------------------------VRNWAAFAININKYDNSDIRDCFVE 199 (280)
T ss_dssp HHHHHHHHHTC---CCHHHHHHHHTCSSHH-------------------------HHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcCCCHH-------------------------HHHHHHHHHHhhccCcHHHHHHHHH
Confidence 555666666665533222222333333332 2223333333332 12233333333
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh
Q 039757 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295 (415)
Q Consensus 216 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 295 (415)
+.+. + +..+....+.++.+.|+......+...+.. ++ .....+.++.+.|.. .+...+.++... .++..
T Consensus 200 ~l~d---~-~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d--~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~~--~~~~~ 268 (280)
T 1oyz_A 200 MLQD---K-NEEVRIEAIIGLSYRKDKRVLSVLCDELKK--NT--VYDDIIEAAGELGDK-TLLPVLDTMLYK--FDDNE 268 (280)
T ss_dssp HTTC---S-CHHHHHHHHHHHHHTTCGGGHHHHHHHHTS--SS--CCHHHHHHHHHHCCG-GGHHHHHHHHTT--SSCCH
T ss_pred HhcC---C-CHHHHHHHHHHHHHhCCHhhHHHHHHHhcC--cc--HHHHHHHHHHhcCch-hhhHHHHHHHhc--CCCcH
Confidence 3332 2 666677777777777765444444444433 44 233445666666663 556666666543 23444
Q ss_pred hHHHHHHH
Q 039757 296 TFLSVLNA 303 (415)
Q Consensus 296 ~~~~ll~~ 303 (415)
.....+.+
T Consensus 269 ~~~~~~~~ 276 (280)
T 1oyz_A 269 IITSAIDK 276 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=65.45 E-value=25 Score=27.23 Aligned_cols=61 Identities=20% Similarity=0.131 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCCCcCHH-HHH-----HHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHH
Q 039757 324 LEQAEKIALGIPSEITDVV-VRR-----ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384 (415)
Q Consensus 324 ~~~A~~~~~~~~~~~p~~~-~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 384 (415)
++.|+.+|+.+....+... ... ..+..|.+.|.+++|.++|++.....+.+...-..|...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 6789999999988743221 222 234469999999999999999887776555444444433
No 286
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.26 E-value=1.2e+02 Score=30.43 Aligned_cols=85 Identities=7% Similarity=0.013 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCCCCccCCCch---------HHHH-hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH--HHHHHHHHHH
Q 039757 169 TGILDGYTRMNRSNGASTEPSE---------ITIL-AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI--RVSNCLIDTY 236 (415)
Q Consensus 169 ~~li~~~~~~~~~~~a~~~~~~---------~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~ 236 (415)
.++.+++...|-..+.....+. ..+. ...-+....|+.+++..++......+. ..+. ..-..+.-+.
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~-s~~~~ik~GAllaLGl 421 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSR-ASSRFIKGGSLYGLGL 421 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSC-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccC-CCcHHHHHHHHHHHHH
Confidence 3456677777755554321111 1111 112234567888888888877665320 1122 2333334445
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 039757 237 AKCGCIFSALKLFEDISV 254 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~ 254 (415)
...|.-+++.+++.....
T Consensus 422 i~ag~~~~~~~lL~~~L~ 439 (963)
T 4ady_A 422 IYAGFGRDTTDYLKNIIV 439 (963)
T ss_dssp HTTTTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHc
Confidence 555655567777666554
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.08 E-value=33 Score=27.66 Aligned_cols=95 Identities=11% Similarity=0.032 Sum_probs=53.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHH
Q 039757 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109 (415)
Q Consensus 30 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 109 (415)
.-++.+....++++|.+++++.......... +...........+..-.....-..+..+.+.+.. .++.......
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~--~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~ 97 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSE--RISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHH
Confidence 5578899999999999999988754333221 1000112223334433333333444445444422 3344445556
Q ss_pred HHHHHcCCChhHHHHHhccc
Q 039757 110 VNMYVSLGFLKDSSKLFDEL 129 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~ 129 (415)
+..+.+.|+-++|.++|-+.
T Consensus 98 v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHH
Confidence 67777777777777766544
No 288
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=63.28 E-value=30 Score=29.78 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCChhHHHHHhcccCCCch---hhHHHHHHHHHhh-CCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC--
Q 039757 107 TALVNMYVSLGFLKDSSKLFDELPERNL---VTWNVMITGLVKW-GELEYARSLFEEMPCRNVVSWTGILDGYTRMNR-- 180 (415)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~-- 180 (415)
..++.-|...|+.++|...++++..|.. .+...+..++-+. ..-+.+..++..+.+.+..+-..+..++.+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 4456666677777777777777765531 1222222222221 123344555555555555555555555444211
Q ss_pred CCCccCCCchHHHHhHHHH-HhhcCChhH---HHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 181 SNGASTEPSEITILAVLPA-IWQNGAVRN---CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 181 ~~~a~~~~~~~~~~~ll~~-~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
.+-....|....+..-+-+ +...|-... ...+.+.+...|. .......++..+.+....+.+.++|.+
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~---~~~fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK---AASLLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC---HHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch---HHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 1112245555544433333 233333221 1223333333331 344455566666666677777777765
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.79 E-value=46 Score=24.65 Aligned_cols=49 Identities=6% Similarity=0.022 Sum_probs=39.5
Q ss_pred hHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
+.+..+|..|..+|+-..-...|......+...|++.+|.++|+.-.+.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3478888888888887767788888888888888888888888877663
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=61.20 E-value=26 Score=27.87 Aligned_cols=49 Identities=4% Similarity=-0.046 Sum_probs=41.7
Q ss_pred hHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
+....+|..|...|+-..-...|......+...|++.+|.++|+.-...
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5777899999999887777888888899999999999999999887664
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.53 E-value=28 Score=25.86 Aligned_cols=29 Identities=10% Similarity=0.269 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 136 TWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
..+.++.-|...|+.++|...++++..|.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~ 39 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH 39 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc
Confidence 35678888999999999999999997553
No 292
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.65 E-value=63 Score=26.15 Aligned_cols=254 Identities=12% Similarity=-0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHH--HHHHHHHhhCC
Q 039757 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN--VMITGLVKWGE 149 (415)
Q Consensus 72 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~li~~~~~~g~ 149 (415)
.+.+...++.|+.+.+..+++.-.......+..-++ .+...+..|+.+-+..+++.-..++..... +.+...+..|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS 84 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC----
Q 039757 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD---- 225 (415)
Q Consensus 150 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 225 (415)
.+-+.-+++.-..++ ..+..-.+.+..++.... ..+.+.+.+.|..+ +
T Consensus 85 ~~~v~~Ll~~g~~~~----------------------~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~-~~~~~ 136 (285)
T 1wdy_A 85 VKLLKLFLSKGADVN----------------------ECDFYGFTAFMEAAVYGK-----VKALKFLYKRGANV-NLRRK 136 (285)
T ss_dssp HHHHHHHHHTTCCTT----------------------CBCTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCT-TCCCC
T ss_pred HHHHHHHHHcCCCCC----------------------ccCcccCCHHHHHHHhCC-----HHHHHHHHHhCCCc-ccccc
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 226 --------IRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 226 --------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
...-...+...+..|+.+-+..+++..... ......-...+...+..++......+++.+.+.|..++...
T Consensus 137 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~ 216 (285)
T 1wdy_A 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216 (285)
T ss_dssp CCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCC
T ss_pred cHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcC
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
.. -.+.+...++.|+.+-+..+++..... ......-.+-+....+.|+.+-+.-+++.
T Consensus 217 ~~------------g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 217 ER------------GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275 (285)
T ss_dssp TT------------SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CC------------CCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.64 E-value=52 Score=33.08 Aligned_cols=47 Identities=4% Similarity=-0.233 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccC-CC----ccHHHHHHHHHhcC
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERG-NG----GDYVLMYNILAGVG 389 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~g 389 (415)
.|..++..+.+.+-++.+.++.+.+++.-.+ +. ..|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 6777888888888899998888888875433 22 35556666665544
No 294
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=55.69 E-value=74 Score=25.10 Aligned_cols=94 Identities=9% Similarity=-0.049 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhhCC-Chh--------hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchH
Q 039757 242 IFSALKLFEDISVERK-NLV--------SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG 312 (415)
Q Consensus 242 ~~~A~~~~~~~~~~~~-~~~--------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 312 (415)
++.|..+|+.+....+ +.. .--..+..|.+.|.+++|.+++++.... .|+..-...-|....+..+.|.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~Kd~~H 165 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREKNLAH 165 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccCccc
Confidence 4566667766665521 111 0122345677788888888888887664 3333334444444333333344
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
.++.-+.-..-.+....+++...+.
T Consensus 166 ~~lqnFSy~~~~~ki~~fve~~~~~ 190 (235)
T 3bu8_A 166 PVIQNFSYETFQQKMLRFLESHLDD 190 (235)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhccHHHHHHHHHHHHHHHhcc
Confidence 4444333333344445555554433
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.99 E-value=1e+02 Score=28.34 Aligned_cols=124 Identities=12% Similarity=0.173 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCch--hH-HHHHHHHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSF--TY-SFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
...+|.+++.|...+.++.|..+..+.. - +. ....+.. .| --+.+...-.+++.+|.+.+....... ++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---f--P~--~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~ 302 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---Y--PH--TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PH 302 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---S--CT--TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---C--Cc--ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Cc
Confidence 4579999999999999999999998874 1 11 0000111 11 223455667788999999998886653 22
Q ss_pred chh-------h--HHHHHHHHHcCCChhHHHHHhcccC-CCchhhHHHHHHHHHhhCCHHHHHHHHhhC
Q 039757 102 HVY-------V--NTALVNMYVSLGFLKDSSKLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEM 160 (415)
Q Consensus 102 ~~~-------~--~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (415)
+.. . |..++..+ .|++.+ ..+|..-. +.....|..|..++ +.|++.+-...++.-
T Consensus 303 ~~~a~gfr~~a~K~lI~V~LL--lG~iP~-r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 303 NSKSLGFLQQSNKLHCCIQLL--MGDIPE-LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKY 367 (523)
T ss_dssp SSSCSHHHHHHHHHHHHHHHH--HTCCCC-HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHHhHHhh--cCCCCC-hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 221 1 22222333 466544 23333211 12345677777775 778887766666554
No 296
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=53.96 E-value=9.3 Score=26.91 Aligned_cols=68 Identities=4% Similarity=-0.160 Sum_probs=46.5
Q ss_pred hccCCCCcc-CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039757 177 RMNRSNGAS-TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248 (415)
Q Consensus 177 ~~~~~~~a~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 248 (415)
+.++++++. .......|.-.+...+.+++.+.|+.+++..++.| +...|.+++-.|-..=+++-+.++
T Consensus 18 kN~rw~qSI~L~KkDkLykDAietAa~S~d~elaEeLL~yFVe~g----~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 18 GSHMWKQSVELAKKDSLYKDAMQYASESKDTELAEELLQWFLQEE----KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SCCCCSSCCCCCSCCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC----SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred ccccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC----chHHHHHHHHHHHhccChHHHHHH
Confidence 445555554 23334456667777788899999999999988876 667777777766666666655554
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.85 E-value=19 Score=25.89 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHH
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQ 52 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~ 52 (415)
..+.++.-|...|+.++|.+.++++.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 35678889999999999999999986
No 298
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=53.36 E-value=68 Score=23.98 Aligned_cols=72 Identities=8% Similarity=0.020 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc--CCCCchhhHHHHHHHHHcCCC
Q 039757 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV--GFQSHVYVNTALVNMYVSLGF 118 (415)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~ 118 (415)
.+.+++-+....+ ..|.+ -+..-..++..+...+.+-.|.++++.+.+. +...+..|.=.-++.+...|-
T Consensus 13 ~~~~~~~~~~~L~--~~g~r------~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 13 YDVLLERFKKILR--QGGLK------YTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHH--HHTCC------CCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH--HcCCC------CCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 4555665655554 77888 3445566777787877888999999999877 655555553345677888876
Q ss_pred hh
Q 039757 119 LK 120 (415)
Q Consensus 119 ~~ 120 (415)
+.
T Consensus 85 v~ 86 (162)
T 4ets_A 85 VT 86 (162)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 299
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.11 E-value=65 Score=25.36 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHH--HHHHHHHcCCChhHHHHHhcccCCCchhhHH--HHHHHHHhhC
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT--ALVNMYVSLGFLKDSSKLFDELPERNLVTWN--VMITGLVKWG 148 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~li~~~~~~g 148 (415)
+.+...+..|+.+.+..+++.+.+.|..++..... +.+...+..|+.+-+..+++.-..++..... +.+...+..|
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHH
Q 039757 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228 (415)
Q Consensus 149 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (415)
+.+-+..+++....++.. .......-...+...+..|+.+.+..+++.-..- ...+...
T Consensus 91 ~~~~~~~Ll~~~~~~~~~-------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~~ 149 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLD-------------------LEARNYDGLTALHVAVNTECQETVQLLLERGADI--DAVDIKS 149 (241)
T ss_dssp CHHHHHHHHHHSCTTSCC-------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTT
T ss_pred CHHHHHHHHHcCCCcccc-------------------ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc--ccccccC
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC
Q 039757 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 293 (415)
-...+...+..|+.+-+..+++.-.........-.+.+...+..|+.+ +++.+.+.|..|+
T Consensus 150 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.27 E-value=14 Score=27.48 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHH
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQ 52 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~ 52 (415)
..+.++.-|...|+.++|.+.++.+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45678889999999999999999986
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.97 E-value=1.7e+02 Score=26.90 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-------hh-HHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-------VS-WTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
...++|.+++.|...+.++.|..+..+..- |.. .. +-.+...+.-.+++.+|.+.|.....
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345667777777777777777777776643 211 11 12234445566777777777766554
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.80 E-value=1.4e+02 Score=25.79 Aligned_cols=59 Identities=10% Similarity=0.067 Sum_probs=35.7
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhh
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG--CIFSALKLFEDIS 253 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 253 (415)
....++.-|...++.+++...++++.... ........+|......+ .-+.+-.++..+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~---~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE---MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG---GGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 45677888888999999999888875321 13344444454433333 2344555666555
No 303
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=46.07 E-value=77 Score=24.13 Aligned_cols=27 Identities=7% Similarity=-0.220 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhC
Q 039757 134 LVTWNVMITGLVKWGELEYARSLFEEM 160 (415)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (415)
...|+.+...+...|+.++|+..|..-
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 345677777788888888888887653
No 304
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=43.31 E-value=12 Score=22.61 Aligned_cols=26 Identities=23% Similarity=0.013 Sum_probs=18.9
Q ss_pred HhcCchhhHHHHHHHHhhhccccCCC
Q 039757 386 AGVGRYVDAERLRRVMDERNALKFPG 411 (415)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~~~~~~~~ 411 (415)
...|+.+.|+..+-+|...+..|..|
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 34677888888888888777776654
No 305
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.04 E-value=1.6e+02 Score=25.21 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
..++.-|...|+.++|.+.++++..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 4566677777788888777777754
No 306
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=42.75 E-value=25 Score=21.12 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHH-HhcC
Q 039757 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC-VTLS 82 (415)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~-~~~~ 82 (415)
.++|.+.|.+|+. ..++. +..+|...|+.+ ++..
T Consensus 2 ~eEae~aF~~lL~--~~~V~------s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLK--ENQVD------STWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHH--HTTCC------SSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHH--HcCCC------CCCcHHHHHHHhccCCC
Confidence 4689999999986 77877 678999999988 5544
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=41.30 E-value=2e+02 Score=25.94 Aligned_cols=134 Identities=13% Similarity=0.002 Sum_probs=87.0
Q ss_pred hhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHH
Q 039757 16 LTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS 95 (415)
Q Consensus 16 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 95 (415)
..++++.--...|-.-...+...|++++|.++-.... .|+- . +..|.+.+-..=..-|+..-.+.+|..+.
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP----~giL--R---t~~Ti~rFk~vp~~pgq~splL~YF~~Ll 422 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP----KGIL--R---TPDTIRRFQSVPAQPGQTSPLLQYFGILL 422 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG----GGSS--C---SHHHHHHHTTSCCCTTSCCHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc----cccc--c---CHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Confidence 3344455445557777788888999999998876664 3444 4 78887777666666678888899999998
Q ss_pred HcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCC
Q 039757 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR 163 (415)
Q Consensus 96 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 163 (415)
+.| ..+..--.-+++.-...|+.+-.++.+.+=+=.-.+-..-++ +..+..-|+.+|.+...+
T Consensus 423 ~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDlv----k~~d~~LAl~IY~~a~~~ 485 (494)
T 1bpo_A 423 DQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV----KSVDPTLALSVYLRANVP 485 (494)
T ss_dssp HHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHHH----HHHCSHHHHHHHHHHCCC
T ss_pred ccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHhhh----hhcCHHHHHHHHHHcCCc
Confidence 888 455544444677777788888888777654321111122222 344666666666665543
No 308
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=40.52 E-value=1.4e+02 Score=27.45 Aligned_cols=63 Identities=3% Similarity=-0.057 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHHhhcCChHHHH--------HHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 339 TDVVVRRILLGACSFHGNVEMGE--------RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 339 p~~~~~~~l~~~~~~~~~~~~a~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.|......|-.-+...|-.++-+ .++++ ..+.+......|-+.|.+.|++-+|.+++..+-..
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r---~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLME---KAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHH---TCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHh---cCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 45555555666666666554432 22222 22335566777888888899999998888888766
No 309
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.30 E-value=99 Score=23.14 Aligned_cols=54 Identities=9% Similarity=-0.078 Sum_probs=41.2
Q ss_pred hHhcCCHHHHHHHHhcCCCC--Cc--CHHHHHHHHH-H-----HhhcCChHHHHHHHHHHHHcc
Q 039757 318 LGRAGRLEQAEKIALGIPSE--IT--DVVVRRILLG-A-----CSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~--~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~~~ 371 (415)
+...|++=+|-+++++.-.. .| ....|..||+ . ..+.|+...|..++.+....-
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34559999999999887666 34 4457777777 2 346899999999999997744
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.91 E-value=1.1e+02 Score=22.12 Aligned_cols=59 Identities=7% Similarity=-0.058 Sum_probs=38.9
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 120 (415)
..|.. ....-..++..+...+.+-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 15 ~~g~r------~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 15 ETGVR------ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HTTCC------CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCC------CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 66777 334455566666666667788888888877765555555444667777777543
No 311
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=37.05 E-value=2.3e+02 Score=25.37 Aligned_cols=48 Identities=4% Similarity=0.133 Sum_probs=32.5
Q ss_pred chhhHHHHHHhHhhc-------cCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 039757 4 SNNVTTRIHSHLLTT-------NSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQ 53 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~-------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 53 (415)
+.+...++....... .++.-+......++.. ..|+...++.+++.+..
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 445566666666554 3344566667776666 47999999999998873
No 312
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=36.14 E-value=92 Score=20.51 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=27.4
Q ss_pred hcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHH
Q 039757 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360 (415)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 360 (415)
.....++|.++++.+..+ ....|..++.++...+....|
T Consensus 48 ~~t~~~kar~Lld~l~~k--G~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKK--DNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSSHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHc--CHHHHHHHHHHHHHcCHHHHH
Confidence 356677888888877766 667777888877776654433
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.34 E-value=1.7e+02 Score=23.20 Aligned_cols=72 Identities=14% Similarity=-0.049 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Q 039757 275 GKAAVENFERMQKVGLKPNR--VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 352 (415)
.+.|+.+|+.+.+.--.|+. .....++.- ..+..|.+.|.+++|.+++++.-...|+..-...-+....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~---------qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II 158 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKE---------AAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNII 158 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---------HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHH---------HHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 56788888888775321121 122222222 2566688999999999999988777444444444444444
Q ss_pred hcC
Q 039757 353 FHG 355 (415)
Q Consensus 353 ~~~ 355 (415)
+.+
T Consensus 159 ~~K 161 (235)
T 3bu8_A 159 REK 161 (235)
T ss_dssp HHT
T ss_pred hcc
Confidence 433
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.78 E-value=1.2e+02 Score=21.60 Aligned_cols=59 Identities=3% Similarity=0.015 Sum_probs=37.7
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcC-CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 120 (415)
..|.+ -...-..++..+...+ .+-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 11 ~~g~r------~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 11 KAGLK------VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HTTCC------CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HCCCC------CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 66766 3334455666666665 67788888888887765555555444566777766543
No 315
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=34.72 E-value=1.3e+02 Score=22.11 Aligned_cols=105 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcC--CHHHHHHHHhcCCCC--
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG--RLEQAEKIALGIPSE-- 337 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~-- 337 (415)
++.+...+...|-.+ ..|.++.+..-.-+...+..++..|.......-.-+......+ +++.+.+....++..
T Consensus 10 ~~~~~~~l~~~g~LD---~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~ 86 (153)
T 3us6_A 10 WVDYIKSMFMEGFLD---GQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKGSSA 86 (153)
T ss_dssp HHHHHHHHHHTTSCC---HHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchH---HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Q ss_pred ---CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 039757 338 ---ITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 338 ---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 369 (415)
.........-+..+++.|+.+.+...+..+..
T Consensus 87 ~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 87 SIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 316
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=34.69 E-value=1.2e+02 Score=21.21 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 324 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+.+|+.-+++.....++......+++.+... ++.+.++.+...+...-.+.++...++...+.|-.++. +.+..|.
T Consensus 4 ~~~al~~L~e~~~~~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~~~~s~rd~~r~a~~~glI~~~-~~w~~m~ 79 (119)
T 1wty_A 4 LARAVERLKAALERPKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPED-PFWLEML 79 (119)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHTSSCCC-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 3444444443332224556666666665543 56677777766654322688888888999888888776 4555554
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.68 E-value=1.3e+02 Score=21.83 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=36.1
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCCh
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 119 (415)
..|.+ + +..-..++..+...+ +-.|.++++.+.+.+...+..|.=.-++.+...|-+
T Consensus 12 ~~g~r--~----T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 12 QRGYR--L----TPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp TTTCC--C----CHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HcCCC--c----CHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 66777 3 333445555555556 677888888888776555555544455667777654
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.66 E-value=1.7e+02 Score=23.87 Aligned_cols=194 Identities=11% Similarity=-0.043 Sum_probs=95.2
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCC---chhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER---NLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~ 143 (415)
|..-.+.| ...+..|+.+-+ +.+.+.|..++...-.+.+...+..|+.+-+..+++.-..+ |..-++. +..
T Consensus 28 d~~g~t~L-~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~ 101 (285)
T 3kea_A 28 DVHGHSAS-YYAIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA-LYY 101 (285)
T ss_dssp CTTSCCHH-HHHHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCH-HHH
T ss_pred CCCCCCHH-HHHHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcH-HHH
Confidence 43333333 344556665444 44445555444332233455566788888887777754432 2222333 334
Q ss_pred HHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC
Q 039757 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (415)
.+..|+.+-+.-+++.-..++ ..+..-+...+...+..|+.+-+..+++ .|..+
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~----------------------~~~~~g~~t~L~~A~~~~~~~~v~~Ll~----~g~~~ 155 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLM----------------------FYGKTGWKTSFYHAVMLNDVSIVSYFLS----EIPST 155 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGG----------------------GCSSSGGGSHHHHHHHTTCHHHHHHHHT----TSCTT
T ss_pred HHHcCCHHHHHHHHhcCCCCC----------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCcc
Confidence 456777776666666532221 1111111122333345566555444443 33333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
.+...-.+.+...+..|+.+-+.-+++.-... ..+..-++..+...+..|+. ++.+.+.+.|..|+...
T Consensus 156 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 156 FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 23312234455566778887777666553221 11222222223333445553 45666677788877765
No 319
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.86 E-value=1.8e+02 Score=23.29 Aligned_cols=84 Identities=18% Similarity=0.020 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhh---CCC-----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVE---RKN-----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
-++.+....++++|.+++++.... -++ .......+..-.....-.-+..+.+++.. .++......
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~---- 96 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKS---- 96 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHH----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHH----
Confidence 356677788888888888876654 111 12222233333333334444555555532 233322222
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHh
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIAL 332 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (415)
.+..+.+.|+.++|.++|-
T Consensus 97 ----------~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 97 ----------GTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp ----------HHHHHHHTTCHHHHHHHHH
T ss_pred ----------HHHHHHHCCChhHHHHHHH
Confidence 4455777888888887763
No 320
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.76 E-value=1.3e+02 Score=25.32 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhCCCC
Q 039757 137 WNVMITGLVKWGELEYARSLFEEMPCR 163 (415)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 163 (415)
.+.++.-|...|+.++|.+.++++..|
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p 195 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVP 195 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 456777888888888888888888755
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.60 E-value=93 Score=23.23 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=48.9
Q ss_pred hhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc--CCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTH--SHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
..+..-+...++..+++++.. =..++..+...+..-.|.++++.+. .. ++. . +..|.-.-+..+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~---~~~~~~~--i---s~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIK---QAEPDLN--V---GIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHH---HHCGGGC--C---CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH---hhcCCCC--C---CHHHHHHHHHHHHHCCC
Confidence 444555556665555777554 3566777778888999999999998 55 555 4 66666666777777775
Q ss_pred Cc
Q 039757 84 PN 85 (415)
Q Consensus 84 ~~ 85 (415)
+.
T Consensus 85 v~ 86 (162)
T 4ets_A 85 VT 86 (162)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 322
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.52 E-value=2.2e+02 Score=24.01 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=36.9
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhh
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC--IFSALKLFEDIS 253 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~ 253 (415)
....++.-|...|+.++|...++++.... ........++......++ -+.+-.++..+.
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~p~---~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE---MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG---GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcc---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45677888888999999999998875332 234444455554444443 334555666664
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.50 E-value=1.4e+02 Score=21.82 Aligned_cols=59 Identities=7% Similarity=0.025 Sum_probs=39.7
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcC-CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 120 (415)
..|.. + +..-..++..+...+ .+-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 10 ~~g~r--~----T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 10 DAGLK--V----TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HTTCC--C----CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCC--C----CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 66777 3 334455666666666 67789999999988765556555444667777777654
No 324
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.84 E-value=3.9e+02 Score=26.79 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=59.6
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------------------
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-------------------- 255 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------- 255 (415)
++..|...+..+-+.++.... |.++..--.+..+|...|++++|.+.|+++-..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 455566666666665544333 335555557888999999999999999875421
Q ss_pred -CCC---hhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 256 -RKN---LVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 256 -~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.++ ..-|..++..+-+.+.++-+.++-+..++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 011 124777888888888888888888777764
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.38 E-value=1.5e+02 Score=21.71 Aligned_cols=59 Identities=7% Similarity=0.013 Sum_probs=38.7
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 120 (415)
..|.. .+..-..++..+...+.+-.|.++++.+.+.+...+..|.--.++.+...|-+.
T Consensus 20 ~~g~r------~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 20 KNGLK------NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HCC--------CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCC------CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 67777 344455667777777777889999999887765555555444667777777543
No 326
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.55 E-value=1.1e+02 Score=20.08 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHH
Q 039757 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155 (415)
Q Consensus 87 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 155 (415)
...+++.+.+.|+- +..-+..+-. .....++|.++++.+.......|..++.++...|...-|..
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~ 88 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAAL 88 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHH
Confidence 56788888887753 3444433322 35678899999999988888899999999888776554443
No 327
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.38 E-value=1.9e+02 Score=22.84 Aligned_cols=203 Identities=10% Similarity=-0.014 Sum_probs=93.2
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCC------CHHHHHHHHHHHHhc---CCHHHHHHHHHHhhhhC-----------
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAF------DIRVSNCLIDTYAKC---GCIFSALKLFEDISVER----------- 256 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~----------- 256 (415)
+...+..|+.+.+..+++.+.+.|..+. +..-.+.|. ..+.. |+.+-+..+++.-....
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 4445677888888888887777665432 222333343 33444 77776666665533311
Q ss_pred -CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc-chHHHHHHhHhcCCHHHHHHHHhc-
Q 039757 257 -KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-HYGCLVDMLGRAGRLEQAEKIALG- 333 (415)
Q Consensus 257 -~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~- 333 (415)
.|..-++.|. ..+..|+.+- ++.+.+.|..++.......+.......+ .-...+...+..|+.+-+.-+++.
T Consensus 85 ~~d~~g~t~L~-~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 85 DEFYQGHSALH-IAIEKRSLQC----VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp STTTTTCCHHH-HHHHTTCHHH----HHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccCCCHHH-HHHHcCCHHH----HHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 1122233343 3445666554 4445555666554321000000000000 000123334567888877777772
Q ss_pred --CCCC-CcCHHHHHHHHHHHhh-cCChH---HHHHHHHHHHHc-----------ccCCCccHHHHHHHHHhcCchhhHH
Q 039757 334 --IPSE-ITDVVVRRILLGACSF-HGNVE---MGERVTRKVLEM-----------ERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 334 --~~~~-~p~~~~~~~l~~~~~~-~~~~~---~a~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
-... ..+..-++.|..++.. .++.+ ...++++.+.+. ...+..-... +..-.+.|+.+-+.
T Consensus 160 ~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tp-L~~A~~~g~~~~v~ 238 (256)
T 2etb_A 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP-LKLAAKEGKIEIFR 238 (256)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCH-HHHHHHTTCHHHHH
T ss_pred ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCH-HHHHHHhCCHHHHH
Confidence 2211 2344444455554432 45554 111233333332 2222222222 33345567777777
Q ss_pred HHHHHHhhhcc
Q 039757 396 RLRRVMDERNA 406 (415)
Q Consensus 396 ~~~~~m~~~~~ 406 (415)
-+++.-.....
T Consensus 239 ~Ll~~g~~~~~ 249 (256)
T 2etb_A 239 HILQREFSGAA 249 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhCCCCCCC
Confidence 66665544433
No 328
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.21 E-value=1e+02 Score=20.58 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHH
Q 039757 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 240 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 279 (415)
...+.|.++++.+.. .....|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~--rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLET--RGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTT--SCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHH--cChHHHHHHHHHHHHcCcHHHHH
Confidence 467778888887777 44556777888777767655444
No 329
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=30.80 E-value=83 Score=19.31 Aligned_cols=52 Identities=12% Similarity=-0.131 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhH
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 394 (415)
.++-++..++...-.++++-.+.++.+.|.-+...|..-++.+++..-+..|
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Ra 55 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRW 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777789999999999999888888888888888776544433
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.67 E-value=1e+02 Score=24.70 Aligned_cols=121 Identities=13% Similarity=-0.019 Sum_probs=68.0
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC----chhHHHHHHHHH--hcCCCchHHHHHHHHHHcCC------
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD----SFTYSFLIRTCV--TLSYPNLGTQLHAVISKVGF------ 99 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~g~------ 99 (415)
+...++.|+.+....+++.+. ..+.. +...+ ..-.+.|..+.. +.|+.+-+..+++.-...+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~---~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLL---THKKR--LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHH---HHTCC--TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHH---hcCCC--cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 445566888888888888777 55555 41001 223344444432 66888877777776543211
Q ss_pred ---C-CchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhh----------------HHHHHHHHHhhCCHHHHHHHHh
Q 039757 100 ---Q-SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVT----------------WNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 100 ---~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------------~~~li~~~~~~g~~~~a~~~~~ 158 (415)
. .|..-.+ .+...+..|+.+-+..+++.-..++... -.+.+...+..|+.+-+.-+++
T Consensus 84 ~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 84 SPFRDVYYRGQT-ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CCBCCSSEESBC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccCCCC-HHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 0 0112222 3344556788888887777544432221 2234445566788777777776
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.91 E-value=77 Score=21.21 Aligned_cols=64 Identities=17% Similarity=0.068 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHH
Q 039757 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 89 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 154 (415)
.+++.+.+.|+- +......+ .........+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I-~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDI-QRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHH-HTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHH-HhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 466666666643 33333221 11001146777888888888777778888888887666655554
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.82 E-value=1.4e+02 Score=21.20 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh
Q 039757 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120 (415)
Q Consensus 72 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 120 (415)
..++..+...+.+-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 4456666666777889999999988765556656545667788877543
No 333
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.38 E-value=1.7e+02 Score=22.80 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=20.0
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
..+++.|+-++.+|++.|-.|....=..++.+...
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 34666666666666666666655554544444333
No 334
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.14 E-value=84 Score=24.49 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=18.0
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
..+++.|+-++.+|.+.| .|....=..++.+
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~A 57 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIG 57 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 356666676777777666 5554444444444
No 335
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=28.03 E-value=81 Score=25.10 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=63.6
Q ss_pred CHHHHHHHHhcCCCC----Cc-----CHHHHHHHHHHHhhcC---------ChHHHHHHHHHHHHcccC--CCccHHHHH
Q 039757 323 RLEQAEKIALGIPSE----IT-----DVVVRRILLGACSFHG---------NVEMGERVTRKVLEMERG--NGGDYVLMY 382 (415)
Q Consensus 323 ~~~~A~~~~~~~~~~----~p-----~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 382 (415)
..+.|..++.+|--. .| ...-+..+..+|.+.| +.+.-.++++..++.+.+ =+..|..++
T Consensus 146 ~vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssII 225 (249)
T 3m0z_A 146 PLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSII 225 (249)
T ss_dssp EHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGB
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceec
Confidence 368899999988765 33 5567889999999987 557778888888888877 567788888
Q ss_pred HHHHhcCchhhHHHHHHHHhh
Q 039757 383 NILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+--...-+.+++.+++..+.+
T Consensus 226 Dk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 226 DKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp CTTTCCBCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 776667788889888887764
No 336
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.76 E-value=2.5e+02 Score=22.89 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=43.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHcCCCCchh---hHHHHHHHHHcCCChhHHHHHhcccCCC---chhhHHHHHHHHHhh
Q 039757 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVY---VNTALVNMYVSLGFLKDSSKLFDELPER---NLVTWNVMITGLVKW 147 (415)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~ 147 (415)
.+...+..|+.+-+ +.+.+.|..++.. -.+ .+...+..|+.+-+..+++.-..+ +..-+.+.+...+..
T Consensus 65 ~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~ 139 (285)
T 3kea_A 65 PLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML 139 (285)
T ss_dssp HHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT
T ss_pred HHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Confidence 34455566665443 3344455544322 222 334445677777777666653332 222223455555667
Q ss_pred CCHHHHHHHHhhCC
Q 039757 148 GELEYARSLFEEMP 161 (415)
Q Consensus 148 g~~~~a~~~~~~m~ 161 (415)
|+.+-+.-+++.-.
T Consensus 140 ~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 140 NDVSIVSYFLSEIP 153 (285)
T ss_dssp TCHHHHHHHHTTSC
T ss_pred CCHHHHHHHHhCCC
Confidence 77776666666543
No 337
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.44 E-value=2.4e+02 Score=22.72 Aligned_cols=48 Identities=6% Similarity=-0.056 Sum_probs=26.2
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhC
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 148 (415)
++..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 455555556666666665444444444444566555555555555555
No 338
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.40 E-value=1.1e+02 Score=24.11 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=22.8
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
..+++.|+-++.+|++.|-.|....=..++.+...
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 45777777777777777776666655555544433
No 339
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=26.83 E-value=1.6e+02 Score=20.46 Aligned_cols=64 Identities=8% Similarity=-0.053 Sum_probs=33.9
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
++..+-...+.++.+.|+.+....+.+.+.++|..+-...+.++.+.|+.+....+.+.+..++
T Consensus 54 ~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~ 117 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGT 117 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCC
Confidence 4555555566666666654443334444444666666666666666665443333333343344
No 340
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=26.79 E-value=2e+02 Score=21.58 Aligned_cols=112 Identities=7% Similarity=-0.136 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 353 (415)
..+-|..+++.+...|-.|+....... -..-++..++++.--.... --...++.++..+..
T Consensus 52 E~~HA~~l~~~i~~~gg~~~l~~i~~p-----------------~~~~~~~~e~le~aL~~E~--~v~~~~~~l~~~a~~ 112 (173)
T 1s3q_A 52 ELMHAMKMFDFVSERGGRVKLYAVEEP-----------------PSEWDSPLAAFEHVYEHEV--NVTKRIHELVEMAMQ 112 (173)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCBCCC-----------------CCCCSSHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCCC-----------------CCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 456788899999888877765432100 0000122222222111111 133356666666666
Q ss_pred cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+|+.. ..+++.+++...........++..+.+.|.-..+.-+|++-....
T Consensus 113 ~~D~~t-~~fle~~l~eq~e~~~~l~~~l~~l~~~g~~~~g~~~~D~~l~~~ 163 (173)
T 1s3q_A 113 EKDFAT-YNFLQWYVAEQVEEEASALDIVEKLRLIGEDKRALLFLDKELSLR 163 (173)
T ss_dssp HTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred cCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHhHHhHHHhhc
Confidence 666544 344444554444444455556666666665455666777655444
No 341
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiat midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=26.52 E-value=2.4e+02 Score=23.73 Aligned_cols=27 Identities=0% Similarity=0.049 Sum_probs=15.9
Q ss_pred HHHHhhCC-CCChhHHHHHHHHHHhccC
Q 039757 154 RSLFEEMP-CRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 154 ~~~~~~m~-~~~~~~~~~li~~~~~~~~ 180 (415)
.++++++- +|+...||.++..-...|+
T Consensus 83 e~V~~~VG~EPSG~~FNSi~~Le~~~g~ 110 (310)
T 1u60_A 83 QAVQDKIGADPTGLPFNSVIALELHGGK 110 (310)
T ss_dssp HHHHHHTCSCCCSSCTTCHHHHHHTTTC
T ss_pred HHHHHHhCCCCCCCCCcchhhhhccCCC
Confidence 35666664 5777777777655444443
No 342
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.47 E-value=1.3e+02 Score=19.03 Aligned_cols=58 Identities=7% Similarity=0.011 Sum_probs=38.4
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcC-CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCCh
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 119 (415)
..|.. . + ..-..++..+...+ .+-.+.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 10 ~~g~~--~---t-~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 10 KAGLK--V---T-LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HTTCC--C---C-HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HcCCC--c---C-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 66766 3 3 34455666666654 5677888988887776555666666677777777654
No 343
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.89 E-value=1.3e+02 Score=21.57 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh
Q 039757 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120 (415)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 120 (415)
.-..++..+...+.+-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 15 qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 15 QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345566777777777889999999988776666655444667777777654
No 344
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.82 E-value=1.3e+02 Score=21.17 Aligned_cols=43 Identities=14% Similarity=-0.108 Sum_probs=30.4
Q ss_pred HHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 039757 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ 52 (415)
Q Consensus 10 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 52 (415)
.+.-.....|.+.|++..--.-|......++++.|..+...+.
T Consensus 46 ~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 46 ALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333344455577777765555666777899999999998887
No 345
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.55 E-value=5.1e+02 Score=25.80 Aligned_cols=164 Identities=7% Similarity=-0.084 Sum_probs=87.0
Q ss_pred HHhHHHHHhhcCCh---hHHHHHHhhhhhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHH
Q 039757 193 ILAVLPAIWQNGAV---RNCQLIHGYGEKRGF-NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268 (415)
Q Consensus 193 ~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~ 268 (415)
-..++...|..|.. +.|.+.|+.....+- .+..+.........-.+.|..++-..+++..... .+..--..++.+
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~-~~~~ek~~ll~a 767 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA-QLVNEADKLRSA 767 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 34455666666654 456677777665421 1112223333333444567666655666665552 344556778888
Q ss_pred HHccCchHHHHHHHHHHHhcC-CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH----hcCCCC-CcCHH
Q 039757 269 FAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA----LGIPSE-ITDVV 342 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~-~p~~~ 342 (415)
++...+.+...++++...... +++... ..++.+. .....-.+.|.+.+ +.+.++ .....
T Consensus 768 L~~~~d~~~l~~~L~~~l~~~~ir~qd~--~~~~~~v-------------~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~ 832 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTLNPDLIRKQDA--TSTINSI-------------ASNVIGQPLAWDFVQSNWKKLFQDYGGGSF 832 (909)
T ss_dssp HTTCCCHHHHHHHHHHTTCTTTSCGGGH--HHHHHHH-------------HHSTTHHHHHHHHHHHHCTTTTTSSSSCCC
T ss_pred hCCCCCHHHHHHHHHHHhCCCCCchhhH--HHHHHHH-------------hcChHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 888888888888887765432 333322 2222221 11111234444544 344444 23344
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.+..++......-..++-.+-++...+..+
T Consensus 833 ~~~~~i~~~~~~~~t~~~~~~~~~f~~~~~ 862 (909)
T 4fke_A 833 SFSNLIQGVTRRFSSEFELQQLEQFKKNNM 862 (909)
T ss_dssp CHHHHHHHHHTTCCSHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Confidence 667777776665555555555565555443
No 346
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.81 E-value=2.4e+02 Score=21.72 Aligned_cols=80 Identities=11% Similarity=0.023 Sum_probs=35.2
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhh---HHHHHHHHHcCCChhHHHHHhcccCCC---chhhHHHHHHHHHhhC
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYV---NTALVNMYVSLGFLKDSSKLFDELPER---NLVTWNVMITGLVKWG 148 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 148 (415)
+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ +...++ .+...+..|
T Consensus 46 L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~ 120 (240)
T 3eu9_A 46 LHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS-CIHLAAQFG 120 (240)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTT
T ss_pred HHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcC
Confidence 34445556543 3444444443332111 112334445566666666666543222 222222 233344556
Q ss_pred CHHHHHHHHhh
Q 039757 149 ELEYARSLFEE 159 (415)
Q Consensus 149 ~~~~a~~~~~~ 159 (415)
+.+-+..+++.
T Consensus 121 ~~~~~~~Ll~~ 131 (240)
T 3eu9_A 121 HTSIVAYLIAK 131 (240)
T ss_dssp CHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 66555555543
No 347
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative, riken structural genomics/proteomics initiative, RSGI; 2.07A {Geobacillus kaustophilus}
Probab=24.78 E-value=3.1e+02 Score=23.05 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=6.1
Q ss_pred HHHHhhCC-CCChhHHHHHHHHHHhcc
Q 039757 154 RSLFEEMP-CRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 154 ~~~~~~m~-~~~~~~~~~li~~~~~~~ 179 (415)
.+++++.- +|+...||.++..-...|
T Consensus 82 e~V~~~VG~EPSG~~FNsi~~Le~~~g 108 (308)
T 2pby_A 82 DEVFHKVGMEPTDYPFHSIAKLEEKPA 108 (308)
T ss_dssp HHHHHHBCSCC----------------
T ss_pred HHHHHHhCCCCCCCCCcchhhhhccCC
Confidence 45666665 577777777764433334
No 348
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.77 E-value=1.7e+02 Score=21.31 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccC-CCccHHHHHHHHHhcCch
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERG-NGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 391 (415)
--..++..+...+..-.|.++++.+.+.++. +..|...-+..+...|-.
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3445566666666778889999998887765 555655666666666643
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.58 E-value=2.2e+02 Score=21.24 Aligned_cols=59 Identities=7% Similarity=-0.182 Sum_probs=39.9
Q ss_pred HHccCchHHHHHHHHHHHhcCCCC--ChhhHHHHHH-HHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKP--NRVTFLSVLN-ACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
+...|++-+|.++|+..-...-.| +...|..+|+ .. ......+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lA---------vAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAA---------GAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHH---------HHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH---------HHHHHHHhCCHHHHHHHHHHHHH
Confidence 344599999999999987765555 4555666655 31 33344678999988888865543
No 350
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=24.58 E-value=66 Score=21.13 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
+++|++...-|. ..... |.+.|..|-.-++..+-..|-+..+..+..+-.+.|..|
T Consensus 13 IdKALDFI~~M~---tSas~--P~sMdESTAKGifKyL~elGvPas~~dv~aRg~qegWn~ 68 (115)
T 2es9_A 13 IEKALDFIGGMN---TSASV--PHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNP 68 (115)
T ss_dssp HHHHHHHHHTSC---TTCSS--CCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhcccc---cCCCC--CCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCCh
Confidence 466777777775 55444 655566666667777777777777777777777766554
No 351
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.91 E-value=1.7e+02 Score=21.12 Aligned_cols=41 Identities=10% Similarity=-0.009 Sum_probs=22.9
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 302 (415)
-..++..+...+..-.|.++++.+.+.+...+..|..-.|.
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~ 64 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLR 64 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 34445555555555667777777766655555555444333
No 352
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=23.89 E-value=2.4e+02 Score=21.46 Aligned_cols=108 Identities=7% Similarity=-0.123 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHh
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACS 352 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~ 352 (415)
..+-|..+++.+...|-.|....... - ...+....++++..... .--...+..++..+.
T Consensus 59 E~~HA~~l~~~i~~~Gg~~~l~~i~~------------------p--~~~~~~~~e~le~aL~~Ek~v~~~l~~l~~la~ 118 (184)
T 3qz3_A 59 EMQHMQRLFTYVSETGALPILGAIAA------------------P--RHDFASLGEVFRETYQHEQKITQQINKLAHVAF 118 (184)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCBCC------------------C--CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccCCCCC------------------c--ccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999888887776432110 0 01111222222211111 012234555666666
Q ss_pred hcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
..+|+.. ..+++..++...........++.-+.+.|.-..+.-+|++-.
T Consensus 119 ~~~D~~t-~~fLe~fl~EQve~~~~l~~~l~~l~~~g~~~~~~~~~D~~l 167 (184)
T 3qz3_A 119 TSQDYST-FNFLQWYVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDL 167 (184)
T ss_dssp HTTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HCCCHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHHhHHH
Confidence 6666544 344445555444444445555555555555444555555543
No 353
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.69 E-value=1e+02 Score=20.47 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHH
Q 039757 343 VRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
.+..-...+.+.|++++|++..+.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHH
Confidence 344455556666666666665554
No 354
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=23.62 E-value=83 Score=20.10 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=26.5
Q ss_pred HHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
.++.++...+|++.||+-+...+-+..-..+++.+.+++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 455555555678888888888776666666666666554
No 355
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.05 E-value=1.1e+02 Score=21.95 Aligned_cols=49 Identities=8% Similarity=-0.049 Sum_probs=37.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCc
Q 039757 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85 (415)
Q Consensus 29 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 85 (415)
..++..+...++.-.|.++++.+. ..++. . +..|....+..+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~---~~~~~--i---s~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLK---HKGDA--V---GLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHH---HTTCC--C---CHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHH---HhCCC--C---CHHHHHHHHHHHHHCCCEE
Confidence 456777777778889999999998 66665 5 7777777777788777543
No 356
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=22.31 E-value=1.6e+02 Score=19.40 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 357 VEMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
++.|+.++++++.....++..|...+..+.
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~ 39 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILH 39 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 467777777777776666667766665554
No 357
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=22.08 E-value=2e+02 Score=20.43 Aligned_cols=15 Identities=20% Similarity=-0.091 Sum_probs=6.8
Q ss_pred hcCChHHHHHHHHHH
Q 039757 353 FHGNVEMGERVTRKV 367 (415)
Q Consensus 353 ~~~~~~~a~~~~~~~ 367 (415)
..+|.+...++++.+
T Consensus 52 ~~~n~~~m~~~L~pL 66 (126)
T 2npu_A 52 GERNVKGMFEVLEPL 66 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 344444444444443
No 358
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=21.88 E-value=1.3e+02 Score=17.45 Aligned_cols=40 Identities=10% Similarity=-0.064 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcc
Q 039757 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128 (415)
Q Consensus 87 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 128 (415)
..+.+..|...|+.-+..-.+.|+. .+.|++..|+.+++.
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~--~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQ--TKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHH--HTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCccccHHHHHHH--HccCCHHHHHHHhhh
Confidence 4566777888888755544455554 567888888887754
No 359
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.61 E-value=1.6e+02 Score=21.27 Aligned_cols=60 Identities=7% Similarity=-0.100 Sum_probs=38.8
Q ss_pred HhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC
Q 039757 15 LLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84 (415)
Q Consensus 15 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 84 (415)
.++..+++++..=- .++..+...+ .-.|.++++.+. ..++. . +..|.-.-+..+...|-+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~---~~~~~--i---s~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVR---KTASG--I---NISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHH---TTCTT--C---CHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHH---hhCCC--C---CHhHHHHHHHHHHHCCcE
Confidence 34444467665532 3444555555 778999999998 66655 5 666766667777777744
No 360
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.38 E-value=5.4e+02 Score=24.52 Aligned_cols=41 Identities=10% Similarity=0.188 Sum_probs=25.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHh
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVK 146 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 146 (415)
+|- +|-.|.|+|++++|.++.++... .-...+-..+..|+.
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 564 66777888888888888877643 111355566666653
No 361
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=21.32 E-value=83 Score=25.36 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=62.3
Q ss_pred CHHHHHHHHhcCCCC----Cc-----CHHHHHHHHHHHhhcC---------ChHHHHHHHHHHHHcccC--CCccHHHHH
Q 039757 323 RLEQAEKIALGIPSE----IT-----DVVVRRILLGACSFHG---------NVEMGERVTRKVLEMERG--NGGDYVLMY 382 (415)
Q Consensus 323 ~~~~A~~~~~~~~~~----~p-----~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 382 (415)
..+.|..++.+|--. .| ...-+..+..+|.+.| +.+...++++..++.+.+ =+..|..++
T Consensus 169 ~vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSII 248 (275)
T 3m6y_A 169 PIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSII 248 (275)
T ss_dssp EHHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGB
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceec
Confidence 367888888887655 33 5567889999999887 557778888888888877 567788888
Q ss_pred HHHHhcCchhhHHHHHHHHhh
Q 039757 383 NILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+--...-+.+++.+++..+++
T Consensus 249 Dk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 249 DKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp CTTTCCBCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 766666788888888887754
No 362
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.93 E-value=1.3e+02 Score=21.27 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=34.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC
Q 039757 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84 (415)
Q Consensus 30 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 84 (415)
.++..+...+..-.|.++++.+. ..++. . +..|....+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~---~~~~~--i---s~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELR---RRGEN--I---GLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHH---HTTCC--C---CHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHH---HhCCC--C---CHhhHHHHHHHHHHCCCE
Confidence 45666667778889999999998 66555 5 666766777777777744
No 363
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.76 E-value=1.3e+02 Score=23.38 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=14.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
.+-.|.+.|.+++|.++|++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 344566777777777777775444
No 364
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.60 E-value=2.9e+02 Score=21.09 Aligned_cols=122 Identities=11% Similarity=-0.016 Sum_probs=64.9
Q ss_pred hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHH
Q 039757 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID-TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 279 (415)
.+-.+++.+.-+-..+... ..-|..|+. .+--.|.+.++.-++..... .+..-|.. -+|-+.+++.+|.
T Consensus 13 ~kY~dYdt~~fLsa~L~~~------~~eY~lL~~I~LyyngEY~R~Lf~L~~lNT--~Ts~YYk~--LCy~klKdYkkA~ 82 (242)
T 3kae_A 13 IRYRDYETAIFLAACLLPC------KPEYRMLMSIVLYLNGEYTRALFHLHKLNT--CTSKYYES--LCYKKKKDYKKAI 82 (242)
T ss_dssp HHTTCHHHHHHHHHHHC----------CTHHHHHHHHHHTTCHHHHHHHHHTCCB--HHHHHHHH--HHHHHTTCHHHHH
T ss_pred hhcccccHHHHHHHHHccC------ChHHHhhhhhhhhhcchHhHHHHHHHhcch--HHHHHHHH--HHHHHHHHHHHHH
Confidence 3445555554444333322 113333332 34457888888777755422 11122333 3567788999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHccCCc---chHHHHHHhHhcCCHHHHHHHHh
Q 039757 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGL---HYGCLVDMLGRAGRLEQAEKIAL 332 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~ 332 (415)
..++.+....+..|+..=..+=.-+...++ .|+.+...+.+.|+.++|+..+.
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 999998865554331110000000111122 45567778899999999988764
No 365
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=20.31 E-value=1.9e+02 Score=19.06 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcCChHHH---HHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 343 VRRILLGACSFHGNVEMG---ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
..-.+..-+.-.+..+.+ ..+|..+.+.+.-++.-...|...+.+.|+.+-+.++.+.
T Consensus 22 ~LKFLc~d~i~~~kle~i~s~~dlf~~Le~~~~l~~~nl~~L~elL~~I~R~DLl~~v~~~ 82 (91)
T 1a1w_A 22 ELKYLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHTELLRELLASLRRHDLLRRVDDF 82 (91)
T ss_dssp HHHHHHHHHTCSHHHHHCSSSHHHHHHHHHTTSCBTTBCHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHhHhhccchhhhccCCHHHHHHHHHHcCCCCcchHHHHHHHHHHCCHHHHHHHHHHh
Confidence 333344444444444544 9999999999988777788888999999999988777654
No 366
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=20.27 E-value=1e+02 Score=15.76 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=16.7
Q ss_pred HHHHHHHhcCchhhHHHHHHHHh
Q 039757 380 LMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
..+..|...|..++|..+-.+|.
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 45667777888888887766665
Done!