Query 039772
Match_columns 608
No_of_seqs 374 out of 3815
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 13:01:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.1E-70 6.7E-75 613.4 30.9 442 129-589 161-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.6E-52 1.2E-56 489.8 35.4 507 36-589 85-712 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-36 2.3E-41 309.2 11.5 234 131-370 1-283 (287)
4 KOG0617 Ras suppressor protein 99.4 5.6E-15 1.2E-19 129.9 -5.4 157 436-602 32-195 (264)
5 KOG0444 Cytoskeletal regulator 99.4 1.2E-14 2.5E-19 150.6 -4.3 147 458-608 196-344 (1255)
6 KOG0444 Cytoskeletal regulator 99.4 6.3E-14 1.4E-18 145.2 -0.7 128 437-568 55-184 (1255)
7 KOG0617 Ras suppressor protein 99.3 7.1E-14 1.5E-18 123.0 -4.6 115 458-580 78-195 (264)
8 PLN00113 leucine-rich repeat r 99.2 1.5E-11 3.4E-16 145.7 9.7 104 458-566 139-245 (968)
9 PLN00113 leucine-rich repeat r 99.2 4.3E-11 9.3E-16 141.9 9.8 164 437-607 164-336 (968)
10 KOG0472 Leucine-rich repeat pr 98.9 5E-11 1.1E-15 118.4 -4.2 123 458-589 182-305 (565)
11 PRK04841 transcriptional regul 98.9 5.7E-08 1.2E-12 114.6 19.6 276 117-419 5-333 (903)
12 KOG0472 Leucine-rich repeat pr 98.9 5.4E-10 1.2E-14 111.1 0.9 143 439-589 390-536 (565)
13 KOG4194 Membrane glycoprotein 98.8 5.8E-10 1.2E-14 115.7 0.5 148 436-589 268-424 (873)
14 PLN03210 Resistant to P. syrin 98.8 1E-08 2.2E-13 122.6 11.1 142 436-589 588-733 (1153)
15 KOG4658 Apoptotic ATPase [Sign 98.8 6.9E-09 1.5E-13 118.5 5.8 141 458-607 522-672 (889)
16 PRK00411 cdc6 cell division co 98.8 7.7E-08 1.7E-12 102.2 13.3 142 121-267 25-182 (394)
17 TIGR02928 orc1/cdc6 family rep 98.7 2.6E-07 5.7E-12 97.0 14.8 119 121-242 10-141 (365)
18 KOG0618 Serine/threonine phosp 98.7 2.6E-09 5.7E-14 116.6 -0.8 125 458-589 358-484 (1081)
19 KOG0618 Serine/threonine phosp 98.6 3.5E-09 7.5E-14 115.6 -1.1 149 435-589 308-460 (1081)
20 PRK15370 E3 ubiquitin-protein 98.6 8E-08 1.7E-12 108.2 7.3 137 436-589 198-354 (754)
21 PF05729 NACHT: NACHT domain 98.6 1.4E-07 2.9E-12 87.0 7.7 108 150-267 1-129 (166)
22 PF13401 AAA_22: AAA domain; P 98.6 2.9E-07 6.4E-12 81.3 9.4 111 149-267 4-125 (131)
23 PF14580 LRR_9: Leucine-rich r 98.6 8.7E-08 1.9E-12 88.2 5.8 124 458-589 18-148 (175)
24 COG2909 MalT ATP-dependent tra 98.6 1.4E-06 3E-11 95.5 15.7 281 117-420 10-340 (894)
25 PRK15370 E3 ubiquitin-protein 98.5 3.2E-07 7E-12 103.3 9.5 124 438-578 179-303 (754)
26 cd00009 AAA The AAA+ (ATPases 98.5 1.4E-06 3.1E-11 78.0 11.9 120 129-267 1-129 (151)
27 KOG1259 Nischarin, modulator o 98.5 2.4E-08 5.3E-13 95.9 0.1 122 460-589 285-407 (490)
28 PLN03150 hypothetical protein; 98.5 3.3E-07 7.1E-12 102.5 8.5 100 488-589 419-523 (623)
29 TIGR03015 pepcterm_ATPase puta 98.5 2.6E-06 5.7E-11 85.4 14.3 117 126-250 20-145 (269)
30 KOG4194 Membrane glycoprotein 98.5 2.2E-07 4.8E-12 96.9 6.4 106 458-567 77-183 (873)
31 PF14580 LRR_9: Leucine-rich r 98.5 1.9E-07 4.1E-12 86.0 5.1 78 488-568 20-99 (175)
32 PRK15387 E3 ubiquitin-protein 98.5 4.1E-07 9E-12 102.0 8.6 42 486-527 301-359 (788)
33 KOG0532 Leucine-rich repeat (L 98.4 8.8E-09 1.9E-13 107.0 -4.3 123 458-590 120-243 (722)
34 PF13855 LRR_8: Leucine rich r 98.4 1.2E-07 2.7E-12 71.5 3.1 57 511-567 2-59 (61)
35 PF13191 AAA_16: AAA ATPase do 98.4 5.8E-07 1.3E-11 84.5 8.4 50 127-178 1-51 (185)
36 PF13855 LRR_8: Leucine rich r 98.4 1.9E-07 4.2E-12 70.4 3.2 60 487-546 1-61 (61)
37 cd01128 rho_factor Transcripti 98.4 4.2E-07 9.1E-12 89.0 6.3 93 149-242 16-115 (249)
38 PRK15387 E3 ubiquitin-protein 98.4 2.6E-07 5.7E-12 103.6 4.9 131 437-589 322-453 (788)
39 KOG0532 Leucine-rich repeat (L 98.4 5.6E-08 1.2E-12 101.1 -0.6 141 439-589 123-268 (722)
40 PLN03150 hypothetical protein; 98.4 9.4E-07 2E-11 98.8 8.4 104 460-568 419-526 (623)
41 PF01637 Arch_ATPase: Archaeal 98.3 1.6E-06 3.5E-11 84.6 9.2 59 128-190 1-59 (234)
42 PF13173 AAA_14: AAA domain 98.3 1.4E-06 3.1E-11 76.6 6.9 96 149-267 2-98 (128)
43 COG4886 Leucine-rich repeat (L 98.3 5.3E-07 1.1E-11 95.8 4.8 122 460-589 141-263 (394)
44 PRK09376 rho transcription ter 98.3 9.5E-07 2E-11 90.2 5.6 92 150-242 170-268 (416)
45 PTZ00202 tuzin; Provisional 98.3 1.2E-05 2.7E-10 82.6 13.0 79 120-204 256-335 (550)
46 cd00116 LRR_RI Leucine-rich re 98.2 6.9E-07 1.5E-11 91.8 3.8 88 459-547 137-234 (319)
47 COG4886 Leucine-rich repeat (L 98.2 8.1E-07 1.8E-11 94.4 3.4 141 458-607 115-259 (394)
48 TIGR02903 spore_lon_C ATP-depe 98.2 2.2E-05 4.9E-10 87.3 14.6 143 122-267 150-333 (615)
49 TIGR00635 ruvB Holliday juncti 98.2 2.4E-05 5.2E-10 80.0 13.1 51 126-178 4-57 (305)
50 PTZ00112 origin recognition co 98.2 2.2E-05 4.8E-10 87.0 13.1 115 123-242 752-881 (1164)
51 KOG1259 Nischarin, modulator o 98.1 6E-07 1.3E-11 86.5 0.8 121 439-568 286-410 (490)
52 PF12799 LRR_4: Leucine Rich r 98.1 3.1E-06 6.6E-11 58.8 3.7 40 511-551 2-41 (44)
53 PRK00080 ruvB Holliday junctio 98.1 4.2E-05 9E-10 79.0 13.4 54 122-177 21-77 (328)
54 PRK13342 recombination factor 98.1 1.6E-05 3.5E-10 84.6 9.8 52 124-179 10-64 (413)
55 PRK06893 DNA replication initi 98.0 1E-05 2.2E-10 78.9 7.3 37 149-187 39-75 (229)
56 COG1474 CDC6 Cdc6-related prot 98.0 6.5E-05 1.4E-09 77.9 13.4 115 122-242 13-135 (366)
57 TIGR00767 rho transcription te 98.0 9.2E-06 2E-10 83.5 6.9 91 150-242 169-267 (415)
58 cd00116 LRR_RI Leucine-rich re 98.0 4.9E-06 1.1E-10 85.5 4.7 153 436-589 80-258 (319)
59 PRK12402 replication factor C 98.0 4.1E-05 8.9E-10 79.4 10.6 47 123-171 12-58 (337)
60 KOG4237 Extracellular matrix p 98.0 1.3E-06 2.7E-11 87.5 -0.7 131 453-589 61-196 (498)
61 PRK14963 DNA polymerase III su 97.9 1.5E-05 3.2E-10 86.2 6.1 137 123-267 11-155 (504)
62 COG3903 Predicted ATPase [Gene 97.9 5.2E-06 1.1E-10 84.4 2.0 249 148-420 13-316 (414)
63 PRK04195 replication factor C 97.9 5.6E-05 1.2E-09 82.2 10.0 121 122-267 10-139 (482)
64 PF12799 LRR_4: Leucine Rich r 97.8 1.4E-05 2.9E-10 55.6 2.9 41 487-527 1-41 (44)
65 TIGR01242 26Sp45 26S proteasom 97.8 4.3E-05 9.3E-10 80.1 8.0 55 123-179 119-184 (364)
66 TIGR03420 DnaA_homol_Hda DnaA 97.8 4.8E-05 1E-09 74.1 7.7 106 131-267 22-132 (226)
67 PLN03025 replication factor C 97.8 0.00011 2.4E-09 75.5 10.4 125 122-267 9-138 (319)
68 PRK00440 rfc replication facto 97.8 0.00015 3.2E-09 74.6 11.0 122 123-267 14-141 (319)
69 PHA02544 44 clamp loader, smal 97.8 0.00017 3.7E-09 74.1 11.2 121 121-267 16-140 (316)
70 PRK14961 DNA polymerase III su 97.8 0.00024 5.2E-09 74.3 12.2 138 122-267 12-158 (363)
71 KOG3665 ZYG-1-like serine/thre 97.7 1.9E-05 4.1E-10 88.4 3.8 106 458-568 147-261 (699)
72 PRK05564 DNA polymerase III su 97.7 0.00032 6.9E-09 71.9 12.5 121 126-267 4-132 (313)
73 PRK08116 hypothetical protein; 97.7 0.0002 4.3E-09 71.4 10.7 101 150-267 115-220 (268)
74 PRK07003 DNA polymerase III su 97.7 0.00016 3.4E-09 80.0 10.6 126 122-271 12-162 (830)
75 PRK13341 recombination factor 97.7 0.00013 2.9E-09 82.0 9.6 53 123-179 25-80 (725)
76 smart00382 AAA ATPases associa 97.7 0.00024 5.3E-09 62.7 9.3 87 150-243 3-91 (148)
77 PF00004 AAA: ATPase family as 97.7 0.00019 4.2E-09 63.0 8.6 23 152-176 1-23 (132)
78 PRK14960 DNA polymerase III su 97.7 0.00022 4.7E-09 78.0 10.4 122 122-267 11-157 (702)
79 PRK15386 type III secretion pr 97.7 0.00012 2.6E-09 75.9 7.9 113 438-567 53-187 (426)
80 PRK12323 DNA polymerase III su 97.6 0.00027 5.8E-09 77.1 10.5 49 122-171 12-60 (700)
81 PRK14957 DNA polymerase III su 97.6 0.00029 6.4E-09 76.5 10.9 123 122-267 12-158 (546)
82 COG2256 MGS1 ATPase related to 97.6 0.00022 4.8E-09 72.4 9.1 108 126-267 30-142 (436)
83 KOG3207 Beta-tubulin folding c 97.6 2E-05 4.4E-10 80.1 1.6 127 436-567 196-336 (505)
84 PRK08691 DNA polymerase III su 97.6 0.00033 7.1E-09 77.2 10.7 49 122-171 12-60 (709)
85 PRK10536 hypothetical protein; 97.6 0.00081 1.7E-08 65.4 11.9 58 123-184 52-109 (262)
86 KOG3665 ZYG-1-like serine/thre 97.6 5.3E-05 1.1E-09 84.9 4.3 128 458-589 121-258 (699)
87 PRK14949 DNA polymerase III su 97.6 0.00036 7.9E-09 78.6 10.5 144 122-271 12-162 (944)
88 KOG2543 Origin recognition com 97.6 0.0004 8.7E-09 69.9 9.7 114 125-243 5-128 (438)
89 PRK08727 hypothetical protein; 97.6 0.00023 5E-09 69.5 7.9 58 126-187 19-77 (233)
90 KOG3207 Beta-tubulin folding c 97.6 2.7E-05 5.8E-10 79.2 1.3 84 458-547 196-284 (505)
91 PRK08118 topology modulation p 97.5 6E-05 1.3E-09 69.5 3.4 35 150-184 2-37 (167)
92 PRK15386 type III secretion pr 97.5 0.00011 2.4E-09 76.1 5.3 111 458-589 51-185 (426)
93 PRK03992 proteasome-activating 97.5 0.00038 8.1E-09 73.4 9.5 48 124-171 129-187 (389)
94 PRK14969 DNA polymerase III su 97.5 0.00078 1.7E-08 73.7 12.0 48 123-171 13-60 (527)
95 KOG4579 Leucine-rich repeat (L 97.5 3.1E-05 6.8E-10 66.6 0.6 90 483-575 49-139 (177)
96 PRK14955 DNA polymerase III su 97.5 0.00077 1.7E-08 71.4 11.2 49 122-171 12-60 (397)
97 KOG4237 Extracellular matrix p 97.5 1.9E-05 4E-10 79.3 -0.9 63 479-541 132-195 (498)
98 PRK14962 DNA polymerase III su 97.5 0.00074 1.6E-08 72.6 11.1 49 122-171 10-58 (472)
99 PRK08084 DNA replication initi 97.5 0.0006 1.3E-08 66.7 9.6 38 149-188 45-82 (235)
100 PRK14958 DNA polymerase III su 97.5 0.00082 1.8E-08 73.0 11.3 124 122-267 12-158 (509)
101 PRK05642 DNA replication initi 97.4 0.00059 1.3E-08 66.7 8.8 90 149-267 45-139 (234)
102 PRK06645 DNA polymerase III su 97.4 0.0013 2.8E-08 71.1 11.6 138 121-267 16-167 (507)
103 PRK12377 putative replication 97.4 0.00048 1E-08 67.5 7.6 100 149-267 101-205 (248)
104 PRK14951 DNA polymerase III su 97.4 0.0011 2.3E-08 73.2 11.1 49 122-171 12-60 (618)
105 PRK14956 DNA polymerase III su 97.4 0.00086 1.9E-08 71.2 9.8 142 122-271 14-164 (484)
106 PRK14964 DNA polymerase III su 97.4 0.0011 2.4E-08 71.2 10.7 120 122-267 9-155 (491)
107 PF00308 Bac_DnaA: Bacterial d 97.3 0.0014 3.1E-08 63.3 10.4 120 128-267 11-139 (219)
108 TIGR02397 dnaX_nterm DNA polym 97.3 0.0019 4.1E-08 67.6 12.1 49 122-171 10-58 (355)
109 KOG0531 Protein phosphatase 1, 97.3 5.4E-05 1.2E-09 80.9 0.2 102 458-567 94-196 (414)
110 PRK07994 DNA polymerase III su 97.3 0.001 2.3E-08 73.5 10.0 49 122-171 12-60 (647)
111 cd01133 F1-ATPase_beta F1 ATP 97.3 0.00046 1E-08 68.0 6.5 90 150-241 70-174 (274)
112 KOG1859 Leucine-rich repeat pr 97.3 8.9E-06 1.9E-10 87.3 -6.1 85 481-568 181-265 (1096)
113 PF04665 Pox_A32: Poxvirus A32 97.3 0.00043 9.4E-09 66.9 5.9 34 151-186 15-48 (241)
114 PRK07940 DNA polymerase III su 97.3 0.0018 4E-08 67.9 11.1 47 125-171 4-58 (394)
115 PF05496 RuvB_N: Holliday junc 97.3 0.00049 1.1E-08 65.2 6.0 57 122-180 20-79 (233)
116 PRK08181 transposase; Validate 97.3 0.00046 1E-08 68.4 6.1 98 150-267 107-208 (269)
117 PRK06921 hypothetical protein; 97.3 0.0007 1.5E-08 67.4 7.3 37 149-187 117-154 (266)
118 KOG4579 Leucine-rich repeat (L 97.3 6.2E-05 1.3E-09 64.8 -0.2 87 461-552 55-141 (177)
119 KOG1859 Leucine-rich repeat pr 97.3 6.9E-06 1.5E-10 88.1 -7.3 96 489-589 166-262 (1096)
120 KOG2120 SCF ubiquitin ligase, 97.2 2.5E-05 5.4E-10 75.6 -2.9 144 438-589 211-371 (419)
121 PRK05896 DNA polymerase III su 97.2 0.0011 2.4E-08 72.4 9.2 49 122-171 12-60 (605)
122 PRK09087 hypothetical protein; 97.2 0.0053 1.2E-07 59.5 13.0 24 149-172 44-67 (226)
123 TIGR03689 pup_AAA proteasome A 97.2 0.0018 3.9E-08 69.8 10.5 53 124-178 180-243 (512)
124 COG3899 Predicted ATPase [Gene 97.2 0.0059 1.3E-07 70.7 15.3 50 127-178 1-51 (849)
125 PRK06526 transposase; Provisio 97.2 0.00032 6.9E-09 69.2 4.4 22 150-171 99-120 (254)
126 TIGR00678 holB DNA polymerase 97.2 0.0039 8.4E-08 58.8 11.6 39 229-267 95-135 (188)
127 KOG2227 Pre-initiation complex 97.2 0.0019 4.2E-08 66.8 9.8 118 121-242 145-268 (529)
128 KOG2028 ATPase related to the 97.2 0.0012 2.6E-08 66.0 7.9 114 126-267 138-260 (554)
129 PTZ00454 26S protease regulato 97.2 0.0018 3.9E-08 68.2 9.9 55 123-179 142-207 (398)
130 PHA00729 NTP-binding motif con 97.2 0.001 2.2E-08 63.6 7.3 32 138-171 8-39 (226)
131 PRK14954 DNA polymerase III su 97.2 0.0028 6E-08 70.2 11.7 49 122-171 12-60 (620)
132 COG0466 Lon ATP-dependent Lon 97.2 0.0016 3.5E-08 70.8 9.3 53 125-179 322-378 (782)
133 PRK14970 DNA polymerase III su 97.2 0.0032 6.9E-08 66.2 11.5 49 122-171 13-61 (367)
134 PRK14088 dnaA chromosomal repl 97.2 0.0092 2E-07 64.0 15.1 100 149-267 130-236 (440)
135 TIGR02881 spore_V_K stage V sp 97.1 0.0019 4.2E-08 64.3 9.3 45 127-171 7-64 (261)
136 PRK12608 transcription termina 97.1 0.0014 3E-08 67.3 7.7 105 134-241 119-231 (380)
137 PRK14952 DNA polymerase III su 97.1 0.0042 9.1E-08 68.3 11.6 49 122-171 9-57 (584)
138 PRK09183 transposase/IS protei 97.1 0.0015 3.3E-08 64.7 7.6 22 150-171 103-124 (259)
139 PRK10865 protein disaggregatio 97.1 0.0019 4E-08 74.9 9.1 45 125-171 177-221 (857)
140 PRK07952 DNA replication prote 97.0 0.0017 3.6E-08 63.5 7.4 115 135-267 85-204 (244)
141 PRK08903 DnaA regulatory inact 97.0 0.0024 5.2E-08 62.2 8.5 46 126-171 18-64 (227)
142 PF05673 DUF815: Protein of un 97.0 0.0057 1.2E-07 58.9 10.6 119 121-267 22-149 (249)
143 PRK14974 cell division protein 97.0 0.033 7.1E-07 57.1 16.8 114 148-265 139-261 (336)
144 TIGR02880 cbbX_cfxQ probable R 97.0 0.0052 1.1E-07 61.9 10.9 121 127-267 23-169 (284)
145 PRK07261 topology modulation p 97.0 0.0016 3.4E-08 60.4 6.5 67 151-242 2-69 (171)
146 PRK14953 DNA polymerase III su 97.0 0.0056 1.2E-07 66.3 11.6 49 122-171 12-60 (486)
147 TIGR02639 ClpA ATP-dependent C 97.0 0.0028 6.2E-08 72.5 9.9 115 125-253 453-578 (731)
148 PF01695 IstB_IS21: IstB-like 97.0 0.00038 8.1E-09 64.9 2.3 36 150-187 48-83 (178)
149 PRK14086 dnaA chromosomal repl 97.0 0.0074 1.6E-07 66.1 12.4 98 150-267 315-419 (617)
150 PRK10865 protein disaggregatio 97.0 0.0036 7.8E-08 72.6 10.6 119 125-253 567-695 (857)
151 CHL00181 cbbX CbbX; Provisiona 97.0 0.0071 1.5E-07 60.9 11.5 21 151-171 61-81 (287)
152 PRK14950 DNA polymerase III su 97.0 0.0053 1.2E-07 68.3 11.6 138 122-267 12-159 (585)
153 PRK00149 dnaA chromosomal repl 97.0 0.0031 6.8E-08 68.0 9.5 99 149-267 148-253 (450)
154 TIGR02639 ClpA ATP-dependent C 97.0 0.004 8.8E-08 71.3 10.9 45 125-171 181-225 (731)
155 PRK11331 5-methylcytosine-spec 97.0 0.0011 2.3E-08 69.7 5.6 62 125-190 174-235 (459)
156 PRK09111 DNA polymerase III su 97.0 0.0045 9.8E-08 68.4 10.8 49 122-171 20-68 (598)
157 PTZ00361 26 proteosome regulat 97.0 0.003 6.5E-08 67.0 9.0 54 124-179 181-245 (438)
158 PRK06835 DNA replication prote 97.0 0.0019 4E-08 66.2 7.1 36 150-187 184-219 (329)
159 PRK07764 DNA polymerase III su 96.9 0.0051 1.1E-07 70.4 11.3 142 123-272 12-164 (824)
160 KOG0531 Protein phosphatase 1, 96.9 0.00028 6.1E-09 75.4 1.0 104 481-589 89-194 (414)
161 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0025 5.4E-08 74.1 8.8 132 125-267 564-717 (852)
162 CHL00095 clpC Clp protease ATP 96.9 0.0024 5.1E-08 74.1 8.5 44 126-171 179-222 (821)
163 PRK06620 hypothetical protein; 96.9 0.0034 7.3E-08 60.4 8.1 23 150-172 45-67 (214)
164 TIGR00763 lon ATP-dependent pr 96.9 0.0076 1.7E-07 69.5 12.4 52 126-179 320-375 (775)
165 PRK10787 DNA-binding ATP-depen 96.9 0.0088 1.9E-07 68.5 12.5 53 125-179 321-377 (784)
166 PF13207 AAA_17: AAA domain; P 96.9 0.00078 1.7E-08 58.3 3.0 21 151-171 1-21 (121)
167 COG0470 HolB ATPase involved i 96.8 0.01 2.2E-07 61.0 11.8 125 127-273 2-154 (325)
168 TIGR00602 rad24 checkpoint pro 96.8 0.0028 6.1E-08 70.1 7.9 50 122-171 80-132 (637)
169 PRK14959 DNA polymerase III su 96.8 0.0069 1.5E-07 66.6 10.6 49 122-171 12-60 (624)
170 CHL00095 clpC Clp protease ATP 96.8 0.0061 1.3E-07 70.7 10.8 131 125-267 508-661 (821)
171 PRK06305 DNA polymerase III su 96.8 0.008 1.7E-07 64.5 11.0 49 122-171 13-61 (451)
172 PRK08939 primosomal protein Dn 96.8 0.0036 7.9E-08 63.5 7.9 118 130-267 135-260 (306)
173 TIGR00362 DnaA chromosomal rep 96.8 0.0045 9.7E-08 65.9 9.0 99 149-267 136-241 (405)
174 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0041 8.9E-08 71.9 9.2 47 125-171 565-618 (852)
175 PF05621 TniB: Bacterial TniB 96.8 0.0088 1.9E-07 59.5 10.1 111 126-242 34-157 (302)
176 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0035 7.6E-08 72.9 8.6 45 125-171 172-216 (852)
177 PRK07471 DNA polymerase III su 96.8 0.014 3E-07 60.8 12.1 51 120-171 13-63 (365)
178 PRK14087 dnaA chromosomal repl 96.8 0.0057 1.2E-07 65.7 9.5 101 149-267 141-248 (450)
179 COG0593 DnaA ATPase involved i 96.8 0.0078 1.7E-07 62.7 10.0 101 148-267 112-217 (408)
180 TIGR01241 FtsH_fam ATP-depende 96.8 0.0055 1.2E-07 67.0 9.5 49 123-171 52-110 (495)
181 PRK14965 DNA polymerase III su 96.8 0.0093 2E-07 66.1 11.3 49 122-171 12-60 (576)
182 PRK08451 DNA polymerase III su 96.8 0.013 2.8E-07 63.6 12.0 49 122-171 10-58 (535)
183 PRK05541 adenylylsulfate kinas 96.8 0.0045 9.8E-08 57.6 7.5 36 149-186 7-42 (176)
184 PRK14722 flhF flagellar biosyn 96.7 0.044 9.5E-07 56.9 15.3 86 149-242 137-227 (374)
185 PRK06696 uridine kinase; Valid 96.7 0.0019 4.1E-08 62.7 5.0 42 130-171 2-44 (223)
186 PRK09361 radB DNA repair and r 96.7 0.0049 1.1E-07 59.9 7.9 49 138-188 12-60 (225)
187 PRK07667 uridine kinase; Provi 96.7 0.0024 5.2E-08 60.4 5.5 38 134-171 2-39 (193)
188 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0037 7.9E-08 72.4 8.1 46 124-171 185-230 (852)
189 COG1484 DnaC DNA replication p 96.7 0.0026 5.6E-08 62.8 5.9 74 149-241 105-178 (254)
190 PF02562 PhoH: PhoH-like prote 96.7 0.0066 1.4E-07 57.4 8.4 53 130-186 4-56 (205)
191 cd01393 recA_like RecA is a b 96.7 0.012 2.5E-07 57.2 10.5 101 138-240 8-124 (226)
192 PRK12422 chromosomal replicati 96.7 0.0042 9.1E-08 66.5 7.8 99 149-267 141-244 (445)
193 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0044 9.5E-08 56.1 6.6 115 150-267 3-137 (159)
194 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0019 4.1E-08 66.0 4.6 46 127-172 52-101 (361)
195 CHL00176 ftsH cell division pr 96.6 0.0059 1.3E-07 68.1 8.6 49 123-171 180-238 (638)
196 cd01120 RecA-like_NTPases RecA 96.6 0.013 2.9E-07 53.1 9.7 38 151-190 1-38 (165)
197 PRK06647 DNA polymerase III su 96.6 0.017 3.7E-07 63.6 12.0 49 122-171 12-60 (563)
198 PF13671 AAA_33: AAA domain; P 96.6 0.0092 2E-07 53.2 8.4 21 151-171 1-21 (143)
199 TIGR00064 ftsY signal recognit 96.6 0.013 2.9E-07 58.4 10.3 91 148-241 71-165 (272)
200 PRK05703 flhF flagellar biosyn 96.6 0.049 1.1E-06 58.0 14.7 84 149-240 221-309 (424)
201 PRK00771 signal recognition pa 96.6 0.047 1E-06 58.1 14.5 89 148-240 94-185 (437)
202 PRK14971 DNA polymerase III su 96.6 0.018 4E-07 64.1 11.8 49 122-171 13-61 (614)
203 PRK09112 DNA polymerase III su 96.6 0.017 3.7E-07 59.8 10.8 51 120-171 17-67 (351)
204 KOG0991 Replication factor C, 96.6 0.0041 8.9E-08 58.5 5.5 48 122-171 23-70 (333)
205 KOG1909 Ran GTPase-activating 96.5 0.0018 3.8E-08 64.6 3.3 135 435-569 155-310 (382)
206 PF13177 DNA_pol3_delta2: DNA 96.5 0.029 6.3E-07 51.4 11.2 120 130-271 1-145 (162)
207 PRK05563 DNA polymerase III su 96.5 0.024 5.1E-07 62.7 12.4 49 122-171 12-60 (559)
208 PF00485 PRK: Phosphoribulokin 96.5 0.015 3.2E-07 55.1 9.4 81 151-234 1-87 (194)
209 PRK14948 DNA polymerase III su 96.5 0.021 4.6E-07 63.7 11.9 49 123-172 13-61 (620)
210 COG1618 Predicted nucleotide k 96.5 0.0022 4.7E-08 57.0 3.2 36 149-186 5-41 (179)
211 TIGR02237 recomb_radB DNA repa 96.5 0.0058 1.3E-07 58.6 6.6 41 147-189 10-50 (209)
212 PRK11889 flhF flagellar biosyn 96.5 0.036 7.9E-07 57.4 12.4 38 148-187 240-277 (436)
213 KOG0989 Replication factor C, 96.5 0.01 2.2E-07 58.5 8.0 130 122-267 32-168 (346)
214 cd01394 radB RadB. The archaea 96.5 0.0092 2E-07 57.6 7.8 51 138-190 8-58 (218)
215 PRK11034 clpA ATP-dependent Cl 96.5 0.0091 2E-07 67.9 8.7 45 125-171 185-229 (758)
216 PRK07133 DNA polymerase III su 96.4 0.017 3.8E-07 64.6 10.6 49 122-171 14-62 (725)
217 PRK06762 hypothetical protein; 96.4 0.015 3.3E-07 53.4 8.8 23 149-171 2-24 (166)
218 KOG0733 Nuclear AAA ATPase (VC 96.4 0.01 2.2E-07 63.4 8.3 96 124-241 188-293 (802)
219 cd01131 PilT Pilus retraction 96.4 0.0065 1.4E-07 57.7 6.4 107 150-267 2-108 (198)
220 COG0572 Udk Uridine kinase [Nu 96.4 0.0056 1.2E-07 57.9 5.7 79 148-231 7-85 (218)
221 PF00448 SRP54: SRP54-type pro 96.4 0.0083 1.8E-07 56.8 6.5 54 149-204 1-57 (196)
222 TIGR01243 CDC48 AAA family ATP 96.4 0.014 3E-07 67.1 9.6 52 125-178 177-239 (733)
223 cd03115 SRP The signal recogni 96.3 0.022 4.7E-07 52.8 9.2 21 151-171 2-22 (173)
224 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.018 3.9E-07 56.3 9.1 50 141-190 11-64 (235)
225 KOG1514 Origin recognition com 96.3 0.024 5.2E-07 61.8 10.3 135 124-265 394-546 (767)
226 PRK11034 clpA ATP-dependent Cl 96.3 0.011 2.5E-07 67.1 8.3 47 125-171 457-510 (758)
227 PTZ00301 uridine kinase; Provi 96.3 0.0059 1.3E-07 58.4 5.2 28 149-178 3-30 (210)
228 KOG0735 AAA+-type ATPase [Post 96.3 0.02 4.3E-07 62.4 9.5 94 124-240 406-504 (952)
229 PRK15455 PrkA family serine pr 96.3 0.0046 1E-07 66.6 4.7 47 125-171 75-125 (644)
230 KOG2004 Mitochondrial ATP-depe 96.3 0.018 3.8E-07 62.8 9.0 53 125-179 410-466 (906)
231 COG2255 RuvB Holliday junction 96.2 0.0041 8.9E-08 60.5 3.8 56 122-179 22-80 (332)
232 COG0542 clpA ATP-binding subun 96.2 0.013 2.8E-07 65.7 8.1 118 126-254 491-619 (786)
233 PRK06067 flagellar accessory p 96.2 0.039 8.4E-07 53.9 10.8 100 138-240 14-130 (234)
234 PF13604 AAA_30: AAA domain; P 96.2 0.035 7.6E-07 52.6 10.0 104 149-267 18-130 (196)
235 COG1373 Predicted ATPase (AAA+ 96.2 0.027 5.8E-07 59.6 10.0 96 151-272 39-134 (398)
236 PF07693 KAP_NTPase: KAP famil 96.2 0.053 1.2E-06 55.8 12.2 71 132-204 2-82 (325)
237 PF00560 LRR_1: Leucine Rich R 96.2 0.002 4.3E-08 37.3 0.8 21 535-555 1-21 (22)
238 cd03214 ABC_Iron-Siderophores_ 96.2 0.03 6.4E-07 52.3 9.3 115 150-267 26-157 (180)
239 KOG2120 SCF ubiquitin ligase, 96.2 0.001 2.2E-08 64.7 -0.6 57 508-566 311-372 (419)
240 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.033 7.2E-07 52.0 9.6 21 151-171 1-21 (183)
241 PF14532 Sigma54_activ_2: Sigm 96.1 0.0077 1.7E-07 53.6 4.8 105 129-267 1-109 (138)
242 PRK08927 fliI flagellum-specif 96.1 0.018 3.8E-07 60.9 8.1 90 149-242 158-260 (442)
243 PLN00020 ribulose bisphosphate 96.1 0.0077 1.7E-07 61.4 5.1 31 147-179 146-176 (413)
244 PF00006 ATP-synt_ab: ATP synt 96.1 0.015 3.2E-07 55.7 6.8 84 150-239 16-114 (215)
245 TIGR02640 gas_vesic_GvpN gas v 96.1 0.032 6.9E-07 55.5 9.5 34 134-171 10-43 (262)
246 PRK08972 fliI flagellum-specif 96.1 0.016 3.4E-07 61.1 7.4 90 149-242 162-264 (444)
247 PRK10867 signal recognition pa 96.1 0.13 2.8E-06 54.7 14.3 24 148-171 99-122 (433)
248 TIGR03499 FlhF flagellar biosy 96.1 0.027 5.9E-07 56.6 8.9 84 148-239 193-281 (282)
249 PRK12723 flagellar biosynthesi 96.1 0.074 1.6E-06 55.7 12.3 98 148-253 173-281 (388)
250 cd03247 ABCC_cytochrome_bd The 96.1 0.042 9E-07 51.2 9.6 114 150-267 29-156 (178)
251 KOG2739 Leucine-rich acidic nu 96.1 0.0019 4.2E-08 62.0 0.5 83 482-566 60-152 (260)
252 cd03216 ABC_Carb_Monos_I This 96.0 0.017 3.6E-07 53.1 6.6 106 150-267 27-141 (163)
253 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.03 6.5E-07 50.2 7.7 96 150-267 27-126 (144)
254 PRK12597 F0F1 ATP synthase sub 95.9 0.021 4.5E-07 60.9 7.4 89 150-240 144-247 (461)
255 TIGR02858 spore_III_AA stage I 95.9 0.1 2.2E-06 51.9 11.9 130 134-271 97-231 (270)
256 PRK09270 nucleoside triphospha 95.9 0.0095 2.1E-07 58.0 4.6 26 146-171 30-55 (229)
257 PF13238 AAA_18: AAA domain; P 95.9 0.0057 1.2E-07 53.3 2.7 20 152-171 1-20 (129)
258 PRK06547 hypothetical protein; 95.9 0.012 2.5E-07 54.5 4.8 24 148-171 14-37 (172)
259 COG0468 RecA RecA/RadA recombi 95.8 0.033 7.1E-07 55.3 8.2 95 141-240 52-151 (279)
260 cd00983 recA RecA is a bacter 95.8 0.041 8.8E-07 56.0 9.0 98 138-240 43-143 (325)
261 CHL00195 ycf46 Ycf46; Provisio 95.8 0.047 1E-06 59.0 9.9 48 124-171 226-281 (489)
262 PRK08233 hypothetical protein; 95.8 0.0074 1.6E-07 56.3 3.4 23 149-171 3-25 (182)
263 cd01135 V_A-ATPase_B V/A-type 95.8 0.033 7.2E-07 55.0 7.9 93 150-242 70-178 (276)
264 TIGR00959 ffh signal recogniti 95.8 0.22 4.8E-06 52.9 14.7 24 148-171 98-121 (428)
265 PRK11608 pspF phage shock prot 95.8 0.042 9.2E-07 56.5 9.1 46 126-171 6-51 (326)
266 PRK05480 uridine/cytidine kina 95.8 0.0078 1.7E-07 57.7 3.5 24 148-171 5-28 (209)
267 PRK15429 formate hydrogenlyase 95.8 0.034 7.5E-07 63.4 9.2 49 124-172 374-422 (686)
268 COG1121 ZnuC ABC-type Mn/Zn tr 95.8 0.032 7E-07 54.3 7.6 116 150-267 31-198 (254)
269 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.054 1.2E-06 53.0 9.5 59 138-198 10-68 (237)
270 PRK08058 DNA polymerase III su 95.8 0.076 1.6E-06 54.7 10.8 123 127-272 6-154 (329)
271 PF08423 Rad51: Rad51; InterP 95.8 0.021 4.6E-07 56.5 6.5 103 137-239 26-142 (256)
272 cd03228 ABCC_MRP_Like The MRP 95.7 0.05 1.1E-06 50.3 8.6 113 149-267 28-154 (171)
273 PRK04296 thymidine kinase; Pro 95.7 0.015 3.2E-07 54.8 5.1 111 150-267 3-115 (190)
274 TIGR00235 udk uridine kinase. 95.7 0.008 1.7E-07 57.6 3.3 24 148-171 5-28 (207)
275 TIGR02012 tigrfam_recA protein 95.7 0.043 9.4E-07 55.7 8.7 98 138-240 43-143 (321)
276 KOG1644 U2-associated snRNP A' 95.7 0.018 4E-07 53.3 5.4 78 488-567 43-123 (233)
277 PRK08149 ATP synthase SpaL; Va 95.7 0.036 7.7E-07 58.5 8.2 90 149-242 151-253 (428)
278 COG4608 AppF ABC-type oligopep 95.7 0.034 7.3E-07 54.3 7.3 120 149-272 39-173 (268)
279 cd02019 NK Nucleoside/nucleoti 95.7 0.0078 1.7E-07 46.3 2.5 21 151-171 1-21 (69)
280 TIGR01425 SRP54_euk signal rec 95.7 0.1 2.2E-06 55.2 11.3 24 148-171 99-122 (429)
281 cd03246 ABCC_Protease_Secretio 95.6 0.034 7.4E-07 51.5 7.1 22 150-171 29-50 (173)
282 COG0563 Adk Adenylate kinase a 95.6 0.03 6.5E-07 52.0 6.6 95 151-254 2-102 (178)
283 PRK05707 DNA polymerase III su 95.6 0.097 2.1E-06 53.7 10.9 24 148-171 21-44 (328)
284 cd01121 Sms Sms (bacterial rad 95.6 0.046 1E-06 57.0 8.5 99 136-240 69-168 (372)
285 COG1222 RPT1 ATP-dependent 26S 95.6 0.079 1.7E-06 53.5 9.6 55 123-179 148-213 (406)
286 PRK03839 putative kinase; Prov 95.6 0.0092 2E-07 55.7 3.0 21 151-171 2-22 (180)
287 COG2607 Predicted ATPase (AAA+ 95.6 0.086 1.9E-06 50.3 9.3 118 123-267 57-182 (287)
288 cd03282 ABC_MSH4_euk MutS4 hom 95.6 0.02 4.2E-07 54.6 5.3 117 149-272 29-154 (204)
289 PRK09354 recA recombinase A; P 95.6 0.058 1.3E-06 55.3 8.9 98 138-240 48-148 (349)
290 KOG0744 AAA+-type ATPase [Post 95.6 0.054 1.2E-06 53.8 8.2 80 149-240 177-260 (423)
291 cd03238 ABC_UvrA The excision 95.6 0.073 1.6E-06 49.4 8.9 110 150-267 22-148 (176)
292 PF00560 LRR_1: Leucine Rich R 95.6 0.0041 9E-08 35.9 0.3 21 511-532 1-21 (22)
293 TIGR01243 CDC48 AAA family ATP 95.6 0.061 1.3E-06 61.9 10.2 53 125-179 452-515 (733)
294 PRK06002 fliI flagellum-specif 95.5 0.049 1.1E-06 57.7 8.5 90 150-242 166-266 (450)
295 PRK04301 radA DNA repair and r 95.5 0.077 1.7E-06 54.4 9.8 67 137-203 90-161 (317)
296 TIGR00390 hslU ATP-dependent p 95.5 0.035 7.5E-07 58.0 7.1 52 126-179 12-75 (441)
297 PRK09280 F0F1 ATP synthase sub 95.5 0.041 8.8E-07 58.5 7.8 90 150-241 145-249 (463)
298 PF07726 AAA_3: ATPase family 95.5 0.0091 2E-07 51.5 2.4 29 152-182 2-30 (131)
299 KOG0734 AAA+-type ATPase conta 95.5 0.084 1.8E-06 55.8 9.7 51 125-175 303-363 (752)
300 PRK04040 adenylate kinase; Pro 95.5 0.013 2.8E-07 55.1 3.6 23 149-171 2-24 (188)
301 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.049 1.1E-06 49.5 7.3 109 150-267 26-139 (157)
302 cd03223 ABCD_peroxisomal_ALDP 95.4 0.072 1.6E-06 49.0 8.4 23 150-172 28-50 (166)
303 TIGR02974 phageshock_pspF psp 95.4 0.065 1.4E-06 55.2 8.9 45 128-172 1-45 (329)
304 PRK12726 flagellar biosynthesi 95.4 0.16 3.4E-06 52.6 11.4 99 148-252 205-311 (407)
305 KOG2228 Origin recognition com 95.4 0.11 2.3E-06 52.1 9.7 137 124-267 22-181 (408)
306 PRK14723 flhF flagellar biosyn 95.4 0.15 3.2E-06 57.7 12.1 23 149-171 185-207 (767)
307 PRK08533 flagellar accessory p 95.4 0.082 1.8E-06 51.5 9.1 48 149-198 24-71 (230)
308 TIGR01817 nifA Nif-specific re 95.4 0.07 1.5E-06 59.0 9.6 50 123-172 193-242 (534)
309 TIGR03498 FliI_clade3 flagella 95.4 0.051 1.1E-06 57.4 8.0 90 149-242 140-242 (418)
310 cd01122 GP4d_helicase GP4d_hel 95.4 0.17 3.6E-06 50.6 11.5 53 149-203 30-83 (271)
311 TIGR03574 selen_PSTK L-seryl-t 95.4 0.06 1.3E-06 53.2 8.1 21 151-171 1-21 (249)
312 PRK13531 regulatory ATPase Rav 95.3 0.018 4E-07 61.2 4.6 42 126-171 20-61 (498)
313 KOG1969 DNA replication checkp 95.3 0.035 7.6E-07 60.7 6.6 72 147-242 324-399 (877)
314 cd02021 GntK Gluconate kinase 95.3 0.12 2.7E-06 46.4 9.5 21 151-171 1-21 (150)
315 cd01136 ATPase_flagellum-secre 95.3 0.078 1.7E-06 54.0 8.8 89 150-242 70-171 (326)
316 cd03281 ABC_MSH5_euk MutS5 hom 95.3 0.026 5.6E-07 54.3 5.2 23 149-171 29-51 (213)
317 PRK00625 shikimate kinase; Pro 95.3 0.012 2.7E-07 54.3 2.8 21 151-171 2-22 (173)
318 PRK12724 flagellar biosynthesi 95.3 0.099 2.1E-06 54.8 9.6 23 149-171 223-245 (432)
319 TIGR01360 aden_kin_iso1 adenyl 95.3 0.015 3.2E-07 54.6 3.3 24 148-171 2-25 (188)
320 TIGR00150 HI0065_YjeE ATPase, 95.3 0.028 6E-07 49.3 4.7 39 134-172 7-45 (133)
321 PRK05022 anaerobic nitric oxid 95.2 0.094 2E-06 57.5 9.9 49 124-172 185-233 (509)
322 PRK14721 flhF flagellar biosyn 95.2 0.22 4.9E-06 52.6 12.2 23 149-171 191-213 (420)
323 PF01583 APS_kinase: Adenylyls 95.2 0.015 3.3E-07 52.4 3.0 35 150-186 3-37 (156)
324 PRK06936 type III secretion sy 95.2 0.074 1.6E-06 56.2 8.5 88 149-242 162-264 (439)
325 PF08433 KTI12: Chromatin asso 95.2 0.027 6E-07 56.0 5.0 22 150-171 2-23 (270)
326 cd02023 UMPK Uridine monophosp 95.2 0.012 2.6E-07 55.9 2.4 21 151-171 1-21 (198)
327 PRK07399 DNA polymerase III su 95.2 0.12 2.6E-06 52.8 9.7 45 126-171 4-48 (314)
328 PRK00131 aroK shikimate kinase 95.2 0.017 3.7E-07 53.4 3.3 23 149-171 4-26 (175)
329 COG0467 RAD55 RecA-superfamily 95.2 0.041 8.9E-07 54.7 6.2 52 147-200 21-72 (260)
330 KOG2739 Leucine-rich acidic nu 95.1 0.012 2.5E-07 56.7 2.1 80 484-566 40-125 (260)
331 cd02025 PanK Pantothenate kina 95.1 0.012 2.7E-07 56.7 2.3 21 151-171 1-21 (220)
332 KOG2982 Uncharacterized conser 95.1 0.0085 1.9E-07 58.5 1.1 86 458-546 70-158 (418)
333 PF13481 AAA_25: AAA domain; P 95.1 0.04 8.6E-07 51.9 5.6 91 150-240 33-151 (193)
334 PRK05201 hslU ATP-dependent pr 95.1 0.045 9.8E-07 57.2 6.3 52 126-179 15-78 (443)
335 TIGR03305 alt_F1F0_F1_bet alte 95.1 0.049 1.1E-06 57.7 6.7 92 150-242 139-244 (449)
336 TIGR03497 FliI_clade2 flagella 95.1 0.077 1.7E-06 56.1 8.2 89 149-241 137-238 (413)
337 COG1428 Deoxynucleoside kinase 95.1 0.018 3.9E-07 53.9 3.0 23 149-171 4-26 (216)
338 TIGR03496 FliI_clade1 flagella 95.1 0.079 1.7E-06 55.9 8.3 89 149-241 137-238 (411)
339 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.16 3.5E-06 49.3 10.0 56 138-195 9-64 (229)
340 PRK13947 shikimate kinase; Pro 95.0 0.017 3.7E-07 53.4 2.8 25 151-177 3-27 (171)
341 KOG0741 AAA+-type ATPase [Post 95.0 0.23 5.1E-06 52.5 11.2 76 147-247 536-615 (744)
342 PRK00279 adk adenylate kinase; 95.0 0.1 2.2E-06 50.3 8.3 21 151-171 2-22 (215)
343 COG1875 NYN ribonuclease and A 95.0 0.1 2.2E-06 52.8 8.3 38 131-170 229-266 (436)
344 cd02027 APSK Adenosine 5'-phos 95.0 0.17 3.8E-06 45.5 9.3 21 151-171 1-21 (149)
345 PRK11823 DNA repair protein Ra 95.0 0.14 3E-06 55.1 10.1 100 135-240 66-166 (446)
346 KOG1644 U2-associated snRNP A' 95.0 0.023 4.9E-07 52.7 3.4 81 458-543 63-149 (233)
347 PRK10416 signal recognition pa 95.0 0.098 2.1E-06 53.5 8.5 24 148-171 113-136 (318)
348 cd01134 V_A-ATPase_A V/A-type 95.0 0.13 2.7E-06 52.6 9.0 47 150-200 158-207 (369)
349 PRK07594 type III secretion sy 95.0 0.071 1.5E-06 56.4 7.6 89 149-241 155-256 (433)
350 cd01132 F1_ATPase_alpha F1 ATP 95.0 0.14 3E-06 50.6 9.1 94 150-249 70-181 (274)
351 cd02024 NRK1 Nicotinamide ribo 94.9 0.016 3.4E-07 54.3 2.4 21 151-171 1-21 (187)
352 PF14516 AAA_35: AAA-like doma 94.9 0.19 4.2E-06 51.8 10.7 115 122-242 7-139 (331)
353 cd01125 repA Hexameric Replica 94.9 0.17 3.7E-06 49.6 9.9 21 151-171 3-23 (239)
354 cd02028 UMPK_like Uridine mono 94.9 0.018 4E-07 53.7 2.8 21 151-171 1-21 (179)
355 TIGR02322 phosphon_PhnN phosph 94.9 0.02 4.3E-07 53.4 3.0 22 150-171 2-23 (179)
356 KOG0924 mRNA splicing factor A 94.9 0.19 4.1E-06 54.6 10.4 123 135-267 361-509 (1042)
357 PRK12727 flagellar biosynthesi 94.9 0.067 1.4E-06 57.6 7.2 84 149-240 350-438 (559)
358 TIGR01039 atpD ATP synthase, F 94.9 0.077 1.7E-06 56.3 7.5 91 150-242 144-249 (461)
359 TIGR01420 pilT_fam pilus retra 94.9 0.066 1.4E-06 55.5 7.0 107 150-267 123-229 (343)
360 TIGR01041 ATP_syn_B_arch ATP s 94.9 0.098 2.1E-06 55.8 8.4 93 150-242 142-250 (458)
361 TIGR00708 cobA cob(I)alamin ad 94.8 0.082 1.8E-06 48.5 6.8 116 149-267 5-139 (173)
362 COG1419 FlhF Flagellar GTP-bin 94.8 0.17 3.6E-06 52.5 9.6 97 149-253 203-308 (407)
363 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.1 2.2E-06 51.8 8.0 41 148-190 35-75 (259)
364 PRK10733 hflB ATP-dependent me 94.8 0.097 2.1E-06 59.0 8.7 52 126-179 152-213 (644)
365 PLN02318 phosphoribulokinase/u 94.8 0.033 7.3E-07 60.4 4.7 34 138-171 54-87 (656)
366 TIGR00764 lon_rel lon-related 94.8 0.063 1.4E-06 59.9 7.0 74 125-204 17-92 (608)
367 COG2884 FtsE Predicted ATPase 94.8 0.22 4.7E-06 46.0 9.1 121 150-272 29-200 (223)
368 PF00910 RNA_helicase: RNA hel 94.8 0.013 2.9E-07 49.5 1.3 20 152-171 1-20 (107)
369 COG2842 Uncharacterized ATPase 94.8 0.34 7.3E-06 47.9 11.1 116 124-252 70-189 (297)
370 PF03308 ArgK: ArgK protein; 94.8 0.046 9.9E-07 53.1 5.1 38 134-171 14-51 (266)
371 PTZ00185 ATPase alpha subunit; 94.8 0.12 2.6E-06 55.2 8.5 90 150-242 190-301 (574)
372 PLN03186 DNA repair protein RA 94.7 0.17 3.6E-06 52.2 9.5 69 136-204 110-183 (342)
373 cd00046 DEXDc DEAD-like helica 94.7 0.12 2.5E-06 45.1 7.4 52 151-202 2-54 (144)
374 PRK13949 shikimate kinase; Pro 94.7 0.024 5.1E-07 52.4 2.9 21 151-171 3-23 (169)
375 PRK12678 transcription termina 94.7 0.065 1.4E-06 57.8 6.4 91 150-242 417-515 (672)
376 PRK05688 fliI flagellum-specif 94.7 0.14 3E-06 54.4 8.9 90 149-242 168-270 (451)
377 TIGR00416 sms DNA repair prote 94.7 0.15 3.2E-06 54.9 9.3 101 134-240 79-180 (454)
378 PRK06217 hypothetical protein; 94.7 0.026 5.6E-07 52.9 3.1 22 151-172 3-24 (183)
379 PRK05922 type III secretion sy 94.7 0.14 3E-06 54.2 8.8 89 150-242 158-259 (434)
380 cd03285 ABC_MSH2_euk MutS2 hom 94.7 0.038 8.2E-07 53.5 4.3 115 148-267 29-152 (222)
381 smart00534 MUTSac ATPase domai 94.7 0.022 4.8E-07 53.4 2.6 112 151-267 1-121 (185)
382 PRK05439 pantothenate kinase; 94.7 0.04 8.8E-07 55.7 4.6 26 146-171 83-108 (311)
383 cd03280 ABC_MutS2 MutS2 homolo 94.6 0.024 5.2E-07 54.0 2.9 21 150-170 29-49 (200)
384 PRK03846 adenylylsulfate kinas 94.6 0.033 7.1E-07 52.9 3.8 24 148-171 23-46 (198)
385 cd01130 VirB11-like_ATPase Typ 94.6 0.024 5.3E-07 53.2 2.9 95 150-251 26-121 (186)
386 TIGR02238 recomb_DMC1 meiotic 94.6 0.19 4.1E-06 51.2 9.5 67 137-204 84-156 (313)
387 TIGR02236 recomb_radA DNA repa 94.6 0.17 3.6E-06 51.8 9.2 65 138-203 84-154 (310)
388 TIGR02655 circ_KaiC circadian 94.6 0.13 2.7E-06 56.1 8.7 103 135-240 249-363 (484)
389 PRK13765 ATP-dependent proteas 94.6 0.054 1.2E-06 60.4 5.9 75 124-204 29-105 (637)
390 PRK00889 adenylylsulfate kinas 94.6 0.031 6.6E-07 51.9 3.4 23 149-171 4-26 (175)
391 PRK04328 hypothetical protein; 94.6 0.18 4E-06 49.7 9.1 57 138-196 12-68 (249)
392 TIGR03263 guanyl_kin guanylate 94.6 0.027 5.9E-07 52.5 3.1 22 150-171 2-23 (180)
393 cd00071 GMPK Guanosine monopho 94.6 0.028 6.2E-07 49.8 3.0 21 151-171 1-21 (137)
394 TIGR01026 fliI_yscN ATPase Fli 94.6 0.11 2.3E-06 55.4 7.8 24 149-172 163-186 (440)
395 COG1124 DppF ABC-type dipeptid 94.6 0.037 8E-07 53.0 3.8 22 150-171 34-55 (252)
396 cd00227 CPT Chloramphenicol (C 94.5 0.027 5.9E-07 52.3 2.9 22 150-171 3-24 (175)
397 PF00406 ADK: Adenylate kinase 94.5 0.069 1.5E-06 48.2 5.4 84 154-250 1-94 (151)
398 PRK08472 fliI flagellum-specif 94.5 0.12 2.6E-06 54.7 7.9 24 149-172 157-180 (434)
399 PF00625 Guanylate_kin: Guanyl 94.5 0.049 1.1E-06 51.0 4.5 36 149-186 2-37 (183)
400 TIGR01313 therm_gnt_kin carboh 94.5 0.24 5.1E-06 45.3 9.0 20 152-171 1-20 (163)
401 KOG0733 Nuclear AAA ATPase (VC 94.5 0.081 1.7E-06 56.9 6.4 119 127-267 512-656 (802)
402 cd03213 ABCG_EPDR ABCG transpo 94.5 0.18 4E-06 47.6 8.5 23 149-171 35-57 (194)
403 TIGR03324 alt_F1F0_F1_al alter 94.5 0.13 2.8E-06 55.1 8.1 89 150-242 163-266 (497)
404 PF13504 LRR_7: Leucine rich r 94.5 0.023 4.9E-07 30.5 1.3 16 535-550 2-17 (17)
405 PRK05986 cob(I)alamin adenolsy 94.4 0.14 2.9E-06 47.8 7.2 117 149-267 22-157 (191)
406 PRK10751 molybdopterin-guanine 94.4 0.035 7.5E-07 51.1 3.3 24 148-171 5-28 (173)
407 PRK09099 type III secretion sy 94.4 0.14 3.1E-06 54.3 8.3 90 149-242 163-265 (441)
408 cd01129 PulE-GspE PulE/GspE Th 94.4 0.16 3.4E-06 50.6 8.2 117 130-267 63-182 (264)
409 PTZ00088 adenylate kinase 1; P 94.4 0.097 2.1E-06 50.8 6.5 20 152-171 9-28 (229)
410 cd02020 CMPK Cytidine monophos 94.4 0.027 5.9E-07 50.3 2.5 21 151-171 1-21 (147)
411 PRK13948 shikimate kinase; Pro 94.4 0.037 8E-07 51.6 3.4 24 148-171 9-32 (182)
412 TIGR00554 panK_bact pantothena 94.4 0.034 7.5E-07 55.7 3.4 25 147-171 60-84 (290)
413 PRK05800 cobU adenosylcobinami 94.4 0.15 3.3E-06 46.9 7.5 82 151-239 3-85 (170)
414 cd02029 PRK_like Phosphoribulo 94.3 0.13 2.8E-06 50.6 7.1 21 151-171 1-21 (277)
415 TIGR01069 mutS2 MutS2 family p 94.3 0.029 6.3E-07 64.2 3.1 118 149-273 322-449 (771)
416 cd00984 DnaB_C DnaB helicase C 94.3 0.2 4.3E-06 49.1 8.7 53 149-202 13-65 (242)
417 cd03287 ABC_MSH3_euk MutS3 hom 94.3 0.042 9E-07 53.1 3.7 23 149-171 31-53 (222)
418 PF12775 AAA_7: P-loop contain 94.3 0.13 2.8E-06 51.4 7.3 34 135-171 22-55 (272)
419 PF07728 AAA_5: AAA domain (dy 94.3 0.032 6.9E-07 49.5 2.7 20 152-171 2-21 (139)
420 COG4088 Predicted nucleotide k 94.3 0.078 1.7E-06 49.3 5.2 22 150-171 2-23 (261)
421 PRK07196 fliI flagellum-specif 94.3 0.19 4.1E-06 53.2 8.8 90 149-242 155-257 (434)
422 PRK06820 type III secretion sy 94.3 0.13 2.8E-06 54.6 7.5 22 150-171 164-185 (440)
423 cd01124 KaiC KaiC is a circadi 94.3 0.059 1.3E-06 50.4 4.6 44 152-197 2-45 (187)
424 KOG0729 26S proteasome regulat 94.3 0.18 3.8E-06 48.7 7.6 54 125-180 176-240 (435)
425 cd00464 SK Shikimate kinase (S 94.2 0.033 7.2E-07 50.3 2.8 20 152-171 2-21 (154)
426 cd03243 ABC_MutS_homologs The 94.2 0.033 7.3E-07 53.0 2.9 22 150-171 30-51 (202)
427 PRK10820 DNA-binding transcrip 94.2 0.19 4.1E-06 55.3 9.1 49 123-171 201-249 (520)
428 TIGR01040 V-ATPase_V1_B V-type 94.2 0.15 3.3E-06 54.0 7.9 92 150-241 142-258 (466)
429 PRK13946 shikimate kinase; Pro 94.2 0.035 7.6E-07 52.0 3.0 23 149-171 10-32 (184)
430 TIGR02546 III_secr_ATP type II 94.2 0.18 4E-06 53.5 8.7 89 149-241 145-246 (422)
431 PRK05057 aroK shikimate kinase 94.2 0.04 8.6E-07 51.0 3.3 22 150-171 5-26 (172)
432 PF03205 MobB: Molybdopterin g 94.2 0.037 8.1E-07 49.2 3.0 35 150-186 1-36 (140)
433 COG1936 Predicted nucleotide k 94.2 0.035 7.7E-07 50.2 2.7 20 151-170 2-21 (180)
434 PRK00300 gmk guanylate kinase; 94.2 0.035 7.6E-07 53.0 3.0 23 149-171 5-27 (205)
435 PRK10078 ribose 1,5-bisphospho 94.2 0.043 9.4E-07 51.5 3.5 23 150-172 3-25 (186)
436 PRK10463 hydrogenase nickel in 94.2 0.081 1.8E-06 52.8 5.5 89 148-241 103-195 (290)
437 PRK14738 gmk guanylate kinase; 94.2 0.044 9.5E-07 52.4 3.5 28 144-171 8-35 (206)
438 PRK07960 fliI flagellum-specif 94.1 0.12 2.5E-06 54.9 6.8 23 149-171 175-197 (455)
439 KOG2123 Uncharacterized conser 94.1 0.0062 1.3E-07 58.9 -2.3 98 458-563 18-123 (388)
440 CHL00060 atpB ATP synthase CF1 94.1 0.14 2.9E-06 54.9 7.3 92 150-242 162-274 (494)
441 TIGR01351 adk adenylate kinase 94.1 0.2 4.3E-06 48.1 8.0 20 152-171 2-21 (210)
442 PF00158 Sigma54_activat: Sigm 94.1 0.14 3E-06 47.1 6.6 45 128-172 1-45 (168)
443 PRK14528 adenylate kinase; Pro 94.1 0.26 5.7E-06 46.2 8.5 22 150-171 2-23 (186)
444 TIGR03575 selen_PSTK_euk L-ser 94.1 0.15 3.3E-06 52.3 7.3 20 152-171 2-21 (340)
445 PF03266 NTPase_1: NTPase; In 94.0 0.042 9.1E-07 50.6 3.0 20 152-171 2-21 (168)
446 PF00005 ABC_tran: ABC transpo 94.0 0.06 1.3E-06 47.5 4.0 22 150-171 12-33 (137)
447 PRK09435 membrane ATPase/prote 94.0 0.077 1.7E-06 54.3 5.2 37 135-171 42-78 (332)
448 COG1102 Cmk Cytidylate kinase 94.0 0.03 6.4E-07 50.0 1.8 22 151-172 2-23 (179)
449 cd03217 ABC_FeS_Assembly ABC-t 94.0 0.26 5.6E-06 46.8 8.5 23 150-172 27-49 (200)
450 cd03284 ABC_MutS1 MutS1 homolo 94.0 0.086 1.9E-06 50.8 5.1 22 150-171 31-52 (216)
451 TIGR00962 atpA proton transloc 94.0 0.18 3.9E-06 54.5 8.0 89 150-242 162-265 (501)
452 PLN03187 meiotic recombination 94.0 0.35 7.5E-06 49.9 9.8 66 138-204 115-186 (344)
453 KOG0727 26S proteasome regulat 94.0 0.13 2.9E-06 49.1 6.2 53 125-179 154-217 (408)
454 PLN02348 phosphoribulokinase 94.0 0.07 1.5E-06 55.3 4.7 26 146-171 46-71 (395)
455 PRK14530 adenylate kinase; Pro 93.9 0.041 8.9E-07 53.0 2.9 22 150-171 4-25 (215)
456 TIGR02239 recomb_RAD51 DNA rep 93.9 0.29 6.3E-06 50.0 9.2 67 136-203 83-155 (316)
457 PRK07721 fliI flagellum-specif 93.9 0.19 4.1E-06 53.6 8.1 23 149-171 158-180 (438)
458 COG0237 CoaE Dephospho-CoA kin 93.9 0.048 1E-06 51.6 3.2 23 149-171 2-24 (201)
459 PRK13975 thymidylate kinase; P 93.9 0.046 9.9E-07 51.7 3.1 25 150-176 3-27 (196)
460 PRK12339 2-phosphoglycerate ki 93.9 0.051 1.1E-06 51.4 3.3 23 149-171 3-25 (197)
461 KOG2982 Uncharacterized conser 93.9 0.037 7.9E-07 54.3 2.3 37 458-498 96-132 (418)
462 KOG1532 GTPase XAB1, interacts 93.9 0.046 9.9E-07 52.9 2.9 31 147-179 17-47 (366)
463 COG0703 AroK Shikimate kinase 93.9 0.043 9.3E-07 50.1 2.6 27 151-179 4-30 (172)
464 PF00154 RecA: recA bacterial 93.8 0.15 3.3E-06 51.7 6.9 90 148-242 52-143 (322)
465 COG0396 sufC Cysteine desulfur 93.8 0.44 9.5E-06 45.4 9.3 55 219-274 151-209 (251)
466 COG0542 clpA ATP-binding subun 93.8 0.064 1.4E-06 60.3 4.4 45 125-171 169-213 (786)
467 PF13245 AAA_19: Part of AAA d 93.8 0.085 1.8E-06 41.4 3.9 48 149-198 10-62 (76)
468 PRK04182 cytidylate kinase; Pr 93.8 0.051 1.1E-06 50.5 3.2 21 151-171 2-22 (180)
469 PRK11388 DNA-binding transcrip 93.8 0.21 4.5E-06 56.6 8.7 49 124-172 323-371 (638)
470 PRK06793 fliI flagellum-specif 93.8 0.2 4.4E-06 53.0 7.9 90 149-242 156-258 (432)
471 PRK04196 V-type ATP synthase s 93.8 0.2 4.4E-06 53.6 7.9 91 150-241 144-251 (460)
472 PF08298 AAA_PrkA: PrkA AAA do 93.7 0.18 3.9E-06 51.4 7.1 75 125-204 60-147 (358)
473 cd00544 CobU Adenosylcobinamid 93.7 0.12 2.6E-06 47.6 5.4 78 152-239 2-82 (169)
474 TIGR02782 TrbB_P P-type conjug 93.7 0.29 6.2E-06 49.6 8.6 104 150-267 133-237 (299)
475 PRK05973 replicative DNA helic 93.6 0.11 2.3E-06 50.6 5.1 48 149-198 64-111 (237)
476 PF13086 AAA_11: AAA domain; P 93.6 0.12 2.5E-06 50.1 5.5 48 151-200 19-75 (236)
477 COG0464 SpoVK ATPases of the A 93.6 0.12 2.6E-06 56.7 6.2 94 126-241 242-346 (494)
478 TIGR02788 VirB11 P-type DNA tr 93.6 0.12 2.5E-06 52.8 5.7 107 149-267 144-252 (308)
479 cd00820 PEPCK_HprK Phosphoenol 93.6 0.062 1.3E-06 45.1 3.0 21 150-170 16-36 (107)
480 KOG0473 Leucine-rich repeat pr 93.6 0.0033 7E-08 59.2 -5.1 93 493-588 24-118 (326)
481 PRK13343 F0F1 ATP synthase sub 93.6 0.21 4.5E-06 53.8 7.6 89 150-242 163-266 (502)
482 PRK03731 aroL shikimate kinase 93.6 0.054 1.2E-06 50.0 2.9 22 150-171 3-24 (171)
483 COG1066 Sms Predicted ATP-depe 93.6 0.48 1E-05 49.0 9.7 101 133-240 77-178 (456)
484 TIGR00750 lao LAO/AO transport 93.5 0.09 1.9E-06 53.5 4.6 36 136-171 21-56 (300)
485 PRK13695 putative NTPase; Prov 93.5 0.064 1.4E-06 49.7 3.3 21 151-171 2-22 (174)
486 PRK09825 idnK D-gluconate kina 93.5 0.058 1.3E-06 50.1 3.0 22 150-171 4-25 (176)
487 PRK06995 flhF flagellar biosyn 93.5 0.25 5.4E-06 53.1 8.0 23 149-171 256-278 (484)
488 PRK05537 bifunctional sulfate 93.5 0.1 2.2E-06 57.8 5.2 47 125-171 368-414 (568)
489 PF08477 Miro: Miro-like prote 93.4 0.061 1.3E-06 46.0 2.8 22 152-173 2-23 (119)
490 PRK09281 F0F1 ATP synthase sub 93.4 0.22 4.7E-06 53.9 7.5 87 150-242 163-266 (502)
491 cd02022 DPCK Dephospho-coenzym 93.4 0.051 1.1E-06 50.7 2.5 21 151-171 1-21 (179)
492 COG1703 ArgK Putative periplas 93.4 0.12 2.7E-06 50.9 5.1 37 135-171 37-73 (323)
493 CHL00059 atpA ATP synthase CF1 93.4 0.26 5.6E-06 52.7 7.9 87 150-242 142-245 (485)
494 PRK10923 glnG nitrogen regulat 93.4 0.32 6.8E-06 53.0 9.0 48 125-172 137-184 (469)
495 TIGR00455 apsK adenylylsulfate 93.4 0.58 1.3E-05 43.7 9.6 23 149-171 18-40 (184)
496 PRK14737 gmk guanylate kinase; 93.3 0.073 1.6E-06 49.9 3.3 23 149-171 4-26 (186)
497 PRK14493 putative bifunctional 93.3 0.073 1.6E-06 53.1 3.5 34 150-186 2-35 (274)
498 TIGR02868 CydC thiol reductant 93.3 0.46 1E-05 52.5 10.2 23 149-171 361-383 (529)
499 PRK08769 DNA polymerase III su 93.3 1 2.2E-05 46.0 11.8 37 134-171 12-48 (319)
500 TIGR00176 mobB molybdopterin-g 93.3 0.057 1.2E-06 49.0 2.4 25 151-177 1-25 (155)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-70 Score=613.38 Aligned_cols=442 Identities=28% Similarity=0.390 Sum_probs=376.7
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcc-ccceeeeeeeEecccc--hHHHHHHHHHHhCCC
Q 039772 129 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSY-VKHYFDCHAWIPDISY--ADQILDIVIKFLMPS 205 (608)
Q Consensus 129 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~--~~~l~~~il~~l~~~ 205 (608)
||.+..++++.+.|..++. .++||+||||+||||||+.++|+.. +..+|+.++||+||++ ...++++|+..++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 9999999999999999873 8999999999999999999999987 9999999999999999 999999999999874
Q ss_pred CCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccCchhhhcc--------c--
Q 039772 206 SRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQIEMVTSF--------K-- 275 (608)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~v~~~--------e-- 275 (608)
... ....+.++.+..|.+.|.+|||+|||||||+..+|+.++.++|...+||||++|||+ +.||.. |
T Consensus 239 ~~~--~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs-~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 239 DEE--WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRS-EEVCGRAMGVDYPIEVE 315 (889)
T ss_pred Ccc--cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEecc-HhhhhccccCCcccccc
Confidence 431 123334789999999999999999999999999999999999999889999999999 999976 0
Q ss_pred ----------------------cccccchh-----------hHHhhhcCcC--CCChhhHhhHHHHhhcccccccC---C
Q 039772 276 ----------------------LEDGENIG-----------LDLVLTGGPL--RATYNGWTFLILYHGNISLEENI---G 317 (608)
Q Consensus 276 ----------------------~~~l~~i~-----------Lal~~~g~~L--~~~~~~w~~~~~~l~~~~~~~~~---~ 317 (608)
.+.++++| ||++++|+.| +....+|++ +.+.+.+.+.. .
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~---~~~~l~s~~~~~~~~ 392 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRR---ALNVLKSSLAADFSG 392 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHH---HHccccccccCCCCc
Confidence 34466666 9999999999 555889999 77766655332 3
Q ss_pred CCCCHHHHHhhcccCCCCcchHHHHhHhhhccCCceechhhHHHHHHHcCCCCC-----CHHHHHHHHHHHHHHcCCccc
Q 039772 318 KAVGIPLVLRHFKYCSLPFCLKLCFLYLSVFAAHLEISTRQLYQLWIAEGFIPN-----NSEATAESYLEQLIKEGFVEA 392 (608)
Q Consensus 318 ~~~~i~~~l~~~Sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~~~~-----~~~~~~~~~l~~L~~~sll~~ 392 (608)
..+.++++| ++||+.||++.|.||+|||+||+||.|+++.|+.+|+|+||+.+ ++++.|..|+.+|++++|+..
T Consensus 393 ~~~~i~~iL-klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 393 MEESILPIL-KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred hhhhhHHhh-hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 467899999 99999999999999999999999999999999999999999976 778999999999999999998
Q ss_pred cccCCCCceeEEEcChhHHHHHHHhhc-----ccCeeeccccC------CCCCCCcceEEEEEecccccccccccc-ccc
Q 039772 393 KKRKAGGTINTCSIPGHWRPVLLTVHY-----MVEFIFSPFMD------PKGKSPKKVKRLNAVKRQEDFAYLDYY-DSQ 460 (608)
Q Consensus 393 ~~~~~~g~~~~~~mHdlv~~~a~~~~~-----~e~~~~~~~~~------~~~~~~~~~r~l~~~~~~~~~~~~~~~-~~~ 460 (608)
.... ++...|+|||++|++|.++++ +++.+. ..+ +.......+|+++++.+.... .+... +++
T Consensus 472 ~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv--~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~-~~~~~~~~~ 546 (889)
T KOG4658|consen 472 ERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIV--SDGVGLSEIPQVKSWNSVRRMSLMNNKIEH-IAGSSENPK 546 (889)
T ss_pred cccc--cceeEEEeeHHHHHHHHHHhccccccccceEE--ECCcCccccccccchhheeEEEEeccchhh-ccCCCCCCc
Confidence 7743 566889999999999999999 676655 221 224455789999999988763 33333 789
Q ss_pred ceEEeecCCCC--CCCCCcchHHhhccccceeEeecCCCc-CccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 461 LHSLLCCSPES--RHFDPMDWEKICGMFKLLRVLDLGSLV-LIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 461 LrsL~l~~~~~--~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
|+||.+.++.. . .....+|..++.||||||++|. +.++|.+|+.|.|||||++++|.|+.||.++ ++|.+|+
T Consensus 547 L~tLll~~n~~~l~----~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~ 621 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLL----EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLI 621 (889)
T ss_pred cceEEEeecchhhh----hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhh
Confidence 99999999863 2 4566789999999999999877 7899999999999999999999999999999 9999999
Q ss_pred EEecccc-ccccchhHhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 538 TLDMPFS-YIEHTADEFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 538 ~L~L~~~-~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
+|++..+ .+..+|..+..|++||+|.+..........- ++.+|++|+.+.+.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999999 7777787777799999999988442222111 34446666666655
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.6e-52 Score=489.81 Aligned_cols=507 Identities=16% Similarity=0.151 Sum_probs=366.7
Q ss_pred HHHHHHHHHHHHch-------hhhHHHHHHHhhhhhcCCCcchhhhhccccccchhhhhHHHHHHHHhhccccCCCch--
Q 039772 36 AEVEIVTSWLSEFE-------YDISYILLQKIVEDEIGNPDLATVMDEINCFTCESEKVIDTFINSITQQKSQSGCSE-- 106 (608)
Q Consensus 36 ~el~~v~~wL~~l~-------y~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~~~-- 106 (608)
|||..|..+.++-+ |++++.- ...+.+..+..+.+.. ....++.+++|++|++++++..|++.
T Consensus 85 ~el~~i~~~~~~~~~~v~pvfy~v~p~~------v~~~~g~f~~~f~~~~--~~~~~~~~~~w~~al~~~~~~~g~~~~~ 156 (1153)
T PLN03210 85 NELLEIVRCKEELGQLVIPVFYGLDPSH------VRKQTGDFGEAFEKTC--QNKTEDEKIQWKQALTDVANILGYHSQN 156 (1153)
T ss_pred HHHHHHHHhhhhcCceEEEEEecccHHH------HhhccchHHHHHHHHh--cccchhHHHHHHHHHHHHhCcCceecCC
Confidence 56666666655443 7776632 2334444444444321 22356789999999999999999763
Q ss_pred --hHHHhhhhccccC------CCCCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 107 --DIFDALQGLQTGI------SSSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 107 --~~~~~i~~~~~~~------~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
..++.|+++...+ .++.+..++|||+++++++..+|..+.+++++||||||||+||||||+++|+ ++..+
T Consensus 157 ~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~ 234 (1153)
T PLN03210 157 WPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQ 234 (1153)
T ss_pred CCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhc
Confidence 3555566555433 3445677899999999999999977767799999999999999999999999 89999
Q ss_pred eeeeeeEec---ccc--------------hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 039772 179 FDCHAWIPD---ISY--------------ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWT 241 (608)
Q Consensus 179 F~~~~wv~v---s~~--------------~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 241 (608)
|++.+|+.. +.. ...++.+++.++....+ ..... ...++++|++||+||||||||+
T Consensus 235 F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~~ 307 (1153)
T PLN03210 235 FQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLDD 307 (1153)
T ss_pred CCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCCC
Confidence 999888742 111 23466667776654332 11111 2457888999999999999999
Q ss_pred HhHHHHHhhhcCCCCCCcEEEEEccCchhhhcc-------c-----------------------cccccchh--------
Q 039772 242 IGVWDVIREILPDNHNRSRVLITLTQIEMVTSF-------K-----------------------LEDGENIG-------- 283 (608)
Q Consensus 242 ~~~~~~l~~~~~~~~~gs~IivTTR~~~~v~~~-------e-----------------------~~~l~~i~-------- 283 (608)
.++|+.+.....++++||+||||||+ ++++.. + ++++.+++
T Consensus 308 ~~~l~~L~~~~~~~~~GsrIIiTTrd-~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~ 386 (1153)
T PLN03210 308 QDVLDALAGQTQWFGSGSRIIVITKD-KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAG 386 (1153)
T ss_pred HHHHHHHHhhCccCCCCcEEEEEeCc-HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhC
Confidence 99999999888888999999999999 988753 0 22344444
Q ss_pred ---hHHhhhcCcC-CCChhhHhhHHHHhhcccccccCCCCCCHHHHHhhcccCCCCc-chHHHHhHhhhccCCceechhh
Q 039772 284 ---LDLVLTGGPL-RATYNGWTFLILYHGNISLEENIGKAVGIPLVLRHFKYCSLPF-CLKLCFLYLSVFAAHLEISTRQ 358 (608)
Q Consensus 284 ---Lal~~~g~~L-~~~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~~Sy~~L~~-~~k~cfl~~a~fp~~~~i~~~~ 358 (608)
||++++|+.| ..+..+|.. +++++...+. .+|.++| ++||+.|++ ..|.||++||+||.+..++
T Consensus 387 GLPLAl~vlgs~L~~k~~~~W~~---~l~~L~~~~~----~~I~~~L-~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~--- 455 (1153)
T PLN03210 387 NLPLGLNVLGSYLRGRDKEDWMD---MLPRLRNGLD----GKIEKTL-RVSYDGLNNKKDKAIFRHIACLFNGEKVN--- 455 (1153)
T ss_pred CCcHHHHHHHHHHcCCCHHHHHH---HHHHHHhCcc----HHHHHHH-HHhhhccCccchhhhhheehhhcCCCCHH---
Confidence 9999999999 555899999 7777665433 4799999 999999987 5999999999999986543
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCccccccCCCCceeEEEcChhHHHHHHHhhcccC-------eeec--ccc
Q 039772 359 LYQLWIAEGFIPNNSEATAESYLEQLIKEGFVEAKKRKAGGTINTCSIPGHWRPVLLTVHYMVE-------FIFS--PFM 429 (608)
Q Consensus 359 li~~w~a~g~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~g~~~~~~mHdlv~~~a~~~~~~e~-------~~~~--~~~ 429 (608)
.+..|.+.+... ++..++.|+++|||+... ..++|||++|+||++++.+++ +..+ ++.
T Consensus 456 ~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~ 522 (1153)
T PLN03210 456 DIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDIC 522 (1153)
T ss_pred HHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHH
Confidence 356676655442 455699999999998753 249999999999999987763 1110 000
Q ss_pred C--CCCCCCcceEEEEEecccccccccc--cc--cccceEEeecCCCCCCC-------C-------------------Cc
Q 039772 430 D--PKGKSPKKVKRLNAVKRQEDFAYLD--YY--DSQLHSLLCCSPESRHF-------D-------------------PM 477 (608)
Q Consensus 430 ~--~~~~~~~~~r~l~~~~~~~~~~~~~--~~--~~~LrsL~l~~~~~~~~-------~-------------------~~ 477 (608)
+ .......+++++++..+........ .+ +.+|+.|.+..+..... . ..
T Consensus 523 ~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~ 602 (1153)
T PLN03210 523 DVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR 602 (1153)
T ss_pred HHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC
Confidence 0 1134456778887765544321111 11 55666665543210000 0 01
Q ss_pred chHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCC-CCCcCChHHHhcCccCcEEecccc-ccccchhHhcc
Q 039772 478 DWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIP-SLKSLPSSLLSNLLNLYTLDMPFS-YIEHTADEFWK 555 (608)
Q Consensus 478 ~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~-~i~~LP~si~~~L~~L~~L~L~~~-~l~~lP~~i~~ 555 (608)
.+|..| .+.+|+.|++.++.++.+|.++..+++|++|+|+++ .++.+|. + +.+++|++|+|++| .+..+|.++++
T Consensus 603 ~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 603 CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEecCCCCccccchhhhc
Confidence 122222 356788888888888888888888999999999876 5778886 7 88999999999998 88899999999
Q ss_pred cccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 556 MNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 556 L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
|++|++|++++ |..+..+| ++ +|++|+.++++
T Consensus 680 L~~L~~L~L~~-c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 680 LNKLEDLDMSR-CENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred cCCCCEEeCCC-CCCcCccCCcC-CCCCCCEEeCC
Confidence 99999999998 77788888 66 68888888887
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-36 Score=309.19 Aligned_cols=234 Identities=30% Similarity=0.455 Sum_probs=189.1
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc--hHHHHHHHHHHhCCCCCc
Q 039772 131 LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY--ADQILDIVIKFLMPSSRL 208 (608)
Q Consensus 131 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~l~~~il~~l~~~~~~ 208 (608)
||.++++|.+.|....++.++|+|+||||+||||||+++|++..+..+|+.++|+.+++. ...++..|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999996677999999999999999999999996669999999999999887 899999999999986421
Q ss_pred ccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccCchhhhcc--------c-----
Q 039772 209 SEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQIEMVTSF--------K----- 275 (608)
Q Consensus 209 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~v~~~--------e----- 275 (608)
. ....+.++....+++.|.++++||||||||+...|+.+...++.+..||+||||||+ ..++.. +
T Consensus 81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~-~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRD-RSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESC-GGGGTTHHSCEEEEECSS--
T ss_pred c-ccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence 0 145678889999999999999999999999999999999988888889999999999 888753 0
Q ss_pred ---------------c----ccccchh-----------hHHhhhcCcC--CCChhhHhhHHHHhhcccccccC--CCCCC
Q 039772 276 ---------------L----EDGENIG-----------LDLVLTGGPL--RATYNGWTFLILYHGNISLEENI--GKAVG 321 (608)
Q Consensus 276 ---------------~----~~l~~i~-----------Lal~~~g~~L--~~~~~~w~~~~~~l~~~~~~~~~--~~~~~ 321 (608)
. +.+.+++ ||++++|++| +....+|++ +++++...... .....
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~---~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEE---ALEELENSLRESRDYDRS 235 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHH---HHHHHHHCHTCSSGSCHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc
Confidence 1 2233332 9999999999 446899999 66665554432 23568
Q ss_pred HHHHHhhcccCCCCcchHHHHhHhhhccCCceechhhHHHHHHHcCCCC
Q 039772 322 IPLVLRHFKYCSLPFCLKLCFLYLSVFAAHLEISTRQLYQLWIAEGFIP 370 (608)
Q Consensus 322 i~~~l~~~Sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~~~ 370 (608)
+..++ .+||+.||++.|+||+|||+||+++.|+++.++++|+++||+.
T Consensus 236 ~~~~l-~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 236 VFSAL-ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHH-HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccc-eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 99999 9999999999999999999999999999999999999999985
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=5.6e-15 Score=129.89 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=93.2
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCcc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLR 513 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr 513 (608)
...+.++.++.+.... +++.+ +.+|..|.++++... .+|..+++++.||.|+++-+.+..+|.++|.++-|.
T Consensus 32 ~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred hhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 3455666666555542 23333 566666666665553 344555666666666666666666666666666666
Q ss_pred EEEecCCCCC--cCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc-
Q 039772 514 YLKLNIPSLK--SLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL- 589 (608)
Q Consensus 514 ~L~l~~~~i~--~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~- 589 (608)
.|+|.+|++. .+|..+ ..++-|+.|.|++|.++.+|..+|+|++|+.|.+.+|. +.++| ++|.|..|+.+++.
T Consensus 106 vldltynnl~e~~lpgnf-f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd--ll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNF-FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND--LLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcch-hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc--hhhCcHHHHHHHHHHHHhccc
Confidence 6666665543 566655 55555666666666666666667777777776666654 55666 66666666666665
Q ss_pred C-CCcccchhcCCC
Q 039772 590 H-PCCCTEDLLGRL 602 (608)
Q Consensus 590 ~-~~~~~~~~l~~L 602 (608)
+ ....+++ ++++
T Consensus 183 nrl~vlppe-l~~l 195 (264)
T KOG0617|consen 183 NRLTVLPPE-LANL 195 (264)
T ss_pred ceeeecChh-hhhh
Confidence 1 2234455 5544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.39 E-value=1.2e-14 Score=150.58 Aligned_cols=147 Identities=22% Similarity=0.148 Sum_probs=126.3
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
+..|.+|.+++..... .-+|..+..+.+|+-+|++.|.+..+|+.+.++.+||-|+||+|.|++|.-.+ +...+|+
T Consensus 196 mtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-~~W~~lE 271 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE-GEWENLE 271 (1255)
T ss_pred chhhhhhhcccccchh---hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-HHHhhhh
Confidence 4455556666554432 34667788899999999999999999999999999999999999999999888 9999999
Q ss_pred EEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc-CCCcccchhcCCCCCCCCC
Q 039772 538 TLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL-HPCCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 538 ~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~-~~~~~~~~~l~~L~~L~~L 608 (608)
+|+++.|++..||+.+.+|++|+.|++.+|......+| +||+|..|+.|... +.-..+|+||..+..|++|
T Consensus 272 tLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 272 TLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred hhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence 99999999999999999999999999999998888899 99999999999988 4556778888888888765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.37 E-value=6.3e-14 Score=145.21 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=107.1
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 514 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~ 514 (608)
.++.||++..+.... +.... ++.||++.+..+.... +-+|+.+-.++-|.+|||+.|++.+.|..+..-+++-.
T Consensus 55 qkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKn---sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKN---SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhcccccc---CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 467778887766542 33333 8899999988876543 34556667899999999999999999999999999999
Q ss_pred EEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCC
Q 039772 515 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 515 L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~ 568 (608)
|+||+|+|..+|.++|-+|..|-.|||++|.++.||+.+.+|.+|+.|.|++|.
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 999999999999999889999999999999999999999999999999999854
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=7.1e-14 Score=122.99 Aligned_cols=115 Identities=23% Similarity=0.170 Sum_probs=71.4
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc--cCCcccCCCCCccEEEecCCCCCcCChHHHhcCcc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~ 535 (608)
+++||-|.+.-+.. ...|.-|++++-|++|||.++.+. .+|..+..|..||.|.|+.|++.-+|+.+ ++|++
T Consensus 78 l~klr~lnvgmnrl-----~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv-g~lt~ 151 (264)
T KOG0617|consen 78 LPKLRILNVGMNRL-----NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV-GKLTN 151 (264)
T ss_pred chhhhheecchhhh-----hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh-hhhcc
Confidence 55666665554443 245555666666666666666654 56666666666666666666666666666 66666
Q ss_pred CcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCC
Q 039772 536 LYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSL 580 (608)
Q Consensus 536 L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L 580 (608)
||.|.++.|.+-++|..+|.|+.|+.|++.+|. +..+| ++++|
T Consensus 152 lqil~lrdndll~lpkeig~lt~lrelhiqgnr--l~vlppel~~l 195 (264)
T KOG0617|consen 152 LQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR--LTVLPPELANL 195 (264)
T ss_pred eeEEeeccCchhhCcHHHHHHHHHHHHhcccce--eeecChhhhhh
Confidence 666666666666666666666666666666654 55556 66553
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.24 E-value=1.5e-11 Score=145.68 Aligned_cols=104 Identities=25% Similarity=0.350 Sum_probs=47.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-cCCcccCCCCCccEEEecCCCCC-cCChHHHhcCcc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPSSLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~~Lr~L~l~~~~i~-~LP~si~~~L~~ 535 (608)
+++|++|.+.++... ...+..+..+++|++|++++|.+. .+|..++++.+|++|++++|.+. .+|..+ +++++
T Consensus 139 l~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~ 213 (968)
T PLN00113 139 IPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKS 213 (968)
T ss_pred cCCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCC
Confidence 444444444444332 223334444455555555544433 44444444444555544444433 344444 44444
Q ss_pred CcEEeccccccc-cchhHhcccccCcEEEecC
Q 039772 536 LYTLDMPFSYIE-HTADEFWKMNKLRHLNFGS 566 (608)
Q Consensus 536 L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~ 566 (608)
|++|+|++|.+. .+|..++++++|++|++++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 444444444332 3444444444444444444
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.18 E-value=4.3e-11 Score=141.90 Aligned_cols=164 Identities=24% Similarity=0.184 Sum_probs=107.6
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-cCCcccCCCCCcc
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-QYPSGIENLFLLR 513 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~~Lr 513 (608)
.+++.|.+..+......+..+ +++|++|.+.+|... ...+..+..+++|+.|++++|.+. .+|..++.+++|+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV----GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc----CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 456666666665443344444 667777777666554 345566677777777777777765 6677777777777
Q ss_pred EEEecCCCCC-cCChHHHhcCccCcEEeccccccc-cchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeeccC
Q 039772 514 YLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYIE-HTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISALH 590 (608)
Q Consensus 514 ~L~l~~~~i~-~LP~si~~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~~ 590 (608)
+|++++|.+. .+|.++ +++++|++|++++|.+. .+|.+++++++|++|++++|... ..+| .++++..|+.++++.
T Consensus 240 ~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred EEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhHcCCCCCcEEECCC
Confidence 7777777665 667777 77777777777777543 67777777777777777775432 2366 677777777777762
Q ss_pred C---CcccchhcCCCCCCCC
Q 039772 591 P---CCCTEDLLGRLPNLQN 607 (608)
Q Consensus 591 ~---~~~~~~~l~~L~~L~~ 607 (608)
+ +..+.. ++.+++|+.
T Consensus 318 n~~~~~~~~~-~~~l~~L~~ 336 (968)
T PLN00113 318 NNFTGKIPVA-LTSLPRLQV 336 (968)
T ss_pred CccCCcCChh-HhcCCCCCE
Confidence 2 222333 666666664
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.91 E-value=5e-11 Score=118.38 Aligned_cols=123 Identities=22% Similarity=0.257 Sum_probs=81.7
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
+..|.-|.+..+.. ..+|+.++.+.+|..|+|..+.+..+| .++.+..|..|.++.|+|+.+|..++.+|.+|.
T Consensus 182 m~~L~~ld~~~N~L-----~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLL-----ETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLL 255 (565)
T ss_pred HHHHHhcccchhhh-----hcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccce
Confidence 44555554444433 245556666666667777777666666 566666677777777777777777722677777
Q ss_pred EEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 538 TLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 538 ~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
+|||++|+++++|+++..|.+|.+|++++|. +..+| ++|+| +|..+.+.
T Consensus 256 vLDLRdNklke~Pde~clLrsL~rLDlSNN~--is~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 256 VLDLRDNKLKEVPDEICLLRSLERLDLSNND--ISSLPYSLGNL-HLKFLALE 305 (565)
T ss_pred eeeccccccccCchHHHHhhhhhhhcccCCc--cccCCcccccc-eeeehhhc
Confidence 7777777777777777777777777777765 55577 77777 66666654
No 11
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=5.7e-08 Score=114.64 Aligned_cols=276 Identities=14% Similarity=0.137 Sum_probs=150.7
Q ss_pred ccCCCCCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHH
Q 039772 117 TGISSSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQ 193 (608)
Q Consensus 117 ~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~ 193 (608)
+...++.....+|-|+.-.+.+ ... ...+++.|.|++|.||||++..... . ++.++|+++... +..
T Consensus 5 ~k~~~p~~~~~~~~R~rl~~~l----~~~-~~~~~~~v~apaG~GKTtl~~~~~~--~----~~~~~w~~l~~~d~~~~~ 73 (903)
T PRK04841 5 SKLSRPVRLHNTVVRERLLAKL----SGA-NNYRLVLVTSPAGYGKTTLISQWAA--G----KNNLGWYSLDESDNQPER 73 (903)
T ss_pred cccCCCCCccccCcchHHHHHH----hcc-cCCCeEEEECCCCCCHHHHHHHHHH--h----CCCeEEEecCcccCCHHH
Confidence 3445566667888777555544 332 3478999999999999999999886 2 226889998644 666
Q ss_pred HHHHHHHHhCCCCCc--cc-------ccccCHHHHHHHHHHHhC--CCcEEEEEcCCCCHh---HHHHHhhhcCCCCCCc
Q 039772 194 ILDIVIKFLMPSSRL--SE-------IMDKNYEMKKIILHEYLM--TKRYLIVIEDVWTIG---VWDVIREILPDNHNRS 259 (608)
Q Consensus 194 l~~~il~~l~~~~~~--~~-------~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gs 259 (608)
+...++..+....+. +. ....+.......+...+. +.+++|||||+...+ ..+.+...+....++.
T Consensus 74 f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~ 153 (903)
T PRK04841 74 FASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENL 153 (903)
T ss_pred HHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCe
Confidence 667777776421110 00 011223333444444443 689999999996542 2233433334445567
Q ss_pred EEEEEccCchh-h--hccc-cccccchh-------------hHHhhhcCcCCC--------ChhhHhhHHHHhh-cc---
Q 039772 260 RVLITLTQIEM-V--TSFK-LEDGENIG-------------LDLVLTGGPLRA--------TYNGWTFLILYHG-NI--- 310 (608)
Q Consensus 260 ~IivTTR~~~~-v--~~~e-~~~l~~i~-------------Lal~~~g~~L~~--------~~~~w~~~~~~l~-~~--- 310 (608)
++|||||. .. . .... ...+.+|+ +.-..+|..+.. ..+-|--++..+- ..
T Consensus 154 ~lv~~sR~-~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 154 TLVVLSRN-LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred EEEEEeCC-CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 88899998 31 1 1110 00011111 111122222200 0112222111110 00
Q ss_pred cccccC------C-CCCCHHHHHhhcccCCCCcchHHHHhHhhhccCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHH
Q 039772 311 SLEENI------G-KAVGIPLVLRHFKYCSLPFCLKLCFLYLSVFAAHLEISTRQLYQLWIAEGFIPNNSEATAESYLEQ 383 (608)
Q Consensus 311 ~~~~~~------~-~~~~i~~~l~~~Sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~l~~ 383 (608)
.+.... . ....+...+..-.|+.||++.++.++.+|+++ . ++.+-+-.+. | .+.+...+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~l~~~l~---~------~~~~~~~L~~ 300 (903)
T PRK04841 233 NSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDALIVRVT---G------EENGQMRLEE 300 (903)
T ss_pred CCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHHHHHHHc---C------CCcHHHHHHH
Confidence 000000 0 12346665523448999999999999999986 3 3332221111 2 1125788999
Q ss_pred HHHcCCccccccCCCCceeEEEcChhHHHHHHHhhc
Q 039772 384 LIKEGFVEAKKRKAGGTINTCSIPGHWRPVLLTVHY 419 (608)
Q Consensus 384 L~~~sll~~~~~~~~g~~~~~~mHdlv~~~a~~~~~ 419 (608)
|.+.+++..... +....|++|++++++.+....
T Consensus 301 l~~~~l~~~~~~---~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 301 LERQGLFIQRMD---DSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHCCCeeEeec---CCCCEEehhHHHHHHHHHHHH
Confidence 999999753221 111468999999999987753
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.86 E-value=5.4e-10 Score=111.13 Aligned_cols=143 Identities=22% Similarity=0.179 Sum_probs=108.5
Q ss_pred eEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEE
Q 039772 439 VKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLK 516 (608)
Q Consensus 439 ~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~ 516 (608)
+..+.+..+... ..|..+ ++.+.|..+..+... ++++..++.+++|..|+|+++.+..+|..++.+..|+.|+
T Consensus 390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i----sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI----SFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLN 464 (565)
T ss_pred eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc----ccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheec
Confidence 445555555443 133333 555555555544443 5788889999999999999999999999999999999999
Q ss_pred ecCCCCCcCChHHHhcCccCcEEeccccccccchhH-hcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 517 LNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADE-FWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 517 l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
++.|.+..+|+-+ -.++-|+++-.+++++..+|.+ +++|.+|..|++..|. +..+| .+|++++|+++.+.
T Consensus 465 lS~NrFr~lP~~~-y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd--lq~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 465 LSFNRFRMLPECL-YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND--LQQIPPILGNMTNLRHLELD 536 (565)
T ss_pred ccccccccchHHH-hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc--hhhCChhhccccceeEEEec
Confidence 9999988888877 6777777777777788888775 8888888888888765 67788 88888888888887
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.84 E-value=5.8e-10 Score=115.71 Aligned_cols=148 Identities=20% Similarity=0.152 Sum_probs=118.3
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLL 512 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L 512 (608)
..++.+|.+..+.........+ +..|+-|.++.+... .+-.+.++..++|++|+|+.|.+.++| .++..|..|
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~----rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ----RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchhhhh----eeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 4567777777766653333333 778888888888776 455677888899999999999998876 577788899
Q ss_pred cEEEecCCCCCcCChHHHhcCccCcEEecccccc----ccchhHhcccccCcEEEecCCCCCCcCCC--CCCCCccccee
Q 039772 513 RYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYI----EHTADEFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFI 586 (608)
Q Consensus 513 r~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l----~~lP~~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l 586 (608)
..|+|+.|.|..|.+..|-.+.+|++|||+.|.+ +.-...+..|++|+.|.+.+|. ++.+| .+..|..|++|
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq--lk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ--LKSIPKRAFSGLEALEHL 421 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce--eeecchhhhccCccccee
Confidence 9999999999999887778899999999999844 3434457779999999999987 88888 78889999999
Q ss_pred ecc
Q 039772 587 SAL 589 (608)
Q Consensus 587 ~~~ 589 (608)
+++
T Consensus 422 dL~ 424 (873)
T KOG4194|consen 422 DLG 424 (873)
T ss_pred cCC
Confidence 998
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.84 E-value=1e-08 Score=122.63 Aligned_cols=142 Identities=23% Similarity=0.176 Sum_probs=109.4
Q ss_pred CcceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCc-CccCCcccCCCCCcc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLV-LIQYPSGIENLFLLR 513 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~lp~~i~~L~~Lr 513 (608)
+.++|.|.+..+... ..|... +.+|+.|.+.++... .++..+..+++|+.|+|+++. +..+| .++.+++|+
T Consensus 588 p~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~-----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le 660 (1153)
T PLN03210 588 PPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE-----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLE 660 (1153)
T ss_pred CcccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc-----ccccccccCCCCCEEECCCCCCcCcCC-ccccCCccc
Confidence 456777777766544 233334 778888888887654 334456789999999999876 66777 488899999
Q ss_pred EEEecCC-CCCcCChHHHhcCccCcEEecccc-ccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 514 YLKLNIP-SLKSLPSSLLSNLLNLYTLDMPFS-YIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 514 ~L~l~~~-~i~~LP~si~~~L~~L~~L~L~~~-~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
+|++++| .+..+|.++ ++|++|+.|++++| .+..+|..+ ++++|++|++++ |..+..+|.+ +.+|+.++++
T Consensus 661 ~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsg-c~~L~~~p~~--~~nL~~L~L~ 733 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSG-CSRLKSFPDI--STNISWLDLD 733 (1153)
T ss_pred EEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCC-CCCccccccc--cCCcCeeecC
Confidence 9999987 678999999 99999999999999 899999876 899999999998 6666667722 2344555555
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=6.9e-09 Score=118.46 Aligned_cols=141 Identities=24% Similarity=0.201 Sum_probs=105.1
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCc--CccCCc-ccCCCCCccEEEecCC-CCCcCChHHHhcC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLV--LIQYPS-GIENLFLLRYLKLNIP-SLKSLPSSLLSNL 533 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~--l~~lp~-~i~~L~~Lr~L~l~~~-~i~~LP~si~~~L 533 (608)
....|...+.++.... .... ...+.|+.|-+.++. +..++. .+..+++||.|||++| .+.+||++| ++|
T Consensus 522 ~~~~rr~s~~~~~~~~-----~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEH-----IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GEL 594 (889)
T ss_pred hhheeEEEEeccchhh-----ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhh
Confidence 6677877777766541 1111 222368888888875 555554 4778999999999987 788999999 999
Q ss_pred ccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCC-CCCcccceeecc-----CCCcccchhcCCCCCCCC
Q 039772 534 LNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYC-GSLENLNFISAL-----HPCCCTEDLLGRLPNLQN 607 (608)
Q Consensus 534 ~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i-~~L~~L~~l~~~-----~~~~~~~~~l~~L~~L~~ 607 (608)
-+|++|+++++.+..||.++++|++|.||++..+ ..+..+|++ ..|++|+.+.+. .....+.+ +.+|++|+.
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~-~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ 672 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT-GRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLEN 672 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccc-cccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhh
Confidence 9999999999999999999999999999999983 344545744 448888888776 22445556 666666654
No 16
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.76 E-value=7.7e-08 Score=102.20 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=94.5
Q ss_pred CCCCCCCceechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhcCccccceee--eeeeEecccc--hHHH
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFD--CHAWIPDISY--ADQI 194 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~--~~~l 194 (608)
+...+..++||+++++++...|... ......+.|+|++|+|||++++.+++ ......+ ..++++.... ...+
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCHHHH
Confidence 3446678999999999999998543 23345678999999999999999999 4443332 2455554443 7788
Q ss_pred HHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC--CCcEEEEEcCCCCHh------HHHHHhhhcCCCCCCcE--EEEE
Q 039772 195 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIEDVWTIG------VWDVIREILPDNHNRSR--VLIT 264 (608)
Q Consensus 195 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~--IivT 264 (608)
+..|+.++..... + ....+.++....+.+.+. ++.++||||+++... .+..+...+.. .++++ +|.+
T Consensus 103 ~~~i~~~l~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i 179 (394)
T PRK00411 103 FSEIARQLFGHPP-P-SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGI 179 (394)
T ss_pred HHHHHHHhcCCCC-C-CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEE
Confidence 8899999876221 1 133456777777777775 456899999997642 34444333222 22444 5666
Q ss_pred ccC
Q 039772 265 LTQ 267 (608)
Q Consensus 265 TR~ 267 (608)
+..
T Consensus 180 ~~~ 182 (394)
T PRK00411 180 SSD 182 (394)
T ss_pred ECC
Confidence 655
No 17
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.69 E-value=2.6e-07 Score=97.03 Aligned_cols=119 Identities=17% Similarity=0.094 Sum_probs=81.6
Q ss_pred CCCCCCCceechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhcCccccceee------eeeeEecccc--
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFD------CHAWIPDISY-- 190 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~------~~~wv~vs~~-- 190 (608)
+...+..++||++++++|...|... ......+.|+|++|+|||++++++++ .+....+ ..+|+.....
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~--~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMK--ELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhccCCceEEEEEECCCCCC
Confidence 4455678999999999999998752 22345789999999999999999998 3332211 2456665444
Q ss_pred hHHHHHHHHHHhCC-CCCcccccccCHHHHHHHHHHHhC--CCcEEEEEcCCCCH
Q 039772 191 ADQILDIVIKFLMP-SSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIEDVWTI 242 (608)
Q Consensus 191 ~~~l~~~il~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~ 242 (608)
...++..|+.++.. ....+ ....+..+....+.+.+. +++++||||+++..
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 67788888888842 11111 123345556666666663 56889999999766
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.68 E-value=2.6e-09 Score=116.56 Aligned_cols=125 Identities=24% Similarity=0.243 Sum_probs=92.6
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
++.|..|.+-++... ...-+.+..+++|++|+|++|.+..+| ..+.+|..|+.|+|+||.++.||.++ .++..|
T Consensus 358 ~~~Lq~LylanN~Lt----d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv-a~~~~L 432 (1081)
T KOG0618|consen 358 HAALQELYLANNHLT----DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTV-ANLGRL 432 (1081)
T ss_pred hHHHHHHHHhcCccc----ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHH-Hhhhhh
Confidence 344455555555544 344466778888888888888888888 45667888888888888888888888 888888
Q ss_pred cEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 537 YTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
++|...+|++..+| .+.+++.|+.++++.|..+...+| ...+ .+|++|+++
T Consensus 433 ~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 433 HTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLS 484 (1081)
T ss_pred HHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeecc
Confidence 88888888888888 688888888888888775555556 4443 677788877
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.65 E-value=3.5e-09 Score=115.64 Aligned_cols=149 Identities=18% Similarity=0.113 Sum_probs=111.7
Q ss_pred CCcceEEEEEecccccccccccc---cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-cCCcccCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY---DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-QYPSGIENLF 510 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~---~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~ 510 (608)
....++.|.++.+.......... ...++.|....+... ..+...=..++.|..|.+.+|.+. ...+-+.+.+
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~----~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS----TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc----ccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 34567777777776652111111 222444443333322 111111134566788888888876 4444677899
Q ss_pred CccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 511 LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 511 ~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
|||.|+|++|.+.++|.+-+.+|..|+.|+|+||.+..||+++.++..|++|...+|+ +..+|++..|..|+.++++
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~--l~~fPe~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ--LLSFPELAQLPQLKVLDLS 460 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc--eeechhhhhcCcceEEecc
Confidence 9999999999999999987799999999999999999999999999999999999988 7889988899999999999
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.58 E-value=8e-08 Score=108.15 Aligned_cols=137 Identities=14% Similarity=0.099 Sum_probs=76.0
Q ss_pred CcceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEE
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 515 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L 515 (608)
+..++.|.+..+.... .+....++|++|.+.+|... .++. .+ ..+|+.|+|++|.+..+|..+. .+|++|
T Consensus 198 p~~L~~L~Ls~N~Lts-LP~~l~~nL~~L~Ls~N~Lt----sLP~-~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 198 PEQITTLILDNNELKS-LPENLQGNIKTLYANSNQLT----SIPA-TL--PDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred ccCCcEEEecCCCCCc-CChhhccCCCEEECCCCccc----cCCh-hh--hccccEEECcCCccCcCChhHh--CCCCEE
Confidence 4456777776665551 22222567777777766543 1221 11 2356667777776666666553 356666
Q ss_pred EecCCCCCcCChHHHhcCccCcEEeccccccccchhHhc-------------------ccccCcEEEecCCCCCCcCCC-
Q 039772 516 KLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFW-------------------KMNKLRHLNFGSITLPAHPGK- 575 (608)
Q Consensus 516 ~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~-------------------~L~~L~~L~l~~~~~~~~~lP- 575 (608)
++++|++..+|.++ . .+|++|++++|++..+|..+. -.++|+.|++++|. +..+|
T Consensus 268 ~Ls~N~L~~LP~~l-~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~--Lt~LP~ 342 (754)
T PRK15370 268 DLFHNKISCLPENL-P--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA--LTSLPA 342 (754)
T ss_pred ECcCCccCcccccc-C--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc--cccCCh
Confidence 66666666666655 4 356666666666665554332 11345555555543 34455
Q ss_pred CCCCCcccceeecc
Q 039772 576 YCGSLENLNFISAL 589 (608)
Q Consensus 576 ~i~~L~~L~~l~~~ 589 (608)
.+. .+|+.|+++
T Consensus 343 ~l~--~sL~~L~Ls 354 (754)
T PRK15370 343 SLP--PELQVLDVS 354 (754)
T ss_pred hhc--CcccEEECC
Confidence 443 355666665
No 21
>PF05729 NACHT: NACHT domain
Probab=98.58 E-value=1.4e-07 Score=86.99 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=64.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccce----eeeeeeEecccc-----hHHHHHHHHHHhCCCCCcccccccCHHHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHY----FDCHAWIPDISY-----ADQILDIVIKFLMPSSRLSEIMDKNYEMKK 220 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~-----~~~l~~~il~~l~~~~~~~~~~~~~~~~~~ 220 (608)
|++.|+|.+|+||||+++.++.+-.-... +...+|++.... ...+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-------APIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-------hhhHH--
Confidence 57899999999999999999884211111 455667765554 2244444444443211 11111
Q ss_pred HHHHHHh-CCCcEEEEEcCCCCHhH---------HHH-HhhhcCC-CCCCcEEEEEccC
Q 039772 221 IILHEYL-MTKRYLIVIEDVWTIGV---------WDV-IREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 221 ~~l~~~L-~~kr~LlVLDdv~~~~~---------~~~-l~~~~~~-~~~gs~IivTTR~ 267 (608)
.+...+ ..++++||+|++++... +.. +...++. ..++++||||||.
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 222222 56899999999986522 222 2233332 3568999999999
No 22
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.57 E-value=2.9e-07 Score=81.28 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccce-----eeeeeeEecccc--hHHHHHHHHHHhCCCCCcccccccCHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHY-----FDCHAWIPDISY--ADQILDIVIKFLMPSSRLSEIMDKNYEMKKI 221 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~--~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~ 221 (608)
-+++.|+|.+|+|||++++.+.+ ..... -..++|+..... ...+.+.|+..+..... ...+..++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLAR--QLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHH--HHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHH--HhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHH
Confidence 46889999999999999999998 44332 344678887766 89999999999997653 3456777778
Q ss_pred HHHHHhCCCc-EEEEEcCCCCH---hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 222 ILHEYLMTKR-YLIVIEDVWTI---GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 222 ~l~~~L~~kr-~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.+.+.+...+ .+||+|++... +.++.+..... ..+.++|++-+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 8888887654 59999999654 34455544433 557778777655
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=8.7e-08 Score=88.23 Aligned_cols=124 Identities=23% Similarity=0.241 Sum_probs=45.7
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
..+++.|.+.++... .+...-..+.+|++|+|++|.++.++ .+..|++|+.|++++|.|+.+++.+...+++|+
T Consensus 18 ~~~~~~L~L~~n~I~-----~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-----TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccc-----cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 456788888888764 22222225678888888888888775 577788888888888888888765513588888
Q ss_pred EEeccccccccchh--HhcccccCcEEEecCCCCCCcCCC-----CCCCCcccceeecc
Q 039772 538 TLDMPFSYIEHTAD--EFWKMNKLRHLNFGSITLPAHPGK-----YCGSLENLNFISAL 589 (608)
Q Consensus 538 ~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~lP-----~i~~L~~L~~l~~~ 589 (608)
+|++++|.+..+-+ .+..+++|++|++.+|. ....| -+..+.+|+.++-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP--v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP--VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G--GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCc--ccchhhHHHHHHHHcChhheeCCE
Confidence 88888886665533 56778888888888854 22222 12226666666543
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.56 E-value=1.4e-06 Score=95.46 Aligned_cols=281 Identities=16% Similarity=0.140 Sum_probs=160.9
Q ss_pred ccCCCCCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHH
Q 039772 117 TGISSSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQ 193 (608)
Q Consensus 117 ~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~ 193 (608)
+...+|..+.+.|-|. ++.+.|.... +.+++.|..++|.|||||+-.... +.. .=..+.|++..+. +.+
T Consensus 10 sk~~~P~~~~~~v~R~----rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~r 81 (894)
T COG2909 10 SKLVRPVRPDNYVVRP----RLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPAR 81 (894)
T ss_pred cccCCCCCcccccccH----HHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHH
Confidence 3344455566666664 4555555542 479999999999999999988865 222 2234899998777 888
Q ss_pred HHHHHHHHhCCCCCc--cc-------ccccCHHHHHHHHHHHhCC--CcEEEEEcCCCCH---hHHHHHhhhcCCCCCCc
Q 039772 194 ILDIVIKFLMPSSRL--SE-------IMDKNYEMKKIILHEYLMT--KRYLIVIEDVWTI---GVWDVIREILPDNHNRS 259 (608)
Q Consensus 194 l~~~il~~l~~~~~~--~~-------~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs 259 (608)
+.+.++..+....+. ++ ....+...+...+..-+.+ ++..+||||..-. .--..+.-.+....++-
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l 161 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENL 161 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCe
Confidence 888888888753221 00 1233444555555555543 6899999997532 22333333344455678
Q ss_pred EEEEEccC-c-hhhhccc-cccccchh-------------hHHhhhcCcC--------CCChhhHhhHHHHhh-cccccc
Q 039772 260 RVLITLTQ-I-EMVTSFK-LEDGENIG-------------LDLVLTGGPL--------RATYNGWTFLILYHG-NISLEE 314 (608)
Q Consensus 260 ~IivTTR~-~-~~v~~~e-~~~l~~i~-------------Lal~~~g~~L--------~~~~~~w~~~~~~l~-~~~~~~ 314 (608)
..|||||+ | -.++..- .+++-+|+ +--...|..+ -...+-|-.++...- .....-
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~ 241 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNT 241 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCC
Confidence 99999999 1 1222220 12222222 1111111222 122455665322110 111000
Q ss_pred cC----CC----CCCHHHHHhhcccCCCCcchHHHHhHhhhccCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 039772 315 NI----GK----AVGIPLVLRHFKYCSLPFCLKLCFLYLSVFAAHLEISTRQLYQLWIAEGFIPNNSEATAESYLEQLIK 386 (608)
Q Consensus 315 ~~----~~----~~~i~~~l~~~Sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~l~~L~~ 386 (608)
+. .. ...+.+.|-.--++.||+++|..++-||+++.- .+.|+..- +-++.+...+++|.+
T Consensus 242 ~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L--------tg~~ng~amLe~L~~ 309 (894)
T COG2909 242 SAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL--------TGEENGQAMLEELER 309 (894)
T ss_pred cHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH--------hcCCcHHHHHHHHHh
Confidence 00 11 112222222334689999999999999998642 12233222 223447888999999
Q ss_pred cCCccccccCCCCceeEEEcChhHHHHHHHhhcc
Q 039772 387 EGFVEAKKRKAGGTINTCSIPGHWRPVLLTVHYM 420 (608)
Q Consensus 387 ~sll~~~~~~~~g~~~~~~mHdlv~~~a~~~~~~ 420 (608)
++|+-..-. +...+|+.|.++.+|.+.....
T Consensus 310 ~gLFl~~Ld---d~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 310 RGLFLQRLD---DEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCCceeeec---CCCceeehhHHHHHHHHhhhcc
Confidence 998854321 1226799999999999877665
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.50 E-value=3.2e-07 Score=103.33 Aligned_cols=124 Identities=17% Similarity=0.119 Sum_probs=95.2
Q ss_pred ceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEe
Q 039772 438 KVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKL 517 (608)
Q Consensus 438 ~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l 517 (608)
....+.+...... ..|..+.+.++.|.+.++... ..+... +.+|+.|++++|.++.+|..+. .+|+.|+|
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip~~L~~L~Ls~N~Lt----sLP~~l---~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIPEQITTLILDNNELK----SLPENL---QGNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcccccCCcEEEecCCCCC----cCChhh---ccCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 3455666655444 133333678999999998765 233333 2589999999999999998765 47999999
Q ss_pred cCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCC
Q 039772 518 NIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCG 578 (608)
Q Consensus 518 ~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~ 578 (608)
++|.+..+|.++ . .+|++|++++|++..+|..+. .+|++|++++|. +..+| .+.
T Consensus 249 s~N~L~~LP~~l-~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~--Lt~LP~~lp 303 (754)
T PRK15370 249 SINRITELPERL-P--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS--IRTLPAHLP 303 (754)
T ss_pred cCCccCcCChhH-h--CCCCEEECcCCccCccccccC--CCCcEEECCCCc--cccCcccch
Confidence 999999999988 5 489999999999999998765 589999999976 56677 554
No 26
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=1.4e-06 Score=77.97 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=70.5
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHhCCCCC
Q 039772 129 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFLMPSSR 207 (608)
Q Consensus 129 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l~~~~~ 207 (608)
+|++..++.+...+.... .+.+.|+|.+|+||||+|+++++ .....-..++++..+.. ...........
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------ 70 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLNASDLLEGLVVAELFGH------ 70 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEehhhhhhhhHHHHHhhh------
Confidence 478888899988887643 46788999999999999999999 44322233555554433 11000000000
Q ss_pred cccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--h---HHHHHhhhcCCC---CCCcEEEEEccC
Q 039772 208 LSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--G---VWDVIREILPDN---HNRSRVLITLTQ 267 (608)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~---~~~~l~~~~~~~---~~gs~IivTTR~ 267 (608)
. ............++.+||+||++.. . .+..+....... ..+..||+||..
T Consensus 71 ----~-----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 71 ----F-----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred ----h-----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 0 0011112223456789999999853 2 223323333221 357899999887
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=2.4e-08 Score=95.92 Aligned_cols=122 Identities=20% Similarity=0.132 Sum_probs=57.3
Q ss_pred cceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEE
Q 039772 460 QLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTL 539 (608)
Q Consensus 460 ~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L 539 (608)
.|.++.++++... .+.....-.+.+|+|+++.|.+..+-. +..|.+|..|+|++|.+.++-..= .+|-|..+|
T Consensus 285 ~LtelDLS~N~I~-----~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIKtL 357 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-----QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWH-LKLGNIKTL 357 (490)
T ss_pred hhhhccccccchh-----hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhH-hhhcCEeee
Confidence 4444555444442 233444444555555555555443322 444455555555555444444433 444555555
Q ss_pred eccccccccchhHhcccccCcEEEecCCCCC-CcCCCCCCCCcccceeecc
Q 039772 540 DMPFSYIEHTADEFWKMNKLRHLNFGSITLP-AHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 540 ~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~-~~~lP~i~~L~~L~~l~~~ 589 (608)
.|.+|.++.|. ++++|.+|.+|++++|... +..+.+||+|..|+.+.+.
T Consensus 358 ~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 358 KLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred ehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 55555554443 3555555555555554421 1111155555555554443
No 28
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=3.3e-07 Score=102.49 Aligned_cols=100 Identities=22% Similarity=0.306 Sum_probs=74.8
Q ss_pred ceeEeecCCCcCc-cCCcccCCCCCccEEEecCCCCC-cCChHHHhcCccCcEEeccccccc-cchhHhcccccCcEEEe
Q 039772 488 LLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYIE-HTADEFWKMNKLRHLNF 564 (608)
Q Consensus 488 ~Lr~L~L~~~~l~-~lp~~i~~L~~Lr~L~l~~~~i~-~LP~si~~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l 564 (608)
.+..|+|+++.+. .+|..++.|.+|++|+|++|.+. .+|+++ +.+.+|++|+|++|.+. .+|+.+++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3677888888876 67888888888888888888776 778778 88888888888888665 67888888888888888
Q ss_pred cCCCCCCcCCC-CCCC-Ccccceeecc
Q 039772 565 GSITLPAHPGK-YCGS-LENLNFISAL 589 (608)
Q Consensus 565 ~~~~~~~~~lP-~i~~-L~~L~~l~~~ 589 (608)
++|.... .+| .++. +..+..+++.
T Consensus 498 s~N~l~g-~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 498 NGNSLSG-RVPAALGGRLLHRASFNFT 523 (623)
T ss_pred cCCcccc-cCChHHhhccccCceEEec
Confidence 8866433 377 6665 3345555555
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.47 E-value=2.6e-06 Score=85.39 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=69.0
Q ss_pred CCceechhhHHHHHHHHhcC-CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHhC
Q 039772 126 RDTVGLDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFLM 203 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l~ 203 (608)
..++.-. ..+++...+... .....++.|+|++|+||||+++.+++.... ..+ ..+|+..... ..+++..|+..++
T Consensus 20 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~~~~~~~~~~l~~i~~~lG 96 (269)
T TIGR03015 20 DFFYPSK-GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLVNTRVDAEDLLRMVAADFG 96 (269)
T ss_pred HHhCCCH-HHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeeeCCCCCHHHHHHHHHHHcC
Confidence 3444433 333444444321 223468999999999999999999994221 121 1334443334 7788888888886
Q ss_pred CCCCcccccccCHHHHHHH----HHHHh-CCCcEEEEEcCCCCH--hHHHHHhh
Q 039772 204 PSSRLSEIMDKNYEMKKII----LHEYL-MTKRYLIVIEDVWTI--GVWDVIRE 250 (608)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~----l~~~L-~~kr~LlVLDdv~~~--~~~~~l~~ 250 (608)
.... ..+....... +.... .+++++||+||++.. ..++.+..
T Consensus 97 ~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 97 LETE-----GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred CCCC-----CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 5421 1222222333 33333 678899999999875 45665553
No 30
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.47 E-value=2.2e-07 Score=96.92 Aligned_cols=106 Identities=22% Similarity=0.117 Sum_probs=69.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
.+..++|.+.++... .+-...|.++++|+.+.+..|.++.+|...+...||..|+|.+|.|.++-.+-+.-++.|+
T Consensus 77 p~~t~~LdlsnNkl~----~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLS----HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccccc----cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 667777888777765 4555677788888888888888777777666666677777777666655432225566666
Q ss_pred EEeccccccccchh-HhcccccCcEEEecCC
Q 039772 538 TLDMPFSYIEHTAD-EFWKMNKLRHLNFGSI 567 (608)
Q Consensus 538 ~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~ 567 (608)
+|||+.|.+.++|. ++..=.++++|+|++|
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N 183 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASN 183 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccc
Confidence 66666666665554 3444445555555553
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=1.9e-07 Score=85.98 Aligned_cols=78 Identities=23% Similarity=0.269 Sum_probs=16.7
Q ss_pred ceeEeecCCCcCccCCcccC-CCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHh-cccccCcEEEec
Q 039772 488 LLRVLDLGSLVLIQYPSGIE-NLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEF-WKMNKLRHLNFG 565 (608)
Q Consensus 488 ~Lr~L~L~~~~l~~lp~~i~-~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i-~~L~~L~~L~l~ 565 (608)
.++.|+|+++.++.+. .++ .+.+|+.|++++|.|+.++. + ..|.+|++|++++|.+..+++.+ ..+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-L-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-c-cChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 3455555555544332 233 34455555555555555543 4 45555555555555555554333 234555555555
Q ss_pred CCC
Q 039772 566 SIT 568 (608)
Q Consensus 566 ~~~ 568 (608)
+|.
T Consensus 97 ~N~ 99 (175)
T PF14580_consen 97 NNK 99 (175)
T ss_dssp TS-
T ss_pred CCc
Confidence 544
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.45 E-value=4.1e-07 Score=102.04 Aligned_cols=42 Identities=26% Similarity=0.170 Sum_probs=23.5
Q ss_pred ccceeEeecCCCcCccCCccc---CCC--------------CCccEEEecCCCCCcCCh
Q 039772 486 FKLLRVLDLGSLVLIQYPSGI---ENL--------------FLLRYLKLNIPSLKSLPS 527 (608)
Q Consensus 486 ~~~Lr~L~L~~~~l~~lp~~i---~~L--------------~~Lr~L~l~~~~i~~LP~ 527 (608)
+++|+.|++++|.+..+|... ..| .+|++|+|++|+++.+|.
T Consensus 301 p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 301 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC
Confidence 356777777777766554311 111 245666666666665554
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.45 E-value=8.8e-09 Score=106.96 Aligned_cols=123 Identities=21% Similarity=0.182 Sum_probs=95.7
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
+..|..+++..+... .++..++.++ |++|-+++|.++.+|..++.+.+|..|+.+.|.+..+|+.+ +.|.+|+
T Consensus 120 L~~lt~l~ls~NqlS-----~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql-~~l~slr 192 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLS-----HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQL-GYLTSLR 192 (722)
T ss_pred hhHHHHhhhccchhh-----cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHh-hhHHHHH
Confidence 455555666655553 3444444444 78888888888888888888888888888888888888888 8888888
Q ss_pred EEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeeccC
Q 039772 538 TLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISALH 590 (608)
Q Consensus 538 ~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~~ 590 (608)
.|.++.|.+..+|+.+..| .|..|++++|. +..+| .|.+|.+|+.+-+.+
T Consensus 193 ~l~vrRn~l~~lp~El~~L-pLi~lDfScNk--is~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 193 DLNVRRNHLEDLPEELCSL-PLIRLDFSCNK--ISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHHhhhhhhhCCHHHhCC-ceeeeecccCc--eeecchhhhhhhhheeeeecc
Confidence 8888888888888888744 57788888766 77789 888888888888874
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.45 E-value=1.2e-07 Score=71.46 Aligned_cols=57 Identities=30% Similarity=0.389 Sum_probs=39.1
Q ss_pred CccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCC
Q 039772 511 LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSI 567 (608)
Q Consensus 511 ~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~ 567 (608)
+|++|++++|.+..+|+..|..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 56677777777777766554667777777777777666665 5677777777777664
No 35
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.45 E-value=5.8e-07 Score=84.48 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=34.3
Q ss_pred CceechhhHHHHHHHHhc-CCCCceEEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 127 DTVGLDDRMEELLDLLIE-GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
.||||+++++++...|.. .....+.+.|+|.+|+|||+|.++++. ++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 489999999999999942 234578999999999999999999998 55554
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=1.9e-07 Score=70.42 Aligned_cols=60 Identities=35% Similarity=0.415 Sum_probs=52.7
Q ss_pred cceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEecccccc
Q 039772 487 KLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYI 546 (608)
Q Consensus 487 ~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l 546 (608)
++|+.|++++|.+..+| ..+..+++|++|++++|.+..+|+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46889999999999888 4778899999999999999999876669999999999999864
No 37
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.40 E-value=4.2e-07 Score=88.98 Aligned_cols=93 Identities=12% Similarity=-0.052 Sum_probs=59.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc----hHHHHHHHHHHhCCCCC-ccccc-ccCHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY----ADQILDIVIKFLMPSSR-LSEIM-DKNYEMKKII 222 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~----~~~l~~~il~~l~~~~~-~~~~~-~~~~~~~~~~ 222 (608)
-..++|+|.+|+|||||++.+|++.... +|+.++|+++++. +.++++.+...+-.... .+... ..-.....+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999954333 8999999996555 88888888333222111 00001 1111122222
Q ss_pred HHHH-hCCCcEEEEEcCCCCH
Q 039772 223 LHEY-LMTKRYLIVIEDVWTI 242 (608)
Q Consensus 223 l~~~-L~~kr~LlVLDdv~~~ 242 (608)
...+ -.++++++++|++...
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 3222 2579999999999543
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.38 E-value=2.6e-07 Score=103.57 Aligned_cols=131 Identities=17% Similarity=-0.038 Sum_probs=67.8
Q ss_pred cceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLK 516 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~ 516 (608)
..++.|.+..+... ..+....+|+.|.+.+|.... +|.. ..+|+.|++++|.+..+|... .+|+.|+
T Consensus 322 ~~L~~L~Ls~N~L~--~LP~lp~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~L~Ls~N~L~~LP~l~---~~L~~Ld 388 (788)
T PRK15387 322 SELCKLWAYNNQLT--SLPTLPSGLQELSVSDNQLAS-----LPTL---PSELYKLWAYNNRLTSLPALP---SGLKELI 388 (788)
T ss_pred ccccccccccCccc--cccccccccceEecCCCccCC-----CCCC---CcccceehhhccccccCcccc---cccceEE
Confidence 34555555544433 111123466677776665431 1111 234444555555555444322 3456666
Q ss_pred ecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 517 LNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 517 l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
+++|.+..+|... .+|+.|++++|.+..+|... .+|+.|++++|. +..+| .+++|..|+.++++
T Consensus 389 Ls~N~Lt~LP~l~----s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~Nq--Lt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 389 VSGNRLTSLPVLP----SELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQ--LTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred ecCCcccCCCCcc----cCCCEEEccCCcCCCCCcch---hhhhhhhhccCc--ccccChHHhhccCCCeEECC
Confidence 6666666666433 34556666666666666432 345556666655 44566 66666666666665
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.37 E-value=5.6e-08 Score=101.15 Aligned_cols=141 Identities=22% Similarity=0.265 Sum_probs=109.8
Q ss_pred eEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEe
Q 039772 439 VKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKL 517 (608)
Q Consensus 439 ~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l 517 (608)
...+.+..+.... .+..+ .--|+.|.+.++... .++..++....|..||.+.|.+..+|+.++.|..||.|++
T Consensus 123 lt~l~ls~NqlS~-lp~~lC~lpLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 123 LTFLDLSSNQLSH-LPDGLCDLPLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred HHHhhhccchhhc-CChhhhcCcceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 3444444444441 22222 556888999888875 4556667888899999999999999999999999999999
Q ss_pred cCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCC---Ccccceeecc
Q 039772 518 NIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGS---LENLNFISAL 589 (608)
Q Consensus 518 ~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~---L~~L~~l~~~ 589 (608)
+.|.+..+|+.. +.| .|..||++.|++..||-.|.+|+.|++|-|.+|- +.+-| .|+- ..-.++|+..
T Consensus 197 rRn~l~~lp~El-~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP--LqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 197 RRNHLEDLPEEL-CSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP--LQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred hhhhhhhCCHHH-hCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC--CCCChHHHHhccceeeeeeecch
Confidence 999999999999 865 5899999999999999999999999999999865 77777 5543 5566666654
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=9.4e-07 Score=98.83 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=90.1
Q ss_pred cceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-cCCcccCCCCCccEEEecCCCCC-cCChHHHhcCccCc
Q 039772 460 QLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPSSLLSNLLNLY 537 (608)
Q Consensus 460 ~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~~Lr~L~l~~~~i~-~LP~si~~~L~~L~ 537 (608)
.++.|.+.++... ..++..+..+++|+.|+|++|.+. .+|+.++.+.+|++|+|++|++. .+|+++ ++|.+|+
T Consensus 419 ~v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLR 493 (623)
T ss_pred EEEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCC
Confidence 3677888777665 566778999999999999999987 89999999999999999999997 899999 9999999
Q ss_pred EEeccccccc-cchhHhccc-ccCcEEEecCCC
Q 039772 538 TLDMPFSYIE-HTADEFWKM-NKLRHLNFGSIT 568 (608)
Q Consensus 538 ~L~L~~~~l~-~lP~~i~~L-~~L~~L~l~~~~ 568 (608)
+|+|++|.+. .+|..++.+ .++..+++.+|.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999665 899988874 477888888853
No 41
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.35 E-value=1.6e-06 Score=84.56 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=42.7
Q ss_pred ceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc
Q 039772 128 TVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY 190 (608)
Q Consensus 128 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 190 (608)
|+||+.++++|.+++..+. .+.+.|+|+.|+|||+|++++.+ .....-...+|+...+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~ 59 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEE 59 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTB
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccc
Confidence 7999999999999998764 57899999999999999999999 55433224555554333
No 42
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=1.4e-06 Score=76.60 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHh
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 227 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 227 (608)
-+++.|.|+-|+||||++++++.+ .. ....++|++.... ...... .+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~yi~~~~~~~~~~~~-------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILYINFDDPRDRRLAD-------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--hc-ccccceeeccCCHHHHHHhh-------------------hh-hHHHHHHhh
Confidence 368999999999999999999983 22 3344667765544 111000 00 223334444
Q ss_pred CCCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 228 MTKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 228 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
..++.+|+||++....+|......+.+..+..+|++|+.+
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccc
Confidence 4478899999999888888887777766677899999998
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=5.3e-07 Score=95.78 Aligned_cols=122 Identities=21% Similarity=0.187 Sum_probs=70.7
Q ss_pred cceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEE
Q 039772 460 QLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTL 539 (608)
Q Consensus 460 ~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L 539 (608)
+|+.|.+.++... ..+.....++.|+.|++++|.+..+|...+.+..|+.|+++++.+..+|..+ +.+.+|++|
T Consensus 141 nL~~L~l~~N~i~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEEL 214 (394)
T ss_pred hcccccccccchh-----hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh-hhhhhhhhh
Confidence 5666666665543 2223456666666666666666666665556666666666666666666655 555556666
Q ss_pred eccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 540 DMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 540 ~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
.+++|.+...|..+.++.++..|.+.+|. +..+| .++.+..|+.+++.
T Consensus 215 ~~~~N~~~~~~~~~~~~~~l~~l~l~~n~--~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 215 DLSNNSIIELLSSLSNLKNLSGLELSNNK--LEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhcCCcceecchhhhhcccccccccCCce--eeeccchhccccccceeccc
Confidence 66666555555555555555555544433 33335 55555555556555
No 44
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.28 E-value=9.5e-07 Score=90.22 Aligned_cols=92 Identities=15% Similarity=0.020 Sum_probs=58.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc----hHHHHHHHHHHhCCCCC-c-ccccccCHHHHHHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY----ADQILDIVIKFLMPSSR-L-SEIMDKNYEMKKIIL 223 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~----~~~l~~~il~~l~~~~~-~-~~~~~~~~~~~~~~l 223 (608)
+..+|+|++|+||||||++||++.... +|+.++|+.+++. +.++++.|...+-.+.. . +...........+.-
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 568899999999999999999953333 8999999998877 66777777632222111 0 000000111112222
Q ss_pred HHH-hCCCcEEEEEcCCCCH
Q 039772 224 HEY-LMTKRYLIVIEDVWTI 242 (608)
Q Consensus 224 ~~~-L~~kr~LlVLDdv~~~ 242 (608)
... -.+++++|++|++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHcCCCEEEEEEChHHH
Confidence 222 3679999999999543
No 45
>PTZ00202 tuzin; Provisional
Probab=98.25 E-value=1.2e-05 Score=82.63 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=61.7
Q ss_pred CCCCCCCCceechhhHHHHHHHHhcCC-CCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHH
Q 039772 120 SSSSKSRDTVGLDDRMEELLDLLIEGP-PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIV 198 (608)
Q Consensus 120 ~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~i 198 (608)
+.+.+...|+||+.+...+...|...+ ...+++.|.|++|+|||||++.+.. ... +. .++++.. ...+++..|
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~--~l~--~~-qL~vNpr-g~eElLr~L 329 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVR--KEG--MP-AVFVDVR-GTEDTLRSV 329 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHh--cCC--ce-EEEECCC-CHHHHHHHH
Confidence 345567899999999999999997543 3456999999999999999999998 333 22 3333333 578999999
Q ss_pred HHHhCC
Q 039772 199 IKFLMP 204 (608)
Q Consensus 199 l~~l~~ 204 (608)
+.+|+.
T Consensus 330 L~ALGV 335 (550)
T PTZ00202 330 VKALGV 335 (550)
T ss_pred HHHcCC
Confidence 999996
No 46
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.24 E-value=6.9e-07 Score=91.84 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=42.0
Q ss_pred ccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-----cCCcccCCCCCccEEEecCCCCC-----cCChH
Q 039772 459 SQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK-----SLPSS 528 (608)
Q Consensus 459 ~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~i~-----~LP~s 528 (608)
++|+.|.+.++.............+..++.|+.|++++|.+. .++..+..+.+|++|++++|.+. .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 455566555554431000112233444455666666665544 23333444455666666655543 23333
Q ss_pred HHhcCccCcEEeccccccc
Q 039772 529 LLSNLLNLYTLDMPFSYIE 547 (608)
Q Consensus 529 i~~~L~~L~~L~L~~~~l~ 547 (608)
+ ..+++|++|++++|.+.
T Consensus 217 ~-~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 L-ASLKSLEVLNLGDNNLT 234 (319)
T ss_pred h-cccCCCCEEecCCCcCc
Confidence 4 45555666666665443
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.20 E-value=8.1e-07 Score=94.36 Aligned_cols=141 Identities=28% Similarity=0.301 Sum_probs=106.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhcccc-ceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFK-LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~-~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
.+.+..|.+.++... .+++....+. +|+.|+++++.+..+|..++.+++|+.|++++|++..+|... +.+.+|
T Consensus 115 ~~~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L 188 (394)
T COG4886 115 LTNLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNL 188 (394)
T ss_pred ccceeEEecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhh
Confidence 456788888777764 3445555664 899999999999988888899999999999999999999877 788999
Q ss_pred cEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeeccCCC-cc-cchhcCCCCCCCC
Q 039772 537 YTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISALHPC-CC-TEDLLGRLPNLQN 607 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~~~~-~~-~~~~l~~L~~L~~ 607 (608)
+.|++++|.+..+|..++.+..|..|.+++|. ....| .+.++..+..+.+.++. .. +.. ++.+++|+.
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~--~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~ 259 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNS--IIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLET 259 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCc--ceecchhhhhcccccccccCCceeeeccch-hccccccce
Confidence 99999999999999888888889999998863 34466 77777777777665221 11 233 555555544
No 48
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.19 E-value=2.2e-05 Score=87.25 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=87.3
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee---eeeeeEecccc-----hHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF---DCHAWIPDISY-----ADQ 193 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~-----~~~ 193 (608)
+...++++|.+..+..+.+.+.... ...+.|+|.+|+||||+|+.+++.......+ ...-|+.+... ...
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 3455689999999999888875443 5679999999999999999998853322332 12334443321 112
Q ss_pred HHHHH---------------HHHhCCCCC--------------cccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--
Q 039772 194 ILDIV---------------IKFLMPSSR--------------LSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI-- 242 (608)
Q Consensus 194 l~~~i---------------l~~l~~~~~--------------~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-- 242 (608)
+...+ +...+.... ..+....+ ...+..+.+.+.+++++++.|+.|..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 21111 111111000 00012222 23567888889999999998877754
Q ss_pred hHHHHHhhhcCCCCCCcEEEE--EccC
Q 039772 243 GVWDVIREILPDNHNRSRVLI--TLTQ 267 (608)
Q Consensus 243 ~~~~~l~~~~~~~~~gs~Iiv--TTR~ 267 (608)
..|+.++..+....+...|+| ||++
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~ 333 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRD 333 (615)
T ss_pred ccchhhhhhcccCccceEEEEEecccc
Confidence 468888777766666665666 5665
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.16 E-value=2.4e-05 Score=79.96 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=40.9
Q ss_pred CCceechhhHHHHHHHHhcC---CCCceEEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 126 RDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
.+|||+++.++++..++... ......+.++|++|+|||+||+++++ +....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~ 57 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVN 57 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCC
Confidence 57999999999999888642 22355688999999999999999999 44433
No 50
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.15 E-value=2.2e-05 Score=87.00 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=78.3
Q ss_pred CCCCCceechhhHHHHHHHHhcC---CCCceEEEEEcCCCcchHHHHHHHhcCccccc-----eeee--eeeEecccc--
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFATEAYNSSYVKH-----YFDC--HAWIPDISY-- 190 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----~F~~--~~wv~vs~~-- 190 (608)
..+..+.||++++++|..+|... .....++-|+|++|.|||+.++.|.+ ++.. ..+. +++|....-
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLr--ELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQ--LLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHH--HHHHHHhhccCCCceEEEEeCCccCC
Confidence 44678999999999999998652 22346788999999999999999987 3321 2222 455654433
Q ss_pred hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC---CCcEEEEEcCCCCH
Q 039772 191 ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM---TKRYLIVIEDVWTI 242 (608)
Q Consensus 191 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVLDdv~~~ 242 (608)
...+...|..++....+ ....+.......+...+. +...+||||+++..
T Consensus 830 p~sIYqvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 77888888888865433 233444455555555552 23458999999754
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.14 E-value=6e-07 Score=86.55 Aligned_cols=121 Identities=19% Similarity=0.188 Sum_probs=87.9
Q ss_pred eEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEE
Q 039772 439 VKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLK 516 (608)
Q Consensus 439 ~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~ 516 (608)
+..+.++.+.+.. +.+.. .|++|.|.++.+... .. ..+..+.+|..|||++|.+.++-..-..|-+.+.|+
T Consensus 286 LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-----~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 286 LTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-----TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhccccccchhh-hhhhhhhccceeEEecccccee-----ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 4444455544442 22222 788888888888764 22 237778888889999888776655555677788888
Q ss_pred ecCCCCCcCChHHHhcCccCcEEeccccccccchh--HhcccccCcEEEecCCC
Q 039772 517 LNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD--EFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 517 l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~~~ 568 (608)
|++|.|..|.. + ++|++|..||+++|+++.+-+ +||+|++|.+|.+.+|.
T Consensus 359 La~N~iE~LSG-L-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETLSG-L-RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhhh-h-HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 88888887754 7 888899999999888887755 78899999888888855
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=3.1e-06 Score=58.81 Aligned_cols=40 Identities=35% Similarity=0.401 Sum_probs=26.8
Q ss_pred CccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh
Q 039772 511 LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD 551 (608)
Q Consensus 511 ~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~ 551 (608)
+|++|++++|+|+.+|+.+ ++|++|++|++++|.+..+|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCcC
Confidence 5677777777777777767 777777777777776666553
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.09 E-value=4.2e-05 Score=78.99 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=43.2
Q ss_pred CCCCCCceechhhHHHHHHHHhc---CCCCceEEEEEcCCCcchHHHHHHHhcCccccc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIE---GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH 177 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~ 177 (608)
+....+|+|++..++.+..++.. .......+.|+|++|+||||+|+++++ ....
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~ 77 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGV 77 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCC
Confidence 34567899999999999888864 233456788999999999999999999 4443
No 54
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.06 E-value=1.6e-05 Score=84.63 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=39.8
Q ss_pred CCCCceechhhHHH---HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 124 KSRDTVGLDDRMEE---LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 124 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
...++||.+..+.. +.+++.... ...+.++|++|+||||+|+.+++ .....|
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~--~~~~~~ 64 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAG--ATDAPF 64 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 44578898887666 777776554 56788899999999999999998 444444
No 55
>PRK06893 DNA replication initiation factor; Validated
Probab=98.04 E-value=1e-05 Score=78.86 Aligned_cols=37 Identities=14% Similarity=0.018 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEec
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPD 187 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 187 (608)
.+.+.++|.+|+|||+||+++++ ........+.|++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeH
Confidence 46789999999999999999999 55444445667764
No 56
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=6.5e-05 Score=77.94 Aligned_cols=115 Identities=14% Similarity=0.134 Sum_probs=86.5
Q ss_pred CCCCCCceechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhcCccccceeee--eeeEecccc--hHHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC--HAWIPDISY--ADQIL 195 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~--~~~l~ 195 (608)
...+..+.+|+++++++...|..- +....-+.|+|..|.|||+.++.+.. ++...... .++|..-.. ..++.
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHH
Confidence 344556999999999999988652 22233388999999999999999999 66665433 567765444 89999
Q ss_pred HHHHHHhCCCCCcccccccCHHHHHHHHHHHhC--CCcEEEEEcCCCCH
Q 039772 196 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIEDVWTI 242 (608)
Q Consensus 196 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~ 242 (608)
.+|+.+++... ....+..+....+.+.+. ++.++||||+++..
T Consensus 91 ~~i~~~~~~~p----~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 91 SKILNKLGKVP----LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHHHHHcCCCC----CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 99999987321 245666777778888775 48899999999765
No 57
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.03 E-value=9.2e-06 Score=83.54 Aligned_cols=91 Identities=11% Similarity=-0.006 Sum_probs=59.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccc-eeeeeeeEecccc----hHHHHHHHHHHhCCCCCc-ccccccC-HHHHHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKH-YFDCHAWIPDISY----ADQILDIVIKFLMPSSRL-SEIMDKN-YEMKKII 222 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~----~~~l~~~il~~l~~~~~~-~~~~~~~-~~~~~~~ 222 (608)
..++|+|.+|.|||||++.+++ .+.. +|+..+|+.+++. +.++++.++..+-..... +...... .....+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~--~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQ--AITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHH--hhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 5789999999999999999999 4433 6999999998744 888888885544332210 0000001 1122222
Q ss_pred HHHH-hCCCcEEEEEcCCCCH
Q 039772 223 LHEY-LMTKRYLIVIEDVWTI 242 (608)
Q Consensus 223 l~~~-L~~kr~LlVLDdv~~~ 242 (608)
.... -.+++++|++|.+...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 3689999999999543
No 58
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.01 E-value=4.9e-06 Score=85.46 Aligned_cols=153 Identities=18% Similarity=0.041 Sum_probs=106.6
Q ss_pred CcceEEEEEecccccccccccc--ccc---ceEEeecCCCCCCCCCcchHHhhccc-cceeEeecCCCcCc-----cCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQ---LHSLLCCSPESRHFDPMDWEKICGMF-KLLRVLDLGSLVLI-----QYPS 504 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~---LrsL~l~~~~~~~~~~~~~~~~~~~~-~~Lr~L~L~~~~l~-----~lp~ 504 (608)
..+++++.+..+.......... +.+ |+.|.+.++.........+...+..+ ++|+.|++++|.+. .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 3478888888776643222222 344 99999998865411001233455666 89999999999976 4556
Q ss_pred ccCCCCCccEEEecCCCCC-----cCChHHHhcCccCcEEeccccccc-----cchhHhcccccCcEEEecCCCCCCcCC
Q 039772 505 GIENLFLLRYLKLNIPSLK-----SLPSSLLSNLLNLYTLDMPFSYIE-----HTADEFWKMNKLRHLNFGSITLPAHPG 574 (608)
Q Consensus 505 ~i~~L~~Lr~L~l~~~~i~-----~LP~si~~~L~~L~~L~L~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~~~~~l 574 (608)
.+..+.+|++|++++|.+. .++..+ ..+++|+.|++++|.+. .++..+.++++|++|++++|...-..+
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 6777889999999999886 355556 67789999999999764 456678889999999999965332111
Q ss_pred CCCCC-----Ccccceeecc
Q 039772 575 KYCGS-----LENLNFISAL 589 (608)
Q Consensus 575 P~i~~-----L~~L~~l~~~ 589 (608)
..+.. ...|+.++++
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 239 AALASALLSPNISLLTLSLS 258 (319)
T ss_pred HHHHHHHhccCCCceEEEcc
Confidence 12222 3688888887
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.97 E-value=4.1e-05 Score=79.43 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=39.8
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....+++|++..++.+..++..+. .+.+.++|..|+||||+|+++.+
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 344678999999999999887654 45678999999999999999988
No 60
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.96 E-value=1.3e-06 Score=87.49 Aligned_cols=131 Identities=15% Similarity=0.055 Sum_probs=109.2
Q ss_pred ccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCCccEEEecC-CCCCcCChHHH
Q 039772 453 YLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNI-PSLKSLPSSLL 530 (608)
Q Consensus 453 ~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~~-~~i~~LP~si~ 530 (608)
+|..+.+....+.+..+... .+++..|+.+++||.|||+.|.|+.+ |+.+..|..|-.|-+-+ |.|+.||...|
T Consensus 61 VP~~LP~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcccCCCcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 44444667778888888876 68889999999999999999999854 78888888887777666 89999999999
Q ss_pred hcCccCcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 531 SNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 531 ~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
++|..||.|.+.-|.+..++. .+..|++|+.|.+.+|. ...++ .+..|..++.+.+.
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~--~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK--IQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh--hhhhccccccchhccchHhhh
Confidence 999999999999998887665 89999999999999976 55566 56668888887776
No 61
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=1.5e-05 Score=86.24 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=79.5
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHH
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKF 201 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~ 201 (608)
....+++|-+...+.+..++..+. -...+.++|++|+||||+|+.+++.-...+.++..+|.|.+.. +......-...
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 344678999988888888887764 2356799999999999999999884222223334555554322 11100000001
Q ss_pred hCCCCCcccccccCHHHHHHHHHHHh-----CCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 202 LMPSSRLSEIMDKNYEMKKIILHEYL-----MTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 202 l~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
+... .....+... .+.+.+ .+++-++|+|+++.. ..++.|...+....+.+.+|++|..
T Consensus 90 l~~~------~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 90 IDAA------SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred eccc------ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 1110 111122221 222222 346678999999855 5677787777665556666666655
No 62
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.88 E-value=5.2e-06 Score=84.36 Aligned_cols=249 Identities=15% Similarity=0.120 Sum_probs=153.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeee-eeeEecccc--hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC-HAWIPDISY--ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 224 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~--~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 224 (608)
..+.+.++|.|||||||++-.+.. +...|+. +.++...+. ...+.-.....++... -+-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-------~~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-------QPGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccc-------ccchHHHHHHH
Confidence 368899999999999999998888 6677755 666665544 4444444455455422 12234556677
Q ss_pred HHhCCCcEEEEEcCCCCH-hHHHHHhhhcCCCCCCcEEEEEccCchhhhccc----------c-----------------
Q 039772 225 EYLMTKRYLIVIEDVWTI-GVWDVIREILPDNHNRSRVLITLTQIEMVTSFK----------L----------------- 276 (608)
Q Consensus 225 ~~L~~kr~LlVLDdv~~~-~~~~~l~~~~~~~~~gs~IivTTR~~~~v~~~e----------~----------------- 276 (608)
.+..++|.++|+||..+. ++-..+...+..+.+.-.|+.|+|+ ......| +
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre-~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSRE-AILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHh-hhcccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 888889999999999655 3444445555556667789999998 3333321 1
Q ss_pred --------ccccchh-------hHHhhhcCcC-CCC----h----hhHhhHHHHhhcccccccCCCCCCHHHHHhhcccC
Q 039772 277 --------EDGENIG-------LDLVLTGGPL-RAT----Y----NGWTFLILYHGNISLEENIGKAVGIPLVLRHFKYC 332 (608)
Q Consensus 277 --------~~l~~i~-------Lal~~~g~~L-~~~----~----~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~~Sy~ 332 (608)
+...+|| ++|...++.. .-. . +.|.. .-+. ..... .......+.+ .+||.
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~l---l~~~-~r~a~-~~~qtl~asl-~ws~~ 235 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRL---LTGG-ARLAV-LRQQTLRASL-DWSYA 235 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHH---Hhcc-cccch-hHHHhccchh-hhhhH
Confidence 1111222 4444443333 100 1 11211 1111 10000 3445678889 99999
Q ss_pred CCCcchHHHHhHhhhccCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCccccccCCCCceeEEEcChhHHH
Q 039772 333 SLPFCLKLCFLYLSVFAAHLEISTRQLYQLWIAEGFIPNNSEATAESYLEQLIKEGFVEAKKRKAGGTINTCSIPGHWRP 412 (608)
Q Consensus 333 ~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~g~~~~~~mHdlv~~ 412 (608)
-|....+-.|..++.|...|... -..|.+.|-......-.....+-.+++++++....... ...|+.-+-.|.
T Consensus 236 lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~---~a~~Rl~eT~r~ 308 (414)
T COG3903 236 LLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLG---RARYRLLETGRR 308 (414)
T ss_pred hhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhh---HHHHHHHHHHHH
Confidence 99999999999999998886654 23455544432112333555677889999987765321 245777777888
Q ss_pred HHHHhhcc
Q 039772 413 VLLTVHYM 420 (608)
Q Consensus 413 ~a~~~~~~ 420 (608)
|+..+..+
T Consensus 309 YalaeL~r 316 (414)
T COG3903 309 YALAELHR 316 (414)
T ss_pred HHHHHHHh
Confidence 87766544
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=97.88 E-value=5.6e-05 Score=82.20 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=74.5
Q ss_pred CCCCCCceechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIV 198 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~i 198 (608)
+....+++|.+..++.+.+++..- ....+.+.|+|++|+||||+|+++++ ++. |+ .+-++.+.. .......+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~--el~--~~-~ielnasd~r~~~~i~~~ 84 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAN--DYG--WE-VIELNASDQRTADVIERV 84 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HcC--CC-EEEEcccccccHHHHHHH
Confidence 444567999999999999998653 22267899999999999999999999 442 22 223344433 22233333
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH------hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 199 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI------GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 199 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
+.......+ ....++.+||+|+++.. ..+..+...+.. .+..||+|+.+
T Consensus 85 i~~~~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~ 139 (482)
T PRK04195 85 AGEAATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAND 139 (482)
T ss_pred HHHhhccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccC
Confidence 333221111 01136789999999764 224555554442 24557777755
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.4e-05 Score=55.57 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=36.2
Q ss_pred cceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCCh
Q 039772 487 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPS 527 (608)
Q Consensus 487 ~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~ 527 (608)
++|++|++++|.++.+|+.+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47899999999999999989999999999999999998875
No 65
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.83 E-value=4.3e-05 Score=80.07 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=42.5
Q ss_pred CCCCCceechhhHHHHHHHHhcC--C---------CCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEG--P---------PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~--~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
....++.|+++.++++.+.+... . ...+-+.++|++|+|||++|+++++ +....|
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 34567999999999999887532 1 1245588999999999999999999 555444
No 66
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.82 E-value=4.8e-05 Score=74.06 Aligned_cols=106 Identities=15% Similarity=0.109 Sum_probs=61.6
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCccc
Q 039772 131 LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSE 210 (608)
Q Consensus 131 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~ 210 (608)
.+..++.+.+++... ....+.|+|..|+|||+||+++++ .........+|++++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~~~~~----~~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPLAELA----QAD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeHHHHH----HhH------------
Confidence 445667777765433 356888999999999999999998 443333345566543210 000
Q ss_pred ccccCHHHHHHHHHHHhCCCcEEEEEcCCCCHh---H-HHHHhhhcCC-CCCCcEEEEEccC
Q 039772 211 IMDKNYEMKKIILHEYLMTKRYLIVIEDVWTIG---V-WDVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 211 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
..+...+.+ .-+||+||++... . .+.+...+.. ...+.++|+||+.
T Consensus 82 ----------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 82 ----------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred ----------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 011112222 2389999997652 2 2344443332 1234578898887
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=97.81 E-value=0.00011 Score=75.47 Aligned_cols=125 Identities=13% Similarity=0.160 Sum_probs=71.5
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccc-ceeee-eeeEecccc-hHHHHHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVK-HYFDC-HAWIPDISY-ADQILDIV 198 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~-~~wv~vs~~-~~~l~~~i 198 (608)
|..-.+++|.++.++.+..++..+. .+-+-++|++|+||||+|+.+++ .+. ..|.. ++-+..+.. -....+.+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~~vr~~ 84 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGIDVVRNK 84 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHHHHHHH
Confidence 3445678998888888888776554 44577999999999999999988 432 22321 222222222 11122222
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 199 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 199 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
++.+..... . .-.++.-++|+|+++.. ...+.+...+....+.+++|++|..
T Consensus 85 i~~~~~~~~----~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 85 IKMFAQKKV----T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HHHHHhccc----c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 222211000 0 00135678999999755 3444555444444456778777755
No 68
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.78 E-value=0.00015 Score=74.58 Aligned_cols=122 Identities=11% Similarity=0.110 Sum_probs=72.5
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc-eeeeeeeEec--ccc-hHHHHHHH
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH-YFDCHAWIPD--ISY-ADQILDIV 198 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~v--s~~-~~~l~~~i 198 (608)
..-.+++|+++.++.+..++..+. .+.+.++|..|.||||+|+.+++ .... .+. ..++.+ +.. -.......
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~--~l~~~~~~-~~~i~~~~~~~~~~~~~~~~ 88 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAR--ELYGEDWR-ENFLELNASDERGIDVIRNK 88 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHcCCccc-cceEEeccccccchHHHHHH
Confidence 344678999999999999987654 45579999999999999999988 4322 121 122222 222 11111111
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 199 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 199 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
+..+....+ .-...+-+|++|++... +....+...+....+.+++|+++..
T Consensus 89 i~~~~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 89 IKEFARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred HHHHHhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 111111000 00123568999998654 4455666666555556778887755
No 69
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.77 E-value=0.00017 Score=74.09 Aligned_cols=121 Identities=14% Similarity=0.130 Sum_probs=72.9
Q ss_pred CCCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHH
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVI 199 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il 199 (608)
.|....+++|.++..+.+..++..+. -..++.++|.+|+||||+|+++++ ..... ...++.+.. ...+...+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~--~~~~~---~~~i~~~~~~~~~i~~~l- 88 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCN--EVGAE---VLFVNGSDCRIDFVRNRL- 88 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCcc---ceEeccCcccHHHHHHHH-
Confidence 34455789999999999999987643 346777799999999999999998 43322 223332211 11111111
Q ss_pred HHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH---hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 200 KFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI---GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
..+.... .+.+.+-+||+||+... +..+.+...+.....++++|+||..
T Consensus 89 ~~~~~~~-------------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~ 140 (316)
T PHA02544 89 TRFASTV-------------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANN 140 (316)
T ss_pred HHHHHhh-------------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 0000000 01134557889999754 2334444444444567889999877
No 70
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00024 Score=74.27 Aligned_cols=138 Identities=13% Similarity=0.108 Sum_probs=74.8
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeee-eeeEecccchHHHHHHHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC-HAWIPDISYADQILDIVIK 200 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~l~~~il~ 200 (608)
|....+++|-+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.-........ -+..|. .-.++..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~------~c~~~~~ 84 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI------ICKEIEK 84 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH------HHHHHhc
Confidence 3445689999999999999887653 3456789999999999999999883111111100 000000 0000000
Q ss_pred HhCCCCC-cccccccCHHHHHHHHHHHh-----CCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 201 FLMPSSR-LSEIMDKNYEMKKIILHEYL-----MTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 201 ~l~~~~~-~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.....-. .........++.. .+.+.+ .+++-++|+|++... ..++.+...+....+..++|++|.+
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred CCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 0000000 0000001122211 222221 235568999999765 3577777776665567788888766
No 71
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.9e-05 Score=88.40 Aligned_cols=106 Identities=25% Similarity=0.296 Sum_probs=63.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCC--hHHHhcCcc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLP--SSLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP--~si~~~L~~ 535 (608)
+|.|++|.+.+-.... ......+.+|++|+.||++++.++.+ .++++|++|+.|.+++-.+..-+ ..+ .+|++
T Consensus 147 LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKK 221 (699)
T ss_pred CcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hcccC
Confidence 7777777777655432 22345566777777777777777666 56777777777777665444322 235 56777
Q ss_pred CcEEeccccccccchh-------HhcccccCcEEEecCCC
Q 039772 536 LYTLDMPFSYIEHTAD-------EFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 536 L~~L~L~~~~l~~lP~-------~i~~L~~L~~L~l~~~~ 568 (608)
|++||+|......-|. .-..|++||.|+.+++.
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7777776652222221 11236677777777643
No 72
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00032 Score=71.92 Aligned_cols=121 Identities=14% Similarity=0.194 Sum_probs=77.4
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC----ccccceeeeeeeEec-ccc--hHHHHHHH
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS----SYVKHYFDCHAWIPD-ISY--ADQILDIV 198 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wv~v-s~~--~~~l~~~i 198 (608)
.+++|-+..++.+...+..+. -.+...++|+.|+||||+|+.++.. .....|.|...|... +.. +.+ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 468898888899999887653 3457789999999999999988872 112345555455432 211 222 2223
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEc-CCCCHhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 199 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIE-DVWTIGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 199 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD-dv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.+.+.... ...++|++||=| |..+...++.|...+....+++.+|++|.+
T Consensus 82 ~~~~~~~p-------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~ 132 (313)
T PRK05564 82 IEEVNKKP-------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN 132 (313)
T ss_pred HHHHhcCc-------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 33322100 112345544444 445667899999888887789999999987
No 73
>PRK08116 hypothetical protein; Validated
Probab=97.74 E-value=0.0002 Score=71.38 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=58.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT 229 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 229 (608)
.-+.++|..|.|||.||.++++ .+..+-..++|++++ +++..+........ ..+ ...+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~~~----~ll~~i~~~~~~~~------~~~----~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVNFP----QLLNRIKSTYKSSG------KED----ENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH----HHHHHHHHHHhccc------ccc----HHHHHHHhcC
Confidence 3578999999999999999999 555443446666643 34444444433211 111 1223344444
Q ss_pred CcEEEEEcCCCC--HhHHH--HHhhhcCC-CCCCcEEEEEccC
Q 039772 230 KRYLIVIEDVWT--IGVWD--VIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 230 kr~LlVLDdv~~--~~~~~--~l~~~~~~-~~~gs~IivTTR~ 267 (608)
-. ||||||+.. ..+|. .+...+.. ...|..+||||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44 899999942 23332 23333322 1346679999987
No 74
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00016 Score=79.95 Aligned_cols=126 Identities=12% Similarity=0.143 Sum_probs=77.1
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce-------------------eeee
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY-------------------FDCH 182 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 182 (608)
+....++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+.-..... |...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 4455789999999999999987664 2455679999999999999988773211111 1111
Q ss_pred eeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH----hCCCcEEEEEcCCCCH--hHHHHHhhhcCCCC
Q 039772 183 AWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY----LMTKRYLIVIEDVWTI--GVWDVIREILPDNH 256 (608)
Q Consensus 183 ~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~ 256 (608)
++++.+. ....++..+.+... ..++.-++|||++... ..++.|...+-...
T Consensus 91 iEIDAas-----------------------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP 147 (830)
T PRK07003 91 VEMDAAS-----------------------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP 147 (830)
T ss_pred EEecccc-----------------------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC
Confidence 1221110 11122222222211 1245568889999865 45777777666555
Q ss_pred CCcEEEEEccCchhh
Q 039772 257 NRSRVLITLTQIEMV 271 (608)
Q Consensus 257 ~gs~IivTTR~~~~v 271 (608)
+..++|+||.++..+
T Consensus 148 ~~v~FILaTtd~~KI 162 (830)
T PRK07003 148 PHVKFILATTDPQKI 162 (830)
T ss_pred CCeEEEEEECChhhc
Confidence 678888888883333
No 75
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.69 E-value=0.00013 Score=82.02 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=39.1
Q ss_pred CCCCCceechhhHH---HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 123 SKSRDTVGLDDRME---ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 123 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
....+++|.+..+. .+.+.+..+. ...+.++|++|+||||+|+.+++ .....|
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 34467899888775 4555555443 55678999999999999999998 555444
No 76
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.68 E-value=0.00024 Score=62.71 Aligned_cols=87 Identities=9% Similarity=0.087 Sum_probs=49.1
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM 228 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 228 (608)
..+.|+|.+|+||||+|+.++. ........++++..+.. ........ ....... ............+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK----KASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH-hhhhhcc----CCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999 44444334566655444 11111110 1111111 112222333334444444
Q ss_pred CC-cEEEEEcCCCCHh
Q 039772 229 TK-RYLIVIEDVWTIG 243 (608)
Q Consensus 229 ~k-r~LlVLDdv~~~~ 243 (608)
.. ..+|++|+++...
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 44 4999999998763
No 77
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.68 E-value=0.00019 Score=63.02 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEcCCCcchHHHHHHHhcCcccc
Q 039772 152 VAILDSIGLDKTAFATEAYNSSYVK 176 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~~~~~~ 176 (608)
|.|+|.+|+||||+|+.+++ ...
T Consensus 1 ill~G~~G~GKT~l~~~la~--~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ--YLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH--HTT
T ss_pred CEEECcCCCCeeHHHHHHHh--hcc
Confidence 56899999999999999999 444
No 78
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00022 Score=77.96 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce-------------------eeee
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY-------------------FDCH 182 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 182 (608)
+....++||.+...+.+.+++..+. -.+.+.++|+.|+||||+|+.+++.-..... |..+
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 4455789999999999999998664 2467789999999999999999873111110 1111
Q ss_pred eeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH----hCCCcEEEEEcCCCCH--hHHHHHhhhcCCCC
Q 039772 183 AWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY----LMTKRYLIVIEDVWTI--GVWDVIREILPDNH 256 (608)
Q Consensus 183 ~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~ 256 (608)
+.+..+ .....++..+.+... ..+++-++|+|+|... ...+.|...+-...
T Consensus 90 iEIDAA-----------------------s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP 146 (702)
T PRK14960 90 IEIDAA-----------------------SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP 146 (702)
T ss_pred EEeccc-----------------------ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 111111 011222222221111 1356678999999754 56677776666555
Q ss_pred CCcEEEEEccC
Q 039772 257 NRSRVLITLTQ 267 (608)
Q Consensus 257 ~gs~IivTTR~ 267 (608)
.+.++|++|.+
T Consensus 147 ~~v~FILaTtd 157 (702)
T PRK14960 147 EHVKFLFATTD 157 (702)
T ss_pred CCcEEEEEECC
Confidence 56788888877
No 79
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.00012 Score=75.88 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=74.6
Q ss_pred ceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCC-cCccCCcccCCCCCccEEE
Q 039772 438 KVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSL-VLIQYPSGIENLFLLRYLK 516 (608)
Q Consensus 438 ~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~-~l~~lp~~i~~L~~Lr~L~ 516 (608)
..++|.+..+... .++.+.++|++|.+.+|... ..++..+ ..+|+.|++++| .+..+|++ |+.|+
T Consensus 53 ~l~~L~Is~c~L~--sLP~LP~sLtsL~Lsnc~nL----tsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 53 ASGRLYIKDCDIE--SLPVLPNELTEITIENCNNL----TTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred CCCEEEeCCCCCc--ccCCCCCCCcEEEccCCCCc----ccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 4567777776544 33333667899988877654 2223222 247888888888 57777765 44455
Q ss_pred ecCC---CCCcCChHHHhcCc------------------cCcEEeccccccccchhHhcccccCcEEEecCC
Q 039772 517 LNIP---SLKSLPSSLLSNLL------------------NLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSI 567 (608)
Q Consensus 517 l~~~---~i~~LP~si~~~L~------------------~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~ 567 (608)
++++ .+..||+++ ..|. +|++|++++|....+|..+. .+|++|.++.+
T Consensus 119 L~~n~~~~L~~LPssL-k~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNGL-TSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcchH-hheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 5553 467888887 7663 68889998886656665543 58888888764
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00027 Score=77.09 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=40.6
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....++||-+..++.|.+.+..+. -.+.+.++|..|+||||+|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999987764 235678999999999999999887
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00029 Score=76.55 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=74.3
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc---------------------eee
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH---------------------YFD 180 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------------~F~ 180 (608)
+....+++|-+..++.+...+..+. -.+.+-++|+.|+||||+|+.+++ .+.. .|.
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk--~L~c~~~~~~~pCg~C~sC~~i~~~~~~ 88 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK--CLNCKTGVTAEPCNKCENCVAINNNSFI 88 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH--HhCCCCCCCCCCCcccHHHHHHhcCCCC
Confidence 3445689999999999999887653 245578899999999999999987 2211 111
Q ss_pred eeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH-hCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCC
Q 039772 181 CHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY-LMTKRYLIVIEDVWTI--GVWDVIREILPDNHN 257 (608)
Q Consensus 181 ~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 257 (608)
..+++..... ....+..++...+... ..+++-++|+|++... ..++.|...+-....
T Consensus 89 dlieidaas~--------------------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 89 DLIEIDAASR--------------------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred ceEEeecccc--------------------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 1222221110 0011111222222211 2356679999999744 567777777766555
Q ss_pred CcEEEEEccC
Q 039772 258 RSRVLITLTQ 267 (608)
Q Consensus 258 gs~IivTTR~ 267 (608)
.+++|.+|.+
T Consensus 149 ~v~fIL~Ttd 158 (546)
T PRK14957 149 YVKFILATTD 158 (546)
T ss_pred CceEEEEECC
Confidence 6767766655
No 82
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.00022 Score=72.37 Aligned_cols=108 Identities=17% Similarity=0.232 Sum_probs=63.0
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCC
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPS 205 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~ 205 (608)
.+++|-+..+.+ ++..+. +.-.-.||++|+||||||+.+.. .....|...-=+..
T Consensus 30 ~HLlg~~~~lrr---~v~~~~--l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~~sAv~~------------------ 84 (436)
T COG2256 30 EHLLGEGKPLRR---AVEAGH--LHSMILWGPPGTGKTTLARLIAG--TTNAAFEALSAVTS------------------ 84 (436)
T ss_pred HhhhCCCchHHH---HHhcCC--CceeEEECCCCCCHHHHHHHHHH--hhCCceEEeccccc------------------
Confidence 344444443333 333433 66667899999999999999999 66666644322211
Q ss_pred CCcccccccCHHHHHHHH-HHHhCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEE--EccC
Q 039772 206 SRLSEIMDKNYEMKKIIL-HEYLMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLI--TLTQ 267 (608)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TTR~ 267 (608)
...++....+.- +....+++.+|.+|.|..- .+-+.| +|.-.+|.-|+| ||-+
T Consensus 85 ------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTEN 142 (436)
T COG2256 85 ------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTEN 142 (436)
T ss_pred ------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCC
Confidence 111222222222 2334589999999999643 343433 344456777777 4555
No 83
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2e-05 Score=80.12 Aligned_cols=127 Identities=18% Similarity=0.137 Sum_probs=71.6
Q ss_pred CcceEEEEEeccccccc-ccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC--cccCCCC
Q 039772 436 PKKVKRLNAVKRQEDFA-YLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP--SGIENLF 510 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~-~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp--~~i~~L~ 510 (608)
...+..|.+..+...+. +.... +|.+..|.+.++... ........-++.|+.|||++|.+..++ ..++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~----~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII----LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc----ceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 34556666666655522 11111 666666666666422 112223345556667777777765555 5566677
Q ss_pred CccEEEecCCCCCc--CChH-----HHhcCccCcEEeccccccccchh--HhcccccCcEEEecCC
Q 039772 511 LLRYLKLNIPSLKS--LPSS-----LLSNLLNLYTLDMPFSYIEHTAD--EFWKMNKLRHLNFGSI 567 (608)
Q Consensus 511 ~Lr~L~l~~~~i~~--LP~s-----i~~~L~~L~~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~~ 567 (608)
.|+.|+++.|.|.+ +|+. . -..++|++|++..|++...|. .+..+.+|++|...+|
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt-~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKT-HTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhh-cccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 77777777766653 2442 2 245667777777776665554 4555666666665553
No 84
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00033 Score=77.25 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=41.0
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....++||.+..+..|.+++..+. -.+.+.++|..|+||||+|+.+.+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3455689999999999999988754 235688999999999999999887
No 85
>PRK10536 hypothetical protein; Provisional
Probab=97.59 E-value=0.00081 Score=65.40 Aligned_cols=58 Identities=9% Similarity=0.081 Sum_probs=43.2
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeee
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAW 184 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w 184 (608)
.+...+.++......+..+|... .++.+.|..|.|||+||.++..+.-..+.|+.++.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34456788999999999988663 38999999999999999998874222344554443
No 86
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=5.3e-05 Score=84.90 Aligned_cols=128 Identities=24% Similarity=0.242 Sum_probs=97.0
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc--cCCcccCCCCCccEEEecCCCCCcCChHHHhcCcc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~ 535 (608)
..+|+.|.+.|.... ...++...-..+|+|+.|.+.+-.+. ++-.-..++++|+.||+|+|+++.+ ..| ++|+|
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKN 196 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hcccc
Confidence 567888888775433 11466677788999999999998754 4444556789999999999999999 779 99999
Q ss_pred CcEEeccccccccchh--HhcccccCcEEEecCCCCCCcC-CC----CCCC-Ccccceeecc
Q 039772 536 LYTLDMPFSYIEHTAD--EFWKMNKLRHLNFGSITLPAHP-GK----YCGS-LENLNFISAL 589 (608)
Q Consensus 536 L~~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~-lP----~i~~-L~~L~~l~~~ 589 (608)
||+|-+++=.+..-+. .+-+|++|++||+|........ +. +.+. |..|+.++++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 9999998766665443 6889999999999994422221 12 2333 9999999998
No 87
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00036 Score=78.63 Aligned_cols=144 Identities=11% Similarity=0.046 Sum_probs=76.7
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce--eee-eeeEecccc-hHHHHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY--FDC-HAWIPDISY-ADQILDI 197 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~-~~wv~vs~~-~~~l~~~ 197 (608)
+....++||-+..++.+.+++..+. -...+.++|..|+||||+|+.+++ .+... ... -|..|-+.. +......
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk--~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 88 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAK--GLNCEQGVTATPCGVCSSCVEIAQGRFV 88 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH--hccCccCCCCCCCCCchHHHHHhcCCCc
Confidence 3455689999999999999887653 234568999999999999999998 33221 110 111110000 0000000
Q ss_pred HHHHhCCCCCcccccccCHHHHHHHHHH-HhCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccCchhh
Q 039772 198 VIKFLMPSSRLSEIMDKNYEMKKIILHE-YLMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQIEMV 271 (608)
Q Consensus 198 il~~l~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~~v 271 (608)
.+-.+..... ....+..++...+.. -..+++-++|+|++... +..+.|...+-......++|++|.++..+
T Consensus 89 DviEidAas~---~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 89 DLIEVDAASR---TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred eEEEeccccc---cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 0000000000 011111122222111 12367779999999754 56777776665555567777777663433
No 88
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.57 E-value=0.0004 Score=69.89 Aligned_cols=114 Identities=11% Similarity=0.171 Sum_probs=77.7
Q ss_pred CCCceechhhHHHHHHHHhcCCCC-ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc--hHHHHHHHHHH
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQ-LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY--ADQILDIVIKF 201 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~l~~~il~~ 201 (608)
.+.+.+|+..+..+..++...+.. +..|-|+|-.|.|||.+.+.+++.. .. ..+|+++-+. .+-++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHH
Confidence 467889999999999999877653 4556899999999999999999943 22 2679987777 88889999999
Q ss_pred hCC-CCCcccccc--cCHHHHHHHHHH--HhC--CCcEEEEEcCCCCHh
Q 039772 202 LMP-SSRLSEIMD--KNYEMKKIILHE--YLM--TKRYLIVIEDVWTIG 243 (608)
Q Consensus 202 l~~-~~~~~~~~~--~~~~~~~~~l~~--~L~--~kr~LlVLDdv~~~~ 243 (608)
... +.+...... ....+....+.+ ... ++.++||||+++...
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr 128 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR 128 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh
Confidence 852 221100011 112222222222 112 468999999997653
No 89
>PRK08727 hypothetical protein; Validated
Probab=97.56 E-value=0.00023 Score=69.51 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=36.3
Q ss_pred CCceech-hhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEec
Q 039772 126 RDTVGLD-DRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPD 187 (608)
Q Consensus 126 ~~~vGr~-~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 187 (608)
++|++.. .....+..+.... ....+.|+|..|+|||+||+++++ ....+...+.|++.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~ 77 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPL 77 (233)
T ss_pred hhccCCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeH
Confidence 3455444 3334333333222 235699999999999999999998 55444445566653
No 90
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.7e-05 Score=79.24 Aligned_cols=84 Identities=24% Similarity=0.140 Sum_probs=36.7
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCc-C--ccCCcccCCCCCccEEEecCCCCCcCC--hHHHhc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLV-L--IQYPSGIENLFLLRYLKLNIPSLKSLP--SSLLSN 532 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l--~~lp~~i~~L~~Lr~L~l~~~~i~~LP--~si~~~ 532 (608)
+++++.|.+.+|.... .........+++|.+|+|++|. + ...+ ..-+..|+.|+|++|++...| .-+ +.
T Consensus 196 l~~lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~-~~ 269 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKV-GT 269 (505)
T ss_pred hhhhheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccccccccccc-cc
Confidence 4445555555444432 2233344445555555555542 1 1122 122334455555555444443 234 45
Q ss_pred CccCcEEeccccccc
Q 039772 533 LLNLYTLDMPFSYIE 547 (608)
Q Consensus 533 L~~L~~L~L~~~~l~ 547 (608)
|+.|..|+++.|.+.
T Consensus 270 l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIA 284 (505)
T ss_pred ccchhhhhccccCcc
Confidence 555555555555333
No 91
>PRK08118 topology modulation protein; Reviewed
Probab=97.54 E-value=6e-05 Score=69.53 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=27.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCcccc-ceeeeeee
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAW 184 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 184 (608)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999954343 45676764
No 92
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.52 E-value=0.00011 Score=76.12 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=75.0
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCc-CccCCcccCCCCCccEEEecCC-CCCcCChHHHhcCcc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLV-LIQYPSGIENLFLLRYLKLNIP-SLKSLPSSLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~lp~~i~~L~~Lr~L~l~~~-~i~~LP~si~~~L~~ 535 (608)
+.+++.|.+.+|... .+|. -..+|+.|.+++|. ++.+|..+. .+|++|++++| .+..+|+++ ..
T Consensus 51 ~~~l~~L~Is~c~L~-----sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sL-e~--- 116 (426)
T PRK15386 51 ARASGRLYIKDCDIE-----SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESV-RS--- 116 (426)
T ss_pred hcCCCEEEeCCCCCc-----ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccccc-ce---
Confidence 788999999988543 2221 22368899998876 677887663 58999999988 888888765 43
Q ss_pred CcEEecccc---ccccchhHhcccc------------------cCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 536 LYTLDMPFS---YIEHTADEFWKMN------------------KLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 536 L~~L~L~~~---~l~~lP~~i~~L~------------------~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
|++.++ .+..||.++..|. +|++|++++ |.. ..+| .+. .+|+.|.++
T Consensus 117 ---L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~-c~~-i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 117 ---LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTG-CSN-IILPEKLP--ESLQSITLH 185 (426)
T ss_pred ---EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecC-CCc-ccCccccc--ccCcEEEec
Confidence 444443 5778888776663 788899987 443 3356 565 344444443
No 93
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.52 E-value=0.00038 Score=73.45 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=38.9
Q ss_pred CCCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...++.|+++.++++.+.+... -...+-|.++|++|.|||++|+++++
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 4457899999999999876431 12355688999999999999999999
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00078 Score=73.68 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=39.5
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....++||-+..++.+.+++..+. -.+.+-++|..|+||||+|+.+..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999888754 234567999999999999999977
No 95
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=3.1e-05 Score=66.59 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=54.3
Q ss_pred hccccceeEeecCCCcCccCCcccCCC-CCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcE
Q 039772 483 CGMFKLLRVLDLGSLVLIQYPSGIENL-FLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRH 561 (608)
Q Consensus 483 ~~~~~~Lr~L~L~~~~l~~lp~~i~~L-~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~ 561 (608)
+.....|...+|++|.++.+|+.+... +.+..|++.+|.|..+|..+ ..++.|+.|+++.|.+...|.-|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 344445555666666666666555433 25666666666666666665 6666666666666666666666666666666
Q ss_pred EEecCCCCCCcCCC
Q 039772 562 LNFGSITLPAHPGK 575 (608)
Q Consensus 562 L~l~~~~~~~~~lP 575 (608)
|+..+|. ..++|
T Consensus 128 Lds~~na--~~eid 139 (177)
T KOG4579|consen 128 LDSPENA--RAEID 139 (177)
T ss_pred hcCCCCc--cccCc
Confidence 6666644 33444
No 96
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.00077 Score=71.39 Aligned_cols=49 Identities=16% Similarity=0.020 Sum_probs=39.9
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|-+..++.+.+++..+. -...+-++|+.|+||||+|..+++
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence 4455789999988888888887664 234588999999999999999887
No 97
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.48 E-value=1.9e-05 Score=79.33 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=32.1
Q ss_pred hHHhhccccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEec
Q 039772 479 WEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDM 541 (608)
Q Consensus 479 ~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L 541 (608)
+...|..+..|+.|.+..|.+..++ +.+..|++|+.|.+..|.+..++..-|..+.+++++.+
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence 3344444444444444444444332 33445566666666666666666622255555555544
No 98
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00074 Score=72.59 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=39.3
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
|....++||.+...+.+...+..+. -.+.+-++|++|+||||+|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455689999888888888776654 235678999999999999999987
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.47 E-value=0.0006 Score=66.72 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDI 188 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 188 (608)
.+.+.|+|+.|+|||+||+++++ .....-..+.|+++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHH
Confidence 46789999999999999999998 444333345666543
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.00082 Score=73.04 Aligned_cols=124 Identities=10% Similarity=0.088 Sum_probs=75.6
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc-------------------eeeee
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH-------------------YFDCH 182 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~ 182 (608)
+....++||-+..++.+.+++..+. -...+-++|+.|+||||+|+.+++.--... .|..+
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 4455789999999999999997764 234578999999999999998887311111 12222
Q ss_pred eeEecccc--hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCC
Q 039772 183 AWIPDISY--ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDVIREILPDNHNR 258 (608)
Q Consensus 183 ~wv~vs~~--~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 258 (608)
+.+..+.. +.. .+++++.+... -..++.-++|+|+|... +..+.+...+-...+.
T Consensus 91 ~eidaas~~~v~~-iR~l~~~~~~~--------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDAASRTKVED-TRELLDNIPYA--------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEcccccCCHHH-HHHHHHHHhhc--------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 33322111 111 12222221110 01245668899999754 5667777766655557
Q ss_pred cEEEEEccC
Q 039772 259 SRVLITLTQ 267 (608)
Q Consensus 259 s~IivTTR~ 267 (608)
+++|.+|.+
T Consensus 150 ~~fIlattd 158 (509)
T PRK14958 150 VKFILATTD 158 (509)
T ss_pred eEEEEEECC
Confidence 778777766
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=97.42 E-value=0.00059 Score=66.69 Aligned_cols=90 Identities=16% Similarity=0.266 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM 228 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 228 (608)
...+.|+|..|+|||.||+++++ .....-..++|++..+ +... ...+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~----~~~~----------------------~~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE----LLDR----------------------GPELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH----HHhh----------------------hHHHHHhhh
Confidence 36789999999999999999988 4443323466776321 1100 012223333
Q ss_pred CCcEEEEEcCCCCH---hHHHH-HhhhcCC-CCCCcEEEEEccC
Q 039772 229 TKRYLIVIEDVWTI---GVWDV-IREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 229 ~kr~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gs~IivTTR~ 267 (608)
+-. ++|+||+... ..|+. +...+.. ..+|..||+||+.
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~ 139 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 222 6788999633 34432 4444432 2346789998887
No 102
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0013 Score=71.12 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=76.1
Q ss_pred CCCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceee-----eeeeEecccchHHHH
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFD-----CHAWIPDISYADQIL 195 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-----~~~wv~vs~~~~~l~ 195 (608)
.+....+++|-+..+..+...+..+. -.+-+-++|..|+||||+|+.+++.-.....+. ..|..|-+ -
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~------C 88 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN------C 88 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH------H
Confidence 34455688999999998888776653 245788999999999999999988321111110 01111100 0
Q ss_pred HHHHHHhCCCCCccc---ccccCHHHHHHHHHHH----hCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEcc
Q 039772 196 DIVIKFLMPSSRLSE---IMDKNYEMKKIILHEY----LMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLT 266 (608)
Q Consensus 196 ~~il~~l~~~~~~~~---~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR 266 (608)
..+.... ..+.-+ ......++....+... ..+++-++|+|+++.. ..++.|...+....+.+.+|++|.
T Consensus 89 ~~i~~~~--h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 89 ISFNNHN--HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred HHHhcCC--CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 0000000 000000 0111222222222111 2356778999999864 568888877776556677766554
Q ss_pred C
Q 039772 267 Q 267 (608)
Q Consensus 267 ~ 267 (608)
.
T Consensus 167 e 167 (507)
T PRK06645 167 E 167 (507)
T ss_pred C
Confidence 4
No 103
>PRK12377 putative replication protein; Provisional
Probab=97.38 E-value=0.00048 Score=67.49 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM 228 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 228 (608)
..-+.++|..|+|||+||.++++ .+......++|+++. ++...+-...... .+.. .+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~----~l~~~l~~~~~~~--------~~~~----~~l~~l- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP----DVMSRLHESYDNG--------QSGE----KFLQEL- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH----HHHHHHHHHHhcc--------chHH----HHHHHh-
Confidence 45789999999999999999999 555554446777653 2333333222110 1111 122222
Q ss_pred CCcEEEEEcCCCCH--hHH--HHHhhhcCCC-CCCcEEEEEccC
Q 039772 229 TKRYLIVIEDVWTI--GVW--DVIREILPDN-HNRSRVLITLTQ 267 (608)
Q Consensus 229 ~kr~LlVLDdv~~~--~~~--~~l~~~~~~~-~~gs~IivTTR~ 267 (608)
.+-=||||||+... ..| +.|...+... .+.--+||||-.
T Consensus 162 ~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 162 CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 35668999999432 223 2333322211 122346778776
No 104
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0011 Score=73.22 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=39.8
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455689998888888888887764 346678999999999999999865
No 105
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.00086 Score=71.23 Aligned_cols=142 Identities=13% Similarity=0.039 Sum_probs=76.2
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee--e-eeeeEecccchHHHHHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF--D-CHAWIPDISYADQILDIV 198 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~-~~~wv~vs~~~~~l~~~i 198 (608)
+....++||-+..+..+..++..+. -.+.+.++|..|+||||+|+.+++ .+...- . ..|..|-+ ...+...+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk--~Lnce~~~~~~pCg~C~s--C~~i~~g~ 88 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK--RLNCENPIGNEPCNECTS--CLEITKGI 88 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH--hcCcccccCccccCCCcH--HHHHHccC
Confidence 3455689999999999999888765 224578999999999999999988 332210 0 01111111 11111110
Q ss_pred HHHh---CCCCCcccccccCHHHHHHHHHHH-hCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccCchhh
Q 039772 199 IKFL---MPSSRLSEIMDKNYEMKKIILHEY-LMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQIEMV 271 (608)
Q Consensus 199 l~~l---~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~~v 271 (608)
...+ ..... ....+..++.+.+... ..++.-++|+|++... +.++.|...+-.......+|.+|.++..+
T Consensus 89 ~~dviEIdaas~---~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 89 SSDVLEIDAASN---RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred Cccceeechhhc---ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 0000 00000 0111112222222211 2356678999999754 56777776665444455555555552444
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0011 Score=71.16 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=73.7
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccc---------------------ceee
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVK---------------------HYFD 180 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~ 180 (608)
+....++||-+..++.+.+.+..+. -.+-+-++|+.|+||||+|+.++. .+- ..+.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk--~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL--CLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH--HHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 3455789999988888888887654 234788999999999999998876 211 0111
Q ss_pred eeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH----hCCCcEEEEEcCCCCH--hHHHHHhhhcCC
Q 039772 181 CHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY----LMTKRYLIVIEDVWTI--GVWDVIREILPD 254 (608)
Q Consensus 181 ~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~ 254 (608)
.++.++.+.. ...++..+.+... ..+++-++|+|++... +..+.|...+-.
T Consensus 86 Dv~eidaas~-----------------------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe 142 (491)
T PRK14964 86 DVIEIDAASN-----------------------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE 142 (491)
T ss_pred CEEEEecccC-----------------------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC
Confidence 2233332211 1112211111110 1245668999999754 467777777766
Q ss_pred CCCCcEEEEEccC
Q 039772 255 NHNRSRVLITLTQ 267 (608)
Q Consensus 255 ~~~gs~IivTTR~ 267 (608)
-.+.+++|++|.+
T Consensus 143 Pp~~v~fIlatte 155 (491)
T PRK14964 143 PAPHVKFILATTE 155 (491)
T ss_pred CCCCeEEEEEeCC
Confidence 6667778777755
No 107
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.35 E-value=0.0014 Score=63.28 Aligned_cols=120 Identities=12% Similarity=0.155 Sum_probs=66.9
Q ss_pred ceec-hhhHHHHHHHHhcC-CCCceEEEEEcCCCcchHHHHHHHhcCccccceeee--eeeEecccchHHHHHHHHHHhC
Q 039772 128 TVGL-DDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC--HAWIPDISYADQILDIVIKFLM 203 (608)
Q Consensus 128 ~vGr-~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~l~~~il~~l~ 203 (608)
++|- ....-.....+... +.....+.|+|..|.|||.|.+++++ ++....+. ++|++. .++...+...+.
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~----~~f~~~~~~~~~ 84 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSA----EEFIREFADALR 84 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEH----HHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecH----HHHHHHHHHHHH
Confidence 3564 23333444444443 33455688999999999999999999 66554433 556653 334444444443
Q ss_pred CCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH---hHHH-HHhhhcCC-CCCCcEEEEEccC
Q 039772 204 PSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI---GVWD-VIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~-~l~~~~~~-~~~gs~IivTTR~ 267 (608)
.. . ...+++.+++ -=+|++||+... ..|. .+...+.. ...|-+||+|+..
T Consensus 85 ~~---------~----~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 85 DG---------E----IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp TT---------S----HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cc---------c----chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 21 1 2234444543 346789999754 2232 22222221 1346789999977
No 108
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.34 E-value=0.0019 Score=67.56 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=40.2
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|.+..++.+.+.+..+. -.+.+-++|..|+||||+|+.+..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445678999999999999887653 245678999999999999988876
No 109
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.32 E-value=5.4e-05 Score=80.86 Aligned_cols=102 Identities=23% Similarity=0.313 Sum_probs=54.6
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
+.++..+.+.++... .+...+..+.+|++|+++++.|..+. ++..|..|+.|++++|.|..++. + ..+.+|+
T Consensus 94 ~~~l~~l~l~~n~i~-----~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~-~~l~~L~ 165 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIE-----KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-L-ESLKSLK 165 (414)
T ss_pred ccceeeeeccccchh-----hcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-C-ccchhhh
Confidence 445555555555443 11122455666666666666655443 24445556666666666655554 3 4456666
Q ss_pred EEeccccccccchhH-hcccccCcEEEecCC
Q 039772 538 TLDMPFSYIEHTADE-FWKMNKLRHLNFGSI 567 (608)
Q Consensus 538 ~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~ 567 (608)
.+++++|.+..++.. +..+.+|+.|++.+|
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 666666655555443 355556666666553
No 110
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.001 Score=73.52 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=40.5
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....++||-+..++.+.+.+..+. -.+.+-++|..|+||||+|+.+++
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999887764 234568999999999999999987
No 111
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.31 E-value=0.00046 Score=68.02 Aligned_cols=90 Identities=11% Similarity=0.167 Sum_probs=55.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeee-eEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHA-WIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
+.++|.|..|.||||||+.+++ .++.+|+.++ ++-+++. +.++.+.+...=.... +.+.....-..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5789999999999999999999 7777775544 4445555 6666666654311110 10000001111
Q ss_pred HHHHHHHHHh--C-CCcEEEEEcCCCC
Q 039772 218 MKKIILHEYL--M-TKRYLIVIEDVWT 241 (608)
Q Consensus 218 ~~~~~l~~~L--~-~kr~LlVLDdv~~ 241 (608)
...-.+-+++ + ++.+|+++||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 2223345555 3 8999999999843
No 112
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=8.9e-06 Score=87.32 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=37.4
Q ss_pred HhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCc
Q 039772 481 KICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLR 560 (608)
Q Consensus 481 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~ 560 (608)
..+.-++.|+.|+|+.|.+...- .+..|.+|+.|||++|.+..+|.-- ..--+|+.|.+++|.+.+|- +|.+|.+|+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~-~~gc~L~~L~lrnN~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLS-MVGCKLQLLNLRNNALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccc-hhhhhheeeeecccHHHhhh-hHHhhhhhh
Confidence 33444444445555555444332 3444444555555554444444310 00012455555555444443 244555555
Q ss_pred EEEecCCC
Q 039772 561 HLNFGSIT 568 (608)
Q Consensus 561 ~L~l~~~~ 568 (608)
+|++++||
T Consensus 258 ~LDlsyNl 265 (1096)
T KOG1859|consen 258 GLDLSYNL 265 (1096)
T ss_pred ccchhHhh
Confidence 55555544
No 113
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.00043 Score=66.89 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=29.2
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEe
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIP 186 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 186 (608)
.++|+|..|.|||||...+.. ...+.|+.+++++
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEe
Confidence 577999999999999999998 6888997776665
No 114
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0018 Score=67.92 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=38.6
Q ss_pred CCCceechhhHHHHHHHHhcCCC--------CceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPP--------QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+++|-+..++.+.+.+..+.. -.+-+-++|+.|+||||+|+.+++
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 35789999999999999977531 246688999999999999999876
No 115
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.27 E-value=0.00049 Score=65.21 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=39.3
Q ss_pred CCCCCCceechhhHHHHHHHHhc---CCCCceEEEEEcCCCcchHHHHHHHhcCccccceee
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIE---GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFD 180 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 180 (608)
+..-.++||-+.-++.+.-++.. ..+.+.-+-.||++|+||||||..+++ +....|.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~ 79 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK 79 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE
Confidence 34567999999988887666543 234577889999999999999999999 6666663
No 116
>PRK08181 transposase; Validated
Probab=97.26 E-value=0.00046 Score=68.45 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=53.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT 229 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 229 (608)
.-+.++|.+|.|||.||.++.+ ......-.++|+++. ++...+..... ..+...... .+ .
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~~----~L~~~l~~a~~---------~~~~~~~l~----~l-~ 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRTT----DLVQKLQVARR---------ELQLESAIA----KL-D 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeHH----HHHHHHHHHHh---------CCcHHHHHH----HH-h
Confidence 3489999999999999999998 554444446666642 23333322211 111222222 22 2
Q ss_pred CcEEEEEcCCCCH--hHH--HHHhhhcCCCCCCcEEEEEccC
Q 039772 230 KRYLIVIEDVWTI--GVW--DVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 230 kr~LlVLDdv~~~--~~~--~~l~~~~~~~~~gs~IivTTR~ 267 (608)
+-=||||||+... ..+ +.+...+...-.+..+||||..
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3459999999643 111 2333333321112358888887
No 117
>PRK06921 hypothetical protein; Provisional
Probab=97.26 E-value=0.0007 Score=67.36 Aligned_cols=37 Identities=24% Similarity=0.134 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccce-eeeeeeEec
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWIPD 187 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v 187 (608)
..-+.++|..|+|||+||.++++ .+... -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 46789999999999999999999 55544 344667764
No 118
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.25 E-value=6.2e-05 Score=64.82 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=74.6
Q ss_pred ceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEe
Q 039772 461 LHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLD 540 (608)
Q Consensus 461 LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~ 540 (608)
|....+.++... .+++.+..+++.+..|+|++|.+.++|..+..++.||.|+++.|.+...|.-| ..|.+|-.|+
T Consensus 55 l~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~~Ld 129 (177)
T KOG4579|consen 55 LTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLDMLD 129 (177)
T ss_pred EEEEecccchhh----hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHHHhc
Confidence 344455555543 46667778888999999999999999999999999999999999999999999 8899999999
Q ss_pred ccccccccchhH
Q 039772 541 MPFSYIEHTADE 552 (608)
Q Consensus 541 L~~~~l~~lP~~ 552 (608)
..++...++|-.
T Consensus 130 s~~na~~eid~d 141 (177)
T KOG4579|consen 130 SPENARAEIDVD 141 (177)
T ss_pred CCCCccccCcHH
Confidence 999988888875
No 119
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.25 E-value=6.9e-06 Score=88.12 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=77.6
Q ss_pred eeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCC
Q 039772 489 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSI 567 (608)
Q Consensus 489 Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~ 567 (608)
|.+-+.++|.+..+-.++.-+++|+.|||+.|++...- .+ ..|.+|.+|||+.|.+..+|. ++... +|+.|++++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~L-r~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NL-RRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HH-Hhcccccccccccchhccccccchhhh-hheeeeeccc
Confidence 44556666667667777888889999999999888777 57 889999999999999998887 44444 4999999997
Q ss_pred CCCCcCCCCCCCCcccceeecc
Q 039772 568 TLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 568 ~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
. +..+-+|.+|.+|.+|+++
T Consensus 243 ~--l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 243 A--LTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred H--HHhhhhHHhhhhhhccchh
Confidence 6 6666688899999999998
No 120
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=2.5e-05 Score=75.64 Aligned_cols=144 Identities=22% Similarity=0.169 Sum_probs=89.5
Q ss_pred ceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-----cCCcccCCCC
Q 039772 438 KVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-----QYPSGIENLF 510 (608)
Q Consensus 438 ~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~L~ 510 (608)
++..+++.+...+..+...+ -++|+.|.+..+..... ....-.+.+++.|..|+++.|.+. -+-.+|+ .
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~--n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e 286 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE--NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--E 286 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccch--hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--h
Confidence 44555555555443333333 56677777776655321 234456677777777777777643 1122333 3
Q ss_pred CccEEEecCC--CC--CcCChHHHhcCccCcEEecccc-ccc-cchhHhcccccCcEEEecCCCCCCcCCC----CCCCC
Q 039772 511 LLRYLKLNIP--SL--KSLPSSLLSNLLNLYTLDMPFS-YIE-HTADEFWKMNKLRHLNFGSITLPAHPGK----YCGSL 580 (608)
Q Consensus 511 ~Lr~L~l~~~--~i--~~LP~si~~~L~~L~~L~L~~~-~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~lP----~i~~L 580 (608)
+|..|+++|+ ++ ..+.-=. .+.++|..|||++| .+. .+-..+-+++-|+||.++. |+.+ +| .+...
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~-~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsR-CY~i--~p~~~~~l~s~ 362 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSR-CYDI--IPETLLELNSK 362 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHH-HhCCceeeeccccccccCchHHHHHHhcchheeeehhh-hcCC--ChHHeeeeccC
Confidence 5777788775 12 2222223 57789999999999 555 3445678899999999999 7543 44 45557
Q ss_pred cccceeecc
Q 039772 581 ENLNFISAL 589 (608)
Q Consensus 581 ~~L~~l~~~ 589 (608)
.+|.++++.
T Consensus 363 psl~yLdv~ 371 (419)
T KOG2120|consen 363 PSLVYLDVF 371 (419)
T ss_pred cceEEEEec
Confidence 778888776
No 121
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.0011 Score=72.37 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=40.9
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
|....+++|.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+++
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4455789999999999999887653 235688999999999999999987
No 122
>PRK09087 hypothetical protein; Validated
Probab=97.23 E-value=0.0053 Score=59.53 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.+.+.|||..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999983
No 123
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.22 E-value=0.0018 Score=69.78 Aligned_cols=53 Identities=23% Similarity=0.193 Sum_probs=40.4
Q ss_pred CCCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
...++.|.+..++++.+.+... -...+-+.++|++|.|||++|+++++ .+...
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~--eL~~~ 243 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN--SLAQR 243 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH--hhccc
Confidence 3467889999999998876431 12345588999999999999999999 55433
No 124
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.22 E-value=0.0059 Score=70.67 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=41.7
Q ss_pred CceechhhHHHHHHHHhcC-CCCceEEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 127 DTVGLDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
.++||+.+++.|...+..- ...-.++.+.|..|||||+++++|.. .+...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcc
Confidence 4789999999999988763 33467999999999999999999998 55544
No 125
>PRK06526 transposase; Provisional
Probab=97.22 E-value=0.00032 Score=69.16 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.-+.++|.+|.|||+||.++.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHH
Confidence 4588999999999999999988
No 126
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.21 E-value=0.0039 Score=58.76 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 229 TKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 229 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
+.+-++|+||+... +..+.|...+....+.+.+|++|++
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 135 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPS 135 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 45668999999754 4577777777665667778888877
No 127
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.0019 Score=66.80 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=79.8
Q ss_pred CCCCCCCceechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEec-ccc-hHHHHH
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPD-ISY-ADQILD 196 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-s~~-~~~l~~ 196 (608)
.+..+..++||+.++..+.+++... .+..+-+-|.|-+|.|||.+...++.+..-...=..++++.. +-. ..+++.
T Consensus 145 ~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 145 NTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred hcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3456788999999999999998764 345678999999999999999999985322221123455543 323 777888
Q ss_pred HHHHHhCCCCCcccccccCHHHHHHHHHHHhCCC--cEEEEEcCCCCH
Q 039772 197 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTK--RYLIVIEDVWTI 242 (608)
Q Consensus 197 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~ 242 (608)
.|...+..... ......+..+.+.....+. -+++|||.++..
T Consensus 225 kI~~~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 225 KIFSSLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 88877733221 1112245556666666553 589999999654
No 128
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.19 E-value=0.0012 Score=66.00 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=65.7
Q ss_pred CCceechhhHH---HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc--hHHHHHHHHH
Q 039772 126 RDTVGLDDRME---ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY--ADQILDIVIK 200 (608)
Q Consensus 126 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~l~~~il~ 200 (608)
.+.||-+..+. -+.+++..+ ...-+.+||++|.||||||+.+.+...-.. ..||..|-. -..-.+.|++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 34555443332 233334444 377788999999999999999999544333 346666544 2222333333
Q ss_pred HhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEE--EccC
Q 039772 201 FLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLI--TLTQ 267 (608)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TTR~ 267 (608)
+-.. ...+.++|..|.+|.|..- .+-+ ..+|.-.+|+-++| ||.+
T Consensus 212 ~aq~-------------------~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTEN 260 (554)
T KOG2028|consen 212 QAQN-------------------EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTEN 260 (554)
T ss_pred HHHH-------------------HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCC
Confidence 3211 1124567889999999432 2222 34555566777776 5555
No 129
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.19 E-value=0.0018 Score=68.15 Aligned_cols=55 Identities=20% Similarity=0.131 Sum_probs=41.6
Q ss_pred CCCCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
....++.|.+..+++|.+.+... -...+-+.++|++|.|||++|+++++ .....|
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~f 207 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATF 207 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE
Confidence 34567899999999998876421 02356788999999999999999999 444443
No 130
>PHA00729 NTP-binding motif containing protein
Probab=97.19 E-value=0.001 Score=63.61 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+++.+...+ ...|.|.|.+|+||||||.++.+
T Consensus 8 ~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH
Confidence 444444443 56789999999999999999998
No 131
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0028 Score=70.23 Aligned_cols=49 Identities=16% Similarity=-0.010 Sum_probs=39.7
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....++||-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 4455789999999999888887653 235588999999999999988887
No 132
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0016 Score=70.84 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=43.9
Q ss_pred CCCceechhhHHHHHHHHhcC----CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 125 SRDTVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
..+-+|.+.-+++|++.|.-. .-.-+++..||++|+|||.|++.++. .....|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 467889999999999998532 22347999999999999999999999 666665
No 133
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0032 Score=66.16 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
|..-.+++|.+...+.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445688999999999999997753 245788999999999999999987
No 134
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.16 E-value=0.0092 Score=63.98 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceee--eeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFD--CHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 226 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 226 (608)
..-+.|+|.+|+|||+||+++++ .+...++ .++|++.. ++...+...+... +.+ .+++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~~----~f~~~~~~~~~~~---------~~~----~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE----KFLNDLVDSMKEG---------KLN----EFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEHH----HHHHHHHHHHhcc---------cHH----HHHHH
Confidence 34589999999999999999999 6655443 25666532 3444444444211 111 23333
Q ss_pred hCCCcEEEEEcCCCCH---hHH-HHHhhhcCC-CCCCcEEEEEccC
Q 039772 227 LMTKRYLIVIEDVWTI---GVW-DVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 227 L~~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
+..+.-+|++||+... ..+ +.+...+.. ...|..||+||..
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~ 236 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 3344568999999743 111 223222221 1224578888855
No 135
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.15 E-value=0.0019 Score=64.26 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=32.7
Q ss_pred CceechhhHHHHHHHHhc-------------CCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 127 DTVGLDDRMEELLDLLIE-------------GPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+++|.+..+++|.+.... ..+...-+.++|++|.||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 578888777776543211 012455678999999999999999987
No 136
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.10 E-value=0.0014 Score=67.30 Aligned_cols=105 Identities=10% Similarity=-0.059 Sum_probs=64.7
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee-ee-eeeEecccc---hHHHHHHHHHHhCCCCC-
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF-DC-HAWIPDISY---ADQILDIVIKFLMPSSR- 207 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~-~~wv~vs~~---~~~l~~~il~~l~~~~~- 207 (608)
-..++++.+..-..+ +-+.|+|..|+|||||++.+++ .+.... +. ++|+.+.+. +.++.+.+...+..+..
T Consensus 119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 334577777653222 4569999999999999999988 554433 33 356666666 88888888887765331
Q ss_pred cccccccCHHHHHHHHHHHh--CCCcEEEEEcCCCC
Q 039772 208 LSEIMDKNYEMKKIILHEYL--MTKRYLIVIEDVWT 241 (608)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~ 241 (608)
.+.............+-+++ ++++++||+|++-.
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 00011111111222222233 57999999999943
No 137
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0042 Score=68.35 Aligned_cols=49 Identities=20% Similarity=0.106 Sum_probs=40.5
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....++||-+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999988764 234578999999999999999987
No 138
>PRK09183 transposase/IS protein; Provisional
Probab=97.07 E-value=0.0015 Score=64.73 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.0
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+.|+|.+|+|||+||.++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999987
No 139
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.05 E-value=0.0019 Score=74.94 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=38.6
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-..++||+.++.+++..|..... .-+.++|.+|+||||+|+.+..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988652 3355899999999999999998
No 140
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.04 E-value=0.0017 Score=63.51 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCccccccc
Q 039772 135 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDK 214 (608)
Q Consensus 135 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~ 214 (608)
+..+.++...-......+.++|.+|.|||+||.++++ .....-..++++++. ++...+-..... ...
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it~~----~l~~~l~~~~~~-------~~~ 151 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIITVA----DIMSAMKDTFSN-------SET 151 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEHH----HHHHHHHHHHhh-------ccc
Confidence 3444444433222345788999999999999999999 554443456666643 233333222211 111
Q ss_pred CHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHH--HhhhcCC-CCCCcEEEEEccC
Q 039772 215 NYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDV--IREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 215 ~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~--l~~~~~~-~~~gs~IivTTR~ 267 (608)
+.+ .+.+.+. +.=+||+||+... .+|+. +...+.. ....-.+||||..
T Consensus 152 ~~~----~~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 152 SEE----QLLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cHH----HHHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 122 2333344 3458888999654 34442 2222221 1113446777766
No 141
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.03 E-value=0.0024 Score=62.18 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=30.4
Q ss_pred CCce-echhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTV-GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~v-Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++|+ |.+.........+.......+.+.|+|..|+|||+||+++++
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444 554444333333333223356788999999999999999998
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.02 E-value=0.0057 Score=58.86 Aligned_cols=119 Identities=11% Similarity=0.138 Sum_probs=72.5
Q ss_pred CCCCCCCceechhhHHHHHHHHh---cCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHH
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLI---EGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDI 197 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~ 197 (608)
.+....+++|.+..++.+++-.. .+. ...-+-+||..|.|||++++++.+ +....= .--|.|.+.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~--~y~~~G--LRlIev~k~------- 89 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLN--EYADQG--LRLIEVSKE------- 89 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHH--HHhhcC--ceEEEECHH-------
Confidence 34556789999999998876532 222 245577899999999999999998 333211 112223322
Q ss_pred HHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCC---HhHHHHHhhhcCC---CCCCcEEEEEccC
Q 039772 198 VIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWT---IGVWDVIREILPD---NHNRSRVLITLTQ 267 (608)
Q Consensus 198 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~l~~~~~~---~~~gs~IivTTR~ 267 (608)
...+...+.+.|+. ...||+|.+||..= ...+..|+..+.. ..|..-+|..|-+
T Consensus 90 --------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 90 --------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred --------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 22233344444442 34799999999852 2467777776653 2344444444444
No 143
>PRK14974 cell division protein FtsY; Provisional
Probab=97.02 E-value=0.033 Score=57.13 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccce-eeeeeeEecc--cc-hHHHHHHHHHHhCCCCCcccccccCHHHH-HHH
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWIPDI--SY-ADQILDIVIKFLMPSSRLSEIMDKNYEMK-KII 222 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs--~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~-~~~ 222 (608)
...+|.++|++|+||||++..++. ..... +. ++.+... +. ..+-++.....++..... .....+.... ...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~-V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~-~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFS-VVIAAGDTFRAGAIEQLEEHAERLGVKVIK-HKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCe-EEEecCCcCcHHHHHHHHHHHHHcCCceec-ccCCCCHHHHHHHH
Confidence 368999999999999998887776 34332 32 3334422 12 333445555655532110 0112222222 233
Q ss_pred HHHHhCCCcEEEEEcCCCCH----hHHHHHhhhcCCCCCCcEEEEEc
Q 039772 223 LHEYLMTKRYLIVIEDVWTI----GVWDVIREILPDNHNRSRVLITL 265 (608)
Q Consensus 223 l~~~L~~kr~LlVLDdv~~~----~~~~~l~~~~~~~~~gs~IivTT 265 (608)
+...-....=+|++|-.-.. ..++.+........+...++|..
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred HHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeec
Confidence 33322222338888887543 33444443332233344455543
No 144
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.01 E-value=0.0052 Score=61.90 Aligned_cols=121 Identities=10% Similarity=0.141 Sum_probs=62.6
Q ss_pred CceechhhHHHHHHHHh---cC----------CCCceEEEEEcCCCcchHHHHHHHhcCccccc--eeeeeeeEecccch
Q 039772 127 DTVGLDDRMEELLDLLI---EG----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKH--YFDCHAWIPDISYA 191 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~---~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~ 191 (608)
.++|.++.+++|.++.. .. .....-+.++|.+|.||||+|+.++. .+.. ......|+.++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~--~l~~~g~~~~~~~v~v~~~- 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ--ILHRLGYVRKGHLVSVTRD- 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH--HHHHcCCcccceEEEecHH-
Confidence 56777777766655321 10 00122477999999999999988776 3322 1111224444322
Q ss_pred HHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCC-----------HhHHHHHhhhcCCCCCCcE
Q 039772 192 DQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWT-----------IGVWDVIREILPDNHNRSR 260 (608)
Q Consensus 192 ~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~-----------~~~~~~l~~~~~~~~~gs~ 260 (608)
++...+.+.. .......+.+ . ..-+|+||++.. .+.++.|...+.....+.+
T Consensus 100 -----~l~~~~~g~~---------~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 100 -----DLVGQYIGHT---------APKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred -----HHhHhhcccc---------hHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 1222222111 1112222222 1 235888999962 2344556666555555667
Q ss_pred EEEEccC
Q 039772 261 VLITLTQ 267 (608)
Q Consensus 261 IivTTR~ 267 (608)
||.+|..
T Consensus 163 vI~a~~~ 169 (284)
T TIGR02880 163 VILAGYK 169 (284)
T ss_pred EEEeCCc
Confidence 7777655
No 145
>PRK07261 topology modulation protein; Provisional
Probab=97.00 E-value=0.0016 Score=60.37 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=41.2
Q ss_pred EEEEEcCCCcchHHHHHHHhcCcccc-ceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT 229 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 229 (608)
.|.|+|++|+||||||+.+.....+. -+.|...|-.. ....+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48999999999999999998732111 12344444210 0122345566666667766
Q ss_pred CcEEEEEcCCCCH
Q 039772 230 KRYLIVIEDVWTI 242 (608)
Q Consensus 230 kr~LlVLDdv~~~ 242 (608)
.+ .|+|+....
T Consensus 59 ~~--wIidg~~~~ 69 (171)
T PRK07261 59 HD--WIIDGNYSW 69 (171)
T ss_pred CC--EEEcCcchh
Confidence 66 677887543
No 146
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0056 Score=66.25 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=39.9
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|-+..++.+.+.+..+. -.+.+.++|..|+||||+|+.++.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445688999999999999997754 245567899999999999999877
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.99 E-value=0.0028 Score=72.50 Aligned_cols=115 Identities=10% Similarity=0.214 Sum_probs=65.5
Q ss_pred CCCceechhhHHHHHHHHhcC-------CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHH
Q 039772 125 SRDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILD 196 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~ 196 (608)
...++|-+..++.+.+.+... .....++.++|+.|+|||+||+.++. .... ..+.++.++- -..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l~~---~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--ALGV---HLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--HhcC---CeEEEeCchhhhcc---
Confidence 457899999999998887642 11245688999999999999999998 4422 2334443332 100
Q ss_pred HHHHHhCCCCCcccccccCHHHHHHHHHHHhCCC-cEEEEEcCCCCH--hHHHHHhhhcC
Q 039772 197 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTK-RYLIVIEDVWTI--GVWDVIREILP 253 (608)
Q Consensus 197 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~--~~~~~l~~~~~ 253 (608)
.+...++.... ....+. ...+.+.++.+ .-+|+||+++.. +.++.|...+.
T Consensus 525 ~~~~lig~~~g---yvg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 525 TVSRLIGAPPG---YVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred cHHHHhcCCCC---Ccccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 11111211110 011111 12233334333 459999999854 56666666554
No 148
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.99 E-value=0.00038 Score=64.87 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=25.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEec
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPD 187 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 187 (608)
.-+.++|..|+|||.||.++.+ +...+=..+.|++.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFITA 83 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEH
T ss_pred eEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEeec
Confidence 4588999999999999999998 44333233566764
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.98 E-value=0.0074 Score=66.11 Aligned_cols=98 Identities=8% Similarity=0.166 Sum_probs=55.1
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceee--eeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHh
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFD--CHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 227 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 227 (608)
.-+.|+|..|.|||.|++++++ .....+. .++|++.. ++..++...+... . ...+++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yitae----ef~~el~~al~~~---------~----~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSSE----EFTNEFINSIRDG---------K----GDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH----HHHHHHHHHHHhc---------c----HHHHHHHh
Confidence 4589999999999999999999 5554332 24566532 2333333333210 1 12233333
Q ss_pred CCCcEEEEEcCCCCH---hHH-HHHhhhcCC-CCCCcEEEEEccC
Q 039772 228 MTKRYLIVIEDVWTI---GVW-DVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 228 ~~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
.+ -=+|||||+... +.| +.|...+.. ...|..|||||..
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 33 347888999643 222 223333321 1235678888887
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.98 E-value=0.0036 Score=72.61 Aligned_cols=119 Identities=13% Similarity=0.208 Sum_probs=65.8
Q ss_pred CCCceechhhHHHHHHHHhcC-------CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHH
Q 039772 125 SRDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDI 197 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~ 197 (608)
...++|.+..++.+...+... +....++.++|+.|+|||++|+.+++ .....-...+.++.+.-... .
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~~~---~ 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMSEFMEK---H 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhhhh---h
Confidence 356899999999998887642 11235788999999999999999997 33222122334443322111 1
Q ss_pred HHHHhCCCCCcccccccCHHHHHHHHHHHhCC-CcEEEEEcCCCC--HhHHHHHhhhcC
Q 039772 198 VIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIEDVWT--IGVWDVIREILP 253 (608)
Q Consensus 198 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~--~~~~~~l~~~~~ 253 (608)
....+.+..+ .....+. ...+.+.++. ..-+|+|||+.. .+.++.|...+.
T Consensus 642 ~~~~LiG~~p--gy~g~~~---~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 642 SVSRLVGAPP--GYVGYEE---GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred hHHHHhCCCC--cccccch---hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 1222222111 0011111 1123333323 236899999974 466777766554
No 151
>CHL00181 cbbX CbbX; Provisional
Probab=96.98 E-value=0.0071 Score=60.90 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.3
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+.++|.+|.||||+|+.+++
T Consensus 61 ~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999987
No 152
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.0053 Score=68.33 Aligned_cols=138 Identities=13% Similarity=0.146 Sum_probs=74.4
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKF 201 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~ 201 (608)
+....++||-+..++.+...+..+. -.+.+.++|..|+||||+|+.+++ .+.......-+-..+ .-...+.|...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~--~l~c~~~~~~~~~c~--~c~~c~~i~~~ 86 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAK--AVNCTTNDPKGRPCG--TCEMCRAIAEG 86 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCCCCCCc--cCHHHHHHhcC
Confidence 3445689999999999988887654 235678999999999999999987 332110000000000 01111111111
Q ss_pred hCCCCCcccc---cccCHHHHHHHHHHHh-----CCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 202 LMPSSRLSEI---MDKNYEMKKIILHEYL-----MTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 202 l~~~~~~~~~---~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.... ..+. .....++.. .+.+.+ .+++-++|+|++... +..+.|...+......+.+|++|.+
T Consensus 87 ~~~d--~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 87 SAVD--VIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred CCCe--EEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1100 0000 111222222 122222 245668999998643 5677777666655556777777655
No 153
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.98 E-value=0.0031 Score=68.05 Aligned_cols=99 Identities=12% Similarity=0.164 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeee--eeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC--HAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 226 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 226 (608)
..-+.|+|..|+|||+||+++++ ++...++. ++|++.. .+...+...+... .. ..+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~----~~~~~~~~~~~~~---------~~----~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE----KFTNDFVNALRNN---------TM----EEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH----HHHHHHHHHHHcC---------cH----HHHHHH
Confidence 45688999999999999999999 66665533 4455432 2333344443211 11 223333
Q ss_pred hCCCcEEEEEcCCCCH---h-HHHHHhhhcCC-CCCCcEEEEEccC
Q 039772 227 LMTKRYLIVIEDVWTI---G-VWDVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 227 L~~kr~LlVLDdv~~~---~-~~~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
++ +.-+|||||+... + .-+.+...+.. ...|..||+||..
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 43 3448899999643 1 11233332221 1235568888876
No 154
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.97 E-value=0.004 Score=71.27 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=38.3
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-..++||+.++++++..|..... .=+.++|.+|+|||++|+.+++
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~--~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKK--NNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCC--CceEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999977642 2356899999999999999998
No 155
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.97 E-value=0.0011 Score=69.70 Aligned_cols=62 Identities=13% Similarity=-0.032 Sum_probs=50.3
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY 190 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 190 (608)
..++++.+...+.+...|... +.|.++|++|+|||++|+++++.......|+.+.|+++++.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHps 235 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQS 235 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccc
Confidence 356888899999999998864 35778999999999999999984333456777889988876
No 156
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.0045 Score=68.44 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=41.1
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|.+..++.+.+.+..+. -..-+-++|+.|+||||+|+.+++
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999887764 244688999999999999999988
No 157
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.97 E-value=0.003 Score=67.04 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=41.4
Q ss_pred CCCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
...++.|.+..++++.+.+... -...+-+.++|.+|.|||++|+++++ +....|
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 3457899999999998877421 12345678999999999999999999 555554
No 158
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.95 E-value=0.0019 Score=66.16 Aligned_cols=36 Identities=8% Similarity=-0.026 Sum_probs=28.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEec
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPD 187 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 187 (608)
.-+.++|..|+|||+||.++++ .+...-..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH
Confidence 5699999999999999999999 55443334667764
No 159
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.95 E-value=0.0051 Score=70.41 Aligned_cols=142 Identities=14% Similarity=0.066 Sum_probs=75.9
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeee-eeeEecccchHHHHHHHHHH
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC-HAWIPDISYADQILDIVIKF 201 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~l~~~il~~ 201 (608)
....++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+.+.-...+.... -|=.|-| -+.|...
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s------C~~~~~g 84 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS------CVALAPG 84 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH------HHHHHcC
Confidence 345689999999999999988764 2356789999999999999999873211111100 0000100 0000000
Q ss_pred hCCCCCcccc---cccCHHHHHHHHHHH-----hCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccCchhh
Q 039772 202 LMPSSRLSEI---MDKNYEMKKIILHEY-----LMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQIEMV 271 (608)
Q Consensus 202 l~~~~~~~~~---~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~~v 271 (608)
-....++.++ ....+++..+ +++. ..+++-++|||++... +.++.|...+-.-...+.+|++|.++..+
T Consensus 85 ~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 85 GPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000000000 1112222222 2221 2345567889999755 56777777777655567777666552444
Q ss_pred h
Q 039772 272 T 272 (608)
Q Consensus 272 ~ 272 (608)
.
T Consensus 164 l 164 (824)
T PRK07764 164 I 164 (824)
T ss_pred h
Confidence 3
No 160
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.93 E-value=0.00028 Score=75.35 Aligned_cols=104 Identities=19% Similarity=0.166 Sum_probs=87.6
Q ss_pred HhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCc
Q 039772 481 KICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLR 560 (608)
Q Consensus 481 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~ 560 (608)
..+..+++|..|++.++.++.+...+..+.+|++|++++|.|..+.. + ..+..|+.|++++|.+..++. +..+.+|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l-~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-L-STLTLLKELNLSGNLISDISG-LESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-h-hhccchhhheeccCcchhccC-Cccchhhh
Confidence 44788999999999999999888778899999999999999999977 6 889999999999999888875 66699999
Q ss_pred EEEecCCCCCCcCCCC--CCCCcccceeecc
Q 039772 561 HLNFGSITLPAHPGKY--CGSLENLNFISAL 589 (608)
Q Consensus 561 ~L~l~~~~~~~~~lP~--i~~L~~L~~l~~~ 589 (608)
.+++++|. ...++. +..+..|..+.++
T Consensus 166 ~l~l~~n~--i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 166 LLDLSYNR--IVDIENDELSELISLEELDLG 194 (414)
T ss_pred cccCCcch--hhhhhhhhhhhccchHHHhcc
Confidence 99999965 444553 4667778777777
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.93 E-value=0.0025 Score=74.14 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=73.1
Q ss_pred CCCceechhhHHHHHHHHhcCC-------CCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHH
Q 039772 125 SRDTVGLDDRMEELLDLLIEGP-------PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILD 196 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~ 196 (608)
...++|.+..++.+...+.... ....++.++|+.|+|||++|+.+.. .....-...+.++.+.- .....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~~~- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKHSV- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccchH-
Confidence 3569999999999999886521 1245788999999999999999998 33222222334443332 11111
Q ss_pred HHHHHhCCCCCcccccccCHHHHHHHHHHHhCC-CcEEEEEcCCCCH--hHHHHHhhhcCCC----C-------CCcEEE
Q 039772 197 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIEDVWTI--GVWDVIREILPDN----H-------NRSRVL 262 (608)
Q Consensus 197 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~--~~~~~l~~~~~~~----~-------~gs~Ii 262 (608)
..+.+..+ .....+ + ...+.+.++. ...+|+||++... +.++.|...+..+ + ..+-||
T Consensus 641 ---~~l~g~~~--g~~g~~--~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 641 ---ARLIGAPP--GYVGYE--E-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred ---HHhcCCCC--CccCcc--c-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 11111110 001111 0 1122233322 3348999999854 5677776665432 1 234477
Q ss_pred EEccC
Q 039772 263 ITLTQ 267 (608)
Q Consensus 263 vTTR~ 267 (608)
+||..
T Consensus 713 ~TSn~ 717 (852)
T TIGR03346 713 MTSNL 717 (852)
T ss_pred EeCCc
Confidence 77766
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.92 E-value=0.0024 Score=74.08 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=37.9
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++||+++++++++.|...... -+.++|.+|+|||++|+.++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~--n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN--NPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC--CeEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999876422 345999999999999999988
No 163
>PRK06620 hypothetical protein; Validated
Probab=96.91 E-value=0.0034 Score=60.36 Aligned_cols=23 Identities=17% Similarity=-0.045 Sum_probs=21.0
Q ss_pred eEEEEEcCCCcchHHHHHHHhcC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
+.+-|+|++|+|||+||+++++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 66899999999999999998883
No 164
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.90 E-value=0.0076 Score=69.46 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=40.6
Q ss_pred CCceechhhHHHHHHHHhc----CCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 126 RDTVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
.+++|.+..+++|.+++.. +...-.++.++|++|+|||++|+.+++ .+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 4688999999999887642 222345799999999999999999999 555444
No 165
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.88 E-value=0.0088 Score=68.48 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=42.2
Q ss_pred CCCceechhhHHHHHHHHhcC----CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 125 SRDTVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
..+.+|.+..+++|.++|... .....++.++|++|+||||+|+.++. .....|
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~ 377 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY 377 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 457999999999999888631 22356899999999999999999998 444444
No 166
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.85 E-value=0.00078 Score=58.35 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|+|.|++|+||||+|+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 167
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.01 Score=61.04 Aligned_cols=125 Identities=12% Similarity=0.109 Sum_probs=77.2
Q ss_pred CceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce---------------------eeeeeeE
Q 039772 127 DTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY---------------------FDCHAWI 185 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---------------------F~~~~wv 185 (608)
.++|-+....++..+.........-+-++|+.|+||||+|.++.+ .+... .+.+..+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAK--ELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHH--HHhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 467778888888888875543344589999999999999999988 33311 1233334
Q ss_pred ecccc-----hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCC
Q 039772 186 PDISY-----ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDVIREILPDNHNR 258 (608)
Q Consensus 186 ~vs~~-----~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 258 (608)
.-+.. ..+..+++.+...... ..++.-++++|+++.. +.-+.+...+-.....
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~--------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESP--------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCC--------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 33332 1222222222222110 0256788999999765 4455666555555667
Q ss_pred cEEEEEccCchhhhc
Q 039772 259 SRVLITLTQIEMVTS 273 (608)
Q Consensus 259 s~IivTTR~~~~v~~ 273 (608)
+.+|++|..+..+..
T Consensus 140 ~~~il~~n~~~~il~ 154 (325)
T COG0470 140 TRFILITNDPSKILP 154 (325)
T ss_pred eEEEEEcCChhhccc
Confidence 888888887455554
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.84 E-value=0.0028 Score=70.14 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=41.6
Q ss_pred CCCCCCceechhhHHHHHHHHhcCC---CCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGP---PQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|-+..++++..++.... ...+++.|+|++|+||||+++.++.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4455789999999999999987642 2346899999999999999999998
No 169
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0069 Score=66.61 Aligned_cols=49 Identities=14% Similarity=0.052 Sum_probs=39.0
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+++
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3345678998888888888887653 246788899999999999999988
No 170
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.82 E-value=0.0061 Score=70.71 Aligned_cols=131 Identities=13% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCCceechhhHHHHHHHHhcC-------CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc--hHHHH
Q 039772 125 SRDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY--ADQIL 195 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~l~ 195 (608)
...++|-+..++.+.+.+... +.....+.++|+.|+|||+||+.++. .+-..-...+-++.+.- ...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccH-
Confidence 367999999999998887532 11234667899999999999999987 33211122223332221 1111
Q ss_pred HHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCc-EEEEEcCCCCH--hHHHHHhhhcCCC-----------CCCcEE
Q 039772 196 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKR-YLIVIEDVWTI--GVWDVIREILPDN-----------HNRSRV 261 (608)
Q Consensus 196 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~-----------~~gs~I 261 (608)
..-++.... ....+. ...+.+.++.++ .+|+||++... +.++.|...+..+ ...+-|
T Consensus 585 ---~~l~g~~~g---yvg~~~---~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 585 ---SKLIGSPPG---YVGYNE---GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred ---HHhcCCCCc---ccCcCc---cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence 111111100 011111 112344454454 58889999754 5667766665532 134556
Q ss_pred EEEccC
Q 039772 262 LITLTQ 267 (608)
Q Consensus 262 ivTTR~ 267 (608)
|+||..
T Consensus 656 I~Tsn~ 661 (821)
T CHL00095 656 IMTSNL 661 (821)
T ss_pred EEeCCc
Confidence 666665
No 171
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.82 E-value=0.008 Score=64.54 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=40.2
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|-+..++.+.+.+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3455689999999999999987654 235678899999999999998877
No 172
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.82 E-value=0.0036 Score=63.50 Aligned_cols=118 Identities=10% Similarity=0.128 Sum_probs=66.4
Q ss_pred echhhHHHHHHHHhcCC--CCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCC
Q 039772 130 GLDDRMEELLDLLIEGP--PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSR 207 (608)
Q Consensus 130 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~ 207 (608)
++....+...+++..-. ...+-+.++|..|+|||.||.++++ .....-..+.|++++ .++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~~----~l~~~lk~~~~~--- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHFP----EFIRELKNSISD--- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEHH----HHHHHHHHHHhc---
Confidence 45555555556665322 1345688999999999999999999 554433335666643 333444333321
Q ss_pred cccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHH--Hhhhc-CCC-CCCcEEEEEccC
Q 039772 208 LSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDV--IREIL-PDN-HNRSRVLITLTQ 267 (608)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~--l~~~~-~~~-~~gs~IivTTR~ 267 (608)
.+.... + +.+ .+-=||||||+... ..|.. +...+ ... ..+-.+|+||--
T Consensus 206 ------~~~~~~---l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 ------GSVKEK---I-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ------CcHHHH---H-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 111222 2 222 24568999999643 45542 43333 221 235568888877
No 173
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.81 E-value=0.0045 Score=65.93 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeee--eeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC--HAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 226 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 226 (608)
...+.|+|..|+|||+||+++++ ++....+. ++|++.. .+...+...+... ..+ .+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~~----~~~~~~~~~~~~~---------~~~----~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSSE----KFTNDFVNALRNN---------KME----EFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEHH----HHHHHHHHHHHcC---------CHH----HHHHH
Confidence 45688999999999999999999 66554432 4555532 2333444444211 112 22333
Q ss_pred hCCCcEEEEEcCCCCH---hHH-HHHhhhcCC-CCCCcEEEEEccC
Q 039772 227 LMTKRYLIVIEDVWTI---GVW-DVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 227 L~~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
+.+ .-+|||||+... +.+ +.+...+.. ...|..||+||..
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 332 337889999743 111 223322221 1235668888776
No 174
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.81 E-value=0.0041 Score=71.94 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=38.3
Q ss_pred CCCceechhhHHHHHHHHhcC-------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...++|-+..++.+.+.+... +....++.++|+.|+|||.+|++++.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999987531 22345789999999999999998877
No 175
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.80 E-value=0.0088 Score=59.46 Aligned_cols=111 Identities=11% Similarity=0.096 Sum_probs=74.2
Q ss_pred CCceech---hhHHHHHHHHhcCC-CCceEEEEEcCCCcchHHHHHHHhcCccccceee------eeeeEecccc--hHH
Q 039772 126 RDTVGLD---DRMEELLDLLIEGP-PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFD------CHAWIPDISY--ADQ 193 (608)
Q Consensus 126 ~~~vGr~---~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~------~~~wv~vs~~--~~~ 193 (608)
+.+||-. ..++++.++|..+. ...+-+.|||.+|+|||++++++... .-..++ .++.|..... ...
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~--hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL--HPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH--CCCCCCCCCccccEEEEecCCCCChHH
Confidence 4667744 34455556665543 34567999999999999999999863 111221 2445554333 999
Q ss_pred HHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC-CcEEEEEcCCCCH
Q 039772 194 ILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIEDVWTI 242 (608)
Q Consensus 194 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~ 242 (608)
+...|+.+++.... ...+.......+...++. +--+||+|.+.+.
T Consensus 112 ~Y~~IL~~lgaP~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 112 FYSAILEALGAPYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred HHHHHHHHhCcccC----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 99999999997653 344555555556666655 5568899999653
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.79 E-value=0.0035 Score=72.95 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=38.1
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-..++||+.++.+++..|..... .-+.++|.+|+|||++|+.++.
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHH
Confidence 35699999999999999987653 2345899999999999999988
No 177
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.014 Score=60.79 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=41.3
Q ss_pred CCCCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 120 SSSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 120 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+....+++|-+...+.+.+.+..+. -..-+-++|+.|+||+|+|..+.+
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 345556789999999999999888764 234688999999999999987776
No 178
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.78 E-value=0.0057 Score=65.67 Aligned_cols=101 Identities=15% Similarity=0.280 Sum_probs=58.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeee--eeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC--HAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 226 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 226 (608)
..-+.|+|..|.|||+|++++++ .+....+. +++++. .++...+...+... ......+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~~----~~f~~~~~~~l~~~-----------~~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMSG----DEFARKAVDILQKT-----------HKEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH----HHHHHHHHHHHHHh-----------hhHHHHHHHH
Confidence 34588999999999999999999 55443322 345543 34444444444310 0122334444
Q ss_pred hCCCcEEEEEcCCCCH---h-HHHHHhhhcCC-CCCCcEEEEEccC
Q 039772 227 LMTKRYLIVIEDVWTI---G-VWDVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 227 L~~kr~LlVLDdv~~~---~-~~~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
+. +.-+||+||+... + ..+.+...+.. ...|..||+|+..
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 44 3447889999643 1 22344443332 2335578888776
No 179
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0078 Score=62.68 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHh
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 227 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 227 (608)
....+.|||..|.|||.|++++.+ ....+.+....+.++.. .....+...+.. ......++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~se--~f~~~~v~a~~~-------------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTSE--DFTNDFVKALRD-------------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccHH--HHHHHHHHHHHh-------------hhHHHHHHhh
Confidence 467899999999999999999999 77777764333333322 222223333221 2233445554
Q ss_pred CCCcEEEEEcCCCCH---hHH-HHHhhhcCC-CCCCcEEEEEccC
Q 039772 228 MTKRYLIVIEDVWTI---GVW-DVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 228 ~~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
.-=++++||++-. +.| +.+...|+. ...|-.||+|++.
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 3347889999743 122 233333332 2234489999977
No 180
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.77 E-value=0.0055 Score=67.02 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=35.9
Q ss_pred CCCCCceechhhHHHHHHHHh---cC-------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 123 SKSRDTVGLDDRMEELLDLLI---EG-------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....+++|.+..++++.+.+. .. ....+=+.++|++|.|||++|+++++
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 345678998888777765543 11 12234588999999999999999998
No 181
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.0093 Score=66.13 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=40.3
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....++||-+..++.+.+.+..+. -.+.+-++|..|+||||+|+.+++
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999887763 235678999999999999998887
No 182
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.013 Score=63.65 Aligned_cols=49 Identities=14% Similarity=-0.005 Sum_probs=40.0
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|-+...+.+...+..+. -.+++-++|..|.||||+|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 3455689999999999999987664 345668999999999999998776
No 183
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.75 E-value=0.0045 Score=57.59 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEe
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIP 186 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 186 (608)
..+|.++|+.|.||||+|+.++. +....+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 46899999999999999999999 7766666666664
No 184
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.044 Score=56.88 Aligned_cols=86 Identities=21% Similarity=0.173 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCcccccee--eeeeeEecccc---hHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYF--DCHAWIPDISY---ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 223 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~---~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l 223 (608)
-.++.++|+.|+||||++.++.. +....+ ..+.+++.... ..+-++...+.++.... ...+..+....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~~~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQLAL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----ecCCcccHHHHH
Confidence 46999999999999999999988 443333 34566653332 44444444555543221 122222333333
Q ss_pred HHHhCCCcEEEEEcCCCCH
Q 039772 224 HEYLMTKRYLIVIEDVWTI 242 (608)
Q Consensus 224 ~~~L~~kr~LlVLDdv~~~ 242 (608)
..+.++ -+|++|..-..
T Consensus 211 -~~l~~~-DlVLIDTaG~~ 227 (374)
T PRK14722 211 -AELRNK-HMVLIDTIGMS 227 (374)
T ss_pred -HHhcCC-CEEEEcCCCCC
Confidence 334444 45668988543
No 185
>PRK06696 uridine kinase; Validated
Probab=96.74 E-value=0.0019 Score=62.73 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=34.8
Q ss_pred echhhHHHHHHHHhc-CCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 130 GLDDRMEELLDLLIE-GPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 130 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|.+.+++|.+.+.. ......+|+|.|.+|.||||||+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 366777888887765 344688999999999999999999998
No 186
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.74 E-value=0.0049 Score=59.89 Aligned_cols=49 Identities=18% Similarity=0.057 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecc
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDI 188 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 188 (608)
+-++|..+=..-.++.|+|.+|.|||++|.+++. .....-..++|++..
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e 60 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE 60 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC
Confidence 3344444433457999999999999999998887 444444668899876
No 187
>PRK07667 uridine kinase; Provisional
Probab=96.73 E-value=0.0024 Score=60.45 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=32.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.+.+.+.+........+|||.|.+|.||||+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677788877666678999999999999999999988
No 188
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.73 E-value=0.0037 Score=72.36 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=39.0
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.-..++||+.++.+++..|..... .-+.++|.+|+||||+|+.+++
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~--~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQ--NNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCc--CceeEECCCCCCHHHHHHHHHH
Confidence 446899999999999999987642 2345999999999999999998
No 189
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.0026 Score=62.80 Aligned_cols=74 Identities=19% Similarity=0.085 Sum_probs=45.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM 228 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 228 (608)
..=+.++|.+|+|||.||.++.+ ++...=-.+.|+++. ++.+++....... .....+.+.+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~~~~----el~~~Lk~~~~~~------------~~~~~l~~~l~ 166 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFITAP----DLLSKLKAAFDEG------------RLEEKLLRELK 166 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEEHH----HHHHHHHHHHhcC------------chHHHHHHHhh
Confidence 45688999999999999999999 565433346677653 3444444433320 11122222222
Q ss_pred CCcEEEEEcCCCC
Q 039772 229 TKRYLIVIEDVWT 241 (608)
Q Consensus 229 ~kr~LlVLDdv~~ 241 (608)
+-=||||||+-.
T Consensus 167 -~~dlLIiDDlG~ 178 (254)
T COG1484 167 -KVDLLIIDDIGY 178 (254)
T ss_pred -cCCEEEEecccC
Confidence 234889999965
No 190
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.73 E-value=0.0066 Score=57.40 Aligned_cols=53 Identities=19% Similarity=0.102 Sum_probs=35.3
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEe
Q 039772 130 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIP 186 (608)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 186 (608)
.+...-...++.|.. ..++.+.|++|.|||.||.+.+-+.-..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 445556666777773 46899999999999999988887544456788777764
No 191
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.72 E-value=0.012 Score=57.24 Aligned_cols=101 Identities=18% Similarity=0.066 Sum_probs=57.3
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee------eeeeeEecccc-hHHHHHHHHHHhCCCC----
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF------DCHAWIPDISY-ADQILDIVIKFLMPSS---- 206 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~-~~~l~~~il~~l~~~~---- 206 (608)
+-++|..+=..-.++.|+|.+|.|||+||.+++. .....- ..++|++.... ...-+.++........
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~--~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~ 85 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAV--EAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVL 85 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHH--HhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhh
Confidence 3344444433457999999999999999998876 332233 45788886554 2222333333322210
Q ss_pred -CcccccccCHHHHHHHHHHHhC----CCcEEEEEcCCC
Q 039772 207 -RLSEIMDKNYEMKKIILHEYLM----TKRYLIVIEDVW 240 (608)
Q Consensus 207 -~~~~~~~~~~~~~~~~l~~~L~----~kr~LlVLDdv~ 240 (608)
...-....+.++....+..... .+--|||+|.+.
T Consensus 86 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 86 DNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred ccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 0000123455666666665543 345589999985
No 192
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.0042 Score=66.48 Aligned_cols=99 Identities=9% Similarity=0.130 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM 228 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 228 (608)
..-+.|+|..|+|||+||+++++ .+......++|++. ..+...+...+... ..+.++..+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~~----~~f~~~~~~~l~~~-------------~~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRS----ELFTEHLVSAIRSG-------------EMQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEeeH----HHHHHHHHHHHhcc-------------hHHHHHHHcc
Confidence 35678999999999999999999 55443333555553 22333444443211 1123444443
Q ss_pred CCcEEEEEcCCCCHh----HHHHHhhhcCC-CCCCcEEEEEccC
Q 039772 229 TKRYLIVIEDVWTIG----VWDVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 229 ~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
+.-++++||+.... .-+.+...+.. ...|..||+||..
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 34478889986431 11223222221 1235678888865
No 193
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.69 E-value=0.0044 Score=56.11 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=59.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeee---Eecc-cc-hHHHHHHHHHHhCC---CC------CcccccccC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAW---IPDI-SY-ADQILDIVIKFLMP---SS------RLSEIMDKN 215 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w---v~vs-~~-~~~l~~~il~~l~~---~~------~~~~~~~~~ 215 (608)
.+|-|++..|-||||+|...+- +...+=-.+.+ +.-. .. ....++.+ ..+.. .. ..++.....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888899999999977766 33322112223 3322 11 33333332 00000 00 000000111
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEcCCCCH-----hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 216 YEMKKIILHEYLMT-KRYLIVIEDVWTI-----GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 216 ~~~~~~~l~~~L~~-kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.....+..++.+.. +-=|+|||.+-.. -..+.+...+.....+.-+|+|.|+
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~ 137 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN 137 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 22233445555544 4459999999644 2444555555555557789999999
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.67 E-value=0.0019 Score=66.04 Aligned_cols=46 Identities=13% Similarity=0.335 Sum_probs=40.3
Q ss_pred CceechhhHHHHHHHHhcC----CCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 127 DTVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
+++|.++.++++++++... +..-++++++|++|.||||||+++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999998653 234688999999999999999999983
No 195
>CHL00176 ftsH cell division protein; Validated
Probab=96.64 E-value=0.0059 Score=68.09 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=36.4
Q ss_pred CCCCCceechhhHHHHHHHH---hcCC-------CCceEEEEEcCCCcchHHHHHHHhc
Q 039772 123 SKSRDTVGLDDRMEELLDLL---IEGP-------PQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....+++|.++..+++.+.+ .... ...+-|.++|++|.|||+||+++++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34567899888877776654 2221 1244588999999999999999998
No 196
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.63 E-value=0.013 Score=53.12 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=29.0
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY 190 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 190 (608)
++.|+|.+|.||||+|..+.. .....-..++|++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcc
Confidence 468999999999999999988 44444445777776555
No 197
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.63 E-value=0.017 Score=63.63 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=41.0
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
|....+++|-+..++.+...+..+. -.+.+-++|..|+||||+|+.+++
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999998754 345688999999999999999988
No 198
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.63 E-value=0.0092 Score=53.20 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|.++|++|.||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 199
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.63 E-value=0.013 Score=58.39 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCCCcccccccCHHH-HHHHH
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSSRLSEIMDKNYEM-KKIIL 223 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~~~~~~~~~~~~-~~~~l 223 (608)
..+++.++|.+|+||||++..++. .....-..+.+++...- ..+-+....+..+..-- +.....+... ....+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~-~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI-KQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE-eCCCCCCHHHHHHHHH
Confidence 468999999999999999988887 44433234556654322 22222333333332100 0001122222 22334
Q ss_pred HHHhCCCcEEEEEcCCCC
Q 039772 224 HEYLMTKRYLIVIEDVWT 241 (608)
Q Consensus 224 ~~~L~~kr~LlVLDdv~~ 241 (608)
.....+..=+|++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 444444556788887743
No 200
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.59 E-value=0.049 Score=58.02 Aligned_cols=84 Identities=19% Similarity=0.050 Sum_probs=46.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCcccc--ceeeeeeeEecccc---hHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVK--HYFDCHAWIPDISY---ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 223 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l 223 (608)
-+++.++|++|+||||++..++. ... ..-..+.+++.... ...-+....+.++... ....+..+....+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~--~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~----~~~~~~~~l~~~l 294 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA--RYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV----EVVYDPKELAKAL 294 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce----EccCCHHhHHHHH
Confidence 36899999999999999888876 333 22234666765443 2222223333333221 1223344455555
Q ss_pred HHHhCCCcEEEEEcCCC
Q 039772 224 HEYLMTKRYLIVIEDVW 240 (608)
Q Consensus 224 ~~~L~~kr~LlVLDdv~ 240 (608)
.. +. ..=+|++|..-
T Consensus 295 ~~-~~-~~DlVlIDt~G 309 (424)
T PRK05703 295 EQ-LR-DCDVILIDTAG 309 (424)
T ss_pred HH-hC-CCCEEEEeCCC
Confidence 43 23 34678888663
No 201
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.58 E-value=0.047 Score=58.06 Aligned_cols=89 Identities=12% Similarity=-0.046 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEeccc--c-hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDIS--Y-ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 224 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 224 (608)
...+|.++|.+|+||||+|..++. .....-..+..++... . ..+.++.+...++...... ....+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~-~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGD-PDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEec-CCccCHHHHHHHHH
Confidence 468999999999999999999987 4443312344444322 2 4555566666655321100 01123333333333
Q ss_pred HHhCCCcEEEEEcCCC
Q 039772 225 EYLMTKRYLIVIEDVW 240 (608)
Q Consensus 225 ~~L~~kr~LlVLDdv~ 240 (608)
+.+.+. -+||+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 334444 568888874
No 202
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.018 Score=64.13 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=40.2
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|-+...+.+...+..+. -.+.+-++|..|+||||+|+.+..
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999987764 245688999999999999988777
No 203
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.017 Score=59.84 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=42.6
Q ss_pred CCCCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 120 SSSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 120 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+.....++|-+...+.+...+..+. -...+.|+|..|+||||+|..+.+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 445566789999999999999998764 345688999999999999998887
No 204
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.55 E-value=0.0041 Score=58.53 Aligned_cols=48 Identities=27% Similarity=0.241 Sum_probs=39.4
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+..-.++||-++.++++.-.-.+++ ++-+.|.||+|+||||-+..+++
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 3445689999999998877666664 77888999999999998888877
No 205
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.55 E-value=0.0018 Score=64.56 Aligned_cols=135 Identities=17% Similarity=0.108 Sum_probs=96.6
Q ss_pred CCcceEEEEEecccccccccc----cc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-----cCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLD----YY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-----QYP 503 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~----~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp 503 (608)
.+.++|.+..+.+........ .. .+.|..+.+..+.....--......|..+++|++|||.+|.++ .+-
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 356778787777766522211 12 5678888887776653221245567889999999999999976 355
Q ss_pred cccCCCCCccEEEecCCCCCc-----CChHHHhcCccCcEEeccccccc-----cchhHhcccccCcEEEecCCCC
Q 039772 504 SGIENLFLLRYLKLNIPSLKS-----LPSSLLSNLLNLYTLDMPFSYIE-----HTADEFWKMNKLRHLNFGSITL 569 (608)
Q Consensus 504 ~~i~~L~~Lr~L~l~~~~i~~-----LP~si~~~L~~L~~L~L~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~ 569 (608)
..++.+++||.|+++.|.++. +-..+-...++|++|.+.+|.+. .+-..+...+.|+.|++++|..
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 677888999999999987752 22222134689999999999654 4556788899999999999763
No 206
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.55 E-value=0.029 Score=51.35 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=68.7
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc------------------eeeeeeeEecccch
Q 039772 130 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH------------------YFDCHAWIPDISYA 191 (608)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------~F~~~~wv~vs~~~ 191 (608)
|-+...+.+.+.+..+. -...+-++|..|+||+|+|..+.+.---.. ..+...|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 34455666666665553 345688999999999999988876211111 1222333321110
Q ss_pred HHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC-----CCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEE
Q 039772 192 DQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM-----TKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLIT 264 (608)
Q Consensus 192 ~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivT 264 (608)
......++.. .+.+.+. +++-.+|+||++.. +..+.|...+-....++++|++
T Consensus 79 -------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 79 -------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp -------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred -------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 0022333333 3333332 35668899999754 6777887777666678999999
Q ss_pred ccCchhh
Q 039772 265 LTQIEMV 271 (608)
Q Consensus 265 TR~~~~v 271 (608)
|.++..+
T Consensus 139 t~~~~~i 145 (162)
T PF13177_consen 139 TNNPSKI 145 (162)
T ss_dssp ES-GGGS
T ss_pred ECChHHC
Confidence 9983333
No 207
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.024 Score=62.68 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=40.6
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|.+...+.+.+.+..+. -.+.+-++|..|.||||+|+.+..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455789999999999999988764 245677899999999999998876
No 208
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.52 E-value=0.015 Score=55.13 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=43.9
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccce-ee---eeeeEecccc--hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHY-FD---CHAWIPDISY--ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 224 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~---~~~wv~vs~~--~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 224 (608)
||||.|.+|+||||+|+.+.. .+... +. ....++...- ....... -...............+.+.+.+.|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999988 44422 22 1233332211 1111111 11111110000135667777777777
Q ss_pred HHhCCCcEEE
Q 039772 225 EYLMTKRYLI 234 (608)
Q Consensus 225 ~~L~~kr~Ll 234 (608)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7766666544
No 209
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.021 Score=63.66 Aligned_cols=49 Identities=20% Similarity=0.143 Sum_probs=40.3
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
....+++|.+...+.+..++..+. -.+-+-++|..|+||||+|+.+++.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH
Confidence 345689999999999999988764 2356789999999999999999883
No 210
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0022 Score=57.04 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccce-eeeeeeEe
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWIP 186 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~ 186 (608)
.--|+|.||+|+||||+++.+.+ .++.. |...-|++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 35689999999999999999998 55554 65544443
No 211
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.50 E-value=0.0058 Score=58.59 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=32.2
Q ss_pred CCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEeccc
Q 039772 147 PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDIS 189 (608)
Q Consensus 147 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 189 (608)
..-+++-|+|.+|.|||++|.++.. ........++|++...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC
Confidence 3457999999999999999988877 4444456788998753
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.036 Score=57.36 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEec
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPD 187 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 187 (608)
..++|+++|.+|+||||++..++. ....+=..+.+++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~--~L~~~GkkVglI~a 277 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITT 277 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH--HHHHcCCcEEEEec
Confidence 458999999999999999999987 34332223445554
No 213
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.49 E-value=0.01 Score=58.46 Aligned_cols=130 Identities=13% Similarity=0.168 Sum_probs=80.0
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeee-eeEecccc-hHHHHHHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCH-AWIPDISY-ADQILDIVI 199 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~-~wv~vs~~-~~~l~~~il 199 (608)
+....+++|-+..++-+.+.+... .......+|++|-|||+-|.+++..---.+.|+++ +=.++|.. -..+.+.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~-- 107 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE-- 107 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh--
Confidence 345568999999999999999883 47889999999999999998888732223456553 33455554 0000000
Q ss_pred HHhCCCCCcccccccCHHHHHHHHHHHh--CCCc-EEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 200 KFLMPSSRLSEIMDKNYEMKKIILHEYL--MTKR-YLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
...+...+........ ..++ -.||||+++.. +.|..+....-.....++.|..|..
T Consensus 108 ------------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 108 ------------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred ------------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 0000011100000000 0123 36889999865 7899998888776667777666655
No 214
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.47 E-value=0.0092 Score=57.64 Aligned_cols=51 Identities=22% Similarity=0.094 Sum_probs=34.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY 190 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 190 (608)
+-.+|..+=..-.++.|.|.+|+||||+|.+++. .....-..++|++....
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGL 58 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCC
Confidence 4444444323457899999999999999999887 44333345778865443
No 215
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.46 E-value=0.0091 Score=67.89 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=37.9
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-..++||+.+++++++.|..... .-+.++|.+|+|||++|+.+++
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988542 2245799999999999999987
No 216
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.44 E-value=0.017 Score=64.57 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=40.1
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
|....+++|-+..++.+...+..+. -.+.+-++|+.|+||||+|+.++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3445689999999999999997764 345677899999999999999987
No 217
>PRK06762 hypothetical protein; Provisional
Probab=96.44 E-value=0.015 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|.|.|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999998
No 218
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.01 Score=63.39 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=66.2
Q ss_pred CCCCceechhhHHHHHHHHhcC---C-------CCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHH
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG---P-------PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQ 193 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~---~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 193 (608)
...++-|.+..+.++.+++..- + ...+=|.++|++|+|||.||+++++ +..-- |+.++-+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vP-----f~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVP-----FLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCc-----eEeecch---
Confidence 4567899999999998887542 1 1345578999999999999999999 44433 3444322
Q ss_pred HHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 039772 194 ILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWT 241 (608)
Q Consensus 194 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 241 (608)
+|.+. ....+.+.+.+...+.-..-++++++|+++-
T Consensus 258 ---eivSG---------vSGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSG---------VSGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcc---------cCcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 22222 2344455555555666667899999999973
No 219
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.44 E-value=0.0065 Score=57.73 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=60.1
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT 229 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 229 (608)
.+|.|+|..|.||||++..+.. .+.......++.- ..++.-..... ..+-.+.. ...+.....+.++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~E~~~~~~-~~~i~q~~----vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPIEFVHESK-RSLINQRE----VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCccccccCc-cceeeecc----cCCCccCHHHHHHHHhcC
Confidence 4789999999999999998877 4444433333332 11110000000 00000000 011223455667777877
Q ss_pred CcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 230 KRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 230 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
..=.|++|.+.+.+.+..+..... .|..++.|+-.
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha 108 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAAE---TGHLVMSTLHT 108 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecC
Confidence 788999999988876655444332 35557666665
No 220
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0056 Score=57.95 Aligned_cols=79 Identities=14% Similarity=-0.046 Sum_probs=44.7
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHh
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 227 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 227 (608)
.+.+|||.|.+|.||||+|+.++. .+...+...+-.+.-. ...=.....+......+. ....+.+-..+.|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~~~~I~~D~YY-k~~~~~~~~~~~~~n~d~--p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEKVVVISLDDYY-KDQSHLPFEERNKINYDH--PEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCcceEeeccccc-cchhhcCHhhcCCcCccC--hhhhcHHHHHHHHHHHH
Confidence 468999999999999999999999 6654432221111000 000001111111111111 35566777777888888
Q ss_pred CCCc
Q 039772 228 MTKR 231 (608)
Q Consensus 228 ~~kr 231 (608)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 7777
No 221
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.36 E-value=0.0083 Score=56.77 Aligned_cols=54 Identities=22% Similarity=0.152 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMP 204 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~ 204 (608)
++||.++|+.|+||||.+.+++. +...+-..+..++.... ..+-++...+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhcc
Confidence 47899999999999998777776 34433333666664333 66666777777764
No 222
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.35 E-value=0.014 Score=67.05 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=39.7
Q ss_pred CCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 125 SRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
.+++.|.+..++++.+++... -...+-+.++|.+|.||||||+++++ .....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~ 239 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAY 239 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCe
Confidence 446889999999998876431 02245688999999999999999999 44433
No 223
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.34 E-value=0.022 Score=52.79 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++.++|++|.||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999887
No 224
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.33 E-value=0.018 Score=56.26 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=33.9
Q ss_pred HHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce----eeeeeeEecccc
Q 039772 141 LLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY----FDCHAWIPDISY 190 (608)
Q Consensus 141 ~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~ 190 (608)
+|..+=..-.++.|+|.+|.||||||.+++-....... -..++|++....
T Consensus 11 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 11 LLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred hccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence 33333234578999999999999999988752122221 356889986654
No 225
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.31 E-value=0.024 Score=61.77 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=90.8
Q ss_pred CCCCceechhhHHHHHHHHhcC---CCCceEEEEEcCCCcchHHHHHHHhcCcc---ccceeeeeeeEecccc----hHH
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFATEAYNSSY---VKHYFDCHAWIPDISY----ADQ 193 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F~~~~wv~vs~~----~~~ 193 (608)
.+..+=+|+.+..+|..++..- +..-+.+-|.|.+|.|||..+..|.+.-. -.+.-+...|+.+..- ..+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 5677889999999999998652 23345899999999999999999988421 1223344445555444 899
Q ss_pred HHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC-----CCcEEEEEcCCCCHh--HHHHHhhhcCC-CCCCcEEEEEc
Q 039772 194 ILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM-----TKRYLIVIEDVWTIG--VWDVIREILPD-NHNRSRVLITL 265 (608)
Q Consensus 194 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~--~~~~l~~~~~~-~~~gs~IivTT 265 (608)
+...|..++.+... ......+.+..+.. .+.++|++|+++..- .-+-+-..|.| ..++||++|.+
T Consensus 474 ~Y~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 99999999987543 33445555555554 356788888885431 11223334444 45688887764
No 226
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.30 E-value=0.011 Score=67.12 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=38.2
Q ss_pred CCCceechhhHHHHHHHHhcC-------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...++|-++.++.+.+.+... ......+.++|+.|+|||++|+.++.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999988632 12245788999999999999999988
No 227
>PTZ00301 uridine kinase; Provisional
Probab=96.29 E-value=0.0059 Score=58.37 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
..+|||.|.+|.||||||+.+.+ ++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~--~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS--ELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH--HHHhh
Confidence 47899999999999999999887 44333
No 228
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.02 Score=62.38 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=57.0
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccc-ceeeeeeeEecccc----hHHHHHHH
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWIPDISY----ADQILDIV 198 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~----~~~l~~~i 198 (608)
.+.+++--.+-.++..+.....--...-|-|.|..|+|||+||+++++ ... ++.-.+.+++.+.- ...+++
T Consensus 406 ~e~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~--~~~k~~~~hv~~v~Cs~l~~~~~e~iQk-- 481 (952)
T KOG0735|consen 406 FEHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFD--YYSKDLIAHVEIVSCSTLDGSSLEKIQK-- 481 (952)
T ss_pred CCCceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHH--HhccccceEEEEEechhccchhHHHHHH--
Confidence 344555544445555544433322345688999999999999999999 443 33333455554433 222222
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCC
Q 039772 199 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVW 240 (608)
Q Consensus 199 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 240 (608)
.+...+.+.+...+-+|||||++
T Consensus 482 -------------------~l~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 482 -------------------FLNNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred -------------------HHHHHHHHHHhhCCcEEEEcchh
Confidence 22233455666789999999996
No 229
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.27 E-value=0.0046 Score=66.59 Aligned_cols=47 Identities=13% Similarity=0.298 Sum_probs=40.4
Q ss_pred CCCceechhhHHHHHHHHhc----CCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+++|.++.+++|++.|.. -+..-+++.++|++|.||||||+.+.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 34789999999999999832 244568999999999999999999998
No 230
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.018 Score=62.81 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=44.0
Q ss_pred CCCceechhhHHHHHHHHhc----CCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 125 SRDTVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
..+-+|+++-+++|.+++-- ++.+-+++..+|++|+|||.+|+.++. .....|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence 56789999999999999853 334568999999999999999999998 555444
No 231
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.0041 Score=60.46 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=44.4
Q ss_pred CCCCCCceechhhHHHHHHHHhcC---CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
+..-.+|||-+.-++.+.=++... ++.+-.+.++|++|.||||||.-+++ ++...+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~ 80 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL 80 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe
Confidence 445578999999888887777643 34577899999999999999999999 555443
No 232
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.013 Score=65.68 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=72.1
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHH
Q 039772 126 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDI 197 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~ 197 (608)
..++|-+..+..+.+.+... +....+...+|+.|+|||-||++++. .+-+.=+..+-++-|+- -..-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCccceeechHHHHHHHHHHH
Confidence 57999999999999988642 23456788899999999999998877 22111123333444443 2222222
Q ss_pred HHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcE-EEEEcCCCCH--hHHHHHhhhcCC
Q 039772 198 VIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRY-LIVIEDVWTI--GVWDVIREILPD 254 (608)
Q Consensus 198 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~--~~~~~l~~~~~~ 254 (608)
++..-.+ --..++ ...|-+.+++++| .|.||.|... +.++-|...+.+
T Consensus 569 LIGaPPG--------YVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 569 LIGAPPG--------YVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HhCCCCC--------Cceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 2221111 111112 3345566777877 7778999754 677777777664
No 233
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.24 E-value=0.039 Score=53.92 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=60.5
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCC---------c
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSR---------L 208 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~---------~ 208 (608)
+-++|..+=..-+++.|+|.+|.||||||.++... .+. +=..++|++..+...++.+.+ ++++.... .
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~~~~~~~~~-~~~g~~~~~~~~~g~l~i 90 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENTSKSYLKQM-ESVKIDISDFFLWGYLRI 90 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCCHHHHHHHH-HHCCCChhHHHhCCCceE
Confidence 33444444344678999999999999999998552 222 234588888876655555553 23322110 0
Q ss_pred ----cc---ccccCHHHHHHHHHHHhCC-CcEEEEEcCCC
Q 039772 209 ----SE---IMDKNYEMKKIILHEYLMT-KRYLIVIEDVW 240 (608)
Q Consensus 209 ----~~---~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~ 240 (608)
++ ....+.+.....+.+.+.. +.-++|+|.+-
T Consensus 91 ~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 91 FPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred EeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00 0122346677777777754 55689999875
No 234
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.21 E-value=0.035 Score=52.58 Aligned_cols=104 Identities=6% Similarity=0.014 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHh
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 227 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 227 (608)
-++..|.|.+|.||||+++.+.. .+...=..++++.-+.. ...+.+. .+.. ..++..........-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~apT~~Aa~~L~~~----~~~~-------a~Ti~~~l~~~~~~~ 84 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGLAPTNKAAKELREK----TGIE-------AQTIHSFLYRIPNGD 84 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEEESSHHHHHHHHHH----HTS--------EEEHHHHTTEECCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEECCcHHHHHHHHHh----hCcc-------hhhHHHHHhcCCccc
Confidence 36888999999999999998877 44333122444444433 4444443 2110 011111100000000
Q ss_pred ------CCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 228 ------MTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 228 ------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
..++-+||+|++... ..+..+....+. .|+|+|..==.
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 233459999999765 467777766654 46788776433
No 235
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.20 E-value=0.027 Score=59.55 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=61.2
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCC
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTK 230 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k 230 (608)
++.|.|+=++||||+++.+.. ...+. .+++..-+. . .......+....+...-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~-~------------------~~~~~l~d~~~~~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDL-R------------------LDRIELLDLLRAYIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecch-h------------------cchhhHHHHHHHHHHhhccC
Confidence 999999999999999976666 33333 444432211 0 00000011111111111127
Q ss_pred cEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccCchhhh
Q 039772 231 RYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQIEMVT 272 (608)
Q Consensus 231 r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~v~ 272 (608)
+.+|+||.|.....|+.....+.+.++. +|++|+-+ ..+.
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgss-s~ll 134 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSS-SSLL 134 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCc-hhhh
Confidence 8899999999999999998888887766 89999888 4443
No 236
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.20 E-value=0.053 Score=55.78 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHhcCC-CCceEEEEEcCCCcchHHHHHHHhcCccccce----e---eeeeeEecccc--hHHHHHHHHHH
Q 039772 132 DDRMEELLDLLIEGP-PQLSVVAILDSIGLDKTAFATEAYNSSYVKHY----F---DCHAWIPDISY--ADQILDIVIKF 201 (608)
Q Consensus 132 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F---~~~~wv~vs~~--~~~l~~~il~~ 201 (608)
+.-.+.+.+.+...+ ....+|||.|.=|.||||+.+.+.+ .+... + ..-.|-..+.. ...++..|..+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE--ELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH--HHhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 445667778887754 5688999999999999999999988 44444 2 22344444423 66666666666
Q ss_pred hCC
Q 039772 202 LMP 204 (608)
Q Consensus 202 l~~ 204 (608)
+..
T Consensus 80 l~~ 82 (325)
T PF07693_consen 80 LEK 82 (325)
T ss_pred HHH
Confidence 644
No 237
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.19 E-value=0.002 Score=37.29 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=11.1
Q ss_pred cCcEEeccccccccchhHhcc
Q 039772 535 NLYTLDMPFSYIEHTADEFWK 555 (608)
Q Consensus 535 ~L~~L~L~~~~l~~lP~~i~~ 555 (608)
+|++|||++|++..+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355555555555555555443
No 238
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.19 E-value=0.03 Score=52.30 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=61.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEe---cccc-hHH------HHHHHHHHhCCCCCccc-ccccCHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIP---DISY-ADQ------ILDIVIKFLMPSSRLSE-IMDKNYEM 218 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~-~~~------l~~~il~~l~~~~~~~~-~~~~~~~~ 218 (608)
.+++|+|..|.|||||++.++.. . ....+.+++. +... ... ...++++.++....... ....+..+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 58999999999999999999983 2 2234444432 2211 111 11124444443211000 12222222
Q ss_pred -HHHHHHHHhCCCcEEEEEcCCCCH---hHHHHHhhhcCCC-CC-CcEEEEEccC
Q 039772 219 -KKIILHEYLMTKRYLIVIEDVWTI---GVWDVIREILPDN-HN-RSRVLITLTQ 267 (608)
Q Consensus 219 -~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~-~~-gs~IivTTR~ 267 (608)
..-.+-..+...+-+++||+.-.. +..+.+...+... .. |..||++|.+
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 223355566677888999997543 3333343333321 12 6778888887
No 239
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.001 Score=64.74 Aligned_cols=57 Identities=19% Similarity=0.051 Sum_probs=26.4
Q ss_pred CCCCccEEEecCC-CCC-cCChHHHhcCccCcEEeccccccccchh---HhcccccCcEEEecC
Q 039772 508 NLFLLRYLKLNIP-SLK-SLPSSLLSNLLNLYTLDMPFSYIEHTAD---EFWKMNKLRHLNFGS 566 (608)
Q Consensus 508 ~L~~Lr~L~l~~~-~i~-~LP~si~~~L~~L~~L~L~~~~l~~lP~---~i~~L~~L~~L~l~~ 566 (608)
..++|..|||+.| .++ .+-..+ -+++.|++|.++.|+.- .|+ .++..++|.+|+..+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEecc
Confidence 3455555555554 333 222233 45555555555555211 122 234445555555555
No 240
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.16 E-value=0.033 Score=52.01 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.6
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999988
No 241
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.14 E-value=0.0077 Score=53.57 Aligned_cols=105 Identities=18% Similarity=0.120 Sum_probs=60.5
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccc-cceeeeeeeEecccchHHHHHHHHHHhCCCCC
Q 039772 129 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYV-KHYFDCHAWIPDISYADQILDIVIKFLMPSSR 207 (608)
Q Consensus 129 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~ 207 (608)
||....++++.+.+..-...-.-|.|+|-.|.||+++|+.++....- ...| +.+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~-----~~~~------------------- 56 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPF-----IVID------------------- 56 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-C-----CCCC-------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCe-----EEec-------------------
Confidence 57777788887777653223455789999999999999999984221 1122 1110
Q ss_pred cccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHHHhhhcCC-CCCCcEEEEEccC
Q 039772 208 LSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
....+ .+.+.. -+.--++|+|+... +....+...+.. .....|+|.||+.
T Consensus 57 ---~~~~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 57 ---CASLP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ---HHCTC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ---hhhCc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 01111 111111 14455779999765 344445544442 2557899999988
No 242
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.12 E-value=0.018 Score=60.87 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
-..++|+|..|+|||||++.+++. ... +.++++-+++. +.++..+.+..-+... +.|.....-..
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~--~~~--d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARN--ADA--DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--cCC--CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 467899999999999999999983 222 34555556555 5555554444321111 10000000011
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
...-.+-+++ +++.+|+++||+-..
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1122234444 589999999999543
No 243
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.11 E-value=0.0077 Score=61.42 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=26.0
Q ss_pred CCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 147 PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 147 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
...+.++|||++|.|||.+|+++++ +..-.|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCCe
Confidence 3578999999999999999999999 554443
No 244
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.10 E-value=0.015 Score=55.70 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=50.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCCCc--ccccccC---------
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSSRL--SEIMDKN--------- 215 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~~--~~~~~~~--------- 215 (608)
..++|.|.+|.|||+|+..+.++. .. +..+++.+++. +.++.+++...-..+... .......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~--~~--d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ--DA--DVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC--TT--TEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc--cc--cceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 568999999999999999998843 22 22377777666 666666664431110000 0000111
Q ss_pred -HHHHHHHHHHHhCCCcEEEEEcCC
Q 039772 216 -YEMKKIILHEYLMTKRYLIVIEDV 239 (608)
Q Consensus 216 -~~~~~~~l~~~L~~kr~LlVLDdv 239 (608)
.-...++++. ++|.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 1122344444 789999999999
No 245
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.08 E-value=0.032 Score=55.53 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=25.2
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++..++..+ +-|-+.|.+|.|||++|+++++
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH
Confidence 344555555544 2456899999999999999997
No 246
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.08 E-value=0.016 Score=61.07 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
-..++|+|..|.|||||++.+.+. ... +.++++-+++. +.++.+.++..-.... +.|.....-..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~~~--dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--TTA--DVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--CCC--CEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 367999999999999999999872 222 45666656655 5666666544321111 00000000011
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
...-.+-+++ +++++|+++||+-..
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1122233444 589999999999543
No 247
>PRK10867 signal recognition particle protein; Provisional
Probab=96.08 E-value=0.13 Score=54.72 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999998877776
No 248
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.06 E-value=0.027 Score=56.61 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccce--eeeeeeEecccc---hHHHHHHHHHHhCCCCCcccccccCHHHHHHH
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHY--FDCHAWIPDISY---ADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 222 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~---~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~ 222 (608)
..++++|+|.+|+||||++..++. ..... -..+..++.... ...-+....+.++..-. ...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~--~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~ 266 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA--RFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKA 266 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHH
Confidence 357999999999999999988887 44322 124566665443 22233333333332211 22334444444
Q ss_pred HHHHhCCCcEEEEEcCC
Q 039772 223 LHEYLMTKRYLIVIEDV 239 (608)
Q Consensus 223 l~~~L~~kr~LlVLDdv 239 (608)
+.. +.+ .=+|++|..
T Consensus 267 l~~-~~~-~d~vliDt~ 281 (282)
T TIGR03499 267 LDR-LRD-KDLILIDTA 281 (282)
T ss_pred HHH-ccC-CCEEEEeCC
Confidence 443 333 347777754
No 249
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.074 Score=55.68 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccc----eeeeeeeEecccc---hHHHHHHHHHHhCCCCCcccccccCHHHHH
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKH----YFDCHAWIPDISY---ADQILDIVIKFLMPSSRLSEIMDKNYEMKK 220 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~~~~~~~~~~~~~~ 220 (608)
..++|.++|..|+||||.+..++. .... +-..+..++.... ...-++...+.++..- ....+.+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~--~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv----~~~~~~~~l~ 246 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA--IYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV----KAIESFKDLK 246 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce----EeeCcHHHHH
Confidence 357999999999999999988887 3321 1123556665443 3333555555554321 1233445555
Q ss_pred HHHHHHhCCCcEEEEEcCCCCH----hHHHHHhhhcC
Q 039772 221 IILHEYLMTKRYLIVIEDVWTI----GVWDVIREILP 253 (608)
Q Consensus 221 ~~l~~~L~~kr~LlVLDdv~~~----~~~~~l~~~~~ 253 (608)
..+.+. .+.-+|++|-.... ..+..+...+.
T Consensus 247 ~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 247 EEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 544443 44568888988533 23445554444
No 250
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.05 E-value=0.042 Score=51.19 Aligned_cols=114 Identities=8% Similarity=0.054 Sum_probs=56.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCC--CCC-ccc-------ccccCH-HH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMP--SSR-LSE-------IMDKNY-EM 218 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~--~~~-~~~-------~~~~~~-~~ 218 (608)
.+++|+|..|.|||||++.++.- .. .-.+.+++.-. .+......+-..+.. +.+ ... ....+. +.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~--~~-~~~G~i~~~g~-~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD--LK-PQQGEITLDGV-PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc--CC-CCCCEEEECCE-EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 58999999999999999999883 21 12233333211 111111111111111 000 000 011111 12
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCH---hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 219 KKIILHEYLMTKRYLIVIEDVWTI---GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 219 ~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
..-.+-..+..++-+++||..... ..-+.+...+.....|..||++|.+
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 156 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHH 156 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 223355556667788899998654 2222333322222236778888888
No 251
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.05 E-value=0.0019 Score=62.00 Aligned_cols=83 Identities=23% Similarity=0.186 Sum_probs=43.4
Q ss_pred hhccccceeEeecCCC--cCc-cCCcccCCCCCccEEEecCCCCC---cCChHHHhcCccCcEEeccccccccchh----
Q 039772 482 ICGMFKLLRVLDLGSL--VLI-QYPSGIENLFLLRYLKLNIPSLK---SLPSSLLSNLLNLYTLDMPFSYIEHTAD---- 551 (608)
Q Consensus 482 ~~~~~~~Lr~L~L~~~--~l~-~lp~~i~~L~~Lr~L~l~~~~i~---~LP~si~~~L~~L~~L~L~~~~l~~lP~---- 551 (608)
.|..+++|+.|.++.| .+. .++..+..+++|++|++++|.|+ .+++ . .++.||..|++.+|....+-+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l-~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-L-KELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-h-hhhcchhhhhcccCCccccccHHHH
Confidence 3455556666666666 222 44444445566666666666543 3333 3 455666666666663322211
Q ss_pred HhcccccCcEEEecC
Q 039772 552 EFWKMNKLRHLNFGS 566 (608)
Q Consensus 552 ~i~~L~~L~~L~l~~ 566 (608)
-+.-|++|.+|+-..
T Consensus 138 vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCD 152 (260)
T ss_pred HHHHhhhhccccccc
Confidence 234455666655544
No 252
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.04 E-value=0.017 Score=53.07 Aligned_cols=106 Identities=8% Similarity=0.043 Sum_probs=57.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc----hHHHHHHHHHHhCCCCCcccccccCHH-HHHHHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY----ADQILDIVIKFLMPSSRLSEIMDKNYE-MKKIILH 224 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~----~~~l~~~il~~l~~~~~~~~~~~~~~~-~~~~~l~ 224 (608)
.+++|+|..|.|||||.+.++.- . ....+.+++.-... .....+ ..+.. ....+.. ...-.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~------~~qLS~G~~qrl~la 94 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL--Y-KPDSGEILVDGKEVSFASPRDARR---AGIAM------VYQLSVGERQMVEIA 94 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCCeEEEECCEECCcCCHHHHHh---cCeEE------EEecCHHHHHHHHHH
Confidence 58999999999999999999883 2 23345555532111 111110 11110 0112222 2223355
Q ss_pred HHhCCCcEEEEEcCCCCH---hHHHHHhhhcCC-CCCCcEEEEEccC
Q 039772 225 EYLMTKRYLIVIEDVWTI---GVWDVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 225 ~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
..+..++-+++||+.-.. ...+.+...+.. ...|..||++|.+
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 556667788889997643 233333333322 1236678888888
No 253
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.93 E-value=0.03 Score=50.19 Aligned_cols=96 Identities=9% Similarity=0.079 Sum_probs=51.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCH-HHHHHHHHHHhC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNY-EMKKIILHEYLM 228 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~-~~~~~~l~~~L~ 228 (608)
.+++|+|..|.|||||++.+..-. ....+.+++.-... +.. ....+. +...-.+-..+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~~-----------i~~------~~~lS~G~~~rv~laral~ 86 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTVK-----------IGY------FEQLSGGEKMRLALAKLLL 86 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeEE-----------EEE------EccCCHHHHHHHHHHHHHh
Confidence 689999999999999999998832 12233333321000 000 000111 122223445555
Q ss_pred CCcEEEEEcCCCCH---hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 229 TKRYLIVIEDVWTI---GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 229 ~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.++-++++|+.-.. ...+.+...+... +..||++|.+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~ 126 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHD 126 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECC
Confidence 66678889987533 3333443333322 2468888877
No 254
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.90 E-value=0.021 Score=60.88 Aligned_cols=89 Identities=10% Similarity=0.137 Sum_probs=55.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCcccc-ceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
+.++|.|.+|+|||||+..+.+. .. .+-+.++|+-+++. +.++...+...=.... +.|.....-..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~--~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFN--ISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHH--HHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 57999999999999999888873 33 24567778777666 6667666655322111 10001111112
Q ss_pred HHHHHHHHHh---CCCcEEEEEcCCC
Q 039772 218 MKKIILHEYL---MTKRYLIVIEDVW 240 (608)
Q Consensus 218 ~~~~~l~~~L---~~kr~LlVLDdv~ 240 (608)
...-.+-+++ +++++|+++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 2233455555 3799999999994
No 255
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.89 E-value=0.1 Score=51.90 Aligned_cols=130 Identities=10% Similarity=0.000 Sum_probs=69.0
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHhCC--CCCcc-
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFLMP--SSRLS- 209 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l~~--~~~~~- 209 (608)
..+.++..|... .+..-++|+|..|.|||||.+.+.. .+... .+.+++.--+- ...-..++...... +....
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~--~~~~~-~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLAR--ILSTG-ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhC--ccCCC-CceEEECCEEeecchhHHHHHHHhcccccccccc
Confidence 344455555433 2357899999999999999999998 44432 23333321000 00011222222221 11100
Q ss_pred cccccCHHHHHHHHHHHhC-CCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccCchhh
Q 039772 210 EIMDKNYEMKKIILHEYLM-TKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQIEMV 271 (608)
Q Consensus 210 ~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~v 271 (608)
.....+.-....-+...+. ..+=++++|.+-..+.+..+...+. .|..||+||-+ ..+
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~-~~~ 231 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHG-RDV 231 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEech-hHH
Confidence 0011110111222333332 5788999999988877777766653 47789999987 443
No 256
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.88 E-value=0.0095 Score=58.04 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.6
Q ss_pred CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 146 PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 146 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.....++||.|..|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999998
No 257
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.88 E-value=0.0057 Score=53.29 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=19.1
Q ss_pred EEEEcCCCcchHHHHHHHhc
Q 039772 152 VAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~ 171 (608)
|+|.|+.|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999998
No 258
>PRK06547 hypothetical protein; Provisional
Probab=95.86 E-value=0.012 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|.|.+|.||||+|+.+..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987
No 259
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.033 Score=55.31 Aligned_cols=95 Identities=17% Similarity=-0.000 Sum_probs=56.5
Q ss_pred HHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHH----hCCCCCcccccccC
Q 039772 141 LLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKF----LMPSSRLSEIMDKN 215 (608)
Q Consensus 141 ~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~----l~~~~~~~~~~~~~ 215 (608)
+|..+=+.-+++=|+|+.|.||||+|.+++- .....-..++|++.-.. -.+-..++... +....+ .....
T Consensus 52 ~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~---~~~e~ 126 (279)
T COG0468 52 ALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQP---DTGEQ 126 (279)
T ss_pred HhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecC---CCHHH
Confidence 3434434568999999999999999988877 44444447899987665 33333334444 222221 12222
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCC
Q 039772 216 YEMKKIILHEYLMTKRYLIVIEDVW 240 (608)
Q Consensus 216 ~~~~~~~l~~~L~~kr~LlVLDdv~ 240 (608)
.....+.+......+--|||+|.|-
T Consensus 127 q~~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 127 QLEIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCc
Confidence 2233334444444446799999984
No 260
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.84 E-value=0.041 Score=55.99 Aligned_cols=98 Identities=21% Similarity=0.081 Sum_probs=57.5
Q ss_pred HHHHHh-cCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCC-cccccccC
Q 039772 138 LLDLLI-EGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSR-LSEIMDKN 215 (608)
Q Consensus 138 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~-~~~~~~~~ 215 (608)
+-.+|. .+=+.-+++-|+|.+|+||||||.+++. .....-..++|++...... ...++.++...+ .--....+
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~---~~~a~~lGvd~~~l~v~~p~~ 117 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALD---PVYAKKLGVDLDNLLISQPDT 117 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHH---HHHHHHcCCCHHHheecCCCC
Confidence 334444 3323457899999999999999988776 3434445578888655511 122333332110 00012334
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEcCCC
Q 039772 216 YEMKKIILHEYLMT-KRYLIVIEDVW 240 (608)
Q Consensus 216 ~~~~~~~l~~~L~~-kr~LlVLDdv~ 240 (608)
.++....+...++. .--+||+|-|-
T Consensus 118 ~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 118 GEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHHHHHHHhccCCCEEEEcchH
Confidence 56666666665543 56789999974
No 261
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.82 E-value=0.047 Score=58.98 Aligned_cols=48 Identities=25% Similarity=0.208 Sum_probs=34.5
Q ss_pred CCCCceechhhHHHHHHHHhc--------CCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIE--------GPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...++.|.+..++.+...... +-...+-|.++|++|.|||.+|+++++
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 345788887777666543211 112345688999999999999999999
No 262
>PRK08233 hypothetical protein; Provisional
Probab=95.81 E-value=0.0074 Score=56.34 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|.+|.||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999987
No 263
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.81 E-value=0.033 Score=54.95 Aligned_cols=93 Identities=15% Similarity=0.035 Sum_probs=56.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccc--cceeeeeeeEecccc---hHHHHHHHHHHhCCCCC--------cccccccCH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYV--KHYFDCHAWIPDISY---ADQILDIVIKFLMPSSR--------LSEIMDKNY 216 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~--------~~~~~~~~~ 216 (608)
+.++|.|-.|+|||||+..+.+...+ +.+-+.++|+-+++. ..++..++...=..... .+.....-.
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 56899999999999999998884321 123466888888777 77777766554221110 000000111
Q ss_pred HHHHHHHHHHh---CCCcEEEEEcCCCCH
Q 039772 217 EMKKIILHEYL---MTKRYLIVIEDVWTI 242 (608)
Q Consensus 217 ~~~~~~l~~~L---~~kr~LlVLDdv~~~ 242 (608)
....-.+-+++ .++++|+++||+-..
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 11223345555 268999999999443
No 264
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.81 E-value=0.22 Score=52.91 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999888877
No 265
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.80 E-value=0.042 Score=56.52 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=37.7
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|....+.++.+.+..-...-.-|.|+|-.|.||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999888865433334577999999999999999987
No 266
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.78 E-value=0.0078 Score=57.74 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|.|.+|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999998
No 267
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.78 E-value=0.034 Score=63.41 Aligned_cols=49 Identities=22% Similarity=0.189 Sum_probs=38.9
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
....++|....++++.+.+..-...-.-|-|+|..|.|||++|+.+++.
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 3457999999999988777643223346889999999999999999984
No 268
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.032 Score=54.31 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=65.4
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCc-----ccc------cee---eeeeeEec----ccc----h----------------
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSS-----YVK------HYF---DCHAWIPD----ISY----A---------------- 191 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~-----~~~------~~F---~~~~wv~v----s~~----~---------------- 191 (608)
.+++|+|+.|.|||||.+.+..-- ++. ..+ ..+.||.= ... +
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 689999999999999999998711 010 001 12344421 000 1
Q ss_pred ------HHHHHHHHHHhCCCCC-cccccccCHHHHH-HHHHHHhCCCcEEEEEcCCCCH------hHHHHHhhhcCCCCC
Q 039772 192 ------DQILDIVIKFLMPSSR-LSEIMDKNYEMKK-IILHEYLMTKRYLIVIEDVWTI------GVWDVIREILPDNHN 257 (608)
Q Consensus 192 ------~~l~~~il~~l~~~~~-~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~ 257 (608)
.+...+.++.++...- ...+...+-.+.+ -.|-+.|.++.=|++||.--.. ...-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 1344445555544210 0002333333333 3467778889999999975432 2333444444333
Q ss_pred CcEEEEEccC
Q 039772 258 RSRVLITLTQ 267 (608)
Q Consensus 258 gs~IivTTR~ 267 (608)
|+-||++|-+
T Consensus 189 g~tIl~vtHD 198 (254)
T COG1121 189 GKTVLMVTHD 198 (254)
T ss_pred CCEEEEEeCC
Confidence 8999999999
No 269
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.78 E-value=0.054 Score=53.02 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=39.8
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHH
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIV 198 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~i 198 (608)
+-++|..+=..-+++.|.|.+|.|||++|.++.. .....-+.++|++..+.+.++.+.+
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~lyvs~ee~~~~i~~~~ 68 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIYVALEEHPVQVRRNM 68 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEEeeCCHHHHHHHH
Confidence 3344544433467999999999999999987655 2223345688998766655555553
No 270
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.076 Score=54.73 Aligned_cols=123 Identities=8% Similarity=0.046 Sum_probs=68.7
Q ss_pred Ccee-chhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce-------------------eeeeeeEe
Q 039772 127 DTVG-LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY-------------------FDCHAWIP 186 (608)
Q Consensus 127 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~ 186 (608)
.++| -+..++.+.+.+..+. -.+..-++|+.|+||||+|+.+.+.--.... ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 5556667777665543 3466789999999999999888662110110 11111111
Q ss_pred cccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH----hCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcE
Q 039772 187 DISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY----LMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSR 260 (608)
Q Consensus 187 vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~ 260 (608)
... .....++..+.+... ..+.+-.+|+|++... +..+.|...+-.-.+++.
T Consensus 85 ~~~----------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~ 142 (329)
T PRK08058 85 PDG----------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTT 142 (329)
T ss_pred ccc----------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCce
Confidence 000 111222332222111 2244557889998654 456677777766566788
Q ss_pred EEEEccCchhhh
Q 039772 261 VLITLTQIEMVT 272 (608)
Q Consensus 261 IivTTR~~~~v~ 272 (608)
+|.+|.++..+.
T Consensus 143 ~Il~t~~~~~ll 154 (329)
T PRK08058 143 AILLTENKHQIL 154 (329)
T ss_pred EEEEeCChHhCc
Confidence 888887734443
No 271
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.75 E-value=0.021 Score=56.47 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce---e-eeeeeEecccc-hHHHHHHHHHHhCCCCCc-cc
Q 039772 137 ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY---F-DCHAWIPDISY-ADQILDIVIKFLMPSSRL-SE 210 (608)
Q Consensus 137 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F-~~~~wv~vs~~-~~~l~~~il~~l~~~~~~-~~ 210 (608)
.|-++|..+=..-.+.=|+|.+|+|||.|+-.++-...+... . ..++|++-... ..+-+.+|++....+.+. -+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~ 105 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILD 105 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhh
Confidence 344455443223468999999999999999877653333322 1 34889986665 333334556554321100 00
Q ss_pred ----ccccCHHHHHHHH---HHHh-CCCcEEEEEcCC
Q 039772 211 ----IMDKNYEMKKIIL---HEYL-MTKRYLIVIEDV 239 (608)
Q Consensus 211 ----~~~~~~~~~~~~l---~~~L-~~kr~LlVLDdv 239 (608)
....+.+++...+ ...+ ..+=-|||+|.+
T Consensus 106 ~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 106 NIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp TEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred ceeeeecCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence 1222333433333 2333 234458888887
No 272
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.05 Score=50.32 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHH-HHHHHHHhCC--CCCcccccc-------cCHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQI-LDIVIKFLMP--SSRLSEIMD-------KNYEM 218 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l-~~~il~~l~~--~~~~~~~~~-------~~~~~ 218 (608)
-.+++|+|..|.|||||.+.++.- .. ...+.+++.-.. +... .......+.. +.. .... .+..+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~--~~-~~~G~i~~~g~~-~~~~~~~~~~~~i~~~~~~~--~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL--YD-PTSGEILIDGVD-LRDLDLESLRKNIAYVPQDP--FLFSGTIRENILSGGQ 101 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC--CC-CCCCEEEECCEE-hhhcCHHHHHhhEEEEcCCc--hhccchHHHHhhCHHH
Confidence 358999999999999999999983 22 233444432111 0000 0000111110 110 0000 11111
Q ss_pred -HHHHHHHHhCCCcEEEEEcCCCCH---hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 219 -KKIILHEYLMTKRYLIVIEDVWTI---GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 219 -~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
..-.+...+..++-+++||+.... ...+.+...+.....+..||++|.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~ 154 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHR 154 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 122355556667789999998643 2233333333222235778888888
No 273
>PRK04296 thymidine kinase; Provisional
Probab=95.74 E-value=0.015 Score=54.85 Aligned_cols=111 Identities=10% Similarity=-0.112 Sum_probs=61.4
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT 229 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 229 (608)
.++.|+|..|.||||+|..+.. +...+-..++++.-+-+.+.....++++++.... ........+....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~--~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSRE--AIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEeccccccccCCcEecCCCCccc--ceEeCChHHHHHHHHh-hCC
Confidence 4678899999999999988887 4443333333332110111112234455542211 0112334555555555 334
Q ss_pred CcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 230 KRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 230 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
+.-+||+|.+.-. ++...+...+ ...|..||+|.++
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~ 115 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLD 115 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecC
Confidence 5568999998532 3333333332 2347889999999
No 274
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.74 E-value=0.008 Score=57.57 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 275
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.73 E-value=0.043 Score=55.74 Aligned_cols=98 Identities=18% Similarity=0.046 Sum_probs=57.9
Q ss_pred HHHHHh-cCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCc-ccccccC
Q 039772 138 LLDLLI-EGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRL-SEIMDKN 215 (608)
Q Consensus 138 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~-~~~~~~~ 215 (608)
+-.+|. .+=+.-+++-|+|.+|+||||||.++.. .....-..++|++..+.... ..++.++...+. --....+
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~---~~a~~lGvd~~~l~v~~p~~ 117 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDP---VYARKLGVDIDNLLVSQPDT 117 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHH---HHHHHcCCCHHHeEEecCCC
Confidence 334444 3323457999999999999999988777 34344345778876554111 133444332110 0022334
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEcCCC
Q 039772 216 YEMKKIILHEYLM-TKRYLIVIEDVW 240 (608)
Q Consensus 216 ~~~~~~~l~~~L~-~kr~LlVLDdv~ 240 (608)
.++....+...++ +..-+||+|-|-
T Consensus 118 ~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 118 GEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHHHHHHHhhccCCcEEEEcchh
Confidence 5666666665554 456799999984
No 276
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.73 E-value=0.018 Score=53.25 Aligned_cols=78 Identities=24% Similarity=0.211 Sum_probs=42.3
Q ss_pred ceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhc-CccCcEEeccccccccchh--HhcccccCcEEEe
Q 039772 488 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSN-LLNLYTLDMPFSYIEHTAD--EFWKMNKLRHLNF 564 (608)
Q Consensus 488 ~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~-L~~L~~L~L~~~~l~~lP~--~i~~L~~L~~L~l 564 (608)
....+||+++.+..++ .+..+..|..|.+.+|.|..+-+.+ .. +++|.+|.|.+|++++|-+ .+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L-~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDL-DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccch-hhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3445566666554333 2345556666666666666665545 33 3456666666665554433 3445556666655
Q ss_pred cCC
Q 039772 565 GSI 567 (608)
Q Consensus 565 ~~~ 567 (608)
-+|
T Consensus 121 l~N 123 (233)
T KOG1644|consen 121 LGN 123 (233)
T ss_pred cCC
Confidence 554
No 277
>PRK08149 ATP synthase SpaL; Validated
Probab=95.71 E-value=0.036 Score=58.51 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCC--------CCcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPS--------SRLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~--------~~~~~~~~~~~~ 217 (608)
-..++|+|..|.|||||+..+++.... +.+++..+... +.++..+.+...... .+.|........
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 357999999999999999999883221 23333334333 666666666543221 110100111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
.....+-+++ ++|++|+++||+-..
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 2222333444 589999999999543
No 278
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.69 E-value=0.034 Score=54.28 Aligned_cols=120 Identities=9% Similarity=-0.034 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccce-----eeeeeeEecccc-hHHHHHHHHHHhCCCCCccc--ccccCHHHH-
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHY-----FDCHAWIPDISY-ADQILDIVIKFLMPSSRLSE--IMDKNYEMK- 219 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~-~~~l~~~il~~l~~~~~~~~--~~~~~~~~~- 219 (608)
-.++|+||-.|+||||+|+.+.. -.... |++.-....+.. ..+-..+++...+.....-. ....+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~--L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG--LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc--CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 35899999999999999999998 33322 332222222333 55566677777665332100 122222222
Q ss_pred HHHHHHHhCCCcEEEEEcCCCCHh------HHHHHhhhcCCCCCCcEEEEEccCchhhh
Q 039772 220 KIILHEYLMTKRYLIVIEDVWTIG------VWDVIREILPDNHNRSRVLITLTQIEMVT 272 (608)
Q Consensus 220 ~~~l~~~L~~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~IivTTR~~~~v~ 272 (608)
.-.|.+.|.-+.-|||.|..-+.- +.-.+...+. ...|-..+..|-+ -.|+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHD-L~vv 173 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHD-LSVV 173 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEE-HHhh
Confidence 234677788899999999875441 1111222222 1225667777777 4443
No 279
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.68 E-value=0.0078 Score=46.35 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|+|.|..|.||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 280
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.66 E-value=0.1 Score=55.16 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999988876
No 281
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.64 E-value=0.034 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999998
No 282
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.03 Score=52.02 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=49.2
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccc-cceeeeeeeEe--cccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHh
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYV-KHYFDCHAWIP--DISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 227 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~--vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 227 (608)
.|.|.|.+|.||||+|+.+.+ +. -.|.+.-.|.. +.. ..++...+-..+....- .+.+-....+..++
T Consensus 2 riiilG~pGaGK~T~A~~La~--~~~i~hlstgd~~r~~~~~-~t~lg~~~k~~i~~g~l------v~d~i~~~~v~~rl 72 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAK--KLGLPHLDTGDILRAAIAE-RTELGEEIKKYIDKGEL------VPDEIVNGLVKERL 72 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HhCCcEEcHhHHhHhhhcc-CChHHHHHHHHHHcCCc------cchHHHHHHHHHHH
Confidence 478999999999999999999 32 12333212221 111 12222222222222111 11122223444444
Q ss_pred CC--CcEEEEEcCCCCH-hHHHHHhhhcCC
Q 039772 228 MT--KRYLIVIEDVWTI-GVWDVIREILPD 254 (608)
Q Consensus 228 ~~--kr~LlVLDdv~~~-~~~~~l~~~~~~ 254 (608)
.. .+.-+|+|+.-.. .+++.+...+..
T Consensus 73 ~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 73 DEADCKAGFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred HhhcccCeEEEeCCCCcHHHHHHHHHHHHH
Confidence 33 2227888888654 677777766554
No 283
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.62 E-value=0.097 Score=53.74 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+-+.++|+.|+||||+|+.++.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHH
Confidence 356688999999999999988877
No 284
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.59 E-value=0.046 Score=57.04 Aligned_cols=99 Identities=19% Similarity=0.092 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCccc-cccc
Q 039772 136 EELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSE-IMDK 214 (608)
Q Consensus 136 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~-~~~~ 214 (608)
.++-+.|..+=..-.++.|.|.+|+|||||+.+++. .....-..++|++..+...++.. -++.++...+... ....
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EEs~~qi~~-Ra~rlg~~~~~l~l~~e~ 145 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEESPEQIKL-RADRLGISTENLYLLAET 145 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCcCHHHHHH-HHHHcCCCcccEEEEccC
Confidence 344455544423346899999999999999998887 44444346778876444333322 2334443211000 1223
Q ss_pred CHHHHHHHHHHHhCCCcEEEEEcCCC
Q 039772 215 NYEMKKIILHEYLMTKRYLIVIEDVW 240 (608)
Q Consensus 215 ~~~~~~~~l~~~L~~kr~LlVLDdv~ 240 (608)
+.+.+.+.+. ..+.-+||+|.+.
T Consensus 146 ~le~I~~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 146 NLEDILASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred cHHHHHHHHH---hcCCcEEEEcchH
Confidence 3444444442 2366788999873
No 285
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.079 Score=53.47 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=43.0
Q ss_pred CCCCCceechhhHHHHHHHHhcC----C-------CCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEG----P-------PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
....++-|-++.+++|.+...-+ + ...+=|-.+|++|-|||-||++|+| +....|
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF 213 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF 213 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE
Confidence 34567889999999998886543 1 2355588999999999999999999 666555
No 286
>PRK03839 putative kinase; Provisional
Probab=95.58 E-value=0.0092 Score=55.71 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|.|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999
No 287
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.58 E-value=0.086 Score=50.28 Aligned_cols=118 Identities=11% Similarity=0.075 Sum_probs=73.9
Q ss_pred CCCCCceechhhHHHHHHHHhc--CCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHH
Q 039772 123 SKSRDTVGLDDRMEELLDLLIE--GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIK 200 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~ 200 (608)
.+-..++|.|...+.+++--.. ..-...-|..||.-|.|||.|++++.+ .+....-. -|.|++.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~---------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE---------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH----------
Confidence 4456799999988888764322 111234578999999999999999999 66655543 3344333
Q ss_pred HhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH---hHHHHHhhhcCC---CCCCcEEEEEccC
Q 039772 201 FLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI---GVWDVIREILPD---NHNRSRVLITLTQ 267 (608)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~---~~~gs~IivTTR~ 267 (608)
+..+...+...|+. ..+||.|..||..=. +.+..++..+.. ..|...++..|.+
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11112222222222 357999999999632 567888887764 3344555555655
No 288
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.58 E-value=0.02 Score=54.63 Aligned_cols=117 Identities=11% Similarity=0.048 Sum_probs=58.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHh-
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL- 227 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L- 227 (608)
.+++.|.|..|.||||+.+.+.... +.. ...+++........+...|...+...++... ...........+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la--~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~-~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMA--QIGCFVPAEYATLPIFNRLLSRLSNDDSMER-NLSTFASEMSETAYILD 104 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHH--HcCCCcchhhcCccChhheeEecCCccccch-hhhHHHHHHHHHHHHHH
Confidence 4789999999999999999887521 111 1122332222112333444444443221100 1111111111222222
Q ss_pred -CCCcEEEEEcCCCC---HhH----HHHHhhhcCCCCCCcEEEEEccCchhhh
Q 039772 228 -MTKRYLIVIEDVWT---IGV----WDVIREILPDNHNRSRVLITLTQIEMVT 272 (608)
Q Consensus 228 -~~kr~LlVLDdv~~---~~~----~~~l~~~~~~~~~gs~IivTTR~~~~v~ 272 (608)
..++-|+++|..-. ..+ ...+...+.. .|+.+|+||-+ ..++
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~-~~l~ 154 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHF-RDIA 154 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECCh-HHHH
Confidence 35678999999743 222 1223333332 37899999998 4443
No 289
>PRK09354 recA recombinase A; Provisional
Probab=95.57 E-value=0.058 Score=55.33 Aligned_cols=98 Identities=22% Similarity=0.086 Sum_probs=58.9
Q ss_pred HHHHHh-cCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCC-cccccccC
Q 039772 138 LLDLLI-EGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSR-LSEIMDKN 215 (608)
Q Consensus 138 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~-~~~~~~~~ 215 (608)
+-.+|. .+=+.-+++-|+|.+|.||||||.++.. .....-..++|++.-..+.. ..++.++...+ .--....+
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~---~~a~~lGvdld~lli~qp~~ 122 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDP---VYAKKLGVDIDNLLVSQPDT 122 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHH---HHHHHcCCCHHHeEEecCCC
Confidence 444454 3333457899999999999999988776 34344455888887665111 23344433210 00012334
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEcCCC
Q 039772 216 YEMKKIILHEYLMT-KRYLIVIEDVW 240 (608)
Q Consensus 216 ~~~~~~~l~~~L~~-kr~LlVLDdv~ 240 (608)
.++....+...++. +--+||+|-|-
T Consensus 123 ~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 123 GEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 56666666665543 56789999984
No 290
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.054 Score=53.75 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCcccc--ceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVK--HYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 226 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 226 (608)
-|+|.++|++|-|||+|.+++++.-.++ ..|....-+.++. .++..+..++ ...-+..+.+.|.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins--hsLFSKWFsE----------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS--HSLFSKWFSE----------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh--hHHHHHHHhh----------hhhHHHHHHHHHHHH
Confidence 4889999999999999999999954333 3444444444332 2222222222 223345666677777
Q ss_pred hCCCc--EEEEEcCCC
Q 039772 227 LMTKR--YLIVIEDVW 240 (608)
Q Consensus 227 L~~kr--~LlVLDdv~ 240 (608)
+.++. +++.+|.|.
T Consensus 245 v~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVE 260 (423)
T ss_pred HhCCCcEEEEEeHHHH
Confidence 76655 455678883
No 291
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.57 E-value=0.073 Score=49.40 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=57.1
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCc-cc--cce---ee--eeeeEecccchHHHHHHHHHHhCCCCC-cc-cccccCHHH-
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSS-YV--KHY---FD--CHAWIPDISYADQILDIVIKFLMPSSR-LS-EIMDKNYEM- 218 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~-~~--~~~---F~--~~~wv~vs~~~~~l~~~il~~l~~~~~-~~-~~~~~~~~~- 218 (608)
.+++|+|..|+|||||.+.+..+. .+ ... |. .+.|+ . + .+.+..++.... .. .....+..+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~----q--~~~l~~~~L~~~~~~~~~~~LSgGq~ 93 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--D----Q--LQFLIDVGLGYLTLGQKLSTLSGGEL 93 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--h----H--HHHHHHcCCCccccCCCcCcCCHHHH
Confidence 589999999999999999986421 11 111 10 12222 1 1 445555554211 00 012222222
Q ss_pred HHHHHHHHhCCC--cEEEEEcCCCCH---hHHHHHhhhcCC-CCCCcEEEEEccC
Q 039772 219 KKIILHEYLMTK--RYLIVIEDVWTI---GVWDVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 219 ~~~~l~~~L~~k--r~LlVLDdv~~~---~~~~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
..-.+...+..+ .-+++||..-.. ...+.+...+.. ...|..||++|.+
T Consensus 94 qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred HHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 222344455556 677888987543 333333333322 1236778888888
No 292
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0041 Score=35.94 Aligned_cols=21 Identities=52% Similarity=0.686 Sum_probs=14.2
Q ss_pred CccEEEecCCCCCcCChHHHhc
Q 039772 511 LLRYLKLNIPSLKSLPSSLLSN 532 (608)
Q Consensus 511 ~Lr~L~l~~~~i~~LP~si~~~ 532 (608)
+|++|++++|+++.+|+++ ++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~-~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF-SN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTT-TT
T ss_pred CccEEECCCCcCEeCChhh-cC
Confidence 4677777777777777765 54
No 293
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.55 E-value=0.061 Score=61.86 Aligned_cols=53 Identities=21% Similarity=0.129 Sum_probs=38.6
Q ss_pred CCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 125 SRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
-.++.|.+..++.+.+.+... -...+-+.++|++|.|||++|+++++ .....|
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f 515 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF 515 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE
Confidence 356788888888887766421 11234578899999999999999999 444433
No 294
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.54 E-value=0.049 Score=57.70 Aligned_cols=90 Identities=12% Similarity=0.155 Sum_probs=47.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEec--ccchHHHHHHHHHHhCC-------CCCcccccccCHHHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPD--ISYADQILDIVIKFLMP-------SSRLSEIMDKNYEMKK 220 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~l~~~il~~l~~-------~~~~~~~~~~~~~~~~ 220 (608)
..++|+|..|+|||||++.+... .. ...+++++.- ++++.++....+..... +.+.|.....-.....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l--~~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARA--DA-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC--CC-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 57999999999999999988873 22 2233444432 22244444444433311 1111110000111112
Q ss_pred HHHHHHh--CCCcEEEEEcCCCCH
Q 039772 221 IILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 221 ~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
-.+-+++ +++.+|+++||+-..
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHHH
Confidence 2233333 579999999999543
No 295
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.51 E-value=0.077 Score=54.43 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee----eeeeeEecccc-hHHHHHHHHHHhC
Q 039772 137 ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF----DCHAWIPDISY-ADQILDIVIKFLM 203 (608)
Q Consensus 137 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~-~~~l~~~il~~l~ 203 (608)
.+-++|..+=..-.++-|+|.+|+|||++|.+++-.......+ ..++|++.... ..+-+.++++.++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g 161 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcC
Confidence 3444454443346789999999999999998887632221111 36889987665 2222334444443
No 296
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.51 E-value=0.035 Score=57.97 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=39.6
Q ss_pred CCceechhhHHHHHHHHhcC------------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 126 RDTVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
..++|.++.+..+.-.+..+ +...+-|.++|++|+||||+|+++.. .+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence 46889988888887666542 11246788999999999999999998 555444
No 297
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.51 E-value=0.041 Score=58.48 Aligned_cols=90 Identities=10% Similarity=0.173 Sum_probs=53.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCcccccee-eeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYF-DCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
+.++|.|..|+|||||+..+... ..... +.++++-+++. +.++.++++..=.... +.|........
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 57999999999999999887663 22221 34666666666 6777777665422111 10000011111
Q ss_pred HHHHHHHHHh---CCCcEEEEEcCCCC
Q 039772 218 MKKIILHEYL---MTKRYLIVIEDVWT 241 (608)
Q Consensus 218 ~~~~~l~~~L---~~kr~LlVLDdv~~ 241 (608)
...-.+-+++ +++.+|+++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 2233355555 67999999999943
No 298
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.50 E-value=0.0091 Score=51.50 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=20.6
Q ss_pred EEEEcCCCcchHHHHHHHhcCccccceeeee
Q 039772 152 VAILDSIGLDKTAFATEAYNSSYVKHYFDCH 182 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~ 182 (608)
|-|+|.+|+||||+|+.++. .+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeEE
Confidence 67899999999999999999 777788643
No 299
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.084 Score=55.81 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=37.7
Q ss_pred CCCceechhh---HHHHHHHHhcCC-------CCceEEEEEcCCCcchHHHHHHHhcCccc
Q 039772 125 SRDTVGLDDR---MEELLDLLIEGP-------PQLSVVAILDSIGLDKTAFATEAYNSSYV 175 (608)
Q Consensus 125 ~~~~vGr~~~---~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 175 (608)
..++-|-|+. +++|+++|.++. .=.+=|.++|++|-|||-||++|+-.+.|
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 4567787765 456677777653 22455889999999999999999995443
No 300
>PRK04040 adenylate kinase; Provisional
Probab=95.47 E-value=0.013 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 301
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.049 Score=49.54 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=57.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCH-HHHHHHHHHHhC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNY-EMKKIILHEYLM 228 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~-~~~~~~l~~~L~ 228 (608)
.+++|+|..|.|||||++.+.. .+. ...+.+++.-..............+..- ...+. +...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g--~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~------~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAG--LLK-PTSGEILIDGKDIAKLPLEELRRRIGYV------PQLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCC-CCccEEEECCEEcccCCHHHHHhceEEE------eeCCHHHHHHHHHHHHHh
Confidence 6899999999999999999998 332 3455555542211000000111111110 00111 222333555566
Q ss_pred CCcEEEEEcCCCCH---hHHHHHhhhcCC-CCCCcEEEEEccC
Q 039772 229 TKRYLIVIEDVWTI---GVWDVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 229 ~kr~LlVLDdv~~~---~~~~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
...-+++||..-.. .....+...+.. ...|..||++|.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67788999998643 223333333321 1125678888877
No 302
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.44 E-value=0.072 Score=48.99 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=21.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhcC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999884
No 303
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.44 E-value=0.065 Score=55.17 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=34.9
Q ss_pred ceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 128 TVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 128 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
++|....++++.+.+..-...-.-|.|+|-.|.||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888887777654323345789999999999999999873
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.16 Score=52.58 Aligned_cols=99 Identities=11% Similarity=0.004 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 224 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 224 (608)
..+++.++|+.|+||||++..++. .....-..+.+++.... ..+-++...+.++... ....+..++...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~--~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv----~~~~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW--QLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL----IVATSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE----EecCCHHHHHHHHH
Confidence 368999999999999999988887 33322234666765433 3444444455444321 12345556655554
Q ss_pred HHh-CCCcEEEEEcCCCC----HhHHHHHhhhc
Q 039772 225 EYL-MTKRYLIVIEDVWT----IGVWDVIREIL 252 (608)
Q Consensus 225 ~~L-~~kr~LlVLDdv~~----~~~~~~l~~~~ 252 (608)
..- .+..=+|++|-.-. .+..+.+....
T Consensus 279 ~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred HHHhcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 432 13456788888754 23445554433
No 305
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.42 E-value=0.11 Score=52.11 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=81.8
Q ss_pred CCCCceechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhcC-ccccceeeeeeeEecccc-------hHH
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYNS-SYVKHYFDCHAWIPDISY-------ADQ 193 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~wv~vs~~-------~~~ 193 (608)
+-..++|-.++...+-.++... .++..-+.|+|+.|.|||+|...+..| +++.++|- -|..... +..
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l---~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFL---LVRLNGELQTDKIALKG 98 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEE---EEEECccchhhHHHHHH
Confidence 4467899999988888887642 112345778999999999988777765 34444542 2222222 555
Q ss_pred HHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC------CcEEEEEcCCCCH-------hHHHHHhhhcCCCCCCcE
Q 039772 194 ILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT------KRYLIVIEDVWTI-------GVWDVIREILPDNHNRSR 260 (608)
Q Consensus 194 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~------kr~LlVLDdv~~~-------~~~~~l~~~~~~~~~gs~ 260 (608)
+.+++..++.... ....+..+....+-..|+. -++..|+|..+-- --++-+...-....|-|-
T Consensus 99 I~rql~~e~~~~~----k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Pici 174 (408)
T KOG2228|consen 99 ITRQLALELNRIV----KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICI 174 (408)
T ss_pred HHHHHHHHHhhhh----eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEE
Confidence 5555555554322 1333344445555555532 3588899888632 122333333334567788
Q ss_pred EEEEccC
Q 039772 261 VLITLTQ 267 (608)
Q Consensus 261 IivTTR~ 267 (608)
|-+|||-
T Consensus 175 ig~Ttrl 181 (408)
T KOG2228|consen 175 IGVTTRL 181 (408)
T ss_pred EEeeccc
Confidence 8999998
No 306
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.15 Score=57.65 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-+|++++|+.|+||||.+.+++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999999888887
No 307
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.40 E-value=0.082 Score=51.46 Aligned_cols=48 Identities=6% Similarity=0.091 Sum_probs=31.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIV 198 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~i 198 (608)
-.++.|.|.+|.||||+|.++... -.... ..++|++......++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCCCHHHHHHHH
Confidence 469999999999999998655442 22222 3467777444455555554
No 308
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.39 E-value=0.07 Score=59.01 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=40.3
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.....++|....++++.+.+..-...-.-|-|+|..|.|||++|+.+++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 34568999999999999888654323345679999999999999999983
No 309
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.37 E-value=0.051 Score=57.35 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
-..++|+|..|+|||||++.+... .... .++ ++.+.+. +.++....+..-.... +.|.....-..
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~--~~~~-~gv-i~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN--TDAD-VVV-IALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCCC-EEE-EEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 357999999999999999999983 3322 222 2323332 5555555444322111 00000000011
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
...-.+-+++ +++++|+++||+-..
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1222244444 579999999999543
No 310
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.37 E-value=0.17 Score=50.64 Aligned_cols=53 Identities=11% Similarity=-0.083 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccce-eeeeeeEecccchHHHHHHHHHHhC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWIPDISYADQILDIVIKFLM 203 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~l~~~il~~l~ 203 (608)
-.++.|.|.+|+||||+|.+++. ..... =..++|++......++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~--~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYAL--DLITQHGVRVGTISLEEPVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH--HHHHhcCceEEEEEcccCHHHHHHHHHHHHh
Confidence 35788999999999999998877 33333 2457888876665556666655543
No 311
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.36 E-value=0.06 Score=53.17 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|.++|++|+||||+|+++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 377999999999999999987
No 312
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.35 E-value=0.018 Score=61.18 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=37.8
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++||++.++.+...+..+. -|-|.|.+|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 479999999999999888764 478999999999999999998
No 313
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.33 E-value=0.035 Score=60.74 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=47.7
Q ss_pred CCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc--hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 039772 147 PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY--ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 224 (608)
Q Consensus 147 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 224 (608)
+.-+|.-++|++|+||||||..+++.. .| .++=|..|.+ ...+-..|...+....
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s------------------ 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS------------------ 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc------------------
Confidence 356899999999999999999999832 12 1455666766 4444444444443211
Q ss_pred HHhC--CCcEEEEEcCCCCH
Q 039772 225 EYLM--TKRYLIVIEDVWTI 242 (608)
Q Consensus 225 ~~L~--~kr~LlVLDdv~~~ 242 (608)
.+. +++..+|+|.++-.
T Consensus 381 -~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 -VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred -ccccCCCcceEEEecccCC
Confidence 121 57788999999754
No 314
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.32 E-value=0.12 Score=46.38 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=19.4
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++.++|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 477899999999999999988
No 315
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.31 E-value=0.078 Score=54.02 Aligned_cols=89 Identities=10% Similarity=0.092 Sum_probs=48.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYEM 218 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~~ 218 (608)
..++|+|..|.|||||.+.+.+. ... +..++.-+... +.++....+..-.... +.+.....-...
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999999999983 322 22333333332 5555555554322111 100000001111
Q ss_pred HHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 219 KKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 219 ~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
..-.+-+++ ++|.+|+++||+-..
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccchHH
Confidence 122233333 589999999998543
No 316
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.31 E-value=0.026 Score=54.26 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998874
No 317
>PRK00625 shikimate kinase; Provisional
Probab=95.30 E-value=0.012 Score=54.34 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|.++||+|+||||+|+.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999988
No 318
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.27 E-value=0.099 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++.++|.+|+||||+|..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998886
No 319
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.26 E-value=0.015 Score=54.63 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 320
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.25 E-value=0.028 Score=49.29 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
+.+++.+.|...-..-.+|.+.|.-|.||||+++.++..
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 444454444432122358999999999999999999984
No 321
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.24 E-value=0.094 Score=57.55 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=41.1
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
....++|....++++.+.+..-...-.-|-|+|..|.|||++|+.+++.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999999988765434456889999999999999999983
No 322
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.22 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++++|..|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999987765
No 323
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.22 E-value=0.015 Score=52.38 Aligned_cols=35 Identities=14% Similarity=-0.104 Sum_probs=28.1
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEe
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIP 186 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 186 (608)
.||-|.|.+|.||||||+++.. ++...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 5788999999999999999999 6666555566665
No 324
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.21 E-value=0.074 Score=56.23 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCCCc--ccccccC--------
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSSRL--SEIMDKN-------- 215 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~~--~~~~~~~-------- 215 (608)
-..++|.|..|.|||||.+.+++. ... +.++++-+++. +.++....+..-+..... -.....+
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~--~~~--dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRS--AEV--DVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcC--CCC--CEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 467999999999999999999984 322 45667766666 555554433321111100 0001111
Q ss_pred --HHHHHHHHHHHhCCCcEEEEEcCCCCH
Q 039772 216 --YEMKKIILHEYLMTKRYLIVIEDVWTI 242 (608)
Q Consensus 216 --~~~~~~~l~~~L~~kr~LlVLDdv~~~ 242 (608)
.-..+++++. ++|++|+++||+-..
T Consensus 238 ~~a~tiAEyfrd--~G~~Vll~~DslTR~ 264 (439)
T PRK06936 238 FVATSIAEYFRD--QGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHH--cCCCEEEeccchhHH
Confidence 1112334443 589999999999543
No 325
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.18 E-value=0.027 Score=55.98 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=17.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.|.|+|.+|.||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999999988
No 326
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.18 E-value=0.012 Score=55.87 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|||.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 327
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.17 E-value=0.12 Score=52.81 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=38.0
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|-+..++.+.+.+..+. -.+..-++|..|+||+++|.++.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999987764 247889999999999999977765
No 328
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.16 E-value=0.017 Score=53.40 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...|.++|++|.||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999999
No 329
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.15 E-value=0.041 Score=54.73 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=42.2
Q ss_pred CCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHH
Q 039772 147 PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIK 200 (608)
Q Consensus 147 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~ 200 (608)
+.-+++.|+|.+|.|||++|.++.. +.......++||+..+....+.+...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCHHHHHHHHHH
Confidence 4468999999999999999988888 666678889999988886665555544
No 330
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.13 E-value=0.012 Score=56.73 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=40.7
Q ss_pred ccccceeEeecCCCcCccCCcccCCCCCccEEEecCC--CCC-cCChHHHhcCccCcEEeccccccc---cchhHhcccc
Q 039772 484 GMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIP--SLK-SLPSSLLSNLLNLYTLDMPFSYIE---HTADEFWKMN 557 (608)
Q Consensus 484 ~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~--~i~-~LP~si~~~L~~L~~L~L~~~~l~---~lP~~i~~L~ 557 (608)
..+..|..|++.++.++.+- .+..|++|++|.++.| .+. .++... -++++|++|++++|+++ +++. ..+|.
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~p-l~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRP-LKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccch-hhhhc
Confidence 33444444444444433221 2234556666666666 333 455545 55566666666666433 3332 44555
Q ss_pred cCcEEEecC
Q 039772 558 KLRHLNFGS 566 (608)
Q Consensus 558 ~L~~L~l~~ 566 (608)
+|..|++..
T Consensus 117 nL~~Ldl~n 125 (260)
T KOG2739|consen 117 NLKSLDLFN 125 (260)
T ss_pred chhhhhccc
Confidence 566666655
No 331
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.11 E-value=0.012 Score=56.73 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|||.|..|.||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 332
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.0085 Score=58.54 Aligned_cols=86 Identities=22% Similarity=0.118 Sum_probs=57.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCccc-CCCCCccEEEecCCCCC--cCChHHHhcCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGI-ENLFLLRYLKLNIPSLK--SLPSSLLSNLL 534 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i-~~L~~Lr~L~l~~~~i~--~LP~si~~~L~ 534 (608)
++.++.+.+.++.... + +.+..++..++.|++|+++.|++...-.++ -.+.+|+.|-|.|+.+. ...++. ..++
T Consensus 70 ~~~v~elDL~~N~iSd-W-seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD-W-SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DDLP 146 (418)
T ss_pred hhhhhhhhcccchhcc-H-HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hcch
Confidence 6677778777776641 1 234456678888888888888765333333 36678888888887553 555566 7777
Q ss_pred cCcEEecccccc
Q 039772 535 NLYTLDMPFSYI 546 (608)
Q Consensus 535 ~L~~L~L~~~~l 546 (608)
.++.|.++.|++
T Consensus 147 ~vtelHmS~N~~ 158 (418)
T KOG2982|consen 147 KVTELHMSDNSL 158 (418)
T ss_pred hhhhhhhccchh
Confidence 777787777743
No 333
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.07 E-value=0.04 Score=51.94 Aligned_cols=91 Identities=16% Similarity=0.047 Sum_probs=46.0
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCcccccee--------eeeeeEecccchHHHHHHHHHHhCCCCCccc-----------
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYF--------DCHAWIPDISYADQILDIVIKFLMPSSRLSE----------- 210 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~----------- 210 (608)
.+..|.|.+|+||||++..+.........| ..++|++.......+.+.+............
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 478899999999999998887732211122 2477887655533333333322221100000
Q ss_pred -------ccccCHHHHHHHHHHHhCC--CcEEEEEcCCC
Q 039772 211 -------IMDKNYEMKKIILHEYLMT--KRYLIVIEDVW 240 (608)
Q Consensus 211 -------~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~ 240 (608)
..........+.+.+.+.. +.-+||+|++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~ 151 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQ 151 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GG
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHH
Confidence 0001123445666666655 46799999664
No 334
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.07 E-value=0.045 Score=57.18 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=39.7
Q ss_pred CCceechhhHHHHHHHHhcC------------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 126 RDTVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
..++|.+..+..+..++... +...+-|.++|++|+||||+|+.+.. .+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChh
Confidence 46899999999988777541 11246789999999999999999998 444433
No 335
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.06 E-value=0.049 Score=57.69 Aligned_cols=92 Identities=10% Similarity=0.126 Sum_probs=56.1
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYEM 218 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~~ 218 (608)
+.++|.|.+|+|||+|+..+..... ..+-+.++|+-+++. ..++.+.+...=.... +.|.....-...
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 5799999999999999998877422 223366788877666 6667766655321111 000001111122
Q ss_pred HHHHHHHHh---CCCcEEEEEcCCCCH
Q 039772 219 KKIILHEYL---MTKRYLIVIEDVWTI 242 (608)
Q Consensus 219 ~~~~l~~~L---~~kr~LlVLDdv~~~ 242 (608)
..-.+-+++ +++++|+++||+-..
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHHH
Confidence 233455555 368999999999543
No 336
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.06 E-value=0.077 Score=56.05 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=47.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCC--------CCcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPS--------SRLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~--------~~~~~~~~~~~~ 217 (608)
-..++|+|..|.|||||++.+.+. ..... .++.-+++. ..++....+.+-+.. .+.|.....-..
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~--~~~~~--gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~ 212 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARN--AKADI--NVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAA 212 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CCCCe--EEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 468999999999999999998883 32222 222223333 444444433321111 010000001111
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCC
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWT 241 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~ 241 (608)
...-.+-+++ +++.+|+++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 213 FTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 1222334444 47999999999954
No 337
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.018 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|-||-|+||||||+.+.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~ 26 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE 26 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH
Confidence 46899999999999999999999
No 338
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.05 E-value=0.079 Score=55.91 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
-..++|+|..|.|||||++.+.+. ... +..++..+.+. +.++...+...=.... +.|.....-..
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~--~~~--~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARY--TEA--DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC--CCC--CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 357999999999999999999883 222 23334444443 5555555443311110 10000000011
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCC
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWT 241 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~ 241 (608)
...-.+-+++ +++++|+++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1122233333 58999999999944
No 339
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.03 E-value=0.16 Score=49.32 Aligned_cols=56 Identities=23% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHH
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQIL 195 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~ 195 (608)
+-++|..+=..-.++.|.|.+|.||||+|.++.. .....-..++|++......++.
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~--~~~~~g~~~~~is~e~~~~~i~ 64 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAY--KGLRDGDPVIYVTTEESRESII 64 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHH--HHHhcCCeEEEEEccCCHHHHH
Confidence 3334433323357899999999999999988765 2222334678888644444443
No 340
>PRK13947 shikimate kinase; Provisional
Probab=95.00 E-value=0.017 Score=53.36 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.5
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccc
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKH 177 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~ 177 (608)
-|.|+|++|+||||+|+.+.+ +..-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~--~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT--TLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC
Confidence 488999999999999999998 5543
No 341
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.23 Score=52.54 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=48.1
Q ss_pred CCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH
Q 039772 147 PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 226 (608)
Q Consensus 147 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 226 (608)
..+..+.+.|++|.|||+||..++. ...|+.+=-++ .. + ....++......++..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiS--pe----------------~---miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIIS--PE----------------D---MIGLSESAKCAHIKKI 590 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeC--hH----------------H---ccCccHHHHHHHHHHH
Confidence 4567788899999999999999987 34566433222 11 0 2334444555555555
Q ss_pred hC----CCcEEEEEcCCCCHhHHHH
Q 039772 227 LM----TKRYLIVIEDVWTIGVWDV 247 (608)
Q Consensus 227 L~----~kr~LlVLDdv~~~~~~~~ 247 (608)
.. ..=-.||+||+...-+|-.
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vp 615 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVP 615 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccc
Confidence 53 3456899999976544443
No 342
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.00 E-value=0.1 Score=50.25 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=19.2
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 343
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.99 E-value=0.1 Score=52.77 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=28.1
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHh
Q 039772 131 LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAY 170 (608)
Q Consensus 131 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 170 (608)
|..+-.--.++|..++ +..|.+.|.+|.|||-||-+..
T Consensus 229 rn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 229 RNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred ccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHH
Confidence 4444444456666665 8999999999999999886554
No 344
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.99 E-value=0.17 Score=45.50 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
||.|+|.+|.||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999988
No 345
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.99 E-value=0.14 Score=55.06 Aligned_cols=100 Identities=22% Similarity=0.110 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCccc-ccc
Q 039772 135 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSE-IMD 213 (608)
Q Consensus 135 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~-~~~ 213 (608)
+..+-+.|..+=..-.++.|.|.+|+|||||+.+++. .....-..++|++..+...++... ++.++...+... ...
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~--~~a~~g~~vlYvs~Ees~~qi~~r-a~rlg~~~~~l~~~~e 142 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAA--RLAAAGGKVLYVSGEESASQIKLR-AERLGLPSDNLYLLAE 142 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccccHHHHHHH-HHHcCCChhcEEEeCC
Confidence 3445555555433356899999999999999998887 343322357788765444443332 344443111000 122
Q ss_pred cCHHHHHHHHHHHhCCCcEEEEEcCCC
Q 039772 214 KNYEMKKIILHEYLMTKRYLIVIEDVW 240 (608)
Q Consensus 214 ~~~~~~~~~l~~~L~~kr~LlVLDdv~ 240 (608)
.+.+.+.+.+.+ .+.-+||+|.+.
T Consensus 143 ~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 143 TNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred CCHHHHHHHHHh---hCCCEEEEechh
Confidence 334444444432 356689999974
No 346
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.99 E-value=0.023 Score=52.70 Aligned_cols=81 Identities=21% Similarity=0.136 Sum_probs=36.1
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC--cccCCCCCccEEEecCCCCCcCCh----HHHh
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP--SGIENLFLLRYLKLNIPSLKSLPS----SLLS 531 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp--~~i~~L~~Lr~L~l~~~~i~~LP~----si~~ 531 (608)
++.|.+|.+..+... .+-+..-..+++|.+|.|.+|++.++- ..+..++.|+||.+-+|.+...+. -+ .
T Consensus 63 l~rL~tLll~nNrIt----~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl-~ 137 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRIT----RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL-Y 137 (233)
T ss_pred ccccceEEecCCcce----eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE-E
Confidence 445555555555443 222223333444555555555544321 223344455555555554433322 13 4
Q ss_pred cCccCcEEeccc
Q 039772 532 NLLNLYTLDMPF 543 (608)
Q Consensus 532 ~L~~L~~L~L~~ 543 (608)
++++|++||..+
T Consensus 138 klp~l~~LDF~k 149 (233)
T KOG1644|consen 138 KLPSLRTLDFQK 149 (233)
T ss_pred ecCcceEeehhh
Confidence 455555555543
No 347
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.98 E-value=0.098 Score=53.45 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+++++|++|+||||++..++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999999887
No 348
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.97 E-value=0.13 Score=52.55 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=35.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIK 200 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~ 200 (608)
..++|.|..|+|||+|++++.+.. +-+.++++-+++. ..+++.++-+
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~~ 207 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFPE 207 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHHh
Confidence 579999999999999999999942 2246778877766 6666666543
No 349
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.97 E-value=0.071 Score=56.39 Aligned_cols=89 Identities=11% Similarity=0.118 Sum_probs=49.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
-..++|+|..|.|||||++.+.+. .. .+..++..+++. +.++..+....=.... +.|.....-..
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~--~~--~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNA--PD--ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCC--CC--CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 458999999999999999999883 22 233445544444 5555555432110000 00000000111
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCC
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWT 241 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~ 241 (608)
...-.+-+++ +++++|+++||+-.
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 1122234444 57999999999954
No 350
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.96 E-value=0.14 Score=50.63 Aligned_cols=94 Identities=12% Similarity=0.004 Sum_probs=53.3
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCccccceeeee-eeEecccc---hHHHHHHHHHHhCCCCCc--ccccccC-------
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVKHYFDCH-AWIPDISY---ADQILDIVIKFLMPSSRL--SEIMDKN------- 215 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~---~~~l~~~il~~l~~~~~~--~~~~~~~------- 215 (608)
+.++|.|..|+|||+|| ..+.+ .. +-+.+ +++-+.+. ..++.+++.+.=...... -.....+
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~--~~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIIN--QK--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHH--hc--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 57899999999999996 66665 22 22344 56666665 666666666432111100 0001111
Q ss_pred ---HHHHHHHHHHHhCCCcEEEEEcCCCCH-hHHHHHh
Q 039772 216 ---YEMKKIILHEYLMTKRYLIVIEDVWTI-GVWDVIR 249 (608)
Q Consensus 216 ---~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~l~ 249 (608)
.-...++++. +++.+|||+||+-.. ..+.++.
T Consensus 146 ~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 146 PYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHHH
Confidence 1122334444 579999999999554 4455444
No 351
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.94 E-value=0.016 Score=54.26 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=20.0
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|+|.|.+|.||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998
No 352
>PF14516 AAA_35: AAA-like domain
Probab=94.94 E-value=0.19 Score=51.80 Aligned_cols=115 Identities=13% Similarity=0.110 Sum_probs=71.4
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc-eeeeeeeEeccc---c----hH-
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH-YFDCHAWIPDIS---Y----AD- 192 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~---~----~~- 192 (608)
+.+....|+|...-+++.+.|..++ ..+.|.|+-.+|||+|...+.+ .... .+. ++++++.. . ..
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~--~l~~~~~~-~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLE--RLQQQGYR-CVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHH--HHHHCCCE-EEEEEeecCCCcccCCHHH
Confidence 3455677899977778888777643 4899999999999999999988 4433 333 44665332 1 33
Q ss_pred ---HHHHHHHHHhCCCCCccc---ccccCHHHHHHHHHHHh---CCCcEEEEEcCCCCH
Q 039772 193 ---QILDIVIKFLMPSSRLSE---IMDKNYEMKKIILHEYL---MTKRYLIVIEDVWTI 242 (608)
Q Consensus 193 ---~l~~~il~~l~~~~~~~~---~~~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~ 242 (608)
.+...|.+++.......+ ....+.......+.+.+ .+++++|++|+|+..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 444555555544322111 01123334444555543 258999999999754
No 353
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.94 E-value=0.17 Score=49.55 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=18.4
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+-.|+|+||+||||||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999988876
No 354
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.93 E-value=0.018 Score=53.65 Aligned_cols=21 Identities=43% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|+|.|.+|.||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 355
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.90 E-value=0.02 Score=53.39 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++.|+|+.|+||||+|+.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 356
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.90 E-value=0.19 Score=54.57 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCcchHH-HHHHHhcCccccceeeeeeeEecccc----hHHHHHHHHHHhCCCCCc-
Q 039772 135 MEELLDLLIEGPPQLSVVAILDSIGLDKTA-FATEAYNSSYVKHYFDCHAWIPDISY----ADQILDIVIKFLMPSSRL- 208 (608)
Q Consensus 135 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~~----~~~l~~~il~~l~~~~~~- 208 (608)
.++|++.+... +||.|+|-.|.|||| ||+.+|.| .|...-.|-+.++ ...+.+.+.++++..-..
T Consensus 361 R~~ll~~ir~n----~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 361 RDQLLSVIREN----QVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHHhhC----cEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 34455555444 599999999999999 89999985 2322223444555 677777788777542210
Q ss_pred -----------cc---ccccCHH-HHHHHHHHHhCCCcEEEEEcCCCCH----hH-HHHHhhhcCCCCCCcEEEEEccC
Q 039772 209 -----------SE---IMDKNYE-MKKIILHEYLMTKRYLIVIEDVWTI----GV-WDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 209 -----------~~---~~~~~~~-~~~~~l~~~L~~kr~LlVLDdv~~~----~~-~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.+ +.-++.. -+.+-|.+..-.|=-.||+|...+. +. +.-++..+. ....-|+||||-.
T Consensus 432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVtSAT 509 (1042)
T KOG0924|consen 432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVTSAT 509 (1042)
T ss_pred cceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEeecc
Confidence 00 1111111 1222333333345568999998654 22 222222222 2336799999876
No 357
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.067 Score=57.60 Aligned_cols=84 Identities=15% Similarity=0.028 Sum_probs=44.8
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccce--eeeeeeEecccc---hHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHY--FDCHAWIPDISY---ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 223 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~---~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l 223 (608)
-.+|+|+|.+|+||||++..+.. ..... ...+..++.... ...-+....+.++..- ....+...+...+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa--~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v----~~a~d~~~L~~aL 423 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ--RFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV----HEADSAESLLDLL 423 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee----EecCcHHHHHHHH
Confidence 47999999999999999988877 33322 233555553222 2222222222222211 1122333444444
Q ss_pred HHHhCCCcEEEEEcCCC
Q 039772 224 HEYLMTKRYLIVIEDVW 240 (608)
Q Consensus 224 ~~~L~~kr~LlVLDdv~ 240 (608)
.. +. ..=+|++|..-
T Consensus 424 ~~-l~-~~DLVLIDTaG 438 (559)
T PRK12727 424 ER-LR-DYKLVLIDTAG 438 (559)
T ss_pred HH-hc-cCCEEEecCCC
Confidence 33 33 34578888875
No 358
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.87 E-value=0.077 Score=56.26 Aligned_cols=91 Identities=10% Similarity=0.161 Sum_probs=53.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccce-eeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
+.++|.|..|+|||||+..+... .... =..++++-+++. +.++.+++...=.... +.|.....-..
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 57999999999999999988763 3222 134667766666 6667776654311111 00000011111
Q ss_pred HHHHHHHHHh---CCCcEEEEEcCCCCH
Q 039772 218 MKKIILHEYL---MTKRYLIVIEDVWTI 242 (608)
Q Consensus 218 ~~~~~l~~~L---~~kr~LlVLDdv~~~ 242 (608)
...-.+-+++ +++.+|+++||+-..
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2233455666 468999999999543
No 359
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.87 E-value=0.066 Score=55.55 Aligned_cols=107 Identities=11% Similarity=0.078 Sum_probs=61.4
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT 229 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 229 (608)
..|.|.|..|.||||+.+.+.+ .+.......++.- ..++.-..... ..+..+.. ...+.......++..|+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~E~~~~~~-~~~i~q~e----vg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPIEYVHRNK-RSLINQRE----VGLDTLSFANALRAALRE 194 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCChhhhccCc-cceEEccc----cCCCCcCHHHHHHHhhcc
Confidence 6899999999999999999887 5554444444432 22211110000 00000000 011123456667888888
Q ss_pred CcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 230 KRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 230 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
..=.|++|.+.+.+.+....... ..|..++.|+-.
T Consensus 195 ~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha 229 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHT 229 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcC
Confidence 99999999999887766533332 235555555444
No 360
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.87 E-value=0.098 Score=55.82 Aligned_cols=93 Identities=12% Similarity=0.059 Sum_probs=55.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceee--eeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFD--CHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNY 216 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~ 216 (608)
+.++|.|..|+|||||+..+.+.......+. .++++-+++. +.++.+.+...=.... +.|.....-.
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 5689999999999999999988543322221 4666667666 6667666654322111 0000011111
Q ss_pred HHHHHHHHHHhC---CCcEEEEEcCCCCH
Q 039772 217 EMKKIILHEYLM---TKRYLIVIEDVWTI 242 (608)
Q Consensus 217 ~~~~~~l~~~L~---~kr~LlVLDdv~~~ 242 (608)
....-.+-++++ ++++|+++||+-..
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 122233555554 68999999999543
No 361
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.85 E-value=0.082 Score=48.50 Aligned_cols=116 Identities=13% Similarity=0.011 Sum_probs=61.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeee--eeeEeccc-c-hHHHHHHHHHHhCC---CCC--c----ccccccC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC--HAWIPDIS-Y-ADQILDIVIKFLMP---SSR--L----SEIMDKN 215 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~-~-~~~l~~~il~~l~~---~~~--~----~~~~~~~ 215 (608)
...|-|++..|-||||.|..+.-. .....+.. +-|+.-.. . ....+..+ .+.. ... . ++.....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 357888888999999999776652 12223333 12443221 1 22222222 1110 000 0 0001111
Q ss_pred HHHHHHHHHHHhCCCc-EEEEEcCCCCH-----hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 216 YEMKKIILHEYLMTKR-YLIVIEDVWTI-----GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 216 ~~~~~~~l~~~L~~kr-~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
..+..+..++.+...+ =|||||.+-.. -..+.+...+....++.-||+|-|+
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~ 139 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRG 139 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCC
Confidence 3334455666665544 59999999633 2334455555555567799999999
No 362
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.83 E-value=0.17 Score=52.46 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCcchHH-HHHHHhcCccc-cceeeeeeeEecccc---hHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTA-FATEAYNSSYV-KHYFDCHAWIPDISY---ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 223 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTt-LA~~v~~~~~~-~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l 223 (608)
-++|.+||+.|+|||| ||+..+. -. ...=..+..++...- ..+-++.-++-++.+- ....+..+....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar--~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~----~vv~~~~el~~ai 276 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR--YVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL----EVVYSPKELAEAI 276 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH--HHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce----EEecCHHHHHHHH
Confidence 6899999999999998 7766666 22 222244667765443 4444444444444332 2344455555544
Q ss_pred HHHhCCCcEEEEEcCCCCH----hHHHHHhhhcC
Q 039772 224 HEYLMTKRYLIVIEDVWTI----GVWDVIREILP 253 (608)
Q Consensus 224 ~~~L~~kr~LlVLDdv~~~----~~~~~l~~~~~ 253 (608)
.. +++. =+|..|=+... ....++...+.
T Consensus 277 ~~-l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~ 308 (407)
T COG1419 277 EA-LRDC-DVILVDTAGRSQYDKEKIEELKELID 308 (407)
T ss_pred HH-hhcC-CEEEEeCCCCCccCHHHHHHHHHHHh
Confidence 33 2333 34445655432 34444444444
No 363
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.83 E-value=0.1 Score=51.82 Aligned_cols=41 Identities=12% Similarity=-0.059 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY 190 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 190 (608)
.-+++.|.|.+|.||||+|.++.. .....=+.++|++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~--~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAV--TQASRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH--HHHhCCCcEEEEEecCC
Confidence 457899999999999999988755 22222345788886544
No 364
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.81 E-value=0.097 Score=59.03 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=35.1
Q ss_pred CCceechhhHHHHHHHHhc---CC-------CCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 126 RDTVGLDDRMEELLDLLIE---GP-------PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
.++.|.+...+++.+.+.. .. .-.+-|.++|.+|.||||+|+.+.+ +....|
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f 213 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF 213 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE
Confidence 4567877777666555432 10 1123488999999999999999998 444333
No 365
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.79 E-value=0.033 Score=60.42 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=27.7
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++.+........+|+|.|..|.||||||+.+..
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 4444554555688999999999999999999987
No 366
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.78 E-value=0.063 Score=59.92 Aligned_cols=74 Identities=11% Similarity=0.032 Sum_probs=52.6
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc-eeeeeeeEecccc-hHHHHHHHHHHh
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH-YFDCHAWIPDISY-ADQILDIVIKFL 202 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~-~~~l~~~il~~l 202 (608)
.++++|.++..+.+...+.... -+.++|++|+||||+|+.+.+ .+.. .|...+++..+.. ...++..++.++
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNPEDPNMPRIVEVPAGE 90 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCCCCCchHHHHHHHHhh
Confidence 3578899888888877776653 455999999999999999998 5554 3444555554444 556666666666
Q ss_pred CC
Q 039772 203 MP 204 (608)
Q Consensus 203 ~~ 204 (608)
+.
T Consensus 91 g~ 92 (608)
T TIGR00764 91 GR 92 (608)
T ss_pred ch
Confidence 54
No 367
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.78 E-value=0.22 Score=45.98 Aligned_cols=121 Identities=10% Similarity=0.084 Sum_probs=66.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccc------ee----------------eeeeeEe--------c-----------c
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKH------YF----------------DCHAWIP--------D-----------I 188 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~------~F----------------~~~~wv~--------v-----------s 188 (608)
.++.++|.+|.|||||.+.+|...+-.. .| -+++|-+ | +
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G 108 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG 108 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC
Confidence 5799999999999999999997432111 00 0112211 1 1
Q ss_pred cc---hHHHHHHHHHHhCCCCC---cccccccCHHHHHHHHHHHhCCCcEEEEEcCC----CCHhHHHHHhhhcCCCCCC
Q 039772 189 SY---ADQILDIVIKFLMPSSR---LSEIMDKNYEMKKIILHEYLMTKRYLIVIEDV----WTIGVWDVIREILPDNHNR 258 (608)
Q Consensus 189 ~~---~~~l~~~il~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv----~~~~~~~~l~~~~~~~~~g 258 (608)
.. +.+-..+.++..+.... .|. .-..-++..-.|.+.+-+++-+++=|.- +-.-.|+-+.-.-.-+..|
T Consensus 109 ~~~~~i~~rV~~~L~~VgL~~k~~~lP~-~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G 187 (223)
T COG2884 109 KPPREIRRRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187 (223)
T ss_pred CCHHHHHHHHHHHHHHhccchhhhcCcc-ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC
Confidence 11 33333333444433221 111 2222344445567777788888888853 3334555443222234568
Q ss_pred cEEEEEccCchhhh
Q 039772 259 SRVLITLTQIEMVT 272 (608)
Q Consensus 259 s~IivTTR~~~~v~ 272 (608)
..||+.|-+ .++.
T Consensus 188 tTVl~ATHd-~~lv 200 (223)
T COG2884 188 TTVLMATHD-LELV 200 (223)
T ss_pred cEEEEEecc-HHHH
Confidence 999999999 5544
No 368
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.77 E-value=0.013 Score=49.49 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.2
Q ss_pred EEEEcCCCcchHHHHHHHhc
Q 039772 152 VAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~ 171 (608)
|-|+|.+|+|||++|+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999888
No 369
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.77 E-value=0.34 Score=47.92 Aligned_cols=116 Identities=16% Similarity=0.069 Sum_probs=74.6
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc--hHHHHHHHHHH
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY--ADQILDIVIKF 201 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~l~~~il~~ 201 (608)
....|+|-.. ..++...+......-+.+.++|+.|+|||+-++.+++. .+....+..++. ...+...+...
T Consensus 70 ~~~~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 70 LAPDFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred ccccccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHH
Confidence 4456776443 33344444443333458889999999999999999982 223333445555 44555555555
Q ss_pred hCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHHHhhhc
Q 039772 202 LMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDVIREIL 252 (608)
Q Consensus 202 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~ 252 (608)
.... ...........+..++.+..-+|+.|..... +.++.+....
T Consensus 143 ~~~~------~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 143 AFGA------TDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred Hhcc------cchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 4442 3345667777888888899999999998765 5666665543
No 370
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.77 E-value=0.046 Score=53.09 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...++++.+.....+..+|||.|.||+|||||.-++..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 45566666666555688999999999999999988876
No 371
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.76 E-value=0.12 Score=55.25 Aligned_cols=90 Identities=10% Similarity=0.004 Sum_probs=50.4
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCcccc-----ceeeeeeeEecccc---hHHHHHHHHHHhC-CCCCc--------cc-
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVK-----HYFDCHAWIPDISY---ADQILDIVIKFLM-PSSRL--------SE- 210 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~-----~~F~~~~wv~vs~~---~~~l~~~il~~l~-~~~~~--------~~- 210 (608)
+.++|.|-.|+|||||| -.+.|...+. ++-..++|+-+++. +.++.+. +++-+ ..... |.
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~-L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRL-LRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHH-HHhcCCccceEEEEECCCCCHH
Confidence 56899999999999997 6666643221 23355788888877 4442222 22222 11100 00
Q ss_pred ---ccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH
Q 039772 211 ---IMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI 242 (608)
Q Consensus 211 ---~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~ 242 (608)
.....--...+.+++ +++.+|||+||+-..
T Consensus 269 ~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCEEEEEcCchHH
Confidence 000111122333443 579999999999644
No 372
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.74 E-value=0.17 Score=52.19 Aligned_cols=69 Identities=16% Similarity=0.029 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee----eeeeeEecccc-hHHHHHHHHHHhCC
Q 039772 136 EELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF----DCHAWIPDISY-ADQILDIVIKFLMP 204 (608)
Q Consensus 136 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~-~~~l~~~il~~l~~ 204 (608)
..+-++|..+=..-.++-|+|.+|+|||+||..++-........ ..++|++.... ..+-+.+|++.++.
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~ 183 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGL 183 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCC
Confidence 34445555543446788899999999999998777532222111 25889987776 22333455555543
No 373
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.71 E-value=0.12 Score=45.10 Aligned_cols=52 Identities=13% Similarity=-0.040 Sum_probs=32.8
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHh
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFL 202 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l 202 (608)
.+.|.|..|.|||+.+...............++|++-+.. .......+....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~ 54 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELF 54 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHh
Confidence 4678999999999988777763222223455677765554 444444444444
No 374
>PRK13949 shikimate kinase; Provisional
Probab=94.69 E-value=0.024 Score=52.38 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-|.|+|++|.||||+|+.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998
No 375
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.69 E-value=0.065 Score=57.85 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=49.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccce-eeeeeeEe-cccc---hHHHHHHHHHHhCCC-CCcccccccCHHHHHHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWIP-DISY---ADQILDIVIKFLMPS-SRLSEIMDKNYEMKKIIL 223 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~-vs~~---~~~l~~~il~~l~~~-~~~~~~~~~~~~~~~~~l 223 (608)
...+|+|.+|.|||||++.+.+ .+... =+..++|. |.+- +..+.+.+-.++-.. .+.+...........-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999 55432 23343444 4333 433333321111111 110000111122223334
Q ss_pred HHHh--CCCcEEEEEcCCCCH
Q 039772 224 HEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 224 ~~~L--~~kr~LlVLDdv~~~ 242 (608)
-+++ .++.+||++|++-..
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 4444 679999999999443
No 376
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.69 E-value=0.14 Score=54.42 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=49.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCCC--------cccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSSR--------LSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~--------~~~~~~~~~~ 217 (608)
-..++|+|..|.|||||++.+... .. .+.+++..+... ..++...+...-..... .+.....-..
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~--~~--~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRF--TE--ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC--CC--CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 357999999999999999999873 21 123334334443 55555555443222110 0000000011
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
...-.+-+++ +++++|+++||+-..
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 1122233444 589999999999543
No 377
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.69 E-value=0.15 Score=54.94 Aligned_cols=101 Identities=16% Similarity=0.039 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCc-cccc
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRL-SEIM 212 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~-~~~~ 212 (608)
-+..+-+.|..+=..-.++.|.|.+|+|||||+.++.. .....=..++|++..+...++... +..++...+. .-..
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~--~~a~~g~kvlYvs~EEs~~qi~~r-a~rlg~~~~~l~~~~ 155 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC--QLAKNQMKVLYVSGEESLQQIKMR-AIRLGLPEPNLYVLS 155 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEECcCCHHHHHHH-HHHcCCChHHeEEcC
Confidence 34555555555433457899999999999999988876 333322347788765443333221 2233321110 0012
Q ss_pred ccCHHHHHHHHHHHhCCCcEEEEEcCCC
Q 039772 213 DKNYEMKKIILHEYLMTKRYLIVIEDVW 240 (608)
Q Consensus 213 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 240 (608)
..+.+.+...+.+ .+.-++|+|.+.
T Consensus 156 e~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 156 ETNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred CCCHHHHHHHHHh---cCCcEEEEecch
Confidence 2344444444432 355689999874
No 378
>PRK06217 hypothetical protein; Validated
Probab=94.67 E-value=0.026 Score=52.89 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=20.3
Q ss_pred EEEEEcCCCcchHHHHHHHhcC
Q 039772 151 VVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.|.|.|++|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999983
No 379
>PRK05922 type III secretion system ATPase; Validated
Probab=94.66 E-value=0.14 Score=54.15 Aligned_cols=89 Identities=9% Similarity=0.093 Sum_probs=48.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCCCc--------ccccccCHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSSRL--------SEIMDKNYEM 218 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~~--------~~~~~~~~~~ 218 (608)
..++|+|..|+|||||.+.+.+. ... +...++-+++. ....+.+........... +.....-...
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~--~~~--d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKG--SKS--TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhcc--CCC--CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 56999999999999999999873 221 23333333333 445555544433222110 0000001111
Q ss_pred HHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 219 KKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 219 ~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
..-.+-+++ +++++|+++||+-..
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122344444 579999999999543
No 380
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.66 E-value=0.038 Score=53.48 Aligned_cols=115 Identities=13% Similarity=0.032 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHh
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 227 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 227 (608)
..+++.|.|..|.||||+.+.+... .-.+..-+||........+...++..++..+... ............+...+
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~---~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~-~~lS~~~~e~~~~a~il 104 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI---VLMAQIGCFVPCDSADIPIVDCILARVGASDSQL-KGVSTFMAEMLETAAIL 104 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH---HHHHHhCCCcCcccEEEeccceeEeeeccccchh-cCcChHHHHHHHHHHHH
Confidence 3579999999999999998887642 1111111233322221112222333333221100 01111222233333344
Q ss_pred --CCCcEEEEEcCC---CCHhHHH----HHhhhcCCCCCCcEEEEEccC
Q 039772 228 --MTKRYLIVIEDV---WTIGVWD----VIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 228 --~~kr~LlVLDdv---~~~~~~~----~l~~~~~~~~~gs~IivTTR~ 267 (608)
...+-|++||.. -+..+-. .+...+.. ..|+.+|+||-.
T Consensus 105 ~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~ 152 (222)
T cd03285 105 KSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHF 152 (222)
T ss_pred HhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEech
Confidence 457889999999 3332211 11122222 347889999987
No 381
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.65 E-value=0.022 Score=53.44 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=53.5
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC-
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT- 229 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~- 229 (608)
++.|.|..|.||||+.+.+.-.. +..+-. +++...........+++..+....... ....+.......+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G--~~v~a~~~~~~~~d~il~~~~~~d~~~-~~~s~fs~~~~~l~~~l~~~ 76 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIG--SFVPAESAELPVFDRIFTRIGASDSLA-QGLSTFMVEMKETANILKNA 76 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhC--CCeeehheEecccceEEEEeCCCCchh-ccccHHHHHHHHHHHHHHhC
Confidence 46799999999999999988421 111111 111111010011111111222111100 0111222333345555554
Q ss_pred -CcEEEEEcCCCCH---hH----HHHHhhhcCCCCCCcEEEEEccC
Q 039772 230 -KRYLIVIEDVWTI---GV----WDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 230 -kr~LlVLDdv~~~---~~----~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
++-|+++|..-.. .+ ...+...+.. ..|+.+|++|.+
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~ 121 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHY 121 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecH
Confidence 8899999998643 11 1222222222 137789999999
No 382
>PRK05439 pantothenate kinase; Provisional
Probab=94.65 E-value=0.04 Score=55.69 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 146 PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 146 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....-+|||.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999998887
No 383
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.64 E-value=0.024 Score=53.96 Aligned_cols=21 Identities=19% Similarity=-0.015 Sum_probs=19.9
Q ss_pred eEEEEEcCCCcchHHHHHHHh
Q 039772 150 SVVAILDSIGLDKTAFATEAY 170 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~ 170 (608)
+++.|.|..|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999987
No 384
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.63 E-value=0.033 Score=52.92 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|+|++|.||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999988
No 385
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.63 E-value=0.024 Score=53.21 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=51.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHH-HHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQI-LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM 228 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l-~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 228 (608)
..+.|+|..|.||||+++++.. .+...- ..+.+.-.... .+ ..... ++....+. ..........+.++..++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~--~i~~~~-~~i~ied~~E~-~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLA--FIPPDE-RIITIEDTAEL-QLPHPNWV-RLVTRPGN--VEGSGEVTMADLLRSALR 98 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--hcCCCC-CEEEECCcccc-CCCCCCEE-EEEEecCC--CCCCCccCHHHHHHHHhc
Confidence 5899999999999999999987 333221 22222111000 00 00000 00000000 011112334556667777
Q ss_pred CCcEEEEEcCCCCHhHHHHHhhh
Q 039772 229 TKRYLIVIEDVWTIGVWDVIREI 251 (608)
Q Consensus 229 ~kr~LlVLDdv~~~~~~~~l~~~ 251 (608)
..+=.++++.+.+.+.++.+...
T Consensus 99 ~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 99 MRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred cCCCEEEEEccCcHHHHHHHHHH
Confidence 78889999999998877755543
No 386
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.63 E-value=0.19 Score=51.25 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=41.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc----eeeeeeeEecccc--hHHHHHHHHHHhCC
Q 039772 137 ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH----YFDCHAWIPDISY--ADQILDIVIKFLMP 204 (608)
Q Consensus 137 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~--~~~l~~~il~~l~~ 204 (608)
.+-++|..+=..-+++-|+|.+|+|||+|+..++-...... .=..++|++.... +.++ .++++.++.
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi-~~~a~~~g~ 156 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRI-RAIAERFGV 156 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHH-HHHHHHcCC
Confidence 34445554433457899999999999999977664222221 1135889987665 4443 345565543
No 387
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.62 E-value=0.17 Score=51.80 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=40.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce----eeeeeeEecccc--hHHHHHHHHHHhC
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY----FDCHAWIPDISY--ADQILDIVIKFLM 203 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~--~~~l~~~il~~l~ 203 (608)
+-.+|..+=..-.++-|+|.+|+||||++.+++-....... =..++||+.... ..+ +.++++.++
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~r-l~~~~~~~g 154 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPER-IMQMAEARG 154 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 44445444334678999999999999999888763222111 126899987665 333 334444443
No 388
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.61 E-value=0.13 Score=56.14 Aligned_cols=103 Identities=13% Similarity=-0.032 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCc------
Q 039772 135 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRL------ 208 (608)
Q Consensus 135 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~------ 208 (608)
+..+-++|..+=..-.++.|.|.+|+||||||.++.. ....+=+.++|++..+...++.... +.++.....
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y~s~eEs~~~i~~~~-~~lg~~~~~~~~~g~ 325 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLE--NACANKERAILFAYEESRAQLLRNA-YSWGIDFEEMEQQGL 325 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCHHHHHHHH-HHcCCChHHHhhCCc
Confidence 3455555655534457899999999999999988877 4434445678887666655555553 444421100
Q ss_pred c-----cccccCHHHHHHHHHHHhCC-CcEEEEEcCCC
Q 039772 209 S-----EIMDKNYEMKKIILHEYLMT-KRYLIVIEDVW 240 (608)
Q Consensus 209 ~-----~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~ 240 (608)
- .....+.++....+.+.+.. +.-.+|+|.+.
T Consensus 326 l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 326 LKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0 01123346666667666654 45578888873
No 389
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.60 E-value=0.054 Score=60.35 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=58.5
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccc-ceeeeeeeEecccc-hHHHHHHHHHH
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWIPDISY-ADQILDIVIKF 201 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~-~~~l~~~il~~ 201 (608)
.-.+++|.++.++.+...+... +.+.++|.+|.||||+|+.+.+ .+. .+|+..+|...+.. ...+++.+..+
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~~~~~~np~~~~~~~~~~v~~~ 102 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQDILVYPNPEDPNNPKIRTVPAG 102 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHH--HcChHhHHHheEeeCCCcchHHHHHHHHHh
Confidence 3457899988888888777665 3688999999999999999998 443 24577888887666 88888888776
Q ss_pred hCC
Q 039772 202 LMP 204 (608)
Q Consensus 202 l~~ 204 (608)
++.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 654
No 390
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.60 E-value=0.031 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.043 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|.|+|++|.||||+|+++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 391
>PRK04328 hypothetical protein; Provisional
Probab=94.59 E-value=0.18 Score=49.66 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHH
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILD 196 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~ 196 (608)
+-++|..+=..-.++.|.|.+|.|||+||.++.. .....-+.++|++..+.+.++.+
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~--~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEEeeCCHHHHHH
Confidence 3344444323357899999999999999988665 22233456888887666444333
No 392
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.58 E-value=0.027 Score=52.47 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++|+|+|+.|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999998
No 393
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.58 E-value=0.028 Score=49.84 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|.|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 394
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.56 E-value=0.11 Score=55.41 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
-..++|.|..|.|||||++.+...
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999883
No 395
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.56 E-value=0.037 Score=52.95 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++||+|..|.||||||+.+.-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5799999999999999999986
No 396
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.52 E-value=0.027 Score=52.27 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++|.+.|++|.||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999988
No 397
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.49 E-value=0.069 Score=48.18 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=46.3
Q ss_pred EEcCCCcchHHHHHHHhcCccccceeeeeeeEecccch-------HHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH
Q 039772 154 ILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYA-------DQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 226 (608)
Q Consensus 154 I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-------~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 226 (608)
|+|++|+||||+|+.++. + | +...++++.-+ ..+...+-..+.... ..+.+-....+...
T Consensus 1 i~G~PgsGK~t~~~~la~--~----~-~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~------~vp~~~v~~ll~~~ 67 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK--R----Y-GLVHISVGDLLREEIKSDSELGKQIQEYLDNGE------LVPDELVIELLKER 67 (151)
T ss_dssp EEESTTSSHHHHHHHHHH--H----H-TSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTS------S--HHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHH--h----c-CcceechHHHHHHHHhhhhHHHHHHHHHHHhhc------cchHHHHHHHHHHH
Confidence 689999999999999998 3 2 23345443321 112233333332222 12234455556666
Q ss_pred hCC--CcEEEEEcCCCCH-hHHHHHhh
Q 039772 227 LMT--KRYLIVIEDVWTI-GVWDVIRE 250 (608)
Q Consensus 227 L~~--kr~LlVLDdv~~~-~~~~~l~~ 250 (608)
+.. ...-+|||+.-.. ++.+.+..
T Consensus 68 l~~~~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 68 LEQPPCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp HHSGGTTTEEEEESB-SSHHHHHHHHH
T ss_pred HhhhcccceeeeeeccccHHHHHHHHH
Confidence 643 2455789998544 56666655
No 398
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.49 E-value=0.12 Score=54.72 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
-..++|+|..|+|||||++.+...
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 358999999999999999999973
No 399
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.48 E-value=0.049 Score=50.99 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEe
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIP 186 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 186 (608)
.++|.|+|+.|+|||||++.+.. .....|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 47899999999999999999999 6777786555554
No 400
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.48 E-value=0.24 Score=45.27 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=18.5
Q ss_pred EEEEcCCCcchHHHHHHHhc
Q 039772 152 VAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~ 171 (608)
|.|+|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998
No 401
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.081 Score=56.87 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=66.6
Q ss_pred CceechhhHHHHHHHHhcCC-----------CCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHH
Q 039772 127 DTVGLDDRMEELLDLLIEGP-----------PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQIL 195 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~ 195 (608)
++-|.++-..++...+..+- .-..=|..||++|+|||-||++|+| +-.-.| ++|-.+
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----- 579 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----- 579 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH-----
Confidence 44455666666655554431 1234477899999999999999999 666565 333322
Q ss_pred HHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH-------------hHHHHHhhhcCCC--CCCcE
Q 039772 196 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI-------------GVWDVIREILPDN--HNRSR 260 (608)
Q Consensus 196 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~--~~gs~ 260 (608)
+++... ...+.-...+...+.=...++.|.+|.++.. ...++|...+... ..|--
T Consensus 580 -ELlNkY---------VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~ 649 (802)
T KOG0733|consen 580 -ELLNKY---------VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVY 649 (802)
T ss_pred -HHHHHH---------hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceE
Confidence 111111 1112222233333333457899999999632 2455565555532 34555
Q ss_pred EEEEccC
Q 039772 261 VLITLTQ 267 (608)
Q Consensus 261 IivTTR~ 267 (608)
||-.|..
T Consensus 650 viaATNR 656 (802)
T KOG0733|consen 650 VIAATNR 656 (802)
T ss_pred EEeecCC
Confidence 5555555
No 402
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.46 E-value=0.18 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|.|..|.|||||.+.+..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 403
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=94.45 E-value=0.13 Score=55.11 Aligned_cols=89 Identities=13% Similarity=-0.014 Sum_probs=53.1
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCccccceeee-eeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCH
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNY 216 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~ 216 (608)
+.++|.|..|+|||||| ..+.+. . .-+. ++++-+++. +.++.+.+...=.... +.|.....-.
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q--~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~a 238 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQ--K--GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIA 238 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHh--c--CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHH
Confidence 56899999999999997 577773 2 2344 677777777 6667666665422111 0000000001
Q ss_pred HHHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 217 EMKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 217 ~~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
......+-+++ +++.+|||+||+-..
T Consensus 239 p~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 239 PYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 11122244444 579999999999644
No 404
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.45 E-value=0.023 Score=30.52 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=6.7
Q ss_pred cCcEEeccccccccch
Q 039772 535 NLYTLDMPFSYIEHTA 550 (608)
Q Consensus 535 ~L~~L~L~~~~l~~lP 550 (608)
+|++|+|++|++.++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555554
No 405
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.45 E-value=0.14 Score=47.83 Aligned_cols=117 Identities=14% Similarity=0.016 Sum_probs=62.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccc-eeee--eeeEecc-cc-hHHHHHHH--HHHhCCCCC--c----ccccccC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKH-YFDC--HAWIPDI-SY-ADQILDIV--IKFLMPSSR--L----SEIMDKN 215 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~--~~wv~vs-~~-~~~l~~~i--l~~l~~~~~--~----~~~~~~~ 215 (608)
-..|-|+|..|-||||.|..+.- +... .+.+ +-|+.-. .. ....++.+ +.......+ . ++.....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46889999999999999977766 3322 2332 2233322 11 22333221 000000000 0 0001112
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEcCCCCH-----hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 216 YEMKKIILHEYLMT-KRYLIVIEDVWTI-----GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 216 ~~~~~~~l~~~L~~-kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.....+..++.+.. +-=|||||.+-.. -..+.+...+....++.-||+|=|+
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~ 157 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRG 157 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCC
Confidence 23344556666654 4459999999644 2345555555555567799999999
No 406
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.42 E-value=0.035 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+++|+|..|.|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999997
No 407
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.41 E-value=0.14 Score=54.29 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
-..++|.|..|.|||||++.+...... +..+++-+++. +.++.+.+...-.... +.|.....-..
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999874322 22233333333 5555555543321111 00000000011
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
...-.+-+++ +++.+|+++||+-..
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1222234444 579999999999543
No 408
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.41 E-value=0.16 Score=50.60 Aligned_cols=117 Identities=13% Similarity=0.054 Sum_probs=63.5
Q ss_pred echhhH-HHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc--hHHHHHHHHHHhCCCC
Q 039772 130 GLDDRM-EELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY--ADQILDIVIKFLMPSS 206 (608)
Q Consensus 130 Gr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~l~~~il~~l~~~~ 206 (608)
|..... +.+..++... -.+|.|.|..|.||||++.++.+ .+...-..++.+.-..+ ...+ .++.
T Consensus 63 g~~~~~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~~-----~q~~--- 129 (264)
T cd01129 63 GLKPENLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPGI-----NQVQ--- 129 (264)
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCCc-----eEEE---
Confidence 444333 3444444333 35899999999999999998876 44321112222221111 1000 0110
Q ss_pred CcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 207 RLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
............++..|+...=.|+++.+.+.+....+...... |-. ++||=.
T Consensus 130 ----v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~t---Gh~-v~tTlH 182 (264)
T cd01129 130 ----VNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALT---GHL-VLSTLH 182 (264)
T ss_pred ----eCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHc---CCc-EEEEec
Confidence 01011123556677788888889999999998765544443332 433 566655
No 409
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.40 E-value=0.097 Score=50.80 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=19.1
Q ss_pred EEEEcCCCcchHHHHHHHhc
Q 039772 152 VAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~ 171 (608)
|.|.|++|+||||+|+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999988
No 410
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.38 E-value=0.027 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|.|.|..|.||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998
No 411
>PRK13948 shikimate kinase; Provisional
Probab=94.38 E-value=0.037 Score=51.62 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+.|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999998
No 412
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.37 E-value=0.034 Score=55.74 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCcchHHHHHHHhc
Q 039772 147 PQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 147 ~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....+|||.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987765
No 413
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.35 E-value=0.15 Score=46.94 Aligned_cols=82 Identities=7% Similarity=-0.022 Sum_probs=45.7
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT 229 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 229 (608)
++.|.|.+|.||||+|..+.. +... ..+|+.-... ..+..+.|........... ........+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~--~~~~---~~~~iat~~~~~~e~~~ri~~h~~~R~~~w-~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA--QSGL---QVLYIATAQPFDDEMAARIAHHRQRRPAHW-QTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH--HcCC---CcEeCcCCCCChHHHHHHHHHHHhcCCCCC-eEecccccHHHHHHhhcCC
Confidence 688999999999999999987 3211 2344443333 5566666655544321100 0111122344445443433
Q ss_pred CcEEEEEcCC
Q 039772 230 KRYLIVIEDV 239 (608)
Q Consensus 230 kr~LlVLDdv 239 (608)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 336888887
No 414
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.32 E-value=0.13 Score=50.56 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|+|.|.+|.||||+|+++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998887
No 415
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.31 E-value=0.029 Score=64.17 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=58.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHh
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 227 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 227 (608)
.+++.|+|+.|.||||+.+.+.... +. ....++|..... ......++...++...+.. ....+.......+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~-l~--aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~-~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLA-LM--FQSGIPIPANEHSEIPYFEEIFADIGDEQSIE-QNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHH-HH--HHhCCCccCCccccccchhheeeecChHhHHh-hhhhHHHHHHHHHHHHH
Confidence 4789999999999999999887620 00 111122222221 1111222222222111000 00011111122233333
Q ss_pred C--CCcEEEEEcCCCCH---hHHHHH----hhhcCCCCCCcEEEEEccCchhhhc
Q 039772 228 M--TKRYLIVIEDVWTI---GVWDVI----REILPDNHNRSRVLITLTQIEMVTS 273 (608)
Q Consensus 228 ~--~kr~LlVLDdv~~~---~~~~~l----~~~~~~~~~gs~IivTTR~~~~v~~ 273 (608)
. +.+-|+++|..-.. ..-..+ ...+. ..|+.+|+||-. ..+..
T Consensus 398 ~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~-~eL~~ 449 (771)
T TIGR01069 398 SKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHY-KELKA 449 (771)
T ss_pred HhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECCh-HHHHH
Confidence 2 47899999998753 222222 22332 347899999999 66543
No 416
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.30 E-value=0.2 Score=49.12 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHh
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFL 202 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l 202 (608)
-.++.|.|.+|.||||+|..+..+ -...+=..++|++......++...++...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~-~~~~~g~~vly~s~E~~~~~~~~r~~~~~ 65 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAEN-IAKKQGKPVLFFSLEMSKEQLLQRLLASE 65 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH-HHHhCCCceEEEeCCCCHHHHHHHHHHHh
Confidence 358899999999999999887663 12221235778887666566666665443
No 417
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.30 E-value=0.042 Score=53.05 Aligned_cols=23 Identities=9% Similarity=-0.135 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-+++.|.|..|.||||+.+.+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999988876
No 418
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.30 E-value=0.13 Score=51.37 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 135 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 135 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+++.+.... +=+-++|..|+|||++++....
T Consensus 22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhc
Confidence 345566665553 4568999999999999999887
No 419
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.30 E-value=0.032 Score=49.52 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=18.7
Q ss_pred EEEEcCCCcchHHHHHHHhc
Q 039772 152 VAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~ 171 (608)
|-++|.+|+|||+||+.++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998
No 420
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.29 E-value=0.078 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.|-+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4677889999999999999988
No 421
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.28 E-value=0.19 Score=53.23 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
-..++|+|..|+|||||++.+...... +..++..+... +.++....+..-.... +.+........
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~~~----dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~ 230 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYTQA----DVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKAT 230 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcccCC----CeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHH
Confidence 468999999999999999998873211 22222223322 4444444443322111 00001122222
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
+....+.++. +++.+|+++||+-..
T Consensus 231 e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 231 ELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHhhhccCCEEEeecchhHH
Confidence 3333444443 579999999999543
No 422
>PRK06820 type III secretion system ATPase; Validated
Probab=94.27 E-value=0.13 Score=54.59 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=20.4
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|+|..|+|||||++.+..
T Consensus 164 qri~I~G~sG~GKStLl~~I~~ 185 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCA 185 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhc
Confidence 5789999999999999999987
No 423
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.26 E-value=0.059 Score=50.42 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=30.8
Q ss_pred EEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHH
Q 039772 152 VAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDI 197 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~ 197 (608)
+.|.|.+|.|||+||.++... ....=..++|++......++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCHHHHHHH
Confidence 678999999999999887663 22222457788876665554444
No 424
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.18 Score=48.72 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=40.0
Q ss_pred CCCceechhhHHHHHHHHhcC----C-------CCceEEEEEcCCCcchHHHHHHHhcCccccceee
Q 039772 125 SRDTVGLDDRMEELLDLLIEG----P-------PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFD 180 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 180 (608)
.+++-|=.+.++++.+....+ + +..+=|..+|++|.|||-+|++|+| +....|-
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfi 240 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFI 240 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEE
Confidence 456777788888887765432 1 2345578899999999999999999 7666653
No 425
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.25 E-value=0.033 Score=50.28 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=18.9
Q ss_pred EEEEcCCCcchHHHHHHHhc
Q 039772 152 VAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~ 171 (608)
|.++|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 426
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.25 E-value=0.033 Score=53.03 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 427
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.24 E-value=0.19 Score=55.28 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=37.5
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....+++|....+.++.+.+..-...-.-|-|+|-.|.||+++|+++++
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 4556899999988888877754211123477999999999999999876
No 428
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.24 E-value=0.15 Score=53.97 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=51.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccc--eee---------eeeeEecccc--hHHHHHHHHHHhC-CCC--------C
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKH--YFD---------CHAWIPDISY--ADQILDIVIKFLM-PSS--------R 207 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~---------~~~wv~vs~~--~~~l~~~il~~l~-~~~--------~ 207 (608)
+.++|.|-.|+|||||+..+.+..+... -.| .+++.-+++. ..+.+.+.+..-+ ... +
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 5799999999999999999887543100 012 4566666666 4443444443333 111 0
Q ss_pred cccccccCHHHHHHHHHHHhC---CCcEEEEEcCCCC
Q 039772 208 LSEIMDKNYEMKKIILHEYLM---TKRYLIVIEDVWT 241 (608)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~L~---~kr~LlVLDdv~~ 241 (608)
.|.....-.....-.+-++++ ++++|+++||+-.
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 000011111122233555555 5999999999954
No 429
>PRK13946 shikimate kinase; Provisional
Probab=94.23 E-value=0.035 Score=52.04 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+.|.++|++|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999998
No 430
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=94.23 E-value=0.18 Score=53.52 Aligned_cols=89 Identities=9% Similarity=0.042 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCCC--------cccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSSR--------LSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~~--------~~~~~~~~~~ 217 (608)
-..++|.|..|.|||||.+.+.. ..... ...+..+... +.++..+....-..... .|........
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~--~~~~~--~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~ 220 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIAR--GASAD--VNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAA 220 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhC--CCCCC--EEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHH
Confidence 45789999999999999999998 33322 2333333333 55555444433211110 0000000111
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCC
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWT 241 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~ 241 (608)
.....+.+++ +++++|+++||+-.
T Consensus 221 ~~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 221 YTATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCchH
Confidence 2223344444 56899999999954
No 431
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.23 E-value=0.04 Score=51.03 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..|.|+|+.|.||||+|+.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999998
No 432
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.22 E-value=0.037 Score=49.22 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=25.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCcccc-ceeeeeeeEe
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWIP 186 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~ 186 (608)
++|.|+|..|+|||||++.+.+ ... ..+...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEE
Confidence 4899999999999999999999 554 3444444444
No 433
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.035 Score=50.20 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.6
Q ss_pred EEEEEcCCCcchHHHHHHHh
Q 039772 151 VVAILDSIGLDKTAFATEAY 170 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~ 170 (608)
.|.|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 434
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.20 E-value=0.035 Score=52.96 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+|+|+|+.|+||||||+.++.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999998
No 435
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.18 E-value=0.043 Score=51.49 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhcC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.++.|+|+.|.|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999883
No 436
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.18 E-value=0.081 Score=52.76 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHhCCCC---CcccccccCHHHHHHHH
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFLMPSS---RLSEIMDKNYEMKKIIL 223 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l~~~~---~~~~~~~~~~~~~~~~l 223 (608)
+..+|.|+|.+|.|||||...+.+ .....+. ++.+..... ... .+.+...+... .....-..+.......+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~-~~VI~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al 177 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP-CAVIEGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADAA 177 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhccCCC-EEEECCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHHH
Confidence 589999999999999999999998 5544432 222221111 211 12233322210 00001122334445555
Q ss_pred HHHhCCCcEEEEEcCCCC
Q 039772 224 HEYLMTKRYLIVIEDVWT 241 (608)
Q Consensus 224 ~~~L~~kr~LlVLDdv~~ 241 (608)
...-....-++|+++|.+
T Consensus 178 ~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 178 PRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHhhcCCcEEEEECCCC
Confidence 554444456788899854
No 437
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.15 E-value=0.044 Score=52.40 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.7
Q ss_pred cCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 144 EGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 144 ~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+....++|.|+|++|+|||||++.+..
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3344678899999999999999999976
No 438
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.13 E-value=0.12 Score=54.85 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-..++|+|..|+|||||.+.+.+
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~ 197 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMAR 197 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhC
Confidence 46799999999999999999988
No 439
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=0.0062 Score=58.93 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=0.0
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCCh--HHHhcCcc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPS--SLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~--si~~~L~~ 535 (608)
+.+++.|++.||... .+ .+..+|+.|+||.|+-|.|+.+- .+..+++|+.|.|+.|.|..|-+ -+ .+|++
T Consensus 18 l~~vkKLNcwg~~L~----DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YL-knlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD----DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYL-KNLPS 89 (388)
T ss_pred HHHhhhhcccCCCcc----HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHH-hcCch
Q ss_pred CcEEecccc-ccccchhH-----hcccccCcEEE
Q 039772 536 LYTLDMPFS-YIEHTADE-----FWKMNKLRHLN 563 (608)
Q Consensus 536 L~~L~L~~~-~l~~lP~~-----i~~L~~L~~L~ 563 (608)
|++|.|-.| ...+-+.. +.-|+||+.|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
No 440
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=94.12 E-value=0.14 Score=54.86 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=55.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC---------------Ccccc
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS---------------RLSEI 211 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~---------------~~~~~ 211 (608)
+.++|.|..|+|||||+..+.... ...+=+.++|+-+++. +.++...++..-.... +.|..
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~ 240 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 240 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHH-HHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHH
Confidence 579999999999999999887731 1111166788877776 6777777665211110 00000
Q ss_pred cccCHHHHHHHHHHHhC--CC-cEEEEEcCCCCH
Q 039772 212 MDKNYEMKKIILHEYLM--TK-RYLIVIEDVWTI 242 (608)
Q Consensus 212 ~~~~~~~~~~~l~~~L~--~k-r~LlVLDdv~~~ 242 (608)
...-.....-.+-++++ ++ ++||++||+-..
T Consensus 241 ~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 241 ARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 01111223344667773 44 999999999543
No 441
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.12 E-value=0.2 Score=48.05 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=18.6
Q ss_pred EEEEcCCCcchHHHHHHHhc
Q 039772 152 VAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~ 171 (608)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 442
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.07 E-value=0.14 Score=47.12 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=33.1
Q ss_pred ceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 128 TVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 128 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
+||.+..+.++.+.+..-.....-|-|+|-.|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888887653222244569999999999999999993
No 443
>PRK14528 adenylate kinase; Provisional
Probab=94.06 E-value=0.26 Score=46.19 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=19.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.|.|.|++|.||||+|+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 444
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.05 E-value=0.15 Score=52.29 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=18.3
Q ss_pred EEEEcCCCcchHHHHHHHhc
Q 039772 152 VAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~ 171 (608)
+.+.|++|.||||+|+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999987
No 445
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.05 E-value=0.042 Score=50.56 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=17.8
Q ss_pred EEEEcCCCcchHHHHHHHhc
Q 039772 152 VAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~ 171 (608)
|.|.|.+|+|||||++.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 446
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.04 E-value=0.06 Score=47.53 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEEccCCCccccceeeecc
Confidence 5899999999999999999987
No 447
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.02 E-value=0.077 Score=54.30 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 135 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 135 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+.+.+........+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4456666654445678999999999999999998777
No 448
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.03 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=20.5
Q ss_pred EEEEEcCCCcchHHHHHHHhcC
Q 039772 151 VVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
+|.|-|.+|.||||+|+.+..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6899999999999999999993
No 449
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.97 E-value=0.26 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhcC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999884
No 450
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.97 E-value=0.086 Score=50.78 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=20.0
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+++.|.|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999853
No 451
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=93.97 E-value=0.18 Score=54.49 Aligned_cols=89 Identities=17% Similarity=0.069 Sum_probs=52.3
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCccccceeee-eeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCH
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNY 216 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~ 216 (608)
+.++|.|..|+|||||| ..+.+. . .-+. ++++-+++. +.++.+.+...=.... +.|.....-.
T Consensus 162 Qr~~I~g~~g~GKt~Lal~~i~~~--~--~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a 237 (501)
T TIGR00962 162 QRELIIGDRQTGKTAVAIDTIINQ--K--DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLA 237 (501)
T ss_pred CEEEeecCCCCCccHHHHHHHHhh--c--CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHH
Confidence 56899999999999996 667662 2 3355 477777776 6777777665422111 0000000000
Q ss_pred HHHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 217 EMKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 217 ~~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
....-.+-+++ +++.+|||+||+-..
T Consensus 238 ~~~a~aiAEyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 238 PYTGCTMAEYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecchHHH
Confidence 11122233333 479999999999644
No 452
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.95 E-value=0.35 Score=49.85 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=41.1
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce----eeeeeeEecccc--hHHHHHHHHHHhCC
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY----FDCHAWIPDISY--ADQILDIVIKFLMP 204 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~--~~~l~~~il~~l~~ 204 (608)
+-++|..+=..-++.-|+|.+|+|||+|+..++-....... -..++|++-... +.++ .++++.++.
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl-~~ia~~~g~ 186 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRI-VPIAERFGM 186 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHH-HHHHHHcCC
Confidence 33445444334578889999999999999887642233211 235889987665 3443 345555543
No 453
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.13 Score=49.09 Aligned_cols=53 Identities=23% Similarity=0.159 Sum_probs=40.4
Q ss_pred CCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 125 SRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
..++-|.|-.++++.+...-+ -+..+=|..+|++|.|||.||++|+| .....|
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~--~t~a~f 217 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN--HTTAAF 217 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhh--ccchhe
Confidence 456788998999888876432 12356688999999999999999999 444444
No 454
>PLN02348 phosphoribulokinase
Probab=93.95 E-value=0.07 Score=55.35 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=23.6
Q ss_pred CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 146 PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 146 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+...+|||.|.+|.||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999998
No 455
>PRK14530 adenylate kinase; Provisional
Probab=93.95 E-value=0.041 Score=53.00 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.1
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.|.|+|++|.||||+|+.++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 456
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.93 E-value=0.29 Score=50.01 Aligned_cols=67 Identities=16% Similarity=0.062 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee----eeeeeEecccc--hHHHHHHHHHHhC
Q 039772 136 EELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF----DCHAWIPDISY--ADQILDIVIKFLM 203 (608)
Q Consensus 136 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~--~~~l~~~il~~l~ 203 (608)
..+-.+|..+=..-.++.|+|.+|.||||||..++......... ..++|++.... ..+ +.++++.++
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 34445555543456899999999999999998887522221111 24689886654 333 333444443
No 457
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.92 E-value=0.19 Score=53.56 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|..|.|||||++.+.+
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~ 180 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIAR 180 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999988
No 458
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.91 E-value=0.048 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|||+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 459
>PRK13975 thymidylate kinase; Provisional
Probab=93.88 E-value=0.046 Score=51.71 Aligned_cols=25 Identities=16% Similarity=0.031 Sum_probs=22.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCcccc
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVK 176 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 176 (608)
.+|.|.|+.|+||||+|+.+.. +..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~--~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE--KLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HhC
Confidence 4799999999999999999999 554
No 460
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.87 E-value=0.051 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|.|.|.+|+||||+|+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999999
No 461
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.037 Score=54.28 Aligned_cols=37 Identities=24% Similarity=0.087 Sum_probs=16.0
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLV 498 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~ 498 (608)
+|.+++|.+..+... ..+.......++|++|-|.|+.
T Consensus 96 lP~l~~LNls~N~L~----s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 96 LPALTTLNLSCNSLS----SDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred CccceEeeccCCcCC----CccccCcccccceEEEEEcCCC
Confidence 455555555544443 1111111334455555555544
No 462
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.86 E-value=0.046 Score=52.91 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 147 PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 147 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
+....|.++||+|.||||+.+.++. .+...+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~--hl~~~~ 47 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNS--HLHAKK 47 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHH--HHhhcc
Confidence 3466788899999999999999998 444444
No 463
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.85 E-value=0.043 Score=50.07 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.6
Q ss_pred EEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
-|.++||.|+||||+.++++. +..-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 478899999999999999988 555554
No 464
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.85 E-value=0.15 Score=51.67 Aligned_cols=90 Identities=16% Similarity=0.041 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCc-ccccccCHHHHHHHHHHH
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRL-SEIMDKNYEMKKIILHEY 226 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~-~~~~~~~~~~~~~~l~~~ 226 (608)
.-+++-|+|..|+||||||.++.. .....-..++|++.... +-...++.++.+-+. --..+.+.++....+...
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~---ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~l 126 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHA---LDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQL 126 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS------HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCccc---chhhHHHhcCccccceEEecCCcHHHHHHHHHHH
Confidence 457999999999999999988887 55444455889987655 222334444432110 002344556666666666
Q ss_pred hCC-CcEEEEEcCCCCH
Q 039772 227 LMT-KRYLIVIEDVWTI 242 (608)
Q Consensus 227 L~~-kr~LlVLDdv~~~ 242 (608)
++. ..-+||+|-|-..
T Consensus 127 irsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 127 IRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHTTSESEEEEE-CTT-
T ss_pred hhcccccEEEEecCccc
Confidence 654 4568999998643
No 465
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.44 Score=45.40 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCHhHHHHHh---hhcCC-CCCCcEEEEEccCchhhhcc
Q 039772 219 KKIILHEYLMTKRYLIVIEDVWTIGVWDVIR---EILPD-NHNRSRVLITLTQIEMVTSF 274 (608)
Q Consensus 219 ~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~---~~~~~-~~~gs~IivTTR~~~~v~~~ 274 (608)
...+|.+.+--++-|.|||..++.-+.+.+. ..... ..+|+-+||.|-. ++++..
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy-~rll~~ 209 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY-QRLLDY 209 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH-HHHHhh
Confidence 3445556666677899999998764444333 22221 2347777888877 666654
No 466
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.064 Score=60.26 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=37.1
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-..++||+++++++++.|.....+-+| .+|-+|+|||++|.-++.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHH
Confidence 457899999999999999887554444 579999999998876666
No 467
>PF13245 AAA_19: Part of AAA domain
Probab=93.80 E-value=0.085 Score=41.40 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCcchHH-HHHHHhcCccc--ccee-eeeeeEecccc-hHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTA-FATEAYNSSYV--KHYF-DCHAWIPDISY-ADQILDIV 198 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTt-LA~~v~~~~~~--~~~F-~~~~wv~vs~~-~~~l~~~i 198 (608)
-+++.|.|.+|.|||+ ++..+.. .+ .... +.+..++.++. ...+.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~--l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE--LLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3578889999999995 4455444 22 1122 23555655544 55555555
No 468
>PRK04182 cytidylate kinase; Provisional
Probab=93.80 E-value=0.051 Score=50.49 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|.|.|+.|.||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 469
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.80 E-value=0.21 Score=56.62 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=38.2
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
....++|.+..+.++.+.+..-...-.-|-|+|-.|.||+++|+++++.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 3467999999998888877653222233679999999999999999983
No 470
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.79 E-value=0.2 Score=52.98 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~~~ 217 (608)
-..++|+|..|.|||||++.++... ... ..++.+ +.+. ..++....+..-+... +.+.....-..
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~--~~~-~gvI~~-iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNA--KAD-INVISL-VGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC--CCC-eEEEEe-CCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998843 221 122222 3222 5566555554422111 00000001111
Q ss_pred HHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 218 MKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 218 ~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
.....+-+++ +++.+||++||+-..
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 2222333333 479999999999655
No 471
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=93.76 E-value=0.2 Score=53.59 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=55.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCcccc---ceeeeeeeEecccc---hHHHHHHHHHHhCCCC--------CcccccccC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVK---HYFDCHAWIPDISY---ADQILDIVIKFLMPSS--------RLSEIMDKN 215 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~~~~~~ 215 (608)
+.++|.|..|+|||||+..+.+..... ..| .++++-+++. +.++.+.+...=.... +.|.....-
T Consensus 144 QR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 222 (460)
T PRK04196 144 QKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERIL 222 (460)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHH
Confidence 568999999999999999998854332 122 4667777666 7777777765421111 000001111
Q ss_pred HHHHHHHHHHHhC---CCcEEEEEcCCCC
Q 039772 216 YEMKKIILHEYLM---TKRYLIVIEDVWT 241 (608)
Q Consensus 216 ~~~~~~~l~~~L~---~kr~LlVLDdv~~ 241 (608)
.....-.+-++++ ++++|+++||+-.
T Consensus 223 a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 223 TPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 1222344666665 4999999999954
No 472
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.73 E-value=0.18 Score=51.36 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=54.2
Q ss_pred CCCceechhhHHHHHHHHhcC----CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEe----cccc-----h
Q 039772 125 SRDTVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIP----DISY-----A 191 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~----vs~~-----~ 191 (608)
...++|.++.++++++.+... +..-+|+-++|+.|.||||||..+-+ -...+ .+|.- +.+. +
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~--~le~y---~~Y~l~~~Pm~e~PL~L~P 134 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR--GLEEY---PIYTLKGCPMHEEPLHLFP 134 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH--HhheE---EEEEecCCccccChhhhCC
Confidence 358999999999999999763 34578999999999999999999988 44444 33331 2122 5
Q ss_pred HHHHHHHHHHhCC
Q 039772 192 DQILDIVIKFLMP 204 (608)
Q Consensus 192 ~~l~~~il~~l~~ 204 (608)
.++-+.+.+.++.
T Consensus 135 ~~~r~~~~~~~~~ 147 (358)
T PF08298_consen 135 KELRREFEDELGI 147 (358)
T ss_pred HhHHHHHHHHhCc
Confidence 5555666666655
No 473
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.72 E-value=0.12 Score=47.60 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=44.5
Q ss_pred EEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC-
Q 039772 152 VAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT- 229 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~- 229 (608)
+.|.|..|.|||++|.++.. . ....++|+.-.+. -.++.+.|.+...... ..+...+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~--~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~-----~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAA--E---LGGPVTYIATAEAFDDEMAERIARHRKRRP-----AHWRTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH--h---cCCCeEEEEccCcCCHHHHHHHHHHHHhCC-----CCceEeecHHHHHHHHHhc
Confidence 67899999999999999876 2 2235667765555 4455555555333221 112222223334444421
Q ss_pred -CcEEEEEcCC
Q 039772 230 -KRYLIVIEDV 239 (608)
Q Consensus 230 -kr~LlVLDdv 239 (608)
+.-.|++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2336888987
No 474
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.72 E-value=0.29 Score=49.64 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=58.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeee-eeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDC-HAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM 228 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 228 (608)
..+.|.|..|.||||+++++.+ .+....+. ++ +++... .++. +.......-..........+.++..|+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~--~i~~~~~~~ri-~tiEd~-~El~------~~~~~~v~~~~~~~~~~~~~~l~~aLR 202 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLA--EIAKNDPTDRV-VIIEDT-RELQ------CAAPNVVQLRTSDDAISMTRLLKATLR 202 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HhhccCCCceE-EEECCc-hhhc------CCCCCEEEEEecCCCCCHHHHHHHHhc
Confidence 4577999999999999999987 55443221 22 222222 1110 000000000000011145667888888
Q ss_pred CCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 229 TKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 229 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
...=-||+..+...+.++.+. +...+..|+ +||=.
T Consensus 203 ~~pD~iivGEiR~~ea~~~l~-a~~tGh~G~---~tTiH 237 (299)
T TIGR02782 203 LRPDRIIVGEVRGGEALDLLK-AWNTGHPGG---IATIH 237 (299)
T ss_pred CCCCEEEEeccCCHHHHHHHH-HHHcCCCCe---EEeec
Confidence 888899999999988776543 333444444 55555
No 475
>PRK05973 replicative DNA helicase; Provisional
Probab=93.65 E-value=0.11 Score=50.61 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIV 198 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~i 198 (608)
-.++.|.|.+|+|||++|.++... ...+=..++|++......++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYTEQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCCHHHHHHHH
Confidence 358889999999999999887662 323334577777666555555554
No 476
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.64 E-value=0.12 Score=50.10 Aligned_cols=48 Identities=17% Similarity=0.076 Sum_probs=28.1
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccc-------cceee-eeeeEecccc-hHHHHHHHHH
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYV-------KHYFD-CHAWIPDISY-ADQILDIVIK 200 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~-------~~~F~-~~~wv~vs~~-~~~l~~~il~ 200 (608)
+..|+|++|.||||++..+.. .+ ...-. .+++++-+.. +..+...+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~--~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIA--QLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHH--HH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHH--HhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999986666655 33 12222 2555555544 5555555554
No 477
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.12 Score=56.66 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=57.9
Q ss_pred CCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHH
Q 039772 126 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQI 194 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l 194 (608)
.++.|.+...+.+.+.+... -...+.+-++|++|.|||.||+++++ .....|-.+..-.+
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~~l------- 312 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGSEL------- 312 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCHHH-------
Confidence 45666676666666554321 13456888999999999999999999 66666644332221
Q ss_pred HHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 039772 195 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWT 241 (608)
Q Consensus 195 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 241 (608)
+... -..+...........-+...+.|.+|.++.
T Consensus 313 ----~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs 346 (494)
T COG0464 313 ----LSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred ----hccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhh
Confidence 1111 112223333334444457889999999963
No 478
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.62 E-value=0.12 Score=52.81 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc--hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY--ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 226 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 226 (608)
-..+.|+|..|.||||+++++.. .+.... .++.+.-..+ ... .... .+..... ......-...+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~--~~~~~~-~iv~ied~~El~~~~--~~~~-~l~~~~~---~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVD--EIPKDE-RIITIEDTREIFLPH--PNYV-HLFYSKG---GQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc--cCCccc-cEEEEcCccccCCCC--CCEE-EEEecCC---CCCcCccCHHHHHHHH
Confidence 36899999999999999999987 343222 2222211111 100 0000 0000000 0011112334556667
Q ss_pred hCCCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 227 LMTKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 227 L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
|+...=.||+|.+...+.++.+... ..+..| ++.|+-.
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~-~~g~~~--~i~T~Ha 252 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAV-NTGHPG--SITTLHA 252 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHH-hcCCCe--EEEEEeC
Confidence 8888888999999988777654433 333222 3555555
No 479
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.61 E-value=0.062 Score=45.08 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=19.6
Q ss_pred eEEEEEcCCCcchHHHHHHHh
Q 039772 150 SVVAILDSIGLDKTAFATEAY 170 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~ 170 (608)
..++|+|..|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 679999999999999999986
No 480
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.59 E-value=0.0033 Score=59.24 Aligned_cols=93 Identities=16% Similarity=0.068 Sum_probs=0.0
Q ss_pred ecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCC
Q 039772 493 DLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPA 571 (608)
Q Consensus 493 ~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~ 571 (608)
+++-..+.++| ..|.....-+.||++.+.+..+-..+ +.++.|..||++.|.+.-+|...+.+..++++.+..|| .
T Consensus 24 ~~s~s~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~--~ 100 (326)
T KOG0473|consen 24 DLSLSELSEIPVREIASFKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN--H 100 (326)
T ss_pred CCCHHHhcccchhhhhccceeeeehhhhhHHHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc--h
Q ss_pred cCCC-CCCCCcccceeec
Q 039772 572 HPGK-YCGSLENLNFISA 588 (608)
Q Consensus 572 ~~lP-~i~~L~~L~~l~~ 588 (608)
...| +.+++..+..++.
T Consensus 101 ~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 101 SQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hhCCccccccCCcchhhh
No 481
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=93.58 E-value=0.21 Score=53.81 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=51.2
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCccccceeee-eeeEecccc---hHHHHHHHHHHhCCCCCc--cccccc-CH-----
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWIPDISY---ADQILDIVIKFLMPSSRL--SEIMDK-NY----- 216 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~---~~~l~~~il~~l~~~~~~--~~~~~~-~~----- 216 (608)
+.++|.|..|+|||||| ..+.+ .. .-+. ++++-+++. +.++.+.+...=...... -..... ..
T Consensus 163 QR~~I~g~~g~GKt~Lal~~i~~--~~--~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~a 238 (502)
T PRK13343 163 QRELIIGDRQTGKTAIAIDAIIN--QK--DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLA 238 (502)
T ss_pred CEEEeeCCCCCCccHHHHHHHHh--hc--CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHH
Confidence 56899999999999996 66666 21 2344 367777776 666666665532111100 000000 00
Q ss_pred HHHHHHHHHHh--CCCcEEEEEcCCCCH
Q 039772 217 EMKKIILHEYL--MTKRYLIVIEDVWTI 242 (608)
Q Consensus 217 ~~~~~~l~~~L--~~kr~LlVLDdv~~~ 242 (608)
......+-+++ +++++|||+||+-..
T Consensus 239 p~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 239 PFAGCAIAEYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecchHHH
Confidence 11112233444 579999999999654
No 482
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.58 E-value=0.054 Score=50.01 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=20.1
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.|.|+|+.|.||||+|+.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588899999999999999998
No 483
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.48 Score=48.97 Aligned_cols=101 Identities=19% Similarity=0.124 Sum_probs=60.5
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCc-ccc
Q 039772 133 DRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRL-SEI 211 (608)
Q Consensus 133 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~-~~~ 211 (608)
....++-..|-.+--.-.+|.|=|-+|||||||.-++.. ++...- .+.||+--+.+.+ .+--+..|+...+. --.
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~Q-iklRA~RL~~~~~~l~l~ 152 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQQ-IKLRADRLGLPTNNLYLL 152 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHHH-HHHHHHHhCCCccceEEe
Confidence 344555555555422346899999999999999999888 565554 7888875544221 22223445432211 002
Q ss_pred cccCHHHHHHHHHHHhCCCcEEEEEcCCC
Q 039772 212 MDKNYEMKKIILHEYLMTKRYLIVIEDVW 240 (608)
Q Consensus 212 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 240 (608)
...+.++..+.+.+ .+.-|+|+|-+.
T Consensus 153 aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 153 AETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred hhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 33344554444444 688899999984
No 484
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.50 E-value=0.09 Score=53.47 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 136 EELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 136 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+.+-+........+|+|+|.+|+|||||+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 344444444444578999999999999999998877
No 485
>PRK13695 putative NTPase; Provisional
Probab=93.50 E-value=0.064 Score=49.70 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=19.4
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|+|+|.+|+|||||++.+++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 486
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.49 E-value=0.058 Score=50.10 Aligned_cols=22 Identities=9% Similarity=0.142 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.||||+++.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999998
No 487
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.47 E-value=0.25 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-+|++++|..|+||||++.+++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 47999999999999999998887
No 488
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.47 E-value=0.1 Score=57.79 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=36.7
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++..+.|.+-.+.|.+........-.+|.|+|+.|.||||+|+.++.
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHH
Confidence 45666777777766666555544566899999999999999999998
No 489
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.43 E-value=0.061 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEcCCCcchHHHHHHHhcCc
Q 039772 152 VAILDSIGLDKTAFATEAYNSS 173 (608)
Q Consensus 152 i~I~G~gGiGKTtLA~~v~~~~ 173 (608)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 490
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=93.43 E-value=0.22 Score=53.92 Aligned_cols=87 Identities=15% Similarity=-0.020 Sum_probs=50.7
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCccccceeee-eeeEecccc---hHHHHHHHHHHhCCCCC--------ccc----cc
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWIPDISY---ADQILDIVIKFLMPSSR--------LSE----IM 212 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~---~~~l~~~il~~l~~~~~--------~~~----~~ 212 (608)
+.++|.|..|+|||||| ..+.+ .. .-+. ++|+-+++. +.++.+.+...=..... .|. ..
T Consensus 163 Qr~~Ifg~~g~GKt~lal~~i~~--~~--~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a 238 (502)
T PRK09281 163 QRELIIGDRQTGKTAIAIDTIIN--QK--GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLA 238 (502)
T ss_pred cEEEeecCCCCCchHHHHHHHHH--hc--CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHH
Confidence 57899999999999995 55555 22 2344 377777777 66666666553221110 000 00
Q ss_pred ccCHHHHHHHHHHHhCCCcEEEEEcCCCCH
Q 039772 213 DKNYEMKKIILHEYLMTKRYLIVIEDVWTI 242 (608)
Q Consensus 213 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~ 242 (608)
....-...++++. +++++|+|+||+-..
T Consensus 239 ~~~a~tiAEyfrd--~G~~VLli~DdlTr~ 266 (502)
T PRK09281 239 PYAGCAMGEYFMD--NGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEecCchHH
Confidence 0111122333333 379999999999654
No 491
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=93.43 E-value=0.051 Score=50.69 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|+|+|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999877
No 492
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.39 E-value=0.12 Score=50.92 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 135 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 135 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+++..+.....+..+|||.|.||+|||||.-++..
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHH
Confidence 4566677766666789999999999999999988777
No 493
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.39 E-value=0.26 Score=52.66 Aligned_cols=87 Identities=11% Similarity=-0.003 Sum_probs=50.8
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCccccceeee-eeeEecccc---hHHHHHHHHHHhCCCCCc--------cc----cc
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWIPDISY---ADQILDIVIKFLMPSSRL--------SE----IM 212 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~---~~~l~~~il~~l~~~~~~--------~~----~~ 212 (608)
+.++|.|..|+|||||| ..+.+ .. .-+. ++++-+++. +.++.+.+...=...... |. ..
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~--q~--~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~a 217 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILN--QK--GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLA 217 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHh--cc--cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHH
Confidence 56899999999999996 55666 22 2344 367777766 666666665532211100 00 00
Q ss_pred ccCHHHHHHHHHHHhCCCcEEEEEcCCCCH
Q 039772 213 DKNYEMKKIILHEYLMTKRYLIVIEDVWTI 242 (608)
Q Consensus 213 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~ 242 (608)
....-...++++. +++++|+|+||+-..
T Consensus 218 p~~a~aiAEyfr~--~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 218 PYTGAALAEYFMY--RGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHhhHHHHHHH--cCCCEEEEEcChhHH
Confidence 0011112333443 579999999999654
No 494
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.39 E-value=0.32 Score=52.95 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=38.1
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
...++|....+.++...+..-...-.-|.|.|-+|.|||++|+.+++.
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 356999998888888777543333455789999999999999999984
No 495
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.35 E-value=0.58 Score=43.69 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++.|.|.+|.||||+|+.+..
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999998
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.32 E-value=0.073 Score=49.92 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++|.|+|++|+|||||++.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999999988
No 497
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.31 E-value=0.073 Score=53.08 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=27.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEe
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIP 186 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 186 (608)
++|+|+|.+|.|||||+..+.. ..+... .++-+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD--RLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhCC-CEEEEE
Confidence 5899999999999999999998 665554 355554
No 498
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.30 E-value=0.46 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 499
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=1 Score=46.00 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=26.7
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+.+...+..+. -..-+.+.|+.|+||+|+|..+++
T Consensus 12 ~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~ 48 (319)
T PRK08769 12 AYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAE 48 (319)
T ss_pred HHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHH
Confidence 3445555554443 345688999999999999988876
No 500
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.27 E-value=0.057 Score=48.99 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.7
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccc
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKH 177 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~ 177 (608)
|++|+|+.|+|||||+.++.. ..+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~--~l~~ 25 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK--ALKA 25 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHh
Confidence 589999999999999999998 5443
Done!