Query 039772
Match_columns 608
No_of_seqs 374 out of 3815
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.7E-41 9.3E-46 371.4 20.7 273 129-423 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1E-34 3.4E-39 350.2 21.2 282 121-421 119-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 8.9E-34 3.1E-38 316.7 17.4 253 127-414 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-31 4.7E-36 297.9 22.9 276 122-419 120-450 (591)
5 4fcg_A Uncharacterized protein 99.5 1.4E-14 4.9E-19 148.3 10.7 163 437-607 127-305 (328)
6 4fcg_A Uncharacterized protein 99.5 2.8E-14 9.7E-19 146.1 12.0 165 436-608 103-282 (328)
7 2o6q_A Variable lymphocyte rec 99.5 2.1E-13 7.1E-18 135.5 14.0 166 436-607 36-209 (270)
8 1p9a_G Platelet glycoprotein I 99.4 4.3E-13 1.5E-17 134.7 13.2 164 436-607 30-199 (290)
9 3m19_A Variable lymphocyte rec 99.4 4.9E-13 1.7E-17 131.3 13.0 149 435-589 33-187 (251)
10 1ozn_A Reticulon 4 receptor; N 99.4 4.2E-13 1.4E-17 134.4 12.4 165 437-607 56-229 (285)
11 3m19_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 129.8 13.3 145 458-608 34-184 (251)
12 1ozn_A Reticulon 4 receptor; N 99.4 7.4E-13 2.5E-17 132.6 12.5 147 436-589 31-185 (285)
13 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 126.9 13.1 126 458-589 39-167 (229)
14 2o6q_A Variable lymphocyte rec 99.4 8.6E-13 2.9E-17 131.1 12.6 164 438-608 17-186 (270)
15 1ogq_A PGIP-2, polygalacturona 99.4 2.7E-13 9.3E-18 137.8 9.1 126 437-567 50-184 (313)
16 3rfs_A Internalin B, repeat mo 99.4 1.4E-12 4.8E-17 129.7 14.1 145 437-589 63-213 (272)
17 3zyi_A Leucine-rich repeat-con 99.4 8.4E-13 2.9E-17 141.4 13.1 149 435-589 73-226 (452)
18 3zyj_A Leucine-rich repeat-con 99.4 1.2E-12 4.2E-17 139.6 13.5 149 435-589 62-215 (440)
19 1h6t_A Internalin B; cell adhe 99.4 1.8E-12 6.3E-17 130.2 14.1 120 458-589 67-186 (291)
20 1p9a_G Platelet glycoprotein I 99.4 1.5E-12 5.1E-17 130.8 12.7 163 437-608 10-177 (290)
21 1h6u_A Internalin H; cell adhe 99.4 2.1E-12 7.1E-17 130.9 13.5 159 436-608 62-222 (308)
22 2v9t_B SLIT homolog 2 protein 99.4 1.6E-12 5.5E-17 125.0 11.4 126 458-589 31-160 (220)
23 3rfs_A Internalin B, repeat mo 99.4 1.8E-12 6.2E-17 128.9 12.2 162 437-608 41-210 (272)
24 1ogq_A PGIP-2, polygalacturona 99.4 9.6E-13 3.3E-17 133.7 9.7 125 437-567 76-207 (313)
25 1h6u_A Internalin H; cell adhe 99.4 6.2E-12 2.1E-16 127.4 14.7 139 437-589 85-225 (308)
26 4g8a_A TOLL-like receptor 4; l 99.4 1.1E-12 3.7E-17 146.3 9.7 128 458-589 51-181 (635)
27 2o6s_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 121.6 11.6 105 458-566 51-157 (208)
28 4b8c_D Glucose-repressible alc 99.3 1.2E-12 4.1E-17 148.1 8.8 109 478-589 215-324 (727)
29 1m9s_A Internalin B; cell inva 99.3 4.3E-12 1.5E-16 140.1 13.0 140 437-589 65-205 (605)
30 2v70_A SLIT-2, SLIT homolog 2 99.3 5E-12 1.7E-16 121.5 11.7 126 458-589 31-161 (220)
31 4ezg_A Putative uncharacterize 99.3 3.3E-12 1.1E-16 120.5 10.2 142 437-589 44-189 (197)
32 4ezg_A Putative uncharacterize 99.3 8.8E-12 3E-16 117.5 12.2 141 458-608 43-186 (197)
33 3rgz_A Protein brassinosteroid 99.3 5.6E-12 1.9E-16 144.1 12.7 73 533-607 631-708 (768)
34 2z62_A TOLL-like receptor 4, v 99.3 3.5E-12 1.2E-16 127.0 9.2 128 436-568 27-160 (276)
35 2o6s_A Variable lymphocyte rec 99.3 6.9E-12 2.4E-16 119.3 10.8 126 458-589 27-156 (208)
36 3o6n_A APL1; leucine-rich repe 99.3 8.2E-12 2.8E-16 130.9 12.3 129 436-568 44-176 (390)
37 3vq2_A TLR4, TOLL-like recepto 99.3 3.5E-12 1.2E-16 141.8 9.7 148 435-589 30-189 (606)
38 3zyi_A Leucine-rich repeat-con 99.3 8.6E-12 2.9E-16 133.5 12.0 145 457-607 73-222 (452)
39 2z62_A TOLL-like receptor 4, v 99.3 1.2E-11 4E-16 123.1 12.0 147 436-589 51-208 (276)
40 3oja_B Anopheles plasmodium-re 99.3 8.4E-12 2.9E-16 138.4 12.1 128 437-568 51-182 (597)
41 1xeu_A Internalin C; cellular 99.3 1.3E-11 4.4E-16 122.1 11.8 139 436-589 40-180 (263)
42 2id5_A Lingo-1, leucine rich r 99.3 6.9E-12 2.4E-16 135.1 10.7 148 435-589 30-184 (477)
43 1xku_A Decorin; proteoglycan, 99.3 3.1E-11 1.1E-15 123.4 15.0 145 435-589 50-200 (330)
44 2ell_A Acidic leucine-rich nuc 99.3 9.5E-12 3.2E-16 114.0 9.9 125 458-589 23-155 (168)
45 4ecn_A Leucine-rich repeat pro 99.3 4.4E-12 1.5E-16 145.1 9.2 125 479-607 440-599 (876)
46 4eco_A Uncharacterized protein 99.3 2.8E-12 9.5E-17 143.3 7.2 125 479-607 198-357 (636)
47 3o6n_A APL1; leucine-rich repe 99.3 8.4E-12 2.9E-16 130.8 10.4 127 458-590 44-174 (390)
48 3zyj_A Leucine-rich repeat-con 99.3 1.4E-11 5E-16 131.2 12.4 146 457-608 62-212 (440)
49 2xwt_C Thyrotropin receptor; s 99.3 7.2E-12 2.5E-16 121.9 9.2 147 437-589 55-213 (239)
50 2z80_A TOLL-like receptor 2, v 99.3 6.9E-12 2.4E-16 129.6 9.4 147 436-589 51-206 (353)
51 2je0_A Acidic leucine-rich nuc 99.3 5.6E-12 1.9E-16 113.0 7.6 125 458-589 16-148 (149)
52 2xwt_C Thyrotropin receptor; s 99.3 9E-12 3.1E-16 121.2 9.5 165 435-607 29-209 (239)
53 2ell_A Acidic leucine-rich nuc 99.3 8.7E-12 3E-16 114.2 8.8 132 435-575 22-163 (168)
54 3oja_B Anopheles plasmodium-re 99.3 8.9E-12 3E-16 138.2 10.5 127 458-590 50-180 (597)
55 2z80_A TOLL-like receptor 2, v 99.3 3.6E-12 1.2E-16 131.8 6.8 127 458-589 51-182 (353)
56 1a9n_A U2A', U2A'; complex (nu 99.3 5.8E-12 2E-16 116.5 7.6 124 458-589 18-148 (176)
57 2z66_A Variable lymphocyte rec 99.3 6.7E-12 2.3E-16 126.9 8.6 142 458-607 77-227 (306)
58 4eco_A Uncharacterized protein 99.3 5.7E-12 1.9E-16 140.8 8.8 146 436-589 248-410 (636)
59 3e6j_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 118.3 11.0 130 435-569 38-171 (229)
60 1h6t_A Internalin B; cell adhe 99.3 2.5E-11 8.6E-16 121.9 12.4 138 458-608 45-183 (291)
61 3vq2_A TLR4, TOLL-like recepto 99.2 7.9E-12 2.7E-16 138.9 9.1 127 458-589 31-161 (606)
62 1wwl_A Monocyte differentiatio 99.2 1.1E-11 3.8E-16 125.8 9.3 164 434-607 118-300 (312)
63 2id5_A Lingo-1, leucine rich r 99.2 1.9E-11 6.6E-16 131.6 11.7 145 457-607 30-180 (477)
64 4ecn_A Leucine-rich repeat pro 99.2 1.2E-11 4.3E-16 141.4 10.6 146 436-589 490-652 (876)
65 2ft3_A Biglycan; proteoglycan, 99.2 3.5E-11 1.2E-15 123.1 12.9 125 436-567 53-182 (332)
66 2z66_A Variable lymphocyte rec 99.2 1.5E-11 5E-16 124.4 9.7 126 458-589 125-256 (306)
67 4fmz_A Internalin; leucine ric 99.2 4.8E-11 1.6E-15 122.8 13.4 141 437-589 66-207 (347)
68 3oja_A Leucine-rich immune mol 99.2 1.1E-11 3.7E-16 133.9 8.8 144 437-589 99-245 (487)
69 1xku_A Decorin; proteoglycan, 99.2 4.3E-11 1.5E-15 122.4 12.8 146 437-589 121-271 (330)
70 2z63_A TOLL-like receptor 4, v 99.2 1.2E-11 4.3E-16 136.1 9.4 148 435-589 26-185 (570)
71 2v9t_B SLIT homolog 2 protein 99.2 2.7E-11 9.2E-16 116.4 10.4 130 435-568 30-163 (220)
72 2z81_A CD282 antigen, TOLL-lik 99.2 9.4E-12 3.2E-16 136.5 8.1 148 436-589 25-180 (549)
73 3o53_A Protein LRIM1, AGAP0063 99.2 1.3E-11 4.3E-16 125.7 8.0 143 437-589 99-245 (317)
74 4b8c_D Glucose-repressible alc 99.2 7.2E-12 2.5E-16 141.7 6.8 106 458-569 223-328 (727)
75 2z63_A TOLL-like receptor 4, v 99.2 1.9E-11 6.6E-16 134.5 9.5 127 458-589 27-157 (570)
76 1dce_A Protein (RAB geranylger 99.2 2.9E-11 9.9E-16 132.6 10.7 84 483-568 459-544 (567)
77 4glp_A Monocyte differentiatio 99.2 1.4E-11 4.8E-16 124.9 7.5 166 434-608 114-299 (310)
78 2je0_A Acidic leucine-rich nuc 99.2 1.5E-11 5.1E-16 110.2 6.9 125 435-566 15-149 (149)
79 2v70_A SLIT-2, SLIT homolog 2 99.2 4.5E-11 1.5E-15 114.8 10.4 129 435-568 30-164 (220)
80 3rgz_A Protein brassinosteroid 99.2 3.2E-11 1.1E-15 137.8 10.8 148 436-589 393-546 (768)
81 1xeu_A Internalin C; cellular 99.2 1.2E-10 4E-15 115.1 13.4 77 487-567 106-182 (263)
82 3oja_A Leucine-rich immune mol 99.2 2.8E-11 9.5E-16 130.7 9.5 118 486-607 119-241 (487)
83 1o6v_A Internalin A; bacterial 99.2 6.5E-11 2.2E-15 127.2 12.1 139 437-589 46-185 (466)
84 2xot_A Amphoterin-induced prot 99.2 3.3E-11 1.1E-15 124.9 9.4 147 436-589 38-197 (361)
85 2z81_A CD282 antigen, TOLL-lik 99.2 2.4E-11 8.2E-16 133.2 8.6 145 458-607 25-176 (549)
86 1ziw_A TOLL-like receptor 3; i 99.2 4.7E-11 1.6E-15 134.5 10.8 148 435-589 23-179 (680)
87 2xot_A Amphoterin-induced prot 99.2 5.5E-11 1.9E-15 123.2 10.5 126 458-589 38-171 (361)
88 2wfh_A SLIT homolog 2 protein 99.2 7.4E-11 2.5E-15 110.8 10.3 105 458-567 30-136 (193)
89 1dce_A Protein (RAB geranylger 99.2 3.8E-11 1.3E-15 131.7 9.4 97 488-589 442-541 (567)
90 1m9s_A Internalin B; cell inva 99.2 1.1E-10 3.9E-15 128.7 12.6 156 438-608 44-202 (605)
91 4fmz_A Internalin; leucine ric 99.2 2.5E-10 8.4E-15 117.4 14.3 159 437-608 155-316 (347)
92 4g8a_A TOLL-like receptor 4; l 99.2 3.3E-11 1.1E-15 134.2 8.2 143 435-583 50-199 (635)
93 1o6v_A Internalin A; bacterial 99.2 2.7E-10 9.3E-15 122.3 14.9 156 437-607 221-379 (466)
94 1a9n_A U2A', U2A'; complex (nu 99.1 5.8E-11 2E-15 109.7 7.5 125 436-568 18-151 (176)
95 2ft3_A Biglycan; proteoglycan, 99.1 1.5E-10 5.1E-15 118.5 11.3 142 438-588 34-179 (332)
96 2ast_B S-phase kinase-associat 99.1 3.7E-11 1.3E-15 123.0 6.5 168 435-608 91-277 (336)
97 3o53_A Protein LRIM1, AGAP0063 99.1 3E-11 1E-15 122.8 5.2 148 436-589 119-270 (317)
98 2z7x_B TOLL-like receptor 1, v 99.1 1.4E-10 4.9E-15 126.2 11.0 146 435-589 322-476 (520)
99 3j0a_A TOLL-like receptor 5; m 99.1 1.4E-10 4.8E-15 133.9 11.3 150 435-589 22-182 (844)
100 3j0a_A TOLL-like receptor 5; m 99.1 6.7E-11 2.3E-15 136.6 8.5 131 453-589 19-156 (844)
101 1w5s_A Origin recognition comp 99.1 2E-10 6.7E-15 121.2 11.5 140 123-267 19-188 (412)
102 4glp_A Monocyte differentiatio 99.1 1.8E-10 6.2E-15 116.6 10.7 149 438-589 92-259 (310)
103 3v47_A TOLL-like receptor 5B a 99.1 2.4E-10 8.2E-15 122.1 12.2 109 479-589 291-403 (455)
104 3v47_A TOLL-like receptor 5B a 99.1 1.9E-10 6.6E-15 122.8 11.4 169 437-608 212-400 (455)
105 3t6q_A CD180 antigen; protein- 99.1 8.1E-11 2.8E-15 130.7 8.7 147 435-589 31-187 (606)
106 3t6q_A CD180 antigen; protein- 99.1 1.9E-10 6.4E-15 127.7 11.5 149 453-606 27-180 (606)
107 2ast_B S-phase kinase-associat 99.1 2.2E-11 7.6E-16 124.6 3.6 165 438-608 71-252 (336)
108 2o6r_A Variable lymphocyte rec 99.1 2.1E-10 7.1E-15 106.0 9.8 107 458-568 27-135 (177)
109 1w8a_A SLIT protein; signaling 99.1 2E-10 7E-15 107.6 9.1 124 441-569 12-138 (192)
110 2z7x_B TOLL-like receptor 1, v 99.1 5.1E-10 1.8E-14 121.8 13.7 164 437-608 302-473 (520)
111 1ds9_A Outer arm dynein; leuci 99.1 6.5E-12 2.2E-16 118.5 -1.8 104 481-589 42-148 (198)
112 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 5.3E-10 1.8E-14 123.0 13.1 148 435-589 351-505 (562)
113 3bz5_A Internalin-J, INLJ; leu 99.1 4.7E-10 1.6E-14 120.0 12.3 153 436-607 41-195 (457)
114 2wfh_A SLIT homolog 2 protein 99.1 5.1E-10 1.8E-14 105.0 10.8 121 462-591 13-136 (193)
115 1ziw_A TOLL-like receptor 3; i 99.1 5.6E-10 1.9E-14 125.7 13.1 104 483-589 476-592 (680)
116 1wwl_A Monocyte differentiatio 99.1 3E-10 1E-14 115.1 9.8 144 437-589 149-304 (312)
117 1w8a_A SLIT protein; signaling 99.1 3.8E-10 1.3E-14 105.8 9.4 119 462-590 11-135 (192)
118 2r9u_A Variable lymphocyte rec 99.1 1.6E-10 5.5E-15 106.5 6.5 91 487-579 33-126 (174)
119 3bz5_A Internalin-J, INLJ; leu 99.0 1E-09 3.5E-14 117.3 13.4 152 436-608 63-217 (457)
120 2o6r_A Variable lymphocyte rec 99.0 8.5E-10 2.9E-14 101.8 11.0 103 486-590 27-133 (177)
121 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 1.1E-09 3.9E-14 120.3 12.9 163 438-608 332-502 (562)
122 2r9u_A Variable lymphocyte rec 99.0 9.2E-10 3.2E-14 101.4 9.8 97 490-590 15-114 (174)
123 1jl5_A Outer protein YOPM; leu 99.0 1.7E-09 5.8E-14 115.5 11.7 115 459-589 131-245 (454)
124 3g39_A Variable lymphocyte rec 99.0 1.6E-09 5.3E-14 99.4 9.7 101 461-568 11-113 (170)
125 3g39_A Variable lymphocyte rec 99.0 8.9E-10 3.1E-14 101.1 8.0 95 490-589 12-110 (170)
126 3cvr_A Invasion plasmid antige 99.0 1.6E-09 5.4E-14 118.4 11.1 131 437-589 100-238 (571)
127 3g06_A SSPH2 (leucine-rich rep 98.9 3.8E-09 1.3E-13 116.8 12.9 30 535-567 222-251 (622)
128 3cvr_A Invasion plasmid antige 98.9 2.6E-09 9E-14 116.7 10.9 149 437-607 80-234 (571)
129 2v1u_A Cell division control p 98.9 5.9E-09 2E-13 108.6 13.0 139 124-267 17-176 (387)
130 2qby_B CDC6 homolog 3, cell di 98.9 5.6E-09 1.9E-13 108.8 12.2 138 125-267 19-173 (384)
131 2ca6_A RAN GTPase-activating p 98.9 5.4E-10 1.9E-14 116.8 3.7 125 459-589 159-311 (386)
132 2ca6_A RAN GTPase-activating p 98.9 1E-09 3.5E-14 114.6 4.9 131 458-589 93-252 (386)
133 1jl5_A Outer protein YOPM; leu 98.9 8.5E-09 2.9E-13 110.1 12.0 121 437-575 131-253 (454)
134 1ds9_A Outer arm dynein; leuci 98.9 5.1E-11 1.7E-15 112.4 -4.9 120 458-587 47-180 (198)
135 2qby_A CDC6 homolog 1, cell di 98.9 4.6E-09 1.6E-13 109.3 9.6 141 122-267 16-172 (386)
136 2qen_A Walker-type ATPase; unk 98.8 8.6E-09 2.9E-13 105.8 11.1 134 121-267 7-173 (350)
137 1fnn_A CDC6P, cell division co 98.8 2.3E-08 7.7E-13 104.3 14.2 139 124-267 15-168 (389)
138 3g06_A SSPH2 (leucine-rich rep 98.8 1.6E-08 5.5E-13 111.7 12.5 100 436-552 60-159 (622)
139 4ay9_X Follicle-stimulating ho 98.8 1E-08 3.5E-13 105.5 9.6 97 489-588 156-253 (350)
140 2fna_A Conserved hypothetical 98.8 1.7E-08 5.7E-13 103.9 9.8 136 121-270 8-181 (357)
141 2chg_A Replication factor C sm 98.7 2.3E-08 7.8E-13 95.2 9.7 120 123-267 14-141 (226)
142 4ay9_X Follicle-stimulating ho 98.7 3.6E-08 1.2E-12 101.4 11.3 157 442-607 85-250 (350)
143 3qfl_A MLA10; coiled-coil, (CC 98.7 6.8E-09 2.3E-13 87.9 4.3 83 4-97 2-84 (115)
144 2ifg_A High affinity nerve gro 98.7 3.7E-08 1.3E-12 101.1 9.6 89 479-568 24-114 (347)
145 1njg_A DNA polymerase III subu 98.7 1.2E-07 4E-12 91.5 12.5 138 123-267 20-165 (250)
146 2ifg_A High affinity nerve gro 98.7 3.6E-08 1.2E-12 101.2 8.7 85 458-547 30-116 (347)
147 3goz_A Leucine-rich repeat-con 98.6 8.5E-09 2.9E-13 106.7 3.2 153 437-589 80-261 (362)
148 3goz_A Leucine-rich repeat-con 98.6 2.4E-08 8.2E-13 103.3 6.6 149 438-589 52-233 (362)
149 1sxj_B Activator 1 37 kDa subu 98.5 1.7E-07 6E-12 94.8 7.6 118 123-267 18-146 (323)
150 3ogk_B Coronatine-insensitive 98.4 1.7E-07 6E-12 103.3 5.5 127 437-566 112-252 (592)
151 1z7x_W Ribonuclease inhibitor; 98.4 6.5E-08 2.2E-12 103.3 1.6 152 437-589 170-349 (461)
152 1z7x_W Ribonuclease inhibitor; 98.4 6.4E-08 2.2E-12 103.3 1.3 154 436-590 2-179 (461)
153 1iqp_A RFCS; clamp loader, ext 98.3 5.4E-07 1.9E-11 91.4 7.3 124 122-267 21-149 (327)
154 1jbk_A CLPB protein; beta barr 98.3 9.1E-07 3.1E-11 81.8 7.4 46 124-171 20-65 (195)
155 3ogk_B Coronatine-insensitive 98.3 5.7E-07 1.9E-11 99.2 6.3 85 458-543 163-252 (592)
156 3un9_A NLR family member X1; l 98.2 1.5E-06 5E-11 90.0 6.7 127 437-568 101-250 (372)
157 3te6_A Regulatory protein SIR3 98.2 1E-05 3.4E-10 81.1 12.3 110 127-242 21-144 (318)
158 3sb4_A Hypothetical leucine ri 98.2 3E-06 1E-10 86.1 8.6 96 509-608 225-326 (329)
159 3un9_A NLR family member X1; l 98.2 7.6E-07 2.6E-11 92.2 4.1 149 437-589 72-247 (372)
160 2p1m_B Transport inhibitor res 98.2 5.4E-07 1.8E-11 99.3 3.1 127 437-566 105-244 (594)
161 3h4m_A Proteasome-activating n 98.2 4.8E-06 1.6E-10 82.7 9.4 57 121-179 12-79 (285)
162 2p65_A Hypothetical protein PF 98.1 4E-06 1.4E-10 77.1 7.2 46 124-171 20-65 (187)
163 1jr3_A DNA polymerase III subu 98.0 1.8E-05 6.2E-10 81.7 9.8 138 124-267 14-158 (373)
164 2chq_A Replication factor C sm 98.0 4.3E-06 1.5E-10 84.3 4.8 121 123-267 14-141 (319)
165 2p1m_B Transport inhibitor res 97.9 7.2E-07 2.5E-11 98.3 -1.9 126 458-589 104-243 (594)
166 3n70_A Transport activator; si 97.9 1.5E-05 5.1E-10 70.5 6.6 46 127-172 2-47 (145)
167 2qz4_A Paraplegin; AAA+, SPG7, 97.9 4.2E-05 1.4E-09 74.7 10.1 48 124-171 4-61 (262)
168 3u61_B DNA polymerase accessor 97.8 5E-05 1.7E-09 76.8 10.2 115 123-267 23-145 (324)
169 3eie_A Vacuolar protein sortin 97.8 7.1E-05 2.4E-09 75.7 10.8 54 124-179 16-79 (322)
170 3syl_A Protein CBBX; photosynt 97.8 1.7E-05 5.9E-10 79.6 6.1 121 127-267 32-178 (309)
171 3d8b_A Fidgetin-like protein 1 97.8 7.9E-05 2.7E-09 76.5 10.8 50 122-171 80-139 (357)
172 3sb4_A Hypothetical leucine ri 97.8 3.1E-05 1.1E-09 78.5 7.7 100 484-587 223-327 (329)
173 3ec2_A DNA replication protein 97.8 3.7E-05 1.3E-09 70.6 7.0 116 132-267 20-142 (180)
174 2z4s_A Chromosomal replication 97.8 8.3E-05 2.8E-09 78.5 10.3 125 125-267 104-236 (440)
175 3co5_A Putative two-component 97.7 2.2E-05 7.5E-10 69.2 4.8 47 126-172 4-50 (143)
176 2w58_A DNAI, primosome compone 97.7 3.7E-05 1.3E-09 72.0 6.5 61 125-187 24-90 (202)
177 1io0_A Tropomodulin; LRR prote 97.7 1.6E-05 5.5E-10 73.5 3.7 109 458-567 35-161 (185)
178 1hqc_A RUVB; extended AAA-ATPa 97.7 5.2E-05 1.8E-09 76.6 7.7 48 124-171 10-60 (324)
179 1sxj_D Activator 1 41 kDa subu 97.7 5.1E-05 1.7E-09 77.6 7.5 134 122-267 33-172 (353)
180 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.00038 1.3E-08 70.2 13.7 48 124-171 10-67 (322)
181 1sxj_E Activator 1 40 kDa subu 97.7 0.00013 4.4E-09 74.7 10.1 48 122-171 10-58 (354)
182 3bos_A Putative DNA replicatio 97.7 1.8E-05 6.1E-10 76.1 3.3 62 123-188 25-89 (242)
183 2qp9_X Vacuolar protein sortin 97.6 0.00016 5.6E-09 74.0 10.2 54 123-178 48-111 (355)
184 3pvs_A Replication-associated 97.6 9.2E-05 3.1E-09 78.2 8.5 53 123-179 23-78 (447)
185 2ra8_A Uncharacterized protein 97.6 8.7E-05 3E-09 76.2 7.9 127 436-568 171-318 (362)
186 3b9p_A CG5977-PA, isoform A; A 97.6 0.00027 9.1E-09 70.4 10.9 56 122-179 17-82 (297)
187 3rw6_A Nuclear RNA export fact 97.6 5E-05 1.7E-09 74.2 5.2 81 483-565 166-259 (267)
188 3cf0_A Transitional endoplasmi 97.6 0.00051 1.7E-08 68.6 12.5 51 124-176 13-74 (301)
189 3vfd_A Spastin; ATPase, microt 97.6 0.00032 1.1E-08 72.8 11.4 49 123-171 112-170 (389)
190 1d2n_A N-ethylmaleimide-sensit 97.6 0.00022 7.7E-09 70.0 9.6 46 126-171 33-86 (272)
191 3e4g_A ATP synthase subunit S, 97.6 8.9E-05 3.1E-09 67.2 6.1 80 488-569 62-150 (176)
192 1io0_A Tropomodulin; LRR prote 97.5 3.5E-05 1.2E-09 71.1 3.3 111 478-589 27-159 (185)
193 3pfi_A Holliday junction ATP-d 97.5 0.00024 8.1E-09 72.2 9.8 54 124-179 27-83 (338)
194 3uk6_A RUVB-like 2; hexameric 97.5 0.00063 2.1E-08 69.9 12.9 47 125-171 43-92 (368)
195 2zan_A Vacuolar protein sortin 97.5 0.00034 1.2E-08 73.9 10.7 50 122-171 130-189 (444)
196 1lv7_A FTSH; alpha/beta domain 97.5 0.00038 1.3E-08 67.7 10.2 49 123-171 9-67 (257)
197 1sxj_A Activator 1 95 kDa subu 97.5 0.00023 7.8E-09 76.9 9.2 133 122-267 35-188 (516)
198 1l8q_A Chromosomal replication 97.4 0.00021 7.1E-09 72.2 7.7 124 124-267 9-140 (324)
199 1sxj_C Activator 1 40 kDa subu 97.4 0.00028 9.7E-09 71.8 8.6 47 123-171 22-68 (340)
200 2ra8_A Uncharacterized protein 97.4 7.2E-05 2.5E-09 76.8 3.6 125 458-589 171-315 (362)
201 2bjv_A PSP operon transcriptio 97.3 0.00029 9.8E-09 68.9 7.1 47 126-172 6-52 (265)
202 4fcw_A Chaperone protein CLPB; 97.3 0.00023 7.8E-09 71.3 6.1 46 126-171 17-69 (311)
203 3rw6_A Nuclear RNA export fact 97.2 0.00012 3.9E-09 71.6 2.7 76 492-569 148-232 (267)
204 2kjq_A DNAA-related protein; s 97.2 0.00029 1E-08 62.4 4.8 23 149-171 36-58 (149)
205 2ce7_A Cell division protein F 97.2 0.0012 4.3E-08 69.8 10.0 48 124-171 14-71 (476)
206 3hu3_A Transitional endoplasmi 97.2 0.00071 2.4E-08 72.1 8.2 52 125-178 203-265 (489)
207 4fdw_A Leucine rich hypothetic 97.1 0.0011 3.7E-08 69.1 9.0 97 487-589 248-353 (401)
208 1ojl_A Transcriptional regulat 97.1 0.00035 1.2E-08 69.9 4.9 46 126-171 2-47 (304)
209 3pxg_A Negative regulator of g 97.1 0.00099 3.4E-08 70.9 8.5 45 125-171 179-223 (468)
210 2gno_A DNA polymerase III, gam 97.1 0.0027 9.2E-08 63.3 11.0 116 130-267 1-121 (305)
211 1a5t_A Delta prime, HOLB; zinc 97.1 0.0036 1.2E-07 63.4 12.0 112 132-267 8-147 (334)
212 2r62_A Cell division protease 97.0 0.00016 5.6E-09 70.8 1.8 49 123-171 8-66 (268)
213 4fdw_A Leucine rich hypothetic 97.0 0.0018 6.2E-08 67.4 9.7 124 460-589 158-308 (401)
214 1qvr_A CLPB protein; coiled co 97.0 0.0011 3.8E-08 76.1 8.6 45 125-171 169-213 (854)
215 2cvh_A DNA repair and recombin 97.0 0.0023 7.9E-08 60.2 9.2 84 149-241 20-116 (220)
216 2qgz_A Helicase loader, putati 96.9 0.00043 1.5E-08 69.4 3.8 53 133-187 135-189 (308)
217 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0072 2.5E-07 68.4 13.5 46 124-171 184-229 (758)
218 4b4t_L 26S protease subunit RP 96.8 0.0028 9.6E-08 66.1 9.2 54 124-179 179-243 (437)
219 3e4g_A ATP synthase subunit S, 96.8 0.00066 2.3E-08 61.5 3.9 85 458-548 60-154 (176)
220 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00091 3.1E-08 66.4 5.2 69 149-241 123-193 (331)
221 3t15_A Ribulose bisphosphate c 96.8 0.0018 6.1E-08 64.3 7.3 27 148-176 35-61 (293)
222 4b4t_J 26S protease regulatory 96.8 0.0024 8.2E-08 65.6 8.2 54 124-179 146-210 (405)
223 4b4t_H 26S protease regulatory 96.8 0.0029 9.8E-08 66.0 8.6 53 125-179 208-271 (467)
224 4b4t_K 26S protease regulatory 96.7 0.0037 1.3E-07 65.0 8.8 54 124-179 170-234 (428)
225 3qfl_A MLA10; coiled-coil, (CC 96.7 0.0026 9E-08 53.3 6.3 49 5-58 24-77 (115)
226 4b4t_M 26S protease regulatory 96.7 0.0023 7.8E-08 66.7 7.0 54 124-179 179-243 (434)
227 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0083 2.8E-07 63.8 10.6 51 121-171 26-86 (499)
228 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0043 1.5E-07 58.8 7.7 115 150-267 24-167 (235)
229 3pxi_A Negative regulator of g 96.5 0.0015 5.2E-08 74.0 5.0 46 126-171 491-543 (758)
230 3pxi_A Negative regulator of g 96.5 0.0039 1.3E-07 70.5 8.4 45 125-171 179-223 (758)
231 4b4t_I 26S protease regulatory 96.5 0.0059 2E-07 63.0 8.2 55 123-179 179-244 (437)
232 2c9o_A RUVB-like 1; hexameric 96.4 0.0043 1.5E-07 65.7 7.4 48 124-171 35-85 (456)
233 3cf2_A TER ATPase, transitiona 96.4 0.0056 1.9E-07 68.7 8.4 95 125-241 203-308 (806)
234 1ixz_A ATP-dependent metallopr 96.4 0.004 1.4E-07 60.2 6.0 48 124-171 14-71 (254)
235 1g5t_A COB(I)alamin adenosyltr 96.3 0.0034 1.2E-07 57.7 4.7 116 150-267 29-162 (196)
236 1iy2_A ATP-dependent metallopr 96.2 0.0045 1.5E-07 60.8 5.8 49 123-171 37-95 (278)
237 3rfe_A Platelet glycoprotein I 96.2 0.0063 2.1E-07 52.3 5.8 54 491-546 12-67 (130)
238 2x8a_A Nuclear valosin-contain 96.2 0.01 3.5E-07 58.1 8.0 47 124-171 8-66 (274)
239 1ypw_A Transitional endoplasmi 96.2 0.0054 1.8E-07 69.7 6.7 53 125-179 203-266 (806)
240 1in4_A RUVB, holliday junction 96.2 0.0032 1.1E-07 63.8 4.3 48 124-171 23-73 (334)
241 3c8u_A Fructokinase; YP_612366 96.0 0.0048 1.7E-07 57.7 4.6 38 134-171 7-44 (208)
242 4a74_A DNA repair and recombin 96.0 0.019 6.5E-07 54.2 8.9 23 149-171 25-47 (231)
243 1qvr_A CLPB protein; coiled co 96.0 0.011 3.9E-07 67.6 8.2 46 126-171 558-610 (854)
244 3m6a_A ATP-dependent protease 96.0 0.025 8.4E-07 61.2 10.4 52 126-179 81-136 (543)
245 1vma_A Cell division protein F 95.9 0.03 1E-06 55.6 10.2 24 148-171 103-126 (306)
246 1rz3_A Hypothetical protein rb 95.9 0.0073 2.5E-07 56.1 5.3 41 131-171 3-44 (201)
247 1n0w_A DNA repair protein RAD5 95.9 0.018 6.1E-07 54.9 8.1 92 149-241 24-130 (243)
248 1ofh_A ATP-dependent HSL prote 95.9 0.0039 1.3E-07 62.0 3.4 46 126-171 15-72 (310)
249 2b8t_A Thymidine kinase; deoxy 95.9 0.0043 1.5E-07 58.6 3.5 111 149-267 12-125 (223)
250 3hr8_A Protein RECA; alpha and 95.7 0.0096 3.3E-07 60.4 5.6 100 136-240 47-149 (356)
251 2ck3_D ATP synthase subunit be 95.7 0.016 5.5E-07 60.5 7.3 62 137-201 142-207 (482)
252 1qhx_A CPT, protein (chloramph 95.7 0.0051 1.7E-07 55.7 3.2 22 150-171 4-25 (178)
253 3ice_A Transcription terminati 95.6 0.012 4E-07 59.8 5.7 51 137-190 163-215 (422)
254 3kb2_A SPBC2 prophage-derived 95.6 0.0054 1.8E-07 55.1 3.0 22 150-171 2-23 (173)
255 1sky_E F1-ATPase, F1-ATP synth 95.6 0.022 7.5E-07 59.6 7.9 49 150-200 152-204 (473)
256 1fx0_B ATP synthase beta chain 95.6 0.023 7.8E-07 59.6 7.9 101 138-241 155-277 (498)
257 3lw7_A Adenylate kinase relate 95.6 0.0058 2E-07 54.9 3.1 20 150-169 2-21 (179)
258 3t61_A Gluconokinase; PSI-biol 95.5 0.05 1.7E-06 50.2 9.4 23 149-171 18-40 (202)
259 1odf_A YGR205W, hypothetical 3 95.5 0.013 4.3E-07 57.9 5.5 26 146-171 28-53 (290)
260 1j8m_F SRP54, signal recogniti 95.5 0.09 3.1E-06 51.9 11.6 23 149-171 98-120 (297)
261 3hws_A ATP-dependent CLP prote 95.5 0.011 3.7E-07 60.6 4.9 45 127-171 16-73 (363)
262 3kl4_A SRP54, signal recogniti 95.5 0.056 1.9E-06 56.2 10.3 24 148-171 96-119 (433)
263 1v5w_A DMC1, meiotic recombina 95.4 0.074 2.5E-06 53.8 10.8 53 138-190 111-167 (343)
264 1zp6_A Hypothetical protein AT 95.4 0.008 2.7E-07 55.1 3.3 23 149-171 9-31 (191)
265 1r6b_X CLPA protein; AAA+, N-t 95.3 0.021 7.1E-07 64.6 7.2 46 126-171 458-510 (758)
266 3vaa_A Shikimate kinase, SK; s 95.3 0.0076 2.6E-07 55.8 3.0 23 149-171 25-47 (199)
267 2r44_A Uncharacterized protein 95.3 0.012 4.2E-07 59.2 4.8 48 126-179 27-74 (331)
268 3trf_A Shikimate kinase, SK; a 95.3 0.0086 2.9E-07 54.6 3.0 23 149-171 5-27 (185)
269 2ga8_A Hypothetical 39.9 kDa p 95.2 0.011 3.8E-07 59.5 4.0 49 129-179 2-52 (359)
270 2z43_A DNA repair and recombin 95.2 0.033 1.1E-06 55.9 7.6 91 149-240 107-213 (324)
271 1kag_A SKI, shikimate kinase I 95.2 0.0076 2.6E-07 54.3 2.5 22 150-171 5-26 (173)
272 3bh0_A DNAB-like replicative h 95.2 0.1 3.5E-06 52.0 11.0 52 149-202 68-119 (315)
273 1ly1_A Polynucleotide kinase; 95.2 0.0099 3.4E-07 53.8 3.2 22 150-171 3-24 (181)
274 1xp8_A RECA protein, recombina 95.2 0.031 1.1E-06 57.0 7.2 101 135-240 59-162 (366)
275 1knq_A Gluconate kinase; ALFA/ 95.1 0.014 4.7E-07 52.7 4.0 23 149-171 8-30 (175)
276 2zr9_A Protein RECA, recombina 95.1 0.039 1.3E-06 55.9 7.6 101 135-240 46-149 (349)
277 3a00_A Guanylate kinase, GMP k 95.1 0.011 3.9E-07 54.0 3.3 22 150-171 2-23 (186)
278 1kgd_A CASK, peripheral plasma 95.1 0.01 3.6E-07 54.0 3.0 22 150-171 6-27 (180)
279 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.025 8.4E-07 60.3 6.3 42 126-171 22-63 (500)
280 3vr4_D V-type sodium ATPase su 95.0 0.017 5.9E-07 59.9 4.8 89 150-240 152-258 (465)
281 3jvv_A Twitching mobility prot 95.0 0.058 2E-06 54.7 8.6 105 150-267 124-230 (356)
282 3rfe_A Platelet glycoprotein I 95.0 0.028 9.7E-07 48.1 5.3 53 513-568 11-66 (130)
283 3uie_A Adenylyl-sulfate kinase 95.0 0.012 4.2E-07 54.4 3.3 23 149-171 25-47 (200)
284 1zuh_A Shikimate kinase; alpha 95.0 0.012 4.1E-07 52.7 3.0 24 148-171 6-29 (168)
285 3tr0_A Guanylate kinase, GMP k 94.8 0.014 4.7E-07 54.1 3.2 22 150-171 8-29 (205)
286 2bdt_A BH3686; alpha-beta prot 94.8 0.015 5.1E-07 53.2 3.4 22 150-171 3-24 (189)
287 4gp7_A Metallophosphoesterase; 94.8 0.014 4.9E-07 52.6 3.1 23 149-171 9-31 (171)
288 4eun_A Thermoresistant glucoki 94.8 0.014 4.8E-07 54.0 3.2 23 149-171 29-51 (200)
289 3iij_A Coilin-interacting nucl 94.8 0.012 4.2E-07 53.4 2.6 23 149-171 11-33 (180)
290 3tau_A Guanylate kinase, GMP k 94.8 0.019 6.5E-07 53.6 3.9 23 149-171 8-30 (208)
291 1nks_A Adenylate kinase; therm 94.8 0.015 5.1E-07 53.2 3.1 22 150-171 2-23 (194)
292 2if2_A Dephospho-COA kinase; a 94.7 0.014 4.8E-07 54.1 3.0 22 150-171 2-23 (204)
293 1um8_A ATP-dependent CLP prote 94.7 0.025 8.4E-07 58.1 5.0 51 127-179 22-100 (376)
294 2jaq_A Deoxyguanosine kinase; 94.7 0.015 5.1E-07 53.7 3.1 21 151-171 2-22 (205)
295 2px0_A Flagellar biosynthesis 94.7 0.06 2.1E-06 53.2 7.6 23 149-171 105-127 (296)
296 2qt1_A Nicotinamide riboside k 94.7 0.018 6.3E-07 53.5 3.7 24 148-171 20-43 (207)
297 1kht_A Adenylate kinase; phosp 94.7 0.015 5.2E-07 53.1 3.0 22 150-171 4-25 (192)
298 1jjv_A Dephospho-COA kinase; P 94.7 0.017 5.8E-07 53.7 3.4 22 150-171 3-24 (206)
299 2rhm_A Putative kinase; P-loop 94.7 0.018 6E-07 52.7 3.5 23 149-171 5-27 (193)
300 2i1q_A DNA repair and recombin 94.7 0.051 1.7E-06 54.4 7.1 102 138-240 87-214 (322)
301 1g8p_A Magnesium-chelatase 38 94.7 0.018 6.1E-07 58.3 3.7 48 122-171 20-67 (350)
302 1nlf_A Regulatory protein REPA 94.7 0.071 2.4E-06 52.1 8.0 22 150-171 31-52 (279)
303 1u94_A RECA protein, recombina 94.6 0.043 1.5E-06 55.8 6.5 101 135-240 48-151 (356)
304 1uf9_A TT1252 protein; P-loop, 94.6 0.018 6.3E-07 53.1 3.5 24 148-171 7-30 (203)
305 1via_A Shikimate kinase; struc 94.6 0.014 4.7E-07 52.8 2.5 22 150-171 5-26 (175)
306 2xxa_A Signal recognition part 94.6 0.32 1.1E-05 50.7 13.2 24 148-171 99-122 (433)
307 3io5_A Recombination and repai 94.6 0.084 2.9E-06 52.2 8.2 86 151-241 30-122 (333)
308 1y63_A LMAJ004144AAA protein; 94.6 0.019 6.4E-07 52.4 3.4 23 149-171 10-32 (184)
309 2j41_A Guanylate kinase; GMP, 94.6 0.017 5.7E-07 53.6 3.1 23 149-171 6-28 (207)
310 1uj2_A Uridine-cytidine kinase 94.6 0.019 6.3E-07 55.4 3.5 24 148-171 21-44 (252)
311 3asz_A Uridine kinase; cytidin 94.6 0.02 6.7E-07 53.4 3.5 23 149-171 6-28 (211)
312 3tqc_A Pantothenate kinase; bi 94.6 0.029 1E-06 56.0 4.9 43 129-171 70-114 (321)
313 1ukz_A Uridylate kinase; trans 94.6 0.02 7E-07 52.9 3.6 24 148-171 14-37 (203)
314 1cke_A CK, MSSA, protein (cyti 94.5 0.017 5.8E-07 54.5 3.1 22 150-171 6-27 (227)
315 3tlx_A Adenylate kinase 2; str 94.5 0.026 9E-07 54.0 4.4 39 133-171 13-51 (243)
316 1ex7_A Guanylate kinase; subst 94.5 0.017 5.7E-07 52.9 2.8 29 150-180 2-30 (186)
317 2c95_A Adenylate kinase 1; tra 94.5 0.02 6.9E-07 52.5 3.4 23 149-171 9-31 (196)
318 2iyv_A Shikimate kinase, SK; t 94.5 0.014 4.8E-07 53.1 2.3 22 150-171 3-24 (184)
319 1ye8_A Protein THEP1, hypothet 94.5 0.02 6.8E-07 52.1 3.2 22 151-172 2-23 (178)
320 3e70_C DPA, signal recognition 94.5 0.075 2.6E-06 53.3 7.7 24 148-171 128-151 (328)
321 4a1f_A DNAB helicase, replicat 94.5 0.063 2.2E-06 53.9 7.1 51 150-202 47-97 (338)
322 2qor_A Guanylate kinase; phosp 94.5 0.015 5.3E-07 54.0 2.5 23 149-171 12-34 (204)
323 2ze6_A Isopentenyl transferase 94.4 0.019 6.6E-07 55.4 3.2 22 150-171 2-23 (253)
324 1tev_A UMP-CMP kinase; ploop, 94.4 0.02 6.9E-07 52.4 3.2 23 149-171 3-25 (196)
325 2grj_A Dephospho-COA kinase; T 94.4 0.022 7.4E-07 52.5 3.3 24 148-171 11-34 (192)
326 3cm0_A Adenylate kinase; ATP-b 94.4 0.021 7.3E-07 51.9 3.2 22 150-171 5-26 (186)
327 2yvu_A Probable adenylyl-sulfa 94.4 0.022 7.4E-07 52.0 3.2 24 148-171 12-35 (186)
328 1gvn_B Zeta; postsegregational 94.4 0.039 1.3E-06 54.3 5.3 24 148-171 32-55 (287)
329 2vli_A Antibiotic resistance p 94.3 0.017 5.7E-07 52.5 2.4 23 149-171 5-27 (183)
330 1e6c_A Shikimate kinase; phosp 94.3 0.018 6E-07 51.8 2.5 22 150-171 3-24 (173)
331 2bwj_A Adenylate kinase 5; pho 94.3 0.02 7E-07 52.6 3.0 23 149-171 12-34 (199)
332 2hf9_A Probable hydrogenase ni 94.3 0.039 1.3E-06 51.9 4.9 37 134-172 25-61 (226)
333 3fwy_A Light-independent proto 94.3 0.025 8.4E-07 56.5 3.6 24 148-171 47-70 (314)
334 4gt6_A Cell surface protein; l 94.3 0.099 3.4E-06 53.8 8.4 104 481-589 259-365 (394)
335 2bbw_A Adenylate kinase 4, AK4 94.2 0.025 8.4E-07 54.3 3.4 23 149-171 27-49 (246)
336 2pt5_A Shikimate kinase, SK; a 94.2 0.023 8E-07 50.7 3.1 21 151-171 2-22 (168)
337 1qf9_A UMP/CMP kinase, protein 94.2 0.024 8.1E-07 51.8 3.2 23 149-171 6-28 (194)
338 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.025 8.6E-07 54.8 3.5 23 149-171 4-26 (260)
339 2p5t_B PEZT; postsegregational 94.2 0.038 1.3E-06 53.3 4.7 24 148-171 31-54 (253)
340 2c61_A A-type ATP synthase non 94.2 0.044 1.5E-06 57.2 5.3 90 150-239 153-258 (469)
341 3p32_A Probable GTPase RV1496/ 94.1 0.046 1.6E-06 55.6 5.4 38 134-171 64-101 (355)
342 1lvg_A Guanylate kinase, GMP k 94.1 0.021 7.1E-07 52.9 2.6 22 150-171 5-26 (198)
343 2pbr_A DTMP kinase, thymidylat 94.1 0.025 8.4E-07 51.8 3.1 21 151-171 2-22 (195)
344 1znw_A Guanylate kinase, GMP k 94.1 0.025 8.7E-07 52.6 3.2 22 150-171 21-42 (207)
345 2plr_A DTMP kinase, probable t 94.1 0.026 8.8E-07 52.5 3.2 22 150-171 5-26 (213)
346 2wsm_A Hydrogenase expression/ 94.1 0.035 1.2E-06 52.0 4.2 40 130-171 13-52 (221)
347 1xjc_A MOBB protein homolog; s 94.1 0.027 9.3E-07 50.5 3.1 24 148-171 3-26 (169)
348 4fs7_A Uncharacterized protein 94.0 0.14 4.7E-06 52.8 8.9 138 458-607 252-392 (394)
349 4e22_A Cytidylate kinase; P-lo 94.0 0.028 9.4E-07 54.3 3.3 23 149-171 27-49 (252)
350 1g41_A Heat shock protein HSLU 94.0 0.036 1.2E-06 57.8 4.3 52 126-179 15-78 (444)
351 2cdn_A Adenylate kinase; phosp 94.0 0.027 9.1E-07 52.1 3.1 23 149-171 20-42 (201)
352 3aez_A Pantothenate kinase; tr 94.0 0.031 1.1E-06 55.7 3.7 24 148-171 89-112 (312)
353 2jeo_A Uridine-cytidine kinase 93.9 0.034 1.1E-06 53.3 3.8 23 149-171 25-47 (245)
354 1htw_A HI0065; nucleotide-bind 93.9 0.033 1.1E-06 49.5 3.4 23 149-171 33-55 (158)
355 3ney_A 55 kDa erythrocyte memb 93.9 0.033 1.1E-06 51.3 3.5 23 149-171 19-41 (197)
356 1pzn_A RAD51, DNA repair and r 93.9 0.096 3.3E-06 53.1 7.2 95 148-242 130-243 (349)
357 3nwj_A ATSK2; P loop, shikimat 93.9 0.024 8.3E-07 54.5 2.5 22 150-171 49-70 (250)
358 3dm5_A SRP54, signal recogniti 93.8 0.092 3.1E-06 54.7 7.0 24 148-171 99-122 (443)
359 3gqb_B V-type ATP synthase bet 93.8 0.04 1.4E-06 57.2 4.2 91 150-240 148-261 (464)
360 2f6r_A COA synthase, bifunctio 93.8 0.035 1.2E-06 54.5 3.6 24 148-171 74-97 (281)
361 2wwf_A Thymidilate kinase, put 93.8 0.03 1E-06 52.1 3.0 23 149-171 10-32 (212)
362 1z6g_A Guanylate kinase; struc 93.8 0.027 9.1E-07 53.0 2.6 22 150-171 24-45 (218)
363 1s96_A Guanylate kinase, GMP k 93.7 0.039 1.3E-06 52.0 3.7 23 149-171 16-38 (219)
364 2pez_A Bifunctional 3'-phospho 93.7 0.034 1.2E-06 50.3 3.2 23 149-171 5-27 (179)
365 2z0h_A DTMP kinase, thymidylat 93.7 0.033 1.1E-06 51.1 3.1 21 151-171 2-22 (197)
366 1nn5_A Similar to deoxythymidy 93.7 0.036 1.2E-06 51.6 3.4 23 149-171 9-31 (215)
367 2ewv_A Twitching motility prot 93.7 0.09 3.1E-06 53.8 6.6 105 149-267 136-243 (372)
368 3lda_A DNA repair protein RAD5 93.6 0.18 6.1E-06 52.0 8.8 67 137-203 166-237 (400)
369 3tif_A Uncharacterized ABC tra 93.6 0.052 1.8E-06 51.7 4.4 33 150-185 32-64 (235)
370 2cbz_A Multidrug resistance-as 93.6 0.055 1.9E-06 51.6 4.6 22 150-171 32-53 (237)
371 3bgw_A DNAB-like replicative h 93.6 0.25 8.4E-06 51.8 9.9 51 149-201 197-247 (444)
372 1aky_A Adenylate kinase; ATP:A 93.6 0.038 1.3E-06 51.9 3.3 23 149-171 4-26 (220)
373 1zd8_A GTP:AMP phosphotransfer 93.6 0.037 1.3E-06 52.2 3.3 23 149-171 7-29 (227)
374 2pcj_A ABC transporter, lipopr 93.6 0.053 1.8E-06 51.2 4.3 22 150-171 31-52 (224)
375 1vht_A Dephospho-COA kinase; s 93.6 0.042 1.4E-06 51.5 3.6 23 149-171 4-26 (218)
376 2onk_A Molybdate/tungstate ABC 93.5 0.059 2E-06 51.4 4.7 22 150-171 25-46 (240)
377 2ffh_A Protein (FFH); SRP54, s 93.5 0.16 5.5E-06 52.7 8.2 23 149-171 98-120 (425)
378 3l0o_A Transcription terminati 93.5 0.029 9.9E-07 56.9 2.5 52 136-190 163-216 (427)
379 3gfo_A Cobalt import ATP-bindi 93.5 0.054 1.8E-06 52.9 4.4 22 150-171 35-56 (275)
380 2j37_W Signal recognition part 93.5 0.12 4.2E-06 54.8 7.5 37 135-171 80-123 (504)
381 2v54_A DTMP kinase, thymidylat 93.5 0.036 1.2E-06 51.2 3.0 22 150-171 5-26 (204)
382 1gtv_A TMK, thymidylate kinase 93.5 0.021 7.1E-07 53.3 1.4 22 150-171 1-22 (214)
383 3fb4_A Adenylate kinase; psych 93.5 0.037 1.3E-06 51.7 3.1 21 151-171 2-22 (216)
384 3zvl_A Bifunctional polynucleo 93.5 0.21 7.1E-06 51.9 9.1 24 148-171 257-280 (416)
385 1zak_A Adenylate kinase; ATP:A 93.4 0.035 1.2E-06 52.2 2.9 23 149-171 5-27 (222)
386 3lnc_A Guanylate kinase, GMP k 93.4 0.029 1E-06 53.2 2.2 22 150-171 28-50 (231)
387 1tue_A Replication protein E1; 93.4 0.2 6.8E-06 46.2 7.7 39 132-171 42-80 (212)
388 1m7g_A Adenylylsulfate kinase; 93.4 0.042 1.4E-06 51.3 3.3 23 149-171 25-47 (211)
389 3umf_A Adenylate kinase; rossm 93.4 0.047 1.6E-06 51.2 3.5 25 147-171 27-51 (217)
390 1rj9_A FTSY, signal recognitio 93.3 0.048 1.6E-06 54.1 3.7 24 148-171 101-124 (304)
391 1b0u_A Histidine permease; ABC 93.3 0.061 2.1E-06 52.1 4.4 22 150-171 33-54 (262)
392 3dl0_A Adenylate kinase; phosp 93.3 0.041 1.4E-06 51.5 3.1 21 151-171 2-22 (216)
393 2f1r_A Molybdopterin-guanine d 93.3 0.029 9.8E-07 50.6 1.9 23 149-171 2-24 (171)
394 1zu4_A FTSY; GTPase, signal re 93.3 0.082 2.8E-06 52.8 5.5 24 148-171 104-127 (320)
395 3ake_A Cytidylate kinase; CMP 93.3 0.041 1.4E-06 50.9 3.1 21 151-171 4-24 (208)
396 2ehv_A Hypothetical protein PH 93.3 0.041 1.4E-06 52.5 3.2 23 149-171 30-52 (251)
397 2i3b_A HCR-ntpase, human cance 93.3 0.037 1.2E-06 50.8 2.6 21 151-171 3-23 (189)
398 1ls1_A Signal recognition part 93.3 0.13 4.5E-06 50.7 6.8 23 149-171 98-120 (295)
399 3oaa_A ATP synthase subunit al 93.2 0.15 5.1E-06 53.4 7.4 86 150-241 163-265 (513)
400 3b85_A Phosphate starvation-in 93.2 0.075 2.6E-06 49.5 4.7 22 150-171 23-44 (208)
401 2qi9_C Vitamin B12 import ATP- 93.1 0.071 2.4E-06 51.2 4.5 32 150-185 27-58 (249)
402 2r6a_A DNAB helicase, replicat 93.1 0.26 9E-06 51.8 9.3 49 149-199 203-252 (454)
403 4h09_A Hypothetical leucine ri 93.1 0.26 8.8E-06 50.3 9.0 58 508-566 261-319 (379)
404 1cr0_A DNA primase/helicase; R 93.1 0.096 3.3E-06 51.6 5.6 51 150-202 36-87 (296)
405 2pze_A Cystic fibrosis transme 93.1 0.071 2.4E-06 50.5 4.4 22 150-171 35-56 (229)
406 3k1j_A LON protease, ATP-depen 93.0 0.094 3.2E-06 57.4 5.9 43 125-171 40-82 (604)
407 1ji0_A ABC transporter; ATP bi 93.0 0.073 2.5E-06 50.8 4.4 22 150-171 33-54 (240)
408 1sq5_A Pantothenate kinase; P- 93.0 0.054 1.9E-06 53.9 3.6 24 148-171 79-102 (308)
409 2dr3_A UPF0273 protein PH0284; 93.0 0.076 2.6E-06 50.5 4.6 46 149-196 23-68 (247)
410 2olj_A Amino acid ABC transpor 93.0 0.073 2.5E-06 51.6 4.4 23 149-171 50-72 (263)
411 2ff7_A Alpha-hemolysin translo 93.0 0.074 2.5E-06 51.0 4.4 22 150-171 36-57 (247)
412 1sgw_A Putative ABC transporte 93.0 0.063 2.2E-06 50.2 3.8 22 150-171 36-57 (214)
413 2v3c_C SRP54, signal recogniti 93.0 0.079 2.7E-06 55.3 4.9 23 149-171 99-121 (432)
414 1g6h_A High-affinity branched- 93.0 0.075 2.6E-06 51.3 4.4 22 150-171 34-55 (257)
415 2r9v_A ATP synthase subunit al 93.0 0.18 6E-06 53.0 7.4 88 150-241 176-278 (515)
416 1q57_A DNA primase/helicase; d 93.0 0.23 7.8E-06 53.0 8.7 53 149-203 242-295 (503)
417 4g1u_C Hemin import ATP-bindin 92.9 0.065 2.2E-06 52.1 3.9 22 150-171 38-59 (266)
418 1vpl_A ABC transporter, ATP-bi 92.9 0.076 2.6E-06 51.2 4.4 22 150-171 42-63 (256)
419 2q6t_A DNAB replication FORK h 92.9 0.41 1.4E-05 50.1 10.3 71 130-203 182-253 (444)
420 2ixe_A Antigen peptide transpo 92.8 0.079 2.7E-06 51.6 4.4 22 150-171 46-67 (271)
421 3d3q_A TRNA delta(2)-isopenten 92.8 0.054 1.8E-06 54.3 3.3 22 150-171 8-29 (340)
422 2ck3_A ATP synthase subunit al 92.8 0.12 4E-06 54.4 5.9 101 138-241 152-273 (510)
423 3r20_A Cytidylate kinase; stru 92.8 0.055 1.9E-06 51.3 3.1 23 149-171 9-31 (233)
424 1np6_A Molybdopterin-guanine d 92.8 0.058 2E-06 48.7 3.1 23 149-171 6-28 (174)
425 3b9q_A Chloroplast SRP recepto 92.8 0.057 2E-06 53.5 3.3 23 149-171 100-122 (302)
426 2ghi_A Transport protein; mult 92.7 0.088 3E-06 50.9 4.5 22 150-171 47-68 (260)
427 1a7j_A Phosphoribulokinase; tr 92.7 0.039 1.3E-06 54.4 2.1 23 149-171 5-27 (290)
428 2yz2_A Putative ABC transporte 92.7 0.086 2.9E-06 51.2 4.4 22 150-171 34-55 (266)
429 2xb4_A Adenylate kinase; ATP-b 92.5 0.061 2.1E-06 50.7 3.1 21 151-171 2-22 (223)
430 1e4v_A Adenylate kinase; trans 92.5 0.06 2E-06 50.3 3.0 21 151-171 2-22 (214)
431 3be4_A Adenylate kinase; malar 92.5 0.06 2E-06 50.4 3.0 22 150-171 6-27 (217)
432 3cf2_A TER ATPase, transitiona 92.5 0.12 4.1E-06 58.0 5.8 94 125-240 476-580 (806)
433 2eyu_A Twitching motility prot 92.4 0.069 2.3E-06 51.7 3.3 108 149-267 25-132 (261)
434 2ihy_A ABC transporter, ATP-bi 92.4 0.097 3.3E-06 51.2 4.4 22 150-171 48-69 (279)
435 3a8t_A Adenylate isopentenyltr 92.4 0.081 2.8E-06 52.9 3.8 23 149-171 40-62 (339)
436 2d2e_A SUFC protein; ABC-ATPas 92.4 0.068 2.3E-06 51.4 3.2 22 150-171 30-51 (250)
437 1ak2_A Adenylate kinase isoenz 92.4 0.075 2.6E-06 50.4 3.5 23 149-171 16-38 (233)
438 1mv5_A LMRA, multidrug resista 92.4 0.069 2.4E-06 51.1 3.2 23 149-171 28-50 (243)
439 2yhs_A FTSY, cell division pro 92.3 0.12 4.1E-06 54.4 5.2 24 148-171 292-315 (503)
440 2wji_A Ferrous iron transport 92.3 0.092 3.2E-06 46.5 3.8 23 150-172 4-26 (165)
441 1fx0_A ATP synthase alpha chai 92.3 0.19 6.5E-06 52.8 6.7 87 150-242 164-267 (507)
442 1svm_A Large T antigen; AAA+ f 92.3 0.11 3.8E-06 53.1 4.8 35 137-171 157-191 (377)
443 2zu0_C Probable ATP-dependent 92.2 0.071 2.4E-06 51.8 3.2 22 150-171 47-68 (267)
444 3crm_A TRNA delta(2)-isopenten 92.2 0.077 2.6E-06 52.8 3.4 22 150-171 6-27 (323)
445 3mfy_A V-type ATP synthase alp 92.2 0.16 5.4E-06 53.9 5.8 57 137-198 216-275 (588)
446 1yrb_A ATP(GTP)binding protein 92.1 0.084 2.9E-06 50.8 3.6 24 148-171 13-36 (262)
447 1ltq_A Polynucleotide kinase; 92.1 0.073 2.5E-06 52.6 3.2 22 150-171 3-24 (301)
448 2qe7_A ATP synthase subunit al 92.1 0.26 8.9E-06 51.7 7.4 86 150-241 163-265 (502)
449 1q3t_A Cytidylate kinase; nucl 91.9 0.089 3E-06 50.0 3.4 24 148-171 15-38 (236)
450 2vp4_A Deoxynucleoside kinase; 91.9 0.069 2.4E-06 50.6 2.6 24 148-171 19-42 (230)
451 1oix_A RAS-related protein RAB 91.9 0.08 2.7E-06 48.3 3.0 24 149-172 29-52 (191)
452 2nq2_C Hypothetical ABC transp 91.9 0.08 2.8E-06 51.0 3.1 22 150-171 32-53 (253)
453 2og2_A Putative signal recogni 91.9 0.093 3.2E-06 53.2 3.6 23 149-171 157-179 (359)
454 3llm_A ATP-dependent RNA helic 91.8 1.6 5.4E-05 41.0 12.1 103 134-241 65-187 (235)
455 3nh6_A ATP-binding cassette SU 91.8 0.095 3.3E-06 51.9 3.5 23 149-171 80-102 (306)
456 2bbs_A Cystic fibrosis transme 91.7 0.12 4.1E-06 50.8 4.2 22 150-171 65-86 (290)
457 3end_A Light-independent proto 91.7 0.099 3.4E-06 51.8 3.6 24 148-171 40-63 (307)
458 3vr4_A V-type sodium ATPase ca 91.7 0.15 5E-06 54.3 4.9 57 137-198 221-280 (600)
459 2pjz_A Hypothetical protein ST 91.7 0.14 4.7E-06 49.6 4.4 22 150-171 31-52 (263)
460 2dyk_A GTP-binding protein; GT 91.7 0.1 3.5E-06 45.6 3.3 23 150-172 2-24 (161)
461 1tf7_A KAIC; homohexamer, hexa 91.6 0.3 1E-05 52.4 7.6 114 149-267 281-416 (525)
462 1tq4_A IIGP1, interferon-induc 91.6 0.088 3E-06 54.5 3.2 36 136-171 56-91 (413)
463 3cmu_A Protein RECA, recombina 91.6 0.19 6.5E-06 61.6 6.5 99 137-240 1414-1515(2050)
464 2zej_A Dardarin, leucine-rich 91.6 0.089 3.1E-06 47.6 2.9 22 151-172 4-25 (184)
465 3sr0_A Adenylate kinase; phosp 91.5 0.096 3.3E-06 48.7 3.1 87 151-251 2-96 (206)
466 2v9p_A Replication protein E1; 91.5 0.094 3.2E-06 51.9 3.1 23 149-171 126-148 (305)
467 3exa_A TRNA delta(2)-isopenten 91.4 0.1 3.5E-06 51.5 3.2 23 149-171 3-25 (322)
468 2f9l_A RAB11B, member RAS onco 91.4 0.1 3.5E-06 47.9 3.1 24 149-172 5-28 (199)
469 3fvq_A Fe(3+) IONS import ATP- 91.2 0.16 5.4E-06 51.4 4.4 22 150-171 31-52 (359)
470 2afh_E Nitrogenase iron protei 91.2 0.12 4E-06 50.7 3.5 23 149-171 2-24 (289)
471 3sop_A Neuronal-specific septi 91.1 0.1 3.5E-06 50.7 3.0 21 151-171 4-24 (270)
472 1cp2_A CP2, nitrogenase iron p 91.1 0.12 3.9E-06 50.1 3.3 22 150-171 2-23 (269)
473 2p67_A LAO/AO transport system 91.1 0.19 6.4E-06 50.7 5.0 34 138-171 45-78 (341)
474 4eaq_A DTMP kinase, thymidylat 91.1 0.12 4E-06 49.0 3.2 23 149-171 26-48 (229)
475 1fzq_A ADP-ribosylation factor 91.1 0.15 5.3E-06 45.9 3.9 25 148-172 15-39 (181)
476 3tui_C Methionine import ATP-b 91.0 0.17 5.9E-06 51.2 4.5 22 150-171 55-76 (366)
477 2ocp_A DGK, deoxyguanosine kin 91.0 0.13 4.3E-06 49.1 3.4 23 149-171 2-24 (241)
478 2qm8_A GTPase/ATPase; G protei 90.9 0.21 7.2E-06 50.2 5.1 34 138-171 44-77 (337)
479 2wjg_A FEOB, ferrous iron tran 90.8 0.14 4.7E-06 46.2 3.4 24 149-172 7-30 (188)
480 3thx_A DNA mismatch repair pro 90.8 0.038 1.3E-06 63.2 -0.5 21 149-169 662-682 (934)
481 3hjn_A DTMP kinase, thymidylat 90.8 0.33 1.1E-05 44.7 5.9 26 151-178 2-27 (197)
482 2ce2_X GTPase HRAS; signaling 90.8 0.12 4E-06 45.3 2.7 22 151-172 5-26 (166)
483 1g8f_A Sulfate adenylyltransfe 90.7 0.15 5.2E-06 54.1 4.0 45 127-171 373-417 (511)
484 3foz_A TRNA delta(2)-isopenten 90.7 0.13 4.5E-06 50.6 3.2 24 148-171 9-32 (316)
485 1nij_A Hypothetical protein YJ 90.6 0.13 4.3E-06 51.5 3.1 24 148-171 3-26 (318)
486 4hlc_A DTMP kinase, thymidylat 90.6 0.31 1.1E-05 45.1 5.6 29 150-180 3-31 (205)
487 2lkc_A Translation initiation 90.6 0.17 5.8E-06 45.0 3.8 25 148-172 7-31 (178)
488 2zts_A Putative uncharacterize 90.6 0.21 7E-06 47.5 4.5 49 149-198 30-78 (251)
489 3kta_A Chromosome segregation 90.6 0.14 4.6E-06 46.3 3.1 22 150-171 27-48 (182)
490 1z2a_A RAS-related protein RAB 90.5 0.13 4.4E-06 45.2 2.8 24 149-172 5-28 (168)
491 3con_A GTPase NRAS; structural 90.5 0.13 4.4E-06 46.6 2.8 23 150-172 22-44 (190)
492 1z47_A CYSA, putative ABC-tran 90.5 0.21 7.1E-06 50.5 4.5 22 150-171 42-63 (355)
493 2qmh_A HPR kinase/phosphorylas 90.4 0.16 5.3E-06 46.7 3.2 22 150-171 35-56 (205)
494 3e1s_A Exodeoxyribonuclease V, 90.4 0.23 7.9E-06 53.8 5.2 22 150-171 205-226 (574)
495 3d31_A Sulfate/molybdate ABC t 90.3 0.18 6E-06 50.9 3.9 22 150-171 27-48 (348)
496 2r8r_A Sensor protein; KDPD, P 90.3 0.14 4.8E-06 48.0 2.9 21 151-171 8-28 (228)
497 2nzj_A GTP-binding protein REM 90.3 0.15 5E-06 45.3 3.0 24 149-172 4-27 (175)
498 2yyz_A Sugar ABC transporter, 90.3 0.22 7.5E-06 50.5 4.5 22 150-171 30-51 (359)
499 3rlf_A Maltose/maltodextrin im 90.3 0.22 7.4E-06 50.8 4.5 22 150-171 30-51 (381)
500 3fdi_A Uncharacterized protein 90.2 0.15 5.2E-06 47.1 3.1 25 150-176 7-31 (201)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.7e-41 Score=371.43 Aligned_cols=273 Identities=17% Similarity=0.202 Sum_probs=215.5
Q ss_pred eechhhHHHHHHHHhcC-CCCceEEEEEcCCCcchHHHHHHHhc--CccccceeeeeeeEecccc----hHHHHHHHHHH
Q 039772 129 VGLDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFATEAYN--SSYVKHYFDCHAWIPDISY----ADQILDIVIKF 201 (608)
Q Consensus 129 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~----~~~l~~~il~~ 201 (608)
|||+.++++|.++|..+ +..+++|+|+||||+||||||+++|+ |.+++.+|++++||++++. +..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999765 44689999999999999999999998 6799999999999999984 78999999999
Q ss_pred hCCCCC---cccccccCHHHHHHHHHHHhCCC-cEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccCchhhhcc---
Q 039772 202 LMPSSR---LSEIMDKNYEMKKIILHEYLMTK-RYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQIEMVTSF--- 274 (608)
Q Consensus 202 l~~~~~---~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~v~~~--- 274 (608)
++.... .+.....+.+.+...+++.|+++ |+||||||||+.+++ .+.. .+||+||||||+ +.++..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~-~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRD-VEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESB-GGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCC-HHHHHHcCC
Confidence 987521 11123445677889999999996 999999999998765 2221 169999999999 888753
Q ss_pred -------c------------------c--ccccchh-----------hHHhhhcCcCCCChhhHhhHHHHhhcccccccC
Q 039772 275 -------K------------------L--EDGENIG-----------LDLVLTGGPLRATYNGWTFLILYHGNISLEENI 316 (608)
Q Consensus 275 -------e------------------~--~~l~~i~-----------Lal~~~g~~L~~~~~~w~~~~~~l~~~~~~~~~ 316 (608)
+ + +++++++ ||++++|+.|+.. .|... ..+....+..
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~--~w~~~-~~l~~~l~~~-- 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK--TFEKM-AQLNNKLESR-- 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS--SHHHH-HHHHHHHHHH--
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc--hHHHH-HHhHHHhhcc--
Confidence 0 1 3333333 9999999999444 24431 1343332221
Q ss_pred CCCCCHHHHHhhcccCCCCcchHHHHh-----------HhhhccCCceechhhHHHHHHHc--CCCCC-----CHHHHHH
Q 039772 317 GKAVGIPLVLRHFKYCSLPFCLKLCFL-----------YLSVFAAHLEISTRQLYQLWIAE--GFIPN-----NSEATAE 378 (608)
Q Consensus 317 ~~~~~i~~~l~~~Sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~li~~w~a~--g~~~~-----~~~~~~~ 378 (608)
...++..++ .+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.. +.++.++
T Consensus 359 -~~~~i~~~l-~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 359 -GLVGVECIT-PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp -CSSTTCCCS-SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred -cHHHHHHHH-hcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 235788899 9999999999999999 999999999999 8999999 89865 4677777
Q ss_pred HHHHHHHHcCCccccccCCCCceeEEEcChhHHHHHHHhhcccCe
Q 039772 379 SYLEQLIKEGFVEAKKRKAGGTINTCSIPGHWRPVLLTVHYMVEF 423 (608)
Q Consensus 379 ~~l~~L~~~sll~~~~~~~~g~~~~~~mHdlv~~~a~~~~~~e~~ 423 (608)
+|++|+++||++....+ ....|+|||++|+||++++.++++
T Consensus 433 -~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred -HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999999987643 346799999999999999887654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-34 Score=350.25 Aligned_cols=282 Identities=19% Similarity=0.202 Sum_probs=221.3
Q ss_pred CCCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccc-ccee-eeeeeEecccc----hHHH
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYV-KHYF-DCHAWIPDISY----ADQI 194 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~----~~~l 194 (608)
.+..+..||||++++++|.++|...+..+++|+|+||||+||||||+++|++.+. ..+| +.++|+++++. ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 3445678999999999999999877667899999999999999999999996433 5556 55779999885 5666
Q ss_pred HHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCC--cEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccCchhhh
Q 039772 195 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTK--RYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQIEMVT 272 (608)
Q Consensus 195 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~v~ 272 (608)
++.++..+............+.+.+...++..+.++ |+||||||||+.++|+.+ ++||+||||||+ +.++
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~-~~~~ 270 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRD-KSVT 270 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESS-TTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCC-HHHH
Confidence 777888887644322234567888999999999887 999999999998876653 579999999999 9887
Q ss_pred cc----------c-------------------cccccc----hh-------hHHhhhcCcCCCChhhHhhHHHHhhcccc
Q 039772 273 SF----------K-------------------LEDGEN----IG-------LDLVLTGGPLRATYNGWTFLILYHGNISL 312 (608)
Q Consensus 273 ~~----------e-------------------~~~l~~----i~-------Lal~~~g~~L~~~~~~w~~~~~~l~~~~~ 312 (608)
.. + ++++.+ |+ |||+++|+.|+.....|...+..+....+
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQF 350 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCC
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhh
Confidence 32 0 122222 22 99999999994333578883334433222
Q ss_pred c-ccC---CCCCCHHHHHhhcccCCCCcchHHHHhHhhhccCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHcC
Q 039772 313 E-ENI---GKAVGIPLVLRHFKYCSLPFCLKLCFLYLSVFAAHLEISTRQLYQLWIAEGFIPNNSEATAESYLEQLIKEG 388 (608)
Q Consensus 313 ~-~~~---~~~~~i~~~l~~~Sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~l~~L~~~s 388 (608)
. +.. .....+..+| .+||+.||+++|.||+|||+||+++.|+.+.++.+|.++ ++.++.++++|+++|
T Consensus 351 ~~~~~~~~~~~~~~~~~l-~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAM-SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKS 422 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHH-HHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTT
T ss_pred hhcccccccchHHHHHHH-HHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhcc
Confidence 2 111 2224689999 999999999999999999999999999999999999765 456899999999999
Q ss_pred CccccccCCCCceeEEEcChhHHHHHHHhhccc
Q 039772 389 FVEAKKRKAGGTINTCSIPGHWRPVLLTVHYMV 421 (608)
Q Consensus 389 ll~~~~~~~~g~~~~~~mHdlv~~~a~~~~~~e 421 (608)
|++... +|+...|+|||++|+|++.++.++
T Consensus 423 l~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 423 LLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 999765 344567999999999999987765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.9e-34 Score=316.73 Aligned_cols=253 Identities=19% Similarity=0.217 Sum_probs=199.2
Q ss_pred CceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeee-eeeEecccc--hHHHHHHHHHHhC
Q 039772 127 DTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC-HAWIPDISY--ADQILDIVIKFLM 203 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~--~~~l~~~il~~l~ 203 (608)
..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++. ...++..|+..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 34999999999999998643 3799999999999999999999998789999987 999999887 6666666666432
Q ss_pred C---CCCcc----cccccCHHHHHHHHHHHh---CCCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccCchhhhc
Q 039772 204 P---SSRLS----EIMDKNYEMKKIILHEYL---MTKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQIEMVTS 273 (608)
Q Consensus 204 ~---~~~~~----~~~~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~v~~ 273 (608)
. ..... .....+.+.....+++.| .+||+||||||||+.++|+.+. +||+||||||+ +.++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd-~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRF-KQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSC-SHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccC-hHHHH
Confidence 1 10000 001224456677788766 7899999999999999998762 59999999999 88763
Q ss_pred c---------c---------------------c----ccccchh----hHHhhhcCcC--CC-ChhhHhhHHHHhhcccc
Q 039772 274 F---------K---------------------L----EDGENIG----LDLVLTGGPL--RA-TYNGWTFLILYHGNISL 312 (608)
Q Consensus 274 ~---------e---------------------~----~~l~~i~----Lal~~~g~~L--~~-~~~~w~~~~~~l~~~~~ 312 (608)
. + . ....+++ |||+++|+.| +. ...+|.. .
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~---~------ 350 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH---V------ 350 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHH---C------
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhc---C------
Confidence 1 1 0 0011222 9999999999 32 4788877 3
Q ss_pred cccCCCCCCHHHHHhhcccCCCCcch-HHHHhHhhhccCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCcc
Q 039772 313 EENIGKAVGIPLVLRHFKYCSLPFCL-KLCFLYLSVFAAHLEISTRQLYQLWIAEGFIPNNSEATAESYLEQLIKEGFVE 391 (608)
Q Consensus 313 ~~~~~~~~~i~~~l~~~Sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~l~~L~~~sll~ 391 (608)
....+..+| ++||+.||++. |.||+|||+||+++.|+.+.++.+|+++| ++.++.++++|+++||++
T Consensus 351 -----~~~~I~aaL-elSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 351 -----NCDKLTTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp -----SCHHHHHHH-HHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSS
T ss_pred -----ChhHHHHHH-HHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEE
Confidence 224799999 99999999999 99999999999999999999999999876 234889999999999999
Q ss_pred ccccCCCCceeEEEcChhHHHHH
Q 039772 392 AKKRKAGGTINTCSIPGHWRPVL 414 (608)
Q Consensus 392 ~~~~~~~g~~~~~~mHdlv~~~a 414 (608)
... ....|+|||++++++
T Consensus 419 ~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 419 KQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp BCS-----SSSEEBCCCHHHHHH
T ss_pred EeC-----CCCEEEehHHHHHHh
Confidence 842 125699999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=1.4e-31 Score=297.93 Aligned_cols=276 Identities=18% Similarity=0.215 Sum_probs=208.9
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccc-cceee-eeeeEecccc-h---HHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYV-KHYFD-CHAWIPDISY-A---DQIL 195 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~vs~~-~---~~l~ 195 (608)
+..+..||||+.++++|.++|.......++|+|+||||+||||||+++|++.++ ..+|+ +++|++++.. . ..-+
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHH
Confidence 345678999999999999999865556899999999999999999999997555 78895 7999998776 3 3333
Q ss_pred HHHHHHhCCCCCcccccccCHHHHHHHHHHHhCC--CcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccCchhhhc
Q 039772 196 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT--KRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQIEMVTS 273 (608)
Q Consensus 196 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~v~~ 273 (608)
..++..++.....+.....+.+.....++..+.+ +++||||||||+.+.++. .++||+||||||+ ..++.
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~-~~~~~ 271 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRD-KSVTD 271 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESC-GGGGT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCC-cHHHH
Confidence 3445555532111112445677888888888876 799999999999776543 2568999999999 77653
Q ss_pred c------c-----------------------ccc----ccchh-------hHHhhhcCcCCCChhhHhhHHHHhhccccc
Q 039772 274 F------K-----------------------LED----GENIG-------LDLVLTGGPLRATYNGWTFLILYHGNISLE 313 (608)
Q Consensus 274 ~------e-----------------------~~~----l~~i~-------Lal~~~g~~L~~~~~~w~~~~~~l~~~~~~ 313 (608)
. + ... ..+|+ ||++.+|+.++.....|.. .++.+...
T Consensus 272 ~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~---~l~~l~~~ 348 (591)
T 1z6t_A 272 SVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEY---YLKQLQNK 348 (591)
T ss_dssp TCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHH---HHHHHHSC
T ss_pred hcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHH---HHHHHHHh
Confidence 2 0 111 11222 9999999999444457888 44443322
Q ss_pred c----cC---CCCCCHHHHHhhcccCCCCcchHHHHhHhhhccCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 039772 314 E----NI---GKAVGIPLVLRHFKYCSLPFCLKLCFLYLSVFAAHLEISTRQLYQLWIAEGFIPNNSEATAESYLEQLIK 386 (608)
Q Consensus 314 ~----~~---~~~~~i~~~l~~~Sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~l~~L~~ 386 (608)
. .. ....++..++ ..||+.||++.|.||++||+||+++.|+.+.+..+|.+. ...+..++.+|++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l-~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~ 420 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAM-SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVN 420 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHH-HHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHH-HHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHh
Confidence 1 10 2334789999 999999999999999999999999999999999999653 3457889999999
Q ss_pred cCCccccccCCCCceeEEEcChhHHHHHHHhhc
Q 039772 387 EGFVEAKKRKAGGTINTCSIPGHWRPVLLTVHY 419 (608)
Q Consensus 387 ~sll~~~~~~~~g~~~~~~mHdlv~~~a~~~~~ 419 (608)
+||++... +|....|+||+++|++++....
T Consensus 421 ~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 421 KSLLFCDR---NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp TTSSEEEE---ETTEEEEECCHHHHHHHHHHTG
T ss_pred CcCeEEec---CCCccEEEEcHHHHHHHHhhhh
Confidence 99998654 2344679999999999998843
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.54 E-value=1.4e-14 Score=148.31 Aligned_cols=163 Identities=17% Similarity=0.076 Sum_probs=109.3
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHh---------hccccceeEeecCCCcCccCCcc
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKI---------CGMFKLLRVLDLGSLVLIQYPSG 505 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~---------~~~~~~Lr~L~L~~~~l~~lp~~ 505 (608)
..++.|.+..+... ..+..+ +++|+.|.+.+|... ...+.. +..+++|++|++++|.+..+|..
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~----~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~ 201 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL----TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC----CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc----cccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh
Confidence 45666666666555 233333 667777777665443 122222 23477777777777777777777
Q ss_pred cCCCCCccEEEecCCCCCcCChHHHhcCccCcEEecccc-ccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCccc
Q 039772 506 IENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFS-YIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENL 583 (608)
Q Consensus 506 i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~-~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L 583 (608)
++.+++|++|++++|.+..+|+.+ +++++|++|++++| ....+|..++++++|++|++++| .....+| .+++|..|
T Consensus 202 l~~l~~L~~L~L~~N~l~~l~~~l-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDIHRLTQL 279 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCCCGGG-GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC-TTCCBCCTTGGGCTTC
T ss_pred hcCCCCCCEEEccCCCCCcCchhh-ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC-CchhhcchhhhcCCCC
Confidence 777788888888888777777777 77888888888877 55677777778888888888773 3355577 77778888
Q ss_pred ceeeccC---CCcccchhcCCCCCCCC
Q 039772 584 NFISALH---PCCCTEDLLGRLPNLQN 607 (608)
Q Consensus 584 ~~l~~~~---~~~~~~~~l~~L~~L~~ 607 (608)
+.++++. .+..+.. +++|++|+.
T Consensus 280 ~~L~L~~n~~~~~iP~~-l~~L~~L~~ 305 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSL-IAQLPANCI 305 (328)
T ss_dssp CEEECTTCTTCCCCCGG-GGGSCTTCE
T ss_pred CEEeCCCCCchhhccHH-HhhccCceE
Confidence 8888772 2333444 777777664
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=2.8e-14 Score=146.08 Aligned_cols=165 Identities=20% Similarity=0.201 Sum_probs=136.9
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCc-CccCCcccCC----
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLV-LIQYPSGIEN---- 508 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~lp~~i~~---- 508 (608)
...+++|.+..+... ..+..+ +++|++|.+.++... .++..+..+++|+.|++++|. +..+|..++.
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-----ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-----CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-----cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 457899999988877 445444 899999999998775 345678999999999999976 5578877765
Q ss_pred -----CCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcc
Q 039772 509 -----LFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLEN 582 (608)
Q Consensus 509 -----L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~ 582 (608)
+++|++|++++|.+..+|.++ +++++|++|+|++|.+..+|..++++++|++|++++|.. ...+| .++.+..
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~-~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIRSLPASI-ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA-LRNYPPIFGGRAP 254 (328)
T ss_dssp CCEEESTTCCEEEEEEECCCCCCGGG-GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTT-CCBCCCCTTCCCC
T ss_pred hhhccCCCCCEEECcCCCcCcchHhh-cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcc-hhhhHHHhcCCCC
Confidence 999999999999999999999 999999999999999999999999999999999999543 45588 8999999
Q ss_pred cceeeccC--CCcccchhcCCCCCCCCC
Q 039772 583 LNFISALH--PCCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 583 L~~l~~~~--~~~~~~~~l~~L~~L~~L 608 (608)
|+.+++++ ....++..++.+++|+.|
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 99999983 222333327888888754
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=2.1e-13 Score=135.54 Aligned_cols=166 Identities=19% Similarity=0.177 Sum_probs=112.1
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFLL 512 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~L 512 (608)
+..+++|.+..+......+..+ +++|++|.+.++... ..++..|..+++|+.|++++|.+..+|. .+..+.+|
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 111 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ----TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS----CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC----eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence 4567788887776653333333 778888888777665 3455566778888888888888776664 44677788
Q ss_pred cEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhH-hcccccCcEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 513 RYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADE-FWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 513 r~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
++|++++|.+..+|+..|+.+++|++|+|++|.+..+|.. ++.+++|++|++++|. +..+| .+.++.+|+.++++
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ--LKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc--CcEeChhHhccCCCcCEEECC
Confidence 8888888877777665447788888888888877777764 6778888888887765 45555 46667777777777
Q ss_pred CC--CcccchhcCCCCCCCC
Q 039772 590 HP--CCCTEDLLGRLPNLQN 607 (608)
Q Consensus 590 ~~--~~~~~~~l~~L~~L~~ 607 (608)
++ ...++..++.+++|+.
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCE
T ss_pred CCcCCcCCHHHhccccCCCE
Confidence 21 1222222455555553
No 8
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.45 E-value=4.3e-13 Score=134.75 Aligned_cols=164 Identities=20% Similarity=0.078 Sum_probs=115.9
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCcc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLR 513 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr 513 (608)
+..++.|.+..+......+..+ +++|+.|.+.++... ... . ...+++|+.|++++|.+..+|..+..+++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~-~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 103 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT----KLQ-V-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALT 103 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC----EEE-C-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCC
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC----ccc-C-CCCCCcCCEEECCCCcCCcCchhhccCCCCC
Confidence 4577888888877764444444 788888888887764 222 2 2677888888888888888888888888888
Q ss_pred EEEecCCCCCcCChHHHhcCccCcEEeccccccccchhH-hcccccCcEEEecCCCCCCcCCC-C-CCCCcccceeecc-
Q 039772 514 YLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADE-FWKMNKLRHLNFGSITLPAHPGK-Y-CGSLENLNFISAL- 589 (608)
Q Consensus 514 ~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP-~-i~~L~~L~~l~~~- 589 (608)
+|++++|.+..+|+..|+++.+|++|+|++|.+..+|.. +..+++|++|++++|. +..+| + +.+|..|+.++++
T Consensus 104 ~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN--LTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc--CCccCHHHhcCcCCCCEEECCC
Confidence 888888888887754338888888888888888777764 5678888888888866 55677 4 4668888888887
Q ss_pred CCCcccchhcCCCCCCCC
Q 039772 590 HPCCCTEDLLGRLPNLQN 607 (608)
Q Consensus 590 ~~~~~~~~~l~~L~~L~~ 607 (608)
+.-..++.++..+.+|+.
T Consensus 182 N~l~~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 182 NSLYTIPKGFFGSHLLPF 199 (290)
T ss_dssp SCCCCCCTTTTTTCCCSE
T ss_pred CcCCccChhhcccccCCe
Confidence 222233333555555543
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=4.9e-13 Score=131.30 Aligned_cols=149 Identities=19% Similarity=0.168 Sum_probs=118.9
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~ 511 (608)
.+..++.|.+..+......+..+ +++|+.|.+.++... ...+..|..+++|+.|++++|.+..+|. .+..+.+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 108 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ----TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC----ccCHhHhccCCcCCEEECCCCcccccChhHhcccCC
Confidence 34678888888887764444444 788999999888775 4556678888899999999998887764 5678889
Q ss_pred ccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeec
Q 039772 512 LRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISA 588 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~ 588 (608)
|++|++++|.+..+|+.+|+++.+|++|+|++|.+..+|. .++++++|++|++++|. +..+| .+..+..|+.+++
T Consensus 109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ--LQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc--CCccCHHHHhCCCCCCEEEe
Confidence 9999999998988888755888999999999998888887 68889999999999876 45565 6777888888888
Q ss_pred c
Q 039772 589 L 589 (608)
Q Consensus 589 ~ 589 (608)
+
T Consensus 187 ~ 187 (251)
T 3m19_A 187 F 187 (251)
T ss_dssp C
T ss_pred e
Confidence 7
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=4.2e-13 Score=134.41 Aligned_cols=165 Identities=19% Similarity=0.112 Sum_probs=98.2
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCC-CCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCCc
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPE-SRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFLL 512 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~-~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L 512 (608)
..++.|.+..+......+..+ +++|++|.+.++. .. ...+..+..+++|+.|++++|.+..+ |..+..+++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR----SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc----ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 455666665554443223333 5666666666664 32 23345566667777777777766654 4556667777
Q ss_pred cEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCC-C-CCCCCcccceeecc
Q 039772 513 RYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPG-K-YCGSLENLNFISAL 589 (608)
Q Consensus 513 r~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~l-P-~i~~L~~L~~l~~~ 589 (608)
++|++++|.+..+|...|+++++|++|++++|.+..+|. .+.++++|++|++++|. +..+ | .++++..|+.++++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR--VAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc--ccccCHhHccCcccccEeeCC
Confidence 777777777776665422667777777777776666665 36677777777777754 3333 5 66667777777776
Q ss_pred CC--CcccchhcCCCCCCCC
Q 039772 590 HP--CCCTEDLLGRLPNLQN 607 (608)
Q Consensus 590 ~~--~~~~~~~l~~L~~L~~ 607 (608)
++ ...+++.+..+++|+.
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCE
T ss_pred CCcCCcCCHHHcccCcccCE
Confidence 21 2222222556666654
No 11
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=8e-13 Score=129.78 Aligned_cols=145 Identities=20% Similarity=0.156 Sum_probs=113.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
.++++.|.+.++... ...+..|..+++|+.|++++|.+..+++ .+..+++|++|++++|.+..+|...|+.+++|
T Consensus 34 ~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 34 PADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp CTTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEEccCCCcC----ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 678899999888876 4556678889999999999999886654 57889999999999999988887655889999
Q ss_pred cEEeccccccccchhH-hcccccCcEEEecCCCCCCcCCC--CCCCCcccceeeccCC--CcccchhcCCCCCCCCC
Q 039772 537 YTLDMPFSYIEHTADE-FWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISALHP--CCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~~~--~~~~~~~l~~L~~L~~L 608 (608)
++|+|++|.+..+|.. ++++++|++|++++|. +..+| .++.+..|+.|+++++ ...++..+..+++|+.|
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCc--CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 9999999988888875 5889999999999876 55666 5788899999998822 22333226667776643
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.42 E-value=7.4e-13 Score=132.59 Aligned_cols=147 Identities=19% Similarity=0.120 Sum_probs=84.7
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCc-CccC-CcccCCCCC
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLV-LIQY-PSGIENLFL 511 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~l-p~~i~~L~~ 511 (608)
+..+++|.+..+......+..+ +++|+.|.+.++... ...+..|..+++|+.|++++|. +..+ |..+..+++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA----RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc----eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 3456666666655543222223 566666666665543 3334555666666666666665 5544 455666666
Q ss_pred ccEEEecCCCCCcCCh-HHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceee
Q 039772 512 LRYLKLNIPSLKSLPS-SLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFIS 587 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP~-si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~ 587 (608)
|++|++++|.+..+|+ .+ +++++|++|++++|.+..+|. .++++++|++|++++|. +..+| .++.+..|+.++
T Consensus 107 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc--ccccCHHHhcCccccCEEE
Confidence 6666666666665533 33 666666666666666665554 35666666666666644 34444 355566666666
Q ss_pred cc
Q 039772 588 AL 589 (608)
Q Consensus 588 ~~ 589 (608)
++
T Consensus 184 l~ 185 (285)
T 1ozn_A 184 LH 185 (285)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=1.1e-12 Score=126.93 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=106.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
.++|+.|.+.++... ...+..|..+++|+.|+|++|.+..+|.. +..+.+|++|+|++|.+..+|..+|+.+.+|
T Consensus 39 ~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 39 PTNAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp CTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 678899999888776 45567788889999999999998888754 5788999999999999998887755889999
Q ss_pred cEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 537 YTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
++|+|++|.+..+|..++++++|++|++++|. +..+| .+..+..|+.++++
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQ--LKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECT
T ss_pred CeEeccCCcccccCcccccCCCCCEEECCCCc--CCccCHHHHhCCCCCCEEEee
Confidence 99999999888999999999999999999876 55666 57778888888887
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.41 E-value=8.6e-13 Score=131.07 Aligned_cols=164 Identities=20% Similarity=0.193 Sum_probs=128.7
Q ss_pred ceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCccc-CCCCCccEEE
Q 039772 438 KVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGI-ENLFLLRYLK 516 (608)
Q Consensus 438 ~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i-~~L~~Lr~L~ 516 (608)
..+.+........ .++....++++.|.+.++... ...+..|..+++|+.|++++|.+..+|..+ ..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIPADTKKLDLQSNKLS----SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCCTTCSEEECCSSCCS----CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCCCCCCCEEECcCCCCC----eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 3445555555444 133333678999999998876 455667899999999999999999888765 7899999999
Q ss_pred ecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeeccCC--
Q 039772 517 LNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISALHP-- 591 (608)
Q Consensus 517 l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~~~-- 591 (608)
+++|.+..+|...|.++++|++|++++|.+..+|. .++++++|++|++++|. +..+| .++.+.+|+.++++++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHccCCcccceeEecCCcC
Confidence 99999999988765899999999999999988876 57999999999999976 66677 4788999999999832
Q ss_pred CcccchhcCCCCCCCCC
Q 039772 592 CCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 592 ~~~~~~~l~~L~~L~~L 608 (608)
....+..+..+++|+.|
T Consensus 170 ~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTL 186 (270)
T ss_dssp SCCCTTTTTTCTTCCEE
T ss_pred cEeChhHhccCCCcCEE
Confidence 22222225667777653
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=2.7e-13 Score=137.81 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=66.4
Q ss_pred cceEEEEEecccccc--cccccc--cccceEEeecC-CCCCCCCCcchHHhhccccceeEeecCCCcCc-cCCcccCCCC
Q 039772 437 KKVKRLNAVKRQEDF--AYLDYY--DSQLHSLLCCS-PESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-QYPSGIENLF 510 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~--~~~~~~--~~~LrsL~l~~-~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~ 510 (608)
.+++++.+..+.... ..+..+ +++|++|.+.+ +... ...+..|..+++|++|++++|.+. .+|..++.++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 455666665555443 233333 55666666653 3332 233344555555555555555554 4555555555
Q ss_pred CccEEEecCCCCC-cCChHHHhcCccCcEEeccccccc-cchhHhcccc-cCcEEEecCC
Q 039772 511 LLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYIE-HTADEFWKMN-KLRHLNFGSI 567 (608)
Q Consensus 511 ~Lr~L~l~~~~i~-~LP~si~~~L~~L~~L~L~~~~l~-~lP~~i~~L~-~L~~L~l~~~ 567 (608)
+|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..++++. +|++|++++|
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp TCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred CCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 5555555555554 455555 55555555555555444 5555555555 5555555553
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=1.4e-12 Score=129.70 Aligned_cols=145 Identities=21% Similarity=0.256 Sum_probs=91.4
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCCcc
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFLLR 513 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~Lr 513 (608)
..++.|.+..+.... .+.. +++|++|.+.++... ...+..|..+++|+.|++++|.+..+|+. ++.+++|+
T Consensus 63 ~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ----SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp TTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccC----ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 456666666665542 2223 666777777666554 34445566677777777777776655543 56677777
Q ss_pred EEEecCCCCCcCChHHHhcCccCcEEeccccccccchhH-hcccccCcEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 514 YLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADE-FWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 514 ~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
+|++++|.+..+|+..|+++++|++|++++|.+..+|.. ++++++|++|++++|. +..+| .++.+..|+.++++
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc--CCccCHHHHhCCcCCCEEEcc
Confidence 777777777766655436677777777777766666553 4667777777777654 34444 35667777777766
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.41 E-value=8.4e-13 Score=141.37 Aligned_cols=149 Identities=23% Similarity=0.195 Sum_probs=107.6
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~ 511 (608)
.+..++.|.+..+......+..+ +++|+.|.+.++... ...+..|..+++|+.|+|++|.+..+|.. +..+++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR----QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC----CcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 44678888888887764444444 788888888888765 45567788888888888888888877754 777888
Q ss_pred ccEEEecCCCCCcCChHHHhcCccCcEEecccc-ccccchh-HhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 512 LRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFS-YIEHTAD-EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~-~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
|++|++++|.+..+|...|.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|.+..+..|+.|+++
T Consensus 149 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--IKDMPNLTPLVGLEELEMS 226 (452)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--CSSCCCCTTCTTCCEEECT
T ss_pred CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc--ccccccccccccccEEECc
Confidence 888888888888877744477777777777775 6666665 46677777777777754 4445555556666666665
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=139.58 Aligned_cols=149 Identities=19% Similarity=0.136 Sum_probs=100.0
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~ 511 (608)
.+..++.|.+..+......+..+ +++|+.|.+.++... ...+..|..+++|+.|+|++|.+..+|. .+..+.+
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR----TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC----EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC----ccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 34567778887777664443444 778888888877665 4555677778888888888888777765 5777788
Q ss_pred ccEEEecCCCCCcCChHHHhcCccCcEEecccc-ccccchh-HhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 512 LRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFS-YIEHTAD-EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~-~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
|++|++++|.+..+|...|.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|.+..+.+|+.|+++
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN--LREIPNLTPLIKLDELDLS 215 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC--CSSCCCCTTCSSCCEEECT
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc--CccccccCCCcccCEEECC
Confidence 888888888777776643366677777777665 5555555 46666666666666644 4445555555555555555
No 19
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=1.8e-12 Score=130.18 Aligned_cols=120 Identities=17% Similarity=0.084 Sum_probs=55.4
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
+++|++|.+.++... ...+ +..+++|+.|++++|.+..+|. ++.+++|++|++++|.+..+| .+ +.+++|+
T Consensus 67 l~~L~~L~L~~n~l~----~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l-~~l~~L~ 137 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLT----DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GL-VHLPQLE 137 (291)
T ss_dssp CTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GG-GGCTTCC
T ss_pred CCCCCEEEccCCccC----CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hh-cCCCCCC
Confidence 445555555544443 1111 4445555555555555444332 444555555555555544443 24 4455555
Q ss_pred EEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 538 TLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 538 ~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
+|++++|.+..++ .++++++|++|++++|. +..+|.++.+..|+.++++
T Consensus 138 ~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~--l~~~~~l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 138 SLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLS 186 (291)
T ss_dssp EEECCSSCCCCCG-GGGGCTTCSEEECCSSC--CCCCGGGTTCTTCCEEECC
T ss_pred EEEccCCcCCcch-hhccCCCCCEEEccCCc--cccchhhcCCCccCEEECC
Confidence 5555555444442 34455555555555433 2223234444444444444
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=1.5e-12 Score=130.76 Aligned_cols=163 Identities=20% Similarity=0.109 Sum_probs=131.3
Q ss_pred cceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLK 516 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~ 516 (608)
.+++.+.+..+... .++....++++.|.+.++... ...+..|..+++|+.|++++|.+..+|.. +.+++|++|+
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~~~l~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLY----TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCCTTCCEEECTTSCCS----EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred CCccEEECCCCCCC-cCCCCCCCCCCEEEcCCCcCC----ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 35666666665544 233333789999999999876 56678899999999999999999988765 8899999999
Q ss_pred ecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeeccC-C-
Q 039772 517 LNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISALH-P- 591 (608)
Q Consensus 517 l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~~-~- 591 (608)
+++|.+..+|..+ +.+++|++|++++|.+..+|. .+.++++|++|++++|. +..+| .+..+..|+.+++++ .
T Consensus 84 Ls~N~l~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 84 LSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp CCSSCCSSCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCcCCcCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC--CCccChhhcccccCCCEEECCCCcC
Confidence 9999999999988 999999999999999999985 79999999999999976 56677 467799999999982 2
Q ss_pred CcccchhcCCCCCCCCC
Q 039772 592 CCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 592 ~~~~~~~l~~L~~L~~L 608 (608)
...++..+..+++|+.|
T Consensus 161 ~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTL 177 (290)
T ss_dssp SCCCTTTTTTCTTCCEE
T ss_pred CccCHHHhcCcCCCCEE
Confidence 22333324567777653
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=2.1e-12 Score=130.93 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=119.5
Q ss_pred CcceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccE
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 514 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~ 514 (608)
...++.|.+..+....... .. +++|+.|.+.++... .. +.+..+++|+.|++++|.+..+|. +..+++|++
T Consensus 62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~----~~--~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK----NV--SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS----CC--GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC----Cc--hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCE
Confidence 4567888887776653222 22 788888888887764 22 357788888888888888887765 788888888
Q ss_pred EEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc-CCCc
Q 039772 515 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL-HPCC 593 (608)
Q Consensus 515 L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~-~~~~ 593 (608)
|++++|.+..+|. + +++++|++|++++|.+..+|. +.++++|++|++++|. +..+|.+..+..|+.++++ +.-.
T Consensus 134 L~l~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 134 LYLDLNQITNISP-L-AGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK--ISDISPLASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp EECCSSCCCCCGG-G-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--CCCCGGGGGCTTCCEEECTTSCCC
T ss_pred EECCCCccCcCcc-c-cCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc--cCcChhhcCCCCCCEEEccCCccC
Confidence 8888888888877 6 888888888888888888887 8888888888888865 5556666778888888888 3333
Q ss_pred ccchhcCCCCCCCCC
Q 039772 594 CTEDLLGRLPNLQNL 608 (608)
Q Consensus 594 ~~~~~l~~L~~L~~L 608 (608)
.++. +..+++|+.|
T Consensus 209 ~~~~-l~~l~~L~~L 222 (308)
T 1h6u_A 209 DVSP-LANTSNLFIV 222 (308)
T ss_dssp BCGG-GTTCTTCCEE
T ss_pred cccc-ccCCCCCCEE
Confidence 4445 7777777653
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=1.6e-12 Score=124.97 Aligned_cols=126 Identities=18% Similarity=0.189 Sum_probs=97.5
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
.++++.|.+.++... ...+..|..+++|+.|+|++|.+..+ |..+..+.+|++|+|++|.+..+|..+|..+++|
T Consensus 31 ~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 31 PETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp CTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 567888888877765 45555778888888888888888755 6778888888888888888888887765778888
Q ss_pred cEEeccccccccc-hhHhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 537 YTLDMPFSYIEHT-ADEFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 537 ~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
++|+|++|.+..+ |..+..+++|++|++++|. +..+| .+..+..|+.++++
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK--LQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc--CCEECHHHHhCCCCCCEEEeC
Confidence 8888888877776 4478888888888888866 55555 47778888888877
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=1.8e-12 Score=128.88 Aligned_cols=162 Identities=19% Similarity=0.196 Sum_probs=127.3
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCCcc
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFLLR 513 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~Lr 513 (608)
..++.+.+..+... ..+.. +++|+.|.+.++... .. +.+..+++|++|++++|.+..+|.. ++.+++|+
T Consensus 41 ~~L~~L~l~~~~i~--~~~~l~~l~~L~~L~l~~n~l~----~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 41 NSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNKLH----DI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp TTCCEEECTTSCCC--CCTTGGGCTTCCEEECTTSCCC----CC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cceeeeeeCCCCcc--cccccccCCCCcEEECCCCCCC----Cc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 56777887777655 33334 899999999998765 22 4678999999999999999877754 68999999
Q ss_pred EEEecCCCCCcCChHHHhcCccCcEEeccccccccchhH-hcccccCcEEEecCCCCCCcCCC--CCCCCcccceeeccC
Q 039772 514 YLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADE-FWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISALH 590 (608)
Q Consensus 514 ~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~~ 590 (608)
+|++++|.+..+|+..|+++++|++|++++|.+..+|.. ++++++|++|++++|. +..+| .++.+..|+.+++++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ--LQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC--cCccCHHHhcCCccCCEEECCC
Confidence 999999999988877448999999999999999888874 6899999999999976 55666 468899999999982
Q ss_pred C--CcccchhcCCCCCCCCC
Q 039772 591 P--CCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 591 ~--~~~~~~~l~~L~~L~~L 608 (608)
+ ...++..++.+++|+.|
T Consensus 191 N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEE
T ss_pred CcCCccCHHHHhCCcCCCEE
Confidence 2 22333325677777653
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.37 E-value=9.6e-13 Score=133.74 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=75.0
Q ss_pred cceEEEEEec-ccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-cCCcccCCCCCc
Q 039772 437 KKVKRLNAVK-RQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-QYPSGIENLFLL 512 (608)
Q Consensus 437 ~~~r~l~~~~-~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~~L 512 (608)
..++.|.+.. +......+..+ +++|++|.+.++... ...+..+..+++|+.|++++|.+. .+|..++.+++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC----CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 4566666663 44443344444 666777776666553 344555666666666666666665 566666666666
Q ss_pred cEEEecCCCCC-cCChHHHhcCc-cCcEEeccccccc-cchhHhcccccCcEEEecCC
Q 039772 513 RYLKLNIPSLK-SLPSSLLSNLL-NLYTLDMPFSYIE-HTADEFWKMNKLRHLNFGSI 567 (608)
Q Consensus 513 r~L~l~~~~i~-~LP~si~~~L~-~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~~ 567 (608)
++|++++|.+. .+|..+ +++. +|++|++++|.+. .+|..++.++ |++|++++|
T Consensus 152 ~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp CEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred CeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 66666666665 666666 6665 6666666666544 4555555554 555555553
No 25
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.36 E-value=6.2e-12 Score=127.43 Aligned_cols=139 Identities=17% Similarity=0.121 Sum_probs=77.5
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 514 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~ 514 (608)
.+++.|.+..+.... .+.. +++|+.|.+.++... .. + .+..+++|+.|++++|.+..+|. ++.+++|++
T Consensus 85 ~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~l~~n~l~----~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 155 (308)
T 1h6u_A 85 TKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQIT----DV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQY 155 (308)
T ss_dssp CSCCEEECCSCCCSC--CGGGTTCTTCCEEECTTSCCC----CC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred CCCCEEEccCCcCCC--chhhcCCCCCCEEECCCCCCC----Cc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccE
Confidence 455566665555442 2222 556666666665543 11 1 25566666666666666655554 556666666
Q ss_pred EEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 515 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 515 L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
|++++|.+..+|. + +++++|+.|++++|.+..+|. +..+++|++|++++|. +..+|.+..+..|+.++++
T Consensus 156 L~l~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~--l~~~~~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 156 LSIGNAQVSDLTP-L-ANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ--ISDVSPLANTSNLFIVTLT 225 (308)
T ss_dssp EECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC--CCBCGGGTTCTTCCEEEEE
T ss_pred EEccCCcCCCChh-h-cCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc--cCccccccCCCCCCEEEcc
Confidence 6666666666555 5 666666666666666665554 5566666666666644 3334444445555555555
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.35 E-value=1.1e-12 Score=146.27 Aligned_cols=128 Identities=20% Similarity=0.126 Sum_probs=94.4
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
.++++.|.+.++... .+++..|..+++|++|+|++|.++.+|+ .+.+|++|++|+|++|.++.+|+..|++|++|
T Consensus 51 p~~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CcCCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 557777777777665 4555677778888888888887777654 56778888888888888887776554778888
Q ss_pred cEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 537 YTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
++|+|++|++..+|. .+++|++|++|++++|......+| .++.|..|+.++++
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 888888887777776 477788888888887665444566 66777777777776
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=3.2e-12 Score=121.57 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=47.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
+++|+.|.+.++... ..++..|..+++|++|++++|.+..+|.. ++.+.+|++|++++|.+..+|+..|+++++|
T Consensus 51 l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQ----SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp CTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCcEEECCCCccC----ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 444444444444333 22233344444444444444444444332 3444444444444444444444322444444
Q ss_pred cEEeccccccccchhH-hcccccCcEEEecC
Q 039772 537 YTLDMPFSYIEHTADE-FWKMNKLRHLNFGS 566 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~ 566 (608)
++|++++|.+..+|.. +.++++|++|++++
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 4444444444444442 34444444444444
No 28
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=1.2e-12 Score=148.09 Aligned_cols=109 Identities=26% Similarity=0.232 Sum_probs=84.1
Q ss_pred chHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccc
Q 039772 478 DWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMN 557 (608)
Q Consensus 478 ~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~ 557 (608)
.++..+..+..|+.|+|++|.+..+|..+..+.+|++|+|++|.|..+|.++ ++|.+|++|+|++|.+..+|.++++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 4556677888888888888888888888888888888888888888888888 888888888888888778888888888
Q ss_pred cCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 558 KLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 558 ~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
+|++|+|++|. +..+| +|++|..|+.|+++
T Consensus 294 ~L~~L~L~~N~--l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 294 QLKYFYFFDNM--VTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp TCSEEECCSSC--CCCCCSSTTSCTTCCCEECT
T ss_pred CCCEEECCCCC--CCccChhhhcCCCccEEeCC
Confidence 88888888865 55778 88888888888887
No 29
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=4.3e-12 Score=140.13 Aligned_cols=140 Identities=19% Similarity=0.125 Sum_probs=82.2
Q ss_pred cceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 515 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L 515 (608)
..++.|.+..+......+ .. +++|+.|.+.++... . + +.+..+++|+.|+|++|.+..+| .+..|++|+.|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~----~-l-~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK----D-L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESL 136 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC----C-C-TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEE
T ss_pred CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC----C-C-hhhccCCCCCEEEecCCCCCCCc-cccCCCccCEE
Confidence 456666666555442221 11 666666666666543 1 1 24556666666666666666543 35666666666
Q ss_pred EecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 516 KLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 516 ~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
+|++|.+..+ +.+ +.+++|+.|+|++|.+..+|. +..|++|++|++++|. +..+|.++.|..|+.|+++
T Consensus 137 ~Ls~N~l~~l-~~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 137 YLGNNKITDI-TVL-SRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH--ISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp ECCSSCCCCC-GGG-GSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--CCBCGGGTTCTTCSEEECC
T ss_pred ECCCCccCCc-hhh-cccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC--CCCChHHccCCCCCEEEcc
Confidence 6666666666 335 666666666666666666655 6666666666666654 3444555556666666665
No 30
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=5e-12 Score=121.51 Aligned_cols=126 Identities=16% Similarity=0.126 Sum_probs=96.7
Q ss_pred cccceEEeecCCCCCCCCCcc-hHHhhccccceeEeecCCCcCccCCc-ccCCCCCccEEEecCCCCCcCChHHHhcCcc
Q 039772 458 DSQLHSLLCCSPESRHFDPMD-WEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~-~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~ 535 (608)
.+.++.|.+.++... .. ....|..+++|+.|+|++|.+..+|+ .+..+.+|++|+|++|.+..+|+..|+.+++
T Consensus 31 ~~~~~~L~L~~N~l~----~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 31 PQYTAELRLNNNEFT----VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp CTTCSEEECCSSCCC----EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCCCEEEcCCCcCC----ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 556778888877764 23 22457788888888888888886664 6888888888888888888887764488888
Q ss_pred CcEEeccccccccc-hhHhcccccCcEEEecCCCCCCcCC-C-CCCCCcccceeecc
Q 039772 536 LYTLDMPFSYIEHT-ADEFWKMNKLRHLNFGSITLPAHPG-K-YCGSLENLNFISAL 589 (608)
Q Consensus 536 L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~l-P-~i~~L~~L~~l~~~ 589 (608)
|++|+|++|.+..+ |..++.+++|++|++++|. +..+ | .++.|..|+.++++
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ--ITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC--CCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCeECHhHcCCCccCCEEECCCCc--CCEECHHHhcCCCCCCEEEec
Confidence 88888888877777 5578888888888888876 4445 5 77778888888887
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.33 E-value=3.3e-12 Score=120.47 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=117.8
Q ss_pred cceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc-CCcccCCCCCccE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ-YPSGIENLFLLRY 514 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~i~~L~~Lr~ 514 (608)
..++.+.+..+.... .+... +++|++|.+.++... .+ +.+..+++|+.|++++|.+.. .|..++.+++|++
T Consensus 44 ~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~n~~~-----~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LTGIEYAHNIKDLTINNIHAT-----NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HTCCEEEEESSCCSC-CTTGGGCTTCSEEEEESCCCS-----CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred CCccEEeccCCCccC-hHHHhcCCCCCEEEccCCCCC-----cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 568889998887762 23222 899999999998543 22 467889999999999999874 7888999999999
Q ss_pred EEecCCCCCc-CChHHHhcCccCcEEeccccc-cccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 515 LKLNIPSLKS-LPSSLLSNLLNLYTLDMPFSY-IEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 515 L~l~~~~i~~-LP~si~~~L~~L~~L~L~~~~-l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
|++++|.+.. .|..+ +++++|++|++++|. +..+| .++++++|++|++++|. +..+|.+..+..|+.++++
T Consensus 117 L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~--i~~~~~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 117 LDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG--VHDYRGIEDFPKLNQLYAF 189 (197)
T ss_dssp EECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC--CCCCTTGGGCSSCCEEEEC
T ss_pred EEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC--CcChHHhccCCCCCEEEee
Confidence 9999999984 67778 999999999999996 99998 69999999999999976 5556677778889999887
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=8.8e-12 Score=117.50 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=109.8
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCc-CChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKS-LPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~-LP~si~~~L~~L 536 (608)
+++|+.|.+.++... .. + .+..+++|+.|++++|.+..++ .+..+++|++|++++|.+.. .|..+ +++++|
T Consensus 43 l~~L~~L~l~~n~i~----~l-~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINVT----DL-T-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL-SGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCCS----CC-T-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTC
T ss_pred cCCccEEeccCCCcc----Ch-H-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhh-cCCCCC
Confidence 778999999888765 22 2 5788899999999999776654 78889999999999998884 67778 999999
Q ss_pred cEEecccccccc-chhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc-CCCcccchhcCCCCCCCCC
Q 039772 537 YTLDMPFSYIEH-TADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL-HPCCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 537 ~~L~L~~~~l~~-lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~-~~~~~~~~~l~~L~~L~~L 608 (608)
++|++++|.+.. .|..++++++|++|++++|. ....+|.++.+.+|+.++++ +....++. +..+++|+.|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-~i~~~~~l~~l~~L~~L~l~~n~i~~~~~-l~~l~~L~~L 186 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQL 186 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT-BCCCCGGGGGCSSCCEEECTTBCCCCCTT-GGGCSSCCEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCC-CccccHhhcCCCCCCEEECCCCCCcChHH-hccCCCCCEE
Confidence 999999997774 77889999999999999843 24446677778889999988 32333444 6777777653
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.31 E-value=5.6e-12 Score=144.06 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=44.8
Q ss_pred CccCcEEeccccccc-cchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeeccCC---CcccchhcCCCCCCCC
Q 039772 533 LLNLYTLDMPFSYIE-HTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISALHP---CCCTEDLLGRLPNLQN 607 (608)
Q Consensus 533 L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~~~---~~~~~~~l~~L~~L~~ 607 (608)
+.+|++|||++|.+. .+|.++++|++|+.|++++|.... .+| .+++|+.|+.++++++ +..+.. ++.|++|+.
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~ 708 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTE 708 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCE
Confidence 345556666666444 667777777777777777765332 367 7777777777777722 223334 666666654
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.30 E-value=3.5e-12 Score=126.95 Aligned_cols=128 Identities=19% Similarity=0.143 Sum_probs=67.7
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLL 512 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L 512 (608)
+..+++|.+..+......+..+ +++|++|.+.++... ...+..|..+++|+.|++++|.+..+| ..+..+.+|
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC----ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 3456666665555442222222 556666666665443 233344555566666666666555443 345555555
Q ss_pred cEEEecCCCCCcCCh-HHHhcCccCcEEecccccccc--chhHhcccccCcEEEecCCC
Q 039772 513 RYLKLNIPSLKSLPS-SLLSNLLNLYTLDMPFSYIEH--TADEFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 513 r~L~l~~~~i~~LP~-si~~~L~~L~~L~L~~~~l~~--lP~~i~~L~~L~~L~l~~~~ 568 (608)
++|++++|.+..++. .+ +++++|++|++++|.+.. +|..++++++|++|++++|.
T Consensus 103 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 103 QKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cEEECCCCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 555555555555544 33 555555555555555443 45555555555555555543
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=6.9e-12 Score=119.26 Aligned_cols=126 Identities=23% Similarity=0.264 Sum_probs=110.3
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
.++++.|.+.++... ...+..|..+++|+.|++++|.+..+|.. +..+.+|++|++++|.+..+|...|+++++|
T Consensus 27 ~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 678999999998776 45566789999999999999999988765 5889999999999999999988754899999
Q ss_pred cEEeccccccccchhH-hcccccCcEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 537 YTLDMPFSYIEHTADE-FWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
++|++++|.+..+|.. ++++++|++|++++|. +..+| .++.+..|+.++++
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEec
Confidence 9999999999998875 7899999999999976 55677 47889999999988
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.30 E-value=8.2e-12 Score=130.89 Aligned_cols=129 Identities=20% Similarity=0.133 Sum_probs=96.3
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLL 512 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L 512 (608)
...++.+.+..+.......... +++|++|.+.++... ...+..|..+++|+.|++++|.+..+| ..++.+++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 3567788887776553222222 788888888887765 455567788888888888888887665 457888888
Q ss_pred cEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCC
Q 039772 513 RYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 513 r~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 568 (608)
++|++++|.+..+|..+|+++++|++|++++|.+..+|. .++++++|++|++++|.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 888888888888887755788888888888887776654 57888888888888865
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.30 E-value=3.5e-12 Score=141.76 Aligned_cols=148 Identities=17% Similarity=0.104 Sum_probs=118.9
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~ 511 (608)
.+..++++.+..+......+..+ +++|++|.+.++... ...+..|..+++|++|++++|.+..+ |..++.+.+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc----ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 45788999999888775444444 889999999998775 46667889999999999999998876 788999999
Q ss_pred ccEEEecCCCCCcCC-hHHHhcCccCcEEeccccccc--cchhHhcccccCcEEEecCCCCCCcCC-C-CCCCCcccc--
Q 039772 512 LRYLKLNIPSLKSLP-SSLLSNLLNLYTLDMPFSYIE--HTADEFWKMNKLRHLNFGSITLPAHPG-K-YCGSLENLN-- 584 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP-~si~~~L~~L~~L~L~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~~l-P-~i~~L~~L~-- 584 (608)
|++|++++|.+..+| ..+ +++++|++|++++|.+. .+|..++++++|++|++++|. +..+ | .++.+..|+
T Consensus 106 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY--IQTITVNDLQFLRENPQV 182 (606)
T ss_dssp CCEEECTTSCCCCSSSSCC-TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC--CCEECTTTTHHHHHCTTC
T ss_pred CCEEEccCCcccccccccc-CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc--ceecChhhhhhhhccccc
Confidence 999999999998887 566 99999999999999776 579999999999999999976 4444 3 566654443
Q ss_pred --eeecc
Q 039772 585 --FISAL 589 (608)
Q Consensus 585 --~l~~~ 589 (608)
.++++
T Consensus 183 l~~L~l~ 189 (606)
T 3vq2_A 183 NLSLDMS 189 (606)
T ss_dssp CCEEECT
T ss_pred cceeecc
Confidence 45555
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.29 E-value=8.6e-12 Score=133.47 Aligned_cols=145 Identities=21% Similarity=0.150 Sum_probs=122.8
Q ss_pred ccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCcc
Q 039772 457 YDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 535 (608)
Q Consensus 457 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~ 535 (608)
..++++.|.+.++... ...+..|..+++|+.|+|++|.+..++ ..+..+.+|++|+|++|.+..+|+..|+.+++
T Consensus 73 ~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp CCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCCCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 3789999999999876 566778999999999999999998665 78899999999999999999999875489999
Q ss_pred CcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeecc-CCCcccchhcCCCCCCCC
Q 039772 536 LYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL-HPCCCTEDLLGRLPNLQN 607 (608)
Q Consensus 536 L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~-~~~~~~~~~l~~L~~L~~ 607 (608)
|++|+|++|.+..+|. .+.++++|++|++++ +..+..+| .++.|..|+.|+++ +....++. +..+++|+.
T Consensus 149 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 222 (452)
T 3zyi_A 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGE-LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEE 222 (452)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCC-CTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCE
T ss_pred CCEEECCCCCcceeCHhHHhcCCcccEEeCCC-CCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccE
Confidence 9999999999999987 789999999999998 44466677 58889999999998 33344555 666666654
No 39
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.29 E-value=1.2e-11 Score=123.14 Aligned_cols=147 Identities=17% Similarity=0.067 Sum_probs=100.0
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFLL 512 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~L 512 (608)
...++.|.+..+.........+ +++|++|.+.++... ...+..|..+++|+.|++++|.+..++. .++.+++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC----ccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 4567777777776653333333 778888888877765 4555667778888888888888776654 57778888
Q ss_pred cEEEecCCCCCc--CChHHHhcCccCcEEeccccccccchh-HhcccccCc----EEEecCCCCCCcCCC-CCCCCcccc
Q 039772 513 RYLKLNIPSLKS--LPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLR----HLNFGSITLPAHPGK-YCGSLENLN 584 (608)
Q Consensus 513 r~L~l~~~~i~~--LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~----~L~l~~~~~~~~~lP-~i~~L~~L~ 584 (608)
++|++++|.+.. +|..+ +++++|++|++++|.+..+|. .+..+.+|+ +|++++|. +..+| ......+|+
T Consensus 127 ~~L~l~~n~l~~~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~--l~~~~~~~~~~~~L~ 203 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP--MNFIQPGAFKEIRLK 203 (276)
T ss_dssp CEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC--CCEECTTSSCSCCEE
T ss_pred CEEECcCCccceecCchhh-ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc--ccccCccccCCCccc
Confidence 888888887765 67777 888888888888887776653 566666555 66666654 44455 444444566
Q ss_pred eeecc
Q 039772 585 FISAL 589 (608)
Q Consensus 585 ~l~~~ 589 (608)
.++++
T Consensus 204 ~L~L~ 208 (276)
T 2z62_A 204 ELALD 208 (276)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 66665
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=8.4e-12 Score=138.41 Aligned_cols=128 Identities=20% Similarity=0.141 Sum_probs=83.6
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCCcc
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFLLR 513 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~Lr 513 (608)
..++.+.+..+.......... +++|++|.+.++... ..++..|..+++|+.|+|++|.+..+|+ .++.+++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 445666666655442222222 667777777776654 4455567777777777777777766554 356777777
Q ss_pred EEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCC
Q 039772 514 YLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 514 ~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 568 (608)
+|+|++|.+..+|+.+|+++++|++|+|++|.+..+|. .++++++|++|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 77777777777776654677777777777776665544 57777777777777754
No 41
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.28 E-value=1.3e-11 Score=122.05 Aligned_cols=139 Identities=17% Similarity=0.056 Sum_probs=113.1
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCcc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLR 513 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr 513 (608)
...++.+.+..+.... .+.. +++|+.|.+.++... ...+ +..+++|+.|++++|.+..+|.... .+|+
T Consensus 40 l~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~L~~N~i~----~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQIS----DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp HTTCSEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCC----CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred cCcCcEEECcCCCccc--chHHhhCCCCCEEECCCCccC----CChh--hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 3567888888877652 2233 889999999988775 3333 8899999999999999988876444 8999
Q ss_pred EEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 514 YLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 514 ~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
+|++++|.+..+|. + +++++|++|++++|.+..+| .++.+++|++|++++|. +..++.++.+..|+.++++
T Consensus 110 ~L~L~~N~l~~~~~-l-~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~--i~~~~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 110 RLFLDNNELRDTDS-L-IHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE--ITNTGGLTRLKKVNWIDLT 180 (263)
T ss_dssp EEECCSSCCSBSGG-G-TTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC--CCBCTTSTTCCCCCEEEEE
T ss_pred EEEccCCccCCChh-h-cCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc--CcchHHhccCCCCCEEeCC
Confidence 99999999998874 7 99999999999999999887 68999999999999976 4444667778888888887
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.28 E-value=6.9e-12 Score=135.12 Aligned_cols=148 Identities=19% Similarity=0.119 Sum_probs=99.5
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~ 511 (608)
.+..++.|.+..+......+..+ +++|++|.+.++... ...+..|..+++|+.|+|++|.+..+|.. +..+.+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 34567777777776664333344 777888888777654 44556677777788888877777777653 567777
Q ss_pred ccEEEecCCCCCcCCh-HHHhcCccCcEEeccccccccch-hHhcccccCcEEEecCCCCCCcCCC--CCCCCcccceee
Q 039772 512 LRYLKLNIPSLKSLPS-SLLSNLLNLYTLDMPFSYIEHTA-DEFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFIS 587 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP~-si~~~L~~L~~L~L~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~ 587 (608)
|++|++++|.+..+++ .+ +++++|++|++++|.+..++ ..++++++|++|++++|. +..+| .++++..|+.++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CCEEECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEEE
T ss_pred CCEEECCCCccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc--CcccChhHhcccCCCcEEe
Confidence 7777777777775543 44 77777777777777666553 367777777777777754 44455 456666666666
Q ss_pred cc
Q 039772 588 AL 589 (608)
Q Consensus 588 ~~ 589 (608)
++
T Consensus 183 l~ 184 (477)
T 2id5_A 183 LR 184 (477)
T ss_dssp EE
T ss_pred CC
Confidence 65
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.28 E-value=3.1e-11 Score=123.42 Aligned_cols=145 Identities=13% Similarity=0.084 Sum_probs=106.7
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCc
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLL 512 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L 512 (608)
.+..++.+.+..+.........+ +++|++|.+.++... ...+..|..+++|+.|++++|.+..+|..+. .+|
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS----KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC----eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 34678888888887764443344 889999999988775 4556778899999999999999988887765 688
Q ss_pred cEEEecCCCCCcCChHHHhcCccCcEEeccccccc---cchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeec
Q 039772 513 RYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIE---HTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISA 588 (608)
Q Consensus 513 r~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~---~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~ 588 (608)
++|++++|.+..+|...|+++++|++|++++|.+. ..|..++++++|++|++++|. +..+| .+. ..|+.+++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~l~~~~~--~~L~~L~l 199 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLP--PSLTELHL 199 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC--CCSCCSSCC--TTCSEEEC
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc--cccCCcccc--ccCCEEEC
Confidence 88888888888887764488888888888888664 456677888888888887754 44455 332 34444444
Q ss_pred c
Q 039772 589 L 589 (608)
Q Consensus 589 ~ 589 (608)
+
T Consensus 200 ~ 200 (330)
T 1xku_A 200 D 200 (330)
T ss_dssp T
T ss_pred C
Confidence 4
No 44
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=9.5e-12 Score=114.00 Aligned_cols=125 Identities=19% Similarity=0.191 Sum_probs=84.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCc-CChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKS-LPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~-LP~si~~~L~~L 536 (608)
.++++.|.+.++.... ..++..+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..+ +++++|
T Consensus 23 ~~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTC
T ss_pred cccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCC
Confidence 4567777776665431 13344466777777777777777766 667777777777777777776 56655 667777
Q ss_pred cEEeccccccccch--hHhcccccCcEEEecCCCCCCcCCCC-----CCCCcccceeecc
Q 039772 537 YTLDMPFSYIEHTA--DEFWKMNKLRHLNFGSITLPAHPGKY-----CGSLENLNFISAL 589 (608)
Q Consensus 537 ~~L~L~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~lP~-----i~~L~~L~~l~~~ 589 (608)
++|++++|.+..+| ..++++++|++|++++|. +..+|. +..+..|+.+++.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE--VTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG--GGTSTTHHHHHHTTCSSCCEETTE
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc--CcchHHHHHHHHHhCccCcEecCC
Confidence 77777777777766 567777777777777754 333442 4456777777766
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=4.4e-12 Score=145.12 Aligned_cols=125 Identities=16% Similarity=0.183 Sum_probs=75.8
Q ss_pred hHHhhccccceeEeecCCCcCcc------------------CCcccC--CCCCccEEEecCCCC-CcCChHHHhcCccCc
Q 039772 479 WEKICGMFKLLRVLDLGSLVLIQ------------------YPSGIE--NLFLLRYLKLNIPSL-KSLPSSLLSNLLNLY 537 (608)
Q Consensus 479 ~~~~~~~~~~Lr~L~L~~~~l~~------------------lp~~i~--~L~~Lr~L~l~~~~i-~~LP~si~~~L~~L~ 537 (608)
+|..+..+++|+.|+|++|.+.. +|+.++ +|++|++|+|++|.+ ..+|.++ ++|++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCC
Confidence 44556667777777777777665 676666 677777777776653 3666666 7777777
Q ss_pred EEeccccc-cc--cchhHhcccc-------cCcEEEecCCCCCCcCCCC---CCCCcccceeecc-CCCcccchhcCCCC
Q 039772 538 TLDMPFSY-IE--HTADEFWKMN-------KLRHLNFGSITLPAHPGKY---CGSLENLNFISAL-HPCCCTEDLLGRLP 603 (608)
Q Consensus 538 ~L~L~~~~-l~--~lP~~i~~L~-------~L~~L~l~~~~~~~~~lP~---i~~L~~L~~l~~~-~~~~~~~~~l~~L~ 603 (608)
+|+|++|. +. .+|.++++|+ +|++|++++|.. ..+|. +++|..|+.|+++ +....++. ++.++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~-~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCCBCCC-CCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcccchh-hcCCC
Confidence 77776664 55 3666666665 666666666552 24553 5556666666665 21223333 55555
Q ss_pred CCCC
Q 039772 604 NLQN 607 (608)
Q Consensus 604 ~L~~ 607 (608)
+|+.
T Consensus 596 ~L~~ 599 (876)
T 4ecn_A 596 KLTD 599 (876)
T ss_dssp EESE
T ss_pred cceE
Confidence 5543
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.27 E-value=2.8e-12 Score=143.29 Aligned_cols=125 Identities=15% Similarity=0.164 Sum_probs=96.2
Q ss_pred hHHhhccccceeEeecCCCcCcc------------------CCcccC--CCCCccEEEecCCCCC-cCChHHHhcCccCc
Q 039772 479 WEKICGMFKLLRVLDLGSLVLIQ------------------YPSGIE--NLFLLRYLKLNIPSLK-SLPSSLLSNLLNLY 537 (608)
Q Consensus 479 ~~~~~~~~~~Lr~L~L~~~~l~~------------------lp~~i~--~L~~Lr~L~l~~~~i~-~LP~si~~~L~~L~ 537 (608)
+|..+.++++|++|+|++|.+.. +|+.++ ++++|++|++++|.+. .+|.++ +++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCC
Confidence 45668888899999999998886 888888 8999999999888754 788888 8899999
Q ss_pred EEeccccc-cc--cchhHhccc------ccCcEEEecCCCCCCcCCCC---CCCCcccceeeccCC-Cc-ccchhcCCCC
Q 039772 538 TLDMPFSY-IE--HTADEFWKM------NKLRHLNFGSITLPAHPGKY---CGSLENLNFISALHP-CC-CTEDLLGRLP 603 (608)
Q Consensus 538 ~L~L~~~~-l~--~lP~~i~~L------~~L~~L~l~~~~~~~~~lP~---i~~L~~L~~l~~~~~-~~-~~~~~l~~L~ 603 (608)
+|++++|. +. .+|.++++| ++|++|++++|. +..+|. +++|..|+.++++++ .. .++. ++.++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~-~~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--LKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--CSSCCCHHHHTTCTTCCEEECCSCCCEEECCC-CEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc--CCccCchhhhccCCCCCEEeCcCCcCccchhh-hCCCC
Confidence 99999886 77 488888887 888888888866 446774 777888888888722 11 2334 55555
Q ss_pred CCCC
Q 039772 604 NLQN 607 (608)
Q Consensus 604 ~L~~ 607 (608)
+|+.
T Consensus 354 ~L~~ 357 (636)
T 4eco_A 354 KLAS 357 (636)
T ss_dssp EESE
T ss_pred CCCE
Confidence 5554
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.27 E-value=8.4e-12 Score=130.81 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=111.6
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
+++++.|.+.++... ..++..|..+++|++|+++++.+..+| ..++.+++|++|++++|.+..+|+..|+++++|
T Consensus 44 l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCchh----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 789999999998765 566677899999999999999998776 489999999999999999998876533999999
Q ss_pred cEEeccccccccchhH-hcccccCcEEEecCCCCCCcCCC--CCCCCcccceeeccC
Q 039772 537 YTLDMPFSYIEHTADE-FWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISALH 590 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~~ 590 (608)
++|++++|.+..+|.. ++++++|++|++++|. +..+| .++.+..|+.++++.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTSSCTTCCEEECCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc--cCccChhhccCCCCCCEEECCC
Confidence 9999999999999987 4899999999999976 45554 688899999999983
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.27 E-value=1.4e-11 Score=131.22 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=122.6
Q ss_pred ccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCcc
Q 039772 457 YDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 535 (608)
Q Consensus 457 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~ 535 (608)
..++++.|.+.++... ...+..|..+++|+.|+|++|.+..++ ..+..+.+|++|+|++|.+..+|...|..+.+
T Consensus 62 ~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp CCTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 3788999999999876 566678999999999999999998765 67899999999999999999998854499999
Q ss_pred CcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeecc-CCCcccchhcCCCCCCCCC
Q 039772 536 LYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL-HPCCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 536 L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~-~~~~~~~~~l~~L~~L~~L 608 (608)
|++|+|++|.+..+|. .+.++++|++|++++ +..+..+| .+.+|.+|+.|+++ +.-..++. +..+++|+.|
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~-~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 212 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGE-LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDEL 212 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCC-CTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEE
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCC-CCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEE
Confidence 9999999999999887 789999999999998 33456666 68889999999998 33445555 6666666643
No 49
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.27 E-value=7.2e-12 Score=121.89 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=82.1
Q ss_pred cceEEEEEeccc-ccccccccc--cccceEEeecC-CCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCc
Q 039772 437 KKVKRLNAVKRQ-EDFAYLDYY--DSQLHSLLCCS-PESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLL 512 (608)
Q Consensus 437 ~~~r~l~~~~~~-~~~~~~~~~--~~~LrsL~l~~-~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L 512 (608)
..++.+.+..+. ........+ +++|++|.+.+ +... ...+..|..+++|+.|++++|.+..+|. ++.+.+|
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~----~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L 129 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT----YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYST 129 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC----EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBC
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee----EcCHHHhCCCCCCCEEeCCCCCCccccc-ccccccc
Confidence 445555555553 332121122 55566666555 4433 2333455566666666666666665554 5555555
Q ss_pred c---EEEecCC-CCCcCChHHHhcCccCc-EEeccccccccchhHhcccccCcEEEecCCCCCCcCCC--CCCCC-cccc
Q 039772 513 R---YLKLNIP-SLKSLPSSLLSNLLNLY-TLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK--YCGSL-ENLN 584 (608)
Q Consensus 513 r---~L~l~~~-~i~~LP~si~~~L~~L~-~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L-~~L~ 584 (608)
+ +|++++| .+..+|+..|.++++|+ +|++++|.+..+|..+...++|++|++++|. .+..+| .++.+ ..|+
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~-~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK-YLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT-TCCEECTTTTTTCSBCCS
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC-CcccCCHHHhhccccCCc
Confidence 5 6666666 66666654336666666 6666666666666654444666666666641 134454 45556 6677
Q ss_pred eeecc
Q 039772 585 FISAL 589 (608)
Q Consensus 585 ~l~~~ 589 (608)
.++++
T Consensus 209 ~L~l~ 213 (239)
T 2xwt_C 209 LLDVS 213 (239)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 77766
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.27 E-value=6.9e-12 Score=129.61 Aligned_cols=147 Identities=19% Similarity=0.149 Sum_probs=112.6
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFLL 512 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L 512 (608)
+..++.|.+..+.......... +++|++|.+.++... ...+..|..+++|+.|++++|.+..+|.. ++.+++|
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN----TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC----ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 4578888888877664333234 788888888887665 45556678888888888888888888765 7888888
Q ss_pred cEEEecCCCCCcCCh--HHHhcCccCcEEecccc-ccccch-hHhcccccCcEEEecCCCCCCcC-CC-CCCCCccccee
Q 039772 513 RYLKLNIPSLKSLPS--SLLSNLLNLYTLDMPFS-YIEHTA-DEFWKMNKLRHLNFGSITLPAHP-GK-YCGSLENLNFI 586 (608)
Q Consensus 513 r~L~l~~~~i~~LP~--si~~~L~~L~~L~L~~~-~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~-lP-~i~~L~~L~~l 586 (608)
++|++++|.+..+|. .+ +++++|++|++++| .+..+| ..++++++|++|++++|. +.. .| .+++++.|+.+
T Consensus 127 ~~L~L~~n~l~~l~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp SEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEE
T ss_pred CEEECCCCCCcccCchhhh-ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC--cCccCHHHHhccccCCee
Confidence 888888888888887 55 88888888888888 577764 478888888888888865 333 36 78888888888
Q ss_pred ecc
Q 039772 587 SAL 589 (608)
Q Consensus 587 ~~~ 589 (608)
+++
T Consensus 204 ~l~ 206 (353)
T 2z80_A 204 ILH 206 (353)
T ss_dssp EEE
T ss_pred cCC
Confidence 887
No 51
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=5.6e-12 Score=113.04 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=85.8
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCc-CChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKS-LPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~-LP~si~~~L~~L 536 (608)
.++++.|.+.++.... ...+..+..+++|+.|++++|.+..+ ..++.+++|++|++++|.+.. +|..+ +++++|
T Consensus 16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTC
T ss_pred CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCC
Confidence 4567777777765531 13344567777888888888877766 667778888888888887776 66655 778888
Q ss_pred cEEeccccccccch--hHhcccccCcEEEecCCCCCCcCCCC-----CCCCcccceeecc
Q 039772 537 YTLDMPFSYIEHTA--DEFWKMNKLRHLNFGSITLPAHPGKY-----CGSLENLNFISAL 589 (608)
Q Consensus 537 ~~L~L~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~lP~-----i~~L~~L~~l~~~ 589 (608)
++|++++|.+..+| ..++.+++|++|++++|. +..+|. ++.+..|+.++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE--VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG--GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc--ccchHHHHHHHHHHCCCcccccCC
Confidence 88888888777765 677788888888888754 444442 4446666666553
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.27 E-value=9e-12 Score=121.23 Aligned_cols=165 Identities=12% Similarity=0.106 Sum_probs=130.5
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCC-CCCCCCcchHHhhccccceeEeecCC-CcCccCC-cccCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPE-SRHFDPMDWEKICGMFKLLRVLDLGS-LVLIQYP-SGIENL 509 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~-~~~~~~~~~~~~~~~~~~Lr~L~L~~-~~l~~lp-~~i~~L 509 (608)
.+..++.+.+..+.......... +++|++|.+.++. .. .+.+..|..+++|+.|++++ +.+..+| ..+..+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ----QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC----EECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc----eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 45689999999988774444344 8999999999986 54 45556789999999999998 8888777 467889
Q ss_pred CCccEEEecCCCCCcCChHHHhcCccCc---EEecccc-ccccchh-HhcccccCc-EEEecCCCCCCcCCC-CCCCCcc
Q 039772 510 FLLRYLKLNIPSLKSLPSSLLSNLLNLY---TLDMPFS-YIEHTAD-EFWKMNKLR-HLNFGSITLPAHPGK-YCGSLEN 582 (608)
Q Consensus 510 ~~Lr~L~l~~~~i~~LP~si~~~L~~L~---~L~L~~~-~l~~lP~-~i~~L~~L~-~L~l~~~~~~~~~lP-~i~~L~~ 582 (608)
++|++|++++|.+..+|. + +.+.+|+ +|++++| .+..+|. .+.++++|+ +|++++|. +..+| .......
T Consensus 105 ~~L~~L~l~~n~l~~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMFPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--FTSVQGYAFNGTK 180 (239)
T ss_dssp TTCCEEEEEEECCCSCCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC--CCEECTTTTTTCE
T ss_pred CCCCEEeCCCCCCccccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC--CcccCHhhcCCCC
Confidence 999999999999999998 7 8888888 9999999 9999987 589999999 99999976 55788 5544578
Q ss_pred cceeeccCC--C-cccchhcCCC-CCCCC
Q 039772 583 LNFISALHP--C-CCTEDLLGRL-PNLQN 607 (608)
Q Consensus 583 L~~l~~~~~--~-~~~~~~l~~L-~~L~~ 607 (608)
|+.++++++ - ...+..++.+ ++|+.
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 999999833 2 2223325666 66664
No 53
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=8.7e-12 Score=114.24 Aligned_cols=132 Identities=18% Similarity=0.064 Sum_probs=113.0
Q ss_pred CCcceEEEEEeccccc-ccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc-CCcccCCCC
Q 039772 435 SPKKVKRLNAVKRQED-FAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ-YPSGIENLF 510 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~-~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~i~~L~ 510 (608)
.+..++.|.+..+... ...+... +++|+.|.+.++... .. ..+..+++|+.|++++|.+.. +|..+..++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI----SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC----CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC----Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 4578999999988765 2344443 899999999999875 23 678899999999999999987 777777899
Q ss_pred CccEEEecCCCCCcCC--hHHHhcCccCcEEeccccccccchh----HhcccccCcEEEecCCCCCCcCCC
Q 039772 511 LLRYLKLNIPSLKSLP--SSLLSNLLNLYTLDMPFSYIEHTAD----EFWKMNKLRHLNFGSITLPAHPGK 575 (608)
Q Consensus 511 ~Lr~L~l~~~~i~~LP--~si~~~L~~L~~L~L~~~~l~~lP~----~i~~L~~L~~L~l~~~~~~~~~lP 575 (608)
+|++|++++|.+..+| ..+ +.+++|++|++++|.+..+|. .+..+++|++|++++|. ...+|
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~ 163 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE--DQEAP 163 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT--SCBCC
T ss_pred CCCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC--hhhcc
Confidence 9999999999999987 678 999999999999999999987 89999999999999955 55566
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.26 E-value=8.9e-12 Score=138.23 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=112.5
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
+++++.+.+.++... ..++..|..+++|++|+|++|.+..+| ..++.+++|++|+|++|.+..+|+..|+++++|
T Consensus 50 l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 789999999988775 567778999999999999999998776 489999999999999999998887655999999
Q ss_pred cEEeccccccccchhH-hcccccCcEEEecCCCCCCcCCC--CCCCCcccceeeccC
Q 039772 537 YTLDMPFSYIEHTADE-FWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISALH 590 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~~ 590 (608)
++|+|++|.+..+|.. ++++++|++|++++|. +..+| .+++|..|+.|+++.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTTTCTTCCEEECTT
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc--CCCCChhhhhcCCcCcEEECcC
Confidence 9999999999999986 4999999999999976 44454 788999999999983
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.26 E-value=3.6e-12 Score=131.77 Aligned_cols=127 Identities=19% Similarity=0.082 Sum_probs=76.7
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
.++++.|.+.++... ..++..|..+++|+.|++++|.+..++ ..++.+++|++|++++|.+..+|...|+++++|
T Consensus 51 ~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 51 TEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred cccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 456666666666554 334445666666666666666666443 456666666666666666666666522666666
Q ss_pred cEEeccccccccchh--HhcccccCcEEEecCCCCCCcCC-C-CCCCCcccceeecc
Q 039772 537 YTLDMPFSYIEHTAD--EFWKMNKLRHLNFGSITLPAHPG-K-YCGSLENLNFISAL 589 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~l-P-~i~~L~~L~~l~~~ 589 (608)
++|++++|.+..+|. .++++++|++|++++|. ....+ | .++++..|+.++++
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECC
Confidence 666666666666665 56666666666666632 12333 3 55666666666665
No 56
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=5.8e-12 Score=116.46 Aligned_cols=124 Identities=14% Similarity=0.088 Sum_probs=96.5
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
+++|+.|.+.++... .. +......++|+.|++++|.+..+ +.++.+++|++|++++|.+..+|+.+|+.+++|+
T Consensus 18 ~~~L~~L~l~~n~l~----~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP----VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCC----SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCc----hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 677888888887664 22 33333334888999998888877 5788888899999998888888866558888999
Q ss_pred EEeccccccccchh--HhcccccCcEEEecCCCCCCcCCC-C----CCCCcccceeecc
Q 039772 538 TLDMPFSYIEHTAD--EFWKMNKLRHLNFGSITLPAHPGK-Y----CGSLENLNFISAL 589 (608)
Q Consensus 538 ~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~lP-~----i~~L~~L~~l~~~ 589 (608)
+|++++|.+..+|. .++++++|++|++++|. +..+| . ++.+..|+.++++
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~--i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP--VTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG--GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC--CCCcHhHHHHHHHHCCccceeCCC
Confidence 99999888888887 78888889999998866 55667 4 6668888888876
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.26 E-value=6.7e-12 Score=126.89 Aligned_cols=142 Identities=18% Similarity=0.096 Sum_probs=81.1
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc--ccCCCCCccEEEecCCCCCcCC-hHHHhcCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS--GIENLFLLRYLKLNIPSLKSLP-SSLLSNLL 534 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~--~i~~L~~Lr~L~l~~~~i~~LP-~si~~~L~ 534 (608)
+++|++|.+.++... ..+..+..+++|+.|++++|.+..+|. .+..+++|++|++++|.+..++ ..+ ++++
T Consensus 77 ~~~L~~L~Ls~n~i~-----~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~ 150 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-----TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLS 150 (306)
T ss_dssp CSCCCEEECCSCSEE-----EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT-TTCT
T ss_pred ccccCEEECCCCccc-----cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc-ccCc
Confidence 344444444444332 222335556666666666666655542 5666666666666666665433 334 6677
Q ss_pred cCcEEecccccccc--chhHhcccccCcEEEecCCCCCCcCC-C-CCCCCcccceeeccCC--CcccchhcCCCCCCCC
Q 039772 535 NLYTLDMPFSYIEH--TADEFWKMNKLRHLNFGSITLPAHPG-K-YCGSLENLNFISALHP--CCCTEDLLGRLPNLQN 607 (608)
Q Consensus 535 ~L~~L~L~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~~l-P-~i~~L~~L~~l~~~~~--~~~~~~~l~~L~~L~~ 607 (608)
+|++|++++|.+.. +|..++.+++|++|++++|. +..+ | .++++.+|+.++++++ ....+..++.+++|+.
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ--LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCC--cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 77777777775553 66677777777777777754 3444 4 6666777777777621 1122211555666554
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.26 E-value=5.7e-12 Score=140.80 Aligned_cols=146 Identities=11% Similarity=0.168 Sum_probs=122.5
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCC-CCCCCCc-chHHhhccc------cceeEeecCCCcCccCCc-
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPE-SRHFDPM-DWEKICGMF------KLLRVLDLGSLVLIQYPS- 504 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~-~~~~~~~-~~~~~~~~~------~~Lr~L~L~~~~l~~lp~- 504 (608)
...++.|.+..+......+..+ +++|+.|.+.++. .. + .+|..+..+ ++|+.|++++|.+..+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~----~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS----GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC----HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc----cccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 4678899999887665566666 8899999999987 43 3 466666665 899999999999999998
Q ss_pred -ccCCCCCccEEEecCCCCC-cCChHHHhcCccCcEEeccccccccchhHhccccc-CcEEEecCCCCCCcCCC-CCCCC
Q 039772 505 -GIENLFLLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNK-LRHLNFGSITLPAHPGK-YCGSL 580 (608)
Q Consensus 505 -~i~~L~~Lr~L~l~~~~i~-~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~-L~~L~l~~~~~~~~~lP-~i~~L 580 (608)
.++.+++|++|++++|.+. .+| .+ +++++|++|++++|.+..+|..++++++ |++|++++|. +..+| .++.+
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~--l~~lp~~~~~~ 399 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK--LKYIPNIFDAK 399 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC--CSSCCSCCCTT
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc--Ccccchhhhhc
Confidence 8999999999999999998 999 78 9999999999999988899999999999 9999999977 44788 77663
Q ss_pred --cccceeecc
Q 039772 581 --ENLNFISAL 589 (608)
Q Consensus 581 --~~L~~l~~~ 589 (608)
..|+.++++
T Consensus 400 ~l~~L~~L~Ls 410 (636)
T 4eco_A 400 SVSVMSAIDFS 410 (636)
T ss_dssp CSSCEEEEECC
T ss_pred ccCccCEEECc
Confidence 478888887
No 59
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=1.8e-11 Score=118.32 Aligned_cols=130 Identities=21% Similarity=0.197 Sum_probs=114.5
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~ 511 (608)
.+..++.|.+..+......+..+ +++|+.|.+.++... .+.+..|..+++|+.|+|++|.+..+|.. +..+.+
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~----~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC----CcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 45789999999988875445544 899999999999875 45667789999999999999999988765 588999
Q ss_pred ccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCCC
Q 039772 512 LRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITL 569 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 569 (608)
|++|++++|.+..+|..+ .++.+|++|+|++|.+..+|. .+..+++|++|++++|..
T Consensus 114 L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 114 LKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 999999999999999999 999999999999999999986 688999999999999753
No 60
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=2.5e-11 Score=121.86 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=115.8
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
+++|+.|.+.++... .. +.+..+++|+.|++++|.+..+|+ ++.+++|++|++++|.+..+|. + +.+++|+
T Consensus 45 l~~L~~L~l~~~~i~----~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~ 115 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK----SV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLK 115 (291)
T ss_dssp HHTCCEEECTTSCCC----CC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCC
T ss_pred cCcccEEEccCCCcc----cC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCC
Confidence 778999999888765 22 347889999999999999998887 9999999999999999999876 8 9999999
Q ss_pred EEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc-CCCcccchhcCCCCCCCCC
Q 039772 538 TLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL-HPCCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 538 ~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~-~~~~~~~~~l~~L~~L~~L 608 (608)
+|++++|.+..+| .++++++|++|++++|. +..++.++.+..|+.++++ +.-..++. +..+++|+.|
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L 183 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 183 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSSC--CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCCc--CCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEE
Confidence 9999999999986 59999999999999976 5555678889999999998 33334444 6677776643
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.25 E-value=7.9e-12 Score=138.86 Aligned_cols=127 Identities=19% Similarity=0.126 Sum_probs=114.3
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCCccEEEecCCCCCcC-ChHHHhcCcc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSL-PSSLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~~~~i~~L-P~si~~~L~~ 535 (608)
.++++.|.+.++... ...+..|..+++|++|++++|.+..+ |..++.+++|++|++++|.+..+ |..+ +++++
T Consensus 31 ~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLK----ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTS 105 (606)
T ss_dssp CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS-TTCTT
T ss_pred CCCcCEEECCCCCcC----EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc-CCccc
Confidence 789999999999876 56667899999999999999999876 56789999999999999999988 6777 99999
Q ss_pred CcEEeccccccccch-hHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 536 LYTLDMPFSYIEHTA-DEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 536 L~~L~L~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
|++|++++|.+..+| ..++++++|++|++++|......+| .+++|..|+.++++
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 999999999998887 5899999999999999875444689 99999999999998
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.25 E-value=1.1e-11 Score=125.79 Aligned_cols=164 Identities=16% Similarity=0.078 Sum_probs=126.0
Q ss_pred CCCcceEEEEEecccccccccccc--c-----ccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc---CC
Q 039772 434 KSPKKVKRLNAVKRQEDFAYLDYY--D-----SQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ---YP 503 (608)
Q Consensus 434 ~~~~~~r~l~~~~~~~~~~~~~~~--~-----~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~---lp 503 (608)
.....+++|.+..+..... +... + ++|+.|.+.++... ...+..|..+++|+.|++++|.+.. +|
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL----NFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC----CCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc----cchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 3457889999998887643 3322 3 89999999998876 4666788999999999999998642 45
Q ss_pred ccc--CCCCCccEEEecCCCCCcC---ChHHHhcCccCcEEeccccccccch--hHhcccccCcEEEecCCCCCCcCCC-
Q 039772 504 SGI--ENLFLLRYLKLNIPSLKSL---PSSLLSNLLNLYTLDMPFSYIEHTA--DEFWKMNKLRHLNFGSITLPAHPGK- 575 (608)
Q Consensus 504 ~~i--~~L~~Lr~L~l~~~~i~~L---P~si~~~L~~L~~L~L~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~lP- 575 (608)
..+ +.+++|++|++++|.+..+ |..+|.++++|++|++++|.+...+ ..+..+++|++|++++|. +..+|
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~--l~~ip~ 270 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG--LKQVPK 270 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC--CSSCCS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc--cChhhh
Confidence 555 8899999999999999844 4444467899999999999887755 356778999999999977 55788
Q ss_pred CCCCCcccceeecc-CCCcccchhcCCCCCCCC
Q 039772 576 YCGSLENLNFISAL-HPCCCTEDLLGRLPNLQN 607 (608)
Q Consensus 576 ~i~~L~~L~~l~~~-~~~~~~~~~l~~L~~L~~ 607 (608)
.+. .+|+.++++ +.-..++. +..+++|+.
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRNPS-PDELPQVGN 300 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSCCC-TTTSCEEEE
T ss_pred hcc--CCceEEECCCCCCCCChh-HhhCCCCCE
Confidence 776 888999998 33333455 677777664
No 63
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.25 E-value=1.9e-11 Score=131.63 Aligned_cols=145 Identities=21% Similarity=0.204 Sum_probs=119.9
Q ss_pred ccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCCccEEEecCCCCCcCChHHHhcCcc
Q 039772 457 YDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 535 (608)
Q Consensus 457 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~ 535 (608)
..++++.|.+.++... ...+..|..+++|+.|+|++|.+..+ |..++.+++|++|+|++|.+..+|...|+++++
T Consensus 30 ~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 30 IPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 3778999999998876 56677899999999999999999866 788999999999999999999999875599999
Q ss_pred CcEEeccccccccc-hhHhcccccCcEEEecCCCCCCcCC-C-CCCCCcccceeeccCC--CcccchhcCCCCCCCC
Q 039772 536 LYTLDMPFSYIEHT-ADEFWKMNKLRHLNFGSITLPAHPG-K-YCGSLENLNFISALHP--CCCTEDLLGRLPNLQN 607 (608)
Q Consensus 536 L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~l-P-~i~~L~~L~~l~~~~~--~~~~~~~l~~L~~L~~ 607 (608)
|++|+|++|.+..+ |..+.++++|++|++++|. +..+ | .++.+.+|+.++++.+ ...++..+..+++|+.
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDND--LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT--CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCc--cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 99999999988766 5589999999999999976 4444 4 8888999999999822 2223322566666654
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=1.2e-11 Score=141.38 Aligned_cols=146 Identities=12% Similarity=0.174 Sum_probs=123.4
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCC-CCCCCCc-chHHhhcccc-------ceeEeecCCCcCccCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPE-SRHFDPM-DWEKICGMFK-------LLRVLDLGSLVLIQYPS 504 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~-~~~~~~~-~~~~~~~~~~-------~Lr~L~L~~~~l~~lp~ 504 (608)
...++.|.+..+......+..+ +++|+.|.+.++. .. . .+|..+..+. +|+.|++++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls----g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS----AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC----HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc----cccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 5678999999887665566655 8999999999987 43 3 4566566555 99999999999999998
Q ss_pred --ccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhccccc-CcEEEecCCCCCCcCCC-CCCCC
Q 039772 505 --GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNK-LRHLNFGSITLPAHPGK-YCGSL 580 (608)
Q Consensus 505 --~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~-L~~L~l~~~~~~~~~lP-~i~~L 580 (608)
.++.+++|++|++++|.+..+| .+ +++++|+.|+|++|.+..+|.+++++++ |++|++++|. +..+| .++.+
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~--L~~lp~~~~~~ 641 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK--LKYIPNIFNAK 641 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC--CCSCCSCCCTT
T ss_pred hhhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC--CCcCchhhhcc
Confidence 9999999999999999999999 78 9999999999999988899999999999 9999999977 45788 77664
Q ss_pred c--ccceeecc
Q 039772 581 E--NLNFISAL 589 (608)
Q Consensus 581 ~--~L~~l~~~ 589 (608)
. .|+.++++
T Consensus 642 ~~~~L~~L~Ls 652 (876)
T 4ecn_A 642 SVYVMGSVDFS 652 (876)
T ss_dssp CSSCEEEEECC
T ss_pred ccCCCCEEECc
Confidence 3 48888877
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.24 E-value=3.5e-11 Score=123.14 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=90.9
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCcc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLR 513 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr 513 (608)
+..++.|.+..+......+..+ +++|++|.+.++... ...+..|..+++|+.|++++|.+..+|..+. .+|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS----KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC----ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 4577888888877664333344 788888888888765 4556778888888888888888888887766 7888
Q ss_pred EEEecCCCCCcCChHHHhcCccCcEEeccccccc---cchhHhcccccCcEEEecCC
Q 039772 514 YLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIE---HTADEFWKMNKLRHLNFGSI 567 (608)
Q Consensus 514 ~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~---~lP~~i~~L~~L~~L~l~~~ 567 (608)
+|++++|.+..+|...|+++++|++|++++|.+. ..|..++.+ +|++|++++|
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 8888888888887754388888888888888664 345555555 5555555553
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.24 E-value=1.5e-11 Score=124.42 Aligned_cols=126 Identities=20% Similarity=0.265 Sum_probs=67.3
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc--CCcccCCCCCccEEEecCCCCCcC-ChHHHhcCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ--YPSGIENLFLLRYLKLNIPSLKSL-PSSLLSNLL 534 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~--lp~~i~~L~~Lr~L~l~~~~i~~L-P~si~~~L~ 534 (608)
+++|+.|.+.++... ...+..+..+++|+.|++++|.+.. +|..+..+++|++|++++|.+..+ |..+ ++++
T Consensus 125 l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~ 199 (306)
T 2z66_A 125 LRNLIYLDISHTHTR----VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLS 199 (306)
T ss_dssp CTTCCEEECTTSCCE----ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCT
T ss_pred ccCCCEEECCCCcCC----ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCC
Confidence 455555555555443 2333445555566666666665543 555555666666666666655554 3334 5566
Q ss_pred cCcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC-CCCCC-cccceeecc
Q 039772 535 NLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK-YCGSL-ENLNFISAL 589 (608)
Q Consensus 535 ~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L-~~L~~l~~~ 589 (608)
+|++|++++|.+..+|. .+..+++|++|++++|.... ..| .+..+ ..|+.++++
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB-CSSSSCCCCCTTCCEEECT
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc-cCHHHHHhhhccCCEEEcc
Confidence 66666666665555543 45556666666666544211 133 45554 355555555
No 67
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.23 E-value=4.8e-11 Score=122.78 Aligned_cols=141 Identities=19% Similarity=0.087 Sum_probs=71.6
Q ss_pred cceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 515 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L 515 (608)
..++++.+..+....... .. +++|++|.+.++... .. +.+..+++|+.|++++|.+..+|. +..+++|++|
T Consensus 66 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~----~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT----DI--SALQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC----CC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred CCccEEEccCCccccchh-hhcCCcCCEEEccCCccc----Cc--hHHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 345555555544432111 11 555555555555432 11 235555555555555555555544 5555555555
Q ss_pred EecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 516 KLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 516 ~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
++++|.....++.+ +.+++|++|++++|.+..+|. ++++++|++|++++|. +..+|.+..+..|+.++++
T Consensus 138 ~l~~n~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 138 NLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ--IEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp ECTTCTTCCCCGGG-TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC--CCCCGGGGGCTTCCEEECC
T ss_pred ECCCCCCcccccch-hhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc--ccccccccCCCccceeecc
Confidence 55555332222334 555566666666555555554 5566666666666543 3334444455666666665
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=1.1e-11 Score=133.87 Aligned_cols=144 Identities=13% Similarity=0.027 Sum_probs=107.6
Q ss_pred cceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc-CCcccC-CCCCccE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ-YPSGIE-NLFLLRY 514 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~i~-~L~~Lr~ 514 (608)
..++.|.+..+......+ ..+++|++|.+.++... ...+..+..+++|+.|+|++|.+.. .|..+. .+++|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKIT----MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCC----SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCC----CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 456666666665542211 11677888888887765 4556677788888888888888774 455565 6888888
Q ss_pred EEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 515 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 515 L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
|+|++|.+..+|. . ..+++|++|+|++|.+..+|..++.+++|++|++++|. +..+| .++.+..|+.++++
T Consensus 174 L~Ls~N~l~~~~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~--l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 174 LNLQYNFIYDVKG-Q-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK--LVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp EECTTSCCCEEEC-C-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC--CCEECTTCCCCTTCCEEECT
T ss_pred EecCCCccccccc-c-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc--CcccchhhccCCCCCEEEcC
Confidence 8888888887766 4 56888888888888888888888888888888888866 55678 78778888888887
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.23 E-value=4.3e-11 Score=122.36 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=107.1
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 514 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~ 514 (608)
..++.+.+..+.......... +++|+.|.+.++..... ...+..+..+++|+.|++++|.+..+|..+. .+|++
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~ 196 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--GIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTE 196 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG--GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc--CcChhhccCCCCcCEEECCCCccccCCcccc--ccCCE
Confidence 456666666665543222222 66777777776655310 1344567777888888888888877776654 68888
Q ss_pred EEecCCCCCcC-ChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 515 LKLNIPSLKSL-PSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 515 L~l~~~~i~~L-P~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
|++++|.+..+ |..+ +++++|++|++++|.+..+|. .++.+++|++|++++|. +..+| .+..+..|+.++++
T Consensus 197 L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 197 LHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK--LVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp EECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC--CSSCCTTTTTCSSCCEEECC
T ss_pred EECCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc--CccCChhhccCCCcCEEECC
Confidence 88888888866 4566 889999999999998887765 78889999999999876 66788 88889999999988
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=136.06 Aligned_cols=148 Identities=17% Similarity=0.097 Sum_probs=115.9
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~ 511 (608)
.+..+++|.+..+......+..+ +++|++|.+.++... ...+..|..+++|++|++++|.+..+| ..++.+.+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 45678889888887764444344 888999999988765 455677888999999999999888665 67888999
Q ss_pred ccEEEecCCCCCcCCh-HHHhcCccCcEEecccccccc--chhHhcccccCcEEEecCCCCCCcCCC--CCCCCccc---
Q 039772 512 LRYLKLNIPSLKSLPS-SLLSNLLNLYTLDMPFSYIEH--TADEFWKMNKLRHLNFGSITLPAHPGK--YCGSLENL--- 583 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP~-si~~~L~~L~~L~L~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L--- 583 (608)
|++|++++|.+..+|. .+ +++++|++|++++|.+.. +|..++++++|++|++++|. +..+| .++.|..|
T Consensus 102 L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLL 178 (570)
T ss_dssp CCEEECTTSCCCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC--CCEECGGGGHHHHTCTTC
T ss_pred cccccccccccccCCCccc-cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc--cceecHHHccchhccchh
Confidence 9999999998888876 56 899999999999997764 78889999999999999865 34443 56666666
Q ss_pred -ceeecc
Q 039772 584 -NFISAL 589 (608)
Q Consensus 584 -~~l~~~ 589 (608)
..++++
T Consensus 179 ~~~L~l~ 185 (570)
T 2z63_A 179 NLSLDLS 185 (570)
T ss_dssp CCEEECT
T ss_pred hhhcccC
Confidence 556665
No 71
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=2.7e-11 Score=116.35 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=112.1
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~ 511 (608)
.+..++.|.+..+.+....+..+ +++|+.|.+.++... ...+..|..+++|+.|+|++|.+..+|.. +..+.+
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC----EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC----CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 34688999999988774444344 889999999999876 56678899999999999999999999876 578999
Q ss_pred ccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCC
Q 039772 512 LRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 568 (608)
|++|+|++|.+..+|+..|+.+++|++|+|++|.+..+|. .+..+++|++|++++|.
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9999999999998865433999999999999999998887 58999999999999975
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.23 E-value=9.4e-12 Score=136.49 Aligned_cols=148 Identities=19% Similarity=0.161 Sum_probs=119.8
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFLL 512 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L 512 (608)
+..++++.+..+......+..+ +++|++|.+.++... ...+..|..+++|++|++++|.+..+|+. ++.+++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 4678999999888764444444 889999999998776 56667789999999999999999877765 8999999
Q ss_pred cEEEecCCCCCc--CChHHHhcCccCcEEeccccc-cccchh-HhcccccCcEEEecCCCCCCcCCC-CCCCCcccceee
Q 039772 513 RYLKLNIPSLKS--LPSSLLSNLLNLYTLDMPFSY-IEHTAD-EFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFIS 587 (608)
Q Consensus 513 r~L~l~~~~i~~--LP~si~~~L~~L~~L~L~~~~-l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~ 587 (608)
++|++++|.+.. .|..+ +++++|++|++++|. +..+|. .++++++|++|++++|.... ..| .+++++.|+.++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEEEEEE
T ss_pred cEEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-cChhhhhccccCceEe
Confidence 999999998884 46777 999999999999995 788874 79999999999999865322 256 788777777777
Q ss_pred cc
Q 039772 588 AL 589 (608)
Q Consensus 588 ~~ 589 (608)
++
T Consensus 179 l~ 180 (549)
T 2z81_A 179 LH 180 (549)
T ss_dssp EE
T ss_pred cc
Confidence 76
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.22 E-value=1.3e-11 Score=125.66 Aligned_cols=143 Identities=13% Similarity=0.048 Sum_probs=104.4
Q ss_pred cceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-Cccc-CCCCCcc
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGI-ENLFLLR 513 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i-~~L~~Lr 513 (608)
..++.+.+..+.... .... +++|+.|.+.++... ...+..+..+++|+.|++++|.+..+ |..+ ..+++|+
T Consensus 99 ~~L~~L~l~~n~l~~--~~~~~~~~L~~L~l~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNISR--VSCSRGQGKKNIYLANNKIT----MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCSE--EEECCCSSCEEEECCSSCCC----SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccCC--cCccccCCCCEEECCCCCCC----CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 455666666655542 1222 677888888877765 45555677788888888888887754 3444 3678888
Q ss_pred EEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 514 YLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 514 ~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
+|++++|.+..+|.. ..+++|++|+|++|.+..+|..+..+++|++|++++|. +..+| .++.+..|+.++++
T Consensus 173 ~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK--LVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp EEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC--CCEECTTCCCCTTCCEEECT
T ss_pred EEECCCCcCcccccc--cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc--ccchhhHhhcCCCCCEEEcc
Confidence 888888888877653 45888888888888888888888888888888888865 55678 77778888888887
No 74
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=7.2e-12 Score=141.69 Aligned_cols=106 Identities=25% Similarity=0.234 Sum_probs=90.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
++.|+.|.+.++... .++..+..+++|+.|+|++|.+..+|..++.|.+|++|+|++|.|..+|.++ ++|.+|+
T Consensus 223 l~~L~~L~Ls~n~l~-----~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~ 296 (727)
T 4b8c_D 223 DQLWHALDLSNLQIF-----NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL-GSCFQLK 296 (727)
T ss_dssp CCCCCEEECTTSCCS-----CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG-GGGTTCS
T ss_pred CCCCcEEECCCCCCC-----CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh-cCCCCCC
Confidence 678888888888765 2333444888999999999998888988999999999999999888999888 9999999
Q ss_pred EEeccccccccchhHhcccccCcEEEecCCCC
Q 039772 538 TLDMPFSYIEHTADEFWKMNKLRHLNFGSITL 569 (608)
Q Consensus 538 ~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 569 (608)
+|+|++|.+..+|.+|++|++|++|++++|..
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 99999998889998899999999999998764
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=1.9e-11 Score=134.52 Aligned_cols=127 Identities=20% Similarity=0.131 Sum_probs=113.1
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCCh-HHHhcCcc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPS-SLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~-si~~~L~~ 535 (608)
.++++.|.+.++... ...+..|..+++|++|++++|.+..+| ..++.+++|++|++++|.+..+|+ .+ +++++
T Consensus 27 ~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~ 101 (570)
T 2z63_A 27 PFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSS 101 (570)
T ss_dssp CSSCCEEECCSCCCC----EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTT
T ss_pred cccccEEEccCCccC----ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh-cCccc
Confidence 678999999999876 456678999999999999999998775 578999999999999999998875 56 99999
Q ss_pred CcEEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 536 LYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 536 L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
|++|++++|.+..+|. .++++++|++|++++|......+| .+++|..|+.++++
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 9999999999999987 799999999999999775544589 99999999999998
No 76
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=2.9e-11 Score=132.64 Aligned_cols=84 Identities=20% Similarity=0.216 Sum_probs=45.9
Q ss_pred hccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccc--hhHhcccccCc
Q 039772 483 CGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHT--ADEFWKMNKLR 560 (608)
Q Consensus 483 ~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~l--P~~i~~L~~L~ 560 (608)
+..+++|+.|+|++|.+..+|..++.|++|++|+|++|.++.+| ++ +++++|++|+|++|.+..+ |..+++|++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 45555555555555555555555555555555555555555555 44 5555555555555555554 45555555555
Q ss_pred EEEecCCC
Q 039772 561 HLNFGSIT 568 (608)
Q Consensus 561 ~L~l~~~~ 568 (608)
+|++++|.
T Consensus 537 ~L~L~~N~ 544 (567)
T 1dce_A 537 LLNLQGNS 544 (567)
T ss_dssp EEECTTSG
T ss_pred EEEecCCc
Confidence 55555543
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=124.88 Aligned_cols=166 Identities=14% Similarity=0.049 Sum_probs=121.5
Q ss_pred CCCcceEEEEEeccccccccc----cc-c-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc---CC-
Q 039772 434 KSPKKVKRLNAVKRQEDFAYL----DY-Y-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ---YP- 503 (608)
Q Consensus 434 ~~~~~~r~l~~~~~~~~~~~~----~~-~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~---lp- 503 (608)
.....++.|.+..+......+ .. . +++|+.|.+.++... ..++..|..+++|+.|++++|.+.. +|
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP----AFSCEQVRAFPALTSLDLSDNPGLGERGLMA 189 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC----CCCTTSCCCCTTCCEEECCSCTTCHHHHHHT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc----hhhHHHhccCCCCCEEECCCCCCccchhhhH
Confidence 345677888888877653211 11 1 778999999888775 4566778889999999999998642 33
Q ss_pred -cccCCCCCccEEEecCCCCCcCChH---HHhcCccCcEEeccccccccc-hhHhccc---ccCcEEEecCCCCCCcCCC
Q 039772 504 -SGIENLFLLRYLKLNIPSLKSLPSS---LLSNLLNLYTLDMPFSYIEHT-ADEFWKM---NKLRHLNFGSITLPAHPGK 575 (608)
Q Consensus 504 -~~i~~L~~Lr~L~l~~~~i~~LP~s---i~~~L~~L~~L~L~~~~l~~l-P~~i~~L---~~L~~L~l~~~~~~~~~lP 575 (608)
..++.+++|++|++++|.++.+|.. +++.+++|++|+|++|.+..+ |..++.+ ++|++|++++|. +..+|
T Consensus 190 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~--l~~lp 267 (310)
T 4glp_A 190 ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG--LEQVP 267 (310)
T ss_dssp TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC--CCSCC
T ss_pred HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC--CCchh
Confidence 3346888999999999998877763 227889999999999988876 8777777 599999999977 55788
Q ss_pred -CCCCCcccceeecc-CCCcccchhcCCCCCCCCC
Q 039772 576 -YCGSLENLNFISAL-HPCCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 576 -~i~~L~~L~~l~~~-~~~~~~~~~l~~L~~L~~L 608 (608)
.+. .+|+.++++ +.-..++. +..+++|+.|
T Consensus 268 ~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp SCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred hhhc--CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence 775 688888888 33333344 5666776653
No 78
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=1.5e-11 Score=110.23 Aligned_cols=125 Identities=20% Similarity=0.093 Sum_probs=107.1
Q ss_pred CCcceEEEEEeccccc-ccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc-CCcccCCCC
Q 039772 435 SPKKVKRLNAVKRQED-FAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ-YPSGIENLF 510 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~-~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~i~~L~ 510 (608)
.+..++++.+..+... ...+... +++|+.|.+.++... .. ..+..+++|++|++++|.+.. +|..++.++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC----CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC----Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 3567899999988776 3444444 899999999998775 23 678899999999999999987 888888899
Q ss_pred CccEEEecCCCCCcCC--hHHHhcCccCcEEeccccccccchh----HhcccccCcEEEecC
Q 039772 511 LLRYLKLNIPSLKSLP--SSLLSNLLNLYTLDMPFSYIEHTAD----EFWKMNKLRHLNFGS 566 (608)
Q Consensus 511 ~Lr~L~l~~~~i~~LP--~si~~~L~~L~~L~L~~~~l~~lP~----~i~~L~~L~~L~l~~ 566 (608)
+|++|++++|.+..+| ..+ +.+++|++|++++|.+..+|. .++.+++|++|++++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGG-GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCCcCCChHHHHHH-hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999999876 778 999999999999999998886 799999999998763
No 79
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=4.5e-11 Score=114.80 Aligned_cols=129 Identities=16% Similarity=0.035 Sum_probs=110.1
Q ss_pred CCcceEEEEEeccccccccccc-c--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDY-Y--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLF 510 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~-~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~ 510 (608)
.+..++.|.+..+......+.. + +++|+.|.+.++... ...+..|..+++|+.|+|++|.+..+|. .+..+.
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE 105 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC----EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence 3456788999988877443322 3 899999999999876 5666689999999999999999997775 488999
Q ss_pred CccEEEecCCCCCcC-ChHHHhcCccCcEEeccccccccc-hhHhcccccCcEEEecCCC
Q 039772 511 LLRYLKLNIPSLKSL-PSSLLSNLLNLYTLDMPFSYIEHT-ADEFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 511 ~Lr~L~l~~~~i~~L-P~si~~~L~~L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~~~ 568 (608)
+|++|+|++|.+..+ |..+ +.+.+|++|+|++|.+..+ |..+..+++|++|++++|.
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSS-TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCEEECCCCcCCeECHhHc-CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 999999999999988 5556 9999999999999999988 7799999999999999975
No 80
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.19 E-value=3.2e-11 Score=137.75 Aligned_cols=148 Identities=18% Similarity=0.112 Sum_probs=105.5
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-cCCcccCCCCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-QYPSGIENLFLL 512 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~~L 512 (608)
...++.+.+..+......+..+ +++|+.|.+.++... ...+..+..+++|+.|++++|.+. .+|..++.+++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc----CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 3456777777666554444444 677777777777654 345566777777888888877776 677777777788
Q ss_pred cEEEecCCCCC-cCChHHHhcCccCcEEeccccccc-cchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 513 RYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYIE-HTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 513 r~L~l~~~~i~-~LP~si~~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
++|++++|.+. .+|..+ +++++|++|+|++|.+. .+|..++++++|++|++++|... ..+| .++++..|+.++++
T Consensus 469 ~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS-GNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp CEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-EECCGGGGGCTTCCEEECC
T ss_pred eEEEecCCcccCcCCHHH-hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc-CcCCHHHcCCCCCCEEECC
Confidence 88888877776 667777 77888888888887665 67777788888888888775532 2467 77777777777777
No 81
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=1.2e-10 Score=115.13 Aligned_cols=77 Identities=23% Similarity=0.194 Sum_probs=37.4
Q ss_pred cceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecC
Q 039772 487 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGS 566 (608)
Q Consensus 487 ~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~ 566 (608)
++|+.|++++|.+..+| .++.+++|++|++++|.++.+| .+ +.+++|++|++++|.+..+ ..+..+++|++|++++
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l-~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-ML-GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GG-GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEE
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HH-ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCC
Confidence 44555555555544443 3444555555555555555444 24 4555555555555544444 3344455555555554
Q ss_pred C
Q 039772 567 I 567 (608)
Q Consensus 567 ~ 567 (608)
|
T Consensus 182 N 182 (263)
T 1xeu_A 182 Q 182 (263)
T ss_dssp E
T ss_pred C
Confidence 3
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=2.8e-11 Score=130.67 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=78.4
Q ss_pred ccceeEeecCCCcCccC-CcccCCCCCccEEEecCCCCCc-CChHHHh-cCccCcEEeccccccccchhHhcccccCcEE
Q 039772 486 FKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKS-LPSSLLS-NLLNLYTLDMPFSYIEHTADEFWKMNKLRHL 562 (608)
Q Consensus 486 ~~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~~~~i~~-LP~si~~-~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L 562 (608)
+++|+.|++++|.+..+ |..++.+++|++|++++|.+.. .|..+ + .+++|++|+|++|.+..+|. ...+++|++|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCCccccccc-cccCCCCCEE
Confidence 45556666666665544 4466677777777777777775 44455 4 67777777777777777765 4457788888
Q ss_pred EecCCCCCCcCCC-CCCCCcccceeecc-CCCcccchhcCCCCCCCC
Q 039772 563 NFGSITLPAHPGK-YCGSLENLNFISAL-HPCCCTEDLLGRLPNLQN 607 (608)
Q Consensus 563 ~l~~~~~~~~~lP-~i~~L~~L~~l~~~-~~~~~~~~~l~~L~~L~~ 607 (608)
++++|. +..+| .++.+..|+.++++ +.-..++..++.+++|+.
T Consensus 197 ~Ls~N~--l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 197 DLSSNK--LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (487)
T ss_dssp ECCSSC--CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred ECCCCC--CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCE
Confidence 888866 55677 77778888888887 222233333667776664
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.19 E-value=6.5e-11 Score=127.15 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=92.5
Q ss_pred cceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 515 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L 515 (608)
..++.+.+..+.... .+... +++|+.|.+.++... ..+ + +..+++|+.|++++|.+..+|+ ++.+++|++|
T Consensus 46 ~~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~----~~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLT----DIT-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCC----CCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCCcc-CcchhhhcCCCEEECCCCccC----Cch-h-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 457777777665542 22222 788888888887664 232 2 7788888888888888877776 7888888888
Q ss_pred EecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 516 KLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 516 ~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
++++|.+..+|. + +++++|++|++++|.+..+|. ++++++|++|++++ + ...++.++++..|+.++++
T Consensus 118 ~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~--~~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 118 TLFNNQITDIDP-L-KNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-Q--VTDLKPLANLTTLERLDIS 185 (466)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-S--CCCCGGGTTCTTCCEEECC
T ss_pred ECCCCCCCCChH-H-cCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-c--ccCchhhccCCCCCEEECc
Confidence 888888888876 6 888888888888887777664 55666655555543 2 2222234444444444444
No 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=3.3e-11 Score=124.93 Aligned_cols=147 Identities=20% Similarity=0.102 Sum_probs=93.2
Q ss_pred CcceEEEEEecccccccccccc---cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCC
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY---DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFL 511 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~---~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~ 511 (608)
+..++.|.+..+.+........ +++|+.|.+.++... ...+..|..+++|+.|+|++|.+..+|. .+..+.+
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC----ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence 3456677777666553222221 567777777776664 3445567777777777777777776654 4667777
Q ss_pred ccEEEecCCCCCcCC-hHHHhcCccCcEEeccccccccchhHh----cccccCcEEEecCCCCCCcCCC--CCCCCcc--
Q 039772 512 LRYLKLNIPSLKSLP-SSLLSNLLNLYTLDMPFSYIEHTADEF----WKMNKLRHLNFGSITLPAHPGK--YCGSLEN-- 582 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP-~si~~~L~~L~~L~L~~~~l~~lP~~i----~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~-- 582 (608)
|++|+|++|.|..++ ..+ .++++|++|+|++|.+..+|..+ +++++|++|++++|. +..+| .+..+..
T Consensus 114 L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK--LKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC--CCCCCHHHHHHSCHHH
T ss_pred CCEEECCCCcccEECHHHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC--CCccCHHHhhhccHhh
Confidence 777777777777664 344 77777777777777777777654 567777777777765 44555 4444544
Q ss_pred cceeecc
Q 039772 583 LNFISAL 589 (608)
Q Consensus 583 L~~l~~~ 589 (608)
|+.+++.
T Consensus 191 l~~l~l~ 197 (361)
T 2xot_A 191 KNGLYLH 197 (361)
T ss_dssp HTTEECC
T ss_pred cceEEec
Confidence 2455555
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.18 E-value=2.4e-11 Score=133.24 Aligned_cols=145 Identities=19% Similarity=0.097 Sum_probs=117.8
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
.+++++|.+.++... ...+..|..+++|++|++++|.+..+| ..++.+.+|++|++++|.+..+|+..|+++++|
T Consensus 25 ~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 679999999999875 456678899999999999999998665 689999999999999999999988733999999
Q ss_pred cEEecccccccc--chhHhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeeccCC--CcccchhcCCCCCCCC
Q 039772 537 YTLDMPFSYIEH--TADEFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISALHP--CCCTEDLLGRLPNLQN 607 (608)
Q Consensus 537 ~~L~L~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~~~--~~~~~~~l~~L~~L~~ 607 (608)
++|++++|.+.. .|..++++++|++|++++|.. ...+| .++++..|+.++++.+ ...++..++.+++|+.
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET-FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS-CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCcc-ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 999999998874 577899999999999999542 34465 7888999999999822 2222222666665543
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.18 E-value=4.7e-11 Score=134.55 Aligned_cols=148 Identities=20% Similarity=0.151 Sum_probs=122.3
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~ 511 (608)
.+..+++|.+..+......+..+ +++|++|.+.++... ...+..|..+++|++|++++|.+..+|+ .++.+.+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 45789999999988765444444 899999999998776 4667788999999999999999998886 5999999
Q ss_pred ccEEEecCCCCCcCCh-HHHhcCccCcEEeccccccccc-hhHhcccccCcEEEecCCCCCCcCCC--CCC--CCcccce
Q 039772 512 LRYLKLNIPSLKSLPS-SLLSNLLNLYTLDMPFSYIEHT-ADEFWKMNKLRHLNFGSITLPAHPGK--YCG--SLENLNF 585 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP~-si~~~L~~L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP--~i~--~L~~L~~ 585 (608)
|++|++++|.+..+|+ .+ +++++|++|++++|.+..+ |..++++++|++|++++|. +..+| .++ .+..|+.
T Consensus 99 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK--IQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CSEEECCSSCCCCCCSCTT-TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC--CCCBCHHHHGGGTTCEESE
T ss_pred CCEEECCCCccCccChhHc-cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc--ccccCHHHhhccccccccE
Confidence 9999999999998875 56 9999999999999977765 4578999999999999976 44454 443 4678888
Q ss_pred eecc
Q 039772 586 ISAL 589 (608)
Q Consensus 586 l~~~ 589 (608)
++++
T Consensus 176 L~L~ 179 (680)
T 1ziw_A 176 LELS 179 (680)
T ss_dssp EECT
T ss_pred EECC
Confidence 8887
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=5.5e-11 Score=123.23 Aligned_cols=126 Identities=20% Similarity=0.078 Sum_probs=109.3
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhc-cccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCcc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICG-MFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~ 535 (608)
.+.++.|.+.++... ...+..|. .+++|+.|+|++|.+..+| ..+..+.+|++|+|++|.+..+|+..|..+.+
T Consensus 38 ~~~l~~L~Ls~N~l~----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 38 PSYTALLDLSHNNLS----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113 (361)
T ss_dssp CTTCSEEECCSSCCC----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCCCC----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence 677999999999876 45566676 9999999999999999877 56899999999999999999998865599999
Q ss_pred CcEEeccccccccc-hhHhcccccCcEEEecCCCCCCcCCC-CC----CCCcccceeecc
Q 039772 536 LYTLDMPFSYIEHT-ADEFWKMNKLRHLNFGSITLPAHPGK-YC----GSLENLNFISAL 589 (608)
Q Consensus 536 L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP-~i----~~L~~L~~l~~~ 589 (608)
|++|+|++|.+..+ |..+.++++|++|++++|. +..+| .+ +.+..|+.|+++
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ--ISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCSCCGGGTC----CTTCCEEECC
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCc--CCeeCHHHhcCcccCCcCCEEECC
Confidence 99999999998887 5689999999999999977 67788 54 569999999998
No 88
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=7.4e-11 Score=110.78 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=62.5
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
.++++.|.+.++... .++..|..+++|+.|+|++|.+..+| ..+..+.+|++|+|++|.+..+|+..|+.+++|
T Consensus 30 ~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp CTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 456666666665553 22245566666666666666666554 345666666666666666666554322666666
Q ss_pred cEEeccccccccchh-HhcccccCcEEEecCC
Q 039772 537 YTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSI 567 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~ 567 (608)
++|+|++|.+..+|. .+..+++|++|++++|
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 666666666666655 3556666666666664
No 89
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=3.8e-11 Score=131.72 Aligned_cols=97 Identities=23% Similarity=0.226 Sum_probs=91.5
Q ss_pred ceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCC
Q 039772 488 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSI 567 (608)
Q Consensus 488 ~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~ 567 (608)
.|+.|+|++|.+..+|. ++.|++|++|+|++|.+..+|.++ +++++|++|+|++|.+..+| ++++|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 58999999999999997 999999999999999999999999 99999999999999999999 8999999999999998
Q ss_pred CCCCcCC--C-CCCCCcccceeecc
Q 039772 568 TLPAHPG--K-YCGSLENLNFISAL 589 (608)
Q Consensus 568 ~~~~~~l--P-~i~~L~~L~~l~~~ 589 (608)
. +..+ | .++.|..|+.|+++
T Consensus 519 ~--l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 519 R--LQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp C--CCSSSTTGGGGGCTTCCEEECT
T ss_pred C--CCCCCCcHHHhcCCCCCEEEec
Confidence 7 4455 8 99999999999998
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.16 E-value=1.1e-10 Score=128.74 Aligned_cols=156 Identities=16% Similarity=0.087 Sum_probs=106.7
Q ss_pred ceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEE
Q 039772 438 KVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 515 (608)
Q Consensus 438 ~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L 515 (608)
.++.|.+..+... .++.+ +++|+.|.+.++... ...+ +..+++|+.|+|++|.+..+| .++.|++|++|
T Consensus 44 ~L~~L~l~~n~i~--~l~~l~~l~~L~~L~Ls~N~l~----~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 44 SIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNKLT----DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp TCCCCBCTTCCCC--CCTTGGGCTTCCEEECTTSCCC----CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred CCCEEECcCCCCC--CChHHccCCCCCEEEeeCCCCC----CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 3444555554443 22223 778888888877664 2322 777888888888888877765 67778888888
Q ss_pred EecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc-CCCcc
Q 039772 516 KLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL-HPCCC 594 (608)
Q Consensus 516 ~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~-~~~~~ 594 (608)
+|++|.+..+|. + +.|++|+.|+|++|.+..+ ..++.|++|++|++++|. +..+|.++.|..|+.|+++ +....
T Consensus 115 ~Ls~N~l~~l~~-l-~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~--l~~~~~l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 115 SLEHNGISDING-L-VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp ECTTSCCCCCGG-G-GGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC--CCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred EecCCCCCCCcc-c-cCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc--CCCchhhccCCCCCEEECcCCCCCC
Confidence 888888877754 6 7888888888888877777 457788888888888765 4444446667778888877 33334
Q ss_pred cchhcCCCCCCCCC
Q 039772 595 TEDLLGRLPNLQNL 608 (608)
Q Consensus 595 ~~~~l~~L~~L~~L 608 (608)
++. +..|++|+.|
T Consensus 190 l~~-l~~l~~L~~L 202 (605)
T 1m9s_A 190 LRA-LAGLKNLDVL 202 (605)
T ss_dssp CGG-GTTCTTCSEE
T ss_pred ChH-HccCCCCCEE
Confidence 555 7777777653
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.16 E-value=2.5e-10 Score=117.43 Aligned_cols=159 Identities=19% Similarity=0.128 Sum_probs=104.3
Q ss_pred cceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 515 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L 515 (608)
..++.+.+..+....... .. +++|+.|.+.++... ... . +..+++|+.|++++|.+...+. +..+++|++|
T Consensus 155 ~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~----~~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L 226 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE----DIS-P-LASLTSLHYFTAYVNQITDITP-VANMTRLNSL 226 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC----CCG-G-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred CCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc----ccc-c-ccCCCccceeecccCCCCCCch-hhcCCcCCEE
Confidence 455566665555442111 11 666777777666553 122 1 6667777777777777666555 6777888888
Q ss_pred EecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeeccCC--Cc
Q 039772 516 KLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP--CC 593 (608)
Q Consensus 516 ~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~~~--~~ 593 (608)
++++|.+..+|. + +.+++|++|++++|.+..+| .+..+++|++|++++|. +..+|.++.+..|+.++++++ ..
T Consensus 227 ~l~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 227 KIGNNKITDLSP-L-ANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ--ISDISVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC--CCCCGGGGGCTTCSEEECCSSCCCG
T ss_pred EccCCccCCCcc-h-hcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCc--cCCChhhcCCCCCCEEECcCCcCCC
Confidence 888888887777 6 78888888888888777775 47788888888888854 454566666788888888732 11
Q ss_pred ccchhcCCCCCCCCC
Q 039772 594 CTEDLLGRLPNLQNL 608 (608)
Q Consensus 594 ~~~~~l~~L~~L~~L 608 (608)
..+..++.+++|+.|
T Consensus 302 ~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTL 316 (347)
T ss_dssp GGHHHHHTCTTCSEE
T ss_pred cChhHhhccccCCEE
Confidence 222226677777653
No 92
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.16 E-value=3.3e-11 Score=134.21 Aligned_cols=143 Identities=17% Similarity=0.097 Sum_probs=119.4
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~ 511 (608)
.|..+++|.+..+.+....+..+ +++|++|.+.++... .+.+..|..+++|++|+|++|.++.+|. .+..|.+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 46789999999998875444445 899999999999876 5667789999999999999999999885 5799999
Q ss_pred ccEEEecCCCCCcCChHHHhcCccCcEEeccccccc--cchhHhcccccCcEEEecCCCCCCcCCC--CCCCCccc
Q 039772 512 LRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIE--HTADEFWKMNKLRHLNFGSITLPAHPGK--YCGSLENL 583 (608)
Q Consensus 512 Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L 583 (608)
|++|++++|.+..+|+..|+++++|++|+|++|.+. .+|..+++|++|++|++++|. +..++ .+..|+.+
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQM 199 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTC
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc--ccccccccccchhhh
Confidence 999999999999998753399999999999999776 468899999999999999976 44443 55544433
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.15 E-value=2.7e-10 Score=122.28 Aligned_cols=156 Identities=21% Similarity=0.196 Sum_probs=90.7
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 514 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~ 514 (608)
..++.+.+..+.... .+.. +++|+.|.+.++... ...+ +..+++|+.|++++|.+..+|. +..+++|++
T Consensus 221 ~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS----NLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTN 291 (466)
T ss_dssp TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC----CCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred CCCCEEECCCCCccc--chhhhcCCCCCEEECCCCccc----cchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCe
Confidence 345566665554441 1222 666666666666553 1221 5666667777777666666555 666666777
Q ss_pred EEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc-CCCc
Q 039772 515 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL-HPCC 593 (608)
Q Consensus 515 L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~-~~~~ 593 (608)
|++++|.+..+|+ + +.+++|+.|++++|.+..++. ++.+++|+.|++++|. +..+|.++++..|+.++++ +...
T Consensus 292 L~L~~n~l~~~~~-~-~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 292 LELNENQLEDISP-I-SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK--VSDVSSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp EECCSSCCSCCGG-G-GGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC--CCCCGGGTTCTTCCEEECCSSCCC
T ss_pred EEcCCCcccCchh-h-cCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc--cCCchhhccCCCCCEEeCCCCccC
Confidence 7777666666665 5 666677777777766665554 6666677777776643 3334455566666666666 2222
Q ss_pred ccchhcCCCCCCCC
Q 039772 594 CTEDLLGRLPNLQN 607 (608)
Q Consensus 594 ~~~~~l~~L~~L~~ 607 (608)
.... +..+++|+.
T Consensus 367 ~~~~-~~~l~~L~~ 379 (466)
T 1o6v_A 367 DLTP-LANLTRITQ 379 (466)
T ss_dssp BCGG-GTTCTTCCE
T ss_pred ccch-hhcCCCCCE
Confidence 2223 455555543
No 94
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=5.8e-11 Score=109.69 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=107.8
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCccc-CCCCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGI-ENLFLL 512 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i-~~L~~L 512 (608)
+..++.+.+..+.... .+... .++|+.|.+.++... .. ..+..+++|+.|++++|.+..+|+.+ +.+++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~----~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR----KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC----EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCC----cc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 5678999998887763 22222 459999999999875 33 67889999999999999999998766 899999
Q ss_pred cEEEecCCCCCcCCh--HHHhcCccCcEEeccccccccchhH----hcccccCcEEEecCCC
Q 039772 513 RYLKLNIPSLKSLPS--SLLSNLLNLYTLDMPFSYIEHTADE----FWKMNKLRHLNFGSIT 568 (608)
Q Consensus 513 r~L~l~~~~i~~LP~--si~~~L~~L~~L~L~~~~l~~lP~~----i~~L~~L~~L~l~~~~ 568 (608)
++|++++|.+..+|. .+ +.+++|++|++++|.+..+|.. ++.+++|++|++++|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999999999998 78 9999999999999999999986 9999999999999854
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.13 E-value=1.5e-10 Score=118.46 Aligned_cols=142 Identities=14% Similarity=0.099 Sum_probs=110.3
Q ss_pred ceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCCccEEE
Q 039772 438 KVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLK 516 (608)
Q Consensus 438 ~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~ 516 (608)
..+.+.+..+... .++....++++.|.+.++... ...+..|..+++|+.|++++|.+..+ |..++.+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCCCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 3556666555444 133333789999999998875 45667899999999999999999866 78899999999999
Q ss_pred ecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCCCCCc-CCC-CCCCCcccceeec
Q 039772 517 LNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAH-PGK-YCGSLENLNFISA 588 (608)
Q Consensus 517 l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~-~lP-~i~~L~~L~~l~~ 588 (608)
+++|.+..+|..+ . .+|++|++++|.+..+|. .++++++|++|++++|..... ..| .++.+ .|+.+++
T Consensus 109 L~~n~l~~l~~~~-~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 109 ISKNHLVEIPPNL-P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CCSSCCCSCCSSC-C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CCCCcCCccCccc-c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 9999999999987 5 899999999999999887 589999999999999764211 234 55544 4444433
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.13 E-value=3.7e-11 Score=122.97 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=127.3
Q ss_pred CCcceEEEEEeccccccc-ccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCC-cCc--cCCcccCC
Q 039772 435 SPKKVKRLNAVKRQEDFA-YLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSL-VLI--QYPSGIEN 508 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~-~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~-~l~--~lp~~i~~ 508 (608)
....++++.+..+..... .+... +++|++|.+.++... ...+..+..+++|+.|++++| .+. .+|..+..
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~----~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC----HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC----HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 347788999888765533 33333 889999999988654 456677888999999999999 576 47777888
Q ss_pred CCCccEEEecCC-CCCc--CChHHHhcCc-cCcEEecccccc----ccchhHhcccccCcEEEecCCCCCCcCCC-CCCC
Q 039772 509 LFLLRYLKLNIP-SLKS--LPSSLLSNLL-NLYTLDMPFSYI----EHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGS 579 (608)
Q Consensus 509 L~~Lr~L~l~~~-~i~~--LP~si~~~L~-~L~~L~L~~~~l----~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~ 579 (608)
+++|++|++++| .+.. +|..+ +.++ +|++|++++|.+ ..+|..++++++|++|++++|..-....| .+++
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~-~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAV-AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHH-HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred CCCCCEEcCCCCCCcChHHHHHHH-HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 999999999999 8874 77777 9999 999999999944 57888888999999999999541112345 8888
Q ss_pred CcccceeeccCCCcc----cchhcCCCCCCCCC
Q 039772 580 LENLNFISALHPCCC----TEDLLGRLPNLQNL 608 (608)
Q Consensus 580 L~~L~~l~~~~~~~~----~~~~l~~L~~L~~L 608 (608)
+.+|+.++++.+... +.. ++++++|+.|
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L 277 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTL 277 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEE
T ss_pred CCCCCEeeCCCCCCCCHHHHHH-HhcCCCCCEE
Confidence 899999999833222 224 6667777654
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.12 E-value=3e-11 Score=122.85 Aligned_cols=148 Identities=9% Similarity=-0.013 Sum_probs=122.8
Q ss_pred CcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHh-hccccceeEeecCCCcCccCCcccCCCCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKI-CGMFKLLRVLDLGSLVLIQYPSGIENLFLL 512 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~-~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L 512 (608)
...++.+.+..+......+... +++|+.|.+.++... ...+.. +..+++|+.|++++|.+..+|.. ..+++|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L 193 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID----TVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKL 193 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC----EEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTC
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC----cccHHHHhhccCcCCEEECCCCcCcccccc-cccccC
Confidence 4568999999888774444344 899999999998876 344444 45789999999999999988654 459999
Q ss_pred cEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 513 RYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 513 r~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
++|++++|.+..+|+.+ +.+++|++|++++|.+..+|..+..+++|++|++++|......+| .++.+..|+.+++.
T Consensus 194 ~~L~Ls~N~l~~l~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 194 KTLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CEEECCSSCCCEECGGG-GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CEEECCCCcCCcchhhh-cccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 99999999999999998 999999999999999999999999999999999999774423567 77777777777765
No 98
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=126.16 Aligned_cols=146 Identities=16% Similarity=0.097 Sum_probs=109.9
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCc--chHHhhccccceeEeecCCCcCcc-CCcc-cCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPM--DWEKICGMFKLLRVLDLGSLVLIQ-YPSG-IEN 508 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~--~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~-i~~ 508 (608)
....++.+.+..+......+... +++|+.|.+.++... . ..+..+..+++|+.|++++|.+.. +|.. +..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK----ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC----BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC----ccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 34567778877777664444444 778888888877764 2 234567888888888888888876 7754 677
Q ss_pred CCCccEEEecCCCCC-cCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-C-CCCCcccce
Q 039772 509 LFLLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-Y-CGSLENLNF 585 (608)
Q Consensus 509 L~~Lr~L~l~~~~i~-~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~-i~~L~~L~~ 585 (608)
+++|++|++++|.+. .+|..+ . ++|++|++++|.+..+|..+..+++|++|++++|. +..+| . +..+..|+.
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l-~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCL-P--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ--LKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSC-C--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC--CCCCCTTTTTTCTTCCE
T ss_pred CccCCEEECcCCCCCcchhhhh-c--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc--CCccCHHHhccCCcccE
Confidence 788888888888775 555544 3 68888888888888888888888899999998876 55688 5 777888888
Q ss_pred eecc
Q 039772 586 ISAL 589 (608)
Q Consensus 586 l~~~ 589 (608)
++++
T Consensus 473 L~l~ 476 (520)
T 2z7x_B 473 IWLH 476 (520)
T ss_dssp EECC
T ss_pred EECc
Confidence 8887
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=133.86 Aligned_cols=150 Identities=24% Similarity=0.215 Sum_probs=119.6
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~ 511 (608)
.+..+++|.+..+.+....+..+ +++|++|.+.++.... .+.+..|..+++|++|+|++|.+..+ |..++.+.+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~---~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL---TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC---EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc---ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 67889999999988875555555 8999999999985431 34467889999999999999998855 889999999
Q ss_pred ccEEEecCCCCCc-CChH--HHhcCccCcEEeccccccccc--hhHhcccccCcEEEecCCCCCCcCCC-CCCCC--ccc
Q 039772 512 LRYLKLNIPSLKS-LPSS--LLSNLLNLYTLDMPFSYIEHT--ADEFWKMNKLRHLNFGSITLPAHPGK-YCGSL--ENL 583 (608)
Q Consensus 512 Lr~L~l~~~~i~~-LP~s--i~~~L~~L~~L~L~~~~l~~l--P~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L--~~L 583 (608)
|++|+|++|.+.. +|+. + +++++|++|+|++|.+..+ |..+++|++|++|++++|..... .| .++.+ .+|
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L 176 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYF-RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTL 176 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCC-SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHCSS
T ss_pred cCEeeCcCCCCCcccccCccc-cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCCcc
Confidence 9999999999875 5665 7 9999999999999987765 35799999999999999764322 34 66555 566
Q ss_pred ceeecc
Q 039772 584 NFISAL 589 (608)
Q Consensus 584 ~~l~~~ 589 (608)
+.++++
T Consensus 177 ~~L~L~ 182 (844)
T 3j0a_A 177 SFFSLA 182 (844)
T ss_dssp CCCEEC
T ss_pred ceEECC
Confidence 666665
No 100
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.11 E-value=6.7e-11 Score=136.56 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=111.9
Q ss_pred ccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCc-CccC-CcccCCCCCccEEEecCCCCCcC-ChHH
Q 039772 453 YLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLV-LIQY-PSGIENLFLLRYLKLNIPSLKSL-PSSL 529 (608)
Q Consensus 453 ~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~l-p~~i~~L~~Lr~L~l~~~~i~~L-P~si 529 (608)
+|. ..++++.|.+.++... ...+..|..+++|++|+|++|. +..+ |..++++++|++|+|++|.+..+ |..+
T Consensus 19 vP~-lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 19 VPQ-VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp CCS-SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCC-CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 444 5789999999999876 5667789999999999999995 4466 78899999999999999999977 6677
Q ss_pred HhcCccCcEEecccccccc-chhH--hcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 530 LSNLLNLYTLDMPFSYIEH-TADE--FWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 530 ~~~L~~L~~L~L~~~~l~~-lP~~--i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
+++++|++|+|++|.+.. +|.. +++|++|++|++++|.......| .+++|.+|+.++++
T Consensus 94 -~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 94 -QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp -CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred -cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 999999999999998775 6665 99999999999999875444345 78999999999998
No 101
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.11 E-value=2e-10 Score=121.16 Aligned_cols=140 Identities=11% Similarity=0.090 Sum_probs=94.5
Q ss_pred CCCCCceechhhHHHHHHHH-hcC--C--CCceEEEE--EcCCCcchHHHHHHHhcCccccce-----ee-eeeeEeccc
Q 039772 123 SKSRDTVGLDDRMEELLDLL-IEG--P--PQLSVVAI--LDSIGLDKTAFATEAYNSSYVKHY-----FD-CHAWIPDIS 189 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~~~-----F~-~~~wv~vs~ 189 (608)
..+..++||+.+++++.++| ... . ...+.+.| +|++|+||||||+++++ ..... |+ .++|+....
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGG
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCC
Confidence 34578999999999999998 421 1 22455666 99999999999999998 44432 22 256777644
Q ss_pred c--hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC--CCcEEEEEcCCCCH--------hHHHHHhhhcCCC--
Q 039772 190 Y--ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIEDVWTI--------GVWDVIREILPDN-- 255 (608)
Q Consensus 190 ~--~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~--------~~~~~l~~~~~~~-- 255 (608)
. ...++..++.+++...+ ....+.......+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CCCHHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 4 88889999999875432 123345666777777775 68999999999764 2333333332211
Q ss_pred -C--CCcEEEEEccC
Q 039772 256 -H--NRSRVLITLTQ 267 (608)
Q Consensus 256 -~--~gs~IivTTR~ 267 (608)
+ ....||+||+.
T Consensus 174 ~~~~~~v~lI~~~~~ 188 (412)
T 1w5s_A 174 RDGVNRIGFLLVASD 188 (412)
T ss_dssp TTSCCBEEEEEEEEE
T ss_pred CCCCceEEEEEEecc
Confidence 2 34558888876
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.11 E-value=1.8e-10 Score=116.62 Aligned_cols=149 Identities=12% Similarity=-0.031 Sum_probs=115.4
Q ss_pred ceEEEEEeccccccccccc---c-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC-cccCCCCCc
Q 039772 438 KVKRLNAVKRQEDFAYLDY---Y-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP-SGIENLFLL 512 (608)
Q Consensus 438 ~~r~l~~~~~~~~~~~~~~---~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L 512 (608)
.++++.+..+......+.. . +++|++|.+.++.............+..+++|+.|++++|.+..+| ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 4788888888766444443 3 7899999999988753210122244568999999999999998665 688899999
Q ss_pred cEEEecCCCCCc---CCh--HHHhcCccCcEEeccccccccchhH----hcccccCcEEEecCCCCCCcCC-C-CCCCC-
Q 039772 513 RYLKLNIPSLKS---LPS--SLLSNLLNLYTLDMPFSYIEHTADE----FWKMNKLRHLNFGSITLPAHPG-K-YCGSL- 580 (608)
Q Consensus 513 r~L~l~~~~i~~---LP~--si~~~L~~L~~L~L~~~~l~~lP~~----i~~L~~L~~L~l~~~~~~~~~l-P-~i~~L- 580 (608)
++|++++|.+.. +|. .+ +++++|++|+|++|.+..+|.. ++++++|++|++++|. +..+ | .++.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~ 248 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCP-HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS--LRATVNPSAPRCM 248 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCT-TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC--CCCCCCSCCSSCC
T ss_pred CEEECCCCCCccchhhhHHHhh-hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC--CCccchhhHHhcc
Confidence 999999998753 433 23 6899999999999999887763 5788999999999987 4444 7 77775
Q ss_pred --cccceeecc
Q 039772 581 --ENLNFISAL 589 (608)
Q Consensus 581 --~~L~~l~~~ 589 (608)
.+|+.++++
T Consensus 249 ~~~~L~~L~Ls 259 (310)
T 4glp_A 249 WSSALNSLNLS 259 (310)
T ss_dssp CCTTCCCEECC
T ss_pred CcCcCCEEECC
Confidence 699999998
No 103
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.11 E-value=2.4e-10 Score=122.11 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=60.9
Q ss_pred hHHhhccccceeEeecCCCcCccC-CcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccc-hhHhccc
Q 039772 479 WEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHT-ADEFWKM 556 (608)
Q Consensus 479 ~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~l-P~~i~~L 556 (608)
.+..+..+++|+.|++++|.+..+ |..++.+++|++|++++|.+..+++..|+.+++|++|+|++|.+..+ |..++.+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 344455556666666666665543 34555666666666666666555332225666666666666655544 4456666
Q ss_pred ccCcEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 557 NKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 557 ~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
++|++|++++|. +..+| .++.+..|+.++++
T Consensus 371 ~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 371 PNLKELALDTNQ--LKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp TTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECC
T ss_pred ccccEEECCCCc--cccCCHhHhccCCcccEEEcc
Confidence 666666666644 34444 23456666666665
No 104
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.11 E-value=1.9e-10 Score=122.83 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=117.1
Q ss_pred cceEEEEEecccccccccccc-----cccceEEeecCCCCCCCCC------cchHHhhc--cccceeEeecCCCcCcc-C
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY-----DSQLHSLLCCSPESRHFDP------MDWEKICG--MFKLLRVLDLGSLVLIQ-Y 502 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~-----~~~LrsL~l~~~~~~~~~~------~~~~~~~~--~~~~Lr~L~L~~~~l~~-l 502 (608)
..++.+.+..+......+... .++++.|.+.++....... ......+. ..++|+.|++++|.+.. .
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 457777777766543333322 3677777777664321100 01111222 23689999999999874 5
Q ss_pred CcccCCCCCccEEEecCCCCCcCC-hHHHhcCccCcEEeccccccccc-hhHhcccccCcEEEecCCCCCCcCC-C-CCC
Q 039772 503 PSGIENLFLLRYLKLNIPSLKSLP-SSLLSNLLNLYTLDMPFSYIEHT-ADEFWKMNKLRHLNFGSITLPAHPG-K-YCG 578 (608)
Q Consensus 503 p~~i~~L~~Lr~L~l~~~~i~~LP-~si~~~L~~L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~l-P-~i~ 578 (608)
|..++.+++|++|++++|.+..+| ..+ +++++|++|+|++|.+..+ |..++++++|++|++++|. +..+ | .++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~ 368 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAF-WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH--IRALGDQSFL 368 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC--CCEECTTTTT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHh-cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc--ccccChhhcc
Confidence 677889999999999999998774 466 8999999999999988877 5678999999999999976 4444 6 888
Q ss_pred CCcccceeeccCC--CcccchhcCCCCCCCCC
Q 039772 579 SLENLNFISALHP--CCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 579 ~L~~L~~l~~~~~--~~~~~~~l~~L~~L~~L 608 (608)
.+..|+.++++++ ...++..++.+++|+.|
T Consensus 369 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ccccccEEECCCCccccCCHhHhccCCcccEE
Confidence 8999999999832 22333325677777653
No 105
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.11 E-value=8.1e-11 Score=130.66 Aligned_cols=147 Identities=18% Similarity=0.037 Sum_probs=105.0
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFL 511 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~ 511 (608)
.+..+++|.+..+......+..+ +++|++|.+.++... ...+..|..+++|+.|++++|.+..+ |..++.+++
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY----WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc----eeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 45677888888877764444444 778888888887665 45566778888888888888887644 667788888
Q ss_pred ccEEEecCCCCCcC-ChHHHhcCccCcEEeccccccccc--hhHhcccccCcEEEecCCCCCCcCC-C-CCCCCcccc--
Q 039772 512 LRYLKLNIPSLKSL-PSSLLSNLLNLYTLDMPFSYIEHT--ADEFWKMNKLRHLNFGSITLPAHPG-K-YCGSLENLN-- 584 (608)
Q Consensus 512 Lr~L~l~~~~i~~L-P~si~~~L~~L~~L~L~~~~l~~l--P~~i~~L~~L~~L~l~~~~~~~~~l-P-~i~~L~~L~-- 584 (608)
|++|++++|.+..+ |..+ +++++|++|++++|.+..+ |. +..+++|++|++++|. +..+ | .++.+..|+
T Consensus 107 L~~L~L~~n~i~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPL-HNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNA--IHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp CCEEECTTSCCSCGGGSCC-TTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSC--CCEECHHHHHTTTTCCSE
T ss_pred ccEeeccccCcccCCcchh-ccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCc--ccccChhhhhhhccccee
Confidence 88888888888877 4455 8888888888888877765 44 4448888888888865 4444 3 566666666
Q ss_pred eeecc
Q 039772 585 FISAL 589 (608)
Q Consensus 585 ~l~~~ 589 (608)
.++++
T Consensus 183 ~L~l~ 187 (606)
T 3t6q_A 183 SLNLN 187 (606)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 55555
No 106
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.11 E-value=1.9e-10 Score=127.73 Aligned_cols=149 Identities=14% Similarity=0.015 Sum_probs=119.9
Q ss_pred ccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCCccEEEecCCCCCcC-ChHHH
Q 039772 453 YLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSL-PSSLL 530 (608)
Q Consensus 453 ~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~~~~i~~L-P~si~ 530 (608)
+|....+.++.|.+.++... ...+..|..+++|++|++++|.+..+ |..++.+.+|++|++++|.+..+ |..+
T Consensus 27 iP~~l~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~- 101 (606)
T 3t6q_A 27 IPGTLPNSTECLEFSFNVLP----TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL- 101 (606)
T ss_dssp CCTTSCTTCCEEECTTCCCS----EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT-
T ss_pred CcCCCCCcCcEEEccCCccC----cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh-
Confidence 33333678999999999886 56677899999999999999998755 78899999999999999999876 5667
Q ss_pred hcCccCcEEeccccccccc-hhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeeccCC--CcccchhcCCCCCCC
Q 039772 531 SNLLNLYTLDMPFSYIEHT-ADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP--CCCTEDLLGRLPNLQ 606 (608)
Q Consensus 531 ~~L~~L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~~~--~~~~~~~l~~L~~L~ 606 (608)
+++++|++|++++|.+..+ |..++++++|++|++++|......+|.+..+..|+.++++++ ....+..++.+++|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 9999999999999999988 568999999999999997744434464444999999999832 222232266777666
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.11 E-value=2.2e-11 Score=124.65 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=129.1
Q ss_pred ceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcc-hHHhhccccceeEeecCCCcCc-cCCcccCCCCCccE
Q 039772 438 KVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMD-WEKICGMFKLLRVLDLGSLVLI-QYPSGIENLFLLRY 514 (608)
Q Consensus 438 ~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~-~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~~Lr~ 514 (608)
.++.+.+..+......+... +++|+.|.+.++... .. .+..+..+++|+.|++++|.+. ..|..++.+++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~----~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE----VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC----HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcC----HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 45556665555443333333 899999999998753 23 6778899999999999999987 67888999999999
Q ss_pred EEecCC-CCC--cCChHHHhcCccCcEEecccc-cccc--chhHhcccc-cCcEEEecCCCCCC--cCCC-CCCCCcccc
Q 039772 515 LKLNIP-SLK--SLPSSLLSNLLNLYTLDMPFS-YIEH--TADEFWKMN-KLRHLNFGSITLPA--HPGK-YCGSLENLN 584 (608)
Q Consensus 515 L~l~~~-~i~--~LP~si~~~L~~L~~L~L~~~-~l~~--lP~~i~~L~-~L~~L~l~~~~~~~--~~lP-~i~~L~~L~ 584 (608)
|++++| .+. .+|..+ +++++|++|++++| .+.. +|..+++++ +|++|++++|...+ ..+| .++++.+|+
T Consensus 147 L~L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp EECTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred EECCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 999999 787 478878 99999999999999 8885 788899999 99999999953122 4467 667799999
Q ss_pred eeeccCC----CcccchhcCCCCCCCCC
Q 039772 585 FISALHP----CCCTEDLLGRLPNLQNL 608 (608)
Q Consensus 585 ~l~~~~~----~~~~~~~l~~L~~L~~L 608 (608)
.++++.+ ...++. ++.+++|+.|
T Consensus 226 ~L~l~~~~~l~~~~~~~-l~~l~~L~~L 252 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQE-FFQLNYLQHL 252 (336)
T ss_dssp EEECTTCTTCCGGGGGG-GGGCTTCCEE
T ss_pred EEeCCCCCcCCHHHHHH-HhCCCCCCEe
Confidence 9999832 234555 7888888764
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=2.1e-10 Score=105.99 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=75.7
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc-cCCCCCccEEEecCCCCCcCChHHHhcCccC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 536 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L 536 (608)
.++++.|.+.++... ..++..|..+++|++|++++|.+..+|.. ++.+.+|++|++++|.+..+|+..|+++++|
T Consensus 27 ~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102 (177)
T ss_dssp CTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence 567777777776654 34445567777777777777777766644 4677777777777777777776543677777
Q ss_pred cEEeccccccccchhH-hcccccCcEEEecCCC
Q 039772 537 YTLDMPFSYIEHTADE-FWKMNKLRHLNFGSIT 568 (608)
Q Consensus 537 ~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 568 (608)
++|++++|.+..+|.. +.++++|++|++++|.
T Consensus 103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 7777777777777765 3667777777777754
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=2e-10 Score=107.64 Aligned_cols=124 Identities=20% Similarity=0.193 Sum_probs=91.1
Q ss_pred EEEEecccccccccccccccceEEeecCCCCCCCCCcchHH-hhccccceeEeecCCCcCccC-CcccCCCCCccEEEec
Q 039772 441 RLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEK-ICGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLN 518 (608)
Q Consensus 441 ~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~-~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~ 518 (608)
.+.+..+... .++....++++.|.+.++... ...+. .|..+++|+.|+|++|.+..+ |..++.+.+|++|+|+
T Consensus 12 ~l~~s~~~l~-~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPLHTTELLLNDNELG----RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp EEECTTSCCS-SCCSCCCTTCSEEECCSCCCC----SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCcC-cCccCCCCCCCEEECCCCcCC----ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4444444432 133333568888888888765 23332 478888888999988888866 6778888888999998
Q ss_pred CCCCCcCChHHHhcCccCcEEeccccccccc-hhHhcccccCcEEEecCCCC
Q 039772 519 IPSLKSLPSSLLSNLLNLYTLDMPFSYIEHT-ADEFWKMNKLRHLNFGSITL 569 (608)
Q Consensus 519 ~~~i~~LP~si~~~L~~L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~~~~ 569 (608)
+|.+..+|+..|+.+++|++|+|++|.+..+ |..++.+++|++|++++|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 8888877765338888889999988877765 66788888888888888653
No 110
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.09 E-value=5.1e-10 Score=121.78 Aligned_cols=164 Identities=16% Similarity=0.067 Sum_probs=125.1
Q ss_pred cceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc---cCCcccCCCCCcc
Q 039772 437 KKVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI---QYPSGIENLFLLR 513 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~---~lp~~i~~L~~Lr 513 (608)
..++.+.+..+..........+++|++|.+.++... ...+..+..+++|+.|++++|.+. .+|..++.+++|+
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~ 377 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT----DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC----TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCccC----hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCC
Confidence 357788888876652221122889999999998876 445677889999999999999987 4567889999999
Q ss_pred EEEecCCCCCc-CChHHHhcCccCcEEecccccc-ccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc-
Q 039772 514 YLKLNIPSLKS-LPSSLLSNLLNLYTLDMPFSYI-EHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL- 589 (608)
Q Consensus 514 ~L~l~~~~i~~-LP~si~~~L~~L~~L~L~~~~l-~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~- 589 (608)
+|++++|.+.. +|...|..+++|++|++++|.+ ..+|..+. ++|++|++++|. +..+| .+..+..|+.++++
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~--l~~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK--IKSIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC--CCCCCGGGGGCTTCCEEECCS
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc--ccccchhhhcCCCCCEEECCC
Confidence 99999999987 9986438889999999999976 46666554 789999999976 55799 88899999999998
Q ss_pred CCCcccchh-cCCCCCCCCC
Q 039772 590 HPCCCTEDL-LGRLPNLQNL 608 (608)
Q Consensus 590 ~~~~~~~~~-l~~L~~L~~L 608 (608)
+.-..++.+ +..+++|+.|
T Consensus 454 N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 454 NQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp SCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCccCHHHhccCCcccEE
Confidence 222233332 5667777643
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=6.5e-12 Score=118.54 Aligned_cols=104 Identities=16% Similarity=0.106 Sum_probs=61.0
Q ss_pred HhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCc
Q 039772 481 KICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLR 560 (608)
Q Consensus 481 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~ 560 (608)
..+..+++|+.|++++|.+..+| .++.+++|++|++++|.+..+|..+ +.+++|++|++++|.+..+| .++++++|+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 35556666666666666665555 5566666666666666666666655 55566666666666665555 456666666
Q ss_pred EEEecCCCCCCcCCC---CCCCCcccceeecc
Q 039772 561 HLNFGSITLPAHPGK---YCGSLENLNFISAL 589 (608)
Q Consensus 561 ~L~l~~~~~~~~~lP---~i~~L~~L~~l~~~ 589 (608)
+|++++|. +..+| .++.+.+|+.++++
T Consensus 119 ~L~l~~N~--i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 119 VLYMSNNK--ITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp EEEESEEE--CCCHHHHHHHTTTTTCSEEEEC
T ss_pred EEECCCCc--CCchhHHHHHhcCCCCCEEEec
Confidence 66666644 22222 34455566666655
No 112
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.07 E-value=5.3e-10 Score=123.01 Aligned_cols=148 Identities=18% Similarity=0.105 Sum_probs=99.3
Q ss_pred CCcceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc-CCcc-cCCCC
Q 039772 435 SPKKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ-YPSG-IENLF 510 (608)
Q Consensus 435 ~~~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~-i~~L~ 510 (608)
....++++.+..+......+... +++|+.|.+.++..... ...+..+..+++|+.|++++|.+.. +|.. +..+.
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 34566777777666654344444 67777777777665410 0223456777777777777777765 6643 56677
Q ss_pred CccEEEecCCCCC-cCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC-C-CCCCcccceee
Q 039772 511 LLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK-Y-CGSLENLNFIS 587 (608)
Q Consensus 511 ~Lr~L~l~~~~i~-~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~-i~~L~~L~~l~ 587 (608)
+|++|++++|.+. .+|..+ . ++|++|++++|.+..+|..+.++++|++|++++|. +..+| . ++.+..|+.++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l-~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCL-P--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ--LKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSC-C--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC--CCCCCTTSTTTCTTCCCEE
T ss_pred cCCEEECCCCCCCcchhhhh-c--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC--CCCCCHHHHhcCCCCCEEE
Confidence 7777777777765 344433 2 57888888888777888877788888888888866 55677 5 77777888777
Q ss_pred cc
Q 039772 588 AL 589 (608)
Q Consensus 588 ~~ 589 (608)
++
T Consensus 504 l~ 505 (562)
T 3a79_B 504 LH 505 (562)
T ss_dssp CC
T ss_pred ec
Confidence 77
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.07 E-value=4.7e-10 Score=119.95 Aligned_cols=153 Identities=15% Similarity=0.056 Sum_probs=115.3
Q ss_pred CcceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccE
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 514 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~ 514 (608)
...++.+.+..+..... +... +++|+.|.+.++... .. + +..+++|+.|++++|.+..+| ++.+++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~----~~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNIT----TL-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCS----CC-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCC----eE-c--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 35688888888776632 2222 889999999988765 22 2 788899999999999988876 888999999
Q ss_pred EEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeeccCC-Cc
Q 039772 515 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-CC 593 (608)
Q Consensus 515 L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~~~-~~ 593 (608)
|++++|.+..+| + +++++|++|++++|.+..+| ++++++|++|++++|. ....+ .++.+..|+.++++.+ -.
T Consensus 111 L~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~-~~~~~-~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTKLD--V-SQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK-KITKL-DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EECCSSCCSCCC--C-TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCS-CCCCC-CCTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCeec--C-CCCCcCCEEECCCCccceec--cccCCcCCEEECCCCC-ccccc-ccccCCcCCEEECCCCccc
Confidence 999999998887 7 89999999999999888885 8889999999999853 23323 4666888888888832 22
Q ss_pred ccchhcCCCCCCCC
Q 039772 594 CTEDLLGRLPNLQN 607 (608)
Q Consensus 594 ~~~~~l~~L~~L~~ 607 (608)
.+ . ++.+++|+.
T Consensus 184 ~l-~-l~~l~~L~~ 195 (457)
T 3bz5_A 184 EL-D-VSQNKLLNR 195 (457)
T ss_dssp CC-C-CTTCTTCCE
T ss_pred ee-c-cccCCCCCE
Confidence 22 2 456666654
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.07 E-value=5.1e-10 Score=104.97 Aligned_cols=121 Identities=16% Similarity=0.168 Sum_probs=100.7
Q ss_pred eEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEec
Q 039772 462 HSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDM 541 (608)
Q Consensus 462 rsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L 541 (608)
+++.+.++... .++.. -.+.|+.|+++++.+..+|..+..+.+|++|++++|.|..+|+..|.++.+|++|+|
T Consensus 13 ~~l~~~~~~l~----~ip~~---~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLK----VLPKG---IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCS----SCCSC---CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCC----cCCCC---CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 45666665554 22222 235899999999999999999999999999999999999998754499999999999
Q ss_pred cccccccchh-HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeeccCC
Q 039772 542 PFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISALHP 591 (608)
Q Consensus 542 ~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~~~ 591 (608)
++|.+..+|. .++.+++|++|++++|. +..+| .+..|..|+.++++++
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGND--ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCC--CCeeChhhhhcCccccEEEeCCC
Confidence 9999998876 69999999999999987 66677 4788999999999843
No 115
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.07 E-value=5.6e-10 Score=125.70 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=47.3
Q ss_pred hccccceeEeecCCCcCccCCc-ccCCCCCccEEEecCCCCCcCCh---------HHHhcCccCcEEeccccccccchh-
Q 039772 483 CGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPS---------SLLSNLLNLYTLDMPFSYIEHTAD- 551 (608)
Q Consensus 483 ~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~Lr~L~l~~~~i~~LP~---------si~~~L~~L~~L~L~~~~l~~lP~- 551 (608)
|..+++|+.|++++|.+..+|+ .+..+.+|++|++++|.+..++. .+ +.+++|++|+|++|.+..+|.
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~ 554 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL-KGLSHLHILNLESNGFDEIPVE 554 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTT-TTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhh-cCCCCCCEEECCCCCCCCCCHH
Confidence 4444444444444444444332 24444445555554444443321 12 444455555555554444444
Q ss_pred HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 552 EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 552 ~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
.++++++|++|++++|. +..+| .+..+..|+.++++
T Consensus 555 ~~~~l~~L~~L~Ls~N~--l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNN--LNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp TTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECT
T ss_pred HcccccCcceeECCCCC--CCcCCHhHhCCCCCCCEEECC
Confidence 24455555555555443 33344 23445555555554
No 116
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.06 E-value=3e-10 Score=115.11 Aligned_cols=144 Identities=17% Similarity=0.070 Sum_probs=117.3
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcc--hHHhh--ccccceeEeecCCCcCccCC---cc-c
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMD--WEKIC--GMFKLLRVLDLGSLVLIQYP---SG-I 506 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~--~~~~~--~~~~~Lr~L~L~~~~l~~lp---~~-i 506 (608)
..+++|.+..+......+..+ +++|+.|.+.++... +. .+..+ ..+++|+.|++++|.+..+| .. +
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL----GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC----HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC----cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 689999999988875554555 899999999998753 22 12233 88999999999999988443 22 3
Q ss_pred CCCCCccEEEecCCCCCcCC--hHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccc
Q 039772 507 ENLFLLRYLKLNIPSLKSLP--SSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLN 584 (608)
Q Consensus 507 ~~L~~Lr~L~l~~~~i~~LP--~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~ 584 (608)
..+++|++|++++|.+...+ ..+ ..+++|++|+|++|.+..+|..+. ++|++|++++|. +..+|.+..+..|+
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~--l~~~p~~~~l~~L~ 299 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR--LDRNPSPDELPQVG 299 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC--CCSCCCTTTSCEEE
T ss_pred hcCCCCCEEECCCCcCCcccchhhh-hhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC--CCCChhHhhCCCCC
Confidence 57799999999999998765 344 678999999999999999999887 899999999987 56668778899999
Q ss_pred eeecc
Q 039772 585 FISAL 589 (608)
Q Consensus 585 ~l~~~ 589 (608)
.++++
T Consensus 300 ~L~L~ 304 (312)
T 1wwl_A 300 NLSLK 304 (312)
T ss_dssp EEECT
T ss_pred EEecc
Confidence 99998
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.05 E-value=3.8e-10 Score=105.80 Aligned_cols=119 Identities=16% Similarity=0.111 Sum_probs=98.2
Q ss_pred eEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcc--cCCCCCccEEEecCCCCCcC-ChHHHhcCccCcE
Q 039772 462 HSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSG--IENLFLLRYLKLNIPSLKSL-PSSLLSNLLNLYT 538 (608)
Q Consensus 462 rsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~--i~~L~~Lr~L~l~~~~i~~L-P~si~~~L~~L~~ 538 (608)
+++.+.++... .++.. + ...|+.|+++++.+..+|.. ++.+++|++|+|++|.+..+ |..+ +++.+|++
T Consensus 11 ~~l~~s~~~l~----~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLK----EIPRD-I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQE 82 (192)
T ss_dssp TEEECTTSCCS----SCCSC-C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCE
T ss_pred CEEEcCCCCcC----cCccC-C--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCE
Confidence 67777777654 22222 2 23899999999999988864 89999999999999999988 5667 99999999
Q ss_pred Eeccccccccchh-HhcccccCcEEEecCCCCCCcC-CC-CCCCCcccceeeccC
Q 039772 539 LDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHP-GK-YCGSLENLNFISALH 590 (608)
Q Consensus 539 L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~-lP-~i~~L~~L~~l~~~~ 590 (608)
|+|++|.+..+|. .++++++|++|++++|. +.. .| .++.+..|+.+++++
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQ--ISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSC--CCEECTTSSTTCTTCCEEECTT
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCc--CCeeCHHHhhcCCCCCEEEeCC
Confidence 9999999998876 48999999999999987 443 46 888899999999983
No 118
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=1.6e-10 Score=106.50 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=74.4
Q ss_pred cceeEeecCCCcCccC-CcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhH-hcccccCcEEEe
Q 039772 487 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADE-FWKMNKLRHLNF 564 (608)
Q Consensus 487 ~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l 564 (608)
+.|+.|+|++|.+..+ |..++.+++|++|+|++|.|..+|..+|+++++|++|+|++|.+..+|.. ++++++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 7788999999998877 56788899999999999999988887657889999999999988888875 888999999999
Q ss_pred cCCCCCCcCCC-CCCC
Q 039772 565 GSITLPAHPGK-YCGS 579 (608)
Q Consensus 565 ~~~~~~~~~lP-~i~~ 579 (608)
++|. +...| .+..
T Consensus 113 ~~N~--~~c~~~~~~~ 126 (174)
T 2r9u_A 113 YNNP--WDCECRDIMY 126 (174)
T ss_dssp CSSC--BCTTBGGGHH
T ss_pred CCCC--cccccccHHH
Confidence 9875 33344 4433
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.04 E-value=1e-09 Score=117.34 Aligned_cols=152 Identities=18% Similarity=0.122 Sum_probs=121.8
Q ss_pred CcceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccE
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 514 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~ 514 (608)
...++++.+..+.... .+.. +++|+.|.+.++... .. .+..+++|+.|++++|.+..+| ++.+++|++
T Consensus 63 l~~L~~L~Ls~n~l~~--~~~~~l~~L~~L~Ls~N~l~----~~---~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT--LDLSQNTNLTYLACDSNKLT----NL---DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp CTTCSEEECCSSCCSC--CCCTTCTTCSEEECCSSCCS----CC---CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCcCCe--EccccCCCCCEEECcCCCCc----ee---ecCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 4678899998887763 2322 899999999998875 22 2788999999999999998886 899999999
Q ss_pred EEecCCCCCcCChHHHhcCccCcEEecccc-ccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeeccCCC-
Q 039772 515 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFS-YIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPC- 592 (608)
Q Consensus 515 L~l~~~~i~~LP~si~~~L~~L~~L~L~~~-~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~~~~- 592 (608)
|++++|.+..+| + +++++|++|++++| .+..+ .++.+++|++|++++|. +..+| ++.+..|+.++++.+.
T Consensus 132 L~l~~N~l~~l~--l-~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~--l~~l~-l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 132 LNCARNTLTEID--V-SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK--ITELD-VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp EECTTSCCSCCC--C-TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC--CCCCC-CTTCTTCCEEECCSSCC
T ss_pred EECCCCccceec--c-ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc--cceec-cccCCCCCEEECcCCcC
Confidence 999999999886 7 99999999999999 77777 48899999999999976 55567 6678888899888322
Q ss_pred cccchhcCCCCCCCCC
Q 039772 593 CCTEDLLGRLPNLQNL 608 (608)
Q Consensus 593 ~~~~~~l~~L~~L~~L 608 (608)
..+ . ++.+++|+.|
T Consensus 204 ~~~-~-l~~l~~L~~L 217 (457)
T 3bz5_A 204 TKL-D-LNQNIQLTFL 217 (457)
T ss_dssp SCC-C-CTTCTTCSEE
T ss_pred Cee-c-cccCCCCCEE
Confidence 222 4 6677777653
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=8.5e-10 Score=101.79 Aligned_cols=103 Identities=22% Similarity=0.244 Sum_probs=90.6
Q ss_pred ccceeEeecCCCcCccCCcc-cCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhH-hcccccCcEEE
Q 039772 486 FKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADE-FWKMNKLRHLN 563 (608)
Q Consensus 486 ~~~Lr~L~L~~~~l~~lp~~-i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~ 563 (608)
.++|+.|+++++.+..+|.. ++.+.+|++|++++|.+..+|...|+.+.+|++|++++|.+..+|.. ++++++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 36899999999999988764 58999999999999999999887558999999999999999998875 68999999999
Q ss_pred ecCCCCCCcCCC-C-CCCCcccceeeccC
Q 039772 564 FGSITLPAHPGK-Y-CGSLENLNFISALH 590 (608)
Q Consensus 564 l~~~~~~~~~lP-~-i~~L~~L~~l~~~~ 590 (608)
+++|. +..+| . +..+..|+.++++.
T Consensus 107 l~~N~--l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 107 LDTNQ--LKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCSSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCc--ceEeCHHHhcCCcccCEEEecC
Confidence 99976 56788 5 57799999999983
No 121
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.02 E-value=1.1e-09 Score=120.31 Aligned_cols=163 Identities=16% Similarity=0.059 Sum_probs=124.8
Q ss_pred ceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCC---cccCCCCCccE
Q 039772 438 KVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYP---SGIENLFLLRY 514 (608)
Q Consensus 438 ~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp---~~i~~L~~Lr~ 514 (608)
.++.+.+..+..........+++|+.|.+.++... ...+..+..+++|+.|++++|.+..+| ..++.+++|++
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT----DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC----TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccc----cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 47778888776542111122789999999998876 455677889999999999999988554 67889999999
Q ss_pred EEecCCCCCc-CChHHHhcCccCcEEeccccccc-cchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc-C
Q 039772 515 LKLNIPSLKS-LPSSLLSNLLNLYTLDMPFSYIE-HTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL-H 590 (608)
Q Consensus 515 L~l~~~~i~~-LP~si~~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~-~ 590 (608)
|++++|.+.. +|...|..+++|++|++++|.+. .+|..+. ++|++|++++|. +..+| ++..+..|+.++++ +
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~--l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR--IMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC--CCCCCTTTTSSCCCSEEECCSS
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc--CcccChhhcCCCCCCEEECCCC
Confidence 9999999987 88875488999999999999774 5555443 789999999976 66899 88899999999998 3
Q ss_pred CCcccchh-cCCCCCCCCC
Q 039772 591 PCCCTEDL-LGRLPNLQNL 608 (608)
Q Consensus 591 ~~~~~~~~-l~~L~~L~~L 608 (608)
.-..++.+ ++.+++|+.|
T Consensus 484 ~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 484 QLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCCCCCTTSTTTCTTCCCE
T ss_pred CCCCCCHHHHhcCCCCCEE
Confidence 22334432 5667776653
No 122
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=9.2e-10 Score=101.38 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=86.1
Q ss_pred eEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhH-hcccccCcEEEecCCC
Q 039772 490 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADE-FWKMNKLRHLNFGSIT 568 (608)
Q Consensus 490 r~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 568 (608)
+.++++++.+..+|..+. .+|++|+|++|.|..+|+..|+++++|++|+|++|.+..+|.. ++++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 689999999999998875 8999999999999988554339999999999999999999986 5899999999999987
Q ss_pred CCCcCCC-C-CCCCcccceeeccC
Q 039772 569 LPAHPGK-Y-CGSLENLNFISALH 590 (608)
Q Consensus 569 ~~~~~lP-~-i~~L~~L~~l~~~~ 590 (608)
+..+| + ++.|..|+.+++++
T Consensus 93 --l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 93 --LKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp --CCCCCTTTTTTCTTCSEEECCS
T ss_pred --cceeCHHHhccccCCCEEEeCC
Confidence 66788 5 88899999999983
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.98 E-value=1.7e-09 Score=115.50 Aligned_cols=115 Identities=18% Similarity=0.094 Sum_probs=60.8
Q ss_pred ccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcE
Q 039772 459 SQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYT 538 (608)
Q Consensus 459 ~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~ 538 (608)
++|++|.+.++... . ++ .+..+++|+.|++++|.+..+|..+ .+|++|++++|.+..+| ++ +++++|++
T Consensus 131 ~~L~~L~L~~n~l~----~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~-~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE----K-LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-EL-QNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCS----S-CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CC-TTCTTCCE
T ss_pred CCCCEEECcCCCCC----C-Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cc-cCCCCCCE
Confidence 34555555554433 1 11 2555555555555555555555432 25555555555555555 35 55566666
Q ss_pred EeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCCCcccceeecc
Q 039772 539 LDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 589 (608)
Q Consensus 539 L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~L~~L~~l~~~ 589 (608)
|++++|.+..+|... .+|++|++++|. +..+|.++.+..|+.++++
T Consensus 200 L~l~~N~l~~l~~~~---~~L~~L~l~~n~--l~~lp~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 200 IYADNNSLKKLPDLP---LSLESIVAGNNI--LEELPELQNLPFLTTIYAD 245 (454)
T ss_dssp EECCSSCCSSCCCCC---TTCCEEECCSSC--CSSCCCCTTCTTCCEEECC
T ss_pred EECCCCcCCcCCCCc---CcccEEECcCCc--CCcccccCCCCCCCEEECC
Confidence 666555555555422 355566666543 3345555556666666665
No 124
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=1.6e-09 Score=99.43 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=77.2
Q ss_pred ceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccC-CcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEE
Q 039772 461 LHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTL 539 (608)
Q Consensus 461 LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L 539 (608)
.+++.+.++... .++ ..+ .+.|+.|+|++|.+..+ |..+..+.+|++|+|++|.|..+|+.+|.++++|++|
T Consensus 11 ~~~l~~s~n~l~----~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLA----SVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCS----SCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcC----ccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 456667666554 222 212 37788888888888877 5668888888888888888888888765788888888
Q ss_pred eccccccccchh-HhcccccCcEEEecCCC
Q 039772 540 DMPFSYIEHTAD-EFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 540 ~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 568 (608)
+|++|.+..+|. .++++++|++|++++|.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 888888888877 47888888888888875
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=8.9e-10 Score=101.06 Aligned_cols=95 Identities=21% Similarity=0.232 Sum_probs=48.6
Q ss_pred eEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCCh-HHHhcCccCcEEeccccccccchhH-hcccccCcEEEecCC
Q 039772 490 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPS-SLLSNLLNLYTLDMPFSYIEHTADE-FWKMNKLRHLNFGSI 567 (608)
Q Consensus 490 r~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~-si~~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~~ 567 (608)
+.++++++.+..+|..+. .+|++|+|++|.|..+|+ .+ +++.+|++|+|++|.+..+|.. +.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVF-DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhh-cCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 445555555555554442 455555555555555532 23 5555555555555555555543 345555555555554
Q ss_pred CCCCcCCC--CCCCCcccceeecc
Q 039772 568 TLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 568 ~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
. +..+| .+++|..|+.++++
T Consensus 89 ~--l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 89 Q--LKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp C--CCCCCTTTTTTCTTCCEEECC
T ss_pred c--cCEeCHHHhcCCCCCCEEEeC
Confidence 4 33344 24445555555554
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.97 E-value=1.6e-09 Score=118.43 Aligned_cols=131 Identities=17% Similarity=0.086 Sum_probs=88.0
Q ss_pred cceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLK 516 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~ 516 (608)
.+++.|.+..+.... ++. +..+|+.|.+.+|... . ++. .+++|+.|++++|.+..+|. .+++|++|+
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~----~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQLT----M-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLS 166 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCS----C-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred CCCCEEEccCCCCCC-cch-hhcCCCEEECCCCcCC----C-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEE
Confidence 455566665555442 222 3236666666666554 2 122 56677777777777777775 467788888
Q ss_pred ecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccC-------cEEEecCCCCCCcCCC-CCCCCcccceeec
Q 039772 517 LNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKL-------RHLNFGSITLPAHPGK-YCGSLENLNFISA 588 (608)
Q Consensus 517 l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L-------~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~ 588 (608)
+++|.+..+|. + + .+|++|+|++|.+..+|. +.. +| ++|++++|. +..+| .+.+|..|+.+++
T Consensus 167 Ls~N~L~~lp~-l-~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~--l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 167 VRNNQLTFLPE-L-P--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR--ITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp CCSSCCSCCCC-C-C--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSC--CCCCCGGGGGSCTTEEEEC
T ss_pred CCCCCCCCcch-h-h--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCc--ceecCHHHhcCCCCCEEEe
Confidence 88888888887 6 6 788888888888888887 654 66 888888866 55688 7777888888888
Q ss_pred c
Q 039772 589 L 589 (608)
Q Consensus 589 ~ 589 (608)
+
T Consensus 238 ~ 238 (571)
T 3cvr_A 238 E 238 (571)
T ss_dssp C
T ss_pred e
Confidence 7
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.94 E-value=3.8e-09 Score=116.81 Aligned_cols=30 Identities=13% Similarity=0.022 Sum_probs=13.6
Q ss_pred cCcEEeccccccccchhHhcccccCcEEEecCC
Q 039772 535 NLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSI 567 (608)
Q Consensus 535 ~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~ 567 (608)
+|++|++++|.+..+| ..+++|++|++++|
T Consensus 222 ~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 222 GLKELIVSGNRLTSLP---VLPSELKELMVSGN 251 (622)
T ss_dssp TCCEEECCSSCCSCCC---CCCTTCCEEECCSS
T ss_pred CCCEEEccCCccCcCC---CCCCcCcEEECCCC
Confidence 3444444444444444 23344444444443
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.92 E-value=2.6e-09 Score=116.67 Aligned_cols=149 Identities=15% Similarity=0.095 Sum_probs=82.8
Q ss_pred cceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLK 516 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~ 516 (608)
..++.|.+..+... .++ ..+++|++|.+.+|... . ++. +.. +|+.|++++|.+..+|. .+++|++|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip-~~l~~L~~L~Ls~N~l~----~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP-ELPASLEYLDACDNRLS----T-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS-CCC-CCCTTCCEEECCSSCCS----C-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCc-ccc-cccCCCCEEEccCCCCC----C-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEe
Confidence 45666666666555 122 22666677776666554 2 222 322 66677777776666665 456677777
Q ss_pred ecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCCCCCC-C----cccceeecc-C
Q 039772 517 LNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGKYCGS-L----ENLNFISAL-H 590 (608)
Q Consensus 517 l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~i~~-L----~~L~~l~~~-~ 590 (608)
+++|.++.+|. .+++|++|+|++|.+..+|. ++ ++|++|++++|. +..+|.++. | ..|+.++++ +
T Consensus 147 Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~--L~~lp~~~~~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 147 ADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL--LESLPAVPVRNHHSEETEIFFRCREN 217 (571)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC--CSSCCCCC--------CCEEEECCSS
T ss_pred CCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC--CCchhhHHHhhhcccccceEEecCCC
Confidence 77766666665 34566677777776666666 54 667777776655 345553322 1 122666665 2
Q ss_pred CCcccchhcCCCCCCCC
Q 039772 591 PCCCTEDLLGRLPNLQN 607 (608)
Q Consensus 591 ~~~~~~~~l~~L~~L~~ 607 (608)
....++.++..+++|+.
T Consensus 218 ~l~~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 218 RITHIPENILSLDPTCT 234 (571)
T ss_dssp CCCCCCGGGGGSCTTEE
T ss_pred cceecCHHHhcCCCCCE
Confidence 22223322555555543
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.92 E-value=5.9e-09 Score=108.62 Aligned_cols=139 Identities=11% Similarity=0.023 Sum_probs=95.3
Q ss_pred CCCCceechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhcCcccccee------eeeeeEecccc--hHH
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF------DCHAWIPDISY--ADQ 193 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~--~~~ 193 (608)
.+..++||+.+++++..++... ....+.+.|+|++|+||||+|+++++ .....+ -..+|++.... ...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 4578999999999999998542 33467889999999999999999998 443321 22556665544 778
Q ss_pred HHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC--CCcEEEEEcCCCCHh----HHHHHhhhcC---CC--CCCcEEE
Q 039772 194 ILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIEDVWTIG----VWDVIREILP---DN--HNRSRVL 262 (608)
Q Consensus 194 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~----~~~~l~~~~~---~~--~~gs~Ii 262 (608)
+...++.+++...+ ....+..+....+.+.+. +++.+||||+++... ..+.+...+. .. ..+..+|
T Consensus 95 ~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 95 VASAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 88889998876433 234456666777777773 468999999998653 2233332222 11 4466888
Q ss_pred EEccC
Q 039772 263 ITLTQ 267 (608)
Q Consensus 263 vTTR~ 267 (608)
.||+.
T Consensus 172 ~~t~~ 176 (387)
T 2v1u_A 172 GITNS 176 (387)
T ss_dssp EECSC
T ss_pred EEECC
Confidence 88887
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.90 E-value=5.6e-09 Score=108.82 Aligned_cols=138 Identities=13% Similarity=0.030 Sum_probs=93.9
Q ss_pred CCCceechhhHHHHHHHHhc--CCCCceEEEEEcCCCcchHHHHHHHhcCccccce--------eeeeeeEeccc---ch
Q 039772 125 SRDTVGLDDRMEELLDLLIE--GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY--------FDCHAWIPDIS---YA 191 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--------F~~~~wv~vs~---~~ 191 (608)
+..++||+.+++++..++.. .....+.+.|+|++|+||||+|+++++ ..... ....+|++.+. ..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 47899999999999988865 233457899999999999999999998 44322 22356666443 35
Q ss_pred HHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCHhH---HHH-HhhhcCCCCCCcEEEEEccC
Q 039772 192 DQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTIGV---WDV-IREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 192 ~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~---~~~-l~~~~~~~~~gs~IivTTR~ 267 (608)
..+...++..+.+... + ....+.......+.+.+..++.+|||||++.... .+. +...+... .+..||+||+.
T Consensus 97 ~~~~~~l~~~l~~~~~-~-~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSV-P-KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHHCSCC-C-SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred HHHHHHHHHHhcCCCC-C-CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 6677777777733211 0 1233446677788888887777999999976421 222 22222222 68899999988
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.89 E-value=5.4e-10 Score=116.78 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=73.7
Q ss_pred ccceEEeecCCCCCCCCCcchH---HhhccccceeEeecCCCcCc------cCCcccCCCCCccEEEecCCCC-----Cc
Q 039772 459 SQLHSLLCCSPESRHFDPMDWE---KICGMFKLLRVLDLGSLVLI------QYPSGIENLFLLRYLKLNIPSL-----KS 524 (608)
Q Consensus 459 ~~LrsL~l~~~~~~~~~~~~~~---~~~~~~~~Lr~L~L~~~~l~------~lp~~i~~L~~Lr~L~l~~~~i-----~~ 524 (608)
++|++|.+.+|.... ...+ ..+..+++|+.|++++|.+. -.|..+..+++|++|+|++|.+ ..
T Consensus 159 ~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 159 PPLRSIICGRNRLEN---GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp CCCCEEECCSSCCTG---GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred CCCcEEECCCCCCCc---HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence 566666666665431 1122 34556666677777766655 1233566666677777776666 45
Q ss_pred CChHHHhcCccCcEEecccccccc-----chhHh--cccccCcEEEecCCCCCCcC-----CC-CC-CCCcccceeecc
Q 039772 525 LPSSLLSNLLNLYTLDMPFSYIEH-----TADEF--WKMNKLRHLNFGSITLPAHP-----GK-YC-GSLENLNFISAL 589 (608)
Q Consensus 525 LP~si~~~L~~L~~L~L~~~~l~~-----lP~~i--~~L~~L~~L~l~~~~~~~~~-----lP-~i-~~L~~L~~l~~~ 589 (608)
+|..+ ..+++|++|+|++|.+.. +|..+ +++++|++|++++|. +.. +| .+ .++.+|+.++++
T Consensus 236 l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~--i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 236 LAIAL-KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE--IELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHG-GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC--CBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHH-ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc--CCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 66666 666677777777665543 35555 336667777776654 333 55 44 346666666666
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.86 E-value=1e-09 Score=114.65 Aligned_cols=131 Identities=16% Similarity=0.050 Sum_probs=90.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-----cCCcccCCC---------CCccEEEecCCCCC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-----QYPSGIENL---------FLLRYLKLNIPSLK 523 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~L---------~~Lr~L~l~~~~i~ 523 (608)
+++|++|.+.++.........++..+..+++|+.|+|++|.+. .++..+..+ ++|++|++++|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 5778888887776642100135566777888888888888765 233444444 78888888888775
Q ss_pred --cCC---hHHHhcCccCcEEeccccccc------cchhHhcccccCcEEEecCCCCC---CcCCC-CCCCCcccceeec
Q 039772 524 --SLP---SSLLSNLLNLYTLDMPFSYIE------HTADEFWKMNKLRHLNFGSITLP---AHPGK-YCGSLENLNFISA 588 (608)
Q Consensus 524 --~LP---~si~~~L~~L~~L~L~~~~l~------~lP~~i~~L~~L~~L~l~~~~~~---~~~lP-~i~~L~~L~~l~~ 588 (608)
.+| ..+ +.+++|++|++++|.+. .+|..+.++++|++|++++|... ...+| .+.++.+|+.|++
T Consensus 173 ~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 173 NGSMKEWAKTF-QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp GGGHHHHHHHH-HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred cHHHHHHHHHH-HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 455 456 77888888888888776 34447788888888888886521 14467 7777888888888
Q ss_pred c
Q 039772 589 L 589 (608)
Q Consensus 589 ~ 589 (608)
+
T Consensus 252 ~ 252 (386)
T 2ca6_A 252 N 252 (386)
T ss_dssp T
T ss_pred C
Confidence 7
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.86 E-value=8.5e-09 Score=110.07 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=66.7
Q ss_pred cceEEEEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccE
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 514 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~ 514 (608)
..++.+.+..+.... .+ .+ +++|+.|.+.++... . ++ ..+.+|+.|++++|.+..+| .++.+++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~----~-lp---~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK----K-LP---DLPPSLEFIAAGNNQLEELP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS----C-CC---CCCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc----c-cC---CCcccccEEECcCCcCCcCc-cccCCCCCCE
Confidence 455555555554442 22 23 566666666665443 1 11 12235666666666666555 4666666666
Q ss_pred EEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCCCCCCcCCC
Q 039772 515 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSITLPAHPGK 575 (608)
Q Consensus 515 L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~lP 575 (608)
|++++|.+..+|... .+|++|++++|.+..+|. ++++++|++|++++|. +..+|
T Consensus 200 L~l~~N~l~~l~~~~----~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~--l~~l~ 253 (454)
T 1jl5_A 200 IYADNNSLKKLPDLP----LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL--LKTLP 253 (454)
T ss_dssp EECCSSCCSSCCCCC----TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC--CSSCC
T ss_pred EECCCCcCCcCCCCc----CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc--CCccc
Confidence 666666666665522 356666666666666663 6666666666666644 33344
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=5.1e-11 Score=112.36 Aligned_cols=120 Identities=19% Similarity=0.149 Sum_probs=101.8
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
+++|+.|.+.++... . ++ .+..+++|+.|++++|.+..+|..+..+++|++|++++|.+..+| .+ +++++|+
T Consensus 47 l~~L~~L~ls~n~l~----~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~l~~L~ 118 (198)
T 1ds9_A 47 LKACKHLALSTNNIE----K-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKLVNLR 118 (198)
T ss_dssp TTTCSEEECSEEEES----C-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HHHHHSS
T ss_pred CCCCCEEECCCCCCc----c-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-ccCCCCC
Confidence 889999999988765 3 33 788899999999999999999998888899999999999999988 58 9999999
Q ss_pred EEeccccccccchh--HhcccccCcEEEecCCCCCCcCC-CC-----------CCCCcccceee
Q 039772 538 TLDMPFSYIEHTAD--EFWKMNKLRHLNFGSITLPAHPG-KY-----------CGSLENLNFIS 587 (608)
Q Consensus 538 ~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~l-P~-----------i~~L~~L~~l~ 587 (608)
+|++++|.+..+|. .+.++++|++|++++|. +... |. +..+..|+.++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCH--HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCc--cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999999998876 79999999999999965 3222 22 55577777776
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.86 E-value=4.6e-09 Score=109.35 Aligned_cols=141 Identities=12% Similarity=0.108 Sum_probs=94.7
Q ss_pred CCCCCCceechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhcCccccceee---eeeeEecccc--hHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFD---CHAWIPDISY--ADQI 194 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~wv~vs~~--~~~l 194 (608)
...+..++||+.+++.+.+++... ....+.+.|+|++|+||||||+++++ .....|. ..+|+..... ...+
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHH
Confidence 344578999999999999998752 33456899999999999999999998 5544432 3556665443 6677
Q ss_pred HHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC--CCcEEEEEcCCCCH------hHHHHHhhhcCC-CCCCcEEEEEc
Q 039772 195 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIEDVWTI------GVWDVIREILPD-NHNRSRVLITL 265 (608)
Q Consensus 195 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~------~~~~~l~~~~~~-~~~gs~IivTT 265 (608)
...++..++...+ ....+..+....+.+.+. +++.+||||+++.. +.+..+...+.. ...+..+|+||
T Consensus 94 ~~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 94 LADLLESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHTTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 7788777754332 123345566666666664 45899999999653 234444333322 23356778888
Q ss_pred cC
Q 039772 266 TQ 267 (608)
Q Consensus 266 R~ 267 (608)
+.
T Consensus 171 ~~ 172 (386)
T 2qby_A 171 ND 172 (386)
T ss_dssp SC
T ss_pred CC
Confidence 87
No 136
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.85 E-value=8.6e-09 Score=105.79 Aligned_cols=134 Identities=9% Similarity=0.092 Sum_probs=88.3
Q ss_pred CCCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEeccc--------chH
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDIS--------YAD 192 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--------~~~ 192 (608)
+...+..++||+.+++++.+++..+ +++.|+|++|+|||||++++++ +.. .+|+++.. ...
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLN--ERP-----GILIDCRELYAERGHITRE 75 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHH--HSS-----EEEEEHHHHHHTTTCBCHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHH--HcC-----cEEEEeecccccccCCCHH
Confidence 4455678999999999999998763 6899999999999999999998 331 56776432 134
Q ss_pred HHHHHHHHHhCC---------------CCCcccccccCHHHHHHHHHHHhCC-CcEEEEEcCCCCHh---------HHHH
Q 039772 193 QILDIVIKFLMP---------------SSRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIEDVWTIG---------VWDV 247 (608)
Q Consensus 193 ~l~~~il~~l~~---------------~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~---------~~~~ 247 (608)
.+.+.+...+.. .... .....+..+....+.+.... ++++||+||++... .+..
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTL-EPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTS-CGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceee-ccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 455555554432 0000 01124556666777666643 49999999997642 2333
Q ss_pred HhhhcCCCCCCcEEEEEccC
Q 039772 248 IREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 248 l~~~~~~~~~gs~IivTTR~ 267 (608)
+...... .++.++|+|++.
T Consensus 155 L~~~~~~-~~~~~~il~g~~ 173 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSE 173 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESS
T ss_pred HHHHHHh-cCCeEEEEECCc
Confidence 3332222 247889999887
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.84 E-value=2.3e-08 Score=104.34 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=97.7
Q ss_pred CCCCceechhhHHHHHHHHhc----CCCCceEEEEEcCCCcchHHHHHHHhcCcccccee-eeeeeEecccc--hHHHHH
Q 039772 124 KSRDTVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF-DCHAWIPDISY--ADQILD 196 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~--~~~l~~ 196 (608)
.+..++||+.+++++..++.. .....+.+.|+|.+|+||||||+++++ ...... -..+|+..+.. ...+..
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHH
Confidence 447899999999999999876 222334899999999999999999998 444331 23556665554 778888
Q ss_pred HHHHHhCCCCCcccccccCHHHHHHHHHHHhC--CCcEEEEEcCCCCH--hHHHHHhhhcCCCC----CCcEEEEEccC
Q 039772 197 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIEDVWTI--GVWDVIREILPDNH----NRSRVLITLTQ 267 (608)
Q Consensus 197 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~~----~gs~IivTTR~ 267 (608)
.++..++...+ ....+.......+...+. +++.+||||+++.. +....+...+.... .+..||+||+.
T Consensus 93 ~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 93 EIARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 88888865432 133455666666666664 56889999999763 45555555543321 47788888887
No 138
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.81 E-value=1.6e-08 Score=111.73 Aligned_cols=100 Identities=18% Similarity=0.034 Sum_probs=70.6
Q ss_pred CcceEEEEEecccccccccccccccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEE
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYYDSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 515 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L 515 (608)
+..++.|.+..+... ..+..+++|++|.+.+|... .+ +. .+++|+.|++++|.+..+|. .+.+|++|
T Consensus 60 ~~~L~~L~L~~N~l~--~lp~~l~~L~~L~Ls~N~l~----~l-p~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 60 PAHITTLVIPDNNLT--SLPALPPELRTLEVSGNQLT----SL-PV---LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp CTTCSEEEECSCCCS--CCCCCCTTCCEEEECSCCCS----CC-CC---CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCCcEEEecCCCCC--CCCCcCCCCCEEEcCCCcCC----cC-CC---CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 357788888877665 22224778888888887764 12 21 67788888888888887776 56778888
Q ss_pred EecCCCCCcCChHHHhcCccCcEEeccccccccchhH
Q 039772 516 KLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADE 552 (608)
Q Consensus 516 ~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~ 552 (608)
++++|.+..+|.. +++|++|++++|.+..+|..
T Consensus 127 ~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~~ 159 (622)
T 3g06_A 127 WIFGNQLTSLPVL----PPGLQELSVSDNQLASLPAL 159 (622)
T ss_dssp ECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCCC
T ss_pred ECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCCc
Confidence 8888888888763 36778888888877766653
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.80 E-value=1e-08 Score=105.53 Aligned_cols=97 Identities=20% Similarity=0.090 Sum_probs=40.6
Q ss_pred eeEeecCCCcCccCCcccCCCCCccEEEecC-CCCCcCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecCC
Q 039772 489 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNI-PSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGSI 567 (608)
Q Consensus 489 Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~-~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~~ 567 (608)
++.|+|++|.++.+|..+....+|+.|++++ +.+..+|+.+|+.+++|++|+|++|.+..+|.. .+.+|++|.+.+
T Consensus 156 l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~- 232 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARS- 232 (350)
T ss_dssp CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTT-
T ss_pred hhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhcc-
Confidence 4444444444444444444444444444432 344444443334444444444444444444432 133333333333
Q ss_pred CCCCcCCCCCCCCcccceeec
Q 039772 568 TLPAHPGKYCGSLENLNFISA 588 (608)
Q Consensus 568 ~~~~~~lP~i~~L~~L~~l~~ 588 (608)
+..++.+|.+.+|..|+.+++
T Consensus 233 ~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 233 TYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp CTTCCCCCCTTTCCSCCEEEC
T ss_pred CCCcCcCCCchhCcChhhCcC
Confidence 222344443334444444443
No 140
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.76 E-value=1.7e-08 Score=103.86 Aligned_cols=136 Identities=10% Similarity=0.073 Sum_probs=81.7
Q ss_pred CCCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEeccc-------chHH
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDIS-------YADQ 193 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-------~~~~ 193 (608)
+...+..+|||+.+++.+.+ +.. +++.|+|++|+|||||++++++ +.... .+|++... ....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGIN--ELNLP---YIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHH--HHTCC---EEEEEGGGGTTCSCCCHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHH--hcCCC---EEEEEchhhccccCCCHHH
Confidence 34456789999999999999 654 5999999999999999999998 44322 46776542 1222
Q ss_pred HHHHHHHHhC-------------CC-CCc--cc----c-----cccCHHHHHHHHHHHhCCCcEEEEEcCCCCHh-----
Q 039772 194 ILDIVIKFLM-------------PS-SRL--SE----I-----MDKNYEMKKIILHEYLMTKRYLIVIEDVWTIG----- 243 (608)
Q Consensus 194 l~~~il~~l~-------------~~-~~~--~~----~-----~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----- 243 (608)
+...+...+. .. ... +. . ...........+.+.-. ++++|||||++...
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 2222222221 00 000 00 0 12344555555555433 49999999997632
Q ss_pred H-HHHHhhhcCCCCCCcEEEEEccCchh
Q 039772 244 V-WDVIREILPDNHNRSRVLITLTQIEM 270 (608)
Q Consensus 244 ~-~~~l~~~~~~~~~gs~IivTTR~~~~ 270 (608)
+ +..+.... ...++.++|+|++. ..
T Consensus 156 ~~~~~l~~~~-~~~~~~~~i~~g~~-~~ 181 (357)
T 2fna_A 156 NLLPALAYAY-DNLKRIKFIMSGSE-MG 181 (357)
T ss_dssp CCHHHHHHHH-HHCTTEEEEEEESS-HH
T ss_pred hHHHHHHHHH-HcCCCeEEEEEcCc-hH
Confidence 2 23332222 22247889999997 53
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.75 E-value=2.3e-08 Score=95.25 Aligned_cols=120 Identities=12% Similarity=0.111 Sum_probs=77.0
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHh
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFL 202 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l 202 (608)
....+++|++..++.+.+++.... .+.+.|+|.+|+||||+|+.+++ .+........|+.+...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~------------ 77 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNAS------------ 77 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETT------------
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccc------------
Confidence 344679999999999999998764 33489999999999999999998 44322222223332211
Q ss_pred CCCCCcccccccCHHHHHHHHHHHh------CCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 203 MPSSRLSEIMDKNYEMKKIILHEYL------MTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~L------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
...........+.... .+++.+||+||++.. ...+.+...+.....++++|+||+.
T Consensus 78 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 78 ---------DERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp ---------CTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred ---------cccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 0001111111122211 257899999999764 4556666665555667899999988
No 142
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.73 E-value=3.6e-08 Score=101.41 Aligned_cols=157 Identities=15% Similarity=0.033 Sum_probs=115.7
Q ss_pred EEEecccccccccccc--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCC-cCccCCc-ccCCC-CCccEEE
Q 039772 442 LNAVKRQEDFAYLDYY--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSL-VLIQYPS-GIENL-FLLRYLK 516 (608)
Q Consensus 442 l~~~~~~~~~~~~~~~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~-~l~~lp~-~i~~L-~~Lr~L~ 516 (608)
+....+......+..+ +++|+.|.+.++... ..++..+.....+..|++.++ .+..+|. .+..+ ..+++|+
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK----HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCS----SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred hcccCCcccccCchhhhhccccccccccccccc----cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 3444455543334444 889999999988775 344455666777888888664 5777764 34444 4689999
Q ss_pred ecCCCCCcCChHHHhcCccCcEEecccc-ccccchh-HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeeccCCC
Q 039772 517 LNIPSLKSLPSSLLSNLLNLYTLDMPFS-YIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISALHPC 592 (608)
Q Consensus 517 l~~~~i~~LP~si~~~L~~L~~L~L~~~-~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~~~~ 592 (608)
+++|.|+.+|..+ ....+|++|++.+| .+..+|. .++.+++|++|++++|. +..+| .+.+|+.|..+++.+ -
T Consensus 161 L~~N~i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~--l~~lp~~~~~~L~~L~~l~~~~-l 236 (350)
T 4ay9_X 161 LNKNGIQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR--IHSLPSYGLENLKKLRARSTYN-L 236 (350)
T ss_dssp CCSSCCCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC--CCCCCSSSCTTCCEEECTTCTT-C
T ss_pred cccccccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC--cCccChhhhccchHhhhccCCC-c
Confidence 9999999999998 77889999999875 8999997 56999999999999976 77888 566677777766653 3
Q ss_pred cccchhcCCCCCCCC
Q 039772 593 CCTEDLLGRLPNLQN 607 (608)
Q Consensus 593 ~~~~~~l~~L~~L~~ 607 (608)
..++. +.+|++|+.
T Consensus 237 ~~lP~-l~~l~~L~~ 250 (350)
T 4ay9_X 237 KKLPT-LEKLVALME 250 (350)
T ss_dssp CCCCC-TTTCCSCCE
T ss_pred CcCCC-chhCcChhh
Confidence 34445 667777764
No 143
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.72 E-value=6.8e-09 Score=87.87 Aligned_cols=83 Identities=24% Similarity=0.312 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccccccchHHHHHHHHHHHHchhhhHHHHHHHhhhhhcCCCcchhhhhccccccch
Q 039772 4 NFRLFSERLGRVLAGEEVTLSDAAKQPIQNLHAEVEIVTSWLSEFEYDISYILLQKIVEDEIGNPDLATVMDEINCFTCE 83 (608)
Q Consensus 4 ~~~~~l~kL~~~l~~~~~~l~~a~~~~i~~~~~el~~v~~wL~~l~y~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (608)
+++.+++||.+++ ..++.+..+++++++++++||++|+++|.++. ....+..++.++.|++++|+++|+
T Consensus 2 ~v~~ll~KL~~ll-~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~----------~~~~~~~d~~vk~W~~~vrdlaYD 70 (115)
T 3qfl_A 2 AISNLIPKLGELL-TEEFKLHKGVKKNIEDLGKELESMNAALIKIG----------EVPREQLDSQDKLWADEVRELSYV 70 (115)
T ss_dssp TTCSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH----------HhccccCCHHHHHHHHHHHHHHHH
Confidence 5678999999998 68899999999999999999999999999882 011134678899999999999999
Q ss_pred hhhhHHHHHHHHhh
Q 039772 84 SEKVIDTFINSITQ 97 (608)
Q Consensus 84 ~~~~i~~~~~~l~~ 97 (608)
+||++++|...+..
T Consensus 71 ~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 71 IEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887764
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=3.7e-08 Score=101.14 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=66.7
Q ss_pred hHHhhccccceeEeecCC-CcCccCC-cccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchhHhccc
Q 039772 479 WEKICGMFKLLRVLDLGS-LVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKM 556 (608)
Q Consensus 479 ~~~~~~~~~~Lr~L~L~~-~~l~~lp-~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L 556 (608)
+|. +..+.+|+.|+|++ |.+..+| ..++.|.+|++|+|++|.|..+|+..|++|.+|+.|+|++|.|..+|..+...
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 344 77777888888885 7787776 46778888888888888888776654488888888888888888887755444
Q ss_pred ccCcEEEecCCC
Q 039772 557 NKLRHLNFGSIT 568 (608)
Q Consensus 557 ~~L~~L~l~~~~ 568 (608)
.+|++|++.+|.
T Consensus 103 ~~L~~l~l~~N~ 114 (347)
T 2ifg_A 103 LSLQELVLSGNP 114 (347)
T ss_dssp CCCCEEECCSSC
T ss_pred CCceEEEeeCCC
Confidence 448888888765
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.68 E-value=1.2e-07 Score=91.49 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=78.2
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHh
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFL 202 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l 202 (608)
....+++||+..++.+..++..+. ..+.+.|+|++|+||||+|+++++ .....+....+.+. .. ... ..+....
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~-~~-~~~-~~~~~~~ 93 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK--GLNCETGITATPCG-VC-DNC-REIEQGR 93 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHH--HHHCTTCSCSSCCS-CS-HHH-HHHHTTC
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCCCCCc-cc-HHH-HHHhccC
Confidence 344579999999999999997653 235889999999999999999988 33322211000000 00 000 0000000
Q ss_pred CCCC-CcccccccCHHHHHHHHHHHh-----CCCcEEEEEcCCCC--HhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 203 MPSS-RLSEIMDKNYEMKKIILHEYL-----MTKRYLIVIEDVWT--IGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 203 ~~~~-~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.... ..........+.. ..+.+.+ .+++.+||+||++. ...++.+...+.....+..+|+||+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp CSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred CcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 0000 0000000111111 2222222 34689999999965 46677777776665668899999987
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=3.6e-08 Score=101.24 Aligned_cols=85 Identities=18% Similarity=0.034 Sum_probs=48.4
Q ss_pred cccceEEeecC-CCCCCCCCcchHHhhccccceeEeecCCCcCccCCc-ccCCCCCccEEEecCCCCCcCChHHHhcCcc
Q 039772 458 DSQLHSLLCCS-PESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 535 (608)
Q Consensus 458 ~~~LrsL~l~~-~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~ 535 (608)
+++|+.|.+.+ +... ..++..|..+++|+.|+|++|.+..+|+ .++.|.+|++|+|++|.+..+|+.+|..+ +
T Consensus 30 ~~~L~~L~l~~~n~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~ 104 (347)
T 2ifg_A 30 AENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-S 104 (347)
T ss_dssp CSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-C
T ss_pred CCCeeEEEccCCCCCC----CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccC-C
Confidence 55566666654 4443 3444556666666666666666654443 45666666666666666666665552233 3
Q ss_pred CcEEeccccccc
Q 039772 536 LYTLDMPFSYIE 547 (608)
Q Consensus 536 L~~L~L~~~~l~ 547 (608)
|+.|+|.+|.+.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 666666666444
No 147
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.64 E-value=8.5e-09 Score=106.71 Aligned_cols=153 Identities=17% Similarity=0.075 Sum_probs=84.2
Q ss_pred cceEEEEEecccccccccccc------c-ccceEEeecCCCCCCCCCcchHHhhcc-ccceeEeecCCCcCc-----cCC
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY------D-SQLHSLLCCSPESRHFDPMDWEKICGM-FKLLRVLDLGSLVLI-----QYP 503 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~------~-~~LrsL~l~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~l~-----~lp 503 (608)
..++.|.+..+......+... . ++|++|.+.++.........+...+.. .++|+.|+|++|.+. .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 456666666666543222211 2 677777777766541110011122333 257777777777765 344
Q ss_pred cccCCCC-CccEEEecCCCCCcCCh-HH---HhcC-ccCcEEecccccccc-----chhHhccc-ccCcEEEecCCCCCC
Q 039772 504 SGIENLF-LLRYLKLNIPSLKSLPS-SL---LSNL-LNLYTLDMPFSYIEH-----TADEFWKM-NKLRHLNFGSITLPA 571 (608)
Q Consensus 504 ~~i~~L~-~Lr~L~l~~~~i~~LP~-si---~~~L-~~L~~L~L~~~~l~~-----lP~~i~~L-~~L~~L~l~~~~~~~ 571 (608)
..+..+. +|++|++++|.+...+. .+ +..+ .+|++|+|++|.+.. +|..+..+ ++|++|++++|....
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 4445554 77777777777764443 22 0333 477777777776665 66666664 377777777765322
Q ss_pred cC---CC-CCCCCcccceeecc
Q 039772 572 HP---GK-YCGSLENLNFISAL 589 (608)
Q Consensus 572 ~~---lP-~i~~L~~L~~l~~~ 589 (608)
.. ++ .+..+.+|+.++++
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEE
T ss_pred HHHHHHHHHHhcCCCccEEEec
Confidence 11 12 23446666666665
No 148
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.64 E-value=2.4e-08 Score=103.29 Aligned_cols=149 Identities=17% Similarity=0.091 Sum_probs=82.8
Q ss_pred ceEEEEEecccccccccccc--c-----ccceEEeecCCCCCCCCCcchHHhhccc-cceeEeecCCCcCccCCc-c---
Q 039772 438 KVKRLNAVKRQEDFAYLDYY--D-----SQLHSLLCCSPESRHFDPMDWEKICGMF-KLLRVLDLGSLVLIQYPS-G--- 505 (608)
Q Consensus 438 ~~r~l~~~~~~~~~~~~~~~--~-----~~LrsL~l~~~~~~~~~~~~~~~~~~~~-~~Lr~L~L~~~~l~~lp~-~--- 505 (608)
.++.|.+..+......+..+ + ++|++|.+.++.........+...+..+ ++|+.|++++|.+...+. .
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 56667776665553222222 2 6677777776665411000111123333 677777777777664432 2
Q ss_pred -cCCC-CCccEEEecCCCCC-----cCChHHHhcCc-cCcEEeccccccccch-hHh----ccc-ccCcEEEecCCCCCC
Q 039772 506 -IENL-FLLRYLKLNIPSLK-----SLPSSLLSNLL-NLYTLDMPFSYIEHTA-DEF----WKM-NKLRHLNFGSITLPA 571 (608)
Q Consensus 506 -i~~L-~~Lr~L~l~~~~i~-----~LP~si~~~L~-~L~~L~L~~~~l~~lP-~~i----~~L-~~L~~L~l~~~~~~~ 571 (608)
+..+ .+|++|++++|.+. .++..+ ..+. +|++|+|++|.+...+ ..+ ..+ ++|++|++++|. +
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i 208 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQIL-AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL--L 208 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC--G
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHH-hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC--C
Confidence 2332 47777777777666 455555 5555 7777777777665333 233 334 577778777755 3
Q ss_pred cC-----CC-CCCC-Ccccceeecc
Q 039772 572 HP-----GK-YCGS-LENLNFISAL 589 (608)
Q Consensus 572 ~~-----lP-~i~~-L~~L~~l~~~ 589 (608)
.. +| .+.. ..+|+.++++
T Consensus 209 ~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 209 GLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp GGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred ChhHHHHHHHHHhcCCCCceEEECc
Confidence 33 34 3433 3477777777
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.7e-07 Score=94.84 Aligned_cols=118 Identities=13% Similarity=0.192 Sum_probs=75.9
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc-eee-eeeeEecccchHHHHHHHHH
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH-YFD-CHAWIPDISYADQILDIVIK 200 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~~l~~~il~ 200 (608)
....+++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++ .+.. .+. ..+++..+..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~---------- 83 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDD---------- 83 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSC----------
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccc----------
Confidence 344679999999999999998764 33388999999999999999998 4422 121 1333333322
Q ss_pred HhCCCCCcccccccCHHHHHHHHHHHh-------CCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 201 FLMPSSRLSEIMDKNYEMKKIILHEYL-------MTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~l~~~L-------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
...+.....+.... .+++.+||+||++.. ..++.+...+.....++++|+||+.
T Consensus 84 -------------~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 84 -------------RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp -------------CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred -------------cChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 01112222222211 346899999999753 4455555555444567889998877
No 150
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.39 E-value=1.7e-07 Score=103.31 Aligned_cols=127 Identities=13% Similarity=0.036 Sum_probs=84.6
Q ss_pred cceEEEEEecccccccccccc---ccc-ceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc-----CCcccC
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY---DSQ-LHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ-----YPSGIE 507 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~---~~~-LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-----lp~~i~ 507 (608)
..++.|.+..+......+..+ +++ |++|.+.++..... ..+......+++|+.|+|++|.+.. ++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT--DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH--HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH--HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 457777777665443233322 334 88888877652100 1233445677888888888887542 333445
Q ss_pred CCCCccEEEecCCCCC-----cCChHHHhcCccCcEEeccccccccchhHhcccccCcEEEecC
Q 039772 508 NLFLLRYLKLNIPSLK-----SLPSSLLSNLLNLYTLDMPFSYIEHTADEFWKMNKLRHLNFGS 566 (608)
Q Consensus 508 ~L~~Lr~L~l~~~~i~-----~LP~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~ 566 (608)
.+++|++|+++++.+. .+|..+ .++++|++|++++|.+..+|..++++++|++|+++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 6778888888887765 445555 778888888888888778888888888888888864
No 151
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.38 E-value=6.5e-08 Score=103.25 Aligned_cols=152 Identities=19% Similarity=0.008 Sum_probs=89.7
Q ss_pred cceEEEEEecccccccccccc-------cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc-----CCc
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY-------DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ-----YPS 504 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~-------~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-----lp~ 504 (608)
..+++|.+..+......+... .++|+.|.+.++.........++..+..+++|+.|++++|.+.. +++
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 456667776665442211111 23777777777755410000234556677778888888777653 222
Q ss_pred -ccCCCCCccEEEecCCCCCc-----CChHHHhcCccCcEEeccccccccc-hhHhcc-----cccCcEEEecCCCCCCc
Q 039772 505 -GIENLFLLRYLKLNIPSLKS-----LPSSLLSNLLNLYTLDMPFSYIEHT-ADEFWK-----MNKLRHLNFGSITLPAH 572 (608)
Q Consensus 505 -~i~~L~~Lr~L~l~~~~i~~-----LP~si~~~L~~L~~L~L~~~~l~~l-P~~i~~-----L~~L~~L~l~~~~~~~~ 572 (608)
....+.+|++|++++|.+.. +|..+ .++++|++|++++|.+... +..+.. .++|++|++++|.....
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVL-RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHH-HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHH-hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 22356778888888877765 67777 7778888888888766422 122222 25788888887542211
Q ss_pred ---CCC-CCCCCcccceeecc
Q 039772 573 ---PGK-YCGSLENLNFISAL 589 (608)
Q Consensus 573 ---~lP-~i~~L~~L~~l~~~ 589 (608)
.+| .+..+++|+.++++
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHhhCCCccEEEcc
Confidence 134 45557788888887
No 152
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.37 E-value=6.4e-08 Score=103.31 Aligned_cols=154 Identities=16% Similarity=0.047 Sum_probs=109.0
Q ss_pred CcceEEEEEeccccccccccc-c--cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc-CCcccC-CCC
Q 039772 436 PKKVKRLNAVKRQEDFAYLDY-Y--DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ-YPSGIE-NLF 510 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~-~--~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~i~-~L~ 510 (608)
+..+++|.+..+......... . +++|++|.+.++.........++..+..+++|+.|++++|.+.. .+..+. .+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 457888899887765433333 2 88999999999886410001345667888999999999999763 232222 344
Q ss_pred ----CccEEEecCCCCC-----cCChHHHhcCccCcEEeccccccccc-hhHhc-----ccccCcEEEecCCCCCCc---
Q 039772 511 ----LLRYLKLNIPSLK-----SLPSSLLSNLLNLYTLDMPFSYIEHT-ADEFW-----KMNKLRHLNFGSITLPAH--- 572 (608)
Q Consensus 511 ----~Lr~L~l~~~~i~-----~LP~si~~~L~~L~~L~L~~~~l~~l-P~~i~-----~L~~L~~L~l~~~~~~~~--- 572 (608)
+|++|++++|.+. .+|..+ .++++|++|++++|.+... +..+. .+++|++|++++|.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 6999999999987 568888 9999999999999977532 23332 256899999999653221
Q ss_pred CCC-CCCCCcccceeeccC
Q 039772 573 PGK-YCGSLENLNFISALH 590 (608)
Q Consensus 573 ~lP-~i~~L~~L~~l~~~~ 590 (608)
.+| .+..+.+|+.++++.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp HHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHhhCCCCCEEECcC
Confidence 134 455578999999983
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=5.4e-07 Score=91.35 Aligned_cols=124 Identities=10% Similarity=0.064 Sum_probs=76.9
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeee--eeeEecccc-hHHHHHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDC--HAWIPDISY-ADQILDIV 198 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~-~~~l~~~i 198 (608)
+....+++|++..++.+..++..+. .+.+.++|++|+||||+|+.+++ .+...... .+.+..+.. -.......
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGINVIREK 96 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHHHTTHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCchHHHHHH
Confidence 3445679999999999999998764 44589999999999999999998 44222111 223332221 11111111
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 199 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 199 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
+..+....+ .-.+++.+||+||++.. +.++.+...+.....++++|+||..
T Consensus 97 ~~~~~~~~~------------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 97 VKEFARTKP------------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp HHHHHHSCC------------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred HHHHHhhCC------------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 111100000 01256889999999754 5566666666555567899999877
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.31 E-value=9.1e-07 Score=81.80 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=40.0
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....++||++.++++.+.+.... .+.+.|+|.+|+||||+|+++++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 44679999999999999987753 45678999999999999999988
No 155
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.28 E-value=5.7e-07 Score=99.17 Aligned_cols=85 Identities=14% Similarity=-0.022 Sum_probs=50.1
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-----cCCcccCCCCCccEEEecCCCCCcCChHHHhc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLKSLPSSLLSN 532 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~ 532 (608)
+++|+.|.+.++.........+...+..+++|+.|+++++.+. .++..+..+++|++|++++|.+..+|..+ ++
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~-~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF-KA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH-HH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH-hh
Confidence 5677777777664321100124445566666777777666653 33444455666777777766666666655 66
Q ss_pred CccCcEEeccc
Q 039772 533 LLNLYTLDMPF 543 (608)
Q Consensus 533 L~~L~~L~L~~ 543 (608)
+++|+.|++++
T Consensus 242 ~~~L~~L~l~~ 252 (592)
T 3ogk_B 242 AANLEEFCGGS 252 (592)
T ss_dssp CTTCCEEEECB
T ss_pred hhHHHhhcccc
Confidence 66666666654
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.19 E-value=1.5e-06 Score=90.03 Aligned_cols=127 Identities=17% Similarity=-0.004 Sum_probs=86.6
Q ss_pred cceEEEEEecccccccccccc---cccceEEeecCCCCCCCCCcchHHhh-----ccccceeEeecCCCcCc-----cCC
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY---DSQLHSLLCCSPESRHFDPMDWEKIC-----GMFKLLRVLDLGSLVLI-----QYP 503 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~---~~~LrsL~l~~~~~~~~~~~~~~~~~-----~~~~~Lr~L~L~~~~l~-----~lp 503 (608)
..++.|.+..+.......... +++|+.|.+.+|... ......+ ...+.|+.|+|++|.+. .++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~----~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG----PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC----HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC----HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 467777777776653222222 667888888887664 2222222 24567888888888875 355
Q ss_pred cccCCCCCccEEEecCCCCCc-----CChHHHhcCccCcEEeccccccc-----cchhHhcccccCcEEEecCCC
Q 039772 504 SGIENLFLLRYLKLNIPSLKS-----LPSSLLSNLLNLYTLDMPFSYIE-----HTADEFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 504 ~~i~~L~~Lr~L~l~~~~i~~-----LP~si~~~L~~L~~L~L~~~~l~-----~lP~~i~~L~~L~~L~l~~~~ 568 (608)
..+..+++|++|+|++|.|.. ++..+ ...++|++|+|++|.+. .++..+...++|++|++++|.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L-~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHHHG-GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH-hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 666677888888888887753 45556 67778888888888765 355666677888888888865
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1e-05 Score=81.08 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=73.9
Q ss_pred CceechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhcCccccc--------eeeeeeeEecccc--hHHH
Q 039772 127 DTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYNSSYVKH--------YFDCHAWIPDISY--ADQI 194 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------~F~~~~wv~vs~~--~~~l 194 (608)
.+.||++++++|...|... ......+-|+|++|.|||++|++|++ ++.. .|. .+++..... ...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~--~L~~~~~~~~~~~~~-~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD--ELITSSARKELPIFD-YIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH--HHHHTTTTTSSCCEE-EEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhhhccCCceE-EEEEeccccCCHHHH
Confidence 3889999999999888653 33467889999999999999999998 4432 232 344443332 7788
Q ss_pred HHHHHHHhCCCCCcccccccCHHHHHHHHHHH--hCCCcEEEEEcCCCCH
Q 039772 195 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY--LMTKRYLIVIEDVWTI 242 (608)
Q Consensus 195 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDdv~~~ 242 (608)
...|++++.+... ......+.+...+... -.+++++||||+++..
T Consensus 98 ~~~I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 98 YEKIWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 8899999976432 1222333333333332 2457899999999764
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=3e-06 Score=86.10 Aligned_cols=96 Identities=14% Similarity=0.212 Sum_probs=76.1
Q ss_pred CCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCc-EEEecCCCCCCcCCC--CCCCCcccc
Q 039772 509 LFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLR-HLNFGSITLPAHPGK--YCGSLENLN 584 (608)
Q Consensus 509 L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~-~L~l~~~~~~~~~lP--~i~~L~~L~ 584 (608)
+.+|+.+++++|+++.+|+..|.++.+|+.|+|.++ +..+|+ .+.++.+|+ .|++.. . +..++ .|.++..|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~--l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S--VTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T--CCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c--ceEEchhhhhCCccCC
Confidence 678999999999999999987799999999999887 888877 789999999 999987 3 66676 788899999
Q ss_pred eeecc-CCC-cccchhcCCCCCCCCC
Q 039772 585 FISAL-HPC-CCTEDLLGRLPNLQNL 608 (608)
Q Consensus 585 ~l~~~-~~~-~~~~~~l~~L~~L~~L 608 (608)
.+++. +.- ......+.++++|+.|
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEEeCCCccCccchhhhcCCcchhhh
Confidence 99985 222 2223236677777753
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.18 E-value=7.6e-07 Score=92.18 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=106.8
Q ss_pred cceEEEEEecccccccccccc-------cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc-----CCc
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY-------DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ-----YPS 504 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~-------~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-----lp~ 504 (608)
..++.+.+..+.........+ .++|+.|.+.+|.... .........+++|+.|+|++|.+.. +..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~---~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP---AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH---HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH---HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 356778887777653222222 2689999999987641 1234455667899999999999863 222
Q ss_pred cc-CCCCCccEEEecCCCCCc-----CChHHHhcCccCcEEeccccccc-----cchhHhcccccCcEEEecCCCCCCc-
Q 039772 505 GI-ENLFLLRYLKLNIPSLKS-----LPSSLLSNLLNLYTLDMPFSYIE-----HTADEFWKMNKLRHLNFGSITLPAH- 572 (608)
Q Consensus 505 ~i-~~L~~Lr~L~l~~~~i~~-----LP~si~~~L~~L~~L~L~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~~~~- 572 (608)
.+ ....+|++|+|++|.|.. ++..+ ..+++|++|+|++|.+. .++..+...++|++|++++|.....
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 23 346789999999998854 66777 88999999999999775 4577888899999999999763211
Q ss_pred --CCC-CCCCCcccceeecc
Q 039772 573 --PGK-YCGSLENLNFISAL 589 (608)
Q Consensus 573 --~lP-~i~~L~~L~~l~~~ 589 (608)
.++ .+....+|+.++++
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLY 247 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECT
T ss_pred HHHHHHHHHhCCCCCEEecc
Confidence 122 33346889999998
No 160
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.18 E-value=5.4e-07 Score=99.34 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=84.5
Q ss_pred cceEEEEEecccccccccccc---cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCcc-----CCcccCC
Q 039772 437 KKVKRLNAVKRQEDFAYLDYY---DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQ-----YPSGIEN 508 (608)
Q Consensus 437 ~~~r~l~~~~~~~~~~~~~~~---~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-----lp~~i~~ 508 (608)
..+++|.+..+......+..+ +++|++|.+.+|..... ..++..+..+++|++|++++|.+.. ++.....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST--DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH--HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH--HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 357778887766543333333 68889998888743200 1244556688889999999888542 3333346
Q ss_pred CCCccEEEecCCC--CC--cCChHHHhcCccCcEEecccc-ccccchhHhcccccCcEEEecC
Q 039772 509 LFLLRYLKLNIPS--LK--SLPSSLLSNLLNLYTLDMPFS-YIEHTADEFWKMNKLRHLNFGS 566 (608)
Q Consensus 509 L~~Lr~L~l~~~~--i~--~LP~si~~~L~~L~~L~L~~~-~l~~lP~~i~~L~~L~~L~l~~ 566 (608)
+++|++|++++|. +. .++.-+ .++++|++|++++| .+..+|..+.++++|++|+++.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred CCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 6788888888875 21 233333 56788888888888 7777777777788888887554
No 161
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.16 E-value=4.8e-06 Score=82.69 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=43.6
Q ss_pred CCCCCCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
+.....+++|.+..++++.+.+... -...+-+.|+|.+|+||||||+++++ .....|
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~~ 79 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNATF 79 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE
Confidence 3445678999999999998887431 12345688999999999999999998 554443
No 162
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.11 E-value=4e-06 Score=77.10 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=39.7
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....++||+..++.+.+.+.... .+.+.|+|.+|+||||+|+++++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999997743 45678999999999999999988
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.98 E-value=1.8e-05 Score=81.68 Aligned_cols=138 Identities=13% Similarity=0.064 Sum_probs=74.5
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhC
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLM 203 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~ 203 (608)
...+++|++..++.+...+..+. ..+.+.|+|..|+||||+|+.+++. ....... ........ .. ...+...-.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~--l~~~~~~-~~~~~~~~-~~-~~~~~~~~~ 87 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGI-TATPCGVC-DN-CREIEQGRF 87 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHH--HSCTTCS-CSSCCSSS-HH-HHHHHTSCC
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHH--hCCCCCC-CCCCCccc-HH-HHHHhccCC
Confidence 44579999999999999997653 2357889999999999999999873 3211100 00000000 00 000000000
Q ss_pred CC----CCcccccccCHHHHHHHHHHH-hCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 204 PS----SRLSEIMDKNYEMKKIILHEY-LMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 204 ~~----~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.. .................+... ..+++.+||+||++.. ..++.+...+.....+..+|++|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 00 000000111222222221111 1346789999999653 5566676666555557788888876
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.97 E-value=4.3e-06 Score=84.28 Aligned_cols=121 Identities=11% Similarity=0.052 Sum_probs=74.3
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccc-ceeee-eeeEecccchHHHHHHHHH
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVK-HYFDC-HAWIPDISYADQILDIVIK 200 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~-~~wv~vs~~~~~l~~~il~ 200 (608)
....+++|++..++.+.+++..+. .+.+.++|.+|+||||+|+.+++ .+. ..+.. .+.++.+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~---------- 79 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDE---------- 79 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTST----------
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccc----------
Confidence 344679999999999998887654 33488999999999999999988 431 11111 222332211
Q ss_pred HhCCCCCcccccccCHHHHHHHHHHH--h-CCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 201 FLMPSSRLSEIMDKNYEMKKIILHEY--L-MTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
. ............... + .+++.+||+|+++.. +..+.+...+.....++++|+||..
T Consensus 80 -----~-----~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 141 (319)
T 2chq_A 80 -----R-----GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (319)
T ss_dssp -----T-----CTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESC
T ss_pred -----c-----ChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 0 000000111111111 1 256889999999754 4556676666665667888888877
No 165
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.93 E-value=7.2e-07 Score=98.31 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=90.1
Q ss_pred cccceEEeecCCCCCCCCCcchHHhh-ccccceeEeecCCCc-Ccc--CCcccCCCCCccEEEecCCCCCc-----CChH
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKIC-GMFKLLRVLDLGSLV-LIQ--YPSGIENLFLLRYLKLNIPSLKS-----LPSS 528 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~-~~~~~Lr~L~L~~~~-l~~--lp~~i~~L~~Lr~L~l~~~~i~~-----LP~s 528 (608)
+++|+.|.+.++... ......+ ..+++|+.|++++|. +.. ++..+..+++|++|++++|.+.. ++.-
T Consensus 104 ~~~L~~L~L~~~~~~----~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVT----DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp CTTCCEEEEESCBCC----HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCCCeEEeeCcEEc----HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 789999999988654 2333334 378999999999994 553 56666689999999999987653 3333
Q ss_pred HHhcCccCcEEeccccc--c--ccchhHhcccccCcEEEecCCCCCCcCCC-CCCCCcccceeecc
Q 039772 529 LLSNLLNLYTLDMPFSY--I--EHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 589 (608)
Q Consensus 529 i~~~L~~L~~L~L~~~~--l--~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~i~~L~~L~~l~~~ 589 (608)
. ..+++|++|++++|. + ..++.-+.++++|++|++++ |.....+| .+.++.+|+.++++
T Consensus 180 ~-~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 180 P-DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR-AVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp C-TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT-TSCHHHHHHHHHHCTTCSEEECS
T ss_pred h-hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC-CCcHHHHHHHHhcCCcceEcccc
Confidence 3 467899999999986 2 23444456679999999998 44444466 55556666666643
No 166
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.91 E-value=1.5e-05 Score=70.48 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=35.3
Q ss_pred CceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 127 DTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
+++|++..++++.+.+..-.....-|-|+|.+|.|||++|+++++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5799999999999888542212234679999999999999999983
No 167
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.89 E-value=4.2e-05 Score=74.67 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=37.1
Q ss_pred CCCCceechhhHHHHHHHHhc---CC-------CCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIE---GP-------PQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+++|.+..++.+.+++.. .. ...+-+.|+|.+|+|||++|+++++
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999988888766532 11 2345678999999999999999998
No 168
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.85 E-value=5e-05 Score=76.81 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHh
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFL 202 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l 202 (608)
....+++|.+..++.+.+++..+. ...++.+.|.+|+||||+|+++++ .+... .+.++.+..-
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~~~---~~~i~~~~~~----------- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVNAD---MMFVNGSDCK----------- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTTEE---EEEEETTTCC-----------
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCCC---EEEEcccccC-----------
Confidence 445789999999999999998654 246778888899999999999998 44322 3344433220
Q ss_pred CCCCCcccccccCHHHHHHHHHHHh-----CCCcEEEEEcCCCCHh---HHHHHhhhcCCCCCCcEEEEEccC
Q 039772 203 MPSSRLSEIMDKNYEMKKIILHEYL-----MTKRYLIVIEDVWTIG---VWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.+.....+.+.. .+++.+||+||++... ..+.+...+.....+.++|+||..
T Consensus 86 -------------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 86 -------------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp -------------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 111111111111 2367899999998643 445555444433346788888877
No 169
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.82 E-value=7.1e-05 Score=75.67 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=41.4
Q ss_pred CCCCceechhhHHHHHHHHhc----------CCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 124 KSRDTVGLDDRMEELLDLLIE----------GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
.-.+++|.+..++.+.+.+.. .....+-+.++|.+|.|||+||+++++ .....|
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~ 79 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF 79 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE
Confidence 456899999999999988731 112245688999999999999999999 544443
No 170
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.82 E-value=1.7e-05 Score=79.59 Aligned_cols=121 Identities=10% Similarity=0.113 Sum_probs=69.3
Q ss_pred CceechhhHHHHHHHHhcC-------------CCCceEEEEEcCCCcchHHHHHHHhcCccccce--eeeeeeEecccch
Q 039772 127 DTVGLDDRMEELLDLLIEG-------------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY--FDCHAWIPDISYA 191 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~ 191 (608)
+++|.+..++.+.+++... .....-+.|+|.+|+|||++|+++++ .+... ....-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~--~l~~~~~~~~~~~~~~~~~- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG--LLHRLGYVRKGHLVSVTRD- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH--HHHHTTSSSSCCEEEECGG-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCcCCCcEEEEcHH-
Confidence 5889999888888765421 22345789999999999999998887 43221 111123333221
Q ss_pred HHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCC-----------CHhHHHHHhhhcCCCCCCcE
Q 039772 192 DQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVW-----------TIGVWDVIREILPDNHNRSR 260 (608)
Q Consensus 192 ~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~-----------~~~~~~~l~~~~~~~~~gs~ 260 (608)
.+... ............+... +..+|++|+++ ..+....|...+.....+..
T Consensus 109 ---------~l~~~-----~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ---------DLVGQ-----YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp ---------GTCCS-----STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred ---------Hhhhh-----cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 11100 0111112222222222 34589999997 34455666665555555677
Q ss_pred EEEEccC
Q 039772 261 VLITLTQ 267 (608)
Q Consensus 261 IivTTR~ 267 (608)
||.||..
T Consensus 172 ~i~~~~~ 178 (309)
T 3syl_A 172 VILAGYA 178 (309)
T ss_dssp EEEEECH
T ss_pred EEEeCCh
Confidence 8888765
No 171
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.80 E-value=7.9e-05 Score=76.49 Aligned_cols=50 Identities=10% Similarity=0.077 Sum_probs=40.2
Q ss_pred CCCCCCceechhhHHHHHHHHhc----------CCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIE----------GPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.....+++|.+..++.+.+.+.. .....+-|.|+|.+|+|||++|+++++
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999888753 112356788999999999999999998
No 172
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=3.1e-05 Score=78.51 Aligned_cols=100 Identities=20% Similarity=0.148 Sum_probs=79.0
Q ss_pred ccccceeEeecCCCcCccCCc-ccCCCCCccEEEecCCCCCcCChHHHhcCccCc-EEeccccccccchh-HhcccccCc
Q 039772 484 GMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY-TLDMPFSYIEHTAD-EFWKMNKLR 560 (608)
Q Consensus 484 ~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~-~L~L~~~~l~~lP~-~i~~L~~L~ 560 (608)
..+++|+.++++++.+..+|+ .+..+.+|+.+++..+ ++.+|+..|.++.+|+ .+++.+ .+..+++ .+.++.+|+
T Consensus 223 ~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 223 DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 347888999999888888874 5778888999999886 8888887778888898 999987 6777764 788889999
Q ss_pred EEEecCCCCCCcCCC--CCCCCcccceee
Q 039772 561 HLNFGSITLPAHPGK--YCGSLENLNFIS 587 (608)
Q Consensus 561 ~L~l~~~~~~~~~lP--~i~~L~~L~~l~ 587 (608)
.|++++|. +..++ .+.++..|+.++
T Consensus 301 ~l~l~~n~--i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDK--ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSC--CCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCc--cCccchhhhcCCcchhhhc
Confidence 99987655 66666 566677777665
No 173
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.77 E-value=3.7e-05 Score=70.57 Aligned_cols=116 Identities=11% Similarity=0.129 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHhcCC-CCceEEEEEcCCCcchHHHHHHHhcCccccceee-eeeeEecccchHHHHHHHHHHhCCCCCcc
Q 039772 132 DDRMEELLDLLIEGP-PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFD-CHAWIPDISYADQILDIVIKFLMPSSRLS 209 (608)
Q Consensus 132 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~l~~~il~~l~~~~~~~ 209 (608)
...++.+.+++..-. ..-..+.|+|.+|.||||||+++++ ....... .+++++.. ++...+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~-- 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK--AIYEKKGIRGYFFDTK----DLIFRLKHLMDEGKD-- 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH--HHHHHSCCCCCEEEHH----HHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH--HHHHHcCCeEEEEEHH----HHHHHHHHHhcCchH--
Confidence 344444444444322 2246899999999999999999998 4431111 23445432 233333333221111
Q ss_pred cccccCHHHHHHHHHHHhCCCcEEEEEcCCCC--HhHHH--HHhhhcCC-CCCCcEEEEEccC
Q 039772 210 EIMDKNYEMKKIILHEYLMTKRYLIVIEDVWT--IGVWD--VIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 210 ~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~--~l~~~~~~-~~~gs~IivTTR~ 267 (608)
. ..... +. +.-+|||||++. .+.|. .+...+.. ...|..||+||..
T Consensus 92 --~-----~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 --T-----KFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp --S-----HHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred --H-----HHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0 12222 22 456899999973 23332 22222221 1246788999877
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.75 E-value=8.3e-05 Score=78.53 Aligned_cols=125 Identities=16% Similarity=0.141 Sum_probs=69.1
Q ss_pred CCCce-echhh--HHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHH
Q 039772 125 SRDTV-GLDDR--MEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKF 201 (608)
Q Consensus 125 ~~~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~ 201 (608)
..+|| |.... ...+......+.. ..-+.|+|.+|+||||||+++++ .+...|+..-++.++.. .+..++...
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~--~~~~~~~~~ 178 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE--KFLNDLVDS 178 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH--HHHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH--HHHHHHHHH
Confidence 34565 64433 2333333333332 56789999999999999999999 66555544323333222 223333333
Q ss_pred hCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCHh----HHHHHhhhcCC-CCCCcEEEEEccC
Q 039772 202 LMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTIG----VWDVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 202 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
+... . ...+...+..+.-+|++||++... .-+.+...+.. ...|..||+||..
T Consensus 179 ~~~~---------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 179 MKEG---------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHTT---------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHcc---------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3221 1 112333444467799999996431 22333333321 2347789999887
No 175
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.74 E-value=2.2e-05 Score=69.22 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=33.8
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
-+++|++..++++.+.+..-.....-|-|+|.+|.|||++|+++++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 46899999999988887642111233679999999999999999983
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.73 E-value=3.7e-05 Score=71.98 Aligned_cols=61 Identities=16% Similarity=0.043 Sum_probs=39.7
Q ss_pred CCCceechh----hHHHHHHHHhcCCCC--ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEec
Q 039772 125 SRDTVGLDD----RMEELLDLLIEGPPQ--LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPD 187 (608)
Q Consensus 125 ~~~~vGr~~----~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 187 (608)
..++++.+. .++.+.+++...... .+.+.|+|.+|+||||||+++++ ........++|++.
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 445666443 444555555544221 26789999999999999999998 55444344556654
No 177
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.72 E-value=1.6e-05 Score=73.50 Aligned_cols=109 Identities=10% Similarity=0.010 Sum_probs=53.9
Q ss_pred cccceEEeecCC-CCCCCCCcchHHhhccccceeEeecCCCcCc-----cCCcccCCCCCccEEEecCCCCCc-----CC
Q 039772 458 DSQLHSLLCCSP-ESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLKS-----LP 526 (608)
Q Consensus 458 ~~~LrsL~l~~~-~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~L~~Lr~L~l~~~~i~~-----LP 526 (608)
.+.|++|.+.++ ......-..+...+...++|+.|+|++|.+. .+...+.....|++|+|++|.|.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 445556666555 3321000112233444555666666666653 233334444556666666665542 34
Q ss_pred hHHHhcCccCcEEec--ccccccc-----chhHhcccccCcEEEecCC
Q 039772 527 SSLLSNLLNLYTLDM--PFSYIEH-----TADEFWKMNKLRHLNFGSI 567 (608)
Q Consensus 527 ~si~~~L~~L~~L~L--~~~~l~~-----lP~~i~~L~~L~~L~l~~~ 567 (608)
..+ ...++|++|+| ++|.+.. +.+.+...++|++|++++|
T Consensus 115 ~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 115 EAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 444 55556666666 5554432 4444555556666666553
No 178
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.71 E-value=5.2e-05 Score=76.56 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=39.2
Q ss_pred CCCCceechhhHHHHHHHHhcC---CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+++|++..++.+...+... ......+.|+|.+|+||||+|+++++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999998887631 12345688999999999999999998
No 179
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=5.1e-05 Score=77.59 Aligned_cols=134 Identities=10% Similarity=0.061 Sum_probs=74.2
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc--eeee-eeeEecccc-hHHHHHH
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH--YFDC-HAWIPDISY-ADQILDI 197 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~-~~wv~vs~~-~~~l~~~ 197 (608)
+....+++|++..++.+...+..+. ...+.++|.+|+||||+|+.+++ .+.. .+.. ...+..+.. -.....+
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK--ELYGPDLMKSRILELNASDERGISIVRE 108 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH--HHHHHHHHTTSEEEECSSSCCCHHHHTT
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHH--HhCCCcccccceEEEccccccchHHHHH
Confidence 3445689999999999999987764 22388999999999999999998 4321 1211 222333322 1111111
Q ss_pred HHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 198 VIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 198 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.+..+..... ...... .....-.+++-+|++|++... ...+.+...+.......++|++|..
T Consensus 109 ~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 109 KVKNFARLTV---SKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp HHHHHHHSCC---CCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred HHHHHhhhcc---cccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 1111111000 000000 000111235679999998643 3445555555444456788888766
No 180
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.69 E-value=0.00038 Score=70.22 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=38.4
Q ss_pred CCCCceechhhHHHHHHHHhcC----------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.-.+++|.+..++.+.+.+... ....+-|.++|++|+|||+||+++++
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 4468999999999988876421 12246788999999999999999998
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.00013 Score=74.69 Aligned_cols=48 Identities=8% Similarity=-0.037 Sum_probs=38.1
Q ss_pred CCCCCCceechhhHHHHHHHH-hcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLL-IEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|.+...+.+.+++ ..+. ... +.|+|..|+||||+|+.++.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 334567999999999888887 4433 233 89999999999999998877
No 182
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.67 E-value=1.8e-05 Score=76.07 Aligned_cols=62 Identities=8% Similarity=0.006 Sum_probs=40.5
Q ss_pred CCCCCceech---hhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecc
Q 039772 123 SKSRDTVGLD---DRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDI 188 (608)
Q Consensus 123 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 188 (608)
....+++|.+ ..++.+..+...+ ..+.+.|+|.+|+||||+|+++++ ........+.|++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLG 89 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence 3456778743 4455555555543 356788999999999999999998 444333345566544
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.64 E-value=0.00016 Score=74.04 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCCCCceechhhHHHHHHHHhcC----------CCCceEEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
....+++|.+..++.+.+.+... ....+-|.++|++|+|||+||+++++ .....
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~ 111 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST 111 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCC
Confidence 34567999999999998877321 11234578999999999999999999 55433
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.63 E-value=9.2e-05 Score=78.19 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=42.8
Q ss_pred CCCCCceechhhH---HHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 123 SKSRDTVGLDDRM---EELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 123 ~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
....++||.+..+ ..+...+..+. ...+.++|.+|+||||+|+.+++ .....|
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~--~~~~~f 78 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR--YANADV 78 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH--HTTCEE
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH--HhCCCe
Confidence 3456899998888 67777777765 57789999999999999999999 555544
No 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=8.7e-05 Score=76.16 Aligned_cols=127 Identities=15% Similarity=0.041 Sum_probs=78.8
Q ss_pred CcceEEEEEecccccccccccc-cccceEEeecCCCCCCCCCcchHHhh--ccccceeEeecCCC--c------CccCCc
Q 039772 436 PKKVKRLNAVKRQEDFAYLDYY-DSQLHSLLCCSPESRHFDPMDWEKIC--GMFKLLRVLDLGSL--V------LIQYPS 504 (608)
Q Consensus 436 ~~~~r~l~~~~~~~~~~~~~~~-~~~LrsL~l~~~~~~~~~~~~~~~~~--~~~~~Lr~L~L~~~--~------l~~lp~ 504 (608)
.+.++.|.+..+... .+... .++|+.|.+..+... ...-..+ ..+++|+.|+|+.+ . +..+..
T Consensus 171 ~P~L~~L~L~g~~~l--~l~~~~~~~L~~L~L~~~~l~----~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL--SIGKKPRPNLKSLEIISGGLP----DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp CTTCCEEEEECCBTC--BCCSCBCTTCSEEEEECSBCC----HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred CCCCcEEEEeCCCCc--eeccccCCCCcEEEEecCCCC----hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 346777888665211 12224 778888888766543 1111222 36788888887531 1 222222
Q ss_pred cc--CCCCCccEEEecCCCCC-cCChHHH--hcCccCcEEecccccccc-----chhHhcccccCcEEEecCCC
Q 039772 505 GI--ENLFLLRYLKLNIPSLK-SLPSSLL--SNLLNLYTLDMPFSYIEH-----TADEFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 505 ~i--~~L~~Lr~L~l~~~~i~-~LP~si~--~~L~~L~~L~L~~~~l~~-----lP~~i~~L~~L~~L~l~~~~ 568 (608)
.+ ..+++|++|+|++|.+. ..+..++ ..+++|++|+|+.|.+.. ++..+.++++|+.|+++.|+
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 22 34678999999888775 2344441 246788999998887654 56666788889999988754
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.60 E-value=0.00027 Score=70.40 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=42.4
Q ss_pred CCCCCCceechhhHHHHHHHHhcC----------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
.....+++|.+..++.+.+.+... ....+-+.|+|++|+||||+|+++++ .....|
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~~~~~ 82 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--ECSATF 82 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HTTCEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe
Confidence 344568999999999998887431 11246789999999999999999998 444333
No 187
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=5e-05 Score=74.15 Aligned_cols=81 Identities=21% Similarity=0.057 Sum_probs=56.5
Q ss_pred hccccceeEeecCCCcCccC---CcccCCCCCccEEEecCCCCCcCChHHHhcCc--cCcEEeccccccc-cch------
Q 039772 483 CGMFKLLRVLDLGSLVLIQY---PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLL--NLYTLDMPFSYIE-HTA------ 550 (608)
Q Consensus 483 ~~~~~~Lr~L~L~~~~l~~l---p~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~--~L~~L~L~~~~l~-~lP------ 550 (608)
...++.|+.|+|++|.+..+ |..+..+++|++|+|++|.|..+. .+ ..+. +|++|+|++|.+. .+|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-EL-DKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GG-GGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hh-hhcccCCcceEEccCCcCccccCcchhHH
Confidence 35677888888888887643 455667888888888888887763 35 5555 8888888888654 344
Q ss_pred -hHhcccccCcEEEec
Q 039772 551 -DEFWKMNKLRHLNFG 565 (608)
Q Consensus 551 -~~i~~L~~L~~L~l~ 565 (608)
..+..+++|+.|+-.
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 236677888777543
No 188
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.57 E-value=0.00051 Score=68.62 Aligned_cols=51 Identities=25% Similarity=0.188 Sum_probs=40.3
Q ss_pred CCCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCcccc
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVK 176 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 176 (608)
.-.+++|.+..++++.+.+... -...+.+.++|.+|.||||||+++++ ...
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~ 74 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQ 74 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhC
Confidence 3457999999999998877531 12356789999999999999999999 544
No 189
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.57 E-value=0.00032 Score=72.82 Aligned_cols=49 Identities=20% Similarity=0.183 Sum_probs=39.4
Q ss_pred CCCCCceechhhHHHHHHHHhcC----------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....+++|.+..++.+...+... ....+-|.|+|.+|+|||+||+++++
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999887321 11246789999999999999999988
No 190
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.56 E-value=0.00022 Score=70.02 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=35.2
Q ss_pred CCceechhhHHHHHH-------HHhcC-CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLD-------LLIEG-PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~-------~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.+..++++.. .+... ....+-+.|+|.+|+|||++|+++++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 468888887777666 23221 33467788999999999999999999
No 191
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.56 E-value=8.9e-05 Score=67.24 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=51.8
Q ss_pred ceeEeecCCCcCc-cCCcccCCCCCccEEEecCC-CCCc-CChHHHhcC----ccCcEEecccc-ccccc-hhHhccccc
Q 039772 488 LLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIP-SLKS-LPSSLLSNL----LNLYTLDMPFS-YIEHT-ADEFWKMNK 558 (608)
Q Consensus 488 ~Lr~L~L~~~~l~-~lp~~i~~L~~Lr~L~l~~~-~i~~-LP~si~~~L----~~L~~L~L~~~-~l~~l-P~~i~~L~~ 558 (608)
.|+.||+++|.++ .-...+..+++|+.|+|++| .|+. -=..+ +.+ ++|+.|+|++| ++..- =..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 5777788877765 22345667788888888887 4541 11234 554 36888888888 56531 124667888
Q ss_pred CcEEEecCCCC
Q 039772 559 LRHLNFGSITL 569 (608)
Q Consensus 559 L~~L~l~~~~~ 569 (608)
|++|++++ |.
T Consensus 141 L~~L~L~~-c~ 150 (176)
T 3e4g_A 141 LKYLFLSD-LP 150 (176)
T ss_dssp CCEEEEES-CT
T ss_pred CCEEECCC-CC
Confidence 88888888 53
No 192
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=3.5e-05 Score=71.14 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=84.8
Q ss_pred chHHhhccccceeEeecCCC-cCc-----cCCcccCCCCCccEEEecCCCCCc-----CChHHHhcCccCcEEecccccc
Q 039772 478 DWEKICGMFKLLRVLDLGSL-VLI-----QYPSGIENLFLLRYLKLNIPSLKS-----LPSSLLSNLLNLYTLDMPFSYI 546 (608)
Q Consensus 478 ~~~~~~~~~~~Lr~L~L~~~-~l~-----~lp~~i~~L~~Lr~L~l~~~~i~~-----LP~si~~~L~~L~~L~L~~~~l 546 (608)
.+...+...+.|+.|+|++| .+. .+...+....+|++|+|++|.|.. +...+ ...++|++|+|++|.+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcC
Confidence 34567788899999999999 765 456677778899999999998853 55666 7778999999999977
Q ss_pred cc-----chhHhcccccCcEEEe--cCCCCCCcC---CC-CCCCCcccceeecc
Q 039772 547 EH-----TADEFWKMNKLRHLNF--GSITLPAHP---GK-YCGSLENLNFISAL 589 (608)
Q Consensus 547 ~~-----lP~~i~~L~~L~~L~l--~~~~~~~~~---lP-~i~~L~~L~~l~~~ 589 (608)
.. +...+...++|++|++ ++|...-.. +. .+...++|+.++++
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 64 6778888999999999 665532111 12 22235788888887
No 193
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.54 E-value=0.00024 Score=72.23 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=42.9
Q ss_pred CCCCceechhhHHHHHHHHhcC---CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
...+++|++..++.+..++... ......|.|+|.+|+|||++|+++++ +....|
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~ 83 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI 83 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe
Confidence 4568999999999999988652 23355688999999999999999988 544443
No 194
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.53 E-value=0.00063 Score=69.90 Aligned_cols=47 Identities=28% Similarity=0.232 Sum_probs=37.5
Q ss_pred CCCceechhhHHHH---HHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEEL---LDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l---~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++||++..++.+ ...+..+....+.+.|+|++|+|||++|+++++
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999987764 444555443346889999999999999999998
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.50 E-value=0.00034 Score=73.89 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=39.7
Q ss_pred CCCCCCceechhhHHHHHHHHhcC----------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.....+++|.+..++.+.+.+... ....+-|.++|++|+|||+||+++++
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344568999999999998877320 12346788999999999999999999
No 196
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.50 E-value=0.00038 Score=67.67 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=36.5
Q ss_pred CCCCCceechhhHHHHHHHHhc---C-------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 123 SKSRDTVGLDDRMEELLDLLIE---G-------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....+++|.+..++++.+.+.. . ....+-+.|+|.+|.||||+|+++++
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4456899999888877665432 1 01234488999999999999999998
No 197
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=0.00023 Score=76.86 Aligned_cols=133 Identities=13% Similarity=0.158 Sum_probs=73.6
Q ss_pred CCCCCCceechhhHHHHHHHHhcC---------------CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEe
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEG---------------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIP 186 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 186 (608)
+....+++|++..++++.+++... ....+.+.|+|++|+||||+|+++++ ... ++ .+.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~--~l~--~~-~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ--ELG--YD-ILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH--HTT--CE-EEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH--HcC--CC-EEEEe
Confidence 344568999999999999998751 01347899999999999999999999 442 22 33444
Q ss_pred cccc-hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH-----hHHHHHhhhcCCCCCCcE
Q 039772 187 DISY-ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI-----GVWDVIREILPDNHNRSR 260 (608)
Q Consensus 187 vs~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~ 260 (608)
.+.. ...+....+............ ...... .....+++.+||+|+++.. ..+..+...+.. .+..
T Consensus 110 ~s~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~ 181 (516)
T 1sxj_A 110 ASDVRSKTLLNAGVKNALDNMSVVGY-FKHNEE-----AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTP 181 (516)
T ss_dssp TTSCCCHHHHHHTGGGGTTBCCSTTT-TTC---------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSC
T ss_pred CCCcchHHHHHHHHHHHhccccHHHH-Hhhhhh-----hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCC
Confidence 4443 333333333322211110000 000000 0012357889999999643 123444433322 2344
Q ss_pred EEEEccC
Q 039772 261 VLITLTQ 267 (608)
Q Consensus 261 IivTTR~ 267 (608)
||+++.+
T Consensus 182 iIli~~~ 188 (516)
T 1sxj_A 182 LILICNE 188 (516)
T ss_dssp EEEEESC
T ss_pred EEEEEcC
Confidence 6666554
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.44 E-value=0.00021 Score=72.24 Aligned_cols=124 Identities=13% Similarity=0.102 Sum_probs=63.7
Q ss_pred CCCCce-echh--hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHH
Q 039772 124 KSRDTV-GLDD--RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIK 200 (608)
Q Consensus 124 ~~~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~ 200 (608)
...+|| |... ....+...+..+......+.|+|++|+||||||+.+++ .....-...++++.. .+...+..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~~~----~~~~~~~~ 82 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSAD----DFAQAMVE 82 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEHH----HHHHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEHH----HHHHHHHH
Confidence 345565 5332 33444444444432356788999999999999999998 443221123444432 22222222
Q ss_pred HhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCHh----HHHHHhhhcCC-CCCCcEEEEEccC
Q 039772 201 FLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTIG----VWDVIREILPD-NHNRSRVLITLTQ 267 (608)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IivTTR~ 267 (608)
.+... .... +...+. +..+|++||+.... ..+.+...+.. ...|..||+||..
T Consensus 83 ~~~~~---------~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 83 HLKKG---------TINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHHHT---------CHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHcC---------cHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 22110 1111 122222 36689999996532 12233333221 1236678888876
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00028 Score=71.78 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=38.6
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..-.+++|.+..++.+...+..+. +..+.++|+.|+||||+|+.+++
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 344568899888888888887764 33389999999999999999988
No 200
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.39 E-value=7.2e-05 Score=76.77 Aligned_cols=125 Identities=17% Similarity=0.064 Sum_probs=56.6
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCc-cCCcccC--CCCCccEEEecCC--------CCCcCC
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLI-QYPSGIE--NLFLLRYLKLNIP--------SLKSLP 526 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~--~L~~Lr~L~l~~~--------~i~~LP 526 (608)
+++|++|.+.++... ... . + .+++|+.|++..|.+. .....++ .+++|++|+|+.+ .+..+.
T Consensus 171 ~P~L~~L~L~g~~~l----~l~-~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL----SIG-K-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp CTTCCEEEEECCBTC----BCC-S-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred CCCCcEEEEeCCCCc----eec-c-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 456666666554221 111 1 1 2556666666655543 1112222 4566666665421 121222
Q ss_pred hHHH-hcCccCcEEecccccccc-chhHh---cccccCcEEEecCCCCCCc---CCC-CCCCCcccceeecc
Q 039772 527 SSLL-SNLLNLYTLDMPFSYIEH-TADEF---WKMNKLRHLNFGSITLPAH---PGK-YCGSLENLNFISAL 589 (608)
Q Consensus 527 ~si~-~~L~~L~~L~L~~~~l~~-lP~~i---~~L~~L~~L~l~~~~~~~~---~lP-~i~~L~~L~~l~~~ 589 (608)
+.+. +.+++|++|+|++|.+.. .+..+ ..+++|++|+++.|...-. .++ ++.++.+|+.++++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 2120 135666666666664431 22222 2456666676666432110 123 33445666666665
No 201
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.34 E-value=0.00029 Score=68.92 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=34.0
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.+++|.+..+.++.+.+..-.....-|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999888777542112245779999999999999999983
No 202
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.30 E-value=0.00023 Score=71.34 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=37.5
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.+..++.+...+... ......+.++|.+|+||||+|+.+++
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 36889999998888887653 11235799999999999999999998
No 203
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00012 Score=71.56 Aligned_cols=76 Identities=24% Similarity=0.156 Sum_probs=57.5
Q ss_pred eecCCCcCccCCcc----cCCCCCccEEEecCCCCCcCC---hHHHhcCccCcEEeccccccccchhHhcccc--cCcEE
Q 039772 492 LDLGSLVLIQYPSG----IENLFLLRYLKLNIPSLKSLP---SSLLSNLLNLYTLDMPFSYIEHTADEFWKMN--KLRHL 562 (608)
Q Consensus 492 L~L~~~~l~~lp~~----i~~L~~Lr~L~l~~~~i~~LP---~si~~~L~~L~~L~L~~~~l~~lP~~i~~L~--~L~~L 562 (608)
++++.+....++.. ..++++|+.|+|++|.|..++ ..+ +++++|++|+|++|.+..++ .+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSER-ELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCch-hhhhcccCCcceE
Confidence 45555543333321 246789999999999887654 666 89999999999999888874 366666 99999
Q ss_pred EecCCCC
Q 039772 563 NFGSITL 569 (608)
Q Consensus 563 ~l~~~~~ 569 (608)
++++|..
T Consensus 226 ~L~~Npl 232 (267)
T 3rw6_A 226 WLDGNSL 232 (267)
T ss_dssp ECTTSTT
T ss_pred EccCCcC
Confidence 9999763
No 204
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.19 E-value=0.00029 Score=62.37 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-..++|+|..|.|||||++.+++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 205
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.15 E-value=0.0012 Score=69.76 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=36.2
Q ss_pred CCCCceechhhHHHHHHHHhc---C-------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIE---G-------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+++|.++.++++.+.+.. . -.-.+-|.++|++|.||||||+++++
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 446799999988887766432 1 01123478999999999999999998
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.15 E-value=0.00071 Score=72.12 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=40.4
Q ss_pred CCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 125 SRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
..+++|.+..++++.+++... ....+-|.|+|.+|.|||++|+++++ +....
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~ 265 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF 265 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSE
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCC
Confidence 346899999999998887532 22345688999999999999999998 54333
No 207
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.11 E-value=0.0011 Score=69.06 Aligned_cols=97 Identities=8% Similarity=-0.021 Sum_probs=60.7
Q ss_pred cceeEeecCCCcCccC-CcccCCCCCccEEEecCCCCC-----cCChHHHhcCccCcEEeccccccccchh-HhcccccC
Q 039772 487 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLK-----SLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKL 559 (608)
Q Consensus 487 ~~Lr~L~L~~~~l~~l-p~~i~~L~~Lr~L~l~~~~i~-----~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L 559 (608)
.+|+.+.+. +.+..+ +..+..+.+|+.+.+.++.+. .++...|..+.+|+.++|.+ ++..++. .+.++.+|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 344444442 223333 244556777777777765443 56666557777777777764 4666665 67777888
Q ss_pred cEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 560 RHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 560 ~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
+.+.+..+ +..++ .+.++ .|+.+.+.
T Consensus 326 ~~l~lp~~---l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 326 TQLTIPAN---VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp CEEEECTT---CCEECTTSSSSS-CCCEEEEC
T ss_pred cEEEECcc---ccEEcHHhCCCC-CCCEEEEc
Confidence 88888653 45555 56667 77777776
No 208
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.10 E-value=0.00035 Score=69.85 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=37.0
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.+..+.++.+.+..-.....-|.|+|.+|.|||++|+++++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 4689999999999888865322234567999999999999999998
No 209
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.09 E-value=0.00099 Score=70.87 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=38.6
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|||+..++++...|.... ..-+.++|.+|+|||++|+.+++
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 4579999999999999997754 23457999999999999999998
No 210
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.0027 Score=63.31 Aligned_cols=116 Identities=11% Similarity=0.032 Sum_probs=69.4
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCc-cccceeeeeeeEeccc-c-hHHHHHHHHHHhCCCC
Q 039772 130 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSS-YVKHYFDCHAWIPDIS-Y-ADQILDIVIKFLMPSS 206 (608)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~wv~vs~-~-~~~l~~~il~~l~~~~ 206 (608)
|-++.++.+.+.+..+. .+..-++|+.|.||||+|+.+.+.- .....++...++..+. . -.+-.+++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcc
Confidence 34556677777777665 6789999999999999999998720 1111122234444332 1 1111223333332110
Q ss_pred CcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 207 RLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
..+++-++|+|+++.. +..+.|...+-...+.+.+|++|.+
T Consensus 79 --------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 79 --------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp --------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred --------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 1245678999999743 5667777666655567888888876
No 211
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.06 E-value=0.0036 Score=63.39 Aligned_cols=112 Identities=10% Similarity=0.067 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee---------------------eeeeeEecccc
Q 039772 132 DDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF---------------------DCHAWIPDISY 190 (608)
Q Consensus 132 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---------------------~~~~wv~vs~~ 190 (608)
++..+.+.+.+..+. -.+.+.++|..|+||||+|+.+.+ .+.... +...++....
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~--~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR--YLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK- 83 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH--HHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT-
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH--HHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc-
Confidence 344566666665543 345788999999999999999887 322111 0111222110
Q ss_pred hHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHh-----CCCcEEEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEE
Q 039772 191 ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL-----MTKRYLIVIEDVWTI--GVWDVIREILPDNHNRSRVLI 263 (608)
Q Consensus 191 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iiv 263 (608)
. ......++..+ +.+.+ .+++-++|+|+++.. +..+.|...+-...+++.+|+
T Consensus 84 ----------------~---~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 84 ----------------G---KNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp ----------------T---CSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred ----------------c---CCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 01122222222 22222 246788999999753 456667666665556788888
Q ss_pred EccC
Q 039772 264 TLTQ 267 (608)
Q Consensus 264 TTR~ 267 (608)
+|.+
T Consensus 144 ~t~~ 147 (334)
T 1a5t_A 144 ATRE 147 (334)
T ss_dssp EESC
T ss_pred EeCC
Confidence 8877
No 212
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.04 E-value=0.00016 Score=70.79 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=37.1
Q ss_pred CCCCCceechhhHHHHHHHHhc----------CCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 123 SKSRDTVGLDDRMEELLDLLIE----------GPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....+++|.+..++.+.+.+.. +....+-+.|+|.+|+|||++|+++++
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999888877641 111123377999999999999999998
No 213
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.03 E-value=0.0018 Score=67.38 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=71.0
Q ss_pred cceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEE
Q 039772 460 QLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTL 539 (608)
Q Consensus 460 ~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L 539 (608)
+|+++.+...-. .+....|..+.+|+.++++++.+..+|...-...+|+.+.+.. .++.++...|.++.+|+.+
T Consensus 158 ~L~~i~lp~~l~-----~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 158 TVQEIVFPSTLE-----QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCEEECCTTCC-----EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCE
T ss_pred CceEEEeCCCcc-----EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEE
Confidence 466666554211 2444567777777777777777666665444456666666653 3555655554556666666
Q ss_pred ecccc---------------------ccccchh-HhcccccCcEEEecCCCCC---CcCCC--CCCCCcccceeecc
Q 039772 540 DMPFS---------------------YIEHTAD-EFWKMNKLRHLNFGSITLP---AHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 540 ~L~~~---------------------~l~~lP~-~i~~L~~L~~L~l~~~~~~---~~~lP--~i~~L~~L~~l~~~ 589 (608)
++..+ .+..++. .+.++.+|+.+.+.++... ...++ .+..+..|+.+.+.
T Consensus 232 ~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 232 EIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 65432 2334433 5566677777777664321 11244 45556677777766
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.01 E-value=0.0011 Score=76.09 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=38.8
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...++||+.+++++...|.... .+-+.++|.+|+||||+|+.+++
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999997754 23467999999999999999998
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.98 E-value=0.0023 Score=60.19 Aligned_cols=84 Identities=10% Similarity=-0.043 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc--hHHHHHHHHHHhCC-----------CCCcccccccC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY--ADQILDIVIKFLMP-----------SSRLSEIMDKN 215 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~l~~~il~~l~~-----------~~~~~~~~~~~ 215 (608)
-.++.|+|.+|+||||||..++. . .-..++|++.... ..++. .+....+. ... .....
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 90 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTP---SDFKE 90 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECC---TTTSH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEec---CCHHH
Confidence 46899999999999999999987 1 1235778876552 22222 22222211 110 11112
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCC
Q 039772 216 YEMKKIILHEYLMTKRYLIVIEDVWT 241 (608)
Q Consensus 216 ~~~~~~~l~~~L~~kr~LlVLDdv~~ 241 (608)
..+....++..+..+.-+||+|.+-.
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 23445555555554577999998753
No 216
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.94 E-value=0.00043 Score=69.36 Aligned_cols=53 Identities=9% Similarity=0.145 Sum_probs=34.6
Q ss_pred hhHHHHHHHHhcCCC-CceEEEEEcCCCcchHHHHHHHhcCcccc-ceeeeeeeEec
Q 039772 133 DRMEELLDLLIEGPP-QLSVVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWIPD 187 (608)
Q Consensus 133 ~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v 187 (608)
...+.+.+++..... ...-+.|+|.+|+|||+||+++++ ... ..-..+.++++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 344455566654322 246788999999999999999999 444 33233455553
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.85 E-value=0.0072 Score=68.40 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=39.4
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....++||+..++++.+.|.... ..-+.++|.+|+||||+|+.+++
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 34579999999999999997754 34567999999999999999988
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0028 Score=66.08 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=41.8
Q ss_pred CCCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
.-.++.|.++.+++|.+.+.-+ -...+=|.++|++|.|||+||+++++ .....|
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~ 243 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF 243 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE
Confidence 3567899999999988876431 12356788999999999999999999 555444
No 219
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.85 E-value=0.00066 Score=61.48 Aligned_cols=85 Identities=7% Similarity=-0.041 Sum_probs=61.2
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCc-Cc-cCCcccCCC----CCccEEEecCC-CCC--cCChH
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLV-LI-QYPSGIENL----FLLRYLKLNIP-SLK--SLPSS 528 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~-~lp~~i~~L----~~Lr~L~l~~~-~i~--~LP~s 528 (608)
--+|+.|.+.++... ..--..+..+++|+.|+|++|. ++ .--..+..+ ++|++|+|++| +|+ .+ ..
T Consensus 60 ~~~L~~LDLs~~~It----d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~ 134 (176)
T 3e4g_A 60 KYKIQAIDATDSCIM----SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IA 134 (176)
T ss_dssp CCCEEEEEEESCCCC----GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HH
T ss_pred CceEeEEeCcCCCcc----HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HH
Confidence 346888888888754 2333456789999999999996 55 222344444 47999999997 576 24 34
Q ss_pred HHhcCccCcEEecccc-cccc
Q 039772 529 LLSNLLNLYTLDMPFS-YIEH 548 (608)
Q Consensus 529 i~~~L~~L~~L~L~~~-~l~~ 548 (608)
+ .++++|++|+|++| .+..
T Consensus 135 L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 L-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp G-GGCTTCCEEEEESCTTCCC
T ss_pred H-hcCCCCCEEECCCCCCCCc
Confidence 7 88999999999999 6664
No 220
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.84 E-value=0.00091 Score=66.44 Aligned_cols=69 Identities=10% Similarity=0.019 Sum_probs=46.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEec--ccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPD--ISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 226 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 226 (608)
-+++.|+|++|+||||||.+++. . .-..+.|++. .+.+ . ....+.+.....+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~--~---~G~~VlyIs~~~eE~v-----------~-------~~~~~le~~l~~i~~~ 179 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE--A---LGGKDKYATVRFGEPL-----------S-------GYNTDFNVFVDDIARA 179 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH--H---HHTTSCCEEEEBSCSS-----------T-------TCBCCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH--h---CCCCEEEEEecchhhh-----------h-------hhhcCHHHHHHHHHHH
Confidence 35678999999999999999988 3 2223567776 2110 0 0113456666667777
Q ss_pred hCCCcEEEEEcCCCC
Q 039772 227 LMTKRYLIVIEDVWT 241 (608)
Q Consensus 227 L~~kr~LlVLDdv~~ 241 (608)
+...+ +||+|++..
T Consensus 180 l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 180 MLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHCS-EEEEECCTT
T ss_pred HhhCC-EEEEecccc
Confidence 76666 999999954
No 221
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.83 E-value=0.0018 Score=64.31 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCcccc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVK 176 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 176 (608)
..+.+.++|++|+|||+||+++++ ...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~--~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR--KMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH--HHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhC
Confidence 456788999999999999999999 553
No 222
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0024 Score=65.60 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=41.4
Q ss_pred CCCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
.-.++.|.++.+++|.+.+.-+ -...+=|-++|++|.|||.||+++++ +....|
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 3467899999999998775431 12345688999999999999999999 555554
No 223
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0029 Score=65.98 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=41.3
Q ss_pred CCCceechhhHHHHHHHHhc-----------CCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 125 SRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
-.++.|.++.+++|.+.+.- +-...+=|.++|++|.|||+||+++++ +....|
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f 271 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF 271 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence 45799999999999876432 113456788999999999999999999 655554
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0037 Score=65.02 Aligned_cols=54 Identities=24% Similarity=0.217 Sum_probs=41.7
Q ss_pred CCCCceechhhHHHHHHHHhc-----------CCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 124 KSRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
...++.|.++.+++|.+.+.. +-...+=|.++|++|.|||+||+++++ .....|
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~ 234 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF 234 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe
Confidence 346789999999999887642 112356688999999999999999999 555554
No 225
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=96.70 E-value=0.0026 Score=53.28 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcc--ccccchHHHHHHHHHHHHch---hhhHHHHHH
Q 039772 5 FRLFSERLGRVLAGEEVTLSDAAKQ--PIQNLHAEVEIVTSWLSEFE---YDISYILLQ 58 (608)
Q Consensus 5 ~~~~l~kL~~~l~~~~~~l~~a~~~--~i~~~~~el~~v~~wL~~l~---y~~~d~l~~ 58 (608)
+..-+++|+.-|..++++|.+|+++ +..+ +.++.|+++++ ||++|++..
T Consensus 24 v~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d-----~~vk~W~~~vrdlaYD~ED~iD~ 77 (115)
T 3qfl_A 24 VKKNIEDLGKELESMNAALIKIGEVPREQLD-----SQDKLWADEVRELSYVIEDVVDK 77 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGCC-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999998 5566 88999999998 999999933
No 226
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0023 Score=66.70 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=41.7
Q ss_pred CCCCceechhhHHHHHHHHhc----C-------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 124 KSRDTVGLDDRMEELLDLLIE----G-------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
.-.++.|.++.+++|.+.+.. + -...+=|-++|++|.|||.||+++++ +....|
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 456899999999998876432 2 12356788999999999999999999 555544
No 227
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.58 E-value=0.0083 Score=63.83 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=37.4
Q ss_pred CCCCCCCceechhhHHHHHHHHhc---CC-------CCceEEEEEcCCCcchHHHHHHHhc
Q 039772 121 SSSKSRDTVGLDDRMEELLDLLIE---GP-------PQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.....+++|.++.++++.+.... .. .-.+=+.|+|.+|.||||||+++++
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 334567899999888877766432 10 0122389999999999999999998
No 228
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.58 E-value=0.0043 Score=58.79 Aligned_cols=115 Identities=15% Similarity=-0.016 Sum_probs=61.0
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcc-----c--------------
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLS-----E-------------- 210 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~-----~-------------- 210 (608)
.+++|+|.+|+|||||++.++. .....=..++|+........+...+. .++...... .
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQWS 100 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEESSSCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CTTB
T ss_pred CEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEEcccCHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCceee
Confidence 6899999999999999999986 23222123556654333333333322 332211000 0
Q ss_pred ccccCHHHHHHHHHHHhCC-C--cEEEEEcCCC-----CHhHHHHHhhhcCC--CCCCcEEEEEccC
Q 039772 211 IMDKNYEMKKIILHEYLMT-K--RYLIVIEDVW-----TIGVWDVIREILPD--NHNRSRVLITLTQ 267 (608)
Q Consensus 211 ~~~~~~~~~~~~l~~~L~~-k--r~LlVLDdv~-----~~~~~~~l~~~~~~--~~~gs~IivTTR~ 267 (608)
....+..+....+...+.. + ..+||+|..- +......+...+.. ...|..||+||..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 101 LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQY 167 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-
T ss_pred ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 0112455655555555532 3 3499999986 22222222222221 1247889999988
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.55 E-value=0.0015 Score=73.98 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=37.6
Q ss_pred CCceechhhHHHHHHHHhcCC-------CCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEGP-------PQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+++++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999988876421 1233689999999999999999998
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.55 E-value=0.0039 Score=70.54 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=38.8
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|||+..++++...|.... ..-+.++|.+|+|||++|+.+++
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 4579999999999999997754 23467999999999999999998
No 231
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0059 Score=63.01 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=42.2
Q ss_pred CCCCCceechhhHHHHHHHHhc----C-------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 123 SKSRDTVGLDDRMEELLDLLIE----G-------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
..-.++.|.++.+++|.+.+.- . -.-.+=|-++|++|.|||.||+++++ +....|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 3456789999999999887542 1 12356688999999999999999999 555554
No 232
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.44 E-value=0.0043 Score=65.72 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=37.0
Q ss_pred CCCCceechhhHHHHHHHH---hcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLL---IEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+++|.+..++.+..++ ..+....+-+.++|++|.|||++|+++++
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 3478999999888665544 33332345688999999999999999999
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.41 E-value=0.0056 Score=68.70 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCCceechhhHHHHHHHHhc----CC-------CCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHH
Q 039772 125 SRDTVGLDDRMEELLDLLIE----GP-------PQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQ 193 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~----~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 193 (608)
..++.|.++.+++|.+.+.- ++ ...+=|.++|++|.|||+||+++++ +...+| +.++.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH-----
Confidence 35688999999888877532 21 2356788999999999999999999 555544 223211
Q ss_pred HHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 039772 194 ILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWT 241 (608)
Q Consensus 194 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 241 (608)
++. .. ....+...+.......-...+.+|++|+++.
T Consensus 273 ---~l~----sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 273 ---EIM----SK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp ---HHH----SS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred ---Hhh----cc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 011 00 0111222333333344456789999999963
No 234
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.35 E-value=0.004 Score=60.22 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=34.3
Q ss_pred CCCCceechhhHHHHHHHHhc--C-------C-CCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIE--G-------P-PQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+++|.+..+.++.++... . + .-.+=+.|+|.+|.||||||+++++
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 445789988777777655431 1 0 0112289999999999999999998
No 235
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.28 E-value=0.0034 Score=57.69 Aligned_cols=116 Identities=10% Similarity=-0.032 Sum_probs=59.4
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc-----hHHHHHHHHHH---hC--CCCCccc--ccccCHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY-----ADQILDIVIKF---LM--PSSRLSE--IMDKNYE 217 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~l~~~il~~---l~--~~~~~~~--~~~~~~~ 217 (608)
..|-|++..|-||||.|-...- +...+=-.++++...+. ...++..+.-. .+ .....+. .+.....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566777777999999977766 33333222334432211 34444433100 00 0000000 0011223
Q ss_pred HHHHHHHHHhCCCcE-EEEEcCCCCH-----hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 218 MKKIILHEYLMTKRY-LIVIEDVWTI-----GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 218 ~~~~~l~~~L~~kr~-LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.....+++.+.+.+| |||||++... -..+.+...+........||+|+|.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC
Confidence 445566777766554 9999998432 2233444444444446789999999
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.25 E-value=0.0045 Score=60.82 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=35.3
Q ss_pred CCCCCceechhhHHHHHHHHhcC---------C-CCceEEEEEcCCCcchHHHHHHHhc
Q 039772 123 SKSRDTVGLDDRMEELLDLLIEG---------P-PQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~~~---------~-~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
....+++|.+..++++.++...- + .-.+=+.|+|.+|.||||||++++.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 44567899888877776654321 0 0112289999999999999999998
No 237
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.20 E-value=0.0063 Score=52.27 Aligned_cols=54 Identities=26% Similarity=0.258 Sum_probs=45.1
Q ss_pred EeecCCCcCc--cCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEecccccc
Q 039772 491 VLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYI 546 (608)
Q Consensus 491 ~L~L~~~~l~--~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l 546 (608)
.++.++..++ .+|..+. .+|++|+|++|.|+.||..+|..+.+|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 6777888887 8886654 4789999999999999998778899999999998744
No 238
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.18 E-value=0.01 Score=58.10 Aligned_cols=47 Identities=26% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCCCceechhhHHHHHHHHhcC------------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.-.++.|.++.++++.+.+... ..... +.++|++|.||||||++++.
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 3457888888888887654211 11122 99999999999999999998
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.18 E-value=0.0054 Score=69.65 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=41.5
Q ss_pred CCCceechhhHHHHHHHHhc-----------CCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 125 SRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
..+++|.+..++++.+++.. .-....-|.|+|.+|+||||||+++++ .....|
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~ 266 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF 266 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE
Confidence 45799999999999888753 112345789999999999999999998 554444
No 240
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.16 E-value=0.0032 Score=63.78 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=37.8
Q ss_pred CCCCceechhhHHHHHHHHhcC---CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 124 KSRDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.-.+++|.+..++.+...+... ......+.++|++|+||||||+.+++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4457889888888877666542 22346799999999999999999999
No 241
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.04 E-value=0.0048 Score=57.69 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-+++|.+.+......-.+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555544333467999999999999999999987
No 242
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.03 E-value=0.019 Score=54.17 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|..|+|||||++.++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999976
No 243
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.96 E-value=0.011 Score=67.61 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=37.1
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.+..++.+...+... ......+.|+|..|+|||++|+.+++
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999988877542 11235789999999999999999998
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.96 E-value=0.025 Score=61.19 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=38.2
Q ss_pred CCceechhhHHHHHHHHhc----CCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 126 RDTVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
.+++|.+...+.+.+.+.- ......++.++|.+|+||||||+.++. .....|
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~ 136 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK--SLGRKF 136 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH--HHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCe
Confidence 3578888888777665432 122356899999999999999999998 554444
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.94 E-value=0.03 Score=55.57 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|+|.+|+||||++..++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 457999999999999999999887
No 246
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.94 E-value=0.0073 Score=56.12 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=32.7
Q ss_pred chhhHHHHHHHHhcC-CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 131 LDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 131 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
|++.++.+.+.+... .....+|+|.|..|.||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456677777777653 23467999999999999999999987
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.89 E-value=0.018 Score=54.87 Aligned_cols=92 Identities=9% Similarity=0.012 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccc----eeeeeeeEecccc--hHHHHHHHHHHhCCCC-----CcccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKH----YFDCHAWIPDISY--ADQILDIVIKFLMPSS-----RLSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~--~~~l~~~il~~l~~~~-----~~~~~~~~~~~ 217 (608)
-.++.|+|.+|+||||||..+........ .-..++|++.... ...+ ..++..++... ...-....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46899999999999999999887321211 1245788876553 2222 23334443211 00001112222
Q ss_pred H---HHHHHHHHhC-CCcEEEEEcCCCC
Q 039772 218 M---KKIILHEYLM-TKRYLIVIEDVWT 241 (608)
Q Consensus 218 ~---~~~~l~~~L~-~kr~LlVLDdv~~ 241 (608)
+ ....+.+.+. .+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2333555553 4677899998853
No 248
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.88 E-value=0.0039 Score=62.02 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=36.9
Q ss_pred CCceechhhHHHHHHHHhcC------------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.+..++.+...+... .....-+.++|.+|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998877541 11234577999999999999999998
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.88 E-value=0.0043 Score=58.60 Aligned_cols=111 Identities=11% Similarity=-0.103 Sum_probs=62.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM 228 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 228 (608)
-.++.|+|..|.||||+|..+.+ +...+-..++.+.-..+.+ -...+++.++...+. .......+..+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~r-~~~~i~srlG~~~~~--~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPS--VEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCGG-GCSSCCCCCCCSSCC--EEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCch-HHHHHHHhcCCCccc--cccCCHHHHHHHHHHHhh
Confidence 46888999999999999987777 4433322233332221111 112333444322111 122344556666666665
Q ss_pred CCcE-EEEEcCCCCH--hHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 229 TKRY-LIVIEDVWTI--GVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 229 ~kr~-LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
+.++ +||+|.+... ++.+.+....+ .|-.||+|-++
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~ 125 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLD 125 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCS
T ss_pred CCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecc
Confidence 5545 9999998632 44444433222 27889999986
No 250
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.73 E-value=0.0096 Score=60.40 Aligned_cols=100 Identities=21% Similarity=0.084 Sum_probs=58.8
Q ss_pred HHHHHHHh-cCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCC-cccccc
Q 039772 136 EELLDLLI-EGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSR-LSEIMD 213 (608)
Q Consensus 136 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~-~~~~~~ 213 (608)
..+-..|. .+=..-+++.|+|.+|+||||||.+++. .....=..++|++........ .++.++...+ ..-...
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~---ra~rlgv~~~~l~i~~~ 121 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV---YAKNLGVDLKSLLISQP 121 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH---HHHHHTCCGGGCEEECC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH---HHHHcCCchhhhhhhhc
Confidence 44555554 3322347999999999999999999987 333222236788755541111 3444443211 000234
Q ss_pred cCHHHHHHHHHHHhC-CCcEEEEEcCCC
Q 039772 214 KNYEMKKIILHEYLM-TKRYLIVIEDVW 240 (608)
Q Consensus 214 ~~~~~~~~~l~~~L~-~kr~LlVLDdv~ 240 (608)
.+.++....+...++ .+.-++|+|.+-
T Consensus 122 ~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 122 DHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp SSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred cCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 456666666666654 456689999874
No 251
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.73 E-value=0.016 Score=60.49 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccc-cceeeeeeeEecccc---hHHHHHHHHHH
Q 039772 137 ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYV-KHYFDCHAWIPDISY---ADQILDIVIKF 201 (608)
Q Consensus 137 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~---~~~l~~~il~~ 201 (608)
++++.|..-. .=+.++|.|..|+|||+|+..+.+ .+ +.+-+.++|+-+++. ..++.+++...
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3455554321 125799999999999999999887 33 233355777777776 77777777765
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.72 E-value=0.0051 Score=55.73 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999998
No 253
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.65 E-value=0.012 Score=59.82 Aligned_cols=51 Identities=16% Similarity=0.009 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee-ee-eeeEecccc
Q 039772 137 ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF-DC-HAWIPDISY 190 (608)
Q Consensus 137 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~-~~wv~vs~~ 190 (608)
++++.+..-. .-..++|+|..|.|||||++.+.+ .+.... +. ++++-+++.
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDER 215 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSC
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCC
Confidence 3444444322 135899999999999999999887 443222 21 345556655
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.64 E-value=0.0054 Score=55.09 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 255
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.63 E-value=0.022 Score=59.57 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=34.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCcccccee-eeeeeEecccc---hHHHHHHHHH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYF-DCHAWIPDISY---ADQILDIVIK 200 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~---~~~l~~~il~ 200 (608)
+.++|+|..|+||||||+.+.. .....+ +.++++-+++. ..++..++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHh--hhhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 3689999999999999999988 444333 33556666655 5566555543
No 256
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.61 E-value=0.023 Score=59.60 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=61.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccc-cceeeeeeeEecccc---hHHHHHHHHHHhCCC-------C
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYV-KHYFDCHAWIPDISY---ADQILDIVIKFLMPS-------S 206 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~---~~~l~~~il~~l~~~-------~ 206 (608)
+++.|..-. .=..++|.|..|+|||+|+..+.+ .+ +.+-+.++|+-+++. ..++.+++...=... .
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 445554321 124689999999999999999888 43 234466788877776 777777777542111 0
Q ss_pred --------CcccccccCHHHHHHHHHHHhC---CCcEEEEEcCCCC
Q 039772 207 --------RLSEIMDKNYEMKKIILHEYLM---TKRYLIVIEDVWT 241 (608)
Q Consensus 207 --------~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVLDdv~~ 241 (608)
+.|.....-.....-.+-++++ ++.+|+++||+-.
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1010011112222333445554 5899999999943
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.60 E-value=0.0058 Score=54.93 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=18.8
Q ss_pred eEEEEEcCCCcchHHHHHHH
Q 039772 150 SVVAILDSIGLDKTAFATEA 169 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v 169 (608)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.54 E-value=0.05 Score=50.24 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 259
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.53 E-value=0.013 Score=57.91 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=23.1
Q ss_pred CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 146 PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 146 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999998887
No 260
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.51 E-value=0.09 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+++++|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999998887
No 261
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.48 E-value=0.011 Score=60.56 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=35.5
Q ss_pred CceechhhHHHHHHHHh-------------cCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 127 DTVGLDDRMEELLDLLI-------------EGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++|.+..++.+...+. ......+.+.++|.+|+|||++|+++++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 47899999988888773 1111245688999999999999999998
No 262
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.46 E-value=0.056 Score=56.20 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.++|.+|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988886
No 263
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.39 E-value=0.074 Score=53.78 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=34.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc----eeeeeeeEecccc
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH----YFDCHAWIPDISY 190 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~ 190 (608)
+-.+|..+=..-.++.|+|.+|+||||||..++....... .-..++|++....
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3334433323357899999999999999998887322211 1235788887664
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.39 E-value=0.008 Score=55.09 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|++|.|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999988
No 265
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.35 E-value=0.021 Score=64.60 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=37.1
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 46899999998888877532 12234789999999999999999998
No 266
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.34 E-value=0.0076 Score=55.85 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 267
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.34 E-value=0.012 Score=59.21 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=39.3
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
..++|++..++.+...+..+. -+.++|.+|+|||+||+.+.+ .....|
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~--~~~~~~ 74 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK--TMDLDF 74 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH--HTTCCE
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH--HhCCCe
Confidence 478999999999988887653 477999999999999999998 554443
No 268
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.26 E-value=0.0086 Score=54.61 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 269
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.24 E-value=0.011 Score=59.51 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=35.4
Q ss_pred eechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 129 VGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 129 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
|+.+.-.+++.+.+... ......|.|+|++|.||||+|+.++. .....|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~--~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ--IINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH--HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH--HhCCCe
Confidence 45566677777776432 23466799999999999999999988 544444
No 270
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.23 E-value=0.033 Score=55.87 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccce----eeeeeeEecccc--hHHHHHHHHHHhCCCCC-----cccccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHY----FDCHAWIPDISY--ADQILDIVIKFLMPSSR-----LSEIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~--~~~l~~~il~~l~~~~~-----~~~~~~~~~~ 217 (608)
-.++.|+|.+|+||||||.+++........ -..++|++.... ..++. +++..++.... ..-....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999988763211111 235788887664 33333 33444433210 0000112222
Q ss_pred ---HHHHHHHHHhC--CCcEEEEEcCCC
Q 039772 218 ---MKKIILHEYLM--TKRYLIVIEDVW 240 (608)
Q Consensus 218 ---~~~~~l~~~L~--~kr~LlVLDdv~ 240 (608)
+....+...++ .+.-+||+|.+-
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 33445555553 456788899884
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.21 E-value=0.0076 Score=54.26 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|+|+|+.|.||||+|+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999988
No 272
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.20 E-value=0.1 Score=52.00 Aligned_cols=52 Identities=17% Similarity=0.029 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHh
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFL 202 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l 202 (608)
-.++.|.|.+|+||||||..++.+..... ..++|++......++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHHHHH
Confidence 36899999999999999988876322222 56888886655666666666553
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.20 E-value=0.0099 Score=53.75 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 274
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.17 E-value=0.031 Score=56.96 Aligned_cols=101 Identities=18% Similarity=0.056 Sum_probs=58.6
Q ss_pred HHHHHHHHh-cCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCC-ccccc
Q 039772 135 MEELLDLLI-EGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSR-LSEIM 212 (608)
Q Consensus 135 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~-~~~~~ 212 (608)
...+-.+|. .+=..-+++.|.|.+|+||||||.++.. .....-..++|++.......+ .++.++...+ ..-..
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~---~a~~~g~d~~~l~i~~ 133 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV---YARALGVNTDELLVSQ 133 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEEC
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH---HHHHcCCCHHHceeec
Confidence 344544554 2212346888999999999999988877 332222358888876651111 1344433211 00012
Q ss_pred ccCHHHHHHHHHHHhCC-CcEEEEEcCCC
Q 039772 213 DKNYEMKKIILHEYLMT-KRYLIVIEDVW 240 (608)
Q Consensus 213 ~~~~~~~~~~l~~~L~~-kr~LlVLDdv~ 240 (608)
..+.++....+....+. +--+||+|.+-
T Consensus 134 ~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 134 PDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp CSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred CCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 34566777777666654 45589999874
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.13 E-value=0.014 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+|+|+|+.|.||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 276
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.10 E-value=0.039 Score=55.95 Aligned_cols=101 Identities=21% Similarity=0.028 Sum_probs=57.5
Q ss_pred HHHHHHHHh-cCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCc-cccc
Q 039772 135 MEELLDLLI-EGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRL-SEIM 212 (608)
Q Consensus 135 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~-~~~~ 212 (608)
...+-.+|. .+=..-+++.|+|.+|+||||||.++.. .....=..++|++........ .++.++...+. .-..
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~---~a~~lG~~~~~l~i~~ 120 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE---YAKKLGVDTDSLLVSQ 120 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEEC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH---HHHHcCCCHHHeEEec
Confidence 334444454 3312346899999999999999998886 333222347888876551111 23444432110 0012
Q ss_pred ccCHHHHHHHHHHHhCC-CcEEEEEcCCC
Q 039772 213 DKNYEMKKIILHEYLMT-KRYLIVIEDVW 240 (608)
Q Consensus 213 ~~~~~~~~~~l~~~L~~-kr~LlVLDdv~ 240 (608)
..+.++....+...... +.-+||+|.+-
T Consensus 121 ~~~~e~~l~~~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 121 PDTGEQALEIADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp CSSHHHHHHHHHHHHTTTCCSEEEEECGG
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEcChH
Confidence 33456666666555543 56689999874
No 277
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.10 E-value=0.011 Score=54.00 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.10 E-value=0.01 Score=53.97 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 279
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.09 E-value=0.025 Score=60.25 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=36.9
Q ss_pred CCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 126 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.+..++.+...+..+. -|.++|.+|+|||+||+++++
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHH
Confidence 478999999999888887663 578999999999999999999
No 280
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.04 E-value=0.017 Score=59.87 Aligned_cols=89 Identities=12% Similarity=0.070 Sum_probs=52.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceee----eeeeEecccc---hHHHHHHHHHHh--CC------CCCccccccc
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFD----CHAWIPDISY---ADQILDIVIKFL--MP------SSRLSEIMDK 214 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~---~~~l~~~il~~l--~~------~~~~~~~~~~ 214 (608)
+.++|.|..|+|||||+..+.+.... +-+ .++|+-+++. ..++.+++...= .. ..+.|.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 34789999999999999999984333 222 4666767766 777777765531 10 0110000001
Q ss_pred CHHHHHHHHHHHhC---CCcEEEEEcCCC
Q 039772 215 NYEMKKIILHEYLM---TKRYLIVIEDVW 240 (608)
Q Consensus 215 ~~~~~~~~l~~~L~---~kr~LlVLDdv~ 240 (608)
-.....-.+-++++ ++.+||++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11111223445543 789999999994
No 281
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.02 E-value=0.058 Score=54.74 Aligned_cols=105 Identities=10% Similarity=0.052 Sum_probs=60.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCC-ccc-ccccCHHHHHHHHHHHh
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSR-LSE-IMDKNYEMKKIILHEYL 227 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~-~~~-~~~~~~~~~~~~l~~~L 227 (608)
.+++|+|..|.||||+.+.+.. .+.......++ ++..++.- ....... .++ ............+...|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~-t~ed~~e~-------~~~~~~~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL-TIEDPIEF-------VHESKKCLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE-EEESSCCS-------CCCCSSSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE-EccCcHHh-------hhhccccceeeeeeccccCCHHHHHHHHh
Confidence 5999999999999999999877 33322222221 11111000 0000000 000 00001123344788888
Q ss_pred CCCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 228 MTKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 228 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
...+=+|++|.+.+.+.++.+..... .|.-||+||-.
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~~---~G~~vl~t~H~ 230 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAAE---TGHLVFGTLHT 230 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHHH---TTCEEEEEESC
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHHh---cCCEEEEEEcc
Confidence 88999999999998877766555432 36668888887
No 282
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.99 E-value=0.028 Score=48.07 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=45.3
Q ss_pred cEEEecCCCCC--cCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecCCC
Q 039772 513 RYLKLNIPSLK--SLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGSIT 568 (608)
Q Consensus 513 r~L~l~~~~i~--~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 568 (608)
..++.++.+++ .+|..+ -.+|++|+|++|.|..||. .+..+.+|+.|+|++|-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 47788888888 999855 3579999999999999988 56889999999999964
No 283
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.98 E-value=0.012 Score=54.43 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+|+|+|+.|.||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999988
No 284
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.96 E-value=0.012 Score=52.72 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999987
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.84 E-value=0.014 Score=54.14 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 286
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.84 E-value=0.015 Score=53.23 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 287
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.82 E-value=0.014 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999997664
No 288
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.81 E-value=0.014 Score=54.04 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+|+|+|+.|.||||+|+.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 289
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.77 E-value=0.012 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++|.|+|++|.||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.76 E-value=0.019 Score=53.58 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999988
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.76 E-value=0.015 Score=53.19 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 292
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.75 E-value=0.014 Score=54.13 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.4
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 293
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.73 E-value=0.025 Score=58.13 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=36.3
Q ss_pred CceechhhHHHHHHHHhc----------------------------CCCCceEEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 127 DTVGLDDRMEELLDLLIE----------------------------GPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
.++|.+..++.+...+.. .......+.++|.+|+|||++|+++++ .....
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~--~l~~~ 99 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK--HLDIP 99 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH--HTTCC
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH--HhCCC
Confidence 578888888777766620 011234578999999999999999998 55333
Q ss_pred e
Q 039772 179 F 179 (608)
Q Consensus 179 F 179 (608)
|
T Consensus 100 ~ 100 (376)
T 1um8_A 100 I 100 (376)
T ss_dssp E
T ss_pred E
Confidence 3
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.72 E-value=0.015 Score=53.74 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999988
No 295
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.72 E-value=0.06 Score=53.19 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+++++|.+|+||||++..++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999887
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.71 E-value=0.018 Score=53.49 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|+|+.|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999988
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.70 E-value=0.015 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999988
No 298
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.70 E-value=0.017 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.4
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.70 E-value=0.018 Score=52.74 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 300
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.66 E-value=0.051 Score=54.43 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=55.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc---------ee-----eeeeeEecccc--hHHHHHHHHHH
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH---------YF-----DCHAWIPDISY--ADQILDIVIKF 201 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~--~~~l~~~il~~ 201 (608)
+-.+|..+=..-.++.|+|.+|+||||||..++....... .. ..++|++.... ..++. +++..
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~ 165 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEH 165 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHH
Confidence 3344433312347899999999999999988876322211 11 46888887665 33333 33444
Q ss_pred hCCCCC-----cccccccCHH---HHHHHHHHHhCC--CcEEEEEcCCC
Q 039772 202 LMPSSR-----LSEIMDKNYE---MKKIILHEYLMT--KRYLIVIEDVW 240 (608)
Q Consensus 202 l~~~~~-----~~~~~~~~~~---~~~~~l~~~L~~--kr~LlVLDdv~ 240 (608)
++.... ..-....+.+ +....+...+.. +.-+||+|.+-
T Consensus 166 ~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 166 AGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred cCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 443210 0001112222 234455555543 45688888884
No 301
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.66 E-value=0.018 Score=58.33 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=34.8
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 122 SSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+....+++|.+..++.+...+.... ..-+.|+|.+|.|||++|+++++
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred CCCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 3445679999886666544443322 22388999999999999999998
No 302
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.65 E-value=0.071 Score=52.11 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.4
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++.|+|.+|+||||||..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999998886
No 303
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.65 E-value=0.043 Score=55.75 Aligned_cols=101 Identities=19% Similarity=0.024 Sum_probs=55.9
Q ss_pred HHHHHHHHh-cCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCC-ccccc
Q 039772 135 MEELLDLLI-EGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSR-LSEIM 212 (608)
Q Consensus 135 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~-~~~~~ 212 (608)
...+-.+|. .+=..-+++.|.|.+|+||||||.+++. .....=..++|++........ .+..++...+ ..-..
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~---~a~~~g~~~~~l~i~~ 122 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQ 122 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEEC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHH---HHHHcCCChhheeeeC
Confidence 344444454 2212346899999999999999988887 333222357888875551111 1344433211 00012
Q ss_pred ccCHHHHHHHHHHHhC-CCcEEEEEcCCC
Q 039772 213 DKNYEMKKIILHEYLM-TKRYLIVIEDVW 240 (608)
Q Consensus 213 ~~~~~~~~~~l~~~L~-~kr~LlVLDdv~ 240 (608)
..+.++....++...+ .+.-+||+|.+-
T Consensus 123 ~~~~e~~~~~~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 123 PDTGEQALEICDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEEECGG
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEcCHH
Confidence 2344555555554442 455689999873
No 304
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.65 E-value=0.018 Score=53.11 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|+|+.|.||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999988
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.63 E-value=0.014 Score=52.77 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..|.|.|++|.||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999987
No 306
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.62 E-value=0.32 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.++|.||+||||+|..++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988886
No 307
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.61 E-value=0.084 Score=52.19 Aligned_cols=86 Identities=5% Similarity=0.009 Sum_probs=51.5
Q ss_pred EEEEEcCCCcchHHHHHHHhcCcccccee--eeeeeEecccchHHHHHHHHHHhCCCCCc-ccccccCHHHH-HHHHHHH
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHYF--DCHAWIPDISYADQILDIVIKFLMPSSRL-SEIMDKNYEMK-KIILHEY 226 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~l~~~il~~l~~~~~~-~~~~~~~~~~~-~~~l~~~ 226 (608)
++-|.|.+|+||||||.++.. .....+ ..++|++....... ..++.++...+. --....+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITP---AYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCH---HHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhH---HHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 789999999999999988776 343332 34788886555111 125666543210 00233455555 4333332
Q ss_pred --h-CCCcEEEEEcCCCC
Q 039772 227 --L-MTKRYLIVIEDVWT 241 (608)
Q Consensus 227 --L-~~kr~LlVLDdv~~ 241 (608)
+ .++.-+||+|-|-.
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 3 34678999999843
No 308
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.61 E-value=0.019 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 309
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.60 E-value=0.017 Score=53.62 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 310
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.59 E-value=0.019 Score=55.44 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|.|+.|.||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 311
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.57 E-value=0.02 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|+|..|.|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 312
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.56 E-value=0.029 Score=55.96 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=29.8
Q ss_pred eechhhHHHHHHHHhcC--CCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 129 VGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 129 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|-...+..+...+... .....+|||.|..|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34344444444444333 34577999999999999999999876
No 313
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.55 E-value=0.02 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|.|+.|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.54 E-value=0.017 Score=54.49 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|+|+|+.|.||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 315
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.53 E-value=0.026 Score=54.05 Aligned_cols=39 Identities=15% Similarity=-0.001 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 133 DRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 133 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+.++............+|+|.|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 333444443333223467899999999999999999987
No 316
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.51 E-value=0.017 Score=52.92 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=22.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceee
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFD 180 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 180 (608)
|.|.|+|++|+|||||++++.. +....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~--~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA--EYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH--HCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hCCCCeE
Confidence 4578999999999999999987 4444443
No 317
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.48 E-value=0.02 Score=52.48 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.48 E-value=0.014 Score=53.09 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 319
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.46 E-value=0.02 Score=52.06 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=20.0
Q ss_pred EEEEEcCCCcchHHHHHHHhcC
Q 039772 151 VVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 320
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.46 E-value=0.075 Score=53.27 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+++|+|..|+||||+++.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999887
No 321
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.46 E-value=0.063 Score=53.92 Aligned_cols=51 Identities=20% Similarity=-0.020 Sum_probs=35.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHh
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFL 202 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l 202 (608)
.++.|.|.+|+||||||..++.+ +..+=..++|++.-....++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLEMSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESSSCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 58899999999999999888873 2222234677776444666666665544
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.45 E-value=0.015 Score=53.98 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++|.|+|++|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 323
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.45 E-value=0.019 Score=55.40 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|.|+|+.|.||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999987
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.44 E-value=0.02 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 325
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.38 E-value=0.022 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|+|+.|.||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 326
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.37 E-value=0.021 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|++.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 327
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.36 E-value=0.022 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|.|+|++|.||||+|+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999988
No 328
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.35 E-value=0.039 Score=54.29 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 329
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.35 E-value=0.017 Score=52.47 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=17.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 330
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.32 E-value=0.018 Score=51.75 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=20.4
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999988
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.30 E-value=0.02 Score=52.60 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 332
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.27 E-value=0.039 Score=51.88 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
..+.+...+... ...+|.|+|.+|+|||||+..+...
T Consensus 25 ~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 25 LADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444444333 3789999999999999999988873
No 333
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.26 E-value=0.025 Score=56.49 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.+||+|.|-||+||||.|.-+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 579999999999999998766654
No 334
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.25 E-value=0.099 Score=53.83 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=58.7
Q ss_pred HhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccC
Q 039772 481 KICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKL 559 (608)
Q Consensus 481 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L 559 (608)
..|..+..|+.+.+......--...+.++..|+.+.+. +.+..+++..|.++.+|+.++|..+ +..+++ .+.++.+|
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 34555556666655543322112334455666666664 3466666665566667777776543 555544 56666777
Q ss_pred cEEEecCCCCCCcCCC--CCCCCcccceeecc
Q 039772 560 RHLNFGSITLPAHPGK--YCGSLENLNFISAL 589 (608)
Q Consensus 560 ~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~ 589 (608)
+.+.+..+ +..++ .+.++..|+.+.+.
T Consensus 337 ~~i~ip~s---v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 337 ERIAIPSS---VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CEEEECTT---CCBCCGGGGTTCTTCCEEEES
T ss_pred CEEEECcc---cCEEhHhHhhCCCCCCEEEEC
Confidence 77766542 44455 45556666666665
No 335
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.21 E-value=0.025 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999995
No 336
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.21 E-value=0.023 Score=50.67 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.21 E-value=0.024 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.20 E-value=0.025 Score=54.81 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 339
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.19 E-value=0.038 Score=53.26 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|.|+|++|.||||+|+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 340
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.16 E-value=0.044 Score=57.19 Aligned_cols=90 Identities=13% Similarity=0.057 Sum_probs=52.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccce--eeeeeeEecccc---hHHHHHHHHHHhCCC--------CCcccccccCH
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHY--FDCHAWIPDISY---ADQILDIVIKFLMPS--------SRLSEIMDKNY 216 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~---~~~l~~~il~~l~~~--------~~~~~~~~~~~ 216 (608)
+.++|.|..|+|||+|+..++++....+. =+.++|+-+++. ..++.+++...=... .+.|.....-.
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 45788999999999999999985433221 134667767766 777777776531110 11000000011
Q ss_pred HHHHHHHHHHhC---CCcEEEEEcCC
Q 039772 217 EMKKIILHEYLM---TKRYLIVIEDV 239 (608)
Q Consensus 217 ~~~~~~l~~~L~---~kr~LlVLDdv 239 (608)
....-.+-++++ ++.+||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 112223444443 69999999997
No 341
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.14 E-value=0.046 Score=55.64 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...++.+.+........+|+|+|.+|+|||||+..+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34555555654445678999999999999999988875
No 342
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.13 E-value=0.021 Score=52.88 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999976
No 343
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.12 E-value=0.025 Score=51.77 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 344
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.11 E-value=0.025 Score=52.62 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.10 E-value=0.026 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999988
No 346
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.09 E-value=0.035 Score=51.97 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=29.9
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 130 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.++..+.+.+.+... ..++|.|+|.+|+|||||+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3444555555555433 378999999999999999998887
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.07 E-value=0.027 Score=50.52 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++++|+|..|.|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 348
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.01 E-value=0.14 Score=52.77 Aligned_cols=138 Identities=14% Similarity=0.067 Sum_probs=89.5
Q ss_pred cccceEEeecCCCCCCCCCcchHHhhccccceeEeecCCCcCccCCcccCCCCCccEEEecCCCCCcCChHHHhcCccCc
Q 039772 458 DSQLHSLLCCSPESRHFDPMDWEKICGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 537 (608)
Q Consensus 458 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~ 537 (608)
+..+.++.+..... ......|.....+..+......+.. ..+..+.+|+.+.+..+ ++.+++..|.++.+|+
T Consensus 252 ~~~l~~~~~~~~~~-----~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 252 CTDLESISIQNNKL-----RIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp CSSCCEEEECCTTC-----EECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccceeEEcCCCcc-----eeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCC
Confidence 55566666554432 2333455666666666555443221 23456778888888654 7788776668889999
Q ss_pred EEeccccccccchh-HhcccccCcEEEecCCCCCCcCCC--CCCCCcccceeeccCCCcccchhcCCCCCCCC
Q 039772 538 TLDMPFSYIEHTAD-EFWKMNKLRHLNFGSITLPAHPGK--YCGSLENLNFISALHPCCCTEDLLGRLPNLQN 607 (608)
Q Consensus 538 ~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP--~i~~L~~L~~l~~~~~~~~~~~~l~~L~~L~~ 607 (608)
.++|.. .+..+++ .+.++.+|+.+.+..+ +..++ .+.++..|+.+.+.+....+...+.++++|+.
T Consensus 324 ~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 324 SIDLPY-LVEEIGKRSFRGCTSLSNINFPLS---LRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKW 392 (394)
T ss_dssp EECCCT-TCCEECTTTTTTCTTCCEECCCTT---CCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEE
T ss_pred EEEeCC-cccEEhHHhccCCCCCCEEEECcc---ccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcE
Confidence 999965 4777765 7888899999988763 56666 67778888888887333333333666766653
No 349
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.01 E-value=0.028 Score=54.25 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+|+|+|+.|.||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999996
No 350
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.00 E-value=0.036 Score=57.78 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=38.3
Q ss_pred CCceechhhHHHHHHHHhcC------------CCCceEEEEEcCCCcchHHHHHHHhcCcccccee
Q 039772 126 RDTVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF 179 (608)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 179 (608)
..++|.++.++.+...+... ....+-|.++|++|+||||+|++++. .....|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~--~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH--HTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH--HcCCCc
Confidence 46889888888887666321 11235588999999999999999998 554444
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.98 E-value=0.027 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.123 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 352
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.98 E-value=0.031 Score=55.68 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|+|..|.|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999999987
No 353
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.94 E-value=0.034 Score=53.32 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|..|.||||||+.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 354
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.92 E-value=0.033 Score=49.47 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 355
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.91 E-value=0.033 Score=51.33 Aligned_cols=23 Identities=4% Similarity=0.255 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-++|+|+|+.|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 47899999999999999999987
No 356
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.86 E-value=0.096 Score=53.06 Aligned_cols=95 Identities=7% Similarity=0.064 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcCcccccee---e-eeeeEecccc-hHHHHHHHHHHhCCCCC-------ccc-cccc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNSSYVKHYF---D-CHAWIPDISY-ADQILDIVIKFLMPSSR-------LSE-IMDK 214 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~-~~~wv~vs~~-~~~l~~~il~~l~~~~~-------~~~-~~~~ 214 (608)
.-.++.|+|..|+|||||+..++......... . .++|++.... ..+-+..+......... ... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 35799999999999999999988732112111 2 3478875443 12222223333322100 000 0011
Q ss_pred CHHHHHHHHHHHhC------CCcEEEEEcCCCCH
Q 039772 215 NYEMKKIILHEYLM------TKRYLIVIEDVWTI 242 (608)
Q Consensus 215 ~~~~~~~~l~~~L~------~kr~LlVLDdv~~~ 242 (608)
...+....+...+. .+.-+||+|.+-..
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 12333444555553 46778999988543
No 357
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.85 E-value=0.024 Score=54.52 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|+|+|+.|.||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999988
No 358
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.84 E-value=0.092 Score=54.66 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 368999999999999999988876
No 359
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.82 E-value=0.04 Score=57.17 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=52.1
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCcccc--------ceee-eeeeEecccc---hHHHHHHHHHH--hCC------CCCcc
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVK--------HYFD-CHAWIPDISY---ADQILDIVIKF--LMP------SSRLS 209 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~---~~~l~~~il~~--l~~------~~~~~ 209 (608)
+.++|.|..|+|||+|+..+.+..... ++=+ .++|+-+++. ..++.+++... +.. ..+.|
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999999854331 1111 4566667666 66677665542 110 01100
Q ss_pred cccccCHHHHHHHHHHHhC---CCcEEEEEcCCC
Q 039772 210 EIMDKNYEMKKIILHEYLM---TKRYLIVIEDVW 240 (608)
Q Consensus 210 ~~~~~~~~~~~~~l~~~L~---~kr~LlVLDdv~ 240 (608)
.....-.....-.+-++++ ++.+||++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0001111112233445543 789999999994
No 360
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.78 E-value=0.035 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999984
No 361
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.76 E-value=0.03 Score=52.08 Aligned_cols=23 Identities=4% Similarity=-0.169 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 362
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.75 E-value=0.027 Score=53.02 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 363
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.75 E-value=0.039 Score=51.96 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 364
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.75 E-value=0.034 Score=50.30 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+|+|.|+.|.||||+|+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 365
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.70 E-value=0.033 Score=51.10 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 366
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.69 E-value=0.036 Score=51.63 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.67 E-value=0.09 Score=53.79 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeee-eEecccchHHHHHHHHHHhCCCCC-cccc-cccCHHHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHA-WIPDISYADQILDIVIKFLMPSSR-LSEI-MDKNYEMKKIILHE 225 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~~l~~~il~~l~~~~~-~~~~-~~~~~~~~~~~l~~ 225 (608)
-.+++|+|..|.||||+++.+.. .+.....+.+ ++...-.. .+..... .++. ...+.......++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEY---------VFKHKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSCCS---------CCCCSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccHhh---------hhccCceEEEeeecCCCHHHHHHHHHH
Confidence 46899999999999999999887 3332212322 22210000 0000000 0000 00011122456777
Q ss_pred HhCCCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 226 YLMTKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 226 ~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.|...+=.|++|.+.+.+.+....... ..|.-|+.|+-.
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~ 243 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHT 243 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCC
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECc
Confidence 777777899999998776554433332 236667777766
No 368
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.65 E-value=0.18 Score=51.95 Aligned_cols=67 Identities=12% Similarity=-0.010 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccc----eeeeeeeEecccc-hHHHHHHHHHHhC
Q 039772 137 ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKH----YFDCHAWIPDISY-ADQILDIVIKFLM 203 (608)
Q Consensus 137 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~-~~~l~~~il~~l~ 203 (608)
.+-.+|..+=..-.++.|+|.+|+|||||+..++-...... .-..++|++.... ...-...+++.++
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~g 237 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFG 237 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTT
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcC
Confidence 34444433312346899999999999999997653111211 2234778875544 2222333455544
No 369
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.64 E-value=0.052 Score=51.70 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=25.4
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeE
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWI 185 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 185 (608)
.+++|+|..|.|||||.+.+.. -. ....+.+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G--l~-~p~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC--LD-KPTEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT--SS-CCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhc--CC-CCCceEEEE
Confidence 5899999999999999999987 22 223455555
No 370
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.63 E-value=0.055 Score=51.56 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 371
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.60 E-value=0.25 Score=51.79 Aligned_cols=51 Identities=18% Similarity=0.045 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKF 201 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~ 201 (608)
-.++.|.|.+|+||||+|..++.+ +...=..++|++......++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSlEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLEMGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECSSSCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEECCCCHHHHHHHHHHH
Confidence 358999999999999999888874 322223477777655445555555544
No 372
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.59 E-value=0.038 Score=51.92 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999988
No 373
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.57 E-value=0.037 Score=52.24 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 374
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.56 E-value=0.053 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.56 E-value=0.042 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 376
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.55 E-value=0.059 Score=51.45 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=21.0
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999987
No 377
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.54 E-value=0.16 Score=52.66 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999998887
No 378
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.54 E-value=0.029 Score=56.86 Aligned_cols=52 Identities=17% Similarity=0.018 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCcccccee-ee-eeeEecccc
Q 039772 136 EELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYF-DC-HAWIPDISY 190 (608)
Q Consensus 136 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~-~~wv~vs~~ 190 (608)
-++++.|..-.. =+.++|+|..|+|||+|+..+.+ .+.... +. ++++-+++.
T Consensus 163 iraID~l~Pigr-GQR~lIfg~~g~GKT~Ll~~Ia~--~i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGK-GQRGMIVAPPKAGKTTILKEIAN--GIAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBT-TCEEEEEECTTCCHHHHHHHHHH--HHHHHCTTSEEEEEECSCC
T ss_pred chhhhhcccccC-CceEEEecCCCCChhHHHHHHHH--HHhhcCCCeEEEEEEeccC
Confidence 355666654321 25789999999999999999988 443221 21 345555555
No 379
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.53 E-value=0.054 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999986
No 380
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.53 E-value=0.12 Score=54.78 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCC-------CCceEEEEEcCCCcchHHHHHHHhc
Q 039772 135 MEELLDLLIEGP-------PQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 135 ~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++.++|.... ...++|.|+|.+|+||||++..+..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445556664421 2467999999999999999988885
No 381
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.52 E-value=0.036 Score=51.16 Aligned_cols=22 Identities=9% Similarity=-0.000 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999998
No 382
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.51 E-value=0.021 Score=53.27 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|+|.|..|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999987
No 383
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.48 E-value=0.037 Score=51.72 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=19.3
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 384
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.48 E-value=0.21 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|.|+|++|.||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999988
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.43 E-value=0.035 Score=52.19 Aligned_cols=23 Identities=13% Similarity=-0.129 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999988
No 386
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.41 E-value=0.029 Score=53.18 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=16.1
Q ss_pred eEEEEEcCCCcchHHHHHHHh-c
Q 039772 150 SVVAILDSIGLDKTAFATEAY-N 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~-~ 171 (608)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999998 5
No 387
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.39 E-value=0.2 Score=46.19 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 132 DDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 132 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..-+..+..++..- +.-..+.|+|++|.||||+|.++++
T Consensus 42 ~~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 42 ITFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHH
Confidence 34466666666542 2234689999999999999999988
No 388
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.38 E-value=0.042 Score=51.27 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|.|.|+.|.||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 389
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.36 E-value=0.047 Score=51.21 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCcchHHHHHHHhc
Q 039772 147 PQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 147 ~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+||.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 390
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.33 E-value=0.048 Score=54.08 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+++|+|.+|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999875
No 391
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.33 E-value=0.061 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.32 E-value=0.041 Score=51.46 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=19.3
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 393
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.31 E-value=0.029 Score=50.58 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++++|+|..|.|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 394
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.31 E-value=0.082 Score=52.80 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|+|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999998887
No 395
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.30 E-value=0.041 Score=50.89 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=20.2
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+|+|.|+.|.||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 396
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.30 E-value=0.041 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|..|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998884
No 397
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.30 E-value=0.037 Score=50.80 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.6
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+++|+|..|+|||||++.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999999887
No 398
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.29 E-value=0.13 Score=50.72 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 399
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.25 E-value=0.15 Score=53.41 Aligned_cols=86 Identities=12% Similarity=-0.007 Sum_probs=51.5
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCccccceeee-eeeEecccc---hHHHHHHHHHHhCCCC--------Cccc----cc
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWIPDISY---ADQILDIVIKFLMPSS--------RLSE----IM 212 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~---~~~l~~~il~~l~~~~--------~~~~----~~ 212 (608)
+.++|.|..|+|||+|| ..+.| .. +-+. ++|+-+++. +.++.+.+...=.... +.|. ..
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n--~~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIIN--QR--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHT--TS--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHh--hc--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 46899999999999996 57777 32 2333 567777777 7777777655311111 1000 00
Q ss_pred ccCHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 039772 213 DKNYEMKKIILHEYLMTKRYLIVIEDVWT 241 (608)
Q Consensus 213 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 241 (608)
....-...+++++ +++.+||++||+-.
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 239 PYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 1111122344444 58999999999943
No 400
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.20 E-value=0.075 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 401
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.12 E-value=0.071 Score=51.21 Aligned_cols=32 Identities=6% Similarity=0.090 Sum_probs=25.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeE
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWI 185 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 185 (608)
.+++|+|..|.|||||.+.++. -.... +.+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G--l~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG--MTSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT--SSCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC--CCCCC--eEEEE
Confidence 5899999999999999999998 44443 55554
No 402
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.11 E-value=0.26 Score=51.79 Aligned_cols=49 Identities=18% Similarity=0.126 Sum_probs=33.6
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCcccccee-eeeeeEecccchHHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYF-DCHAWIPDISYADQILDIVI 199 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~l~~~il 199 (608)
-.++.|.|.+|+||||||..++.+ +...- ..++|++......++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFSLEMSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEESSSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEECCCCHHHHHHHHH
Confidence 358999999999999999998873 33221 24777775444445555544
No 403
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.10 E-value=0.26 Score=50.25 Aligned_cols=58 Identities=28% Similarity=0.260 Sum_probs=27.5
Q ss_pred CCCCccEEEecCCCCCcCChHHHhcCccCcEEeccccccccchh-HhcccccCcEEEecC
Q 039772 508 NLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIEHTAD-EFWKMNKLRHLNFGS 566 (608)
Q Consensus 508 ~L~~Lr~L~l~~~~i~~LP~si~~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~ 566 (608)
.+..|+.+.+.. .+..++...|..+.+|+.+.+.++.+..+++ .+.++.+|+.+.+..
T Consensus 261 ~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 261 NCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred eeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 344444444432 2444444444445555555555444544443 444555555555543
No 404
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.08 E-value=0.096 Score=51.60 Aligned_cols=51 Identities=10% Similarity=0.058 Sum_probs=32.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceee-eeeeEecccchHHHHHHHHHHh
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFD-CHAWIPDISYADQILDIVIKFL 202 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~l~~~il~~l 202 (608)
.+++|+|.+|+|||||++.++. .+...-. .++|+.......++...+....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~--~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL--QWGTAMGKKVGLAMLEESVEETAEDLIGLH 87 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH--HHHHTSCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH--HHHHHcCCeEEEEeCcCCHHHHHHHHHHHH
Confidence 5899999999999999999887 3332222 3556654333344444444443
No 405
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.07 E-value=0.071 Score=50.49 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 406
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.04 E-value=0.094 Score=57.44 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=36.9
Q ss_pred CCCceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 125 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...++|.+..++.+...+..+ ..+.|+|.+|.||||||+.++.
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 356899988888888777765 3789999999999999999998
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.04 E-value=0.073 Score=50.82 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 408
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.03 E-value=0.054 Score=53.87 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|||+|..|.|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 409
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.02 E-value=0.076 Score=50.48 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILD 196 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~ 196 (608)
-.++.|.|.+|+||||||..++. .....=..++|++......++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~--~~~~~~~~v~~~~~e~~~~~~~~ 68 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW--NGLKMGEPGIYVALEEHPVQVRQ 68 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEESSSCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccCCHHHHHH
Confidence 35899999999999999987765 22222234777775444333333
No 410
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.00 E-value=0.073 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|..|.|||||.+.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999987
No 411
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.00 E-value=0.074 Score=51.00 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 412
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.99 E-value=0.063 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999987
No 413
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.97 E-value=0.079 Score=55.26 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++|.|+|.+|+||||+|..++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999988887
No 414
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.97 E-value=0.075 Score=51.33 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 415
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.95 E-value=0.18 Score=53.01 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=50.3
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCccccceeee-eeeEecccc---hHHHHHHHHHHhCC--------CCCcccccccCH
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWIPDISY---ADQILDIVIKFLMP--------SSRLSEIMDKNY 216 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~---~~~l~~~il~~l~~--------~~~~~~~~~~~~ 216 (608)
+.++|.|..|+|||+|| ..+.+. .. -+. ++|+-+++. +.++.+.+...=.. ..+.|.....-.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ--KG--QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT--TT--TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46899999999999996 577773 32 343 466667766 66777776652111 111000000000
Q ss_pred HHHHHHHHHHh--CCCcEEEEEcCCCC
Q 039772 217 EMKKIILHEYL--MTKRYLIVIEDVWT 241 (608)
Q Consensus 217 ~~~~~~l~~~L--~~kr~LlVLDdv~~ 241 (608)
....-.+-+++ +++.+||++||+-.
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11112233333 57999999999943
No 416
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.95 E-value=0.23 Score=53.01 Aligned_cols=53 Identities=8% Similarity=-0.061 Sum_probs=37.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccce-eeeeeeEecccchHHHHHHHHHHhC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWIPDISYADQILDIVIKFLM 203 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~l~~~il~~l~ 203 (608)
-.++.|.|.+|+||||||..++.+ +... =..++|++......++...++....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEESVEETAEDLIGLHN 295 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccCCHHHHHHHHHHHHc
Confidence 468899999999999999888873 3322 2347788775556677777665544
No 417
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.93 E-value=0.065 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999987
No 418
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.93 E-value=0.076 Score=51.21 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 419
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.85 E-value=0.41 Score=50.12 Aligned_cols=71 Identities=18% Similarity=-0.019 Sum_probs=44.2
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccce-eeeeeeEecccchHHHHHHHHHHhC
Q 039772 130 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWIPDISYADQILDIVIKFLM 203 (608)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~l~~~il~~l~ 203 (608)
|...-...+-.++ .+=..-.++.|.|.+|+||||||..++.+ +... =..++|++...+..++...++....
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLEMPAAQLTLRMMCSEA 253 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECCCCHHHHHHHHHHHHc
Confidence 3333344454445 33223468999999999999999888873 3221 1347787765556667777665543
No 420
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.84 E-value=0.079 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 421
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.84 E-value=0.054 Score=54.33 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999988
No 422
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.83 E-value=0.12 Score=54.45 Aligned_cols=101 Identities=14% Similarity=0.053 Sum_probs=55.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHH-HHHhcCcccc------ceeee-eeeEecccc---hHHHHHHHHHHhCC--
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFA-TEAYNSSYVK------HYFDC-HAWIPDISY---ADQILDIVIKFLMP-- 204 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~------~~F~~-~~wv~vs~~---~~~l~~~il~~l~~-- 204 (608)
.++.|..-. .=+.++|.|..|+|||+|| ..+.| ... ++-+. ++|+-+++. +.++.+.+...=..
T Consensus 152 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~--q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~ 228 (510)
T 2ck3_A 152 AVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIIN--QKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKY 228 (510)
T ss_dssp HHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHH--THHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGG
T ss_pred eeccccccc-cCCEEEEecCCCCCchHHHHHHHHH--HHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCccc
Confidence 455554321 1246899999999999995 57777 333 12343 667777766 66777776652111
Q ss_pred ------CCCcccccccCHHHHHHHHHHHh--CCCcEEEEEcCCCC
Q 039772 205 ------SSRLSEIMDKNYEMKKIILHEYL--MTKRYLIVIEDVWT 241 (608)
Q Consensus 205 ------~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~ 241 (608)
..+.|.....-.....-.+-+++ +++.+||++||+-.
T Consensus 229 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 229 TIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 01100000000011111233333 57999999999953
No 423
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.80 E-value=0.055 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|++|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 424
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.79 E-value=0.058 Score=48.70 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999887
No 425
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.77 E-value=0.057 Score=53.50 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+++|+|..|+||||+++.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999999999887
No 426
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.72 E-value=0.088 Score=50.93 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999988
No 427
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.72 E-value=0.039 Score=54.37 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+|+|.|..|.||||+|+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999887
No 428
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.69 E-value=0.086 Score=51.20 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.54 E-value=0.061 Score=50.69 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=19.6
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 430
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.54 E-value=0.06 Score=50.29 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=19.4
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.51 E-value=0.06 Score=50.45 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999988
No 432
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.50 E-value=0.12 Score=58.01 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=57.5
Q ss_pred CCCceechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHH
Q 039772 125 SRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQ 193 (608)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 193 (608)
-.++.|.++.++++.+.+.-. -...+-|.++|++|.|||.+|+++++ +....| +.++..
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~~~--- 545 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIKGP--- 545 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECCHH---
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEeccc---
Confidence 356788888888887765432 11234477999999999999999999 554443 333311
Q ss_pred HHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhCCCcEEEEEcCCC
Q 039772 194 ILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVW 240 (608)
Q Consensus 194 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 240 (608)
+++... ...+...+.+.....-+..++.|++|+++
T Consensus 546 ---~l~s~~---------vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 546 ---ELLTMW---------FGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp ---HHHTTT---------CSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred ---hhhccc---------cchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 122111 12223333333333334578999999996
No 433
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.41 E-value=0.069 Score=51.71 Aligned_cols=108 Identities=9% Similarity=0.077 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHHhC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM 228 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 228 (608)
-.+++|+|..|.|||||++.+.. .+...+.+.+++.-. ++..+.+... .+..+.... ... ......+...|.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~-~i~~~~~~~~-~~v~q~~~g-l~~---~~l~~~la~aL~ 96 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIED-PIEYVFKHKK-SIVNQREVG-EDT---KSFADALRAALR 96 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEES-SCCSCCCCSS-SEEEEEEBT-TTB---SCHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCC-cceeecCCcc-eeeeHHHhC-CCH---HHHHHHHHHHHh
Confidence 46899999999999999999887 333222333332210 0000000000 000000000 011 122455666666
Q ss_pred CCcEEEEEcCCCCHhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 229 TKRYLIVIEDVWTIGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 229 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
.++=+|++|..-+.+....+.... ..|.-|++||-+
T Consensus 97 ~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~ 132 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHT 132 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECC
T ss_pred hCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCc
Confidence 677789999997665443333322 236678888877
No 434
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.41 E-value=0.097 Score=51.19 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999988
No 435
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.38 E-value=0.081 Score=52.87 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 436
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.37 E-value=0.068 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999998
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.36 E-value=0.075 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999988
No 438
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.36 E-value=0.069 Score=51.08 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|..|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999986
No 439
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.35 E-value=0.12 Score=54.42 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.-.+++|+|.+|+|||||++.++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 357999999999999999999987
No 440
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.32 E-value=0.092 Score=46.52 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhcC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 441
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.32 E-value=0.19 Score=52.79 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=51.0
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCccccceeee-eeeEecccc---hHHHHHHHHHHhCC--------CCCccccc----
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWIPDISY---ADQILDIVIKFLMP--------SSRLSEIM---- 212 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~---~~~l~~~il~~l~~--------~~~~~~~~---- 212 (608)
+.++|.|..|+|||+|| ..+.|. .. -+. ++|+-+++. +.++.+.+...=.. ..+.|...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45899999999999996 578773 32 333 466667766 55655555442100 11111111
Q ss_pred ccCHHHHHHHHHHHhCCCcEEEEEcCCCCH
Q 039772 213 DKNYEMKKIILHEYLMTKRYLIVIEDVWTI 242 (608)
Q Consensus 213 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~ 242 (608)
....-...++++. +++.+||++||+-..
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHHHH
Confidence 1112233444555 589999999998443
No 442
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.32 E-value=0.11 Score=53.06 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 137 ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 137 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+.+-+.-.-..-.+++|+|+.|.|||||++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33343333323356999999999999999999997
No 443
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.24 E-value=0.071 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999998
No 444
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.19 E-value=0.077 Score=52.82 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999998
No 445
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.18 E-value=0.16 Score=53.85 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHH
Q 039772 137 ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIV 198 (608)
Q Consensus 137 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~i 198 (608)
++++.|..-. .=..++|.|..|+|||+|+..+.+.. +-+.++|+-+++. ..++.+++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 3455554321 12578999999999999999988732 2246778877776 66666665
No 446
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.15 E-value=0.084 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888999999999999999875
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.14 E-value=0.073 Score=52.55 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+|.|.|++|.||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 448
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.13 E-value=0.26 Score=51.69 Aligned_cols=86 Identities=12% Similarity=0.012 Sum_probs=50.4
Q ss_pred eEEEEEcCCCcchHHHH-HHHhcCccccceeee-eeeEecccc---hHHHHHHHHHHhCCCCCc--ccccccC-------
Q 039772 150 SVVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWIPDISY---ADQILDIVIKFLMPSSRL--SEIMDKN------- 215 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~---~~~l~~~il~~l~~~~~~--~~~~~~~------- 215 (608)
+.++|.|..|+|||+|| ..+.| ... -+. ++|+-+++. +.++.+.+...=...... .......
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~--~~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIIN--QKG--QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHG--GGS--CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHH--hhc--CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46899999999999996 57777 332 343 466667766 777777776532111100 0000111
Q ss_pred ---HHHHHHHHHHHhCCCcEEEEEcCCCC
Q 039772 216 ---YEMKKIILHEYLMTKRYLIVIEDVWT 241 (608)
Q Consensus 216 ---~~~~~~~l~~~L~~kr~LlVLDdv~~ 241 (608)
.-...++++. +++.+||++||+-.
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 239 PYAGCAMGEYFMY--KGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHT--TTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHHH
Confidence 1122233333 57999999999843
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.94 E-value=0.089 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...+|+|+|+.|.||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 450
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.93 E-value=0.069 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.-.+|+|.|..|.||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999999988
No 451
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.89 E-value=0.08 Score=48.34 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 452
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.87 E-value=0.08 Score=50.96 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 453
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.87 E-value=0.093 Score=53.21 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+++|+|..|+||||+++.++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 57999999999999999999887
No 454
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.79 E-value=1.6 Score=41.04 Aligned_cols=103 Identities=14% Similarity=0.004 Sum_probs=55.0
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcC-ccccceee--eeeeEecccc-hHHHHHHHHHHhCCCCC--
Q 039772 134 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNS-SYVKHYFD--CHAWIPDISY-ADQILDIVIKFLMPSSR-- 207 (608)
Q Consensus 134 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F~--~~~wv~vs~~-~~~l~~~il~~l~~~~~-- 207 (608)
..+++...+..+ +.+.|.|..|.||||+.....-+ ........ ..+++.-... ..++.+.+...++....
T Consensus 65 ~q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 65 FESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred HHHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 344555555554 47899999999999866444321 11111222 2333322222 55566666655543210
Q ss_pred --------------cccccccCHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 039772 208 --------------LSEIMDKNYEMKKIILHEYLMTKRYLIVIEDVWT 241 (608)
Q Consensus 208 --------------~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 241 (608)
...+...+...+...+...+.+- -+||+|.++.
T Consensus 141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 141 CGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred EEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 01122245666666666644443 4789999976
No 455
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.79 E-value=0.095 Score=51.91 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999976
No 456
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.74 E-value=0.12 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999987
No 457
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.70 E-value=0.099 Score=51.83 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|+|+|-||+||||+|..++.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 578999999999999999988776
No 458
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.68 E-value=0.15 Score=54.30 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccc---hHHHHHHH
Q 039772 137 ELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISY---ADQILDIV 198 (608)
Q Consensus 137 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~l~~~i 198 (608)
++++.|..-. .=..++|.|..|+|||+|+..+.+.. +-+.++|+-+++. ..++.+++
T Consensus 221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4556665422 12579999999999999999998832 2245777777766 55555443
No 459
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.65 E-value=0.14 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 460
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.65 E-value=0.1 Score=45.58 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
+.|.|+|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998874
No 461
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.65 E-value=0.3 Score=52.43 Aligned_cols=114 Identities=14% Similarity=-0.038 Sum_probs=57.8
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCC------CCcc-----cccccCHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPS------SRLS-----EIMDKNYE 217 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~------~~~~-----~~~~~~~~ 217 (608)
-.+++|.|..|+|||||++.++.. ....=..++++...+....+...+ ..++.. .... .....+..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~--~~~~G~~vi~~~~ee~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVEN--ACANKERAILFAYEESRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEESSSCHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHhCCCCEEEEEEeCCHHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 368999999999999999999873 222111234544322233333222 111110 0000 01223444
Q ss_pred HHHHHH-HHHhCCCcEEEEEcCCCC----------HhHHHHHhhhcCCCCCCcEEEEEccC
Q 039772 218 MKKIIL-HEYLMTKRYLIVIEDVWT----------IGVWDVIREILPDNHNRSRVLITLTQ 267 (608)
Q Consensus 218 ~~~~~l-~~~L~~kr~LlVLDdv~~----------~~~~~~l~~~~~~~~~gs~IivTTR~ 267 (608)
+.+..+ ...+..+.-++|+|-... ......+...+. ..|..||+||.+
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~--~~g~tvilvsh~ 416 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK--QEEITGLFTNTS 416 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH--HTTCEEEEEEEC
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH--hCCCEEEEEECc
Confidence 554444 444566778999994321 112222222332 236778888877
No 462
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.64 E-value=0.088 Score=54.46 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 136 EELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 136 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+.+.|..-.....+++|+|..|+|||||.+.+..
T Consensus 56 ~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 56 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 344444443333457999999999999999999987
No 463
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.63 E-value=0.19 Score=61.60 Aligned_cols=99 Identities=19% Similarity=0.042 Sum_probs=57.7
Q ss_pred HHHHHHh-cCCCCceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHHHHHhCCCCC-ccccccc
Q 039772 137 ELLDLLI-EGPPQLSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIVIKFLMPSSR-LSEIMDK 214 (608)
Q Consensus 137 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~il~~l~~~~~-~~~~~~~ 214 (608)
.+-.+|. .+=..-+.|-|+|++|+||||||.++.. ....+=..++|+++......+. ++.++.+-+ ..-....
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~l~v~~~~ 1488 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPD 1488 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEECCS
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH---HHHcCCCchhceeecCC
Confidence 3444444 2212357899999999999999999988 3333323477888766511111 344442110 0001223
Q ss_pred CHHHHHHHHHHHhC-CCcEEEEEcCCC
Q 039772 215 NYEMKKIILHEYLM-TKRYLIVIEDVW 240 (608)
Q Consensus 215 ~~~~~~~~l~~~L~-~kr~LlVLDdv~ 240 (608)
..++....++...+ .+.-+||+|.+.
T Consensus 1489 ~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1489 TGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 34556666665553 467799999994
No 464
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.56 E-value=0.089 Score=47.58 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHhcC
Q 039772 151 VVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999873
No 465
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.53 E-value=0.096 Score=48.67 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=47.8
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHH-------HHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQ-------ILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 223 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-------l~~~il~~l~~~~~~~~~~~~~~~~~~~~l 223 (608)
+|.|.|++|+||||.|+.+.. + | +...++.+.-+++ +...+-..+... .....+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~--~----~-g~~~istGdllR~~i~~~t~lg~~~~~~~~~G------~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK--E----K-GFVHISTGDILREAVQKGTPLGKKAKEYMERG------ELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--H----H-CCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHT------CCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--H----H-CCeEEcHHHHHHHHHHhcChhhhhHHHHHhcC------CcCCHHHHHHHH
Confidence 577899999999999999988 2 2 1223332221111 111111111111 112234556777
Q ss_pred HHHhCCCcEEEEEcCCC-CHhHHHHHhhh
Q 039772 224 HEYLMTKRYLIVIEDVW-TIGVWDVIREI 251 (608)
Q Consensus 224 ~~~L~~kr~LlVLDdv~-~~~~~~~l~~~ 251 (608)
.+.+..... +|||..- +..+.+.|...
T Consensus 69 ~~~l~~~~~-~ilDGfPRt~~Qa~~l~~~ 96 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPRTVKQAEALDEM 96 (206)
T ss_dssp HHHCCSSSC-EEEESCCCSHHHHHHHHHH
T ss_pred HHhhccCCc-eEecCCchhHHHHHHHHhh
Confidence 888866554 6889974 34565555443
No 466
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.48 E-value=0.094 Score=51.86 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+++|+|..|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 36899999999999999999987
No 467
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.36 E-value=0.1 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999988
No 468
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.35 E-value=0.1 Score=47.86 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 469
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.17 E-value=0.16 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999986
No 470
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.16 E-value=0.12 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++|+|.|-||+||||+|..++.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 47899999999999999988876
No 471
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.12 E-value=0.1 Score=50.71 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 472
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.12 E-value=0.12 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
++|+|.|-||+||||+|..++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6788899999999999988876
No 473
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.09 E-value=0.19 Score=50.74 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.+-+........+|+|+|.+|+|||||+..+..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3333333334578999999999999999998865
No 474
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.08 E-value=0.12 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
-.+|.|.|+.|+||||+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 475
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.07 E-value=0.15 Score=45.86 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcC
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999874
No 476
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.98 E-value=0.17 Score=51.23 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|.|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 5899999999999999999976
No 477
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.97 E-value=0.13 Score=49.06 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCcchHHHHHHHhc
Q 039772 149 LSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
...|.|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999988
No 478
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.89 E-value=0.21 Score=50.23 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 138 LLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 138 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.+-+.-.-....+++|+|.+|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444433333468999999999999999999874
No 479
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.85 E-value=0.14 Score=46.24 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 480
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.83 E-value=0.038 Score=63.17 Aligned_cols=21 Identities=10% Similarity=-0.020 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCcchHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEA 169 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v 169 (608)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999988
No 481
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.81 E-value=0.33 Score=44.65 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=21.6
Q ss_pred EEEEEcCCCcchHHHHHHHhcCccccce
Q 039772 151 VVAILDSIGLDKTAFATEAYNSSYVKHY 178 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 178 (608)
.|.|-|.-|+||||.++.+++ .....
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHC
Confidence 477889999999999999988 55544
No 482
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.76 E-value=0.12 Score=45.27 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEEcCCCcchHHHHHHHhcC
Q 039772 151 VVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 483
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.70 E-value=0.15 Score=54.12 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=31.0
Q ss_pred CceechhhHHHHHHHHhcCCCCceEEEEEcCCCcchHHHHHHHhc
Q 039772 127 DTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..+.|.+-.+.+.+..........+|.+.|+.|.||||+|+++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence 344455444555554422222357899999999999999999998
No 484
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.68 E-value=0.13 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999988
No 485
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.65 E-value=0.13 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCcchHHHHHHHhc
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++++|+|+.|.|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 378999999999999999999986
No 486
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.62 E-value=0.31 Score=45.11 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=23.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCccccceee
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVKHYFD 180 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 180 (608)
+.|.|-|..|+||||+++.++. .....++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCC
Confidence 4688999999999999999988 5544444
No 487
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.62 E-value=0.17 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCcchHHHHHHHhcC
Q 039772 148 QLSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 148 ~~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 488
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.60 E-value=0.21 Score=47.47 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcCccccceeeeeeeEecccchHHHHHHH
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIPDISYADQILDIV 198 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~l~~~i 198 (608)
-.++.|.|.+|+||||+|..++.+ .....-..++|++......++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEERARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSSCHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccCCHHHHHHHH
Confidence 358889999999999999876542 2223334566776555544444443
No 489
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.59 E-value=0.14 Score=46.28 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=20.1
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+.+|+|..|.|||||+.+++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999875
No 490
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.51 E-value=0.13 Score=45.22 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.-.|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998874
No 491
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.47 E-value=0.13 Score=46.57 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHhcC
Q 039772 150 SVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
-.|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 492
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.45 E-value=0.21 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|+|||||.+.++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 493
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.40 E-value=0.16 Score=46.65 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+.|.|.|..|+||||||.++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999988
No 494
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.38 E-value=0.23 Score=53.83 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
+++.|.|.+|.||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5888999999999999998887
No 495
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.33 E-value=0.18 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|+|||||.+.++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999987
No 496
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.32 E-value=0.14 Score=48.04 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=18.6
Q ss_pred EEEEEcCCCcchHHHHHHHhc
Q 039772 151 VVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 151 vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.|.+.|.||+||||+|..+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 477889999999999988887
No 497
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.28 E-value=0.15 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCcchHHHHHHHhcC
Q 039772 149 LSVVAILDSIGLDKTAFATEAYNS 172 (608)
Q Consensus 149 ~~vi~I~G~gGiGKTtLA~~v~~~ 172 (608)
.-.|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998874
No 498
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.25 E-value=0.22 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 5899999999999999999987
No 499
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.25 E-value=0.22 Score=50.82 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHhc
Q 039772 150 SVVAILDSIGLDKTAFATEAYN 171 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~ 171 (608)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999999987
No 500
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.25 E-value=0.15 Score=47.11 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.6
Q ss_pred eEEEEEcCCCcchHHHHHHHhcCcccc
Q 039772 150 SVVAILDSIGLDKTAFATEAYNSSYVK 176 (608)
Q Consensus 150 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 176 (608)
.+|.|.|+.|.||||+|+.++. +..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~--~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE--HYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH--HTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHH--HhC
Confidence 5899999999999999999998 554
Done!