Query 039773
Match_columns 150
No_of_seqs 195 out of 1260
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 13:02:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.6E-27 5.7E-32 192.9 14.4 146 2-147 73-280 (455)
2 PRK10367 DNA-damage-inducible 99.9 1.3E-24 2.8E-29 176.5 14.6 145 2-146 66-270 (441)
3 PRK00187 multidrug efflux prot 99.9 2.7E-24 5.9E-29 175.5 15.5 146 2-147 66-275 (464)
4 PRK10189 MATE family multidrug 99.9 2.3E-22 5E-27 164.8 15.3 146 2-147 85-298 (478)
5 PRK09575 vmrA multidrug efflux 99.9 1E-21 2.2E-26 159.9 15.5 144 2-145 69-272 (453)
6 PRK01766 multidrug efflux prot 99.9 1.8E-20 3.8E-25 152.3 14.5 145 2-146 68-277 (456)
7 KOG1347 Uncharacterized membra 99.8 9.5E-21 2.1E-25 154.9 12.1 150 1-150 84-289 (473)
8 TIGR00797 matE putative efflux 99.7 9E-16 2E-20 119.8 15.5 143 2-144 49-252 (342)
9 PRK00187 multidrug efflux prot 99.5 2.6E-13 5.7E-18 111.0 11.1 100 2-101 292-442 (464)
10 PRK15099 O-antigen translocase 99.5 4.1E-12 8.9E-17 102.2 15.2 135 4-142 61-250 (416)
11 PRK01766 multidrug efflux prot 99.4 1.3E-12 2.8E-17 106.3 10.9 100 2-101 295-440 (456)
12 PRK09575 vmrA multidrug efflux 99.4 2.5E-12 5.4E-17 104.9 11.4 99 2-102 291-435 (453)
13 PRK10189 MATE family multidrug 99.3 5.7E-11 1.2E-15 97.7 12.5 102 2-103 315-462 (478)
14 TIGR01695 mviN integral membra 99.3 8E-11 1.7E-15 96.4 13.3 123 2-126 280-452 (502)
15 TIGR02900 spore_V_B stage V sp 99.3 1.5E-10 3.3E-15 94.4 13.7 102 2-103 292-434 (488)
16 TIGR02900 spore_V_B stage V sp 99.3 2E-10 4.3E-15 93.7 14.3 128 2-129 57-241 (488)
17 COG0534 NorM Na+-driven multid 99.2 7.6E-11 1.6E-15 96.5 11.2 102 1-103 296-443 (455)
18 TIGR01695 mviN integral membra 99.2 3.1E-09 6.8E-14 87.1 16.4 111 32-144 136-259 (502)
19 PF03023 MVIN: MviN-like prote 99.0 9.7E-09 2.1E-13 84.0 13.7 119 5-125 258-426 (451)
20 COG0728 MviN Uncharacterized m 99.0 2.2E-08 4.7E-13 82.9 13.4 121 5-128 292-464 (518)
21 PF01554 MatE: MatE; InterPro 98.9 3.9E-10 8.5E-15 79.1 0.3 68 2-69 49-162 (162)
22 PF14667 Polysacc_synt_C: Poly 98.8 9.6E-08 2.1E-12 66.1 11.4 70 32-103 11-80 (146)
23 PRK10367 DNA-damage-inducible 98.7 6.2E-08 1.3E-12 79.1 9.3 95 2-102 288-430 (441)
24 PF03023 MVIN: MviN-like prote 98.2 0.00029 6.3E-09 57.8 16.6 111 32-144 110-234 (451)
25 PRK10459 colanic acid exporter 98.1 0.00011 2.3E-09 60.5 13.8 67 35-103 339-405 (492)
26 PF13440 Polysacc_synt_3: Poly 97.9 0.0023 5E-08 47.3 16.1 108 34-143 105-219 (251)
27 PRK15099 O-antigen translocase 97.9 0.00025 5.3E-09 57.2 11.1 56 43-100 354-409 (416)
28 COG2244 RfbX Membrane protein 97.7 0.00086 1.9E-08 54.8 12.6 83 3-88 271-396 (480)
29 PF01943 Polysacc_synt: Polysa 97.6 0.015 3.3E-07 43.2 16.0 95 34-129 123-221 (273)
30 PRK10459 colanic acid exporter 96.9 0.074 1.6E-06 43.7 15.1 94 35-129 127-223 (492)
31 COG0728 MviN Uncharacterized m 96.7 0.15 3.2E-06 42.9 14.7 111 32-142 145-266 (518)
32 TIGR00797 matE putative efflux 84.9 2.3 5.1E-05 32.8 5.2 30 2-31 272-301 (342)
33 KOG1347 Uncharacterized membra 84.5 0.04 8.7E-07 45.8 -5.1 95 2-96 305-445 (473)
34 COG2244 RfbX Membrane protein 82.9 24 0.00052 28.7 14.1 91 35-129 132-229 (480)
35 PF04506 Rft-1: Rft protein; 78.6 41 0.00089 28.7 10.7 70 32-102 397-469 (549)
36 COG1230 CzcD Co/Zn/Cd efflux s 32.8 1.5E+02 0.0032 23.4 5.5 52 32-83 106-160 (296)
37 PF04138 GtrA: GtrA-like prote 27.7 1.7E+02 0.0037 18.7 10.2 82 57-141 7-92 (117)
38 COG4267 Predicted membrane pro 23.6 4.3E+02 0.0094 22.0 11.0 62 39-103 150-211 (467)
39 PF10693 DUF2499: Protein of u 20.6 2.5E+02 0.0054 18.0 5.8 17 134-150 74-90 (90)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.95 E-value=2.6e-27 Score=192.94 Aligned_cols=146 Identities=19% Similarity=0.215 Sum_probs=131.2
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 36 (150)
+.|.++++||++|+||+|++++..++++++ ++.++
T Consensus 73 ~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~ 152 (455)
T COG0534 73 GTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLS 152 (455)
T ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999887 66888
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh-hC-CCchhhHHHHHHHHHHHHHHHHHHHhccCC---------
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR-VQ-FGVIGTAISLNFPWWLLVLGLFGYVACGGC--------- 105 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~-~~-~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~--------- 105 (150)
.++++++|++||+|.||+++++++++|+++||+||++ ++ ||+.|+|+||.+++++.++..+.|+.+++.
T Consensus 153 ~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (455)
T COG0534 153 FVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKL 232 (455)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhc
Confidence 9999999999999999999999999999999999997 68 999999999999999999999888876531
Q ss_pred -CCCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhhh
Q 039773 106 -PLTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALDA 147 (150)
Q Consensus 106 -~~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~aa 147 (150)
+.+|+.+|+++|+|+|+++++..| ..+.+.+.+|++.+|+.+
T Consensus 233 ~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~ 280 (455)
T COG0534 233 LKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYG 280 (455)
T ss_pred cCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 245666799999999999999998 777889999988766654
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=176.49 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=123.9
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 36 (150)
+.|.++++||++|+||+|++++..++++++ +..++
T Consensus 66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~ 145 (441)
T PRK10367 66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN 145 (441)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999887 44667
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc-C---C-----CC
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG-G---C-----PL 107 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~---~-----~~ 107 (150)
.+++.++|++||+|+||+++++++++|+++||+|++.++||+.|+|+||.+++++.+++...+++++ + . ++
T Consensus 146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 225 (441)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT 225 (441)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh
Confidence 7889999999999999999999999999999999998899999999999999999988776666543 1 1 11
Q ss_pred Cc-ccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhh
Q 039773 108 TW-TGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALD 146 (150)
Q Consensus 108 ~~-~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~a 146 (150)
+| +.+||++|+|.|.++++..| +.+.+++.+|++++|+.
T Consensus 226 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~ 270 (441)
T PRK10367 226 AWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVN 270 (441)
T ss_pred hhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 22 23589999999999999888 67788999998765543
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.92 E-value=2.7e-24 Score=175.46 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=123.6
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH--------------------------------------------HHHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE--------------------------------------------NFAYQF 37 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~ 37 (150)
+.|+++++||++|+||+|+++++.++++.+ +..+..
T Consensus 66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~ 145 (464)
T PRK00187 66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFM 145 (464)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999887 457778
Q ss_pred hHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh-h---CCCchhhHHHHHHHHHHHHHHHHHHHhccC-C-----C-
Q 039773 38 PPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR-V---QFGVIGTAISLNFPWWLLVLGLFGYVACGG-C-----P- 106 (150)
Q Consensus 38 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~-~---~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~-~-----~- 106 (150)
.+++++|++||+++||++++++.++|+++||+||+. + +||+.|+|+||+++++...+.+..|+++++ + +
T Consensus 146 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (464)
T PRK00187 146 ALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRK 225 (464)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhc
Confidence 899999999999999999999999999999999984 2 599999999999999988877766665431 1 1
Q ss_pred ----CCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhhh
Q 039773 107 ----LTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALDA 147 (150)
Q Consensus 107 ----~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~aa 147 (150)
.+++.+|+++|+|+|.+++++.| +.+.+++++|++++|+..
T Consensus 226 ~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~ 275 (464)
T PRK00187 226 GLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQ 275 (464)
T ss_pred cccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 12234599999999999999998 667789999998766543
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=2.3e-22 Score=164.79 Aligned_cols=146 Identities=12% Similarity=0.180 Sum_probs=120.8
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH-----------------------------------------------HHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-----------------------------------------------NFA 34 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-----------------------------------------------~~~ 34 (150)
+.|.++++||++|+||+|++++..++++.+ +..
T Consensus 85 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~ 164 (478)
T PRK10189 85 DLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAA 164 (478)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999877 445
Q ss_pred HHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh----hCCCchhhHHHHHHHHHHHHHHHHHHHhcc-C--CC-
Q 039773 35 YQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR----VQFGVIGTAISLNFPWWLLVLGLFGYVACG-G--CP- 106 (150)
Q Consensus 35 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~----~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~--~~- 106 (150)
+...+++++|+.||++.||++++++.++|+++||+|++. ++||+.|+|+||.+++++..++...++.++ + .+
T Consensus 165 ~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
T PRK10189 165 ITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRI 244 (478)
T ss_pred HHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccee
Confidence 667788999999999999999999999999999999985 379999999999999999887766555432 1 11
Q ss_pred --------CCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhhh
Q 039773 107 --------LTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALDA 147 (150)
Q Consensus 107 --------~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~aa 147 (150)
.+++.+|+++|+|+|.+++...+ +.+.+++.+|++++|+..
T Consensus 245 ~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~ 298 (478)
T PRK10189 245 SLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNF 298 (478)
T ss_pred eeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 13344699999999999998887 446678899987665543
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=1e-21 Score=159.88 Aligned_cols=144 Identities=13% Similarity=0.149 Sum_probs=120.2
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 36 (150)
+.|.++++||++|+||+|++++..++++.+ +..++
T Consensus 69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~ 148 (453)
T PRK09575 69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA 148 (453)
T ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999888 44566
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCC---------CC
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGC---------PL 107 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~---------~~ 107 (150)
..+..++|+.|+++.|++.++++.++|+++||+|++.+++|+.|+++||.+++++..++...|+++++. +.
T Consensus 149 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (453)
T PRK09575 149 IALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRF 228 (453)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCc
Confidence 778889999999999999999999999999999999889999999999999999998887777664421 11
Q ss_pred CcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCch-hhhh
Q 039773 108 TWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNS-GTAL 145 (150)
Q Consensus 108 ~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~-~la~ 145 (150)
+|+.+|+++|+|+|.++++..+ +...+.+.+|++ ++|+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa 272 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGA 272 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 3334599999999999999888 445566777863 4444
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.85 E-value=1.8e-20 Score=152.29 Aligned_cols=145 Identities=16% Similarity=0.341 Sum_probs=121.4
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 36 (150)
+.+.++++||++|++|+|++++..++++.+ +..+.
T Consensus 68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 147 (456)
T PRK01766 68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY 147 (456)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999998877 44567
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh----hCCCchhhHHHHHHHHHHHHHHHHHHHhccC-C------
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR----VQFGVIGTAISLNFPWWLLVLGLFGYVACGG-C------ 105 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~----~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~-~------ 105 (150)
.+++++++++||+++|++.++++.++|+++||+|++. +++|+.|+++||.+++++..++...|.++++ .
T Consensus 148 ~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~ 227 (456)
T PRK01766 148 QVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLF 227 (456)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhh
Confidence 7788999999999999999999999999999999984 3589999999999999999888777766432 1
Q ss_pred ----CCCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhh
Q 039773 106 ----PLTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALD 146 (150)
Q Consensus 106 ----~~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~a 146 (150)
+.+++.+|+++|+|+|..++...| +.+.+++.+|++++|+.
T Consensus 228 ~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~ 277 (456)
T PRK01766 228 KGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAH 277 (456)
T ss_pred ccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 123345699999999999999888 45567889998766554
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.85 E-value=9.5e-21 Score=154.85 Aligned_cols=150 Identities=43% Similarity=0.758 Sum_probs=135.0
Q ss_pred CcchhHHHHHhhhccCccchhHHHHHHHHHH--------------------------------------------HHHHH
Q 039773 1 MASALESLCGKAFGAKKYYMLGVYMQRSSIE--------------------------------------------NFAYQ 36 (150)
Q Consensus 1 l~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~--------------------------------------------~~~~~ 36 (150)
+.++++|+|+|++|+++++..+.+++|+..+ ++...
T Consensus 84 l~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~ 163 (473)
T KOG1347|consen 84 LQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVS 163 (473)
T ss_pred cchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHH
Confidence 4578999999999999999999999999766 67888
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCc-------
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTW------- 109 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~------- 109 (150)
..+++++++|+++.+..+++..+.++|++++|++++++++|+.|++++..+++|.....+..|.....+++.|
T Consensus 164 ~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~ 243 (473)
T KOG1347|consen 164 FPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEF 243 (473)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999888765544444
Q ss_pred ccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhhhcCC
Q 039773 110 TGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALDALSI 150 (150)
Q Consensus 110 ~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~aa~~i 150 (150)
+++++++|+++|+++|.|.| ...+..|.++++..++++++|
T Consensus 244 ~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI 289 (473)
T KOG1347|consen 244 DSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSI 289 (473)
T ss_pred hhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 45689999999999999998 888999999998777777654
No 8
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.70 E-value=9e-16 Score=119.77 Aligned_cols=143 Identities=23% Similarity=0.461 Sum_probs=118.4
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 36 (150)
+.+..+.++|++|+||+|++++..+++..+ +..+.
T Consensus 49 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 128 (342)
T TIGR00797 49 GTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLN 128 (342)
T ss_pred HHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999988777 33455
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH-hhC-CCchhhHHHHHHHHHHHHHHHHHHHhcc-CCC-------
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVY-RVQ-FGVIGTAISLNFPWWLLVLGLFGYVACG-GCP------- 106 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~-~~~-~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~~~------- 106 (150)
...+.++|+.|+++.+++.++++.++|+++++++++ .++ +|+.|+++++.+++++..++...+.+++ +.+
T Consensus 129 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
T TIGR00797 129 FVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLL 208 (342)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 677789999999999999999999999999999998 678 9999999999999999888877666542 221
Q ss_pred -CCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhh
Q 039773 107 -LTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTA 144 (150)
Q Consensus 107 -~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la 144 (150)
.+++.+|+++|+|+|..++..++ +.+.+.+.+|+++.+
T Consensus 209 ~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~ 252 (342)
T TIGR00797 209 KPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALA 252 (342)
T ss_pred CCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 22345699999999999999887 455678888876543
No 9
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.49 E-value=2.6e-13 Score=110.99 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=86.2
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH--------------------------------------------------
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-------------------------------------------------- 31 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-------------------------------------------------- 31 (150)
+.|.++++||++|+||+|+++++.++++.+
T Consensus 292 ~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~ 371 (464)
T PRK00187 292 SYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFEL 371 (464)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998877
Q ss_pred HHHHHHhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 039773 32 NFAYQFPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVA 101 (150)
Q Consensus 32 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~ 101 (150)
+..+..++.+.+|+.||+|.++++++++. ++|++++|++++.+++|+.|+++++.+++++..+.....++
T Consensus 372 ~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 372 FDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred hhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 11223355788999999999999999997 99999999999988999999999999999998766654443
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=99.45 E-value=4.1e-12 Score=102.23 Aligned_cols=135 Identities=13% Similarity=0.002 Sum_probs=99.2
Q ss_pred hhHHHHHhhhccCccchhHHHHHHHHHH-----------------------------------------HHHHHHhHHHH
Q 039773 4 ALESLCGKAFGAKKYYMLGVYMQRSSIE-----------------------------------------NFAYQFPPERF 42 (150)
Q Consensus 4 ~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~ 42 (150)
+.+..++|+ ++|+|+.++....++.+ ...+.....+.
T Consensus 61 a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (416)
T PRK15099 61 GVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAI 138 (416)
T ss_pred eeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667877 67778888877776655 22334556788
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc-C-------CCCCcccHHH
Q 039773 43 LQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG-G-------CPLTWTGFWE 114 (150)
Q Consensus 43 l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~-------~~~~~~~~~~ 114 (150)
+|+.||++.++....++.++|+.+ +++++.. .|+.|+++||.+++.+..+....++.++ + .+.+|+.+|+
T Consensus 139 lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 216 (416)
T PRK15099 139 LKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQ 216 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHH
Confidence 999999999999999999999887 5555432 3999999999999999876655555433 1 1223455699
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHH-hcCCchh
Q 039773 115 FIKLSAASGVMLLWD-----TLILMI-GNLNNSG 142 (150)
Q Consensus 115 ~l~lg~P~~~~~~~e-----~~~~~~-~~lg~~~ 142 (150)
+++.|+|..+++... ....++ ..+|+++
T Consensus 217 ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~ 250 (416)
T PRK15099 217 LGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDE 250 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999988775 444555 4888664
No 11
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.43 E-value=1.3e-12 Score=106.29 Aligned_cols=100 Identities=21% Similarity=0.154 Sum_probs=89.2
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 36 (150)
+.|.++++||++|+||+|++++..++++.+ +..+.
T Consensus 295 ~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~ 374 (456)
T PRK01766 295 AMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQ 374 (456)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999998876 34566
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVA 101 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~ 101 (150)
.+..+++||.||++.|+++++++. ++++++.|++.+.+++|+.|+++++.+++++..++...++.
T Consensus 375 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~ 440 (456)
T PRK01766 375 VIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLR 440 (456)
T ss_pred HHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999987 79999999999888899999999999999999887765554
No 12
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.41 E-value=2.5e-12 Score=104.86 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=86.5
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH----------------------------------------------HHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------------------------NFAY 35 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~----------------------------------------------~~~~ 35 (150)
+.|.++++||++||||+|++++..++++.+ +...
T Consensus 291 ~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~ 370 (453)
T PRK09575 291 AEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGF 370 (453)
T ss_pred HHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999877 4456
Q ss_pred HHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 039773 36 QFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVAC 102 (150)
Q Consensus 36 ~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 102 (150)
....+.++||.||++.+++++....++|+++.|++... +|+.|+++++.+++++..++...++++
T Consensus 371 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 371 LVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 67778899999999999999999888999999988653 799999999999999988777665554
No 13
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.29 E-value=5.7e-11 Score=97.71 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=87.2
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 36 (150)
+.|.+++++|++||+|+|++++..+.+..+ +....
T Consensus 315 ~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~ 394 (478)
T PRK10189 315 GSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAAS 394 (478)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999888766 33445
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG 103 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 103 (150)
....+.+||.||++.++++++++. ++-+++.|++.+.+++|+.|.+++..+++.+..++...++++.
T Consensus 395 ~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~ 462 (478)
T PRK10189 395 WVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSG 462 (478)
T ss_pred HHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567888999999999999998886 7889999998887789999999999999999887766665543
No 14
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.29 E-value=8e-11 Score=96.45 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=93.9
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH-------------------------------------------------H
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-------------------------------------------------N 32 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-------------------------------------------------~ 32 (150)
+.+..|.+||++|++|+|++++..+++... +
T Consensus 280 ~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~ 359 (502)
T TIGR01695 280 STVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIF 359 (502)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999988887655 2
Q ss_pred HHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCCC-CCccc
Q 039773 33 FAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCP-LTWTG 111 (150)
Q Consensus 33 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~-~~~~~ 111 (150)
..+.....+.+++.||+|.+++.+.++.++|++++++++. .+|..|+++|+.+++.+..++...+.+++... +.++.
T Consensus 360 ~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (502)
T TIGR01695 360 YSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLKGILPFGV 437 (502)
T ss_pred HHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHH
Confidence 2334455677899999999999999999999999999976 37899999999999999988877666654222 22223
Q ss_pred HHHHHHHHHHHHHHH
Q 039773 112 FWEFIKLSAASGVML 126 (150)
Q Consensus 112 ~~~~l~lg~P~~~~~ 126 (150)
.+++.|.-+++.++.
T Consensus 438 ~~~~~~~~~as~~m~ 452 (502)
T TIGR01695 438 LKVLAKLVIASAIIG 452 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666655553
No 15
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.26 E-value=1.5e-10 Score=94.41 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=85.3
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH-----------------------------------------HHHHHHhHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-----------------------------------------NFAYQFPPE 40 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~ 40 (150)
+.+..|..+|++|+||+|+.++..++...+ +........
T Consensus 292 ~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~ 371 (488)
T TIGR02900 292 STALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVLAPSFPFLYFSAPLQ 371 (488)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999888877655 234455567
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773 41 RFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG 103 (150)
Q Consensus 41 ~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 103 (150)
+.+++.||+|.+++.+.++.++|+++|++++..+.+|+.|+++||.+++.+..++...+.++.
T Consensus 372 ~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 372 SILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999998865678999999999999999888876666543
No 16
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.26 E-value=2e-10 Score=93.74 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=100.1
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH-----------------------------------------HHHHHHhHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-----------------------------------------NFAYQFPPE 40 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~ 40 (150)
+.+....+||+.|++|+|++++...++.++ +..+....+
T Consensus 57 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 136 (488)
T TIGR02900 57 PVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLK 136 (488)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677899999999999999988887765 113455577
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh-----hCCCchhhHHHHHHHHHHHHHHHHHHHhcc-C--CCC-----
Q 039773 41 RFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR-----VQFGVIGTAISLNFPWWLLVLGLFGYVACG-G--CPL----- 107 (150)
Q Consensus 41 ~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~-----~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~--~~~----- 107 (150)
.++|+.+|.+.++..+.++.++|++++..+++. ..+|+.|+++++.+++++..+....+++++ + .+.
T Consensus 137 ~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (488)
T TIGR02900 137 GYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDY 216 (488)
T ss_pred HHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 889999999999999999999999988777662 236788999999999999888776555433 1 111
Q ss_pred ---CcccHHHHHHHHHHHHHHHHHH
Q 039773 108 ---TWTGFWEFIKLSAASGVMLLWD 129 (150)
Q Consensus 108 ---~~~~~~~~l~lg~P~~~~~~~e 129 (150)
+++.+|++++.|+|..++...+
T Consensus 217 ~~~~~~~~k~l~~~~~p~~l~~~~~ 241 (488)
T TIGR02900 217 KSEGKALLFDLFSVSLPLTLSRFIG 241 (488)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 1335699999999999988877
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.25 E-value=7.6e-11 Score=96.50 Aligned_cols=102 Identities=21% Similarity=0.204 Sum_probs=90.3
Q ss_pred CcchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHH
Q 039773 1 MASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAY 35 (150)
Q Consensus 1 l~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~ 35 (150)
++.|.+++++|++||||+|++++..+.+..+ +...
T Consensus 296 i~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~ 375 (455)
T COG0534 296 IAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGI 375 (455)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999998887 3467
Q ss_pred HHhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773 36 QFPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG 103 (150)
Q Consensus 36 ~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 103 (150)
.....+.+||.||+|.|+++++++. .+.+++.|++.+.+ +|..|.+++..+++.+..++...+++++
T Consensus 376 ~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 376 QFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788999999999999999999986 77899999988866 9999999999999999988887777654
No 18
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.16 E-value=3.1e-09 Score=87.06 Aligned_cols=111 Identities=12% Similarity=0.068 Sum_probs=83.3
Q ss_pred HHHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhH--HHHHHHHHHHHHHHHHHHhccC--CC-
Q 039773 32 NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTA--ISLNFPWWLLVLGLFGYVACGG--CP- 106 (150)
Q Consensus 32 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa--~at~is~~~~~~~~~~~~~~~~--~~- 106 (150)
+..+....+.++|+.||++.+++.+.+.++++++...+ +..++|+.|++ +++.+++.+..+....+.++++ .+
T Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~--~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 213 (502)
T TIGR01695 136 LISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLF--FDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP 213 (502)
T ss_pred HHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHH--HHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 33455667889999999999999999998888775433 34578999988 9999999998887766665432 22
Q ss_pred ---CCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhh
Q 039773 107 ---LTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTA 144 (150)
Q Consensus 107 ---~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la 144 (150)
.+++.+|+++|.|.|..++...+ +-..+.+.+|+++++
T Consensus 214 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~ 259 (502)
T TIGR01695 214 RFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVS 259 (502)
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 23445699999999999988777 445567777765443
No 19
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.02 E-value=9.7e-09 Score=84.03 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=94.0
Q ss_pred hHHHHHhhhccCccchhHHHHHHHHHH-------------------------------------------------HHHH
Q 039773 5 LESLCGKAFGAKKYYMLGVYMQRSSIE-------------------------------------------------NFAY 35 (150)
Q Consensus 5 ~~~lvsq~~Ga~~~~~~~~~~~~~~~~-------------------------------------------------~~~~ 35 (150)
.-|..|+..-+||.++.++.+++++.. ++.+
T Consensus 258 ~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l 337 (451)
T PF03023_consen 258 VFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYAL 337 (451)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 346678888899999998888887665 6677
Q ss_pred HHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCcccH-HH
Q 039773 36 QFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF-WE 114 (150)
Q Consensus 36 ~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~-~~ 114 (150)
...+.+.+.+++|+|.|++++.++.++|++++++++. .+|..|.++|++++.+++++++..+++|+....+++.+ +.
T Consensus 338 ~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~~~~~~~~~~~ 415 (451)
T PF03023_consen 338 NDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLGLFSFRKILLF 415 (451)
T ss_pred HHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence 8888999999999999999999999999999988776 47999999999999999998888777765323334444 34
Q ss_pred HHHHHHHHHHH
Q 039773 115 FIKLSAASGVM 125 (150)
Q Consensus 115 ~l~lg~P~~~~ 125 (150)
..+.-.+..++
T Consensus 416 ~~~~~~~~~~~ 426 (451)
T PF03023_consen 416 LLKILLASALM 426 (451)
T ss_pred HHHHHHHHHHH
Confidence 44434444443
No 20
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.96 E-value=2.2e-08 Score=82.92 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=96.1
Q ss_pred hHHHHHhhhccCccchhHHHHHHHHHH-------------------------------------------------HHHH
Q 039773 5 LESLCGKAFGAKKYYMLGVYMQRSSIE-------------------------------------------------NFAY 35 (150)
Q Consensus 5 ~~~lvsq~~Ga~~~~~~~~~~~~~~~~-------------------------------------------------~~~~ 35 (150)
+-|-.|++...+|.++..+.+++++.+ ++.+
T Consensus 292 llP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L 371 (518)
T COG0728 292 LLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFAL 371 (518)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHH
Confidence 456789999999999988888888766 7778
Q ss_pred HHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCC---CCCcccH
Q 039773 36 QFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGC---PLTWTGF 112 (150)
Q Consensus 36 ~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~---~~~~~~~ 112 (150)
...+...+.+++|+|+|+.+++++.++|+.+|++++. .+|..|.|+|++++.|+++.+++...+++.. .+.|..+
T Consensus 372 ~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~ 449 (518)
T COG0728 372 VKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLF 449 (518)
T ss_pred HHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHH
Confidence 8888999999999999999999999999999976665 4678889999999999998887766665522 2345544
Q ss_pred HHHHHHHHHHHHHHHH
Q 039773 113 WEFIKLSAASGVMLLW 128 (150)
Q Consensus 113 ~~~l~lg~P~~~~~~~ 128 (150)
. ..|+-+-.+++...
T Consensus 450 ~-~~k~~l~~~i~~~~ 464 (518)
T COG0728 450 L-ILKLLLASAIMAAA 464 (518)
T ss_pred H-HHHHHHHHHHHHHH
Confidence 5 56666666665443
No 21
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=98.87 E-value=3.9e-10 Score=79.12 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=62.3
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 36 (150)
+.|.++++||++|++|+|++++..++++.+ +..+.
T Consensus 49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (162)
T PF01554_consen 49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF 128 (162)
T ss_dssp HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence 568899999999999999999999999888 55777
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHH
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWL 69 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~ 69 (150)
...++++++.|+++.+++++.++. ++|++++|+
T Consensus 129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 888899999999999999999999 999999985
No 22
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.84 E-value=9.6e-08 Score=66.05 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=61.9
Q ss_pred HHHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773 32 NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG 103 (150)
Q Consensus 32 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 103 (150)
+..+.....+.+++.||+|.++..+.++.++|+++|++++. .+|..|+++|+.+++.+.......+.+++
T Consensus 11 ~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 11 FMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777899999999999999999999999999999975 58999999999999999988877676654
No 23
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.75 E-value=6.2e-08 Score=79.07 Aligned_cols=95 Identities=17% Similarity=0.077 Sum_probs=68.6
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH--------------------------------------------HHH-HH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE--------------------------------------------NFA-YQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~--------------------------------------------~~~-~~ 36 (150)
+.|.+++++|++|+||+|++++..+++..+ +.. ..
T Consensus 288 ~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~ 367 (441)
T PRK10367 288 AYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWC 367 (441)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999988766 000 22
Q ss_pred HhHHHHHhhcc---hhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 039773 37 FPPERFLQCQL---KNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVAC 102 (150)
Q Consensus 37 ~~~~~~l~~~g---~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 102 (150)
......+++.+ |+|.|++++.++..+ -+ +..+++|+.|.+++..+++.+..+++..++++
T Consensus 368 ~~~~~~~~g~lrg~dt~~~~~~~~~~~~~----~~--~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~ 430 (441)
T PRK10367 368 YLLDGMFIGATRAAEMRNSMAVAAAGFAL----TL--LTLPWLGNHGLWLALTVFLALRGLSLAAIWRR 430 (441)
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHHHHH----HH--HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344444 699999999887532 11 11235899999999999999998887665543
No 24
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=98.15 E-value=0.00029 Score=57.81 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=81.5
Q ss_pred HHHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCC---chhhHHHHHHHHHHHHHHHHHHHhcc--CCC
Q 039773 32 NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFG---VIGTAISLNFPWWLLVLGLFGYVACG--GCP 106 (150)
Q Consensus 32 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~G---v~Gaa~at~is~~~~~~~~~~~~~~~--~~~ 106 (150)
+..+...+.+.++++++...|....++.++.-+..-+++ ....| +.+.+++..++..++.+..+.+.++. +.+
T Consensus 110 ~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~--~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~ 187 (451)
T PF03023_consen 110 FIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLL--SNSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFR 187 (451)
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 446667788999999999999988887776655533322 23466 88899999999999988888777765 222
Q ss_pred --CCcc--cHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhh
Q 039773 107 --LTWT--GFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTA 144 (150)
Q Consensus 107 --~~~~--~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la 144 (150)
.+|+ +.|+++|...|..+..... +-..+++.+++...+
T Consensus 188 ~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs 234 (451)
T PF03023_consen 188 PKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVS 234 (451)
T ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 3443 3699999999999987666 445567778766544
No 25
>PRK10459 colanic acid exporter; Provisional
Probab=98.13 E-value=0.00011 Score=60.47 Aligned_cols=67 Identities=12% Similarity=-0.017 Sum_probs=54.6
Q ss_pred HHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773 35 YQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG 103 (150)
Q Consensus 35 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 103 (150)
........+.+.|++|.++..+++.++++++..+.+.. .+|+.|+++|+.+++.+.......+..++
T Consensus 339 ~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 339 VGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555678999999999999999999999988877664 46999999999999998877776666443
No 26
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.90 E-value=0.0023 Score=47.32 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=71.0
Q ss_pred HHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc-CCCCCcccH
Q 039773 34 AYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG-GCPLTWTGF 112 (150)
Q Consensus 34 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~~~~~~~~~ 112 (150)
...+..+..+++.++.+.......+..........++.+ .+.+..+..++..++..+..+....+.+++ +.+++++ .
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 182 (251)
T PF13440_consen 105 ALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKLRLSFKFS-W 182 (251)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhh-H
Confidence 445667888999999999999988888777444444443 334888888888888887665544333222 1222222 2
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHhc-CCchhh
Q 039773 113 WEFIKLSAASGVMLLWD-----TLILMIGN-LNNSGT 143 (150)
Q Consensus 113 ~~~l~lg~P~~~~~~~e-----~~~~~~~~-lg~~~l 143 (150)
++.+|.+.|........ .-.++++. +|+++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~ 219 (251)
T PF13440_consen 183 RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34799999999987776 33455555 665543
No 27
>PRK15099 O-antigen translocase; Provisional
Probab=97.87 E-value=0.00025 Score=57.19 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=45.5
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHH
Q 039773 43 LQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYV 100 (150)
Q Consensus 43 l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~ 100 (150)
+-+.++++..+...+...+++++++|+++.. +|..|+++|+.+++.+..++.....
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~ 409 (416)
T PRK15099 354 VIAKASLRFYILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVF 409 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888888888999999998864 7899999999999999887665433
No 28
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=97.75 E-value=0.00086 Score=54.83 Aligned_cols=83 Identities=24% Similarity=0.319 Sum_probs=66.9
Q ss_pred chhHHHHHhhhccCccchhHHHHHHHHHH-------------------------------------------HHHHHHhH
Q 039773 3 SALESLCGKAFGAKKYYMLGVYMQRSSIE-------------------------------------------NFAYQFPP 39 (150)
Q Consensus 3 ~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~ 39 (150)
...-|..++.+.++|.++.++...+...+ +..+....
T Consensus 271 ~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~ 350 (480)
T COG2244 271 RVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLT 350 (480)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 45667889999998888876666665544 34555666
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHH
Q 039773 40 ERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFP 88 (150)
Q Consensus 40 ~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is 88 (150)
...+++.|+++..++.+.++.++|.++|++++. ..|..|+++++ .+
T Consensus 351 ~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 351 SSLLQALGKQRLLLLISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 889999999999999999999999999999986 46778888888 44
No 29
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.55 E-value=0.015 Score=43.19 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=71.6
Q ss_pred HHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc-CC---CCCc
Q 039773 34 AYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG-GC---PLTW 109 (150)
Q Consensus 34 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~~---~~~~ 109 (150)
........++++.++.+.....+.+..+...+.-.++++. +.++.+..++..++..+..+....+.+++ +. ..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (273)
T PF01943_consen 123 SLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSK 201 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccch
Confidence 3445567888999999999888888888888776666653 34478888999999888877777666643 22 2235
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 039773 110 TGFWEFIKLSAASGVMLLWD 129 (150)
Q Consensus 110 ~~~~~~l~lg~P~~~~~~~e 129 (150)
+..|+++|.|.|..+.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~ 221 (273)
T PF01943_consen 202 KFFKEILRFGLPLFLSSLLS 221 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999987776
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=96.94 E-value=0.074 Score=43.71 Aligned_cols=94 Identities=9% Similarity=-0.033 Sum_probs=64.0
Q ss_pred HHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc-CCC--CCccc
Q 039773 35 YQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG-GCP--LTWTG 111 (150)
Q Consensus 35 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~~~--~~~~~ 111 (150)
+....+..++...+.+.......+..+........+.+ .+.|+.+..+++.+++.+..+......+++ +.+ .+++.
T Consensus 127 ~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (492)
T PRK10459 127 IGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLAS 205 (492)
T ss_pred HhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCccceecHHH
Confidence 33445677788888887777777776666665555443 478999999999999887765543322222 222 23455
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039773 112 FWEFIKLSAASGVMLLWD 129 (150)
Q Consensus 112 ~~~~l~lg~P~~~~~~~e 129 (150)
+|++++.|.|........
T Consensus 206 ~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 206 VKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHhhhHHHHHHHHHH
Confidence 699999999999877655
No 31
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=96.67 E-value=0.15 Score=42.94 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=76.5
Q ss_pred HHHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccC----CCC
Q 039773 32 NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGG----CPL 107 (150)
Q Consensus 32 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~----~~~ 107 (150)
+..+.....+.+++.++-.+|-+.-.+-|+.-|...+.+-.....-..+.+|++.++-..+.+..+...++.. .+.
T Consensus 145 ~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~ 224 (518)
T COG0728 145 FISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRF 224 (518)
T ss_pred HHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCC
Confidence 3345555667888899988888877766665554444333322223568888899999999888887777652 233
Q ss_pred Ccc--cHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchh
Q 039773 108 TWT--GFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSG 142 (150)
Q Consensus 108 ~~~--~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~ 142 (150)
.|+ +.|++++.-.|..+..... +-+.+++.+.+.+
T Consensus 225 ~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gs 266 (518)
T COG0728 225 GFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGS 266 (518)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 444 5699999999999987665 5567777776543
No 32
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=84.93 E-value=2.3 Score=32.84 Aligned_cols=30 Identities=20% Similarity=0.079 Sum_probs=26.5
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE 31 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~ 31 (150)
+.+..+.++|++|+||+|++++..+++..+
T Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (342)
T TIGR00797 272 GIAVSILVGQALGAGDPKRAKEVARVALKL 301 (342)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 457788999999999999999999988877
No 33
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=84.48 E-value=0.04 Score=45.76 Aligned_cols=95 Identities=21% Similarity=0.147 Sum_probs=55.7
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH-----------HH----------------------------------HHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-----------NF----------------------------------AYQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-----------~~----------------------------------~~~ 36 (150)
+.|..+-++..+|++|++.++.....+... .+ ...
T Consensus 305 ~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q 384 (473)
T KOG1347|consen 305 SAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQ 384 (473)
T ss_pred hhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccch
Confidence 457788999999999999998877777544 11 111
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGL 96 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~ 96 (150)
.+.++..++.|..+...++++..- ++-++...++-|..++|+.|.+++......+....+
T Consensus 385 ~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l 445 (473)
T KOG1347|consen 385 AVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVL 445 (473)
T ss_pred hhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHH
Confidence 122223344555555444443332 333333333333456899999998888744444443
No 34
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=82.86 E-value=24 Score=28.73 Aligned_cols=91 Identities=10% Similarity=-0.065 Sum_probs=47.7
Q ss_pred HHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHh--cc-CCCCC---
Q 039773 35 YQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVA--CG-GCPLT--- 108 (150)
Q Consensus 35 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~--~~-~~~~~--- 108 (150)
.....+.++|+.++.+...+..... . ......+.... .......++..++..........+.. ++ ..+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (480)
T COG2244 132 LSSVLRGLFQGFGRFGPLALSIVSS-I--FLLAAVFALLF-AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF 207 (480)
T ss_pred HHHHHHHHHHHHhhcccchhHHHHH-H--HHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc
Confidence 3344567778888777766663322 1 11111111111 22334445555555554444443332 22 12222
Q ss_pred -cccHHHHHHHHHHHHHHHHHH
Q 039773 109 -WTGFWEFIKLSAASGVMLLWD 129 (150)
Q Consensus 109 -~~~~~~~l~lg~P~~~~~~~e 129 (150)
++.+++.++.|+|........
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~ 229 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLN 229 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHH
Confidence 446699999999999987776
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=78.62 E-value=41 Score=28.74 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=49.9
Q ss_pred HHHHHHhHHHHHhhcchhHHHHHHH---HHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 039773 32 NFAYQFPPERFLQCQLKNMVIAWVS---LVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVAC 102 (150)
Q Consensus 32 ~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 102 (150)
+++++-....|+++..+++-...-+ .+..++.+..+|+|+.. ++|..|--+|..+...+..+....++++
T Consensus 397 ~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 397 FLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555667777776655544433 44457788889999987 8999999998888888777777666654
No 36
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=32.77 E-value=1.5e+02 Score=23.37 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=38.8
Q ss_pred HHHHHHhHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHh--hCCCchhhHH
Q 039773 32 NFAYQFPPERFLQCQL-KNMVIAWVSLVALLLHILLSWLLVYR--VQFGVIGTAI 83 (150)
Q Consensus 32 ~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~ni~l~~~~i~~--~~~Gv~Gaa~ 83 (150)
.+..++.+.+++.... ++...+++++++.++|.+-.++|-.. -+++..|+-+
T Consensus 106 ~~I~~EAi~R~~~P~~i~~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~L 160 (296)
T COG1230 106 LLILWEAIQRLLAPPPIHYSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYL 160 (296)
T ss_pred HHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHH
Confidence 7788899999997665 44566777788899999988887664 1367777654
No 37
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=27.72 E-value=1.7e+02 Score=18.69 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccHHHHHHHHHHHHHHHHHH--HHH
Q 039773 57 LVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTW--TGFWEFIKLSAASGVMLLWD--TLI 132 (150)
Q Consensus 57 ~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~lg~P~~~~~~~e--~~~ 132 (150)
.++.++|...-+++....++ ...+|..++..+..+.-+..-++-..+.+. +.++++.|..+-..+..... ...
T Consensus 7 ~~~~~v~~~~~~~l~~~~~~---~~~~A~~ia~~~~~~~~f~ln~~~tF~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 83 (117)
T PF04138_consen 7 VIGTLVDFGVFYLLLEFLGL---NYLLANVIAFIVAIIFNFILNRRFTFRSRGRSSRWRQFLRFFVVYLLGLLLNTLILW 83 (117)
T ss_pred HHHHHHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544432223 355667777666654443222111122111 11566666666666665555 334
Q ss_pred HHHhcCCch
Q 039773 133 LMIGNLNNS 141 (150)
Q Consensus 133 ~~~~~lg~~ 141 (150)
.+...++.+
T Consensus 84 ~~~~~~~~~ 92 (117)
T PF04138_consen 84 LLVDWLGIP 92 (117)
T ss_pred HHHHHhCch
Confidence 444555543
No 38
>COG4267 Predicted membrane protein [Function unknown]
Probab=23.60 E-value=4.3e+02 Score=22.00 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=50.2
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773 39 PERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG 103 (150)
Q Consensus 39 ~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 103 (150)
...|+.+..+-|...+.-.++..+.+.+.+++-. ++..|.-++-.+...+...+...|..+.
T Consensus 150 ~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~ 211 (467)
T COG4267 150 LMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999988877654 5888988988898888777776666643
No 39
>PF10693 DUF2499: Protein of unknown function (DUF2499); InterPro: IPR019634 This entry represents proteins found in plants, lower eukaryotes, and bacteria and the chloroplast where it is annotated as Ycf49 or Ycf49-like. The function is not known though several members are annotated as putative membrane proteins. As the family is primarily found in phototrophic organisms it may play a role in photosynthesis.
Probab=20.58 E-value=2.5e+02 Score=18.03 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=11.0
Q ss_pred HHhcCCchhhhhhhcCC
Q 039773 134 MIGNLNNSGTALDALSI 150 (150)
Q Consensus 134 ~~~~lg~~~la~aa~~i 150 (150)
....+|+..++.|++.|
T Consensus 74 ~lTl~GN~tL~~Aa~~I 90 (90)
T PF10693_consen 74 ALTLLGNITLAIAAWRI 90 (90)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 44556777777777654
Done!