Query 039773
Match_columns 150
No_of_seqs 195 out of 1260
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 22:42:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.7 9.7E-18 3.3E-22 133.6 9.4 144 2-145 68-275 (460)
2 3mkt_A Multi antimicrobial ext 99.3 2.4E-11 8.1E-16 96.6 9.8 100 2-101 294-444 (460)
3 1jvr_A HTLV-II MA, MA, human T 22.4 80 0.0027 20.4 3.0 33 87-120 22-55 (137)
4 2khf_A PLNJ; anti-microbial, b 12.4 97 0.0033 13.8 1.1 12 109-120 3-14 (26)
5 5gds_I Hirunorm V; serine prot 9.6 71 0.0024 14.5 0.1 14 10-23 9-22 (26)
6 2jek_A RV1873; structural geno 9.1 2.6E+02 0.0088 18.7 2.8 23 9-31 53-75 (145)
7 3h90_A Ferrous-iron efflux pum 8.2 2.5E+02 0.0086 20.2 2.8 40 32-71 88-129 (283)
8 3v1a_A Computational design, M 8.1 2.6E+02 0.0089 14.9 2.1 19 6-24 14-32 (48)
9 1ihs_I Hirutonin; hydrolase(se 7.7 1.3E+02 0.0046 13.6 0.6 15 10-24 4-18 (26)
10 2k1a_A Integrin alpha-IIB; sin 6.3 3.3E+02 0.011 14.0 1.9 35 45-79 2-37 (42)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.73 E-value=9.7e-18 Score=133.64 Aligned_cols=144 Identities=17% Similarity=0.317 Sum_probs=119.9
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH--------------------------------------------HHHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE--------------------------------------------NFAYQF 37 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~ 37 (150)
+.+..+.++|++|++|+|+.++..++++.+ +..+..
T Consensus 68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 147 (460)
T 3mkt_A 68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ 147 (460)
T ss_dssp HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999888766 334556
Q ss_pred hHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh-h---CCCchhhHHHHHHHHHHHHHHHHHHHhccC-C-------
Q 039773 38 PPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR-V---QFGVIGTAISLNFPWWLLVLGLFGYVACGG-C------- 105 (150)
Q Consensus 38 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~-~---~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~-~------- 105 (150)
.++++++++|+++.+++.++++.++|++++++|++. + ++|+.|+++|+.+++++..++...+.++++ .
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (460)
T 3mkt_A 148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227 (460)
T ss_dssp HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence 677889999999999999999999999999999985 4 799999999999999999888777776542 1
Q ss_pred ---CCCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhh
Q 039773 106 ---PLTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTAL 145 (150)
Q Consensus 106 ---~~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~ 145 (150)
+.+++.+|+++|+|+|..++...+ +.+.+++.+|++++++
T Consensus 228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~ 275 (460)
T 3mkt_A 228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAA 275 (460)
T ss_dssp CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHH
T ss_pred cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 123445699999999999998888 6677889998776543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.26 E-value=2.4e-11 Score=96.58 Aligned_cols=100 Identities=14% Similarity=0.062 Sum_probs=86.1
Q ss_pred cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773 2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ 36 (150)
Q Consensus 2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 36 (150)
+.+..|.++|++|++|+|++++..+++..+ +..+.
T Consensus 294 ~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 373 (460)
T 3mkt_A 294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQ 373 (460)
T ss_dssp HHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999988887655 33556
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHh----hC-CCchhhHHHHHHHHHHHHHHHHHHHh
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYR----VQ-FGVIGTAISLNFPWWLLVLGLFGYVA 101 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~----~~-~Gv~Gaa~at~is~~~~~~~~~~~~~ 101 (150)
....+.+++.||+|.++++++++. ++|+++++++++. ++ +|+.|+++|+.+++.+..++...+++
T Consensus 374 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~ 444 (460)
T 3mkt_A 374 VVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY 444 (460)
T ss_dssp HHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999999998 9999999999987 67 99999999999999998776654443
No 3
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=22.44 E-value=80 Score=20.42 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhcc-CCCCCcccHHHHHHHHH
Q 039773 87 FPWWLLVLGLFGYVACG-GCPLTWTGFWEFIKLSA 120 (150)
Q Consensus 87 is~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~lg~ 120 (150)
...|++++=.. |-... ....+++.+|+++|+++
T Consensus 22 ~hhWLNfLQAA-yRLqPgPS~fDFhqLr~fLklAl 55 (137)
T 1jvr_A 22 THHWLNFLQAA-YRLQPGPSDFDFQQLRRFLKLAL 55 (137)
T ss_dssp HHHHHHHHHHH-HHSSCCCSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCCCCcccHHHHHHHHHHHh
Confidence 56777754322 32222 33467888999999876
No 4
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=12.37 E-value=97 Score=13.84 Aligned_cols=12 Identities=25% Similarity=0.966 Sum_probs=7.1
Q ss_pred cccHHHHHHHHH
Q 039773 109 WTGFWEFIKLSA 120 (150)
Q Consensus 109 ~~~~~~~l~lg~ 120 (150)
|+.+|.-++-|+
T Consensus 3 wknfwsslrkgf 14 (26)
T 2khf_A 3 WKNFWSSLRKGF 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 666666665554
No 5
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=9.65 E-value=71 Score=14.55 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=10.4
Q ss_pred HhhhccCccchhHH
Q 039773 10 GKAFGAKKYYMLGV 23 (150)
Q Consensus 10 sq~~Ga~~~~~~~~ 23 (150)
.|+.+.+|++++.+
T Consensus 9 Pqshn~gDfe~IPe 22 (26)
T 5gds_I 9 PESHXGGDYEEIPA 22 (26)
T ss_pred cccccCCCcccCcH
Confidence 37788888887754
No 6
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=9.09 E-value=2.6e+02 Score=18.65 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=17.6
Q ss_pred HHhhhccCccchhHHHHHHHHHH
Q 039773 9 CGKAFGAKKYYMLGVYMQRSSIE 31 (150)
Q Consensus 9 vsq~~Ga~~~~~~~~~~~~~~~~ 31 (150)
.+|.||=++.++++.|+..-++-
T Consensus 53 ~A~~YgI~sl~EA~AYL~hpvLg 75 (145)
T 2jek_A 53 LAVRYGISSLEEAQAYLQHDLLG 75 (145)
T ss_dssp HHHHTSBCSHHHHHHHHHSTTHH
T ss_pred hhhHhccCCHHHHHHHHcChHHH
Confidence 47888888888888887765543
No 7
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=8.19 E-value=2.5e+02 Score=20.22 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHhHHHHHhhcchh--HHHHHHHHHHHHHHHHHHHHHH
Q 039773 32 NFAYQFPPERFLQCQLKN--MVIAWVSLVALLLHILLSWLLV 71 (150)
Q Consensus 32 ~~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~~ni~l~~~~i 71 (150)
.+.+.+.+.+++...... ...+++..++.++|..+.+..-
T Consensus 88 ~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~ 129 (283)
T 3h90_A 88 LFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQR 129 (283)
T ss_dssp HHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544322 2346777788888887665544
No 8
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=8.12 E-value=2.6e+02 Score=14.89 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=14.6
Q ss_pred HHHHHhhhccCccchhHHH
Q 039773 6 ESLCGKAFGAKKYYMLGVY 24 (150)
Q Consensus 6 ~~lvsq~~Ga~~~~~~~~~ 24 (150)
..++-||-.+++++++...
T Consensus 14 ~~~I~qAk~~rRfdEV~~L 32 (48)
T 3v1a_A 14 HSFIHQAKAAGRMDEVRTL 32 (48)
T ss_dssp HHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHH
Confidence 4567889999999988643
No 9
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=7.67 E-value=1.3e+02 Score=13.56 Aligned_cols=15 Identities=0% Similarity=-0.037 Sum_probs=11.4
Q ss_pred HhhhccCccchhHHH
Q 039773 10 GKAFGAKKYYMLGVY 24 (150)
Q Consensus 10 sq~~Ga~~~~~~~~~ 24 (150)
.|+.+.+|.+.+.+-
T Consensus 4 Pqshn~gDFe~IPEe 18 (26)
T 1ihs_I 4 XQSHNDGDFEEIPEE 18 (26)
T ss_pred cccCCCCCCCcCCHH
Confidence 478888898887654
No 10
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=6.30 E-value=3.3e+02 Score=13.96 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=0.0
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHH-hhCCCch
Q 039773 45 CQLKNMVIAWVSLVALLLHILLSWLLVY-RVQFGVI 79 (150)
Q Consensus 45 ~~g~~~~~~~~~~~~~~~ni~l~~~~i~-~~~~Gv~ 79 (150)
++.+...|.++.+.+.+.-..+-.++++ -.+.|..
T Consensus 2 ~~~~~~vp~wiIi~s~l~GLllL~li~~~LwK~GFF 37 (42)
T 2k1a_A 2 ALEERAIPIWWVLVGVLGGLLLLTILVLAMWKVGFF 37 (42)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHcCcc
Done!