Query 039773
Match_columns 150
No_of_seqs 195 out of 1260
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 22:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039773.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039773hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 19.7 46 0.0033 20.3 3.0 35 86-121 21-56 (137)
2 d2o3aa1 c.116.1.8 (A:1-167) Un 7.2 72 0.0052 20.2 1.1 11 7-17 23-33 (167)
3 d2jeka1 a.255.1.1 (A:6-145) Hy 7.2 1.6E+02 0.012 17.9 2.8 23 8-30 47-69 (140)
4 d1mv8a2 c.2.1.6 (A:1-202) GDP- 4.7 1.8E+02 0.013 18.0 2.1 16 74-89 6-21 (202)
5 d2r1jl1 a.35.1.2 (L:3-68) P22 4.1 1.9E+02 0.014 14.2 1.5 33 37-70 31-63 (66)
6 d1j1va_ a.4.12.2 (A:) Chromoso 4.0 2.4E+02 0.018 15.3 2.0 20 7-26 50-69 (94)
7 d2jfga1 c.5.1.1 (A:1-93) UDP-N 3.5 2.5E+02 0.018 14.8 1.7 11 74-84 11-21 (93)
8 d3cuma2 c.2.1.6 (A:1-162) Hydr 2.9 3.4E+02 0.025 15.8 2.1 15 75-89 8-22 (162)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 2.9 3E+02 0.022 11.8 3.1 13 82-94 16-28 (34)
10 d1tjca_ a.118.8.1 (A:) Prolyl 2.8 3.4E+02 0.025 13.9 1.8 21 11-31 14-34 (95)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=19.66 E-value=46 Score=20.26 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhcc-CCCCCcccHHHHHHHHHH
Q 039773 86 NFPWWLLVLGLFGYVACG-GCPLTWTGFWEFIKLSAA 121 (150)
Q Consensus 86 ~is~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~lg~P 121 (150)
+...|++++=.. |-... ....|++++|+++|+++-
T Consensus 21 s~hhWLNfLQaA-yRLqPgPS~~DF~qLr~flklalk 56 (137)
T d1jvra_ 21 STHHWLNFLQAA-YRLQPGPSDFDFQQLRRFLKLALK 56 (137)
T ss_dssp THHHHHHHHHHH-HHSSCCCSTTTHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHH-HhcCCCCCcccHHHHHHHHHHHHh
Confidence 357787754432 22222 234678889999999763
No 2
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.25 E-value=72 Score=20.25 Aligned_cols=11 Identities=55% Similarity=0.857 Sum_probs=8.6
Q ss_pred HHHHhhhccCc
Q 039773 7 SLCGKAFGAKK 17 (150)
Q Consensus 7 ~lvsq~~Ga~~ 17 (150)
.|+|+++||++
T Consensus 23 aLtARAfGA~~ 33 (167)
T d2o3aa1 23 ALTARAFGAKG 33 (167)
T ss_dssp HHHHHHTTCSE
T ss_pred HHHHHHhcCCe
Confidence 47889999874
No 3
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.20 E-value=1.6e+02 Score=17.88 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=17.3
Q ss_pred HHHhhhccCccchhHHHHHHHHH
Q 039773 8 LCGKAFGAKKYYMLGVYMQRSSI 30 (150)
Q Consensus 8 lvsq~~Ga~~~~~~~~~~~~~~~ 30 (150)
-.+|.||=++.++++.++..-++
T Consensus 47 ~~a~~YaI~sl~EA~AYL~HPvL 69 (140)
T d2jeka1 47 PLAVRYGISSLEEAQAYLQHDLL 69 (140)
T ss_dssp HHHHHTSBCSHHHHHHHHHSTTH
T ss_pred HHHHHhccCCHHHHHHHHhChHh
Confidence 35788888888888888776543
No 4
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.73 E-value=1.8e+02 Score=17.96 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=12.7
Q ss_pred hCCCchhhHHHHHHHH
Q 039773 74 VQFGVIGTAISLNFPW 89 (150)
Q Consensus 74 ~~~Gv~Gaa~at~is~ 89 (150)
.|+|..|.++|..++.
T Consensus 6 iGlG~vGl~~a~~la~ 21 (202)
T d1mv8a2 6 FGLGYVGAVCAGCLSA 21 (202)
T ss_dssp ECCSTTHHHHHHHHHH
T ss_pred ECCCHhHHHHHHHHHh
Confidence 4789999888887764
No 5
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=4.10 E-value=1.9e+02 Score=14.15 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=22.5
Q ss_pred HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 039773 37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLL 70 (150)
Q Consensus 37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~ 70 (150)
..++.+.++...|.+..+..+.. .+|+..+|++
T Consensus 31 ~~i~~~e~g~~~p~~~~l~~ia~-~l~v~~~~Ll 63 (66)
T d2r1jl1 31 VAISQWERSETEPNGENLLALSK-ALQCSPDYLL 63 (66)
T ss_dssp HHHHHHHTTSSCCBHHHHHHHHH-HTTSCHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHH-HhCCCHHHHh
Confidence 45667788888877766655444 5688877765
No 6
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=4.02 E-value=2.4e+02 Score=15.30 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=12.6
Q ss_pred HHHHhhhccCccchhHHHHH
Q 039773 7 SLCGKAFGAKKYYMLGVYMQ 26 (150)
Q Consensus 7 ~lvsq~~Ga~~~~~~~~~~~ 26 (150)
+-+|+.+|.+|+.-+-...+
T Consensus 50 ~~Ig~~fg~rdHsTV~~a~k 69 (94)
T d1j1va_ 50 PEIGDAFGGRDHTTVLHACR 69 (94)
T ss_dssp HHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHH
Confidence 34678888777765544333
No 7
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=3.50 E-value=2.5e+02 Score=14.75 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=6.9
Q ss_pred hCCCchhhHHH
Q 039773 74 VQFGVIGTAIS 84 (150)
Q Consensus 74 ~~~Gv~Gaa~a 84 (150)
.|+|..|.+.|
T Consensus 11 iGlG~sG~s~a 21 (93)
T d2jfga1 11 IGLGLTGLSCV 21 (93)
T ss_dssp ECCSHHHHHHH
T ss_pred EeECHHHHHHH
Confidence 46777776543
No 8
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.93 E-value=3.4e+02 Score=15.82 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=11.7
Q ss_pred CCCchhhHHHHHHHH
Q 039773 75 QFGVIGTAISLNFPW 89 (150)
Q Consensus 75 ~~Gv~Gaa~at~is~ 89 (150)
|+|..|.++|..+.+
T Consensus 8 GlG~MG~~iA~~L~~ 22 (162)
T d3cuma2 8 GLGHMGAPMATNLLK 22 (162)
T ss_dssp CCSTTHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHH
Confidence 789999888776654
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=2.85 E-value=3e+02 Score=11.80 Aligned_cols=13 Identities=0% Similarity=0.271 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 039773 82 AISLNFPWWLLVL 94 (150)
Q Consensus 82 a~at~is~~~~~~ 94 (150)
++|.+++..+.++
T Consensus 16 wlafslamlfvfi 28 (34)
T d1xmeb2 16 WLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 10
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.78 E-value=3.4e+02 Score=13.93 Aligned_cols=21 Identities=19% Similarity=0.456 Sum_probs=15.7
Q ss_pred hhhccCccchhHHHHHHHHHH
Q 039773 11 KAFGAKKYYMLGVYMQRSSIE 31 (150)
Q Consensus 11 q~~Ga~~~~~~~~~~~~~~~~ 31 (150)
.++-.+|++++..++.+++-+
T Consensus 14 ~~~~~g~y~~A~~~~~~Al~~ 34 (95)
T d1tjca_ 14 VAYTEADYYHTELWMEQALRQ 34 (95)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 456677888888888888754
Done!