BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039774
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 121/257 (47%), Gaps = 27/257 (10%)
Query: 71 LRPKSKTRPVSDV-----------VPTIDLSGVDSDD--LRPTIVEKIACASRELGFFQV 117
+RPK + ++DV VPTIDL ++SDD +R +E++ AS + G +
Sbjct: 22 IRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL 81
Query: 118 VNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGV-SYISNIDLFHSKAASWRDT 176
+NHGI +++ER+ +A + F E K + T + Y S + S W D
Sbjct: 82 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDY 141
Query: 177 LQIRLGLTEPELE-------EVPEICRKEAVEWNHHVKQXXXXXXXXXXXXXXXKTDKL- 228
L PE + + P + E+ ++ + D+L
Sbjct: 142 F---FHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 198
Query: 229 KENTFLEGRM--MVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVD 286
KE LE + M +YYP CPQP+L +G+ +HTD LT +L + GLQ+ + +WV
Sbjct: 199 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVT 258
Query: 287 VKPVPGALVINIGDILQ 303
K VP ++V++IGD L+
Sbjct: 259 AKCVPDSIVMHIGDTLE 275
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 121/257 (47%), Gaps = 27/257 (10%)
Query: 71 LRPKSKTRPVSDV-----------VPTIDLSGVDSDD--LRPTIVEKIACASRELGFFQV 117
+RPK + ++DV VPTIDL ++SDD +R +E++ AS + G +
Sbjct: 23 IRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL 82
Query: 118 VNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGV-SYISNIDLFHSKAASWRDT 176
+NHGI +++ER+ +A + F E K + T + Y S + S W D
Sbjct: 83 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDY 142
Query: 177 LQIRLGLTEPELE-------EVPEICRKEAVEWNHHVKQXXXXXXXXXXXXXXXKTDKL- 228
L PE + + P + E+ ++ + D+L
Sbjct: 143 F---FHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 199
Query: 229 KENTFLEGRM--MVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVD 286
KE LE + M +YYP CPQP+L +G+ +HTD LT +L + GLQ+ + +WV
Sbjct: 200 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVT 259
Query: 287 VKPVPGALVINIGDILQ 303
K VP ++V++IGD L+
Sbjct: 260 AKCVPDSIVMHIGDTLE 276
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 27/257 (10%)
Query: 71 LRPKSKTRPVSDV-----------VPTIDLSGVDSDD--LRPTIVEKIACASRELGFFQV 117
+RPK + ++DV VPTIDL ++SDD +R +E++ AS + G +
Sbjct: 23 IRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHL 82
Query: 118 VNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGV-SYISNIDLFHSKAASWRDT 176
+NHGI ++ ER+ +A + F E K + T + Y S + S W D
Sbjct: 83 INHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDY 142
Query: 177 LQIRLGLTEPELE-------EVPEICRKEAVEWNHHVKQXXXXXXXXXXXXXXXKTDKL- 228
L PE + + P + E+ ++ + D+L
Sbjct: 143 F---FHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 199
Query: 229 KENTFLEGRMMVG--HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVD 286
KE LE ++ +YYP CPQP+L +G+ +HTD LT +L + GLQ+ + +WV
Sbjct: 200 KEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLFYEGKWVT 259
Query: 287 VKPVPGALVINIGDILQ 303
K VP ++V +IGD L+
Sbjct: 260 AKCVPDSIVXHIGDTLE 276
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 108/236 (45%), Gaps = 35/236 (14%)
Query: 85 PTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEI 144
P I L V+ + R E I A GFF++VNHGI EV + + + KG +++ E
Sbjct: 5 PIISLDKVNGVE-RAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQ 63
Query: 145 K-APVYRRENTKGV-SYISNIDLFHSKAASWRDTLQIRLGLTEPELEEVPEICRKEAVEW 202
+ + + +GV + +++ D W T ++ L + EVP++
Sbjct: 64 RFKELVASKALEGVQAEVTDXD--------WESTFFLK-HLPISNISEVPDL-------- 106
Query: 203 NHHVKQXXXXXXXXXXXXXXXKTDKLKENTFLE-GRMMVGHY-------------YPYCP 248
+ ++ D L EN LE G + Y YP CP
Sbjct: 107 DEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCP 166
Query: 249 QPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQ 303
+PDL G+ +HTD G + +L QDDK GLQ+ +W+DV P ++V+N+GD L+
Sbjct: 167 KPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLE 222
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 243 YYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQI-KHGEEWVDVKPVPGALVINIGDI 301
+YP P+ V +H D +T+LL ++GGL++ +W+ + P PG LVINIGD
Sbjct: 175 HYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDX 234
Query: 302 LQ 303
L+
Sbjct: 235 LE 236
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 84 VPTIDLSGVDSDD--LRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFH 138
VP ID+S + DD + + ++I ASR+ GFF VNHGI V +R+ + K FH
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINV---QRLSQKTKEFH 62
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 84 VPTIDLSGVDSDD--LRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFH 138
VP ID+S + DD + + ++I ASR+ GFF VNHGI V +R+ + K FH
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINV---QRLSQKTKEFH 62
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 238 MMVGHYYPYCPQPDL-TVGITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALV 295
+ + HY P + + +H D +T+L ++ GLQ+K + W+DV G ++
Sbjct: 152 LRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNII 211
Query: 296 INIGDILQ 303
INIGD LQ
Sbjct: 212 INIGDXLQ 219
>pdb|3VEG|A Chain A, Rhodococcus Jostii Rha1 Dypb R244l Variant In Complex With
Heme
pdb|3VEG|B Chain B, Rhodococcus Jostii Rha1 Dypb R244l Variant In Complex With
Heme
pdb|3VEG|C Chain C, Rhodococcus Jostii Rha1 Dypb R244l Variant In Complex With
Heme
Length = 353
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 63 HPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKI--------ACASRELGF 114
H P +A L P++ P S + L DSDD R T+ + I A REL
Sbjct: 3 HMPGPVARLAPQAVLTPPSAASLFLVLVAGDSDDDRATVCDVISGIDGPLKAVGFRELAG 62
Query: 115 FQVVNHGIGVEVLERMVRAIKGFHEQP-PEIKAPVYRRENTKGVSYISNIDLFHSKAASW 173
G+G + +R+ + K H P + PV+ +T G LFH KAA
Sbjct: 63 SLSCVVGVGAQFWDRVSASSKPAHLHPFVPLSGPVHSAPSTPGDL------LFHIKAA-- 114
Query: 174 RDTLQIRLG 182
R L LG
Sbjct: 115 RKDLCFELG 123
>pdb|3VED|A Chain A, Rhodococcus Jostii Rha1 Dypb D153h Variant In Complex With
Heme
pdb|3VED|B Chain B, Rhodococcus Jostii Rha1 Dypb D153h Variant In Complex With
Heme
pdb|3VED|C Chain C, Rhodococcus Jostii Rha1 Dypb D153h Variant In Complex With
Heme
Length = 353
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 63 HPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKI--------ACASRELGF 114
H P +A L P++ P S + L DSDD R T+ + I A REL
Sbjct: 3 HMPGPVARLAPQAVLTPPSAASLFLVLVAGDSDDDRATVCDVISGIDGPLKAVGFRELAG 62
Query: 115 FQVVNHGIGVEVLERMVRAIKGFHEQP-PEIKAPVYRRENTKGVSYISNIDLFHSKAASW 173
G+G + +R+ + K H P + PV+ +T G LFH KAA
Sbjct: 63 SLSCVVGVGAQFWDRVSASSKPAHLHPFVPLSGPVHSAPSTPGDL------LFHIKAA-- 114
Query: 174 RDTLQIRLG 182
R L LG
Sbjct: 115 RKDLCFELG 123
>pdb|3VEF|A Chain A, Rhodococcus Jostii Rha1 Dypb N246h Variant In Complex With
Heme
pdb|3VEF|B Chain B, Rhodococcus Jostii Rha1 Dypb N246h Variant In Complex With
Heme
pdb|3VEF|C Chain C, Rhodococcus Jostii Rha1 Dypb N246h Variant In Complex With
Heme
Length = 353
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 63 HPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKI--------ACASRELGF 114
H P +A L P++ P S + L DSDD R T+ + I A REL
Sbjct: 3 HMPGPVARLAPQAVLTPPSAASLFLVLVAGDSDDDRATVCDVISGIDGPLKAVGFRELAG 62
Query: 115 FQVVNHGIGVEVLERMVRAIKGFHEQP-PEIKAPVYRRENTKGVSYISNIDLFHSKAASW 173
G+G + +R+ + K H P + PV+ +T G LFH KAA
Sbjct: 63 SLSCVVGVGAQFWDRVSASSKPAHLHPFVPLSGPVHSAPSTPGDL------LFHIKAA-- 114
Query: 174 RDTLQIRLG 182
R L LG
Sbjct: 115 RKDLCFELG 123
>pdb|3QNR|A Chain A, Dypb From Rhodococcus Jostii Rha1, Crystal Form 1
pdb|3QNR|B Chain B, Dypb From Rhodococcus Jostii Rha1, Crystal Form 1
pdb|3QNR|C Chain C, Dypb From Rhodococcus Jostii Rha1, Crystal Form 1
pdb|3QNS|A Chain A, Dypb From Rhodococcus Jostii Rha1, Crystal Form 2
Length = 353
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 63 HPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKI--------ACASRELGF 114
H P +A L P++ P S + L DSDD R T+ + I A REL
Sbjct: 3 HMPGPVARLAPQAVLTPPSAASLFLVLVAGDSDDDRATVCDVISGIDGPLKAVGFRELAG 62
Query: 115 FQVVNHGIGVEVLERMVRAIKGFHEQP-PEIKAPVYRRENTKGVSYISNIDLFHSKAASW 173
G+G + +R+ + K H P + PV+ +T G LFH KAA
Sbjct: 63 SLSCVVGVGAQFWDRVSASSKPAHLHPFVPLSGPVHSAPSTPGDL------LFHIKAA-- 114
Query: 174 RDTLQIRLG 182
R L LG
Sbjct: 115 RKDLCFELG 123
>pdb|3VEE|A Chain A, Rhodococcus Jostii Rha1 Dypb N246a Variant In Complex With
Heme
pdb|3VEE|B Chain B, Rhodococcus Jostii Rha1 Dypb N246a Variant In Complex With
Heme
pdb|3VEE|C Chain C, Rhodococcus Jostii Rha1 Dypb N246a Variant In Complex With
Heme
pdb|4HOV|A Chain A, Dypb N246a In Complex With Manganese
pdb|4HOV|B Chain B, Dypb N246a In Complex With Manganese
pdb|4HOV|C Chain C, Dypb N246a In Complex With Manganese
Length = 353
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 63 HPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKI--------ACASRELGF 114
H P +A L P++ P S + L DSDD R T+ + I A REL
Sbjct: 3 HMPGPVARLAPQAVLTPPSAASLFLVLVAGDSDDDRATVCDVISGIDGPLKAVGFRELAG 62
Query: 115 FQVVNHGIGVEVLERMVRAIKGFHEQP-PEIKAPVYRRENTKGVSYISNIDLFHSKAASW 173
G+G + +R+ + K H P + PV+ +T G LFH KAA
Sbjct: 63 SLSCVVGVGAQFWDRVSASSKPAHLHPFVPLSGPVHSAPSTPGDL------LFHIKAA-- 114
Query: 174 RDTLQIRLG 182
R L LG
Sbjct: 115 RKDLCFELG 123
>pdb|3VEC|A Chain A, Rhodococcus Jostii Rha1 Dypb D153a Variant In Complex With
Heme
pdb|3VEC|B Chain B, Rhodococcus Jostii Rha1 Dypb D153a Variant In Complex With
Heme
pdb|3VEC|C Chain C, Rhodococcus Jostii Rha1 Dypb D153a Variant In Complex With
Heme
Length = 353
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 63 HPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKI--------ACASRELGF 114
H P +A L P++ P S + L DSDD R T+ + I A REL
Sbjct: 3 HMPGPVARLAPQAVLTPPSAASLFLVLVAGDSDDDRATVCDVISGIDGPLKAVGFRELAG 62
Query: 115 FQVVNHGIGVEVLERMVRAIKGFHEQP-PEIKAPVYRRENTKGVSYISNIDLFHSKAASW 173
G+G + +R+ + K H P + PV+ +T G LFH KAA
Sbjct: 63 SLSCVVGVGAQFWDRVSASSKPAHLHPFVPLSGPVHSAPSTPGDL------LFHIKAA-- 114
Query: 174 RDTLQIRLG 182
R L LG
Sbjct: 115 RKDLCFELG 123
>pdb|3IRS|A Chain A, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3IRS|B Chain B, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3IRS|C Chain C, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|A Chain A, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|B Chain B, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|C Chain C, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|D Chain D, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|E Chain E, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|F Chain F, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|G Chain G, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|H Chain H, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|I Chain I, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|J Chain J, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|K Chain K, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|L Chain L, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
Length = 291
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 231 NTFLEGRMMVGHYYPYCPQPDLT 253
N+FL RM+ G YP CP + T
Sbjct: 231 NSFLADRMLFGTAYPMCPLKEYT 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,822,417
Number of Sequences: 62578
Number of extensions: 337893
Number of successful extensions: 689
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 26
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)