Query 039774
Match_columns 303
No_of_seqs 297 out of 2009
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:03:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02904 oxidoreductase 100.0 2.9E-65 6.3E-70 480.0 23.3 263 37-303 7-274 (357)
2 PLN02947 oxidoreductase 100.0 8E-65 1.7E-69 479.1 24.9 256 44-303 26-291 (374)
3 PLN02216 protein SRG1 100.0 3.4E-64 7.4E-69 473.0 24.0 256 44-303 15-277 (357)
4 PLN02758 oxidoreductase, 2OG-F 100.0 4E-64 8.8E-69 473.2 22.6 257 43-303 14-279 (361)
5 PLN02912 oxidoreductase, 2OG-F 100.0 7.4E-63 1.6E-67 462.5 22.7 255 44-303 6-263 (348)
6 PLN02254 gibberellin 3-beta-di 100.0 2E-62 4.4E-67 460.6 19.4 243 50-303 23-277 (358)
7 PLN02393 leucoanthocyanidin di 100.0 9.2E-62 2E-66 457.6 22.3 259 41-303 10-280 (362)
8 PLN03178 leucoanthocyanidin di 100.0 5.5E-62 1.2E-66 459.0 20.7 256 45-303 7-277 (360)
9 PLN02639 oxidoreductase, 2OG-F 100.0 2.4E-61 5.2E-66 451.2 22.6 249 47-303 3-257 (337)
10 PLN02515 naringenin,2-oxogluta 100.0 6.9E-61 1.5E-65 450.3 21.7 247 52-303 10-263 (358)
11 PLN02276 gibberellin 20-oxidas 100.0 6.6E-61 1.4E-65 451.6 20.9 242 55-303 18-272 (361)
12 PLN00417 oxidoreductase, 2OG-F 100.0 3.2E-60 7E-65 444.7 23.0 254 45-303 8-270 (348)
13 PLN02704 flavonol synthase 100.0 3.7E-60 8.1E-65 442.8 22.1 252 45-303 5-265 (335)
14 KOG0143 Iron/ascorbate family 100.0 1.8E-59 3.9E-64 434.3 21.3 222 81-303 15-244 (322)
15 PLN02750 oxidoreductase, 2OG-F 100.0 2.8E-58 6.1E-63 431.7 22.3 241 55-303 2-261 (345)
16 PLN02997 flavonol synthase 100.0 1.6E-56 3.5E-61 415.8 21.5 214 81-303 30-249 (325)
17 PTZ00273 oxidase reductase; Pr 100.0 3.9E-56 8.5E-61 413.8 18.8 222 82-303 4-245 (320)
18 PLN02299 1-aminocyclopropane-1 100.0 7.2E-56 1.6E-60 411.1 19.5 215 81-303 4-225 (321)
19 COG3491 PcbC Isopenicillin N s 100.0 1.1E-55 2.3E-60 394.3 16.8 222 82-303 4-241 (322)
20 PLN02984 oxidoreductase, 2OG-F 100.0 5.3E-55 1.1E-59 407.7 21.5 214 82-303 37-266 (341)
21 PLN03002 oxidoreductase, 2OG-F 100.0 4.7E-55 1E-59 407.8 19.2 216 82-303 13-254 (332)
22 PLN02485 oxidoreductase 100.0 5.9E-55 1.3E-59 407.2 18.6 222 82-303 6-256 (329)
23 PLN02403 aminocyclopropanecarb 100.0 3.2E-54 6.9E-59 396.7 19.2 212 83-303 2-221 (303)
24 PLN02156 gibberellin 2-beta-di 100.0 6.5E-54 1.4E-58 399.5 20.0 211 82-303 25-247 (335)
25 PLN02365 2-oxoglutarate-depend 100.0 6.2E-53 1.3E-57 388.6 18.0 205 82-303 4-218 (300)
26 PLN03001 oxidoreductase, 2OG-F 100.0 3.6E-43 7.9E-48 317.2 12.8 174 130-303 1-182 (262)
27 PF14226 DIOX_N: non-haem diox 99.9 4.6E-25 9.9E-30 175.5 5.9 106 84-193 1-115 (116)
28 PLN03176 flavanone-3-hydroxyla 99.9 8.6E-24 1.9E-28 169.1 9.9 111 46-163 6-117 (120)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.5 3.3E-15 7.1E-20 115.1 4.1 64 237-303 2-67 (98)
30 PF13640 2OG-FeII_Oxy_3: 2OG-F 87.3 0.39 8.5E-06 36.3 1.9 55 239-299 1-76 (100)
31 smart00702 P4Hc Prolyl 4-hydro 83.7 5.3 0.00011 33.5 7.4 79 209-298 60-152 (178)
32 PRK05467 Fe(II)-dependent oxyg 67.4 33 0.00071 30.4 8.0 29 273-301 129-157 (226)
33 PRK08130 putative aldolase; Va 63.5 10 0.00022 33.1 4.0 36 83-122 127-162 (213)
34 PRK08333 L-fuculose phosphate 62.0 11 0.00023 32.1 3.8 36 83-122 120-155 (184)
35 COG2140 Thermophilic glucose-6 53.6 31 0.00068 30.1 5.3 61 235-300 89-151 (209)
36 PF07350 DUF1479: Protein of u 51.6 12 0.00026 36.2 2.6 56 82-142 48-103 (416)
37 PRK05874 L-fuculose-phosphate 51.5 19 0.00041 31.6 3.7 37 83-123 127-163 (217)
38 TIGR00568 alkb DNA alkylation 42.4 94 0.002 26.2 6.4 58 238-301 96-162 (169)
39 PRK08660 L-fuculose phosphate 42.4 35 0.00077 28.8 3.9 35 83-122 115-149 (181)
40 PRK06833 L-fuculose phosphate 42.1 32 0.0007 30.0 3.7 36 83-122 124-159 (214)
41 PF13532 2OG-FeII_Oxy_2: 2OG-F 41.0 94 0.002 26.0 6.4 58 238-301 98-164 (194)
42 PF00596 Aldolase_II: Class II 41.0 18 0.00038 30.5 1.8 37 82-122 122-159 (184)
43 PRK06755 hypothetical protein; 40.3 29 0.00063 30.3 3.1 36 83-122 136-171 (209)
44 PF01471 PG_binding_1: Putativ 39.5 41 0.00088 22.3 3.1 44 100-143 3-46 (57)
45 cd00379 Ribosomal_L10_P0 Ribos 38.6 1E+02 0.0022 25.0 6.0 39 98-136 3-42 (155)
46 PRK03634 rhamnulose-1-phosphat 38.4 37 0.00081 30.9 3.6 37 83-123 179-215 (274)
47 PRK08087 L-fuculose phosphate 38.3 42 0.00091 29.3 3.8 36 83-122 122-157 (215)
48 TIGR02624 rhamnu_1P_ald rhamnu 36.8 38 0.00083 30.8 3.4 36 83-122 177-212 (270)
49 PF06820 Phage_fiber_C: Putati 36.6 21 0.00046 24.5 1.3 36 254-289 16-62 (64)
50 TIGR02409 carnitine_bodg gamma 35.5 51 0.0011 31.2 4.2 53 82-140 108-160 (366)
51 COG1402 Uncharacterized protei 33.9 1.1E+02 0.0023 27.6 5.7 50 86-139 80-132 (250)
52 PRK06357 hypothetical protein; 33.8 60 0.0013 28.4 4.1 36 83-122 130-171 (216)
53 PRK15401 alpha-ketoglutarate-d 33.2 2.2E+02 0.0047 25.0 7.4 57 239-301 118-183 (213)
54 PF03460 NIR_SIR_ferr: Nitrite 32.2 58 0.0013 22.5 3.1 38 99-136 23-68 (69)
55 PRK06557 L-ribulose-5-phosphat 31.6 50 0.0011 28.9 3.2 37 83-123 130-168 (221)
56 TIGR03328 salvage_mtnB methylt 30.7 65 0.0014 27.5 3.7 35 83-122 126-163 (193)
57 PF03668 ATP_bind_2: P-loop AT 30.0 68 0.0015 29.5 3.8 30 105-136 17-46 (284)
58 TIGR01086 fucA L-fuculose phos 29.8 61 0.0013 28.2 3.4 36 83-122 121-156 (214)
59 PLN00052 prolyl 4-hydroxylase; 29.7 2.3E+02 0.005 26.4 7.4 17 120-136 60-77 (310)
60 PRK05834 hypothetical protein; 28.9 61 0.0013 27.9 3.2 38 83-122 121-160 (194)
61 PRK06661 hypothetical protein; 27.8 68 0.0015 28.4 3.4 24 99-122 137-160 (231)
62 cd05796 Ribosomal_P0_like Ribo 27.4 1.5E+02 0.0033 24.6 5.3 39 98-136 3-42 (163)
63 TIGR00370 conserved hypothetic 27.3 1.1E+02 0.0024 26.6 4.5 47 250-302 150-199 (202)
64 PF01361 Tautomerase: Tautomer 26.9 78 0.0017 21.2 2.9 25 204-228 14-38 (60)
65 PRK06754 mtnB methylthioribulo 26.9 70 0.0015 27.8 3.3 34 83-122 137-172 (208)
66 cd00398 Aldolase_II Class II A 26.6 51 0.0011 28.5 2.3 39 82-122 121-159 (209)
67 cd05795 Ribosomal_P0_L10e Ribo 26.2 1.6E+02 0.0035 24.8 5.3 39 98-136 3-42 (175)
68 PRK01964 4-oxalocrotonate taut 26.0 82 0.0018 21.5 2.9 25 204-228 15-39 (64)
69 PF08699 DUF1785: Domain of un 25.6 82 0.0018 21.0 2.7 24 274-298 19-42 (52)
70 cd05797 Ribosomal_L10 Ribosoma 25.4 1.8E+02 0.0039 23.8 5.4 39 98-136 5-44 (157)
71 PF06560 GPI: Glucose-6-phosph 25.1 1E+02 0.0022 26.4 3.9 38 263-301 92-136 (182)
72 PRK02220 4-oxalocrotonate taut 24.3 92 0.002 20.8 2.9 25 204-228 15-39 (61)
73 PRK07490 hypothetical protein; 22.6 92 0.002 27.8 3.3 25 98-122 145-169 (245)
74 PRK02289 4-oxalocrotonate taut 22.4 93 0.002 21.0 2.6 25 204-228 15-39 (60)
75 cd00491 4Oxalocrotonate_Tautom 22.4 1E+02 0.0022 20.2 2.7 25 204-228 14-38 (58)
76 PRK00745 4-oxalocrotonate taut 22.3 1.1E+02 0.0024 20.4 3.0 25 204-228 15-39 (62)
77 TIGR00013 taut 4-oxalocrotonat 22.2 1E+02 0.0022 20.7 2.8 25 204-228 15-39 (63)
78 PF10055 DUF2292: Uncharacteri 21.9 64 0.0014 20.2 1.5 21 260-281 13-33 (38)
79 TIGR02367 PylS pyrrolysyl-tRNA 21.8 2.8E+02 0.0062 27.3 6.5 77 28-127 192-272 (453)
80 PRK00099 rplJ 50S ribosomal pr 21.6 2.7E+02 0.0059 23.2 5.8 39 98-136 6-45 (172)
81 PF11243 DUF3045: Protein of u 21.3 78 0.0017 23.2 2.0 21 103-123 36-56 (89)
82 PF08823 PG_binding_2: Putativ 20.5 1.5E+02 0.0032 21.4 3.4 36 99-134 15-50 (74)
83 COG0325 Predicted enzyme with 20.5 2.9E+02 0.0062 24.6 5.8 42 96-137 100-152 (228)
84 PF11876 DUF3396: Protein of u 20.5 33 0.00072 30.0 -0.0 41 261-301 106-152 (208)
85 PF00046 Homeobox: Homeobox do 20.4 55 0.0012 21.5 1.1 38 195-232 11-48 (57)
No 1
>PLN02904 oxidoreductase
Probab=100.00 E-value=2.9e-65 Score=479.99 Aligned_cols=263 Identities=28% Similarity=0.487 Sum_probs=223.5
Q ss_pred hhhcccccchHHHHhcCCCCCCccccCCCCCCCCCCC-CCCCCCCCCCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeE
Q 039774 37 KRFDESKVGVKGLVDLGVTAIPRFFIHPPATLADLRP-KSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFF 115 (303)
Q Consensus 37 ~~~~~~~~~v~~l~~~~~~~vP~~f~~p~~~~~~~~~-~~~~~~~~~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF 115 (303)
..||++++|||+|+++|+.+||++|++|++++|.... ...+ ...||||||+.+.++..|.+++++|++||++||||
T Consensus 7 ~~~~~~~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~---~~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf 83 (357)
T PLN02904 7 SVLDDSFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTS---TITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFF 83 (357)
T ss_pred chhhccccchHHHHhcCCCCCCHHhCCCchhccccccccccc---CCCCCEEECcccCCchhHHHHHHHHHHHHHHCceE
Confidence 4689999999999999999999999999999885211 1112 35799999998875556788999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCCCCCccch---
Q 039774 116 QVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTEPELEEVP--- 192 (303)
Q Consensus 116 ~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~~~p~~~P--- 192 (303)
||+||||+.++++++++++++||+||.|+|+++......+..||+...........+|+|.+.....|...+++.||
T Consensus 84 ~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~ 163 (357)
T PLN02904 84 QVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNP 163 (357)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcccccccCcccc
Confidence 99999999999999999999999999999999865443344566543332334556899987654444333356666
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCC
Q 039774 193 EICRKEAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDD 272 (303)
Q Consensus 193 ~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~ 272 (303)
+.||+++++|+++|.+|+.+|+++||++|||++++|.+.+....+.||+||||+||+++.++|+++|||+|+||||+||
T Consensus 164 p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~qd- 242 (357)
T PLN02904 164 PCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQS- 242 (357)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccEEEeeecCCCCCcccccCCcCccCCCceEEEecC-
Confidence 6899999999999999999999999999999999999877666678999999999999999999999999999999997
Q ss_pred CCCceEEeC-CeEEEeccCCCcEEEeeCccCC
Q 039774 273 KGGLQIKHG-EEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 273 ~~GLQV~~~-g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
++||||+++ |+|++|+|+||+|||||||+||
T Consensus 243 ~~GLQV~~~~g~Wi~V~p~pgalVVNiGD~Le 274 (357)
T PLN02904 243 SQGLQIMDCNKNWVCVPYIEGALIVQLGDQVE 274 (357)
T ss_pred CCeeeEEeCCCCEEECCCCCCeEEEEccHHHH
Confidence 589999985 8999999999999999999986
No 2
>PLN02947 oxidoreductase
Probab=100.00 E-value=8e-65 Score=479.13 Aligned_cols=256 Identities=37% Similarity=0.593 Sum_probs=219.1
Q ss_pred cchHHHHhcCCCCCCccccCCCCCCCCCCCC--C--CCCCCCCCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEc
Q 039774 44 VGVKGLVDLGVTAIPRFFIHPPATLADLRPK--S--KTRPVSDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVN 119 (303)
Q Consensus 44 ~~v~~l~~~~~~~vP~~f~~p~~~~~~~~~~--~--~~~~~~~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~n 119 (303)
+|||.|+++|+++||++|++|++++|..... . .. ..+||||||+.+.+ .++.+++++|++||++||||||+|
T Consensus 26 ~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~---~~~iPvIDls~l~~-~~~~~~~~~l~~Ac~~~GFF~v~n 101 (374)
T PLN02947 26 KGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASG---NLKLPVIDLAELRG-SNRPHVLATLAAACREYGFFQVVN 101 (374)
T ss_pred cCHHHHHhcCCCcCCHHhcCCchhccccccccccccCC---CCCCCeEECcccCC-ccHHHHHHHHHHHHHHCcEEEEEc
Confidence 5999999999999999999999998752110 0 12 35799999998863 457889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCCCCCccch---hhhh
Q 039774 120 HGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTEPELEEVP---EICR 196 (303)
Q Consensus 120 HGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~~~p~~~P---~~fr 196 (303)
||||.++++++++.+++||+||.|+|+++...+.....||+..+....+...+|+|.+.+...|....++.|| ++||
T Consensus 102 HGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr 181 (374)
T PLN02947 102 HGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLR 181 (374)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCccchHHHH
Confidence 9999999999999999999999999999865443445678655443445668999998876555433345565 6899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCC---hhhhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCCC
Q 039774 197 KEAVEWNHHVKQLGELLFGLLCEGLGLK---TDKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDK 273 (303)
Q Consensus 197 ~~~~~y~~~~~~l~~~Ll~~la~~Lgl~---~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~ 273 (303)
+++++|+++|.+|+.+|+++||++|||+ .++|.+.+....+.+|+||||+||+|+.++|+++|||+|+||||+||++
T Consensus 182 ~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~v 261 (374)
T PLN02947 182 KVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDEV 261 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecCC
Confidence 9999999999999999999999999996 4566665555567899999999999999999999999999999999999
Q ss_pred CCceEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 274 GGLQIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 274 ~GLQV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
+||||+++|+|++|+|+||+|||||||+||
T Consensus 262 ~GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq 291 (374)
T PLN02947 262 EGLQIMHAGRWVTVEPIPGSFVVNVGDHLE 291 (374)
T ss_pred CCeeEeECCEEEeCCCCCCeEEEEeCceee
Confidence 999999999999999999999999999997
No 3
>PLN02216 protein SRG1
Probab=100.00 E-value=3.4e-64 Score=473.04 Aligned_cols=256 Identities=31% Similarity=0.531 Sum_probs=217.0
Q ss_pred cchHHHHhc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 44 VGVKGLVDL-GVTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 44 ~~v~~l~~~-~~~~vP~~f~~p~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
..|+.|+.+ ++++||++|++|++++|.....+.. ..+||||||+.+.++..+++++++|++||++||||||+||||
T Consensus 15 ~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~---~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 91 (357)
T PLN02216 15 PSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGL---SSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGI 91 (357)
T ss_pred hhHHHHHhcCCCCCCCHhhCcCcccCCccccccCc---CCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCC
Confidence 458999887 8999999999999998742111111 247999999988644445679999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCC-CCCccch---hhhhhh
Q 039774 123 GVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTE-PELEEVP---EICRKE 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~-~~p~~~P---~~fr~~ 198 (303)
|.++++++++.+++||+||.|+|+++... .....||+........+..+|+|.|.+...|.. ..++.|| +.||++
T Consensus 92 ~~~li~~~~~~~~~FF~LP~eeK~k~~~~-~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~ 170 (357)
T PLN02216 92 DSSFLDKVKSEIQDFFNLPMEEKKKLWQR-PGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDT 170 (357)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHhhhcC-CCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHH
Confidence 99999999999999999999999998543 345678876543334556899999987655532 2334444 689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccC-CCceeeeecCCCCCCCCCcccccccccCCceEEEec-CCCCCc
Q 039774 199 AVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFL-EGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQ-DDKGGL 276 (303)
Q Consensus 199 ~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~-~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~q-d~~~GL 276 (303)
+++|+++|.+|+.+|+++||++|||++++|.+.+.. ..+.||+||||||++++.++|+++|||+|+||||+| ++++||
T Consensus 171 ~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GL 250 (357)
T PLN02216 171 LETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGL 250 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCce
Confidence 999999999999999999999999999999987754 346899999999999999999999999999999999 579999
Q ss_pred eEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 277 QIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 277 QV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
||+++|+|++|+|+||+|||||||+||
T Consensus 251 QV~~~g~Wi~V~p~pgalvVNiGD~L~ 277 (357)
T PLN02216 251 QIKKDGKWVSVKPLPNALVVNVGDILE 277 (357)
T ss_pred eEEECCEEEECCCCCCeEEEEcchhhH
Confidence 999999999999999999999999997
No 4
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4e-64 Score=473.19 Aligned_cols=257 Identities=30% Similarity=0.443 Sum_probs=220.9
Q ss_pred ccchHHHHhcCCCCCCccccCCCCCCCCCCC-CCCCCCCCCCcceeeCCCCCC--CCChHHHHHHHHHHHhhcCeEEEEc
Q 039774 43 KVGVKGLVDLGVTAIPRFFIHPPATLADLRP-KSKTRPVSDVVPTIDLSGVDS--DDLRPTIVEKIACASRELGFFQVVN 119 (303)
Q Consensus 43 ~~~v~~l~~~~~~~vP~~f~~p~~~~~~~~~-~~~~~~~~~~iPvIDls~l~~--~~~r~~~~~~l~~A~~~~GFF~v~n 119 (303)
.++||.|+++|+++||++|++|++++|.... .... ..+||||||+.+.+ ..++.+++++|++||++||||||+|
T Consensus 14 ~~~~~~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~---~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~n 90 (361)
T PLN02758 14 IDDVQELRKSKPTTVPERFIRDMDERPDLASDTLHA---PDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVIN 90 (361)
T ss_pred cccHHHHHhcCCCCCCHHHcCCchhccccccccccC---CCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEec
Confidence 3579999999999999999999999875311 1112 35799999998862 2345667999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCC-CCCccch---hhh
Q 039774 120 HGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTE-PELEEVP---EIC 195 (303)
Q Consensus 120 HGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~-~~p~~~P---~~f 195 (303)
|||+.++++++++++++||+||.|+|+++.. .+...+||+..+........+|+|.|.+...|.. ..++.|| +.|
T Consensus 91 HGi~~~l~~~~~~~~~~FF~LP~eeK~k~~~-~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~f 169 (361)
T PLN02758 91 HGIELELLEEIEKVAREFFMLPLEEKQKYPM-APGTVQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARF 169 (361)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHhcc-cCCCccccCcccccccccccCeeEEEEeeccCccccccccCccccHHH
Confidence 9999999999999999999999999999854 3345679976543334556799999988766542 3456676 579
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCC--C
Q 039774 196 RKEAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDD--K 273 (303)
Q Consensus 196 r~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~--~ 273 (303)
|+++++|+++|.+|+.+|+++|+++|||++++|.+.+....+.||+||||+|++++..+|+++|||+|+||||+||+ +
T Consensus 170 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~v 249 (361)
T PLN02758 170 SETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKGSC 249 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcCccceeeeecCCCCCCcccccCccCccCCceeEEEEeCCCCC
Confidence 99999999999999999999999999999999998776667789999999999999999999999999999999974 8
Q ss_pred CCceEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 274 GGLQIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 274 ~GLQV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
+||||+++|+|++|+|+||+||||+||+||
T Consensus 250 ~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~ 279 (361)
T PLN02758 250 VGLQILKDNTWVPVHPVPNALVINIGDTLE 279 (361)
T ss_pred CCeeeeeCCEEEeCCCCCCeEEEEccchhh
Confidence 999999999999999999999999999997
No 5
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=7.4e-63 Score=462.51 Aligned_cols=255 Identities=29% Similarity=0.558 Sum_probs=214.7
Q ss_pred cchHHHHhcCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCC
Q 039774 44 VGVKGLVDLGVTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIG 123 (303)
Q Consensus 44 ~~v~~l~~~~~~~vP~~f~~p~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~ 123 (303)
--||+|. +++..||++|++|.++++.......+ ..+||+|||+.+.+ .++.+++++|++||++||||||+||||+
T Consensus 6 ~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~iPvIDls~~~~-~~~~~~~~~l~~A~~~~GFf~v~nHGI~ 80 (348)
T PLN02912 6 LLVSDIA-SVVDHVPSNYVRPVSDRPNMSEVETS---GDSIPLIDLRDLHG-PNRADIINQFAHACSSYGFFQIKNHGVP 80 (348)
T ss_pred hHHHHHh-cCCCCCCHHhcCCchhcccccccccc---CCCCCeEECcccCC-cCHHHHHHHHHHHHHHCCEEEEEeCCCC
Confidence 4588886 89999999999999888742111112 35799999998863 3477889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCCCCCccch---hhhhhhHH
Q 039774 124 VEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTEPELEEVP---EICRKEAV 200 (303)
Q Consensus 124 ~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~~~p~~~P---~~fr~~~~ 200 (303)
.++++++++++++||+||.|+|++++........+|...+........+|+|.+.+...|....++.|| +.||++++
T Consensus 81 ~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr~~~~ 160 (348)
T PLN02912 81 EETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFNVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTA 160 (348)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccccccccccccCCchheEEEeecCcccccccCcchhHHHHHHHH
Confidence 999999999999999999999999755544333344333333334567999998775444322345565 68999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCCceEEe
Q 039774 201 EWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKH 280 (303)
Q Consensus 201 ~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLQV~~ 280 (303)
+|+++|.+|+.+|+++||++|||++++|.+.+....+.||+||||||+.++..+|+++|||+|+||||+||+++||||++
T Consensus 161 ~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Qd~v~GLQV~~ 240 (348)
T PLN02912 161 EYATSVRALVLTLLEAISESLGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDEVSGLQVFK 240 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEECCCCceEEEE
Confidence 99999999999999999999999999999877666678999999999998889999999999999999999999999998
Q ss_pred CCeEEEeccCCCcEEEeeCccCC
Q 039774 281 GEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 281 ~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
+|+|++|+|+||++||||||+||
T Consensus 241 ~g~Wi~V~p~pgalvVNiGD~L~ 263 (348)
T PLN02912 241 DGKWIAVNPIPNTFIVNLGDQMQ 263 (348)
T ss_pred CCcEEECCCcCCeEEEEcCHHHH
Confidence 99999999999999999999986
No 6
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=2e-62 Score=460.60 Aligned_cols=243 Identities=28% Similarity=0.430 Sum_probs=202.5
Q ss_pred HhcCCCCCCccccCCCCCCC--CCCCC-CCCCCCCCCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHH
Q 039774 50 VDLGVTAIPRFFIHPPATLA--DLRPK-SKTRPVSDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEV 126 (303)
Q Consensus 50 ~~~~~~~vP~~f~~p~~~~~--~~~~~-~~~~~~~~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l 126 (303)
+.+++.+||++|++|+++++ ..... ... ..+||||||+.. .++++|++||++||||||+||||+.++
T Consensus 23 ~~~~~~~vp~~~v~p~~~~~~~~~~~~~~~~---~~~iPvIDl~~~-------~~~~~l~~Ac~~~GFF~vvnHGI~~~l 92 (358)
T PLN02254 23 DFTSLQTLPDSHVWTPKDDLLFSSAPSPSTT---DESIPVIDLSDP-------NALTLIGHACETWGVFQVTNHGIPLSL 92 (358)
T ss_pred chhhhccCChhhcCChhhccCccccccccCc---CCCCCeEeCCCH-------HHHHHHHHHHHHCCEEEEEcCCCCHHH
Confidence 33445689999999999883 21100 112 357999999742 478999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCCCCCccch---hhhhhhHHHHH
Q 039774 127 LERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTEPELEEVP---EICRKEAVEWN 203 (303)
Q Consensus 127 ~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~~~p~~~P---~~fr~~~~~y~ 203 (303)
++++++.+++||+||.|+|+++.. ......||+...........+|+|.|.+...|....++.|| +.||+++++|+
T Consensus 93 ~~~~~~~~~~FF~LP~EeK~k~~~-~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~fr~~~~~Y~ 171 (358)
T PLN02254 93 LDDIESQTRRLFSLPAQRKLKAAR-SPDGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQ 171 (358)
T ss_pred HHHHHHHHHHHHcCCHHHHHhhcc-CCCCcccccccccccccCCCCceeeEEeecCccccchhhCCCCchHHHHHHHHHH
Confidence 999999999999999999999854 34456789764433334567999999886555322344555 57999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhhhhcc-----cCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCCceE
Q 039774 204 HHVKQLGELLFGLLCEGLGLKTDKLKENT-----FLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQI 278 (303)
Q Consensus 204 ~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~-----~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLQV 278 (303)
++|.+|+.+||++|+++|||++++|.+.+ ....+.||+||||||++++.++|+++|||+|+||||+||+++||||
T Consensus 172 ~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd~v~GLQV 251 (358)
T PLN02254 172 KEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQSNTSGLQV 251 (358)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEEEecCCCCCceE
Confidence 99999999999999999999999987654 2344689999999999999999999999999999999999999999
Q ss_pred EeCC-eEEEeccCCCcEEEeeCccCC
Q 039774 279 KHGE-EWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 279 ~~~g-~Wv~V~p~pgalvVNvGD~Lq 303 (303)
+++| +|++|+|+||+|||||||+||
T Consensus 252 ~~~~~~Wi~V~p~pgalVVNiGD~lq 277 (358)
T PLN02254 252 FREGVGWVTVPPVPGSLVVNVGDLLH 277 (358)
T ss_pred ECCCCEEEEcccCCCCEEEEhHHHHH
Confidence 9886 899999999999999999986
No 7
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=9.2e-62 Score=457.60 Aligned_cols=259 Identities=35% Similarity=0.603 Sum_probs=218.7
Q ss_pred ccccchHHHHhcCCCCCCccccCCCCCCCCCC-CC-CCCCCCCCCcceeeCCCCC--CCCChHHHHHHHHHHHhhcCeEE
Q 039774 41 ESKVGVKGLVDLGVTAIPRFFIHPPATLADLR-PK-SKTRPVSDVVPTIDLSGVD--SDDLRPTIVEKIACASRELGFFQ 116 (303)
Q Consensus 41 ~~~~~v~~l~~~~~~~vP~~f~~p~~~~~~~~-~~-~~~~~~~~~iPvIDls~l~--~~~~r~~~~~~l~~A~~~~GFF~ 116 (303)
.+.+.||.|++++.++||+.|++|+++++... .. ..+ ..+||||||+.+. ++..|.+++++|++||++|||||
T Consensus 10 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~ 86 (362)
T PLN02393 10 EPIVRVQSLSESGLPTIPDRYVKPPSQRPNSSNTTSAPA---EINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQ 86 (362)
T ss_pred CccchHHHHHhcCCCcCCHHHcCCchhccccccccccCc---CCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEE
Confidence 34568999999999999999999999987421 01 112 4689999999986 23457889999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCC-CCCccch---
Q 039774 117 VVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTE-PELEEVP--- 192 (303)
Q Consensus 117 v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~-~~p~~~P--- 192 (303)
|+||||+.++++++++.+++||+||.|+|+++.. ......||+...........+|+|.|.+...|.. ..++.||
T Consensus 87 l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~-~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~ 165 (362)
T PLN02393 87 VVNHGVRPELMDRAREAWREFFHLPLEVKQRYAN-SPATYEGYGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLP 165 (362)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhc-ccCcccccccccccccccccCchhheeeeecCccccchhhCcccc
Confidence 9999999999999999999999999999999853 3345678864433333456899999877654432 2345565
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCC---CceeeeecCCCCCCCCCcccccccccCCceEEEe
Q 039774 193 EICRKEAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLE---GRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILL 269 (303)
Q Consensus 193 ~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~---~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~ 269 (303)
+.||+++++|+++|.+|+.+|+++||++|||++++|.+.+... ...+|+||||+|++++.++|+++|||+|+||||+
T Consensus 166 ~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~ 245 (362)
T PLN02393 166 PSCRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGEDGVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILL 245 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccccceeeeeecCCCCCcccccccccccCCceEEEEe
Confidence 6899999999999999999999999999999999999876432 3689999999999998899999999999999999
Q ss_pred c-CCCCCceEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 270 Q-DDKGGLQIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 270 q-d~~~GLQV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
| ++++||||+++|+|++|+|.||++|||+||+||
T Consensus 246 q~~~v~GLQV~~~g~W~~V~p~pgalVVNiGD~l~ 280 (362)
T PLN02393 246 PDDNVAGLQVRRDDAWITVKPVPDAFIVNIGDQIQ 280 (362)
T ss_pred eCCCCCcceeeECCEEEECCCCCCeEEEEcchhhH
Confidence 8 469999999889999999999999999999996
No 8
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=5.5e-62 Score=459.04 Aligned_cols=256 Identities=30% Similarity=0.487 Sum_probs=216.0
Q ss_pred chHHHHhcCCCCCCccccCCCCCCCCCCCCC-----CCCCCCCCcceeeCCCCC--CCCChHHHHHHHHHHHhhcCeEEE
Q 039774 45 GVKGLVDLGVTAIPRFFIHPPATLADLRPKS-----KTRPVSDVVPTIDLSGVD--SDDLRPTIVEKIACASRELGFFQV 117 (303)
Q Consensus 45 ~v~~l~~~~~~~vP~~f~~p~~~~~~~~~~~-----~~~~~~~~iPvIDls~l~--~~~~r~~~~~~l~~A~~~~GFF~v 117 (303)
.||.|+++++.+||+.|++|+++++...... .. ...||||||+.+. ++..|.+++++|++||++||||||
T Consensus 7 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l 83 (360)
T PLN03178 7 RVEALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAA---GPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHL 83 (360)
T ss_pred hHHHHHhcCCCCCCHHHcCCchhccccccccccccccc---CCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEE
Confidence 4899999999999999999999887431111 12 3579999999886 333578899999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHHHHhCCCccccccccccCC-CCceeeccccccccccCCCcccceeeeccCCC-CCCccch---
Q 039774 118 VNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRREN-TKGVSYISNIDLFHSKAASWRDTLQIRLGLTE-PELEEVP--- 192 (303)
Q Consensus 118 ~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~-~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~-~~p~~~P--- 192 (303)
+||||+.++++++++.+++||+||.|+|+++..... ....||+........+..+|+|.+.....|.. ..++.||
T Consensus 84 ~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~ 163 (360)
T PLN03178 84 VGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTP 163 (360)
T ss_pred EcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccccCCccccccccCCCCc
Confidence 999999999999999999999999999999854332 34578865433223455789998765434432 3355666
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccC---CCceeeeecCCCCCCCCCcccccccccCCceEEEe
Q 039774 193 EICRKEAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFL---EGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILL 269 (303)
Q Consensus 193 ~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~---~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~ 269 (303)
+.||+++++|+++|.+|+.+|+++||++|||++++|.+.+.. ..+.+|++|||+|+.++..+|+++|||+|+||||+
T Consensus 164 p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~ 243 (360)
T PLN03178 164 PDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEVGGLEELLLQMKINYYPRCPQPDLALGVEAHTDVSALTFIL 243 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccchhhhheeccCCCCCCccccCcCCccCCCceEEEe
Confidence 579999999999999999999999999999999999987652 23579999999999999999999999999999999
Q ss_pred cCCCCCceEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 270 QDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 270 qd~~~GLQV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
||+++||||+++|+|++|+|+||++||||||+||
T Consensus 244 qd~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~L~ 277 (360)
T PLN03178 244 HNMVPGLQVLYEGKWVTAKCVPDSIVVHIGDTLE 277 (360)
T ss_pred eCCCCceeEeECCEEEEcCCCCCeEEEEccHHHH
Confidence 9999999999999999999999999999999986
No 9
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.4e-61 Score=451.15 Aligned_cols=249 Identities=37% Similarity=0.635 Sum_probs=210.6
Q ss_pred HHHHhcCC--CCCCccccCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCH
Q 039774 47 KGLVDLGV--TAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGV 124 (303)
Q Consensus 47 ~~l~~~~~--~~vP~~f~~p~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~ 124 (303)
+.|+++|+ .+||+.|++|++++|.... ... ..+||||||+.. ++++++++|++||++||||||+||||+.
T Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~~~p~~~~-~~~---~~~iPvIDls~~----~~~~~~~~l~~Ac~~~GFf~v~nHGI~~ 74 (337)
T PLN02639 3 TKLLSTGIRHTTLPESYVRPESERPRLSE-VST---CENVPVIDLGSP----DRAQVVQQIGDACRRYGFFQVINHGVSA 74 (337)
T ss_pred hhhhhhcCCcCcCCHHhcCCchhcccccc-ccc---CCCCCeEECCCc----cHHHHHHHHHHHHHhCCEEEEEcCCCCH
Confidence 45899987 9999999999988874211 112 457999999863 4778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCCCCCccch---hhhhhhHHH
Q 039774 125 EVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTEPELEEVP---EICRKEAVE 201 (303)
Q Consensus 125 ~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~~~p~~~P---~~fr~~~~~ 201 (303)
++++++++.+++||+||.|+|+++.........+|...+....+...+|+|.+.+...|....++.|| +.||+++++
T Consensus 75 ~l~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~~~~~n~wP~~~~~fr~~~~~ 154 (337)
T PLN02639 75 ELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNVRKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFKEIVST 154 (337)
T ss_pred HHHHHHHHHHHHHhcCCHHHHhhhhccCCCCccccccccccccCcccCchheEEeeecCCcccchhCcccchHHHHHHHH
Confidence 99999999999999999999999865443333344333333334567999999876555432244565 589999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCC-CCCceEEe
Q 039774 202 WNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDD-KGGLQIKH 280 (303)
Q Consensus 202 y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~-~~GLQV~~ 280 (303)
|+++|.+|+.+|+++||++|||++++|.+.+......+|+||||+|++++..+|+++|||+|+||||+||+ ++||||++
T Consensus 155 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~~ 234 (337)
T PLN02639 155 YCREVRELGFRLQEAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVAGLQVLK 234 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccEEEEEcCCCCCCcccccCCCCCcCCCceEEEEecCCcCceEeec
Confidence 99999999999999999999999999998776666789999999999988899999999999999999984 99999998
Q ss_pred CCeEEEeccCCCcEEEeeCccCC
Q 039774 281 GEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 281 ~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
+|+|++|+|+||++|||+||+||
T Consensus 235 ~g~Wi~V~p~pg~lVVNiGD~L~ 257 (337)
T PLN02639 235 DGKWVAVNPHPGAFVINIGDQLQ 257 (337)
T ss_pred CCeEEeccCCCCeEEEechhHHH
Confidence 89999999999999999999986
No 10
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=6.9e-61 Score=450.25 Aligned_cols=247 Identities=32% Similarity=0.544 Sum_probs=207.7
Q ss_pred cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcceeeCCCCC-CCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHH
Q 039774 52 LGVTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVD-SDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERM 130 (303)
Q Consensus 52 ~~~~~vP~~f~~p~~~~~~~~~~~~~~~~~~~iPvIDls~l~-~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~ 130 (303)
+++.+||++|++|++++|.... ... ...||||||+.+. ++..|.+++++|++||++||||||+||||+.++++++
T Consensus 10 ~~~~~~p~~~~~~~~~~~~~~~-~~~---~~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~ 85 (358)
T PLN02515 10 AGESTLQSSFVRDEDERPKVAY-NQF---SDEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADM 85 (358)
T ss_pred cCCCcCCHHhcCCchhccCccc-ccc---CCCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHH
Confidence 4578999999999999874211 112 3479999999886 3445788999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCC-CCCccch---hhhhhhHHHHHHHH
Q 039774 131 VRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTE-PELEEVP---EICRKEAVEWNHHV 206 (303)
Q Consensus 131 ~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~-~~p~~~P---~~fr~~~~~y~~~~ 206 (303)
++.+++||+||.|+|+++..... ...||............||+|.|.+...|.. ..++.|| +.||+++++|+++|
T Consensus 86 ~~~~~~FF~LP~eeK~k~~~~~~-~~~Gy~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~ 164 (358)
T PLN02515 86 TRLARDFFALPAEEKLRFDMSGG-KKGGFIVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKL 164 (358)
T ss_pred HHHHHHHhcCCHHHHhhhCcCCC-CccCcccccccccccccCceeeeccccCcccccccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999854332 3468854332223446899999876434432 3345666 57999999999999
Q ss_pred HHHHHHHHHHHHhhcCCChhhhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCCceEEeCC--eE
Q 039774 207 KQLGELLFGLLCEGLGLKTDKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGE--EW 284 (303)
Q Consensus 207 ~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLQV~~~g--~W 284 (303)
.+|+.+|+++|+++|||++++|.+.+....+.+|+||||+|+.++..+|+++|||+|+||||+||+++||||++++ +|
T Consensus 165 ~~L~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~~~~~~W 244 (358)
T PLN02515 165 MGLACKLLEVLSEAMGLEKEALTKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGKTW 244 (358)
T ss_pred HHHHHHHHHHHHHhcCCChhhHHHhhcCccceEEEeecCCCCChhhccCCCCCCCCCeEEEEecCCCCceEEEECCCCeE
Confidence 9999999999999999999999987765567899999999999999999999999999999999999999998763 79
Q ss_pred EEeccCCCcEEEeeCccCC
Q 039774 285 VDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 285 v~V~p~pgalvVNvGD~Lq 303 (303)
++|+|+||+||||+||+||
T Consensus 245 i~Vpp~pgalVVNiGD~L~ 263 (358)
T PLN02515 245 ITVQPVEGAFVVNLGDHGH 263 (358)
T ss_pred EECCCCCCeEEEEccHHHH
Confidence 9999999999999999986
No 11
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=6.6e-61 Score=451.64 Aligned_cols=242 Identities=31% Similarity=0.455 Sum_probs=208.8
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCcceeeCCCCC--CCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHH
Q 039774 55 TAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVD--SDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVR 132 (303)
Q Consensus 55 ~~vP~~f~~p~~~~~~~~~~~~~~~~~~~iPvIDls~l~--~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~ 132 (303)
.+||+.|++|.+++|.. ... ..+||||||+.+. ++..|.+++++|++||++||||||+|||||.++++++++
T Consensus 18 ~~vp~~~~~~~~~~p~~---~~~---~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~ 91 (361)
T PLN02276 18 SNIPAQFIWPDEEKPSA---AVP---ELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHE 91 (361)
T ss_pred CCCCHHhcCCccccCCC---CCc---CCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHH
Confidence 57999999999988742 112 3579999999886 344577899999999999999999999999999999999
Q ss_pred HHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCC--------CCCccchh---hhhhhHHH
Q 039774 133 AIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTE--------PELEEVPE---ICRKEAVE 201 (303)
Q Consensus 133 ~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~--------~~p~~~P~---~fr~~~~~ 201 (303)
.+++||+||.|+|+++.. .....+||.........+..||+|.|.+...+.. .+++.||+ .||+++++
T Consensus 92 ~~~~FF~LP~eeK~k~~~-~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~ 170 (361)
T PLN02276 92 YMDAFFKLPLSEKQRAQR-KPGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQE 170 (361)
T ss_pred HHHHHHcCCHHHHHhhcc-CCCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHH
Confidence 999999999999999854 3445679976543333456799999988654321 22456763 58899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCCceEEeC
Q 039774 202 WNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHG 281 (303)
Q Consensus 202 y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLQV~~~ 281 (303)
|+++|.+|+.+||++||++|||++++|.+.+......||+||||+|+.++..+|+++|||+|+||||+||+++||||+++
T Consensus 171 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~ 250 (361)
T PLN02276 171 YCEAMKTLSLKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVFVD 250 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEEEC
Confidence 99999999999999999999999999998876666789999999999999999999999999999999999999999999
Q ss_pred CeEEEeccCCCcEEEeeCccCC
Q 039774 282 EEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 282 g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
|+|++|+|+||++||||||+||
T Consensus 251 g~Wi~V~p~pgalVVNiGD~L~ 272 (361)
T PLN02276 251 NKWRSVRPRPGALVVNIGDTFM 272 (361)
T ss_pred CEEEEcCCCCCeEEEEcHHHHH
Confidence 9999999999999999999986
No 12
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.2e-60 Score=444.69 Aligned_cols=254 Identities=27% Similarity=0.401 Sum_probs=210.8
Q ss_pred chHHHHhcCCCCCCccccCCCCCCCCCCC--CCCCCCCCCCcceeeCCCCCC-CCChHHHHHHHHHHHhhcCeEEEEcCC
Q 039774 45 GVKGLVDLGVTAIPRFFIHPPATLADLRP--KSKTRPVSDVVPTIDLSGVDS-DDLRPTIVEKIACASRELGFFQVVNHG 121 (303)
Q Consensus 45 ~v~~l~~~~~~~vP~~f~~p~~~~~~~~~--~~~~~~~~~~iPvIDls~l~~-~~~r~~~~~~l~~A~~~~GFF~v~nHG 121 (303)
-||+|++++ ..||+.|++|++.++.... ...+ ..+||||||+.+.+ +..+.+++++|++||++||||||+|||
T Consensus 8 ~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~---~~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHG 83 (348)
T PLN00417 8 TVQEVVAAG-EGLPERYLHTPTGDGEGQPLNGAVP---EMDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHG 83 (348)
T ss_pred hHHHHHhCC-CCCCccccCCccccccccccccccc---CCCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCC
Confidence 489999887 6999999999988642111 1112 35799999998762 233445679999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeeccCCC-CCCccch---hhhhh
Q 039774 122 IGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTE-PELEEVP---EICRK 197 (303)
Q Consensus 122 i~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~-~~p~~~P---~~fr~ 197 (303)
||.++++++++.+++||+||.|+|+++.... ...+||+...........+|+|.+.+...|.. ..++.|| ++||+
T Consensus 84 I~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~-~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~ 162 (348)
T PLN00417 84 ITEAFLDKIYKLTKQFFALPTEEKQKCAREI-GSIQGYGNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRE 162 (348)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHhhcCC-CCccccccccccccCCCcCccceeecccCCcccccccccccccHHHHH
Confidence 9999999999999999999999999985433 34679975433233456799998866544432 2345565 68999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCC-CceeeeecCCCCCCCCCcccccccccCCceEEEecC-CCCC
Q 039774 198 EAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLE-GRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQD-DKGG 275 (303)
Q Consensus 198 ~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~-~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd-~~~G 275 (303)
++++|+++|.+|+.+|+++||++|||++++|.+.+... ...||+||||||+.++.++|+++|||+|+||||+|| +++|
T Consensus 163 ~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~~v~G 242 (348)
T PLN00417 163 TLHEYTMKQRLVIEKFFKAMARSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEG 242 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCccceeeeeecCCCCCcccccCCcCccCCCceEEEEecCCCCc
Confidence 99999999999999999999999999999998876543 356999999999999889999999999999999997 6999
Q ss_pred ceEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 276 LQIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 276 LQV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
|||+++|+|++|+|+||++||||||+||
T Consensus 243 LQV~~~g~Wi~V~p~pg~lVVNiGD~Le 270 (348)
T PLN00417 243 LQFLKDGKWYKAPIVPDTILINVGDQME 270 (348)
T ss_pred eeEeECCeEEECCCCCCcEEEEcChHHH
Confidence 9999899999999999999999999986
No 13
>PLN02704 flavonol synthase
Probab=100.00 E-value=3.7e-60 Score=442.78 Aligned_cols=252 Identities=33% Similarity=0.502 Sum_probs=211.6
Q ss_pred chHHHHhcC--CCCCCccccCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 45 GVKGLVDLG--VTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 45 ~v~~l~~~~--~~~vP~~f~~p~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
+||.+++++ ..+||++|++|++++|.......+ ..+||||||+.. ++.+++++|++||++||||||+||||
T Consensus 5 ~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~---~~~iPvIDls~~----~~~~~~~~l~~Ac~~~GFf~l~nHGI 77 (335)
T PLN02704 5 RVQAIASSSLLKETIPEEFIRSEKEQPAITTFHGV---DPQVPTIDLSDP----DEEKLTRLIAEASKEWGMFQIVNHGI 77 (335)
T ss_pred hHHHHHhCCCCcCCCCHHHcCCccccccccccccc---CCCCCeEECCCc----cHHHHHHHHHHHHHHcCEEEEEcCCC
Confidence 588998876 899999999999998853211122 457999999864 35678999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCccccccccccC-CCCceeeccccccccccCCCcccceeeeccCCC-CCCccch---hhhhh
Q 039774 123 GVEVLERMVRAIKGFHEQPPEIKAPVYRRE-NTKGVSYISNIDLFHSKAASWRDTLQIRLGLTE-PELEEVP---EICRK 197 (303)
Q Consensus 123 ~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~-~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~p~~-~~p~~~P---~~fr~ 197 (303)
+.++++++++.+++||+||.|+|+++.... .....||............+|+|.+.....|.. ..++.|| +.||+
T Consensus 78 ~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr~ 157 (335)
T PLN02704 78 PSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYRE 157 (335)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeeeEeeecCCcccchhhCccccchhHH
Confidence 999999999999999999999999985432 223578865443333456789998765444432 2334565 57999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCC--CceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCC
Q 039774 198 EAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLE--GRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGG 275 (303)
Q Consensus 198 ~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~--~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~G 275 (303)
++++|+++|.+|+.+|+++|+++|||++++|.+.+... ...+|+||||+|++++..+|+++|||+|+||||+||+++|
T Consensus 158 ~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~G 237 (335)
T PLN02704 158 VNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGEELEYLLKINYYPPCPRPDLALGVVAHTDMSAITILVPNEVQG 237 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCchhhhhhhhcCCCCCCcccccCccCccCCcceEEEecCCCCc
Confidence 99999999999999999999999999999998865432 3579999999999999999999999999999999999999
Q ss_pred ceEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 276 LQIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 276 LQV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
|||+++|+|++|+|+||+|||||||+||
T Consensus 238 LQV~~~g~Wi~V~p~pg~lvVNvGD~L~ 265 (335)
T PLN02704 238 LQVFRDDHWFDVKYIPNALVIHIGDQIE 265 (335)
T ss_pred eeEeECCEEEeCCCCCCeEEEEechHHH
Confidence 9999899999999999999999999986
No 14
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=1.8e-59 Score=434.34 Aligned_cols=222 Identities=43% Similarity=0.650 Sum_probs=195.2
Q ss_pred CCCcceeeCCCCCCCC-ChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceee
Q 039774 81 SDVVPTIDLSGVDSDD-LRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSY 159 (303)
Q Consensus 81 ~~~iPvIDls~l~~~~-~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY 159 (303)
..+||||||+.+.+.. .+..++++|++||++||||||+|||||.++++++++.+++||+||.|+|++++..+. ...||
T Consensus 15 ~~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~-~~~gY 93 (322)
T KOG0143|consen 15 ELDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPG-KYRGY 93 (322)
T ss_pred CCCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCC-Ccccc
Confidence 3679999999876222 588889999999999999999999999999999999999999999999999965443 56899
Q ss_pred ccccccccccCCCcccceeeeccCCC-CCCcc---chhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccC-
Q 039774 160 ISNIDLFHSKAASWRDTLQIRLGLTE-PELEE---VPEICRKEAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFL- 234 (303)
Q Consensus 160 ~~~~~~~~~~~~d~~e~~~~~~~p~~-~~p~~---~P~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~- 234 (303)
++.+........+|+|++.+...|.. ..++. +|+.||+++++|.+++.+|+.+|+++|+++||++.+++.+.+..
T Consensus 94 ~~~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~~~ 173 (322)
T KOG0143|consen 94 GTSFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFGET 173 (322)
T ss_pred cccccccccccccchhheeeeccCccccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCCc
Confidence 88776644578999999998887752 23333 35789999999999999999999999999999987777766554
Q ss_pred CCceeeeecCCCCCCCCCcccccccccCCceEEEecC-CCCCceEE-eCCeEEEeccCCCcEEEeeCccCC
Q 039774 235 EGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQD-DKGGLQIK-HGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 235 ~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd-~~~GLQV~-~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
..+.||+|||||||+|+.++|+++|||.++||||+|| +++||||+ ++|+|++|+|+||+|||||||+||
T Consensus 174 ~~~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~Wi~V~P~p~a~vVNiGD~l~ 244 (322)
T KOG0143|consen 174 GGQVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQDDDVGGLQVFTKDGKWIDVPPIPGAFVVNIGDMLQ 244 (322)
T ss_pred cceEEEEeecCCCcCccccccccCccCcCceEEEEccCCcCceEEEecCCeEEECCCCCCCEEEEcccHHh
Confidence 3568999999999999999999999999999999997 89999999 589999999999999999999997
No 15
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.8e-58 Score=431.73 Aligned_cols=241 Identities=32% Similarity=0.543 Sum_probs=204.0
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHH
Q 039774 55 TAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAI 134 (303)
Q Consensus 55 ~~vP~~f~~p~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~ 134 (303)
.++|..|++|++++|..... .. ..+||||||+.+. +.++.+++++|++||++||||||+||||+.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~---~~~iPvIDls~~~-~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~ 76 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHLT-NS---DEEIPVIDLSVST-SHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVA 76 (345)
T ss_pred CCCCHHHcCCchhccCcccc-cc---CCCCCeEECCCCC-cccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHH
Confidence 57999999999988852111 11 3579999999863 4567889999999999999999999999999999999999
Q ss_pred HHHhCCCccccccccccCCCCceeeccccccccccCCCcccceeeecc-----CCC---------CCCccch---hhhhh
Q 039774 135 KGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLG-----LTE---------PELEEVP---EICRK 197 (303)
Q Consensus 135 ~~FF~lP~eeK~~~~~~~~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~-----p~~---------~~p~~~P---~~fr~ 197 (303)
++||+||.|+|+++.. +.....||.... ......||+|.|.+... |.. ..++.|| +.||+
T Consensus 77 ~~FF~LP~eeK~~~~~-~~~~~~GY~~~~--~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~ 153 (345)
T PLN02750 77 KEFFDQTTEEKRKVKR-DEVNPMGYHDSE--HTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRE 153 (345)
T ss_pred HHHHcCCHHHHHhhcc-CCCCccCcCccc--ccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHH
Confidence 9999999999999854 333456886321 12345699999987532 100 0156777 67999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCCce
Q 039774 198 EAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQ 277 (303)
Q Consensus 198 ~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLQ 277 (303)
++++|+++|.+|+.+|+++||++|||++++|.+.+....+.+|++|||||+.++..+|+++|||+|+||||+||+++|||
T Consensus 154 ~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQ 233 (345)
T PLN02750 154 LCQEYARQVEKLAFKLLELISLSLGLPADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQDDVGGLQ 233 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcceEEEEEecCCCCCcccccCcCCCCCCCeEEEEecCCCCceE
Confidence 99999999999999999999999999999999987766788999999999988889999999999999999999999999
Q ss_pred EEe--CCeEEEeccCCCcEEEeeCccCC
Q 039774 278 IKH--GEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 278 V~~--~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
|+. +|+|++|+|+||+|||||||+||
T Consensus 234 V~~~~~g~Wi~V~p~pg~~vVNiGD~L~ 261 (345)
T PLN02750 234 ISRRSDGEWIPVKPIPDAFIINIGNCMQ 261 (345)
T ss_pred EeecCCCeEEEccCCCCeEEEEhHHHHH
Confidence 975 58999999999999999999986
No 16
>PLN02997 flavonol synthase
Probab=100.00 E-value=1.6e-56 Score=415.84 Aligned_cols=214 Identities=31% Similarity=0.485 Sum_probs=186.0
Q ss_pred CCCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeec
Q 039774 81 SDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYI 160 (303)
Q Consensus 81 ~~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~ 160 (303)
..+||||||+.+ ++++++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ....||.
T Consensus 30 ~~~IPvIDls~~----~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~--~~~~GY~ 103 (325)
T PLN02997 30 AVDVPVVDLSVS----DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKE--EDFEGYK 103 (325)
T ss_pred CCCCCeEECCCC----CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC--CCccccC
Confidence 357999999864 3567899999999999999999999999999999999999999999999998532 3467887
Q ss_pred cccccccccCCCcccceeeeccCCC-CCCccch---hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCC-
Q 039774 161 SNIDLFHSKAASWRDTLQIRLGLTE-PELEEVP---EICRKEAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLE- 235 (303)
Q Consensus 161 ~~~~~~~~~~~d~~e~~~~~~~p~~-~~p~~~P---~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~- 235 (303)
... ..+..+|+|.+.....|.. ..++.|| +.||+++++|+++|.+|+.+|+++|+++|||++++|.+.+...
T Consensus 104 ~~~---~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~~~ 180 (325)
T PLN02997 104 RNY---LGGINNWDEHLFHRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGGET 180 (325)
T ss_pred ccc---ccCCCCccceeEeeecCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCc
Confidence 543 2456789998765444432 2345565 6799999999999999999999999999999999999866432
Q ss_pred -CceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCCceEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 236 -GRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 236 -~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLQV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
...||+||||+|+.++..+|+++|||+|+||||+||+++||||+++|+|++|+|+||+|||||||+||
T Consensus 181 ~~~~lRl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~Le 249 (325)
T PLN02997 181 AEYVLRVNFYPPTQDTELVIGAAAHSDMGAIALLIPNEVPGLQAFKDEQWLDLNYINSAVVVIIGDQLM 249 (325)
T ss_pred ccceeeeecCCCCCCcccccCccCccCCCceEEEecCCCCCEEEeECCcEEECCCCCCeEEEEechHHH
Confidence 34799999999999988999999999999999999999999999999999999999999999999986
No 17
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=3.9e-56 Score=413.78 Aligned_cols=222 Identities=27% Similarity=0.390 Sum_probs=190.6
Q ss_pred CCcceeeCCCCC--CCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceee
Q 039774 82 DVVPTIDLSGVD--SDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSY 159 (303)
Q Consensus 82 ~~iPvIDls~l~--~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY 159 (303)
.+||||||+.+. ++..+.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++........+||
T Consensus 4 ~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~GY 83 (320)
T PTZ00273 4 ASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRGY 83 (320)
T ss_pred CCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCCC
Confidence 579999999886 234567889999999999999999999999999999999999999999999999865544556799
Q ss_pred cccccc--ccccCCCcccceeeecc-CCC----------CCCccch---hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 039774 160 ISNIDL--FHSKAASWRDTLQIRLG-LTE----------PELEEVP---EICRKEAVEWNHHVKQLGELLFGLLCEGLGL 223 (303)
Q Consensus 160 ~~~~~~--~~~~~~d~~e~~~~~~~-p~~----------~~p~~~P---~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl 223 (303)
...... ......||+|.|.+... |.. ..++.|| +.||+++++|+++|.+|+.+|+++||++|||
T Consensus 84 ~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl 163 (320)
T PTZ00273 84 GAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALAIGL 163 (320)
T ss_pred CCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 754321 12345799999987531 210 2367777 5699999999999999999999999999999
Q ss_pred ChhhhhhcccCCCceeeeecCCCCCCC-CCcccccccccCCceEEEecCCCCCceEEe-CCeEEEeccCCCcEEEeeCcc
Q 039774 224 KTDKLKENTFLEGRMMVGHYYPYCPQP-DLTVGITSHTDPGPLTILLQDDKGGLQIKH-GEEWVDVKPVPGALVINIGDI 301 (303)
Q Consensus 224 ~~~~~~~~~~~~~~~lr~~~YP~~~~~-~~~~g~~~HtD~g~lTlL~qd~~~GLQV~~-~g~Wv~V~p~pgalvVNvGD~ 301 (303)
++++|.+.+....+.+|++|||+|+.+ +..+|+++|||+|+||||+||+++||||+. +|+|++|+|+||++|||+||+
T Consensus 164 ~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~GLqV~~~~g~Wi~V~p~pg~lvVNvGD~ 243 (320)
T PTZ00273 164 REDFFDSKFMEPLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQDSVGGLQVRNLSGEWMDVPPLEGSFVVNIGDM 243 (320)
T ss_pred CHHHHHHhhCCCcceeeeeecCCCCCccccCcccccccCCCeEEEEecCCCCceEEECCCCCEEeCCCCCCeEEEEHHHH
Confidence 999999877666678999999999874 578999999999999999999999999986 599999999999999999999
Q ss_pred CC
Q 039774 302 LQ 303 (303)
Q Consensus 302 Lq 303 (303)
||
T Consensus 244 l~ 245 (320)
T PTZ00273 244 ME 245 (320)
T ss_pred HH
Confidence 86
No 18
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=7.2e-56 Score=411.09 Aligned_cols=215 Identities=30% Similarity=0.487 Sum_probs=183.4
Q ss_pred CCCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeec
Q 039774 81 SDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYI 160 (303)
Q Consensus 81 ~~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~ 160 (303)
..+||+|||+.+. +.++.+++++|++||++||||||+|||||.++++++++++++||+||.|+|+++... ..||.
T Consensus 4 ~~~iPvIDls~~~-~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~----~~gy~ 78 (321)
T PLN02299 4 MESFPVIDMEKLN-GEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVA----SKGLE 78 (321)
T ss_pred CCCCCEEECcCCC-cccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccC----CCCcc
Confidence 4679999999885 345777899999999999999999999999999999999999999999999997432 24664
Q ss_pred cccccccccCCCcccceeeeccCCC---CCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcccC---
Q 039774 161 SNIDLFHSKAASWRDTLQIRLGLTE---PELEEVPEICRKEAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTFL--- 234 (303)
Q Consensus 161 ~~~~~~~~~~~d~~e~~~~~~~p~~---~~p~~~P~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~--- 234 (303)
... ......||+|.|.+...|.. .||+ +|+.||+++++|+++|.+|+.+|+++|+++|||++++|.+.+..
T Consensus 79 ~~~--~~~~~~d~ke~~~~~~~~~~~~~~wP~-~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~ 155 (321)
T PLN02299 79 GVQ--TEVEDLDWESTFFLRHLPESNLADIPD-LDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGSKG 155 (321)
T ss_pred ccc--ccCCCcCHHHHcccccCCccccccCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCC
Confidence 321 11245689999987544432 2443 34789999999999999999999999999999999999876532
Q ss_pred CCceeeeecCCCCCCCCCcccccccccCCceEEEecC-CCCCceEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 235 EGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQD-DKGGLQIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 235 ~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd-~~~GLQV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
....+|++|||||+.++..+|+++|||+|+||||+|| +++||||+++|+|++|+|.||++||||||+||
T Consensus 156 ~~~~lRl~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~l~ 225 (321)
T PLN02299 156 PTFGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMRHSIVVNLGDQLE 225 (321)
T ss_pred ccceeeeEecCCCCCcccccCccCccCCCeEEEEEecCCCCCcCcccCCeEEECCCCCCeEEEEeCHHHH
Confidence 3357999999999999889999999999999999997 59999999889999999999999999999986
No 19
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=1.1e-55 Score=394.34 Aligned_cols=222 Identities=28% Similarity=0.477 Sum_probs=201.1
Q ss_pred CCcceeeCCCCC--CCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceee
Q 039774 82 DVVPTIDLSGVD--SDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSY 159 (303)
Q Consensus 82 ~~iPvIDls~l~--~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY 159 (303)
..||+|||+.+. ++.+|..++.+|++||++||||||+||||+..+++++++++|+||+||.|+|.++.+......+||
T Consensus 4 ~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rGY 83 (322)
T COG3491 4 RDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRGY 83 (322)
T ss_pred CcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCcccccc
Confidence 579999999987 455889999999999999999999999999999999999999999999999999976555567899
Q ss_pred ccccccccccCCCcccceeeeccC--------C--C-CCCccch--hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 039774 160 ISNIDLFHSKAASWRDTLQIRLGL--------T--E-PELEEVP--EICRKEAVEWNHHVKQLGELLFGLLCEGLGLKTD 226 (303)
Q Consensus 160 ~~~~~~~~~~~~d~~e~~~~~~~p--------~--~-~~p~~~P--~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~ 226 (303)
.........+..||||.+++...- . . ..||.|| ++||+.+..|+++|.+++.+||++||.+|||+++
T Consensus 84 ~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~LdL~~d 163 (322)
T COG3491 84 TPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWPAIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLPED 163 (322)
T ss_pred ccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 876666667778999999875321 1 1 3588898 7899999999999999999999999999999999
Q ss_pred hhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCCceEEeC-CeEEEeccCCCcEEEeeCccCC
Q 039774 227 KLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHG-EEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 227 ~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLQV~~~-g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
+|.+.+.++.+.||+.+||+.+..+..-|.++|||+|+||||+||+++||||+.+ |+|++|+|+||+||||||||||
T Consensus 164 ~Fd~~~~d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Qd~~~GLqv~~~~g~Wl~v~P~pgtlvVNiGdmLe 241 (322)
T COG3491 164 FFDKRTSDPNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQDDVGGLEVRPPNGGWLDVPPIPGTLVVNIGDMLE 241 (322)
T ss_pred hhhhccCCchheEEEEecCCCcccccccccccccCCCeEEEEEecccCCeEEecCCCCeeECCCCCCeEEEeHHHHHH
Confidence 9999877777899999999999988899999999999999999999999999998 9999999999999999999986
No 20
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=5.3e-55 Score=407.71 Aligned_cols=214 Identities=25% Similarity=0.403 Sum_probs=177.4
Q ss_pred CCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCC--ceee
Q 039774 82 DVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTK--GVSY 159 (303)
Q Consensus 82 ~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~--~~gY 159 (303)
.+||+|||+.+ .+++|++||++||||||+|||||.++++++++.+++||+||.|+|+++....... ..||
T Consensus 37 ~~IPvIDls~~--------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~ 108 (341)
T PLN02984 37 IDIPVIDMECL--------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGT 108 (341)
T ss_pred CCCCeEeCcHH--------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCc
Confidence 46999999864 2589999999999999999999999999999999999999999999985222111 1122
Q ss_pred ccccccc-------cccCCCcccceeeeccCCC---CCCccch--hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCC--h
Q 039774 160 ISNIDLF-------HSKAASWRDTLQIRLGLTE---PELEEVP--EICRKEAVEWNHHVKQLGELLFGLLCEGLGLK--T 225 (303)
Q Consensus 160 ~~~~~~~-------~~~~~d~~e~~~~~~~p~~---~~p~~~P--~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~--~ 225 (303)
....... .....||+|.|.+...+.. .+|..+| +.||+++++|+++|.+|+.+|+++||++|||+ +
T Consensus 109 ~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~~~~ 188 (341)
T PLN02984 109 PALTPSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLELSG 188 (341)
T ss_pred ccccccccccccccccCCCCeeeEEeCcCCchhhhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcch
Confidence 1100000 0124799999987533211 2332232 57999999999999999999999999999999 9
Q ss_pred hhhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCCceEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 226 DKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 226 ~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLQV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
++|.+.+......||++|||||+.++..+|+++|||+|+||||+||+++||||+++|+|++|+|+||+||||+||+||
T Consensus 189 ~~f~~~~~~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd~v~GLQV~~~g~Wv~V~p~pgalVVNiGD~Le 266 (341)
T PLN02984 189 DQKMSYLSESTGVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQDEVGGLEVMKDGEWFNVKPIANTLVVNLGDMMQ 266 (341)
T ss_pred hHHHHHhcCccceEEEEeCCCCCCcccccCccCccCCCceEEEEeCCCCCeeEeeCCceEECCCCCCeEEEECChhhh
Confidence 999887766667899999999998888999999999999999999999999999899999999999999999999997
No 21
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.7e-55 Score=407.81 Aligned_cols=216 Identities=25% Similarity=0.327 Sum_probs=182.0
Q ss_pred CCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeecc
Q 039774 82 DVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYIS 161 (303)
Q Consensus 82 ~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~ 161 (303)
.+||+|||+. ..+..++++|++||++||||||+||||+.++++++++++++||+||.|+|+++.. . ...+||..
T Consensus 13 ~~iP~IDl~~----~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~-~-~~~~GY~~ 86 (332)
T PLN03002 13 SSLNCIDLAN----DDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLR-N-EKHRGYTP 86 (332)
T ss_pred CCCCEEeCCc----hhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcc-C-CCCCCcCc
Confidence 4799999985 2466789999999999999999999999999999999999999999999999843 2 34679975
Q ss_pred cccccc----ccCCCcccceeeecc-CCC--------CCCccch-----hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 039774 162 NIDLFH----SKAASWRDTLQIRLG-LTE--------PELEEVP-----EICRKEAVEWNHHVKQLGELLFGLLCEGLGL 223 (303)
Q Consensus 162 ~~~~~~----~~~~d~~e~~~~~~~-p~~--------~~p~~~P-----~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl 223 (303)
...... ....||+|.|.+... |.. ..++.|| +.||+++++|+++|.+|+.+|+++||++|||
T Consensus 87 ~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl 166 (332)
T PLN03002 87 VLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDL 166 (332)
T ss_pred ccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 322111 123699999987632 211 1256676 4699999999999999999999999999999
Q ss_pred Chhhhhh--cccCCCceeeeecCCCCCCCC-CcccccccccCCceEEEecCCCCCceEEeC-----CeEEEeccCCCcEE
Q 039774 224 KTDKLKE--NTFLEGRMMVGHYYPYCPQPD-LTVGITSHTDPGPLTILLQDDKGGLQIKHG-----EEWVDVKPVPGALV 295 (303)
Q Consensus 224 ~~~~~~~--~~~~~~~~lr~~~YP~~~~~~-~~~g~~~HtD~g~lTlL~qd~~~GLQV~~~-----g~Wv~V~p~pgalv 295 (303)
++++|.+ ......+.||+||||+|+.++ ..+|+++|||+|+||||+||+++||||+++ |+|++|+|+||+||
T Consensus 167 ~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~V 246 (332)
T PLN03002 167 DVGYFDRTEMLGKPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFI 246 (332)
T ss_pred ChHHhccccccCCCchheeeeeCCCCCCcccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEECCCCCCeEE
Confidence 9999986 344445689999999998776 479999999999999999999999999874 58999999999999
Q ss_pred EeeCccCC
Q 039774 296 INIGDILQ 303 (303)
Q Consensus 296 VNvGD~Lq 303 (303)
|||||+||
T Consensus 247 VNiGD~L~ 254 (332)
T PLN03002 247 VNLGDMLE 254 (332)
T ss_pred EEHHHHHH
Confidence 99999986
No 22
>PLN02485 oxidoreductase
Probab=100.00 E-value=5.9e-55 Score=407.22 Aligned_cols=222 Identities=24% Similarity=0.337 Sum_probs=186.0
Q ss_pred CCcceeeCCCCCC---------CCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccC
Q 039774 82 DVVPTIDLSGVDS---------DDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRE 152 (303)
Q Consensus 82 ~~iPvIDls~l~~---------~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~ 152 (303)
..||||||+.+.. +..+.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++....
T Consensus 6 ~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~ 85 (329)
T PLN02485 6 KSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMTP 85 (329)
T ss_pred CCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcccC
Confidence 5799999998741 1245678999999999999999999999999999999999999999999999985444
Q ss_pred CCCceeeccccccccccCCCcccceeeecc--CC--------CCCCccch---hhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 039774 153 NTKGVSYISNIDLFHSKAASWRDTLQIRLG--LT--------EPELEEVP---EICRKEAVEWNHHVKQLGELLFGLLCE 219 (303)
Q Consensus 153 ~~~~~gY~~~~~~~~~~~~d~~e~~~~~~~--p~--------~~~p~~~P---~~fr~~~~~y~~~~~~l~~~Ll~~la~ 219 (303)
....+||...+.....+..||+|.|.+... +. ...++.|| +.||+++++|+++|.+|+.+|+++||+
T Consensus 86 ~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~~a~ 165 (329)
T PLN02485 86 AAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILRGIAL 165 (329)
T ss_pred CCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444579965433333456799998876421 11 02356777 679999999999999999999999999
Q ss_pred hcCCChhhhhhcc-cCCCceeeeecCCCCCC----CCCcccccccccCCceEEEecC-CCCCceEEe-CCeEEEeccCCC
Q 039774 220 GLGLKTDKLKENT-FLEGRMMVGHYYPYCPQ----PDLTVGITSHTDPGPLTILLQD-DKGGLQIKH-GEEWVDVKPVPG 292 (303)
Q Consensus 220 ~Lgl~~~~~~~~~-~~~~~~lr~~~YP~~~~----~~~~~g~~~HtD~g~lTlL~qd-~~~GLQV~~-~g~Wv~V~p~pg 292 (303)
+|||++++|.+.+ ....+.+|++|||+|+. ++..+|+++|||+|+||||+|| +++||||+. +|+|++|+|+||
T Consensus 166 ~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~~~g~Wi~V~p~pg 245 (329)
T PLN02485 166 ALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRNLSGEWIWAIPIPG 245 (329)
T ss_pred HcCCChHHhhhhhccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEcCCCcEEECCCCCC
Confidence 9999999987653 34456899999999986 5678999999999999999997 589999985 599999999999
Q ss_pred cEEEeeCccCC
Q 039774 293 ALVINIGDILQ 303 (303)
Q Consensus 293 alvVNvGD~Lq 303 (303)
++||||||+||
T Consensus 246 ~~vVNiGD~L~ 256 (329)
T PLN02485 246 TFVCNIGDMLK 256 (329)
T ss_pred cEEEEhHHHHH
Confidence 99999999986
No 23
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=3.2e-54 Score=396.71 Aligned_cols=212 Identities=29% Similarity=0.441 Sum_probs=177.6
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeeccc
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISN 162 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~ 162 (303)
+||||||+.+. +..|++++++|++||++||||||+||||+.++++++++.+++||+||.|+|. + ...... ++..
T Consensus 2 ~iPvIDls~~~-~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~-~-~~~~~~--~~~~- 75 (303)
T PLN02403 2 EIPVIDFDQLD-GEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESF-Y-ESEIAK--ALDN- 75 (303)
T ss_pred CCCeEeCccCC-cccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHh-h-cccccC--cccc-
Confidence 59999999875 3467789999999999999999999999999999999999999999999985 2 221111 1211
Q ss_pred cccccccCCCcccceeeeccCCC---CCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhccc---CCC
Q 039774 163 IDLFHSKAASWRDTLQIRLGLTE---PELEEVPEICRKEAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENTF---LEG 236 (303)
Q Consensus 163 ~~~~~~~~~d~~e~~~~~~~p~~---~~p~~~P~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~---~~~ 236 (303)
.......||+|.|.+...|.. .||+. |+.||+++++|+++|.+|+.+|+++|+++|||++++|.+.+. ...
T Consensus 76 --~~~~~~~d~kE~~~~~~~p~~~~~~wP~~-~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~ 152 (303)
T PLN02403 76 --EGKTSDVDWESSFFIWHRPTSNINEIPNL-SEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNKGPS 152 (303)
T ss_pred --cCCCCCccHhhhcccccCCccchhhCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCcc
Confidence 111345699999987654532 34432 468999999999999999999999999999999999988654 223
Q ss_pred ceeeeecCCCCCCCCCcccccccccCCceEEEecC-CCCCceEEeCCeEEEeccCC-CcEEEeeCccCC
Q 039774 237 RMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQD-DKGGLQIKHGEEWVDVKPVP-GALVINIGDILQ 303 (303)
Q Consensus 237 ~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd-~~~GLQV~~~g~Wv~V~p~p-galvVNvGD~Lq 303 (303)
..+|++|||+|++++..+|+++|||+|+||||+|+ +++||||+++|+|++|+|+| |++||||||+||
T Consensus 153 ~~lrl~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~~v~GLqV~~~g~Wi~V~p~p~~~lvVNvGD~L~ 221 (303)
T PLN02403 153 VGTKVAKYPECPRPELVRGLREHTDAGGIILLLQDDQVPGLEFLKDGKWVPIPPSKNNTIFVNTGDQLE 221 (303)
T ss_pred ceeeeEcCCCCCCcccccCccCccCCCeEEEEEecCCCCceEeccCCeEEECCCCCCCEEEEEehHHHH
Confidence 46999999999998888999999999999999997 49999999889999999999 699999999986
No 24
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=6.5e-54 Score=399.45 Aligned_cols=211 Identities=25% Similarity=0.433 Sum_probs=175.9
Q ss_pred CCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeecc
Q 039774 82 DVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYIS 161 (303)
Q Consensus 82 ~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~ 161 (303)
..||||||+.. +..++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... ...||+.
T Consensus 25 ~~iPvIDls~~-------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~---~~~Gy~~ 94 (335)
T PLN02156 25 VLIPVIDLTDS-------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP---DPFGYGT 94 (335)
T ss_pred CCCCcccCCCh-------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC---CCcccCc
Confidence 46999999742 2467999999999999999999999999999999999999999999998432 3458854
Q ss_pred ccccccccCCCcccceeeeccCCC---CCCccch---hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCC-hhhhhhccc-
Q 039774 162 NIDLFHSKAASWRDTLQIRLGLTE---PELEEVP---EICRKEAVEWNHHVKQLGELLFGLLCEGLGLK-TDKLKENTF- 233 (303)
Q Consensus 162 ~~~~~~~~~~d~~e~~~~~~~p~~---~~p~~~P---~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~-~~~~~~~~~- 233 (303)
.. .......+|+|.|.+...+.. ..++.|| +.||+++++|+++|.+|+.+|+++||++||++ +++|.+++.
T Consensus 95 ~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~ 173 (335)
T PLN02156 95 KR-IGPNGDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKV 173 (335)
T ss_pred cc-cCCCCCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcC
Confidence 32 112234689999877654321 1244554 68999999999999999999999999999996 478888653
Q ss_pred -CCCceeeeecCCCCCCC--CCcccccccccCCceEEEecCCCCCceEE-eCCeEEEeccCCCcEEEeeCccCC
Q 039774 234 -LEGRMMVGHYYPYCPQP--DLTVGITSHTDPGPLTILLQDDKGGLQIK-HGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 234 -~~~~~lr~~~YP~~~~~--~~~~g~~~HtD~g~lTlL~qd~~~GLQV~-~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
.....+|+||||+|+.. +..+|+++|||+|+||||+||+++||||+ ++|+|++|+|+||+|||||||+||
T Consensus 174 ~~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~ 247 (335)
T PLN02156 174 KESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQ 247 (335)
T ss_pred CCccceEeEEeCCCCCCCccccccCCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccCCCCcEEEEhHHHHH
Confidence 23468999999999853 35799999999999999999999999998 469999999999999999999986
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=6.2e-53 Score=388.57 Aligned_cols=205 Identities=27% Similarity=0.450 Sum_probs=172.3
Q ss_pred CCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeecc
Q 039774 82 DVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYIS 161 (303)
Q Consensus 82 ~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~ 161 (303)
..||||||+.+. +.+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.. .....||..
T Consensus 4 ~~iPvIDls~~~------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~--~~~~~GY~~ 75 (300)
T PLN02365 4 VNIPTIDLEEFP------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTD--VILGSGYMA 75 (300)
T ss_pred CCCCEEEChhhH------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccC--CCCCCCCCC
Confidence 469999999762 246899999999999999999999999999999999999999999999632 223468864
Q ss_pred ccccccccCCCcccceeeec--cCC--CCCCccc--hhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCC-ChhhhhhcccC
Q 039774 162 NIDLFHSKAASWRDTLQIRL--GLT--EPELEEV--PEICRKEAVEWNHHVKQLGELLFGLLCEGLGL-KTDKLKENTFL 234 (303)
Q Consensus 162 ~~~~~~~~~~d~~e~~~~~~--~p~--~~~p~~~--P~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl-~~~~~~~~~~~ 234 (303)
.. ...+|+|.|.+.. .+. ..+++.| |+.||+++++|+++|.+|+.+|+++||++||| ++++|.+.
T Consensus 76 ~~-----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~--- 147 (300)
T PLN02365 76 PS-----EVNPLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGW--- 147 (300)
T ss_pred cC-----CCCCchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhc---
Confidence 32 2246788776531 111 1233333 36799999999999999999999999999999 88888764
Q ss_pred CCceeeeecCCCCCCCCCcccccccccCCceEEEecCC-CCCceEEeC--CeEEEeccCCCcEEEeeCccCC
Q 039774 235 EGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDD-KGGLQIKHG--EEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 235 ~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~-~~GLQV~~~--g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
...+|++|||+||.++..+|+++|||+|+||||+||+ ++||||+++ |+|++|+|+||++|||+||+||
T Consensus 148 -~~~lr~~~YP~~p~~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p~pga~vVNiGD~l~ 218 (300)
T PLN02365 148 -PSQFRINKYNFTPETVGSSGVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDPLPGTLLVNLGDVAT 218 (300)
T ss_pred -ccceeeeecCCCCCccccccccCccCCCceEEEecCCCcCceEEEECCCCeEEecCCCCCeEEEEhhHHHH
Confidence 3579999999999988899999999999999999984 999999874 8999999999999999999986
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.6e-43 Score=317.15 Aligned_cols=174 Identities=29% Similarity=0.430 Sum_probs=146.7
Q ss_pred HHHHHHHHhC-CCccccccccccCC-CCceeecccccc--ccccCCCcccceeeeccCCC-CCCccch---hhhhhhHHH
Q 039774 130 MVRAIKGFHE-QPPEIKAPVYRREN-TKGVSYISNIDL--FHSKAASWRDTLQIRLGLTE-PELEEVP---EICRKEAVE 201 (303)
Q Consensus 130 ~~~~~~~FF~-lP~eeK~~~~~~~~-~~~~gY~~~~~~--~~~~~~d~~e~~~~~~~p~~-~~p~~~P---~~fr~~~~~ 201 (303)
|.+.+++||+ ||.|+|+++..... ...+||+..... ...+..||+|.|.+...|.. ..++.|| +.||+++++
T Consensus 1 ~~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~ 80 (262)
T PLN03001 1 MRSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGE 80 (262)
T ss_pred ChHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHH
Confidence 3578999997 99999999854332 235689543321 12345799999988655532 3355565 679999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhhhhhcccCCCceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCCceEEeC
Q 039774 202 WNHHVKQLGELLFGLLCEGLGLKTDKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHG 281 (303)
Q Consensus 202 y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLQV~~~ 281 (303)
|+++|.+|+.+|+++|+++||+++++|.+.+......+|++|||+|+.++.++|+++|||+|+||||+||+++||||+++
T Consensus 81 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~ 160 (262)
T PLN03001 81 YGDCMKALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQDDVEGLQLLKD 160 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEeCCCCceEEeeC
Confidence 99999999999999999999999999998776555679999999999999999999999999999999999999999999
Q ss_pred CeEEEeccCCCcEEEeeCccCC
Q 039774 282 EEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 282 g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
|+|++|+|+||++||||||+||
T Consensus 161 g~Wi~V~p~p~a~vVNiGD~l~ 182 (262)
T PLN03001 161 AEWLMVPPISDAILIIIADQTE 182 (262)
T ss_pred CeEEECCCCCCcEEEEccHHHH
Confidence 9999999999999999999986
No 27
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.91 E-value=4.6e-25 Score=175.50 Aligned_cols=106 Identities=27% Similarity=0.407 Sum_probs=85.5
Q ss_pred cceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCceeecccc
Q 039774 84 VPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNI 163 (303)
Q Consensus 84 iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~ 163 (303)
||||||+. +...|.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.. ....+||....
T Consensus 1 iPvIDls~--~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~--~~~~~Gy~~~~ 76 (116)
T PF14226_consen 1 IPVIDLSP--DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYAR--SPSYRGYSPPG 76 (116)
T ss_dssp --EEEHGG--CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBC--CTTCSEEEESE
T ss_pred CCeEECCC--CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcC--CCCCcccccCC
Confidence 79999997 346789999999999999999999999999999999999999999999999999933 34778998754
Q ss_pred ccccc-cCCCcccceeeecc-CCC-------CCCccchh
Q 039774 164 DLFHS-KAASWRDTLQIRLG-LTE-------PELEEVPE 193 (303)
Q Consensus 164 ~~~~~-~~~d~~e~~~~~~~-p~~-------~~p~~~P~ 193 (303)
..... ...||+|+|.+... |.. ..++.||+
T Consensus 77 ~~~~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~n~WP~ 115 (116)
T PF14226_consen 77 SESTDGGKPDWKESFNIGPDLPEDDPAYPPLYGPNIWPD 115 (116)
T ss_dssp EECCTTCCCCSEEEEEEECC-STTCHHTGCTS-GGGS-T
T ss_pred ccccCCCCCCceEEeEEECCCCccccccccccCCCCCCC
Confidence 44334 38999999998765 321 46788885
No 28
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.90 E-value=8.6e-24 Score=169.05 Aligned_cols=111 Identities=25% Similarity=0.434 Sum_probs=88.9
Q ss_pred hHHHHhcCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCC-CCChHHHHHHHHHHHhhcCeEEEEcCCCCH
Q 039774 46 VKGLVDLGVTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDS-DDLRPTIVEKIACASRELGFFQVVNHGIGV 124 (303)
Q Consensus 46 v~~l~~~~~~~vP~~f~~p~~~~~~~~~~~~~~~~~~~iPvIDls~l~~-~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~ 124 (303)
|+.|... ..+|..|+++.+++|.... ... ..+||||||+.+.+ +..+.+++++|++||++||||||+||||+.
T Consensus 6 ~~~l~~~--~~~p~~~~~~~~~~p~~~~-~~~---~~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~ 79 (120)
T PLN03176 6 LTALAEE--KTLQASFVRDEDERPKVAY-NQF---SNEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDA 79 (120)
T ss_pred HHHHhcc--CCCCHhhcCChhhCcCccc-ccc---CCCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCH
Confidence 4455443 7899999999999874211 111 34799999998862 334677899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccccccccccCCCCceeecccc
Q 039774 125 EVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNI 163 (303)
Q Consensus 125 ~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~gY~~~~ 163 (303)
++++++++.+++||+||.|+|+++.. ..+...||+..+
T Consensus 80 elid~~~~~~~~FF~LP~e~K~k~~~-~~~~~~gy~~~~ 117 (120)
T PLN03176 80 KLVSEMTTLAKEFFALPPEEKLRFDM-SGGKKGGFIVSS 117 (120)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHhccc-CCCccCCcchhc
Confidence 99999999999999999999999854 344567886543
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.55 E-value=3.3e-15 Score=115.11 Aligned_cols=64 Identities=50% Similarity=0.895 Sum_probs=53.3
Q ss_pred ceeeeecCCCCCCCCCcccccccccC--CceEEEecCCCCCceEEeCCeEEEeccCCCcEEEeeCccCC
Q 039774 237 RMMVGHYYPYCPQPDLTVGITSHTDP--GPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQ 303 (303)
Q Consensus 237 ~~lr~~~YP~~~~~~~~~g~~~HtD~--g~lTlL~qd~~~GLQV~~~g~Wv~V~p~pgalvVNvGD~Lq 303 (303)
..+|+++||+ ++...|+++|+|. +++|||+|++++||||..+++|+.|++.++.++||+||+||
T Consensus 2 ~~~~~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~~~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~ 67 (98)
T PF03171_consen 2 SQLRLNRYPP---PENGVGIGPHTDDEDGLLTILFQDEVGGLQVRDDGEWVDVPPPPGGFIVNFGDALE 67 (98)
T ss_dssp -EEEEEEE-S---CCGCEEEEEEEES--SSEEEEEETSTS-EEEEETTEEEE----TTCEEEEEBHHHH
T ss_pred CEEEEEECCC---cccCCceeCCCcCCCCeEEEEecccchheeccccccccCccCccceeeeeceeeee
Confidence 3689999998 6778899999999 99999999999999999999999999999999999999764
No 30
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=87.29 E-value=0.39 Score=36.26 Aligned_cols=55 Identities=35% Similarity=0.392 Sum_probs=35.6
Q ss_pred eeeecCCCCCCCCCcccccccccC-----CceEEEec--CC-----CCCceEEe----CCeEEEec-----cCCCcEEEe
Q 039774 239 MVGHYYPYCPQPDLTVGITSHTDP-----GPLTILLQ--DD-----KGGLQIKH----GEEWVDVK-----PVPGALVIN 297 (303)
Q Consensus 239 lr~~~YP~~~~~~~~~g~~~HtD~-----g~lTlL~q--d~-----~~GLQV~~----~g~Wv~V~-----p~pgalvVN 297 (303)
|++++|++. -.+.+|+|. ..+|+|+. +. .|.|++.. ++....++ |.+|.+|+.
T Consensus 1 ~~~~~y~~G------~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F 74 (100)
T PF13640_consen 1 MQLNRYPPG------GFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIF 74 (100)
T ss_dssp -EEEEEETT------EEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEE
T ss_pred CEEEEECcC------CEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEE
Confidence 467777652 346799998 58898853 22 36688874 34556666 999999998
Q ss_pred eC
Q 039774 298 IG 299 (303)
Q Consensus 298 vG 299 (303)
-+
T Consensus 75 ~~ 76 (100)
T PF13640_consen 75 PS 76 (100)
T ss_dssp ES
T ss_pred eC
Confidence 77
No 31
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=83.72 E-value=5.3 Score=33.51 Aligned_cols=79 Identities=25% Similarity=0.120 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcCCChhhhhhcccCCCceeeeecCCCCCCCCCcccccccccCC--------ceEEEec--C--CCCCc
Q 039774 209 LGELLFGLLCEGLGLKTDKLKENTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPG--------PLTILLQ--D--DKGGL 276 (303)
Q Consensus 209 l~~~Ll~~la~~Lgl~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g--------~lTlL~q--d--~~~GL 276 (303)
+...|.+.++..++++.. .......+.+..|.+. -...+|.|.. .+|+++. + ..|.|
T Consensus 60 ~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~~Y~~g------~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~ 128 (178)
T smart00702 60 VIERIRQRLADFLGLLRG-----LPLSAEDAQVARYGPG------GHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGEL 128 (178)
T ss_pred HHHHHHHHHHHHHCCCch-----hhccCcceEEEEECCC------CcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceE
Confidence 344455566666665421 1112234677888762 2356799966 6888875 3 23447
Q ss_pred eEEeCCe--EEEeccCCCcEEEee
Q 039774 277 QIKHGEE--WVDVKPVPGALVINI 298 (303)
Q Consensus 277 QV~~~g~--Wv~V~p~pgalvVNv 298 (303)
.+...+. ...|.|..|.+|+.-
T Consensus 129 ~f~~~~~~~~~~v~P~~G~~v~f~ 152 (178)
T smart00702 129 VFPGLGLMVCATVKPKKGDLLFFP 152 (178)
T ss_pred EecCCCCccceEEeCCCCcEEEEe
Confidence 6665543 678999999988864
No 32
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=67.41 E-value=33 Score=30.43 Aligned_cols=29 Identities=28% Similarity=0.180 Sum_probs=20.2
Q ss_pred CCCceEEeCCeEEEeccCCCcEEEeeCcc
Q 039774 273 KGGLQIKHGEEWVDVKPVPGALVINIGDI 301 (303)
Q Consensus 273 ~~GLQV~~~g~Wv~V~p~pgalvVNvGD~ 301 (303)
.|.|.+.....=..|+|..|.+||.-...
T Consensus 129 GGEl~~~~~~g~~~Vkp~aG~~vlfps~~ 157 (226)
T PRK05467 129 GGELVIEDTYGEHRVKLPAGDLVLYPSTS 157 (226)
T ss_pred CCceEEecCCCcEEEecCCCeEEEECCCC
Confidence 45688875522368899999999875543
No 33
>PRK08130 putative aldolase; Validated
Probab=63.54 E-value=10 Score=33.13 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=29.7
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
.||++++.. ....++++.+.+++++...+.+.|||+
T Consensus 127 ~i~v~~y~~----~g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 127 HVPLIPYYR----PGDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred ccceECCCC----CChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 589988764 235578899999999999999999995
No 34
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=61.98 E-value=11 Score=32.12 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.5
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
.||++++.. ...++.++++.+++++...+.+.|||+
T Consensus 120 ~v~v~~~~~----~g~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 120 KIPILPFRP----AGSVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CEeeecCCC----CCcHHHHHHHHHHhccCCEEEEcCCCC
Confidence 589988764 234678889999999988999999996
No 35
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=53.58 E-value=31 Score=30.13 Aligned_cols=61 Identities=26% Similarity=0.383 Sum_probs=41.9
Q ss_pred CCceeeeecCCCCCCCCCcccccccccCCceEEEecCCCCCceEEeC--CeEEEeccCCCcEEEeeCc
Q 039774 235 EGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHG--EEWVDVKPVPGALVINIGD 300 (303)
Q Consensus 235 ~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLQV~~~--g~Wv~V~p~pgalvVNvGD 300 (303)
.+.+..+|+-|+.+++|....+.-+ =..++|+..|-..+..- |.=+.|||-=|+.++|+||
T Consensus 89 ~G~~~~~H~Hp~ade~E~y~vi~G~-----g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd 151 (209)
T COG2140 89 PGAMRELHYHPNADEPEIYYVLKGE-----GRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGD 151 (209)
T ss_pred CCcccccccCCCCCcccEEEEEecc-----EEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCC
Confidence 3443445666777777766665544 33455766555666543 8899999999999999998
No 36
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=51.62 E-value=12 Score=36.23 Aligned_cols=56 Identities=16% Similarity=0.324 Sum_probs=38.7
Q ss_pred CCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCc
Q 039774 82 DVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPP 142 (303)
Q Consensus 82 ~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~ 142 (303)
.-||.||++.+.+. ...++..+..++.|++.|.| -||.+...+..+..++|.+.-.
T Consensus 48 ~~IP~i~f~di~~~----~~~~~~~~~ir~rG~~VIR~-Vvp~~ea~~w~~e~~~Y~~~n~ 103 (416)
T PF07350_consen 48 SIIPEIDFADIENG----GVSEEFLAEIRRRGCVVIRG-VVPREEALAWKQELKEYLKANP 103 (416)
T ss_dssp -SS-EEEHHHHHCT-------HHHHHHHHHHSEEEECT-SS-HHHHHHHHHHHHHHHHHT-
T ss_pred CCCceeeHHHHhCC----CCCHHHHHHHHhcCEEEEeC-CCCHHHHHHHHHHHHHHHHhCc
Confidence 46999999987522 24567788889999998876 4898888888888888865443
No 37
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=51.47 E-value=19 Score=31.64 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=29.6
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIG 123 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~ 123 (303)
.||++++.. ....++++.+.+++++...+.|.|||+=
T Consensus 127 ~v~~~~y~~----~gs~ela~~v~~~l~~~~~vlL~nHGv~ 163 (217)
T PRK05874 127 DVRCTEYAA----SGTPEVGRNAVRALEGRAAALIANHGLV 163 (217)
T ss_pred ceeeecCCC----CCcHHHHHHHHHHhCcCCEEEEcCCCCe
Confidence 477777753 2346889999999999999999999963
No 38
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=42.37 E-value=94 Score=26.18 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=35.3
Q ss_pred eeeeecCCCCCCCCCcccccccccCCceE---EEe--cCCCCC-ceEE---eCCeEEEeccCCCcEEEeeCcc
Q 039774 238 MMVGHYYPYCPQPDLTVGITSHTDPGPLT---ILL--QDDKGG-LQIK---HGEEWVDVKPVPGALVINIGDI 301 (303)
Q Consensus 238 ~lr~~~YP~~~~~~~~~g~~~HtD~g~lT---lL~--qd~~~G-LQV~---~~g~Wv~V~p~pgalvVNvGD~ 301 (303)
...+|||++. -+++.|.|-.-+. .+. .=+... +.+. +++..+.+.-.+|.++|.-|+.
T Consensus 96 ~~LvN~Y~~G------d~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~s 162 (169)
T TIGR00568 96 ACLVNRYAPG------ATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGES 162 (169)
T ss_pred EEEEEeecCC------CccccccccccccCCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCch
Confidence 3558999864 2689999953221 111 111111 2222 1256889999999999999874
No 39
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=42.37 E-value=35 Score=28.79 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=27.6
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
.||++ ... ....+.++.+.+++.+.-.+.|.|||+
T Consensus 115 ~ipv~-~~~----~~~~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGD----IGSGELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCC----CCCHHHHHHHHHHHhhCCEEEEcCCCc
Confidence 58888 332 234578889999999999999999995
No 40
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=42.13 E-value=32 Score=29.98 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=27.5
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
.||++++.. ..-.++++.+.+++++...+.+.|||+
T Consensus 124 ~i~~~~y~~----~gs~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 124 NVRCAEYAT----FGTKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred CeeeccCCC----CChHHHHHHHHHHhCcCCEEEECCCCC
Confidence 467766542 345567888899999999999999996
No 41
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=40.99 E-value=94 Score=26.02 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=32.5
Q ss_pred eeeeecCCCCCCCCCcccccccccCCce---EEEec--CC-CCCceEEeC---CeEEEeccCCCcEEEeeCcc
Q 039774 238 MMVGHYYPYCPQPDLTVGITSHTDPGPL---TILLQ--DD-KGGLQIKHG---EEWVDVKPVPGALVINIGDI 301 (303)
Q Consensus 238 ~lr~~~YP~~~~~~~~~g~~~HtD~g~l---TlL~q--d~-~~GLQV~~~---g~Wv~V~p~pgalvVNvGD~ 301 (303)
...+|+|++ .. ++++|.|.-.+ ..+.- =+ ..-+.+... +.++.|.-.+|+++|.-|++
T Consensus 98 ~~liN~Y~~-----g~-~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~ 164 (194)
T PF13532_consen 98 QCLINYYRD-----GS-GIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEA 164 (194)
T ss_dssp EEEEEEESS-----TT--EEEE---TTC-CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE-TTEEEEEETTH
T ss_pred EEEEEecCC-----CC-CcCCCCCcccccCCCcEEEEEEccCceEEEeeccCCCccEEEEcCCCCEEEeChHH
Confidence 456899987 24 89999997633 11111 01 112344443 68999999999999998874
No 42
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=40.98 E-value=18 Score=30.53 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=28.6
Q ss_pred CCcceeeCCCCCCCCChHHHHHHHHHHHh-hcCeEEEEcCCC
Q 039774 82 DVVPTIDLSGVDSDDLRPTIVEKIACASR-ELGFFQVVNHGI 122 (303)
Q Consensus 82 ~~iPvIDls~l~~~~~r~~~~~~l~~A~~-~~GFF~v~nHGi 122 (303)
..||+|+.... .-.+.++.|.++++ +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~----~~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPP----GSEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THST----TCHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeeccccc----cchhhhhhhhhhhcCCceEEeecCCce
Confidence 46999998652 33456788999999 889999999995
No 43
>PRK06755 hypothetical protein; Validated
Probab=40.34 E-value=29 Score=30.32 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=27.6
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
.||+|+... ...++.++.+.++.++...+.|.|||+
T Consensus 136 ~IPiv~~~~----~~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEK----KFADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCC----chhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 599998754 223566777777888888899999996
No 44
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=39.53 E-value=41 Score=22.25 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCCCcc
Q 039774 100 TIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPE 143 (303)
Q Consensus 100 ~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e 143 (303)
+.+..|...+...||......|+-.+.+.+++..-+.++.|+..
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~~t 46 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLPVT 46 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-SS
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcCCC
Confidence 45788999999999995555677777777888888888888854
No 45
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=38.62 E-value=1e+02 Score=25.02 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhhcCeEEEEcC-CCCHHHHHHHHHHHHH
Q 039774 98 RPTIVEKIACASRELGFFQVVNH-GIGVEVLERMVRAIKG 136 (303)
Q Consensus 98 r~~~~~~l~~A~~~~GFF~v~nH-Gi~~~l~~~~~~~~~~ 136 (303)
....++++.+.++++.+++++++ |++.+.+.++....+.
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 45688999999999998888874 8998888877776654
No 46
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=38.43 E-value=37 Score=30.93 Aligned_cols=37 Identities=14% Similarity=-0.032 Sum_probs=28.5
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIG 123 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~ 123 (303)
.||++.+.. ..-.++++.+.+++++...+.+.|||+=
T Consensus 179 ~i~vvpy~~----pgs~eLa~~v~~~l~~~~avLL~nHGvv 215 (274)
T PRK03634 179 GVGIVPWMV----PGTDEIGQATAEKMQKHDLVLWPKHGVF 215 (274)
T ss_pred ceeEecCCC----CCCHHHHHHHHHHhccCCEEEEcCCCCe
Confidence 477777653 2345788889999998899999999963
No 47
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=38.26 E-value=42 Score=29.29 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=27.6
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
.||++.+... +-.++++.+.+++.+...+.+.|||+
T Consensus 122 ~v~~~~y~~~----gs~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 122 SIPCAPYATF----GTRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CceeecCCCC----CCHHHHHHHHHHhCcCCEEEecCCCC
Confidence 4788876543 33567888888888888999999996
No 48
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=36.77 E-value=38 Score=30.82 Aligned_cols=36 Identities=25% Similarity=0.074 Sum_probs=29.0
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
.||++.+.. ..-.++++.+.+++++..-+.+.|||+
T Consensus 177 ~i~vvp~~~----pGs~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 177 GVGIIPWMV----PGTNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred ccccccCcC----CCCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 478877754 344578899999999999999999996
No 49
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=36.57 E-value=21 Score=24.49 Aligned_cols=36 Identities=36% Similarity=0.423 Sum_probs=23.1
Q ss_pred ccccccccC---CceEEEe-------cCCCCCceEEeC-CeEEEecc
Q 039774 254 VGITSHTDP---GPLTILL-------QDDKGGLQIKHG-EEWVDVKP 289 (303)
Q Consensus 254 ~g~~~HtD~---g~lTlL~-------qd~~~GLQV~~~-g~Wv~V~p 289 (303)
-|+-|-+|- +-||+|- |--+.-|||+.. |.|-+|+-
T Consensus 16 nG~~P~tdg~liT~ltfL~pkd~~~vq~~f~~LQv~fgDGpWqdikg 62 (64)
T PF06820_consen 16 NGWFPETDGRLITGLTFLDPKDATRVQGVFRHLQVRFGDGPWQDIKG 62 (64)
T ss_pred CccccCCCcceEeeeEEecccCchhheeeeeeeEEEeccCChhhccC
Confidence 456667774 3456662 212467999875 99998863
No 50
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=35.53 E-value=51 Score=31.24 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=38.6
Q ss_pred CCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHHHhCC
Q 039774 82 DVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQ 140 (303)
Q Consensus 82 ~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~l 140 (303)
..+|.||++.+. ...+.+.++.+|+.++|+..+.|-.++.+ .+.+.++.|-.+
T Consensus 108 ~~~~~~d~~~~~---~~~~~~~~~~~~l~~~G~v~~rg~~~~~~---~~~~~~~~~G~~ 160 (366)
T TIGR02409 108 LSLPKFDHEAVM---KDDSVLLDWLSAVRDVGIAVLKGAPTKPG---AVEKLGKRIGFI 160 (366)
T ss_pred ccCCceeHHHHh---CCHHHHHHHHHHHHhccEEEEeCCCCCHH---HHHHHHHHhccc
Confidence 568999997654 23456788999999999999998777664 445556666443
No 51
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=33.86 E-value=1.1e+02 Score=27.64 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=35.8
Q ss_pred eeeCCCCCCCCChHHHHHHHHHHHhhcCe--EEEEc-CCCCHHHHHHHHHHHHHHhC
Q 039774 86 TIDLSGVDSDDLRPTIVEKIACASRELGF--FQVVN-HGIGVEVLERMVRAIKGFHE 139 (303)
Q Consensus 86 vIDls~l~~~~~r~~~~~~l~~A~~~~GF--F~v~n-HGi~~~l~~~~~~~~~~FF~ 139 (303)
+|.++. +.-......+.+.+..+|| |+++| ||=....+..+.+..+..|.
T Consensus 80 Titl~~----~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 80 TITLSP----ETLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred eEEccH----HHHHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 555543 3445677889999999999 77776 88777777777776666554
No 52
>PRK06357 hypothetical protein; Provisional
Probab=33.77 E-value=60 Score=28.44 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=25.9
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhc------CeEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASREL------GFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~------GFF~v~nHGi 122 (303)
.||++.+... ...+.++.+.+++++. ..+.+.|||+
T Consensus 130 ~i~~~p~~~~----gs~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 130 KIPTLPFAPA----TSPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred CcceecccCC----CcHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 4677766542 3467888888888765 4888999995
No 53
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=33.21 E-value=2.2e+02 Score=25.02 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=34.3
Q ss_pred eeeecCCCCCCCCCcccccccccCC-----ceEEEecCCCCC-ceEE---eCCeEEEeccCCCcEEEeeCcc
Q 039774 239 MVGHYYPYCPQPDLTVGITSHTDPG-----PLTILLQDDKGG-LQIK---HGEEWVDVKPVPGALVINIGDI 301 (303)
Q Consensus 239 lr~~~YP~~~~~~~~~g~~~HtD~g-----~lTlL~qd~~~G-LQV~---~~g~Wv~V~p~pgalvVNvGD~ 301 (303)
..+|+|.+. . +++.|.|-. ..-+-+.=+.+. +++. +.+.+..+.-..|.++|.-|+.
T Consensus 118 ~LvN~Y~~G-----~-~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~s 183 (213)
T PRK15401 118 CLINRYAPG-----A-KLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPS 183 (213)
T ss_pred EEEEeccCc-----C-ccccccCCCcccCCCCEEEEeCCCCeEEEecccCCCCceEEEEeCCCCEEEECchH
Confidence 558999863 2 789999942 111111111111 2222 2256899999999999988874
No 54
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=32.23 E-value=58 Score=22.50 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcC--eEEEEc------CCCCHHHHHHHHHHHHH
Q 039774 99 PTIVEKIACASRELG--FFQVVN------HGIGVEVLERMVRAIKG 136 (303)
Q Consensus 99 ~~~~~~l~~A~~~~G--FF~v~n------HGi~~~l~~~~~~~~~~ 136 (303)
.+..+.|.+.++++| .+.++. |||+.+.+.++++..++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 346778888888887 666664 67888888888776543
No 55
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=31.60 E-value=50 Score=28.88 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=26.6
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHH--hhcCeEEEEcCCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACAS--RELGFFQVVNHGIG 123 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~--~~~GFF~v~nHGi~ 123 (303)
.||++.+... ...+.++++.+++ .+...+.+.|||+=
T Consensus 130 ~ip~~~y~~~----g~~ela~~i~~~l~~~~~~~vll~nHG~~ 168 (221)
T PRK06557 130 PIPVGPFALI----GDEAIGKGIVETLKGGRSPAVLMQNHGVF 168 (221)
T ss_pred CeeccCCcCC----CcHHHHHHHHHHhCcCCCCEEEECCCCce
Confidence 4777666532 3456778888888 67778899999963
No 56
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=30.69 E-value=65 Score=27.52 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=26.5
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHh---hcCeEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASR---ELGFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~---~~GFF~v~nHGi 122 (303)
.||+++. . ..-.++++.+.++++ +...+.|.|||+
T Consensus 126 ~vp~~~~-~----~gs~ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 126 TIPIFEN-T----QDIARLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred EEeeecC-C----CChHHHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 5888864 2 234678889999986 478899999996
No 57
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=30.00 E-value=68 Score=29.49 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=25.3
Q ss_pred HHHHHhhcCeEEEEcCCCCHHHHHHHHHHHHH
Q 039774 105 IACASRELGFFQVVNHGIGVEVLERMVRAIKG 136 (303)
Q Consensus 105 l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~ 136 (303)
..+++++.|||.|.| +|..++.++.+....
T Consensus 17 Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~~ 46 (284)
T PF03668_consen 17 ALRALEDLGYYCVDN--LPPSLLPQLIELLAQ 46 (284)
T ss_pred HHHHHHhcCeeEEcC--CcHHHHHHHHHHHHh
Confidence 467889999999998 999999998876653
No 58
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=29.83 E-value=61 Score=28.22 Aligned_cols=36 Identities=8% Similarity=0.242 Sum_probs=26.7
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
.||++.+... .-.++++.+.++..+...+.|.|||+
T Consensus 121 ~i~~v~y~~~----gs~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 121 NIPCVPYATF----GSTKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred CccccCCCCC----ChHHHHHHHHHHhhhCCEEehhcCCC
Confidence 3677666543 23467788888888889999999995
No 59
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=29.70 E-value=2.3e+02 Score=26.35 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=13.4
Q ss_pred CC-CCHHHHHHHHHHHHH
Q 039774 120 HG-IGVEVLERMVRAIKG 136 (303)
Q Consensus 120 HG-i~~~l~~~~~~~~~~ 136 (303)
|+ ++++..+.+++.++.
T Consensus 60 ~nfLs~~Ecd~Li~la~~ 77 (310)
T PLN00052 60 KGFLSDAECDHLVKLAKK 77 (310)
T ss_pred CCcCCHHHHHHHHHhccc
Confidence 44 688999999988865
No 60
>PRK05834 hypothetical protein; Provisional
Probab=28.91 E-value=61 Score=27.88 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=24.6
Q ss_pred CcceeeCCCCCCCCChHHHHHHHHHHHhhcC--eEEEEcCCC
Q 039774 83 VVPTIDLSGVDSDDLRPTIVEKIACASRELG--FFQVVNHGI 122 (303)
Q Consensus 83 ~iPvIDls~l~~~~~r~~~~~~l~~A~~~~G--FF~v~nHGi 122 (303)
.||+++..... ...+..++.+.+++++.. .+.|.|||+
T Consensus 121 ~ipv~~~~~~~--~~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 121 EISIYDPKDFD--DWYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeeecCccccc--hHHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 47777654321 112234677888888755 899999995
No 61
>PRK06661 hypothetical protein; Provisional
Probab=27.79 E-value=68 Score=28.38 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 99 PTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 99 ~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
.+.++.+.+++.+...+.+.|||+
T Consensus 137 ~~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 137 DKQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred hhHHHHHHHHhCCCCEEEECCCCC
Confidence 466888999999999999999995
No 62
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=27.39 E-value=1.5e+02 Score=24.62 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHhhcCeEEEEc-CCCCHHHHHHHHHHHHH
Q 039774 98 RPTIVEKIACASRELGFFQVVN-HGIGVEVLERMVRAIKG 136 (303)
Q Consensus 98 r~~~~~~l~~A~~~~GFF~v~n-HGi~~~l~~~~~~~~~~ 136 (303)
..+.+++|.+.++++-.++|++ +|++...++++.+..|.
T Consensus 3 K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~ 42 (163)
T cd05796 3 KQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD 42 (163)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcC
Confidence 4678899999999998777775 79999999998887654
No 63
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=27.34 E-value=1.1e+02 Score=26.60 Aligned_cols=47 Identities=28% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCCcccccccccCCceEEEe-cCCCCCceEE--eCCeEEEeccCCCcEEEeeCccC
Q 039774 250 PDLTVGITSHTDPGPLTILL-QDDKGGLQIK--HGEEWVDVKPVPGALVINIGDIL 302 (303)
Q Consensus 250 ~~~~~g~~~HtD~g~lTlL~-qd~~~GLQV~--~~g~Wv~V~p~pgalvVNvGD~L 302 (303)
|.+.+|++ |.-|-++ +++-||-|+. +.-.|.+.. ...-++...||.+
T Consensus 150 PaGSVgIa-----g~qt~IYp~~sPGGW~iIGrTp~~lfd~~-~~~p~ll~~GD~V 199 (202)
T TIGR00370 150 PAGSVGIG-----GLQTGVYPISTPGGWQLIGKTPLALFDPQ-ENPPTLLRAGDIV 199 (202)
T ss_pred CCceeEEc-----ccceEEEccCCCCcceEeeecchhhhCCC-CCCCcccCCCCEE
Confidence 45566665 3466666 4778899984 334454432 3345788888865
No 64
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=26.86 E-value=78 Score=21.15 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhh
Q 039774 204 HHVKQLGELLFGLLCEGLGLKTDKL 228 (303)
Q Consensus 204 ~~~~~l~~~Ll~~la~~Lgl~~~~~ 228 (303)
++-.+|+..|..++++.||.+++.+
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~i 38 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPERI 38 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGE
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCeE
Confidence 4567889999999999999987643
No 65
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=26.86 E-value=70 Score=27.75 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=26.3
Q ss_pred Ccceee-CCCCCCCCChHHHHHHHHHHHh-hcCeEEEEcCCC
Q 039774 83 VVPTID-LSGVDSDDLRPTIVEKIACASR-ELGFFQVVNHGI 122 (303)
Q Consensus 83 ~iPvID-ls~l~~~~~r~~~~~~l~~A~~-~~GFF~v~nHGi 122 (303)
.||+++ +. .-+++++.+.++++ +...+.+.|||+
T Consensus 137 ~vpv~~~~~------~~~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 137 HIPIIENHA------DIPTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred EEEEecCCC------CHHHHHHHHHHHhccCCcEEEECCCce
Confidence 478875 32 23578899999987 888899999995
No 66
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=26.60 E-value=51 Score=28.49 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=27.5
Q ss_pred CCcceeeCCCCCCCCChHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 82 DVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 82 ~~iPvIDls~l~~~~~r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
..||++++.... ...++.++.+.+++.+.-.+.+.|||+
T Consensus 121 ~~ip~~~~~~~~--~~~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 121 GDIPCTPYMTPE--TGEDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CCeeecCCcCCC--ccHHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 358888876531 134456667777777888899999995
No 67
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=26.25 E-value=1.6e+02 Score=24.79 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhhcCeEEEEc-CCCCHHHHHHHHHHHHH
Q 039774 98 RPTIVEKIACASRELGFFQVVN-HGIGVEVLERMVRAIKG 136 (303)
Q Consensus 98 r~~~~~~l~~A~~~~GFF~v~n-HGi~~~l~~~~~~~~~~ 136 (303)
..+.+++|.+.+.++..++|++ .|++...+.++.+..++
T Consensus 3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 4678899999999999888875 68999988888887765
No 68
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=25.99 E-value=82 Score=21.45 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhh
Q 039774 204 HHVKQLGELLFGLLCEGLGLKTDKL 228 (303)
Q Consensus 204 ~~~~~l~~~Ll~~la~~Lgl~~~~~ 228 (303)
++-++|...|.+++++.||++++.+
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~v 39 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKERV 39 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 4567889999999999999998654
No 69
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=25.63 E-value=82 Score=20.97 Aligned_cols=24 Identities=33% Similarity=0.684 Sum_probs=20.8
Q ss_pred CCceEEeCCeEEEeccCCCcEEEee
Q 039774 274 GGLQIKHGEEWVDVKPVPGALVINI 298 (303)
Q Consensus 274 ~GLQV~~~g~Wv~V~p~pgalvVNv 298 (303)
+|||+++ |=...|.|..+.++|||
T Consensus 19 ~Gle~~r-G~~qSvRp~~~~l~lNv 42 (52)
T PF08699_consen 19 GGLEAWR-GFFQSVRPTQGGLLLNV 42 (52)
T ss_dssp TTEEEEE-EEEEEEEEETTEEEEEE
T ss_pred CcEEEeE-eEEeeeEEcCCCCEEEE
Confidence 5899987 67888999999999998
No 70
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=25.43 E-value=1.8e+02 Score=23.75 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhhcCeEEEEcC-CCCHHHHHHHHHHHHH
Q 039774 98 RPTIVEKIACASRELGFFQVVNH-GIGVEVLERMVRAIKG 136 (303)
Q Consensus 98 r~~~~~~l~~A~~~~GFF~v~nH-Gi~~~l~~~~~~~~~~ 136 (303)
....+++|.+.+++..+++++++ |++.+.+.++....+.
T Consensus 5 K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 5 KEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 45677888888888887777764 7888777777766553
No 71
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=25.12 E-value=1e+02 Score=26.39 Aligned_cols=38 Identities=32% Similarity=0.349 Sum_probs=22.7
Q ss_pred CceEEEecCCCCCceE-------EeCCeEEEeccCCCcEEEeeCcc
Q 039774 263 GPLTILLQDDKGGLQI-------KHGEEWVDVKPVPGALVINIGDI 301 (303)
Q Consensus 263 g~lTlL~qd~~~GLQV-------~~~g~Wv~V~p~pgalvVNvGD~ 301 (303)
|-=.+|+|+. .|.+| ...|.-+-|||-=++.+||+||-
T Consensus 92 G~g~~lLq~~-~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~ 136 (182)
T PF06560_consen 92 GEGLILLQKE-EGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDE 136 (182)
T ss_dssp SSEEEEEE-T-TS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS
T ss_pred CEEEEEEEec-CCCcceeEEEEEeCCCCEEEECCCceEEEEECCCC
Confidence 3446778863 45222 13489999999999999999983
No 72
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=24.32 E-value=92 Score=20.79 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhh
Q 039774 204 HHVKQLGELLFGLLCEGLGLKTDKL 228 (303)
Q Consensus 204 ~~~~~l~~~Ll~~la~~Lgl~~~~~ 228 (303)
++-++|...|.+.+++.+|++++.+
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (61)
T PRK02220 15 EQLKALVKDVTAAVSKNTGAPAEHI 39 (61)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 4567889999999999999987654
No 73
>PRK07490 hypothetical protein; Provisional
Probab=22.62 E-value=92 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhhcCeEEEEcCCC
Q 039774 98 RPTIVEKIACASRELGFFQVVNHGI 122 (303)
Q Consensus 98 r~~~~~~l~~A~~~~GFF~v~nHGi 122 (303)
..+.++.|.+++.+.-.+.+.|||+
T Consensus 145 ~~ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 145 LEEEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred cHHHHHHHHHHhCcCCEEEECCCCc
Confidence 4578889999999999999999995
No 74
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=22.44 E-value=93 Score=21.01 Aligned_cols=25 Identities=4% Similarity=0.030 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhh
Q 039774 204 HHVKQLGELLFGLLCEGLGLKTDKL 228 (303)
Q Consensus 204 ~~~~~l~~~Ll~~la~~Lgl~~~~~ 228 (303)
++-++|+..|.+++++.+|.|++.+
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~v 39 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEAI 39 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceE
Confidence 4567899999999999999987654
No 75
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=22.41 E-value=1e+02 Score=20.23 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhh
Q 039774 204 HHVKQLGELLFGLLCEGLGLKTDKL 228 (303)
Q Consensus 204 ~~~~~l~~~Ll~~la~~Lgl~~~~~ 228 (303)
++-++|+..|.+++++.+|.+++.+
T Consensus 14 eqk~~l~~~i~~~l~~~~g~~~~~v 38 (58)
T cd00491 14 EQKRELIERVTEAVSEILGAPEATI 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 5667889999999999999987543
No 76
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=22.35 E-value=1.1e+02 Score=20.45 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhh
Q 039774 204 HHVKQLGELLFGLLCEGLGLKTDKL 228 (303)
Q Consensus 204 ~~~~~l~~~Ll~~la~~Lgl~~~~~ 228 (303)
++-.+|+..|.+++++.||.+++.+
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHE
Confidence 4567889999999999999988654
No 77
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=22.20 E-value=1e+02 Score=20.68 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhh
Q 039774 204 HHVKQLGELLFGLLCEGLGLKTDKL 228 (303)
Q Consensus 204 ~~~~~l~~~Ll~~la~~Lgl~~~~~ 228 (303)
++-.+|+..|.+++++.||++++.+
T Consensus 15 eqK~~l~~~it~~l~~~lg~~~~~v 39 (63)
T TIGR00013 15 EQKRQLIEGVTEAMAETLGANLESI 39 (63)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccE
Confidence 4567888999999999999987643
No 78
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.92 E-value=64 Score=20.22 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=14.7
Q ss_pred ccCCceEEEecCCCCCceEEeC
Q 039774 260 TDPGPLTILLQDDKGGLQIKHG 281 (303)
Q Consensus 260 tD~g~lTlL~qd~~~GLQV~~~ 281 (303)
-.+|.+||..||+. =.||.+.
T Consensus 13 i~yGsV~iiiqdG~-vvQIe~~ 33 (38)
T PF10055_consen 13 IRYGSVTIIIQDGR-VVQIEKT 33 (38)
T ss_pred CCcceEEEEEECCE-EEEEEhh
Confidence 35799999999863 2566543
No 79
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=21.75 E-value=2.8e+02 Score=27.26 Aligned_cols=77 Identities=10% Similarity=0.092 Sum_probs=47.6
Q ss_pred chhhhHHhhhhhcccccchHHHHhcCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcceeeCCCCC---CCCChHHHHHH
Q 039774 28 ESYDRAKEVKRFDESKVGVKGLVDLGVTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVD---SDDLRPTIVEK 104 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~vP~~f~~p~~~~~~~~~~~~~~~~~~~iPvIDls~l~---~~~~r~~~~~~ 104 (303)
+.+||++++.+..+... -+...|...+.+.+..... =||..+. .......+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~~---v~~~~gf~~~ep~lP~~~~--------------------~~~~~~~TiG~~~~~~~Led~ 248 (453)
T TIGR02367 192 SQLDRLEALLNPEDEIS---LNMAKPFRELEPELLSRRK--------------------KDFQQIYAEDREDYLGKLERD 248 (453)
T ss_pred HHHHHHHHhcCCchhhh---hHHhccccccCcccCcccc--------------------cccccccccCcccHHHHHHHH
Confidence 37899998887766442 2445666666554431100 1222221 12345677889
Q ss_pred HHHHHhhcCeEEEEcCCCC-HHHH
Q 039774 105 IACASRELGFFQVVNHGIG-VEVL 127 (303)
Q Consensus 105 l~~A~~~~GFF~v~nHGi~-~~l~ 127 (303)
|++.+..+||..|.+.-+. .+..
T Consensus 249 IRevfvg~GFqEV~TPtLt~eE~~ 272 (453)
T TIGR02367 249 ITKFFVDRGFLEIKSPILIPAEYI 272 (453)
T ss_pred HHHHHHHCCCEEEECCeecchHHH
Confidence 9999999999999998774 3443
No 80
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=21.64 E-value=2.7e+02 Score=23.16 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhhcCeEEEEcC-CCCHHHHHHHHHHHHH
Q 039774 98 RPTIVEKIACASRELGFFQVVNH-GIGVEVLERMVRAIKG 136 (303)
Q Consensus 98 r~~~~~~l~~A~~~~GFF~v~nH-Gi~~~l~~~~~~~~~~ 136 (303)
..+.+++|.+.+++.-+++++++ |++...+.++....+.
T Consensus 6 K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 6 KKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 44566777777777766666653 6776666666665554
No 81
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=21.34 E-value=78 Score=23.21 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=17.2
Q ss_pred HHHHHHHhhcCeEEEEcCCCC
Q 039774 103 EKIACASRELGFFQVVNHGIG 123 (303)
Q Consensus 103 ~~l~~A~~~~GFF~v~nHGi~ 123 (303)
+.|-.-|-+-||.||.-|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 458889999999999877654
No 82
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=20.53 E-value=1.5e+02 Score=21.36 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhcCeEEEEcCCCCHHHHHHHHHHH
Q 039774 99 PTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAI 134 (303)
Q Consensus 99 ~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~ 134 (303)
.++++.|.++++.+||..=..||.-.+-.++++..-
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~~ 50 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDALRAW 50 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHHH
Confidence 468899999999999988888887666555555433
No 83
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=20.50 E-value=2.9e+02 Score=24.61 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHhhcC-----eEEEEc------CCCCHHHHHHHHHHHHHH
Q 039774 96 DLRPTIVEKIACASRELG-----FFQVVN------HGIGVEVLERMVRAIKGF 137 (303)
Q Consensus 96 ~~r~~~~~~l~~A~~~~G-----FF~v~n------HGi~~~l~~~~~~~~~~F 137 (303)
-+|..++.+|.+...++| |.||-. ||++++.+.++....+++
T Consensus 100 lDr~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~ 152 (228)
T COG0325 100 LDRLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEELDELAQEVQEL 152 (228)
T ss_pred cCHHHHHHHHHHHHHhCCCCceEEEEEecCCccccCCCCHHHHHHHHHHHHhC
Confidence 467788888888888877 666653 788887777777766544
No 84
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=20.49 E-value=33 Score=29.96 Aligned_cols=41 Identities=27% Similarity=0.474 Sum_probs=33.0
Q ss_pred cCCceEEEec---CCCCCceEEe---CCeEEEeccCCCcEEEeeCcc
Q 039774 261 DPGPLTILLQ---DDKGGLQIKH---GEEWVDVKPVPGALVINIGDI 301 (303)
Q Consensus 261 D~g~lTlL~q---d~~~GLQV~~---~g~Wv~V~p~pgalvVNvGD~ 301 (303)
..+-||+|-+ +..||.+..+ ++.|+.+.+..+.+||-+|+.
T Consensus 106 ~v~WlT~Lg~~~l~~LGG~~~lr~~L~~~~~~i~~~~~g~vI~aG~~ 152 (208)
T PF11876_consen 106 GVNWLTFLGDPLLEKLGGEDALRSALPGPWIRIHPYGGGVVIQAGEW 152 (208)
T ss_pred CcchhheeCHHHHHhhccHHHHHhhCCCCceEEEECCCcEEEEeCCC
Confidence 4578999965 4678887543 489999999999999999974
No 85
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=20.44 E-value=55 Score=21.55 Aligned_cols=38 Identities=18% Similarity=0.029 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhcc
Q 039774 195 CRKEAVEWNHHVKQLGELLFGLLCEGLGLKTDKLKENT 232 (303)
Q Consensus 195 fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~ 232 (303)
-...+++++.........-...||..|||+...+...|
T Consensus 11 q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF 48 (57)
T PF00046_consen 11 QLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWF 48 (57)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccccccccccccccCH
Confidence 35788888888888888889999999999987655443
Done!