BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039776
(922 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/661 (39%), Positives = 383/661 (57%), Gaps = 35/661 (5%)
Query: 256 MYIPGIKNVLDTKIVNMLTI--GEIIRWVLSTPVQFIVGRRFYTGSYKALRIGSPNMDVL 313
+Y+ VL + + +++ + ++ +++ P F G + ++ ALR + NMDV+
Sbjct: 88 LYVAAFAGVLLLFLAHFISLPYEDFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVM 147
Query: 314 IALGTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLAKGKTSEAIA 373
++G AA+ SV S Y F+ETS +L++F+LLG+ LE AK +T EAI
Sbjct: 148 YSMGVGAAFLASVLSTAGVLPREY----SFYETSVLLLAFLLLGRTLEARAKSRTGEAIK 203
Query: 374 KLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSYVN 433
KL+ L + A ++ +E V EE + D++ + PG K+ DG V+ G+SYV+
Sbjct: 204 KLVGLQAKTAVVIRDGKEIAVPVEE------VAVGDIVIVRPGEKIPVDGVVVEGESYVD 257
Query: 434 ESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPV 493
ESMI+GE PV K +GD V G T+N GVL I+ATRVG E+ LAQIV+LVE A +K P+
Sbjct: 258 ESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPI 317
Query: 494 QKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVI 553
Q+ AD+ YF+P V++++ S ++ WY H+ A I+V+V+
Sbjct: 318 QRLADKVVAYFIPTVLLVAISAFIYWYFIA--HA-----------PLLFAFTTLIAVLVV 364
Query: 554 ACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVN 613
ACPCA GLATPTA+ VG G GA G+LIK ALE KV ++FDKTGT+T GKP V +
Sbjct: 365 ACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTD 424
Query: 614 TKLLKNMVLRDFYELVAATEAIIEY----ANKFREDEENPMWPEAQDFVSITGHGVKAIV 669
L N R+ L A E E+ A + E E + I G GV A
Sbjct: 425 LVPL-NGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA-- 481
Query: 670 RNKEIMVGNKSLMLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPG 729
I+VGNK LM D + + + E L + E A+T ++V+ +G + G++++SD LK
Sbjct: 482 --DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKES 539
Query: 730 AHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYT 789
A + LK M I+ ++TGDNW +A++I+ E+ ++ VIAE P QK+E+V++LQA
Sbjct: 540 AKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK-EV 598
Query: 790 VAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRI 849
VA VGDGIND+PAL AD+G+A+G+G+D+A+E+ DIVL++ +L D + AI LSRKT S+I
Sbjct: 599 VAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 658
Query: 850 RINYIWALGYNLLGITIAAGAIFPTTRFRLPPWIAGAAMATXXXXXXXXXXXXKNYKKPK 909
+ N WAL YN++ I AAG ++P P AG AMA +NY P
Sbjct: 659 KQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYVPPI 718
Query: 910 R 910
R
Sbjct: 719 R 719
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
+R+ +TC C ++E +++GV+ V LATE A + +D + + + + IED G+
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGF 55
MTC+ C SIE A+ L G+ + V++ A + F ++ ETI IE +G+
Sbjct: 11 MTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 426 bits (1096), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/661 (39%), Positives = 382/661 (57%), Gaps = 35/661 (5%)
Query: 256 MYIPGIKNVLDTKIVNMLTIG--EIIRWVLSTPVQFIVGRRFYTGSYKALRIGSPNMDVL 313
+Y+ VL + + +++ + ++ +++ P F G + ++ ALR + NMDV+
Sbjct: 10 LYVAAFAGVLLLFLAHFISLPYEDFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVM 69
Query: 314 IALGTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLAKGKTSEAIA 373
++G AA+ SV S Y F+ETS +L++F+LLG+ LE AK +T EAI
Sbjct: 70 YSMGVGAAFLASVLSTAGVLPREY----SFYETSVLLLAFLLLGRTLEARAKSRTGEAIK 125
Query: 374 KLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSYVN 433
KL+ L + A ++ +E V EE + D++ + PG K+ DG V+ G+SYV+
Sbjct: 126 KLVGLQAKTAVVIRDGKEIAVPVEE------VAVGDIVIVRPGEKIPVDGVVVEGESYVD 179
Query: 434 ESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPV 493
ESMI+GE PV K +GD V G T+N GVL I+ATRVG E+ LAQIV+LVE A +K P+
Sbjct: 180 ESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPI 239
Query: 494 QKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVI 553
Q+ AD+ YF+P V++++ S ++ WY + A I+V+V+
Sbjct: 240 QRLADKVVAYFIPTVLLVAISAFIYWYFIAH-------------APLLFAFTTLIAVLVV 286
Query: 554 ACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVN 613
ACPCA GLATPTA+ VG G GA G+LIK ALE KV ++FDKTGT+T GKP V +
Sbjct: 287 ACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTD 346
Query: 614 TKLLKNMVLRDFYELVAATEAIIEY----ANKFREDEENPMWPEAQDFVSITGHGVKAIV 669
L N R+ L A E E+ A + E E + I G GV A
Sbjct: 347 LVPL-NGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA-- 403
Query: 670 RNKEIMVGNKSLMLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPG 729
I+VGNK LM D + + + E L + E A+T ++V+ +G + G++++SD LK
Sbjct: 404 --DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKES 461
Query: 730 AHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYT 789
A + LK M I+ ++TGDNW +A++I+ E+ ++ VIAE P QK+E+V++LQA
Sbjct: 462 AKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK-EV 520
Query: 790 VAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRI 849
VA VGDGIND+PAL AD+G+A+G+G+D+A+E+ DIVL++ +L D + AI LSRKT S+I
Sbjct: 521 VAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 580
Query: 850 RINYIWALGYNLLGITIAAGAIFPTTRFRLPPWIAGAAMATXXXXXXXXXXXXKNYKKPK 909
+ N WAL YN++ I AAG ++P P AG AMA +NY P
Sbjct: 581 KQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYVPPI 640
Query: 910 R 910
R
Sbjct: 641 R 641
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 252/669 (37%), Positives = 375/669 (56%), Gaps = 48/669 (7%)
Query: 236 RSFLWSLAFTIPVFLTSMVFMYIPGIKNVLDTKIVNMLTIGEIIRWVLSTPVQFIVGRRF 295
R F +L TIPV + M G+K+ + + I+ +L+TPV G F
Sbjct: 83 RRFWIALMLTIPVVILEMGGH---GLKHFISGNGSSW------IQLLLATPVVLWGGWPF 133
Query: 296 YTGSYKALRIGSPNMDVLIALGTNAAYFYSVYSVLRAALSPY-FIGKD-----FFETSSM 349
+ +++L+ G NM LIA+G A+ YS+ +VL + P+ F ++ +FE +++
Sbjct: 134 FKRGWQSLKTGQLNMFTLIAMGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFEAAAV 193
Query: 350 LISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRND 409
+ + +LLG+ LE+ A+ +T AI LL L PE+A + E+G SEEE+ + D
Sbjct: 194 ITTLVLLGQVLELKAREQTGSAIRALLKLVPESAH--RIKEDG---SEEEVSLDNVAVGD 248
Query: 410 VIKIIPGAKVASDGYVLWGKSYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATR 469
++++ PG K+ DG V G+S+V+ESM+TGE PVAK V G T+N+ G +KA
Sbjct: 249 LLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQTGSFVMKALH 308
Query: 470 VGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYP 529
VGS++ LA+IV++V AQ ++AP+Q+ AD S +FVP VI+++ +++ W L G
Sbjct: 309 VGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLG------ 362
Query: 530 ESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALES 589
P S+ L +SV++IACPCALGLATP ++MVG G GA GVLIK +ALE
Sbjct: 363 ----PQPALSY--GLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALER 416
Query: 590 THKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYE---------LVAATEAIIEYAN 640
KVN +V DKTGT+T G P L +V DF E L +E + A
Sbjct: 417 MEKVNTLVVDKTGTLTEGHPK------LTRIVTDDFVEDNALALAAALEHQSEHPLANAI 470
Query: 641 KFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDNNIDIPPDTEEMLTET 700
E+ + F + TG GV V + +GN LM ++ D P E+ E
Sbjct: 471 VHAAKEKGLSLGSVEAFEAPTGKGVVGQVDGHHVAIGNARLMQEHGGDNAPLFEKA-DEL 529
Query: 701 EGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIAS 760
G + + ++VDG+ +L + DP+K I L+ I +++TGD+ TA+++A
Sbjct: 530 RGKGASVMFMAVDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAG 589
Query: 761 EVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAI 820
+GI+ V+AE PE K+ V EL+ G VAM GDG+ND+PAL AD+G+A+G GTD+AI
Sbjct: 590 TLGIKKVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMGTGTDVAI 649
Query: 821 EAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAAGAIFPTTRFRLP 880
E+A + L+ +L A LS T S IR N +A YN+LG+ +AAG ++P T L
Sbjct: 650 ESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNVLGVPLAAGVLYPLTGLLLS 709
Query: 881 PWIAGAAMA 889
P IA AAMA
Sbjct: 710 PMIAAAAMA 718
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 174/285 (61%), Gaps = 10/285 (3%)
Query: 570 GTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELV 629
G+ GA G+LIK ALE KV ++FDKTGT+T GKP V + L N R+ L
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLA 67
Query: 630 AATEAIIEY----ANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDN 685
A E E+ A + E E + I G GV A I+VGNK LM D
Sbjct: 68 AIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA----DGILVGNKRLMEDF 123
Query: 686 NIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSI 745
+ + + E L + E A+T ++V+ +G + G++++SD LK A + LK M I+
Sbjct: 124 GVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVG 183
Query: 746 LVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVA 805
++TGDNW +A++I+ E+ ++ VIAE P QK+E+V++LQA VA VGDGIND+PAL
Sbjct: 184 MITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQ 242
Query: 806 ADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIR 850
AD+G+A+G+G+D+A+E+ DIVL++ +L D + AI LSRKT S+I+
Sbjct: 243 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 175/290 (60%), Gaps = 20/290 (6%)
Query: 570 GTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELV 629
G+ GA G+LIK ALE KV ++FDKTGT+T GKP V + L N R+ L
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLA 67
Query: 630 AATE---------AIIEYANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKS 680
A E AI++ A E E + I G GV A I+VGNK
Sbjct: 68 AIAERRSEQPIAEAIVKKAL-----EHGIELGEPEKVEVIAGEGVVA----DGILVGNKR 118
Query: 681 LMLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSM 740
LM D + + + E L + E A+T ++V+ +G + G++++SD LK A + LK M
Sbjct: 119 LMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRM 178
Query: 741 QIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDS 800
I+ ++TGDNW +A++I+ E+ ++ VIAE P QK+E+V++LQA VA VGDGIND+
Sbjct: 179 GIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDA 237
Query: 801 PALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIR 850
PAL AD+G+A+G+G+D+A+E+ DIVL++ +L D + AI LSRKT S+I+
Sbjct: 238 PALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 161/271 (59%), Gaps = 10/271 (3%)
Query: 582 KGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAATEAIIEY--- 638
K ALE KV ++FDKTGT+T GKP V + L N R+ L A E E+
Sbjct: 1 KNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLAAIAERRSEHPIA 59
Query: 639 -ANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDNNIDIPPDTEEML 697
A + E E + I G GV A I+VGNK L D + + + E L
Sbjct: 60 EAIVKKALEHGIELGEPEKVEVIAGEGVVA----DGILVGNKRLXEDFGVAVSNEVELAL 115
Query: 698 TETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKS 757
+ E A+T ++V+ +G + G++++SD LK A + LK I+ +TGDNW +A++
Sbjct: 116 EKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEA 175
Query: 758 IASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTD 817
I+ E+ ++ VIAE P QK+E+V++LQA VA VGDGIND+PAL AD+G+A+G+G+D
Sbjct: 176 ISRELNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVGSGSD 234
Query: 818 IAIEAADIVLMKSNLEDEITAIDLSRKTFSR 848
+A+E+ DIVL++ +L D + AI LSRKT S+
Sbjct: 235 VAVESGDIVLIRDDLRDVVAAIQLSRKTXSK 265
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 167/276 (60%), Gaps = 10/276 (3%)
Query: 585 QALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAATEAIIEY--ANKF 642
QA E + ++FDKTGT+T G+ V + N + ++ A+ EA E+ A
Sbjct: 5 QAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGF-NHSEDELLQIAASLEARSEHPIAAAI 63
Query: 643 REDEENPMW--PEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDNNIDIPPDTEEMLTET 700
E+ E + E ++F +I G GV+ IV + MV + + + I T+E + +
Sbjct: 64 VEEAEKRGFGLTEVEEFRAIPGKGVEGIVNGRRYMVVSPGYIRELGIK----TDESVEKL 119
Query: 701 EGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIAS 760
+ +T + + +GE++GV++++D ++P + IS LK++ I+ +++TGDN AK +A
Sbjct: 120 KQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAE 179
Query: 761 EVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAI 820
E+G++ AE P +KAEKV+E+Q Y AMVGDG+ND+PAL ADVG+AIGAGTD+A+
Sbjct: 180 ELGLDDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQADVGIAIGAGTDVAV 238
Query: 821 EAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWA 856
E ADIVL++++ D ++LSRKT+S+ W+
Sbjct: 239 ETADIVLVRNDPRDVAAIVELSRKTYSKFHGLSAWS 274
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 166/269 (61%), Gaps = 10/269 (3%)
Query: 585 QALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAATEAIIEY--ANKF 642
QA E + ++FDKTGT+T G+ V + N + ++ A+ EA E+ A
Sbjct: 5 QAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGF-NHSEDELLQIAASLEARSEHPIAAAI 63
Query: 643 REDEENPMW--PEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDNNIDIPPDTEEMLTET 700
E+ E + E ++F +I G GV+ IV + MV + + + I T+E + +
Sbjct: 64 VEEAEKRGFGLTEVEEFRAIPGKGVEGIVNGRRYMVVSPGYIRELGIK----TDESVEKL 119
Query: 701 EGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIAS 760
+ +T + + +GE++GV++++D ++P + IS LK++ I+ +++TGDN AK +A
Sbjct: 120 KQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAE 179
Query: 761 EVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAI 820
E+G++ AE P +KAEKV+E+Q Y AMVGDG+ND+PAL ADVG+AIGAGTD+A+
Sbjct: 180 ELGLDDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQADVGIAIGAGTDVAV 238
Query: 821 EAADIVLMKSNLEDEITAIDLSRKTFSRI 849
E ADIVL++++ D ++LSRKT+S++
Sbjct: 239 ETADIVLVRNDPRDVAAIVELSRKTYSKL 267
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 89/119 (74%)
Query: 369 SEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWG 428
SEA+AKL+ L AT++T+D + ++SEE++D L+QR D+IK++PG K DG V+ G
Sbjct: 6 SEALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEG 65
Query: 429 KSYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQ 487
S V+ES+ITGEA PVAK+ G TV G++N+NG L I AT VG+++ L+QIV+LVE AQ
Sbjct: 66 HSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQ 124
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 134/262 (51%), Gaps = 36/262 (13%)
Query: 577 QGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAA----- 631
+G++IK E +++ I+FDKTGT+T G P+V T+ + + + + V A
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFDKTGTLTYGTPIV--TQFIGDSLSLAYAASVEALSSHP 69
Query: 632 -TEAIIEYANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDNNIDIP 690
+AI++YA E+ E +DF I+G GV+ + +K I V +NN DI
Sbjct: 70 IAKAIVKYAK-----EQGVKILEVKDFKEISGIGVRGKISDKIIEVKK----AENNNDIA 120
Query: 691 PDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGD 750
V ++GE +ISD +P + LK+ ++ I+++GD
Sbjct: 121 -------------------VYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGD 161
Query: 751 NWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGM 810
K ++ E+ I+ + PE K +E+L+ +G V M+GDG+ND+ AL ADV +
Sbjct: 162 KEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 811 AIGAGTDIAIEAADIVLMKSNL 832
A+G G DI+ ADI+L+ +++
Sbjct: 222 AMGNGVDISKNVADIILVSNDI 243
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 134/262 (51%), Gaps = 36/262 (13%)
Query: 577 QGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAA----- 631
+G++IK E +++ I+F+KTGT+T G P+V T+ + + + + V A
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIV--TQFIGDSLSLAYAASVEALSSHP 69
Query: 632 -TEAIIEYANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDNNIDIP 690
+AI++YA E+ E +DF I+G GV+ + +K I V +NN DI
Sbjct: 70 IAKAIVKYAK-----EQGVKILEVKDFKEISGIGVRGKISDKIIEVKK----AENNNDIA 120
Query: 691 PDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGD 750
V ++GE +ISD +P + LK+ ++ I+++GD
Sbjct: 121 -------------------VYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGD 161
Query: 751 NWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGM 810
K ++ E+ I+ + PE K +E+L+ +G V M+GDG+ND+ AL ADV +
Sbjct: 162 KEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 811 AIGAGTDIAIEAADIVLMKSNL 832
A+G G DI+ ADI+L+ +++
Sbjct: 222 AMGNGVDISKNVADIILVSNDI 243
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 134/262 (51%), Gaps = 36/262 (13%)
Query: 577 QGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAA----- 631
+G++IK E +++ I+F+KTGT+T G P+V T+ + + + + V A
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFNKTGTLTYGTPIV--TQFIGDSLSLAYAASVEALSSHP 69
Query: 632 -TEAIIEYANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDNNIDIP 690
+AI++YA E+ E +DF I+G GV+ + +K I V +NN DI
Sbjct: 70 IAKAIVKYAK-----EQGVKILEVKDFKEISGIGVRGKISDKIIEVKK----AENNNDIA 120
Query: 691 PDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGD 750
V ++GE +ISD +P + LK+ ++ I+++GD
Sbjct: 121 -------------------VYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGD 161
Query: 751 NWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGM 810
K ++ E+ I+ + PE K +E+L+ +G V M+GDG+ND+ AL ADV +
Sbjct: 162 KEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 811 AIGAGTDIAIEAADIVLMKSNL 832
A+G G DI+ ADI+L+ +++
Sbjct: 222 AMGNGVDISKNVADIILVSNDI 243
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Query: 370 EAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGK 429
EAI KL+ L + A ++ +E V EE + D++ + PG K+ DG V+ G+
Sbjct: 1 EAIKKLVGLQAKTAVVIRDGKEIAVPVEE------VAVGDIVIVRPGEKIPVDGVVVEGE 54
Query: 430 SYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESA 486
SYV+ESMI+GE PV K +GD V G T+N GVL I+ATRVG E+ LAQIV+LVE A
Sbjct: 55 SYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDA 111
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 79/123 (64%), Gaps = 12/123 (9%)
Query: 717 TGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQK 776
TG L+ LK A + LK I+ +TGDNW +A++I+ E+ ++ VIAE P QK
Sbjct: 17 TGTLT---KLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNLDLVIAEVLPHQK 73
Query: 777 AEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEI 836
+E+V++LQA VA VGDGIND+PAL AD+G+A+G+G DIVL++ +L D +
Sbjct: 74 SEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVGSG--------DIVLIRDDLRDVV 124
Query: 837 TAI 839
AI
Sbjct: 125 AAI 127
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 586 ALESTHKVNCIVFDKTGTMT 605
ALE KV ++FDKTGT+T
Sbjct: 2 ALEVAEKVTAVIFDKTGTLT 21
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 38/201 (18%)
Query: 688 DIPPDTEEM-LTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSIL 746
D PP EEM L ++ + E D GV+ + DP + G I + + IR I+
Sbjct: 568 DTPPKREEMVLDDSSRFMEYE----TDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIM 623
Query: 747 VTGDNWGTAKSIASEVGI-------------------------------ETVIAEAKPEQ 775
+TGDN GTA +I +GI A +P
Sbjct: 624 ITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSH 683
Query: 776 KAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDE 835
K++ VE LQ+ AM GDG+ND+PAL A++G+A+G+GT +A A+++VL N
Sbjct: 684 KSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTI 743
Query: 836 ITAIDLSRKTFSRIR--INYI 854
+ A++ R ++ ++ I Y+
Sbjct: 744 VAAVEEGRAIYNNMKQFIRYL 764
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 123/277 (44%), Gaps = 30/277 (10%)
Query: 349 MLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRN 408
+LI+ ++G + E A+ AI L + PE + D + S + I +R I
Sbjct: 97 ILIANAIVGVWQERNAEN----AIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 148
Query: 409 DVIKIIPGAKVASDGYVLWGKS---YVNESMITGEAWPVAK--------------REGDT 451
D++++ G KV +D +L KS V++S++TGE+ V K ++
Sbjct: 149 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 452 VTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIIL 511
+G + L I AT G + + +I + + + K P+Q+ D + ++ ++
Sbjct: 209 FSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLI 267
Query: 512 SFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGT 571
+ WL N + SWI ++ F++A+ ++ + P L T + +GT
Sbjct: 268 CVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAI----PEGLPAVITTCLALGT 323
Query: 572 GVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGK 608
A + +++ ++E+ + I KTGT+T +
Sbjct: 324 RRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQ 360
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 38/201 (18%)
Query: 688 DIPPDTEEM-LTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSIL 746
D PP EEM L ++ + E D GV+ + DP + G I + + IR I+
Sbjct: 569 DTPPKREEMVLDDSSRFMEYE----TDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIM 624
Query: 747 VTGDNWGTAKSIASEVGI-------------------------------ETVIAEAKPEQ 775
+TGDN GTA +I +GI A +P
Sbjct: 625 ITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSH 684
Query: 776 KAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDE 835
K++ VE LQ+ AM GDG+ND+PAL A++G+A+G+GT +A A+++VL N
Sbjct: 685 KSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTI 744
Query: 836 ITAIDLSRKTFSRIR--INYI 854
+ A++ R ++ ++ I Y+
Sbjct: 745 VAAVEEGRAIYNNMKQFIRYL 765
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 124/277 (44%), Gaps = 30/277 (10%)
Query: 349 MLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRN 408
+LI+ ++G + E A+ AI L + PE + D + S + I +R I
Sbjct: 98 ILIANAIVGVWQERNAEN----AIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 149
Query: 409 DVIKIIPGAKVASDGYVLWGKS---YVNESMITGEAWPVAK--------------REGDT 451
D++++ G KV +D +L KS V++S++TGE+ V K ++
Sbjct: 150 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 209
Query: 452 VTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIIL 511
+G + L I AT G + + +I + + + K P+Q+ D + ++ ++
Sbjct: 210 FSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLI 268
Query: 512 SFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGT 571
+ WL N + SWI ++ F++A+ ++ + P L T + +GT
Sbjct: 269 CVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAI----PEGLPAVITTCLALGT 324
Query: 572 GVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGK 608
A + +++ ++E+ + I DKTGT+T +
Sbjct: 325 RRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 361
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 38/201 (18%)
Query: 688 DIPPDTEEM-LTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSIL 746
D PP EEM L ++ + E D GV+ + DP + G I + + IR I+
Sbjct: 568 DTPPKREEMVLDDSSRFMEYE----TDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIM 623
Query: 747 VTGDNWGTAKSIASEVGI-------------------------------ETVIAEAKPEQ 775
+TGDN GTA +I +GI A +P
Sbjct: 624 ITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSH 683
Query: 776 KAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDE 835
K++ VE LQ+ AM GDG+ND+PAL A++G+A+G+GT +A A+++VL N
Sbjct: 684 KSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTI 743
Query: 836 ITAIDLSRKTFSRIR--INYI 854
+ A++ R ++ ++ I Y+
Sbjct: 744 VAAVEEGRAIYNNMKQFIRYL 764
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 124/277 (44%), Gaps = 30/277 (10%)
Query: 349 MLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRN 408
+LI+ ++G + E A+ AI L + PE + D + S + I +R I
Sbjct: 97 ILIANAIVGVWQERNAEN----AIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 148
Query: 409 DVIKIIPGAKVASDGYVLWGKS---YVNESMITGEAWPVAK--------------REGDT 451
D++++ G KV +D +L KS V++S++TGE+ V K ++
Sbjct: 149 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 452 VTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIIL 511
+G + L I AT G + + +I + + + K P+Q+ D + ++ ++
Sbjct: 209 FSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLI 267
Query: 512 SFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGT 571
+ WL N + SWI ++ F++A+ ++ + P L T + +GT
Sbjct: 268 CVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAI----PEGLPAVITTCLALGT 323
Query: 572 GVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGK 608
A + +++ ++E+ + I DKTGT+T +
Sbjct: 324 RRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 38/201 (18%)
Query: 688 DIPPDTEEM-LTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSIL 746
D PP EEM L ++ + E D GV+ + DP + G I + + IR I+
Sbjct: 567 DTPPKREEMVLDDSTKFMEYE----TDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIM 622
Query: 747 VTGDNWGTAKSIASEVGI-------------------------------ETVIAEAKPEQ 775
+TGDN GTA +I +GI A +P
Sbjct: 623 ITGDNKGTAIAICRRIGIFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTH 682
Query: 776 KAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDE 835
K++ VE LQ+ AM GDG+ND+PAL A++G+A+G+GT +A A+++VL N
Sbjct: 683 KSKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTI 742
Query: 836 ITAIDLSRKTFSRIR--INYI 854
+ A++ R ++ ++ I Y+
Sbjct: 743 VAAVEEGRAIYNNMKQFIRYL 763
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 127/278 (45%), Gaps = 32/278 (11%)
Query: 349 MLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRN 408
+LI+ ++G + E A+ AI L + PE + D + S + I +R I
Sbjct: 97 ILIANAIVGVWQERNAEN----AIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 148
Query: 409 DVIKIIPGAKVASDGYVLWGKS---YVNESMITGEAWPVAK--------------REGDT 451
D++++ G KV +D +L KS V++S++TGE+ V K ++
Sbjct: 149 DIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 452 VTGGTLNENGVLHIKATR-VGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVII 510
+G + + I AT VG+E + +I + + + K P+Q+ D + ++ +
Sbjct: 209 FSGTNIAAGKAIGIVATTGVGTE--IGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL 266
Query: 511 LSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVG 570
+ + WL N + SWI ++ F++A+ ++ V A P L T + +G
Sbjct: 267 ICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV----ALAVAAIPEGLPAVITTCLALG 322
Query: 571 TGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGK 608
T A + +++ ++E+ + I DKTGT+T +
Sbjct: 323 TRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
MTC+ACA IEK +KR+PG+ DA V++ + V++ P I E IE +G+
Sbjct: 15 MTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIEKLGYHVV-- 72
Query: 61 PGETIEKSTQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILS 120
T+ I+ +TC +C++ +EK I+GV NA V A E V Y+P+ S
Sbjct: 73 --------TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEAS 124
Query: 121 CNQLLKAIEDTGFE 134
+ L +A++ G++
Sbjct: 125 VSDLKEAVDKLGYK 138
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
+++ +TC +C++ +EK + + GV +A+V LATE + V YDP + + IE G+
Sbjct: 10 MQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIEKLGY 69
Query: 134 EAIPISTGEDIVSKIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKP 192
+ K ++G+ IE L + GV + ++ ++ +++ Y P
Sbjct: 70 HV--------VTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNP 120
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC+ACA IEK + ++ G+ +A V+ V + P + + EA++ +G+K L
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 141
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 147 KIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIE 205
+I + + G+ IE L+ +PGV D +++ + ++ Y PA TG + IE
Sbjct: 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIE 65
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 10/134 (7%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
MTC+ACA IEK +KR+PG+ DA V++ V++ P I E IE +G+
Sbjct: 15 MTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVV-- 72
Query: 61 PGETIEKSTQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILS 120
T+ I+ +TC +C++ +EK I+GV NA V A E V Y+P+ S
Sbjct: 73 --------TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEAS 124
Query: 121 CNQLLKAIEDTGFE 134
+ L +A++ G++
Sbjct: 125 VSDLKEAVDKLGYK 138
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
+++ +TC +C++ +EK + + GV +A+V LATE V YDP + + IE G+
Sbjct: 10 MQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69
Query: 134 EAIPISTGEDIVSKIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKP 192
+ K ++G+ IE L + GV + ++ ++ +++ Y P
Sbjct: 70 HV--------VTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNP 120
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC+ACA IEK + ++ G+ +A V+ V + P + + EA++ +G+K L
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 141
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 147 KIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIE 205
+I + + G+ IE L+ +PGV D +++ + +++ Y PA TG + IE
Sbjct: 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE 65
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 125/300 (41%), Gaps = 84/300 (28%)
Query: 630 AATEAIIEYAN----KFREDEENPMWPEA--QDFVSITGHGVKAIVRNKEIMVGNKSLML 683
A E ++E + K +E + W EA ++S+ G G E ++G L L
Sbjct: 519 GAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLG--------ERVLGFCQLYL 570
Query: 684 DNNIDIPP----DTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKS 739
D PP D E M T G++ G++S+ DP + + ++
Sbjct: 571 SEK-DYPPGYAFDVEAMNFPTSGLS-----------FAGLVSMIDPPRATVPDAVLKCRT 618
Query: 740 MQIRSILVTGDNWGTAKSIASEVGI----------------------------------- 764
IR I+VTGD+ TAK+IA+ VGI
Sbjct: 619 AGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGM 678
Query: 765 ------------------ETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAA 806
E V A P+QK VE Q G VA+ GDG+NDSPAL A
Sbjct: 679 QLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKA 738
Query: 807 DVGMAIG-AGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGIT 865
D+G+A+G AG+D A AAD++L+ N +T ++ R F ++ + + L N+ +T
Sbjct: 739 DIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELT 798
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 117/274 (42%), Gaps = 33/274 (12%)
Query: 350 LISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRND 409
LI+ +++ + K++ IA +L P+ AT++ +G+ +I++ + D
Sbjct: 146 LIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVI---RDGDKF---QINADQLVVGD 199
Query: 410 VIKIIPGAKVASDGYVLWGKSY-VNESMITGEAWPVAKREGDTVTG----------GTLN 458
++++ G +V +D +L + V+ S +TGE+ P + T T+
Sbjct: 200 LVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMC 259
Query: 459 ENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLA 518
G G + + +I L + K P+ ++FV ++ L+
Sbjct: 260 LEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAI----EIEHFVDIIAGLAILFGAT 315
Query: 519 WYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVG-ASQ 577
+++ Y +F A+ F ++++V P L LAT T + T AS+
Sbjct: 316 FFIVAMCIGY----------TFLRAMVFFMAIVVAYVPEGL-LATVTVCLSLTAKRLASK 364
Query: 578 GVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVV 611
++K +A+E+ + I DKTGT+T + V
Sbjct: 365 NCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTV 398
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 54/209 (25%)
Query: 711 SVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGI------ 764
+ D G++++ DP + + +S I+ I+VTGD+ TAK+IA VGI
Sbjct: 585 TTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNE 644
Query: 765 -----------------------------------------------ETVIAEAKPEQKA 777
E V A P+QK
Sbjct: 645 TIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKL 704
Query: 778 EKVEELQASGYTVAMVGDGINDSPALVAADVGMAIG-AGTDIAIEAADIVLMKSNLEDEI 836
VE Q G VA+ GDG+NDSPAL AD+G+A+G +G+D++ +AAD++L+ N +
Sbjct: 705 IIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIV 764
Query: 837 TAIDLSRKTFSRIRINYIWALGYNLLGIT 865
T ++ R F ++ + + L N+ IT
Sbjct: 765 TGVEEGRLIFDNLKKSIAYTLTSNIPEIT 793
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 106/262 (40%), Gaps = 35/262 (13%)
Query: 365 KGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGY 424
+ K+S + ++ P+ A L+ D E + I+ E + D++++ G ++ +D
Sbjct: 156 EAKSSRIMDSFKNMVPQQA-LVIRDGEKSTINAE-----FVVAGDLVEVKGGDRIPADLR 209
Query: 425 VLWGKSY-VNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATRV-----------GS 472
++ V+ S +TGE+ P R + + L + V G
Sbjct: 210 IISAHGCKVDNSSLTGESEP-QTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGD 268
Query: 473 ESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESW 532
+ + +I L ++ + P+ + + + L S ++ + G SW
Sbjct: 269 RTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGY------SW 322
Query: 533 IPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVG-ASQGVLIKGGQALESTH 591
+ A+ F I ++V P L LAT T + T A + L+K +A+E+
Sbjct: 323 LE--------AVIFLIGIIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLG 373
Query: 592 KVNCIVFDKTGTMTIGKPVVVN 613
+ I DKTGT+T + V +
Sbjct: 374 STSTICSDKTGTLTQNRMTVAH 395
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 54/204 (26%)
Query: 716 LTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGI----------- 764
G++S+ DP + + +S I+ I+VTGD+ TAK+IA VGI
Sbjct: 554 FVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDI 613
Query: 765 ------------------------------------------ETVIAEAKPEQKAEKVEE 782
E V A P+QK VE
Sbjct: 614 AARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEG 673
Query: 783 LQASGYTVAMVGDGINDSPALVAADVGMAIG-AGTDIAIEAADIVLMKSNLEDEITAIDL 841
Q G VA+ GDG+NDSPA AD+G+A+G AG+D++ +AAD++L+ N +T ++
Sbjct: 674 CQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEE 733
Query: 842 SRKTFSRIRINYIWALGYNLLGIT 865
R F ++ + + L N+ IT
Sbjct: 734 GRLIFDNLKKSIAYTLTSNIPEIT 757
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/278 (18%), Positives = 116/278 (41%), Gaps = 35/278 (12%)
Query: 349 MLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRN 408
+L + +++ + K+S+ + ++ P+ A ++ E+ ++ +EE +
Sbjct: 104 VLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEE------VVVG 157
Query: 409 DVIKIIPGAKVASDGYVLWGKSY-VNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKA 467
D++++ G ++ +D ++ V+ S +TGE+ P R D L +
Sbjct: 158 DLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEP-QTRSPDFTNENPLETRNIAFFST 216
Query: 468 TRV-----------GSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTW 516
V G + + +I L + + P+ ++F+ ++ ++
Sbjct: 217 NCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAA----EIEHFIHIITGVAVFLG 272
Query: 517 LAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVG-A 575
+++++ Y +W+ A+ F I ++V P L LAT T + T A
Sbjct: 273 VSFFILSLILEY--TWLE--------AVIFLIGIIVANVPEGL-LATVTVCLTLTAKRMA 321
Query: 576 SQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVN 613
+ L+K +A+E+ + I KTGT+T + V +
Sbjct: 322 RKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAH 359
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 54/204 (26%)
Query: 716 LTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGI----------- 764
G++S+ DP + + +S I+ I+VTGD+ TAK+IA VGI
Sbjct: 560 FVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDI 619
Query: 765 ------------------------------------------ETVIAEAKPEQKAEKVEE 782
E V A P+QK VE
Sbjct: 620 AARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEG 679
Query: 783 LQASGYTVAMVGDGINDSPALVAADVGMAIG-AGTDIAIEAADIVLMKSNLEDEITAIDL 841
Q G VA+ GDG+NDSPA AD+G+A+G AG+D++ +AAD++L+ N +T ++
Sbjct: 680 CQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEE 739
Query: 842 SRKTFSRIRINYIWALGYNLLGIT 865
R F ++ + + L N+ IT
Sbjct: 740 GRLIFDNLKKSIAYTLTSNIPEIT 763
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/278 (18%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 349 MLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRN 408
+L + +++ + K+S+ + ++ P+ A ++ E+ ++ +EE +
Sbjct: 110 VLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEE------VVVG 163
Query: 409 DVIKIIPGAKVASDGYVLWGK-SYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKA 467
D++++ G ++ +D ++ V+ S +TGE+ P R D L +
Sbjct: 164 DLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEP-QTRSPDFTNENPLETRNIAFFST 222
Query: 468 TRV-----------GSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTW 516
V G + + +I L + + P+ ++F+ ++ ++
Sbjct: 223 NCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAA----EIEHFIHIITGVAVFLG 278
Query: 517 LAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVG-A 575
+++++ Y +W+ A+ F I ++V P L LAT T + T A
Sbjct: 279 VSFFILSLILEY--TWLE--------AVIFLIGIIVANVPEGL-LATVTVCLTLTAKRMA 327
Query: 576 SQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVN 613
+ L+K +A+E+ + I DKTGT+T + V +
Sbjct: 328 RKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAH 365
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 34/187 (18%)
Query: 715 ELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVI------ 768
E+ G++ DP + + + K++ + ++TGD G A+ + ++G+ T I
Sbjct: 525 EILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERL 584
Query: 769 -----------------------AEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVA 805
AE P+ K VE LQ GY VAM GDG+ND+P+L
Sbjct: 585 GLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKK 644
Query: 806 ADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRI--RINYIWALGYNL-- 861
AD G+A+ +D A AADIV + L I A+ SR+ F R+ + Y AL +L
Sbjct: 645 ADTGIAVEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEI 704
Query: 862 -LGITIA 867
LG+ IA
Sbjct: 705 FLGLWIA 711
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 16/213 (7%)
Query: 398 EEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSY--VNESMITGEAWPVAKREGDTVTGG 455
+EI++ + D++++ G + +DG ++ ++ V++S +TGE+ V K +GD V
Sbjct: 189 KEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFAS 248
Query: 456 TLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFST 515
+ + G + T G + + + LV +A F + + L+I++ F+
Sbjct: 249 SAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSG---HFTEVLNGIGTILLILVIFTL 305
Query: 516 WLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGA 575
+ W ++ + S P I L+F +++ +I P L T + VG A
Sbjct: 306 LIVW-VSSFYRSNPIVQI----------LEFTLAITIIGVPVGLPAVVTTTMAVGAAYLA 354
Query: 576 SQGVLIKGGQALESTHKVNCIVFDKTGTMTIGK 608
+ +++ A+ES V + DKTGT+T K
Sbjct: 355 KKKAIVQKLSAIESLAGVEILCSDKTGTLTKNK 387
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%)
Query: 70 QVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIE 129
Q C ++IK +TC SC S +E+ Q GV + V L +AE+ YDP ++ ++ + I+
Sbjct: 4 QKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQ 63
Query: 130 DTGFEAIPISTGEDIVSKIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISIS 189
D GFEA + I L + G+ V IES L G+ + + K +
Sbjct: 64 DLGFEAAVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVK 123
Query: 190 YKPAMTGPRNFIKMIE 205
+ P + GPR+ IK+IE
Sbjct: 124 FDPEIIGPRDIIKIIE 139
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
MTC++C +IE+ +++ G+ +V ++ +A++ + P + I + I+ +GF+A ++
Sbjct: 13 MTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVM 72
Query: 61 PGETIEKSTQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILS 120
E S + I +TC SC +E G+ A V LAT +A V +DP I+
Sbjct: 73 --EDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIG 130
Query: 121 CNQLLKAIEDTGFEA 135
++K IE+ GF A
Sbjct: 131 PRDIIKIIEEIGFHA 145
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC++C +IE + R GI A V + ++A V F P + I++ IE +GF A+L
Sbjct: 89 MTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASL 147
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 30/173 (17%)
Query: 715 ELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVG----------- 763
E G+L + DP + + I ++ + ++TGD K +G
Sbjct: 478 EFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSAL 537
Query: 764 -------------IETVIAEAK------PEQKAEKVEELQASGYTVAMVGDGINDSPALV 804
+E +I +A PE K E V++LQ + V M GDG+ND+PAL
Sbjct: 538 LGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALK 597
Query: 805 AADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWAL 857
AD+G+A+ TD A A+DIVL + L I+A+ SR F R++ I+A+
Sbjct: 598 KADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 650
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 15/211 (7%)
Query: 399 EIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSY-VNESMITGEAWPVAKREGDTVTGGTL 457
E ++ ++ D++ I G + +D +L G V++S +TGE+ PV K G V G+
Sbjct: 142 EQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGST 201
Query: 458 NENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWL 517
+ G + G + + LV+S QK + + + I +
Sbjct: 202 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQV-GHFQKVLTAIGNFCICSIAIGMVIEII 260
Query: 518 AWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQ 577
Y P + + + +++ P A+ + +G+ + Q
Sbjct: 261 VMY-------------PIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQ 307
Query: 578 GVLIKGGQALESTHKVNCIVFDKTGTMTIGK 608
G + K A+E ++ + DKTGT+T+ K
Sbjct: 308 GAITKRMTAIEEMAGMDVLCSDKTGTLTLNK 338
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 24/163 (14%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGV---GFKA 57
M C +C ++IE+ I +L G+ V + N AQV + P + + AIE + FK
Sbjct: 29 MHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKV 88
Query: 58 TLVPG---------------------ETIEKSTQVCRIRIKKLTCTSCSSTVEKTFQAIQ 96
+L G ++ + I I +TC SC ++E ++
Sbjct: 89 SLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLE 148
Query: 97 GVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIPIS 139
GVQ V+LA A V Y+P ++S +L AIED GFEA +S
Sbjct: 149 GVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVS 191
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 29/173 (16%)
Query: 73 RIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTG 132
++RI + C SC +E+ + GVQ+ V+L + A+V YDP S L +AIE
Sbjct: 23 QLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALP 82
Query: 133 FEAIPIS-------TGED-------------------IVSKIHLHLDGLYTDHSVTMIES 166
+S +G D S + + G+ V IE
Sbjct: 83 PGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEG 142
Query: 167 SLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTASGHFKARIFPE 219
+ L GV I + + ++ Y PA+ P IE F+A + E
Sbjct: 143 MISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMG---FEASVVSE 192
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 145 VSKIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMI 204
V + L +DG++ V IE ++ L GV I + + Y P+ T P + I
Sbjct: 19 VVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAI 78
Query: 205 ESTASGHFKARIFPEGEG 222
E+ G+FK + EG
Sbjct: 79 EALPPGNFKVSLPDGAEG 96
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 71 VCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIED 130
V +++++ +TC SC+ST+E +QGVQ V+L +EA + Y P ++S ++ K IE
Sbjct: 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEA 69
Query: 131 TGFEA 135
GF A
Sbjct: 70 MGFPA 74
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I) Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
Length = 76
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 71 VCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIED 130
V +++++ +TC SC+ST+E +QGVQ V+L +EA + Y P ++S ++ K IE
Sbjct: 4 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEA 63
Query: 131 TGFEA 135
GF A
Sbjct: 64 MGFPA 68
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGF 55
MTC+ACA IEK +KR+PG+ DA V++ V++ P I E IE +G+
Sbjct: 15 MTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
+++ +TC +C++ +EK + + GV +A+V LATE V YDP + + IE G+
Sbjct: 10 MQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69
Query: 134 EAI 136
+
Sbjct: 70 HVV 72
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 147 KIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIE 205
+I + + G+ IE L+ +PGV D +++ + +++ Y PA TG + IE
Sbjct: 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE 65
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%)
Query: 69 TQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAI 128
TQ I I +TC SC ++E GV++ V+LA V YDP + S L AI
Sbjct: 2 TQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAI 61
Query: 129 EDTGFEA 135
ED GF+A
Sbjct: 62 EDMGFDA 68
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC++C SIE I + PG+ V + N+ V + P + ET+ AIE +GF ATL
Sbjct: 12 MTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGF 55
M C+ACA SIE+A++RL G+ +A V V R V + P V+E TI E I +G+
Sbjct: 12 MRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGY 66
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 73 RIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILS 120
++++ + C +C+S++E+ + ++GV A VT+AT V YDP+ +S
Sbjct: 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVS 53
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First Heavy
Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
I ++ +TC SC T+E+ + GV + V+L + A + YDP++ + L +AI+D GF
Sbjct: 12 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 71
Query: 134 EAI 136
+A+
Sbjct: 72 DAV 74
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC++C +IE+ I ++ G+H V + A +++ P +T+ EAI+ +GF A +
Sbjct: 17 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVI 75
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1 And
Hah1 Mediated By Cu(I)
Length = 73
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
I ++ +TC SC T+E+ + GV + V+L + A + YDP++ + L +AI+D GF
Sbjct: 8 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 67
Query: 134 EAI 136
+A+
Sbjct: 68 DAV 70
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC++C +IE+ I ++ G+H V + A +++ P +T+ EAI+ +GF A +
Sbjct: 13 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVI 71
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
I ++ +TC SC T+E+ + GV + V+L + A + YDP++ + L +AI+D GF
Sbjct: 6 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 65
Query: 134 EAI 136
+A+
Sbjct: 66 DAV 68
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC++C +IE+ I ++ G+H V + A +++ P +T+ EAI+ +GF A +
Sbjct: 11 MTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVI 69
>pdb|1YJU|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain Of Menkes Protein
pdb|1YJV|A Chain A, Solution Structure Of The Cu(i) Form Of The Sixth Soluble
Domain Of Menkes Protein
Length = 75
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 76 IKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEA 135
++ +TC SC +E + +G+ V LAT +A + YDP I+ ++ IE GFEA
Sbjct: 10 VRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEA 69
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
MTC++C IE ++ + GI V + N+A + + P + I+ IE +GF+A+LV
Sbjct: 13 MTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEASLV 72
Query: 61 PGE 63
E
Sbjct: 73 KIE 75
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 154 GLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIES 206
G+ V IESSL G+L + + +K I Y P + GPR+ I IES
Sbjct: 12 GMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIES 64
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 69 TQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAI 128
T+ I+ +TC +C++ +EK I+GV NA V A E V Y+P+ S + L +A+
Sbjct: 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAV 61
Query: 129 EDTGFE 134
+ G++
Sbjct: 62 DKLGYK 67
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC+ACA IEK + ++ G+ +A V+ V + P + + EA++ +G+K L
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 70
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 69 TQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAI 128
T+ I+ +TC +C++ +EK I+GV NA V A E V Y+P+ S + L +A+
Sbjct: 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAV 61
Query: 129 EDTGFE 134
+ G++
Sbjct: 62 DKLGYK 67
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC+ACA IEK + ++ G+ +A V+ V + P + + EA++ +G+K L
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 70
>pdb|1YJR|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
pdb|1YJT|A Chain A, Solution Structure Of The Cu(I) Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
Length = 75
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 76 IKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFE 134
++ +TC SC +E + +G+ V LAT +A + YDP I+ ++ IE GFE
Sbjct: 10 VRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFE 68
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
MTC++C IE ++ + GI V + N+A + + P + I+ IE +GF+ +LV
Sbjct: 13 MTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLV 72
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 154 GLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIES 206
G+ V IESSL G+L + + +K I Y P + GPR+ I IES
Sbjct: 12 GMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIES 64
>pdb|2KOY|A Chain A, Structure Of The E1064a Mutant Of The N-Domain Of Wilson
Disease Associated Protein
Length = 141
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 656 DFVSITGHGVKAIVRNKE-----------IMVGNKSLMLDNNIDIPPDTEEMLTETEGMA 704
DF ++ G G+ V N E +++GN+ + N + I D + +T+ E
Sbjct: 62 DFQAVPGCGIGCKVSNVEGILAAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKG 121
Query: 705 QTEILVSVDGELTGVLSISD 724
QT ILV++DG L G+++I+D
Sbjct: 122 QTAILVAIDGVLCGMIAIAD 141
>pdb|2GGP|B Chain B, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FVQ|A Chain A, Solution Structure Of The Yeast Copper Transporter Domain
Ccc2a In The Apo And Cu(I) Loaded States
Length = 72
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
+ + +TC++C++T+ +A++GV ++L T E +V YD + + + + + IED GF
Sbjct: 6 LAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEV-TADSIKEIIEDCGF 64
Query: 134 E 134
+
Sbjct: 65 D 65
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
MTCSAC +I ++ L G+ + ++ N QV Y V ++I E IE GF ++
Sbjct: 11 MTCSACTNTINTQLRALKGVTKCDISLVTNECQVT-YDNEVTADSIKEIIEDCGFDCEIL 69
>pdb|1FVS|A Chain A, Solution Structure Of The Yeast Copper Transporter Domain
Ccc2a In The Apo And Cu(I) Load States
Length = 72
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
+ + +TC++C++T+ +A++GV ++L T E +V YD + + + + + IED GF
Sbjct: 6 LAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEV-TADSIKEIIEDCGF 64
Query: 134 E 134
+
Sbjct: 65 D 65
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
MTCSAC +I ++ L G+ + ++ N QV Y V ++I E IE GF ++
Sbjct: 11 MTCSACTNTINTQLRALKGVTKCDISLVTNECQVT-YDNEVTADSIKEIIEDCGFDCEIL 69
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain
Of Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
MTC++C +IE+ ++R GI+ +V ++ +A+V + P + I E I +GF AT++
Sbjct: 12 MTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVI 71
Query: 61 PGETIE 66
E IE
Sbjct: 72 --ENIE 75
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 72 CRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDT 131
C I++ +TC SC + +E+ + +G+ + V L +AEV Y+P ++ + + I +
Sbjct: 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64
Query: 132 GFEAIPISTGE 142
GF A I E
Sbjct: 65 GFGATVIENIE 75
>pdb|3DXS|X Chain X, Crystal Structure Of A Copper Binding Domain From Hma7,
A P- Type Atpase
Length = 74
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
MTC+AC+ S+E A+ + G+ A V +L NRA V+F P V EE I E IE GF+A ++
Sbjct: 11 MTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEIL 70
Query: 61 PGE 63
E
Sbjct: 71 AEE 73
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 73 RIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTG 132
++ + +TC +CS++VE + GV A V L A+V +DP ++ + + IED G
Sbjct: 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAG 64
Query: 133 FEA 135
FEA
Sbjct: 65 FEA 67
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 68 STQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKA 127
+TQ + + +TC++C TV+K ++GV VT T +A V +D S +L KA
Sbjct: 1 ATQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKA 60
Query: 128 IEDTGF 133
D G+
Sbjct: 61 TADAGY 66
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTCSAC ++++KAI ++ G+ V +A V F + + + +A G+ +++
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSV 70
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 70 QVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHY----DPRILSCNQLL 125
Q ++++ + CTSC+S++E+ + GVQ+ V A E+A V Y P+IL+
Sbjct: 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILT----- 56
Query: 126 KAIEDTGFEA 135
A+E G+ A
Sbjct: 57 DAVERAGYHA 66
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
M C++CA SIE+AI ++PG+ V+ +A V+ Y + + +A+E G+ A ++
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALEQA-VVSYHGETTPQILTDAVERAGYHARVL 69
>pdb|2KMV|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Free Form
pdb|2KMX|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Bound Form
Length = 185
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 673 EIMVGNKSLMLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISD 724
++++GN+ M+ N + I D + +TE E +T +LV+VD EL G+++I+D
Sbjct: 133 KVLIGNREWMIRNGLVINNDVNDFMTEHERKGRTAVLVAVDDELCGLIAIAD 184
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC +CA +++A++++PG+ A+V AQ+ P + + + A+ G+G+KATL
Sbjct: 9 MTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVP-GTSPDALTAAVAGLGYKATL 66
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
++I +TC SC++ V++ + + GVQ+A V+ A++ P S + L A+ G+
Sbjct: 4 LKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGT-SPDALTAAVAGLGY 62
Query: 134 EA 135
+A
Sbjct: 63 KA 64
>pdb|2ARF|A Chain A, Solution Structure Of The Wilson Atpase N-Domain In The
Presence Of Atp
Length = 165
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 667 AIVRNKEIMVGNKSLMLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISD 724
A+ + +++GN+ + N + I D + +T+ E QT ILV++DG L G+++I+D
Sbjct: 108 AVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIAD 165
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGF 55
M C++C + IE +++RL G+ +A V V R V + P V+E TI E I +G+
Sbjct: 17 MDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGY 71
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 73 RIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILS 120
++++ + CTSC +E + + ++GV A VT+AT V YDP+ +S
Sbjct: 11 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVS 58
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGF 55
M C++C + IE +++RL G+ +A V V R V + P V+E TI E I +G+
Sbjct: 12 MDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGY 66
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 73 RIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILS 120
++++ + CTSC +E + + ++GV A VT+AT V YDP+ +S
Sbjct: 6 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVS 53
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 68 STQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKA 127
+TQ + + +TC +C TV+K ++GV V EA V +D S +L KA
Sbjct: 1 ATQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKA 60
Query: 128 IEDTGF 133
D G+
Sbjct: 61 TADAGY 66
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59
MTC+AC ++++KA+ ++ G+ V A V F + + + +A G+ +++
Sbjct: 12 MTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKATADAGYPSSV 70
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 70 QVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHY----DPRILSCNQLL 125
Q ++++ + C +C+S++E+ + GVQ+ V A E+A V Y P+IL+
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILT----- 57
Query: 126 KAIEDTGFEA 135
A+E G+ A
Sbjct: 58 DAVERAGYHA 67
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
M C+ACA SIE+AI ++PG+ V+ +A V+ Y + + +A+E G+ A ++
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQA-VVSYHGETTPQILTDAVERAGYHARVL 70
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 70 QVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHY----DPRILSCNQLL 125
Q ++++ + C +C+S++E+ + GVQ+ V A E+A V Y P+IL+
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILT----- 57
Query: 126 KAIEDTGFEA 135
A+E G+ A
Sbjct: 58 DAVERAGYHA 67
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
M C+ACA SIE+AI ++PG+ V+ +A V+ Y + + +A+E G+ A ++
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQA-VVSYHGETTPQILTDAVERAGYHARVL 70
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
++++ ++C C VE + + GV HV L + +V +D +S + AIED G+
Sbjct: 6 LQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65
Query: 134 EAIPI 138
+ I
Sbjct: 66 DVAKI 70
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A Trinuclear
Cu(I) Cluster
Length = 69
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
++++ ++C C VE + + GV HV L + +V +D +S + AIED G+
Sbjct: 6 LQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65
Query: 134 E 134
+
Sbjct: 66 D 66
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
++++ ++C C + +E + + + GV+ V LA EV D +++ ++ IED G+
Sbjct: 9 LQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGY 68
Query: 134 E 134
+
Sbjct: 69 D 69
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 37.0 bits (84), Expect = 0.057, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 78 KLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAI 136
++TC SC V K+ Q + GVQ+ V L + VH L ++ +E TG +A+
Sbjct: 26 QMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVH---TTLPSQEVQALLEGTGRQAV 81
>pdb|2VOY|J Chain J, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 118
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 660 ITGHGVKAIVRNKEIMVGNKSLMLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGV 719
I G GV A I+VGNK L D + + + E L + E A+T ++V+ +G + G+
Sbjct: 57 IAGEGVVA----DGILVGNKRLXEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGI 112
Query: 720 LSISD 724
+++SD
Sbjct: 113 IAVSD 117
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 73 RIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVH--YDPRILSCNQLLKAIED 130
+++++ +TC C V K + + GV+ V+L EA V DP+ L++A+E+
Sbjct: 3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPK-----ALVQAVEE 57
Query: 131 TGFEA 135
G++A
Sbjct: 58 EGYKA 62
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV 60
MTC+ C +++ KA+K++PG+ V + A V + + +++A+E G+KA ++
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALV---EGTADPKALVQAVEEEGYKAEVL 65
>pdb|2HXV|A Chain A, Crystal Structure Of A
Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
(Tm1828) From Thermotoga Maritima At 1.80 A Resolution
Length = 360
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 90 KTFQAIQGVQNAHVTLATEEAEVHYDPRI------LSCNQLLKAIEDTGFEAIPISTGED 143
K F+ + +NA V + TE E Y P + S +L+ + + +++ + G
Sbjct: 240 KVFRVFE--ENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYERDIDSVLVEGGSK 297
Query: 144 IVSKIHLHLDGLYTDHSVTMIESSLQALPGVL-DIDLDPSIHKISISY 190
+ S+ H D ++ +S + L G L D+ + P +++ +
Sbjct: 298 VFSEFLDHADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEF 345
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 76 IKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIE 129
I + C SC S +E T A+Q V + V+L A V Y+ ++ L KAIE
Sbjct: 9 IDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE 62
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 152 LDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTASGH 211
+DG++ V+ IES+L AL V I + + Y + P + K IE+ + G
Sbjct: 9 IDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGL 68
Query: 212 FKARIFPEG--EGR 223
++ I E EGR
Sbjct: 69 YRVSITSEVEIEGR 82
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Zn(Ii)-Form
Length = 73
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 75 RIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGF 133
++ + C +C+ VE + + GV V ATE+ V D I + Q+ A++ G+
Sbjct: 8 KVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRA--QVESALQKAGY 64
>pdb|1EZW|A Chain A, Structure Of Coenzyme F420 Dependent
Tetrahydromethanopterin Reductase From Methanopyrus
Kandleri
Length = 349
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 731 HGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTV 790
HG I K+ QI + GD +GTA + E IE P+ +K+EEL +G T
Sbjct: 264 HG-IDTEKAEQIAEAIGKGD-FGTAIGLVDEDMIEAFSIAGDPDTVVDKIEELLKAGVTQ 321
Query: 791 AMVGDGIN 798
+VG I
Sbjct: 322 VVVGSPIG 329
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 801 PALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRIN 852
P + G IGA T ++L K+N + EIT+ID+S ++ + R N
Sbjct: 37 PGAKVLEAGCGIGAQT--------VILAKNNPDAEITSIDISPESLEKAREN 80
>pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae (Apo-Form)
Length = 68
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 76 IKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEA 135
+K ++C C + +E+ I GV+ V L E+A V +D + ++ +AI + G++A
Sbjct: 6 VKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQA 65
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 779 KVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIV 826
KV E+ A G DG ND P L AA +G+A+G ++ AD V
Sbjct: 209 KVSEIMACG-------DGGNDIPMLKAAGIGVAMGNASEKVQSVADFV 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,325,743
Number of Sequences: 62578
Number of extensions: 1017805
Number of successful extensions: 3044
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2854
Number of HSP's gapped (non-prelim): 150
length of query: 922
length of database: 14,973,337
effective HSP length: 108
effective length of query: 814
effective length of database: 8,214,913
effective search space: 6686939182
effective search space used: 6686939182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)