Query 039776
Match_columns 922
No_of_seqs 534 out of 3907
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 13:05:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 100.0 4E-152 9E-157 1275.8 78.6 896 1-919 3-915 (951)
2 COG2217 ZntA Cation transport 100.0 5E-133 1E-137 1154.7 81.3 698 147-905 3-710 (713)
3 PRK10671 copA copper exporting 100.0 6E-120 1E-124 1106.0 90.9 796 71-909 4-834 (834)
4 PRK11033 zntA zinc/cadmium/mer 100.0 1E-107 2E-112 976.7 78.7 678 146-906 53-740 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 1.4E-97 3E-102 867.1 65.8 553 291-884 1-562 (562)
6 TIGR01525 ATPase-IB_hvy heavy 100.0 8.3E-90 1.8E-94 805.2 65.2 540 310-902 1-556 (556)
7 TIGR01512 ATPase-IB2_Cd heavy 100.0 3.5E-90 7.5E-95 802.7 60.4 524 310-903 1-535 (536)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 2.8E-87 6.1E-92 803.6 57.3 516 347-883 58-629 (755)
9 PRK01122 potassium-transportin 100.0 2.1E-84 4.5E-89 751.4 63.3 504 347-874 69-598 (679)
10 PRK14010 potassium-transportin 100.0 2.8E-84 6E-89 749.7 58.2 489 348-862 70-578 (673)
11 PRK10517 magnesium-transportin 100.0 4.8E-83 1E-87 775.1 58.1 540 343-906 122-752 (902)
12 TIGR01524 ATPase-IIIB_Mg magne 100.0 3.1E-82 6.7E-87 769.3 60.2 537 346-906 90-717 (867)
13 TIGR01497 kdpB K+-transporting 100.0 3.6E-81 7.8E-86 722.4 61.2 498 342-861 63-582 (675)
14 PRK15122 magnesium-transportin 100.0 1.1E-81 2.3E-86 764.8 58.8 503 342-866 110-716 (903)
15 TIGR01517 ATPase-IIB_Ca plasma 100.0 4.1E-80 8.8E-85 760.6 60.0 553 342-905 127-784 (941)
16 TIGR01522 ATPase-IIA2_Ca golgi 100.0 8.2E-80 1.8E-84 753.3 57.0 533 350-906 86-734 (884)
17 KOG0202 Ca2+ transporting ATPa 100.0 2.9E-79 6.4E-84 678.2 42.0 558 344-920 78-806 (972)
18 TIGR01106 ATPase-IIC_X-K sodiu 100.0 2.4E-76 5.1E-81 728.7 62.8 539 344-905 104-799 (997)
19 KOG0204 Calcium transporting A 100.0 1.1E-78 2.3E-83 672.4 36.0 559 340-909 179-858 (1034)
20 COG0474 MgtA Cation transport 100.0 1.5E-77 3.3E-82 729.6 43.7 534 350-906 109-756 (917)
21 TIGR01523 ATPase-IID_K-Na pota 100.0 1.1E-75 2.3E-80 719.7 59.4 537 346-905 83-866 (1053)
22 TIGR01116 ATPase-IIA1_Ca sarco 100.0 1.5E-75 3.3E-80 717.1 60.4 551 342-907 35-747 (917)
23 TIGR01494 ATPase_P-type ATPase 100.0 2.7E-75 5.8E-80 677.2 48.6 476 351-870 3-484 (499)
24 TIGR01657 P-ATPase-V P-type AT 100.0 2.7E-73 5.9E-78 706.3 52.2 537 342-907 191-914 (1054)
25 COG2216 KdpB High-affinity K+ 100.0 1E-64 2.2E-69 532.8 38.6 485 341-846 62-568 (681)
26 KOG0208 Cation transport ATPas 100.0 8.3E-64 1.8E-68 562.0 47.1 528 312-868 188-931 (1140)
27 KOG0203 Na+/K+ ATPase, alpha s 100.0 6.4E-66 1.4E-70 570.4 20.2 503 347-869 129-788 (1019)
28 TIGR01652 ATPase-Plipid phosph 100.0 1E-62 2.2E-67 613.9 47.0 545 340-904 50-885 (1057)
29 KOG0205 Plasma membrane H+-tra 100.0 1.3E-63 2.9E-68 535.3 30.5 558 337-919 91-713 (942)
30 PLN03190 aminophospholipid tra 100.0 8.8E-57 1.9E-61 553.4 52.1 539 341-900 137-988 (1178)
31 KOG0209 P-type ATPase [Inorgan 100.0 3.1E-51 6.8E-56 450.3 25.4 470 322-817 201-836 (1160)
32 KOG0210 P-type ATPase [Inorgan 100.0 7.1E-46 1.5E-50 400.8 33.5 482 341-855 129-849 (1051)
33 KOG0206 P-type ATPase [General 100.0 2.7E-43 5.8E-48 418.0 28.3 509 342-867 82-874 (1151)
34 PF00122 E1-E2_ATPase: E1-E2 A 100.0 1.3E-35 2.9E-40 310.6 19.4 223 349-589 1-230 (230)
35 PF00702 Hydrolase: haloacid d 99.9 1.3E-25 2.8E-30 232.9 12.8 200 593-807 1-215 (215)
36 COG4087 Soluble P-type ATPase 99.6 3.8E-15 8.3E-20 130.4 11.7 123 712-837 17-144 (152)
37 KOG0207 Cation transport ATPas 99.6 2E-13 4.3E-18 156.7 21.0 135 77-215 1-135 (951)
38 COG1778 Low specificity phosph 99.2 8.3E-11 1.8E-15 107.5 10.6 116 732-849 42-165 (170)
39 TIGR02137 HSK-PSP phosphoserin 99.1 2.6E-10 5.7E-15 115.5 11.6 116 725-842 68-198 (203)
40 PRK10671 copA copper exporting 99.1 3.6E-07 7.8E-12 113.2 41.1 128 1-136 12-162 (834)
41 PRK11133 serB phosphoserine ph 99.1 4.9E-10 1.1E-14 121.3 12.8 115 725-840 181-316 (322)
42 TIGR01670 YrbI-phosphatas 3-de 99.1 2.2E-09 4.8E-14 104.1 13.5 113 713-833 22-138 (154)
43 PF00403 HMA: Heavy-metal-asso 99.0 1.1E-09 2.4E-14 88.3 7.8 60 149-208 1-60 (62)
44 PF00403 HMA: Heavy-metal-asso 99.0 1.3E-09 2.8E-14 87.9 7.9 62 73-134 1-62 (62)
45 PRK10513 sugar phosphate phosp 99.0 3.1E-09 6.7E-14 114.2 13.4 132 706-840 4-265 (270)
46 TIGR02726 phenyl_P_delta pheny 99.0 3.3E-09 7.2E-14 103.5 11.1 101 732-834 41-145 (169)
47 PRK01158 phosphoglycolate phos 99.0 5E-09 1.1E-13 109.6 13.2 131 706-840 4-226 (230)
48 TIGR01487 SPP-like sucrose-pho 99.0 4.2E-09 9E-14 108.9 12.2 129 707-838 3-214 (215)
49 PRK15126 thiamin pyrimidine py 98.9 4.5E-09 9.8E-14 112.9 12.0 131 707-840 4-259 (272)
50 COG0561 Cof Predicted hydrolas 98.9 7.5E-09 1.6E-13 110.7 12.8 133 706-841 4-259 (264)
51 PRK10976 putative hydrolase; P 98.9 7.2E-09 1.6E-13 111.0 12.7 131 707-840 4-261 (266)
52 TIGR00338 serB phosphoserine p 98.9 4.8E-09 1E-13 108.9 11.0 113 725-838 85-218 (219)
53 PRK09484 3-deoxy-D-manno-octul 98.9 1.3E-08 2.8E-13 101.9 12.6 111 732-844 55-173 (183)
54 COG2608 CopZ Copper chaperone 98.9 1.1E-08 2.5E-13 84.2 8.6 66 71-136 3-68 (71)
55 TIGR01482 SPP-subfamily Sucros 98.8 2.1E-08 4.6E-13 104.5 11.7 127 711-840 4-222 (225)
56 PRK10530 pyridoxal phosphate ( 98.8 5.5E-08 1.2E-12 104.7 15.0 52 789-840 217-268 (272)
57 PF08282 Hydrolase_3: haloacid 98.8 2.2E-08 4.8E-13 106.3 10.7 117 723-839 13-254 (254)
58 PLN02887 hydrolase family prot 98.8 4.5E-08 9.7E-13 113.6 13.0 52 789-840 525-576 (580)
59 COG2608 CopZ Copper chaperone 98.8 2.3E-08 5.1E-13 82.3 7.5 65 147-214 3-67 (71)
60 COG0560 SerB Phosphoserine pho 98.7 4.7E-08 1E-12 99.6 10.8 103 724-827 76-199 (212)
61 PRK13582 thrH phosphoserine ph 98.7 5.5E-08 1.2E-12 99.8 11.3 113 725-840 68-196 (205)
62 TIGR00099 Cof-subfamily Cof su 98.7 1.2E-07 2.5E-12 101.1 11.3 50 789-838 206-255 (256)
63 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.6 2.4E-07 5.3E-12 94.7 10.6 100 725-824 80-200 (201)
64 KOG1615 Phosphoserine phosphat 98.6 9.8E-08 2.1E-12 90.6 6.2 89 725-813 88-199 (227)
65 COG0546 Gph Predicted phosphat 98.5 5E-07 1.1E-11 93.5 10.7 116 723-840 87-218 (220)
66 PLN02954 phosphoserine phospha 98.5 9.3E-07 2E-11 92.1 12.6 112 725-838 84-222 (224)
67 PRK03669 mannosyl-3-phosphogly 98.4 1.7E-06 3.7E-11 92.7 12.7 58 705-765 7-64 (271)
68 PRK00192 mannosyl-3-phosphogly 98.4 2.9E-06 6.3E-11 91.1 12.8 58 705-765 4-61 (273)
69 TIGR01454 AHBA_synth_RP 3-amin 98.3 2.4E-06 5.2E-11 87.6 10.6 113 725-839 75-203 (205)
70 TIGR03333 salvage_mtnX 2-hydro 98.3 3.3E-06 7.1E-11 87.1 11.6 90 724-813 69-182 (214)
71 COG2217 ZntA Cation transport 98.3 0.00031 6.6E-09 83.6 28.7 65 71-136 3-68 (713)
72 TIGR01486 HAD-SF-IIB-MPGP mann 98.3 4.6E-06 9.9E-11 88.7 11.5 53 788-840 195-253 (256)
73 PRK09552 mtnX 2-hydroxy-3-keto 98.3 3.8E-06 8.2E-11 87.0 9.9 87 725-812 74-185 (219)
74 PRK13222 phosphoglycolate phos 98.3 4.7E-06 1E-10 86.9 10.7 117 724-842 92-224 (226)
75 TIGR01488 HAD-SF-IB Haloacid D 98.2 2.6E-06 5.7E-11 85.0 7.8 82 725-806 73-177 (177)
76 PRK13288 pyrophosphatase PpaX; 98.2 5.5E-06 1.2E-10 85.5 10.4 113 725-839 82-210 (214)
77 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.2 5.2E-06 1.1E-10 84.9 9.9 92 723-814 85-198 (202)
78 TIGR01489 DKMTPPase-SF 2,3-dik 98.2 3.4E-06 7.4E-11 85.1 8.3 88 724-811 71-186 (188)
79 TIGR02471 sucr_syn_bact_C sucr 98.2 7.2E-06 1.6E-10 86.0 10.7 65 776-840 160-232 (236)
80 PF12710 HAD: haloacid dehalog 98.2 5.2E-06 1.1E-10 84.1 8.2 77 728-804 92-192 (192)
81 PRK06769 hypothetical protein; 98.1 1.2E-05 2.7E-10 79.6 9.2 133 704-838 3-170 (173)
82 TIGR01449 PGP_bact 2-phosphogl 98.1 1.4E-05 3E-10 82.5 9.1 111 725-837 85-211 (213)
83 PRK13225 phosphoglycolate phos 98.0 3.3E-05 7.1E-10 82.4 11.8 113 725-839 142-267 (273)
84 PRK13223 phosphoglycolate phos 98.0 2.3E-05 5E-10 83.9 10.6 115 724-840 100-230 (272)
85 TIGR01485 SPP_plant-cyano sucr 98.0 6.1E-05 1.3E-09 79.7 12.5 131 710-840 6-244 (249)
86 PRK13226 phosphoglycolate phos 98.0 3E-05 6.5E-10 80.9 10.0 113 725-839 95-224 (229)
87 PRK08238 hypothetical protein; 98.0 6.4E-05 1.4E-09 86.1 13.3 92 725-817 72-169 (479)
88 TIGR01422 phosphonatase phosph 97.9 5.6E-05 1.2E-09 80.3 10.1 90 725-814 99-204 (253)
89 PRK10187 trehalose-6-phosphate 97.9 7.1E-05 1.5E-09 79.7 10.7 130 705-840 14-241 (266)
90 cd01427 HAD_like Haloacid deha 97.9 5.9E-05 1.3E-09 71.2 9.0 86 722-807 21-133 (139)
91 PRK10826 2-deoxyglucose-6-phos 97.8 7.1E-05 1.5E-09 77.7 9.3 111 724-836 91-216 (222)
92 PLN02770 haloacid dehalogenase 97.8 0.0001 2.2E-09 77.9 10.4 108 725-834 108-230 (248)
93 PRK13478 phosphonoacetaldehyde 97.7 0.00015 3.4E-09 77.5 10.6 113 725-839 101-254 (267)
94 PRK06698 bifunctional 5'-methy 97.7 0.00012 2.6E-09 84.8 10.0 115 725-841 330-455 (459)
95 PLN03243 haloacid dehalogenase 97.7 0.00017 3.8E-09 76.3 10.3 111 725-837 109-232 (260)
96 PLN02382 probable sucrose-phos 97.7 0.00026 5.6E-09 80.1 11.8 127 711-840 15-257 (413)
97 TIGR03351 PhnX-like phosphonat 97.7 0.00021 4.5E-09 74.1 9.9 113 724-838 86-218 (220)
98 PRK12702 mannosyl-3-phosphogly 97.6 0.00052 1.1E-08 71.9 12.1 55 707-764 3-57 (302)
99 TIGR01544 HAD-SF-IE haloacid d 97.6 0.00056 1.2E-08 71.8 11.9 116 724-839 120-273 (277)
100 COG2179 Predicted hydrolase of 97.5 0.00063 1.4E-08 64.0 10.1 109 698-808 21-132 (175)
101 TIGR01662 HAD-SF-IIIA HAD-supe 97.5 0.00058 1.3E-08 64.4 10.3 103 707-809 2-126 (132)
102 TIGR01668 YqeG_hyp_ppase HAD s 97.5 0.00052 1.1E-08 67.8 10.2 107 701-809 21-131 (170)
103 PRK14502 bifunctional mannosyl 97.5 0.00049 1.1E-08 80.1 11.0 57 705-764 416-472 (694)
104 TIGR01672 AphA HAD superfamily 97.5 0.00042 9.2E-09 71.7 9.2 88 725-813 114-213 (237)
105 PLN02575 haloacid dehalogenase 97.5 0.00039 8.4E-09 76.6 9.3 110 725-836 216-338 (381)
106 PRK08942 D,D-heptose 1,7-bisph 97.5 0.00084 1.8E-08 67.2 10.8 114 725-840 29-177 (181)
107 TIGR01548 HAD-SF-IA-hyp1 haloa 97.4 0.00036 7.8E-09 70.9 7.9 84 723-806 104-197 (197)
108 TIGR02253 CTE7 HAD superfamily 97.4 0.00043 9.4E-09 71.8 8.4 85 725-809 94-190 (221)
109 TIGR02461 osmo_MPG_phos mannos 97.4 0.0011 2.4E-08 68.7 11.3 52 709-764 3-54 (225)
110 PTZ00174 phosphomannomutase; P 97.4 0.00093 2E-08 70.5 10.7 53 705-760 5-57 (247)
111 PRK11590 hypothetical protein; 97.4 0.0012 2.5E-08 68.0 11.0 91 725-815 95-204 (211)
112 PRK11009 aphA acid phosphatase 97.4 0.0008 1.7E-08 69.6 9.5 85 725-813 114-213 (237)
113 PRK11587 putative phosphatase; 97.4 0.0009 1.9E-08 69.2 9.9 109 725-835 83-203 (218)
114 PLN02779 haloacid dehalogenase 97.3 0.00068 1.5E-08 73.1 9.1 110 725-836 144-269 (286)
115 TIGR01545 YfhB_g-proteo haloac 97.3 0.0013 2.7E-08 67.4 10.2 90 725-814 94-202 (210)
116 PHA02530 pseT polynucleotide k 97.3 0.00069 1.5E-08 73.9 8.7 88 722-809 184-291 (300)
117 PRK14988 GMP/IMP nucleotidase; 97.3 0.0006 1.3E-08 70.7 7.5 85 725-809 93-188 (224)
118 PRK11033 zntA zinc/cadmium/mer 97.3 0.24 5.2E-06 60.8 31.0 66 69-136 52-117 (741)
119 TIGR01484 HAD-SF-IIB HAD-super 97.3 0.0012 2.5E-08 67.6 9.2 53 709-764 3-56 (204)
120 PRK14501 putative bifunctional 97.2 0.0025 5.3E-08 78.2 13.0 143 692-840 479-721 (726)
121 TIGR02254 YjjG/YfnB HAD superf 97.2 0.00087 1.9E-08 69.6 7.5 111 725-838 97-223 (224)
122 TIGR01428 HAD_type_II 2-haloal 97.2 0.0014 3E-08 66.7 8.7 87 725-811 92-189 (198)
123 PLN02940 riboflavin kinase 97.2 0.00098 2.1E-08 74.8 8.2 103 725-827 93-210 (382)
124 TIGR00213 GmhB_yaeD D,D-heptos 97.2 0.0019 4.2E-08 64.2 9.4 109 726-836 27-175 (176)
125 TIGR01685 MDP-1 magnesium-depe 97.1 0.0017 3.6E-08 63.8 8.4 91 722-812 42-155 (174)
126 KOG4383 Uncharacterized conser 97.1 0.003 6.5E-08 71.0 11.0 148 714-861 815-1098(1354)
127 PRK09449 dUMP phosphatase; Pro 97.1 0.0015 3.2E-08 68.0 8.3 112 725-839 95-222 (224)
128 COG4030 Uncharacterized protei 97.0 0.0025 5.4E-08 62.5 8.0 116 725-841 83-263 (315)
129 TIGR02009 PGMB-YQAB-SF beta-ph 96.9 0.0016 3.5E-08 65.3 6.3 84 724-809 87-181 (185)
130 TIGR00003 copper ion binding p 96.9 0.0044 9.5E-08 49.1 7.5 62 147-208 3-64 (68)
131 TIGR01656 Histidinol-ppas hist 96.9 0.0042 9E-08 59.8 8.5 86 725-810 27-141 (147)
132 PF13419 HAD_2: Haloacid dehal 96.8 0.0017 3.7E-08 64.1 5.8 86 724-809 76-172 (176)
133 TIGR01990 bPGM beta-phosphoglu 96.8 0.002 4.4E-08 64.6 6.3 83 725-809 87-180 (185)
134 TIGR00003 copper ion binding p 96.8 0.0067 1.4E-07 48.0 8.2 64 72-135 4-67 (68)
135 TIGR01664 DNA-3'-Pase DNA 3'-p 96.8 0.0063 1.4E-07 59.7 9.3 106 705-810 13-158 (166)
136 KOG4656 Copper chaperone for s 96.8 0.0022 4.9E-08 61.6 5.7 56 1-59 15-70 (247)
137 TIGR01261 hisB_Nterm histidino 96.8 0.0045 9.7E-08 60.3 7.8 87 725-811 29-144 (161)
138 PLN02811 hydrolase 96.8 0.0044 9.4E-08 64.2 8.3 86 724-809 77-179 (220)
139 COG4359 Uncharacterized conser 96.7 0.0032 7E-08 59.9 6.0 88 725-812 73-184 (220)
140 TIGR01509 HAD-SF-IA-v3 haloaci 96.7 0.0054 1.2E-07 61.3 8.1 84 725-809 85-179 (183)
141 PLN02580 trehalose-phosphatase 96.6 0.019 4.2E-07 63.3 12.0 59 699-758 113-173 (384)
142 KOG1603 Copper chaperone [Inor 96.6 0.0058 1.3E-07 50.7 6.1 51 1-54 13-63 (73)
143 TIGR02252 DREG-2 REG-2-like, H 96.5 0.0053 1.1E-07 62.7 7.0 84 725-809 105-200 (203)
144 KOG4656 Copper chaperone for s 96.5 0.0071 1.5E-07 58.3 6.8 61 71-135 8-68 (247)
145 TIGR01686 FkbH FkbH-like domai 96.5 0.0086 1.9E-07 65.8 8.7 107 707-813 5-129 (320)
146 TIGR01681 HAD-SF-IIIC HAD-supe 96.5 0.01 2.2E-07 55.5 7.7 81 725-805 29-126 (128)
147 TIGR00685 T6PP trehalose-phosp 96.4 0.011 2.4E-07 62.2 8.9 63 773-839 165-239 (244)
148 TIGR01549 HAD-SF-IA-v1 haloaci 96.4 0.0081 1.8E-07 58.2 7.3 82 724-807 63-154 (154)
149 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.3 0.027 5.9E-07 59.2 11.0 98 706-807 9-115 (242)
150 PF06888 Put_Phosphatase: Puta 96.3 0.011 2.4E-07 60.8 7.5 78 725-802 71-184 (234)
151 TIGR01691 enolase-ppase 2,3-di 96.3 0.017 3.6E-07 59.4 8.8 91 722-812 92-194 (220)
152 PLN02957 copper, zinc superoxi 96.2 0.016 3.5E-07 60.3 8.5 67 70-140 6-72 (238)
153 smart00577 CPDc catalytic doma 96.2 0.0051 1.1E-07 59.2 4.2 86 725-811 45-139 (148)
154 PRK05446 imidazole glycerol-ph 96.2 0.018 4E-07 63.2 8.9 89 724-812 29-146 (354)
155 PRK10444 UMP phosphatase; Prov 96.1 0.034 7.4E-07 58.4 10.5 46 719-764 11-59 (248)
156 TIGR02463 MPGP_rel mannosyl-3- 96.1 0.012 2.6E-07 61.0 6.6 59 754-812 152-220 (221)
157 smart00775 LNS2 LNS2 domain. T 96.1 0.048 1E-06 52.9 10.2 87 723-809 25-141 (157)
158 PLN02957 copper, zinc superoxi 96.0 0.02 4.3E-07 59.6 7.7 65 146-217 6-70 (238)
159 PF05116 S6PP: Sucrose-6F-phos 96.0 0.031 6.6E-07 58.9 9.2 45 774-818 164-212 (247)
160 PLN03017 trehalose-phosphatase 95.9 0.11 2.3E-06 57.0 12.9 57 702-759 108-166 (366)
161 PF09419 PGP_phosphatase: Mito 95.8 0.04 8.7E-07 53.4 8.6 106 700-807 36-157 (168)
162 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.8 0.079 1.7E-06 56.2 11.7 53 708-764 4-63 (257)
163 TIGR01533 lipo_e_P4 5'-nucleot 95.8 0.039 8.6E-07 58.1 9.2 81 723-803 116-204 (266)
164 PLN02205 alpha,alpha-trehalose 95.8 0.085 1.8E-06 65.1 13.2 69 693-761 584-653 (854)
165 PLN02919 haloacid dehalogenase 95.7 0.037 7.9E-07 70.4 10.1 108 725-834 161-284 (1057)
166 COG3769 Predicted hydrolase (H 95.7 0.058 1.3E-06 53.2 8.7 55 706-764 8-62 (274)
167 KOG1603 Copper chaperone [Inor 95.6 0.032 7E-07 46.2 6.1 53 77-132 11-63 (73)
168 TIGR02247 HAD-1A3-hyp Epoxide 95.6 0.026 5.7E-07 57.9 6.9 87 724-810 93-192 (211)
169 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.4 0.11 2.4E-06 54.8 10.9 55 707-765 3-60 (249)
170 PRK09456 ?-D-glucose-1-phospha 95.4 0.042 9.1E-07 55.8 7.4 86 725-810 84-181 (199)
171 TIGR01993 Pyr-5-nucltdase pyri 95.2 0.049 1.1E-06 54.5 7.2 83 725-810 84-181 (184)
172 TIGR01675 plant-AP plant acid 95.0 0.13 2.9E-06 52.6 9.5 77 724-800 119-209 (229)
173 PRK10563 6-phosphogluconate ph 95.0 0.047 1E-06 56.5 6.3 86 724-812 87-184 (221)
174 PRK10725 fructose-1-P/6-phosph 94.7 0.064 1.4E-06 53.8 6.4 82 726-809 89-181 (188)
175 KOG3120 Predicted haloacid deh 94.7 0.11 2.3E-06 51.6 7.2 88 725-812 84-208 (256)
176 PRK10748 flavin mononucleotide 94.4 0.086 1.9E-06 55.2 6.6 83 725-813 113-207 (238)
177 PHA02597 30.2 hypothetical pro 94.3 0.12 2.6E-06 52.3 7.3 83 725-809 74-169 (197)
178 PF13344 Hydrolase_6: Haloacid 94.0 0.075 1.6E-06 47.2 4.5 86 719-807 8-99 (101)
179 KOG3040 Predicted sugar phosph 93.7 0.25 5.4E-06 48.5 7.6 50 716-765 14-66 (262)
180 PLN02645 phosphoglycolate phos 93.4 0.17 3.8E-06 55.2 7.0 103 705-812 28-136 (311)
181 PLN02151 trehalose-phosphatase 92.8 0.99 2.1E-05 49.5 11.5 55 704-759 97-153 (354)
182 COG0637 Predicted phosphatase/ 92.5 0.42 9.2E-06 49.3 8.0 87 723-809 84-181 (221)
183 COG1011 Predicted hydrolase (H 91.7 1 2.2E-05 46.7 9.8 113 724-839 98-226 (229)
184 COG0647 NagD Predicted sugar p 91.3 0.88 1.9E-05 48.0 8.7 44 718-761 17-60 (269)
185 PLN02177 glycerol-3-phosphate 91.0 1.4 3.1E-05 50.9 10.8 107 726-836 111-241 (497)
186 TIGR01684 viral_ppase viral ph 90.2 0.65 1.4E-05 49.0 6.4 60 706-768 127-189 (301)
187 TIGR01663 PNK-3'Pase polynucle 89.6 0.92 2E-05 52.8 7.8 101 706-806 169-303 (526)
188 PF03767 Acid_phosphat_B: HAD 89.4 0.38 8.3E-06 49.8 4.0 78 725-802 115-207 (229)
189 TIGR01680 Veg_Stor_Prot vegeta 87.8 3.3 7.2E-05 43.4 9.6 78 723-800 143-235 (275)
190 TIGR02251 HIF-SF_euk Dullard-l 87.6 0.38 8.2E-06 47.0 2.5 86 724-810 41-135 (162)
191 PF12689 Acid_PPase: Acid Phos 86.8 2.1 4.6E-05 41.8 7.1 86 725-812 45-147 (169)
192 TIGR01452 PGP_euk phosphoglyco 86.8 0.97 2.1E-05 48.6 5.4 82 727-809 145-242 (279)
193 PHA03398 viral phosphatase sup 86.6 1.6 3.5E-05 46.3 6.5 59 706-767 129-190 (303)
194 TIGR01452 PGP_euk phosphoglyco 86.4 2.2 4.9E-05 45.8 7.9 98 707-811 4-108 (279)
195 PF08235 LNS2: LNS2 (Lipin/Ned 86.0 4.9 0.00011 38.6 8.9 87 723-809 25-141 (157)
196 PF13242 Hydrolase_like: HAD-h 85.3 1.1 2.3E-05 37.3 3.8 61 772-834 6-74 (75)
197 TIGR01493 HAD-SF-IA-v2 Haloaci 85.3 1 2.3E-05 44.4 4.4 75 725-806 90-175 (175)
198 TIGR02052 MerP mercuric transp 84.7 6.1 0.00013 33.5 8.5 63 72-134 25-87 (92)
199 PF02358 Trehalose_PPase: Treh 84.4 2.5 5.4E-05 44.1 6.9 54 711-764 3-59 (235)
200 TIGR02244 HAD-IG-Ncltidse HAD 84.3 4.8 0.0001 44.2 9.1 38 726-763 185-223 (343)
201 PRK14054 methionine sulfoxide 84.0 1.6 3.4E-05 42.6 4.7 50 158-207 10-78 (172)
202 PTZ00445 p36-lilke protein; Pr 82.3 5.9 0.00013 39.8 7.9 115 694-808 32-199 (219)
203 TIGR02052 MerP mercuric transp 81.5 6.6 0.00014 33.2 7.4 62 147-208 24-85 (92)
204 TIGR02463 MPGP_rel mannosyl-3- 80.4 2.9 6.2E-05 43.1 5.5 52 710-765 4-56 (221)
205 TIGR01460 HAD-SF-IIA Haloacid 80.4 15 0.00033 38.2 11.0 84 719-808 8-101 (236)
206 KOG3085 Predicted hydrolase (H 80.3 5 0.00011 41.4 7.0 96 726-822 114-222 (237)
207 PRK05528 methionine sulfoxide 79.8 3 6.5E-05 40.0 4.9 50 158-207 8-71 (156)
208 COG0241 HisB Histidinol phosph 78.4 4.7 0.0001 39.7 5.8 84 726-809 32-144 (181)
209 COG1877 OtsB Trehalose-6-phosp 78.0 15 0.00033 38.7 9.9 66 699-764 12-80 (266)
210 PRK00058 methionine sulfoxide 77.7 7.9 0.00017 39.1 7.3 50 158-207 52-120 (213)
211 KOG4383 Uncharacterized conser 77.3 16 0.00034 42.4 10.2 117 391-518 163-291 (1354)
212 PRK13014 methionine sulfoxide 76.9 3 6.4E-05 41.2 4.0 50 158-207 15-83 (186)
213 TIGR01459 HAD-SF-IIA-hyp4 HAD- 76.6 3.2 7E-05 43.5 4.6 83 727-810 140-237 (242)
214 COG3700 AphA Acid phosphatase 75.1 7.8 0.00017 37.3 6.0 86 726-812 115-210 (237)
215 COG0225 MsrA Peptide methionin 73.7 5.1 0.00011 38.7 4.5 50 158-207 13-81 (174)
216 PF00873 ACR_tran: AcrB/AcrD/A 73.3 86 0.0019 40.6 17.1 127 7-134 62-213 (1021)
217 PLN02423 phosphomannomutase 71.6 5.6 0.00012 41.7 4.9 44 770-814 182-232 (245)
218 PF05822 UMPH-1: Pyrimidine 5' 71.6 11 0.00024 39.0 6.8 115 725-839 90-241 (246)
219 TIGR00401 msrA methionine-S-su 71.5 6.9 0.00015 37.3 4.9 50 158-207 7-75 (149)
220 COG0078 ArgF Ornithine carbamo 70.5 60 0.0013 34.7 11.8 103 700-810 66-178 (310)
221 cd00371 HMA Heavy-metal-associ 68.3 28 0.00061 24.4 7.1 56 76-132 4-59 (63)
222 PF06506 PrpR_N: Propionate ca 68.0 31 0.00068 34.0 9.1 127 722-851 14-172 (176)
223 PRK14054 methionine sulfoxide 67.3 11 0.00025 36.8 5.5 47 82-128 10-75 (172)
224 PF01625 PMSR: Peptide methion 66.3 9.4 0.0002 36.7 4.7 50 158-207 7-75 (155)
225 PRK14194 bifunctional 5,10-met 66.3 30 0.00065 37.2 8.9 60 771-830 141-210 (301)
226 TIGR01689 EcbF-BcbF capsule bi 64.1 9.6 0.00021 35.3 4.1 49 708-756 4-55 (126)
227 PRK13748 putative mercuric red 64.1 21 0.00045 42.6 8.3 59 149-208 3-61 (561)
228 CHL00200 trpA tryptophan synth 63.7 66 0.0014 34.1 10.9 83 721-803 124-217 (263)
229 PF11491 DUF3213: Protein of u 62.3 10 0.00022 31.4 3.4 51 8-58 14-64 (88)
230 PRK13748 putative mercuric red 61.8 24 0.00051 42.2 8.2 64 73-137 3-66 (561)
231 PF00875 DNA_photolyase: DNA p 60.8 41 0.00089 32.7 8.3 73 731-803 56-134 (165)
232 COG2503 Predicted secreted aci 60.7 36 0.00079 34.9 7.7 78 726-803 123-209 (274)
233 PLN03063 alpha,alpha-trehalose 60.7 1.2E+02 0.0026 37.8 14.1 72 692-763 494-571 (797)
234 TIGR01456 CECR5 HAD-superfamil 60.2 19 0.00041 39.5 6.4 85 718-808 9-105 (321)
235 PRK05550 bifunctional methioni 60.1 12 0.00026 39.6 4.5 49 158-206 134-201 (283)
236 cd00371 HMA Heavy-metal-associ 58.6 46 0.00099 23.1 6.7 42 151-192 3-44 (63)
237 KOG2882 p-Nitrophenyl phosphat 57.8 41 0.00089 35.7 7.8 91 718-810 31-128 (306)
238 PRK05528 methionine sulfoxide 56.2 25 0.00054 33.8 5.6 48 82-129 8-69 (156)
239 PLN02645 phosphoglycolate phos 56.1 23 0.00051 38.6 6.2 59 779-839 239-307 (311)
240 COG1888 Uncharacterized protei 54.7 33 0.00072 29.1 5.2 50 10-59 24-78 (97)
241 PRK00058 methionine sulfoxide 52.9 24 0.00051 35.7 5.0 47 82-128 52-117 (213)
242 TIGR01517 ATPase-IIB_Ca plasma 51.3 2.3E+02 0.005 36.3 14.8 158 397-572 189-359 (941)
243 PF11491 DUF3213: Protein of u 51.3 31 0.00067 28.7 4.4 52 157-208 9-60 (88)
244 PRK13014 methionine sulfoxide 51.1 23 0.00051 35.0 4.6 47 82-128 15-80 (186)
245 COG0841 AcrB Cation/multidrug 50.7 1.2E+02 0.0025 38.9 11.8 118 86-206 64-208 (1009)
246 PF02680 DUF211: Uncharacteriz 50.3 35 0.00075 29.5 4.8 50 9-58 21-75 (95)
247 PRK02261 methylaspartate mutas 50.0 1.2E+02 0.0027 28.4 9.2 61 713-773 54-122 (137)
248 TIGR01501 MthylAspMutase methy 49.3 1.2E+02 0.0027 28.3 8.8 70 713-784 52-129 (134)
249 PRK03692 putative UDP-N-acetyl 49.0 1.1E+02 0.0023 32.1 9.4 116 731-847 95-227 (243)
250 COG4669 EscJ Type III secretor 48.9 37 0.00081 34.6 5.6 87 96-193 43-157 (246)
251 KOG3109 Haloacid dehalogenase- 48.0 60 0.0013 32.8 6.8 88 718-808 92-199 (244)
252 PLN02591 tryptophan synthase 48.0 1.9E+02 0.0042 30.3 11.1 77 724-800 114-201 (250)
253 cd04888 ACT_PheB-BS C-terminal 47.9 1.1E+02 0.0024 24.8 7.7 72 32-103 3-74 (76)
254 PF01206 TusA: Sulfurtransfera 47.8 61 0.0013 26.2 6.0 56 73-138 2-57 (70)
255 PF10173 Mit_KHE1: Mitochondri 47.8 52 0.0011 32.8 6.5 55 185-259 104-158 (187)
256 PRK14179 bifunctional 5,10-met 47.0 1E+02 0.0022 33.0 8.9 59 771-829 140-208 (284)
257 PRK14172 bifunctional 5,10-met 46.6 1.4E+02 0.0031 31.7 9.9 62 770-831 139-210 (278)
258 TIGR02250 FCP1_euk FCP1-like p 46.3 30 0.00066 33.4 4.6 43 725-768 58-101 (156)
259 PF01625 PMSR: Peptide methion 45.7 58 0.0012 31.4 6.3 48 82-129 7-73 (155)
260 PRK14169 bifunctional 5,10-met 45.7 1.3E+02 0.0028 32.1 9.4 61 771-831 138-208 (282)
261 PRK14170 bifunctional 5,10-met 45.7 1.5E+02 0.0033 31.7 9.9 60 772-831 140-209 (284)
262 KOG1635 Peptide methionine sul 44.7 37 0.0008 32.7 4.6 50 158-207 31-99 (191)
263 PRK14191 bifunctional 5,10-met 44.5 91 0.002 33.3 8.1 61 771-831 139-209 (285)
264 cd02071 MM_CoA_mut_B12_BD meth 43.8 87 0.0019 28.7 7.1 60 714-773 51-112 (122)
265 PRK14188 bifunctional 5,10-met 42.9 1.3E+02 0.0028 32.4 9.1 60 771-830 140-209 (296)
266 PF15584 Imm44: Immunity prote 42.9 11 0.00024 32.1 0.7 19 407-425 13-31 (94)
267 cd04724 Tryptophan_synthase_al 40.8 1.6E+02 0.0036 30.7 9.4 77 724-800 112-199 (242)
268 TIGR00262 trpA tryptophan synt 40.8 2.5E+02 0.0054 29.6 10.8 79 722-800 121-210 (256)
269 PLN02423 phosphomannomutase 40.7 59 0.0013 34.0 6.1 46 707-756 9-54 (245)
270 PRK14189 bifunctional 5,10-met 39.8 1.5E+02 0.0033 31.7 8.9 46 786-831 157-210 (285)
271 PRK14175 bifunctional 5,10-met 39.6 1.2E+02 0.0027 32.4 8.3 61 771-831 140-210 (286)
272 PRK14018 trifunctional thiored 39.0 1.5E+02 0.0032 34.7 9.4 50 158-207 205-272 (521)
273 TIGR01106 ATPase-IIC_X-K sodiu 38.7 5.9E+02 0.013 32.9 15.6 198 350-569 113-324 (997)
274 cd00860 ThrRS_anticodon ThrRS 38.5 1.2E+02 0.0025 25.7 6.7 47 719-765 6-53 (91)
275 COG4996 Predicted phosphatase 38.3 63 0.0014 29.7 4.8 72 725-797 41-126 (164)
276 PRK14166 bifunctional 5,10-met 37.8 2.2E+02 0.0047 30.5 9.6 61 771-831 139-209 (282)
277 COG0225 MsrA Peptide methionin 37.7 64 0.0014 31.4 5.1 47 82-128 13-78 (174)
278 PRK15424 propionate catabolism 37.1 3.6E+02 0.0077 31.9 12.3 69 729-798 95-165 (538)
279 cd00210 PTS_IIA_glc PTS_IIA, P 36.7 62 0.0013 29.8 4.7 55 406-460 24-100 (124)
280 PRK14167 bifunctional 5,10-met 36.2 2.2E+02 0.0048 30.7 9.4 59 771-829 139-211 (297)
281 PRK10555 aminoglycoside/multid 36.1 2.3E+02 0.0051 36.6 11.6 120 86-206 63-209 (1037)
282 COG2177 FtsX Cell division pro 35.9 5.9E+02 0.013 27.5 24.2 23 81-103 70-92 (297)
283 PF12710 HAD: haloacid dehalog 35.8 18 0.00038 36.0 1.2 13 596-608 1-13 (192)
284 TIGR00640 acid_CoA_mut_C methy 35.6 1.6E+02 0.0036 27.4 7.5 70 713-782 53-125 (132)
285 cd04728 ThiG Thiazole synthase 35.4 5.4E+02 0.012 26.8 12.2 76 723-800 102-187 (248)
286 PRK13125 trpA tryptophan synth 35.4 2.5E+02 0.0054 29.3 9.8 86 728-813 116-214 (244)
287 PRK14176 bifunctional 5,10-met 35.2 1.2E+02 0.0026 32.5 7.2 59 770-828 145-213 (287)
288 PRK14186 bifunctional 5,10-met 35.0 2.3E+02 0.005 30.5 9.4 60 771-830 140-209 (297)
289 PF03120 DNA_ligase_OB: NAD-de 34.7 21 0.00047 30.1 1.3 23 399-421 44-67 (82)
290 PRK11018 hypothetical protein; 34.1 1.8E+02 0.0039 24.3 6.8 56 72-137 9-64 (78)
291 COG2092 EFB1 Translation elong 34.0 1.8E+02 0.004 24.8 6.6 73 32-104 8-83 (88)
292 PF00763 THF_DHG_CYH: Tetrahyd 33.8 97 0.0021 28.2 5.6 65 723-787 9-86 (117)
293 PRK14184 bifunctional 5,10-met 33.7 2.2E+02 0.0047 30.5 8.9 60 771-830 139-212 (286)
294 COG4669 EscJ Type III secretor 33.5 46 0.00099 34.0 3.6 93 2-104 16-130 (246)
295 COG1832 Predicted CoA-binding 33.4 2.3E+02 0.005 26.6 7.7 88 715-804 17-114 (140)
296 cd00532 MGS-like MGS-like doma 33.4 1.9E+02 0.0041 25.9 7.4 75 719-798 3-80 (112)
297 PRK05550 bifunctional methioni 33.3 73 0.0016 33.9 5.2 47 82-128 134-199 (283)
298 PF00389 2-Hacid_dh: D-isomer 33.0 3.9E+02 0.0085 24.6 13.5 87 721-814 2-90 (133)
299 PF13380 CoA_binding_2: CoA bi 32.9 58 0.0013 29.6 3.9 42 726-767 64-106 (116)
300 PRK13111 trpA tryptophan synth 32.8 6.1E+02 0.013 26.7 16.4 78 724-801 125-213 (258)
301 cd02072 Glm_B12_BD B12 binding 32.5 1.8E+02 0.0038 27.1 7.0 61 713-773 50-118 (128)
302 PRK14190 bifunctional 5,10-met 32.4 2.4E+02 0.0052 30.2 9.0 61 771-831 140-210 (284)
303 KOG3128 Uncharacterized conser 32.3 2.7E+02 0.0058 29.0 8.7 113 726-838 139-289 (298)
304 PRK14174 bifunctional 5,10-met 32.3 2.4E+02 0.0051 30.4 9.0 60 771-830 141-214 (295)
305 TIGR01303 IMP_DH_rel_1 IMP deh 32.2 3E+02 0.0065 32.0 10.5 123 693-817 165-300 (475)
306 KOG2914 Predicted haloacid-hal 32.2 2.1E+02 0.0046 29.4 8.3 103 725-827 92-212 (222)
307 cd01994 Alpha_ANH_like_IV This 32.1 2.5E+02 0.0055 28.1 8.8 71 730-800 12-101 (194)
308 TIGR02329 propionate_PrpR prop 31.9 5.8E+02 0.013 30.1 12.9 102 729-848 85-188 (526)
309 COG4229 Predicted enolase-phos 31.7 1.4E+02 0.003 29.3 6.2 86 722-807 100-197 (229)
310 TIGR00401 msrA methionine-S-su 31.5 1.1E+02 0.0025 29.1 5.8 47 82-128 7-72 (149)
311 PRK04302 triosephosphate isome 31.3 3.9E+02 0.0085 27.4 10.3 87 726-814 99-203 (223)
312 TIGR02765 crypto_DASH cryptoch 30.0 1.9E+02 0.004 33.2 8.5 62 728-789 61-127 (429)
313 KOG1250 Threonine/serine dehyd 30.0 1.8E+02 0.004 32.3 7.5 92 704-803 79-176 (457)
314 PRK09577 multidrug efflux prot 30.0 1.3E+03 0.029 29.8 22.7 125 8-133 63-211 (1032)
315 TIGR03679 arCOG00187 arCOG0018 29.9 3.2E+02 0.0069 28.0 9.3 69 731-799 11-98 (218)
316 PRK14193 bifunctional 5,10-met 29.5 3.4E+02 0.0074 29.0 9.5 60 771-830 140-211 (284)
317 COG2177 FtsX Cell division pro 29.2 2.1E+02 0.0047 30.8 8.1 80 4-102 71-150 (297)
318 cd04726 KGPDC_HPS 3-Keto-L-gul 29.2 5.2E+02 0.011 25.7 10.8 85 728-813 90-186 (202)
319 PRK14185 bifunctional 5,10-met 29.0 3.4E+02 0.0074 29.2 9.4 60 771-830 139-212 (293)
320 PF04273 DUF442: Putative phos 28.9 2.8E+02 0.0061 24.9 7.6 67 731-797 17-97 (110)
321 cd06279 PBP1_LacI_like_3 Ligan 28.3 3.4E+02 0.0073 28.6 9.8 38 732-769 47-85 (283)
322 PLN03064 alpha,alpha-trehalose 27.8 1.5E+02 0.0032 37.5 7.3 73 692-764 578-662 (934)
323 PRK14010 potassium-transportin 27.8 9.2E+02 0.02 29.4 13.9 66 348-427 66-132 (673)
324 cd03420 SirA_RHOD_Pry_redox Si 27.6 2E+02 0.0044 23.2 5.9 54 74-137 2-55 (69)
325 TIGR03556 photolyase_8HDF deox 27.3 2.3E+02 0.005 32.9 8.6 63 728-790 55-122 (471)
326 PLN02897 tetrahydrofolate dehy 27.3 3.7E+02 0.0081 29.6 9.4 46 786-831 213-266 (345)
327 PRK14183 bifunctional 5,10-met 27.1 3.9E+02 0.0084 28.6 9.4 62 771-832 139-210 (281)
328 PRK14171 bifunctional 5,10-met 26.7 3.8E+02 0.0082 28.8 9.2 60 771-830 141-210 (288)
329 PF03129 HGTP_anticodon: Antic 26.6 1.9E+02 0.0042 24.6 6.1 48 718-765 3-54 (94)
330 PRK10503 multidrug efflux syst 26.5 5.3E+02 0.012 33.5 12.4 122 85-206 73-219 (1040)
331 TIGR00489 aEF-1_beta translati 26.4 2.8E+02 0.0061 23.9 6.6 65 38-104 14-83 (88)
332 PF00873 ACR_tran: AcrB/AcrD/A 26.3 1.6E+02 0.0036 38.0 7.9 121 86-207 63-210 (1021)
333 COG3981 Predicted acetyltransf 25.9 1.6E+02 0.0035 28.7 5.6 57 708-764 72-155 (174)
334 cd05017 SIS_PGI_PMI_1 The memb 25.8 1.6E+02 0.0036 26.6 5.7 40 727-768 56-95 (119)
335 PTZ00445 p36-lilke protein; Pr 25.8 1.5E+02 0.0033 30.1 5.7 70 725-795 26-99 (219)
336 TIGR00696 wecB_tagA_cpsF bacte 25.6 4.1E+02 0.0088 26.2 8.8 118 730-848 37-171 (177)
337 PRK14178 bifunctional 5,10-met 25.6 3.3E+02 0.0072 29.0 8.6 60 771-830 134-203 (279)
338 COG0415 PhrB Deoxyribodipyrimi 25.6 2.6E+02 0.0056 32.2 8.2 64 729-792 56-124 (461)
339 PF01206 TusA: Sulfurtransfera 25.1 1.7E+02 0.0036 23.6 5.1 50 149-208 2-51 (70)
340 PRK14177 bifunctional 5,10-met 25.1 5.1E+02 0.011 27.7 9.8 60 771-830 141-210 (284)
341 TIGR03028 EpsE polysaccharide 24.9 97 0.0021 32.3 4.5 35 380-415 201-236 (239)
342 PF04312 DUF460: Protein of un 24.9 5.5E+02 0.012 24.1 8.6 71 711-784 49-123 (138)
343 PF07302 AroM: AroM protein; 24.9 3.3E+02 0.0071 28.0 8.0 99 723-829 69-185 (221)
344 PRK15127 multidrug efflux syst 24.6 4.1E+02 0.009 34.5 10.9 120 86-206 63-209 (1049)
345 TIGR01460 HAD-SF-IIA Haloacid 24.5 6.8E+02 0.015 25.8 10.8 31 779-809 197-229 (236)
346 PLN02389 biotin synthase 24.4 4.6E+02 0.01 29.4 10.0 73 726-798 151-240 (379)
347 PRK15108 biotin synthase; Prov 24.1 5.5E+02 0.012 28.4 10.5 72 728-799 111-199 (345)
348 PF00358 PTS_EIIA_1: phosphoen 24.1 1.1E+02 0.0024 28.6 4.1 55 406-460 28-104 (132)
349 PRK11840 bifunctional sulfur c 24.0 1.5E+02 0.0033 32.2 5.6 72 725-798 178-259 (326)
350 cd00859 HisRS_anticodon HisRS 23.8 2.6E+02 0.0057 23.1 6.4 46 719-764 6-52 (91)
351 TIGR00216 ispH_lytB (E)-4-hydr 23.8 8E+02 0.017 26.3 11.0 100 717-816 156-265 (280)
352 COG1171 IlvA Threonine dehydra 23.5 1.6E+02 0.0034 32.4 5.8 86 712-805 47-138 (347)
353 PRK04435 hypothetical protein; 23.2 3E+02 0.0064 26.2 7.1 79 25-103 63-143 (147)
354 PRK10929 putative mechanosensi 23.2 1.5E+03 0.031 29.6 14.9 15 352-366 716-730 (1109)
355 PRK01713 ornithine carbamoyltr 23.2 3.8E+02 0.0083 29.5 8.9 106 700-813 68-187 (334)
356 TIGR00288 conserved hypothetic 23.1 7E+02 0.015 24.2 11.6 93 692-796 42-138 (160)
357 PRK09577 multidrug efflux prot 23.1 5.5E+02 0.012 33.3 11.6 119 86-207 63-209 (1032)
358 cd01917 ACS_2 Acetyl-CoA synth 23.0 2.9E+02 0.0062 29.3 7.2 111 732-843 162-283 (287)
359 TIGR00915 2A0602 The (Largely 23.0 4.2E+02 0.0091 34.4 10.6 122 85-206 62-209 (1044)
360 cd04879 ACT_3PGDH-like ACT_3PG 23.0 3.3E+02 0.0071 21.1 6.5 66 33-102 3-69 (71)
361 TIGR02109 PQQ_syn_pqqE coenzym 23.0 5.4E+02 0.012 28.5 10.3 48 723-771 63-113 (358)
362 PRK00208 thiG thiazole synthas 22.9 8.9E+02 0.019 25.3 12.4 75 723-799 102-186 (250)
363 PRK08508 biotin synthase; Prov 22.7 6.9E+02 0.015 26.6 10.6 77 723-799 70-165 (279)
364 PRK07807 inosine 5-monophospha 22.5 4.6E+02 0.01 30.5 9.8 121 693-815 167-300 (479)
365 cd03422 YedF YedF is a bacteri 22.2 2.5E+02 0.0055 22.6 5.5 54 74-137 2-55 (69)
366 PRK09479 glpX fructose 1,6-bis 22.1 3.8E+02 0.0082 28.9 8.0 70 752-823 142-221 (319)
367 cd03423 SirA SirA (also known 22.0 3.2E+02 0.007 22.0 6.1 54 74-137 2-55 (69)
368 cd03421 SirA_like_N SirA_like_ 22.0 2.5E+02 0.0054 22.4 5.4 52 74-136 2-53 (67)
369 COG0731 Fe-S oxidoreductases [ 21.9 4.1E+02 0.0088 28.6 8.3 76 723-801 90-189 (296)
370 PLN02616 tetrahydrofolate dehy 21.9 5.3E+02 0.012 28.6 9.4 45 786-830 230-282 (364)
371 TIGR00739 yajC preprotein tran 21.7 5.1E+02 0.011 22.0 7.7 10 366-375 25-34 (84)
372 COG0841 AcrB Cation/multidrug 21.6 1.8E+03 0.039 28.5 22.4 127 7-134 63-212 (1009)
373 PRK09435 membrane ATPase/prote 21.5 1.1E+03 0.024 25.9 12.0 114 715-829 57-202 (332)
374 KOG1504 Ornithine carbamoyltra 21.4 95 0.0021 32.0 3.3 38 776-813 177-218 (346)
375 PF03808 Glyco_tran_WecB: Glyc 21.3 3.6E+02 0.0078 26.4 7.5 116 730-846 37-170 (172)
376 PRK13670 hypothetical protein; 21.3 6.7E+02 0.014 28.3 10.4 91 715-805 2-112 (388)
377 PRK11152 ilvM acetolactate syn 21.0 4.9E+02 0.011 21.7 7.2 70 31-103 5-75 (76)
378 PRK00299 sulfur transfer prote 21.0 4.8E+02 0.01 21.9 7.1 56 72-137 10-65 (81)
379 cd02067 B12-binding B12 bindin 21.0 3.8E+02 0.0081 24.1 7.2 56 715-770 52-109 (119)
380 PRK10792 bifunctional 5,10-met 20.9 5.1E+02 0.011 27.7 8.9 60 771-830 141-210 (285)
381 PF00072 Response_reg: Respons 20.9 5E+02 0.011 22.3 7.9 44 728-771 56-101 (112)
382 PRK05301 pyrroloquinoline quin 20.7 7.2E+02 0.016 27.8 10.8 69 693-771 51-122 (378)
383 TIGR01524 ATPase-IIIB_Mg magne 20.4 1E+03 0.022 30.1 13.0 105 348-457 96-221 (867)
384 PHA02669 hypothetical protein; 20.3 2.4E+02 0.0053 26.7 5.5 48 310-377 1-49 (210)
385 PRK15122 magnesium-transportin 20.3 2.2E+02 0.0049 36.1 7.2 186 353-569 123-349 (903)
386 COG1188 Ribosome-associated he 20.1 3.1E+02 0.0067 24.2 5.7 21 399-419 43-63 (100)
387 PRK00856 pyrB aspartate carbam 20.0 5.2E+02 0.011 28.1 9.0 124 699-829 66-220 (305)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-152 Score=1275.83 Aligned_cols=896 Identities=50% Similarity=0.782 Sum_probs=807.5
Q ss_pred CCchhHHHHHHHHhhcCCCeeEEEEEecCCeEEEEEcCCCCCHHHHHHHHHccCccccccCCccccccceEEEEEEcCCC
Q 039776 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLVPGETIEKSTQVCRIRIKKLT 80 (922)
Q Consensus 1 m~C~~C~~~i~~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~gy~~~~~~~~~~~~~~~~~~~~i~gm~ 80 (922)
|+|..|.+.+++++++.+|++.+.+++.++++++.|| ...+.+.+++++++.||++.....+.... .+..+++.||+
T Consensus 3 mtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~-~~~~~~~i~~~ied~gf~~~~~~~~~~~~--~~~~l~v~Gmt 79 (951)
T KOG0207|consen 3 MTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD-NIVSPESIKETIEDMGFEASLLSDSEITA--SKCYLSVNGMT 79 (951)
T ss_pred ccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe-eccCHHHHHHHhhcccceeeecccCcccc--ceeEEEecCce
Confidence 8999999999999999999999999999999999999 88999999999999999998765554332 26789999999
Q ss_pred CCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCcccccccccccc-cceeeeecCCCchh
Q 039776 81 CTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIPISTGEDIV-SKIHLHLDGLYTDH 159 (922)
Q Consensus 81 C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~~~~~~~~-~~~~~~i~gm~c~~ 159 (922)
|++|...+|+.+++.+|+.++.+.+..+++++.|||...+.+.+.+.+++.||++...+..+... ..+.|.+.||.|.+
T Consensus 80 C~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~~~~~i~L~v~g~~c~s 159 (951)
T KOG0207|consen 80 CASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGNSNQKIYLDVLGMTCAS 159 (951)
T ss_pred eHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCCCCCcEEEEeecccccc
Confidence 99999999999999999999999999999999999999999999999999999987655443322 57999999999999
Q ss_pred hHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhCCCCcccccCCCCcchh---hhHHHHHHHHHH
Q 039776 160 SVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTASGHFKARIFPEGEGRE---AQKQAEIKKYYR 236 (922)
Q Consensus 160 c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ 236 (922)
|+..+|+.+.+++||.+.+++..++++.|.|||+.++++++.+.++..| |.+...+..+... -+...+.+.+++
T Consensus 160 ~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~---~~~~~~~~~~~~~~~~l~~~~ei~~w~~ 236 (951)
T KOG0207|consen 160 CVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETG---FEASVRPYGDTTFKNSLKHKEEIRKWKR 236 (951)
T ss_pred hhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhc---ccceeeeccccchhhhhhhhhHHHhcch
Confidence 9999999999999999999999999999999999999999999999998 6655433211111 112334556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhhhhHHHHHHHHHHHhhhhhccHHHHHHHHHHHHcCCCCchhHHHH
Q 039776 237 SFLWSLAFTIPVFLTSMVFMYIPGIKNVLDTKIVNMLTIGEIIRWVLSTPVQFIVGRRFYTGSYKALRIGSPNMDVLIAL 316 (922)
Q Consensus 237 ~l~~~~~la~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~~~~~~~a~~~l~~~~~~~~~L~~l 316 (922)
.|.+...+++|+++..+++++..+...... ++...+....++.++|++|++|..||+||..||++|+++..|||+|+++
T Consensus 237 ~fl~s~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~vqf~~G~~fy~~A~ksL~~g~~nMdvLv~L 315 (951)
T KOG0207|consen 237 PFLISLGFSLPVSFAMIICPPLAWILALLV-PFLPGLSYGNSLSFVLATPVQFVGGRPFYLAAYKSLKRGSANMDVLVVL 315 (951)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhhhc-cccccchhhhHHHhhhheeeEEecceeeHHHHHHHHhcCCCCceeehhh
Confidence 666777777776665544433222111111 2233345567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCccCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcce
Q 039776 317 GTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVIS 396 (922)
Q Consensus 317 ~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~ 396 (922)
+++++|+||.+.++..... .. +..|||++.|++.|+.+|+|+|.++++|+.+.+.+|.++.|.++.++. +|+.
T Consensus 316 ~t~aay~~S~~~~~~~~~~-~~-~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~---~g~~-- 388 (951)
T KOG0207|consen 316 GTTAAYFYSIFSLLAAVVF-DS-PPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATIIE---DGSE-- 388 (951)
T ss_pred HHHHHHHHHHHHHHHHHHc-cC-cchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEee---cCCc--
Confidence 9999999999998877655 22 788999999999999999999999999999999999999999999987 5532
Q ss_pred eEEecCCCcCCCCEEEEcCCCeeeceEEEEecceeeecccccCCCcccccCCCCeeecCcccccceEEEEEEEecCccHH
Q 039776 397 EEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATRVGSESAL 476 (922)
Q Consensus 397 ~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~~~vdes~lTGEs~pv~k~~g~~v~~Gs~~~~g~~~~~v~~~g~~t~~ 476 (922)
+++|+.+.|++||+|.|.||++||+||+|++|+++||||++|||+.||.|++|++|.+||+|.+|.+.++++++|.||.+
T Consensus 389 e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV~Kk~gs~ViaGsiN~nG~l~VkaT~~g~dttl 468 (951)
T KOG0207|consen 389 EKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPVPKKKGSTVIAGSINLNGTLLVKATKVGGDTTL 468 (951)
T ss_pred ceEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCceecccCCCCeeeeeeecCCceEEEEEEeccccchH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhh-cCCCCCcccCCccchHHHHHHHHhheeeeec
Q 039776 477 AQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGN-FHSYPESWIPSSMDSFELALQFGISVMVIAC 555 (922)
Q Consensus 477 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~ 555 (922)
++|.+++++++..|+|+|+++|+++.||+|.++++++++|++|++.+. ...++..|. ..+..+++.++++++++|
T Consensus 469 a~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~----~~~~~a~~~aisVlviAC 544 (951)
T KOG0207|consen 469 AQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFF----DAFSHAFQLAISVLVIAC 544 (951)
T ss_pred HHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHccccccCcchhh----HHHHHHHHhhheEEEEEC
Confidence 999999999999999999999999999999999999999999998876 223333333 578899999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccc-cCHHHHHHHHHHHH-
Q 039776 556 PCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKN-MVLRDFYELVAATE- 633 (922)
Q Consensus 556 P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~-~~~~~~~~~~~~~e- 633 (922)
||+|++|+|++++.+...++++|+++|+++.+|.+.++++++||||||||+|++.|.++..+.+ .+..+++.++++.|
T Consensus 545 PCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~a~Es 624 (951)
T KOG0207|consen 545 PCALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVAAMES 624 (951)
T ss_pred chhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999998876 78889999999988
Q ss_pred --------HHHHHHHhcccccCCCCCcCccceeeeecCc--EEEEEcCeEEEEechhhhhhCCCCCCcchHHHHHHHhcc
Q 039776 634 --------AIIEYANKFREDEENPMWPEAQDFVSITGHG--VKAIVRNKEIMVGNKSLMLDNNIDIPPDTEEMLTETEGM 703 (922)
Q Consensus 634 --------ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~g--i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (922)
|+++|+++... ........+|++.+|+| +...++++++.+||++|+..++...+++.+..+++.+..
T Consensus 625 ~SeHPig~AIv~yak~~~~---~~~~~~~~~~~~~pg~g~~~~~~~~~~~i~iGN~~~~~r~~~~~~~~i~~~~~~~e~~ 701 (951)
T KOG0207|consen 625 GSEHPIGKAIVDYAKEKLV---EPNPEGVLSFEYFPGEGIYVTVTVDGNEVLIGNKEWMSRNGCSIPDDILDALTESERK 701 (951)
T ss_pred CCcCchHHHHHHHHHhccc---ccCccccceeecccCCCcccceEEeeeEEeechHHHHHhcCCCCchhHHHhhhhHhhc
Confidence 99999998652 22334556888999999 778899999999999999999999999888888888999
Q ss_pred CceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHH
Q 039776 704 AQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEEL 783 (922)
Q Consensus 704 ~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l 783 (922)
|++..++++|+++.|++.++|++|||+..++..||++|++++|+||||..+|+++|+++|++.+|+++.|+||.++|+.+
T Consensus 702 g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~~V~aev~P~~K~~~Ik~l 781 (951)
T KOG0207|consen 702 GQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGIDNVYAEVLPEQKAEKIKEI 781 (951)
T ss_pred CceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcceEEeccCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039776 784 QASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLG 863 (922)
Q Consensus 784 ~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~ 863 (922)
|++++.|+|||||+||+|||.+|||||+||.|++.|.++||+|++++++.+++.+++++|++.++||+|+.|++.||+++
T Consensus 782 q~~~~~VaMVGDGINDaPALA~AdVGIaig~gs~vAieaADIVLmrn~L~~v~~ai~LSrkt~~rIk~N~~~A~~yn~~~ 861 (951)
T KOG0207|consen 782 QKNGGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEAADIVLMRNDLRDVPFAIDLSRKTVKRIKLNFVWALIYNLVG 861 (951)
T ss_pred HhcCCcEEEEeCCCCccHHHHhhccceeeccccHHHHhhCCEEEEccchhhhHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCHHHHHHHhhcchhhhhhhhhccccCCCCccccccccccc
Q 039776 864 ITIAAGAIFPTTRFRLPPWIAGAAMATSSVSVVCSSLLLKNYKKPKRLNNLEIHEI 919 (922)
Q Consensus 864 i~~a~~~~~~~~g~~l~p~~a~~~~~~ss~~v~~~sl~l~~~~~~~~~~~~~~~~~ 919 (922)
||+|+|+|.|+. +.|+||+|.++|.+||+.|++|||+|++||+|.. ++++.++.
T Consensus 862 IpIAagvF~P~~-~~L~Pw~A~lama~SSvsVv~sSllLk~~k~p~~-~~~~~~e~ 915 (951)
T KOG0207|consen 862 IPIAAGVFAPFG-IVLPPWMASLAMAASSVSVVLSSLLLKRYKKPTI-NKLYRYEA 915 (951)
T ss_pred hhhheecccCCc-cccCchHHHHHHHhhhHHHhhhHHHHhhcccccc-ccceeccc
Confidence 999999999985 8899999999999999999999999999999875 55554443
No 2
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-133 Score=1154.71 Aligned_cols=698 Identities=44% Similarity=0.711 Sum_probs=631.2
Q ss_pred ceeeeecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCC-hhhHHHHHHhhCCCCcccccCCCCcchhh
Q 039776 147 KIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTG-PRNFIKMIESTASGHFKARIFPEGEGREA 225 (922)
Q Consensus 147 ~~~~~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~-~~~i~~~i~~~g~~~~~a~~~~~~~~~~~ 225 (922)
+..+.++||+|++|++++| .|.++|||.+++||++++++.+.|++...+ ++++.+.+++.| |.+..... .....
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~g---y~~~~~~~-~~~~~ 77 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAG---YSARLTAA-LADPA 77 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcC---cccccccc-ccchh
Confidence 5789999999999999999 999999999999999999999999987766 799999999999 66543111 00000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhhhhHHHHHHHHHHHhhhhhccHHHHHHHHHHHHc
Q 039776 226 QKQAEIKKYYRSFLWSLAFTIPVFLTSMVFMYIPGIKNVLDTKIVNMLTIGEIIRWVLSTPVQFIVGRRFYTGSYKALRI 305 (922)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~la~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~~~~~~~a~~~l~~ 305 (922)
..+ .... +.+.++++++..+.++.+++.+...... ....|+.+++++|++++.|||||+.+|+.+++
T Consensus 78 ~~~--~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~ 144 (713)
T COG2217 78 EAE--ARLL-RELLRRLIIAGLLTLPLLLLSLGLLLGA----------FLLPWVSFLLATPVLFYGGWPFYRGAWRALRR 144 (713)
T ss_pred hhh--hhhh-hhHHHHHHHHHHHHHHHHHHHHHhhcch----------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 101 0001 3345555555555555554433221111 12357788999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhCCCccCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEE
Q 039776 306 GSPNMDVLIALGTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATL 385 (922)
Q Consensus 306 ~~~~~~~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v 385 (922)
+.+|||+|+++++.+||+||.+.++.. .||+.++++++++++|+++|.+++.|+++.++.|.++.|+++++
T Consensus 145 ~~~~md~Lv~la~~~A~~~s~~~~~~~---------~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~ 215 (713)
T COG2217 145 GRLNMDTLVALATIGAYAYSLYATLFP---------VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATV 215 (713)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 999999999999999999999988753 79999999999999999999999999999999999999999998
Q ss_pred EeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEecceeeecccccCCCcccccCCCCeeecCcccccceEEE
Q 039776 386 LTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHI 465 (922)
Q Consensus 386 ~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~~~vdes~lTGEs~pv~k~~g~~v~~Gs~~~~g~~~~ 465 (922)
++. ||+ +++|++++|++||+|+|+|||+||+||+|++|++.||||+|||||.|+.|++||.|++||+|.+|.+++
T Consensus 216 ~~~--~~~---~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~PV~k~~Gd~V~aGtiN~~G~l~i 290 (713)
T COG2217 216 VRG--DGE---EEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLPVEKKPGDEVFAGTVNLDGSLTI 290 (713)
T ss_pred Eec--CCc---EEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCCEecCCCCEEeeeEEECCccEEE
Confidence 873 554 689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHH
Q 039776 466 KATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQ 545 (922)
Q Consensus 466 ~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (922)
+|+++|.||++++|++++++++.+|+|.|+++||++.+|+|.++++++++|++|++.+. .+|..++.
T Consensus 291 ~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~-------------~~~~~a~~ 357 (713)
T COG2217 291 RVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG-------------GDWETALY 357 (713)
T ss_pred EEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC-------------CcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877652 15778999
Q ss_pred HHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccCHHHH
Q 039776 546 FGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDF 625 (922)
Q Consensus 546 ~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~ 625 (922)
+++++|+++|||||++++|+++..++.+++++||++|+++++|+++++|+++||||||||+|+|+|.++...++ +.+++
T Consensus 358 ~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~-~e~~~ 436 (713)
T COG2217 358 RALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDG-DEDEL 436 (713)
T ss_pred HHHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888 88899
Q ss_pred HHHHHHHH---------HHHHHHHhcccccCCCCCcCccceeeeecCcEEEEEcCeEEEEechhhhhhCCCCCCcchHHH
Q 039776 626 YELVAATE---------AIIEYANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDNNIDIPPDTEEM 696 (922)
Q Consensus 626 ~~~~~~~e---------ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 696 (922)
+.+++++| ||+++++..+ ..+...|+.++|+|+++.++|+.+.+|+++++.+++.+.+. ....
T Consensus 437 L~laAalE~~S~HPiA~AIv~~a~~~~-------~~~~~~~~~i~G~Gv~~~v~g~~v~vG~~~~~~~~~~~~~~-~~~~ 508 (713)
T COG2217 437 LALAAALEQHSEHPLAKAIVKAAAERG-------LPDVEDFEEIPGRGVEAEVDGERVLVGNARLLGEEGIDLPL-LSER 508 (713)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHhcC-------CCCccceeeeccCcEEEEECCEEEEEcCHHHHhhcCCCccc-hhhh
Confidence 99999988 7777766532 33445599999999999999999999999999998887765 5566
Q ss_pred HHHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhH
Q 039776 697 LTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQK 776 (922)
Q Consensus 697 ~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K 776 (922)
.+.+..+|++.++++.|++++|+++++|++||+++++|++||++|++++|+|||+..+|+++|+++||+++++++.|+||
T Consensus 509 ~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~AellPedK 588 (713)
T COG2217 509 IEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELLPEDK 588 (713)
T ss_pred HHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCCcHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 039776 777 AEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWA 856 (922)
Q Consensus 777 ~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~ 856 (922)
.++|++||++|++|+|||||+||+|||++|||||+||+|+|.++++||++++++++..+++++++||+++++||||+.|+
T Consensus 589 ~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~eaADvvL~~~dL~~v~~ai~lsr~t~~~IkqNl~~A 668 (713)
T COG2217 589 AEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMRDDLSAVPEAIDLSRATRRIIKQNLFWA 668 (713)
T ss_pred HHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhhcchhhhhhhhhccccC
Q 039776 857 LGYNLLGITIAAGAIFPTTRFRLPPWIAGAAMATSSVSVVCSSLLLKNY 905 (922)
Q Consensus 857 ~~~n~~~i~~a~~~~~~~~g~~l~p~~a~~~~~~ss~~v~~~sl~l~~~ 905 (922)
+.||+++||+|++++ ++||+|+++|.+||++|++|||||+++
T Consensus 669 ~~yn~~~iplA~~g~-------l~p~~A~~am~~SSv~VvlNaLRL~~~ 710 (713)
T COG2217 669 FGYNAIAIPLAAGGL-------LTPWIAALAMSGSSVLVVLNALRLLRS 710 (713)
T ss_pred HHHHHHHHHHHHHhh-------cCHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 999999999999763 899999999999999999999999875
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=5.6e-120 Score=1106.01 Aligned_cols=796 Identities=33% Similarity=0.558 Sum_probs=679.8
Q ss_pred EEEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCccccccccc--------
Q 039776 71 VCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIPISTGE-------- 142 (922)
Q Consensus 71 ~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~~~~~-------- 142 (922)
+.++.|+||+|++|+.++++++++++|+.++.+++. +.++..+ .+.+.+.+.+++.||++.......
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~ 78 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESSI 78 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcCCccccccccccccccccc
Confidence 578999999999999999999999999999999984 4455432 367899999999999876422100
Q ss_pred -----------------ccccceeeeecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHH
Q 039776 143 -----------------DIVSKIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIE 205 (922)
Q Consensus 143 -----------------~~~~~~~~~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~ 205 (922)
....+.++.++||+|++|++.+++.+.+.+||.++++++.+++..+.+ ..+++++.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I~ 155 (834)
T PRK10671 79 PSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAVE 155 (834)
T ss_pred CchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHHH
Confidence 001256789999999999999999999999999999999999988873 245677888888
Q ss_pred hhCCCCcccccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhhhhHHHHH-HHHHH
Q 039776 206 STASGHFKARIFPEGEGREAQKQAEIKKYYRSFLWSLAFTIPVFLTSMVFMYIPGIKNVLDTKIVNMLTIGEII-RWVLS 284 (922)
Q Consensus 206 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~la~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~la 284 (922)
+.| |.+.+..+........+...++..+++.+++.+++.+.++++++.+...+.. ++... ...|+ .++++
T Consensus 156 ~~G---y~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~ 226 (834)
T PRK10671 156 KAG---YGAEAIEDDAKRRERQQETAQATMKRFRWQAIVALAVGIPVMVWGMIGDNMM-VTADN-----RSLWLVIGLIT 226 (834)
T ss_pred hcC---CCccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCccc-----hhHHHHHHHHH
Confidence 887 6554322211111111110111123344555555555554444332110000 00000 01243 35678
Q ss_pred HhhhhhccHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHhhCCCccCcchhhHHHHHHHHHHHHHHHHHHH
Q 039776 285 TPVQFIVGRRFYTGSYKALRIGSPNMDVLIALGTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLA 364 (922)
Q Consensus 285 ~~v~~~~~~~~~~~a~~~l~~~~~~~~~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~ 364 (922)
+|+++|+|||||++||++++++++|||+|+++++++||+||++..+.........++.||++++++++++++|+++|.+.
T Consensus 227 ~~~~~~~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~ 306 (834)
T PRK10671 227 LAVMVFAGGHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHMLEARA 306 (834)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999987653211111112569999999999999999999999
Q ss_pred HhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEecceeeecccccCCCccc
Q 039776 365 KGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSYVNESMITGEAWPV 444 (922)
Q Consensus 365 ~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~~~vdes~lTGEs~pv 444 (922)
+.|+++.+++|.++.|++++++| ||. +++|+.++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+
T Consensus 307 ~~~~~~~~~~L~~l~p~~a~~~~---~~~---~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTGEs~pv 380 (834)
T PRK10671 307 RQRSSKALEKLLDLTPPTARVVT---DEG---EKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQ 380 (834)
T ss_pred HHHHHHHHHHHhccCCCEEEEEe---CCc---EEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcCCCCCE
Confidence 99999999999999999999997 565 688999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhh
Q 039776 445 AKREGDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGN 524 (922)
Q Consensus 445 ~k~~g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (922)
.|++||.||+||+|.+|.+.++|+++|.+|.+++|.+++++++..++|+|+.+|+++++|+|++++++++++++|++.+.
T Consensus 381 ~k~~gd~V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~~~~~ 460 (834)
T PRK10671 381 QKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGP 460 (834)
T ss_pred ecCCCCEEEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876532
Q ss_pred cCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcc
Q 039776 525 FHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTM 604 (922)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTL 604 (922)
. ..+.+++.+++++|+++|||||++++|+++..++.+++++||++|+++++|+++++|++||||||||
T Consensus 461 ~------------~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDKTGTL 528 (834)
T PRK10671 461 A------------PQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTL 528 (834)
T ss_pred c------------hHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcCCCcc
Confidence 0 1356788899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEcccccCHHHHHHHHHHHH---------HHHHHHHhcccccCCCCCcCccceeeeecCcEEEEEcCeEEE
Q 039776 605 TIGKPVVVNTKLLKNMVLRDFYELVAATE---------AIIEYANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIM 675 (922)
Q Consensus 605 T~~~~~v~~~~~~~~~~~~~~~~~~~~~e---------ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~~~~~~ 675 (922)
|+|+|+|.++...++.+.++++.+++++| |++++++.. ..+...+|++++|.|+++.+++..+.
T Consensus 529 T~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~-------~~~~~~~~~~~~g~Gv~~~~~g~~~~ 601 (834)
T PRK10671 529 TEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDM-------TLPQVNGFRTLRGLGVSGEAEGHALL 601 (834)
T ss_pred ccCceEEEEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhC-------CCCCcccceEecceEEEEEECCEEEE
Confidence 99999999998877777888888888877 777766531 23456788999999999999999999
Q ss_pred EechhhhhhCCCCCCcchHHHHHHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHH
Q 039776 676 VGNKSLMLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTA 755 (922)
Q Consensus 676 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a 755 (922)
+|+++++.+.+... +..++..+.+++.|.+.++++.|+.++|.+.+.|++||++++++++|++.|++++|+|||+..++
T Consensus 602 ~G~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a 680 (834)
T PRK10671 602 LGNQALLNEQQVDT-KALEAEITAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTA 680 (834)
T ss_pred EeCHHHHHHcCCCh-HHHHHHHHHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHH
Confidence 99999998766542 23445566677889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhH
Q 039776 756 KSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDE 835 (922)
Q Consensus 756 ~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l 835 (922)
..+++++||+.+++++.|++|.++++.++.+++.|+|+|||.||++|++.||+||+||++++.++++||+++++++++.|
T Consensus 681 ~~ia~~lgi~~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgia~g~g~~~a~~~ad~vl~~~~~~~i 760 (834)
T PRK10671 681 NAIAKEAGIDEVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGV 760 (834)
T ss_pred HHHHHHcCCCEEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeEEecCCCHHHHHhCCEEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhhcchhhhhhhhhccccCCCCc
Q 039776 836 ITAIDLSRKTFSRIRINYIWALGYNLLGITIAAGAIFPTTRFRLPPWIAGAAMATSSVSVVCSSLLLKNYKKPK 909 (922)
Q Consensus 836 ~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~~~~~~~~g~~l~p~~a~~~~~~ss~~v~~~sl~l~~~~~~~ 909 (922)
..++++||+++++|+||+.|++.||++++|+|+|.++|++|+.++||+|+++|.+||++|++|||||++|++|+
T Consensus 761 ~~~i~l~r~~~~~i~~Nl~~a~~yn~~~i~~a~g~~~p~~g~~l~p~~a~~~m~~ss~~vv~nslrl~~~~~~~ 834 (834)
T PRK10671 761 ADALAISRATLRNMKQNLLGAFIYNSLGIPIAAGILWPFTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE 834 (834)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcccCHHHHHHHhcccceeehhhhHHhcCCCCCC
Confidence 99999999999999999999999999999999999999888779999999999999999999999998877653
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=1e-107 Score=976.68 Aligned_cols=678 Identities=27% Similarity=0.442 Sum_probs=585.2
Q ss_pred cceeeeecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhCCCCcccccCCCCcchhh
Q 039776 146 SKIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTASGHFKARIFPEGEGREA 225 (922)
Q Consensus 146 ~~~~~~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~a~~~~~~~~~~~ 225 (922)
.+.++.++||+|++|++.+|+.+.+.+||.++++++.+++..+.|++.. . +++.+.+++.| |.+..... ..+
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~G---y~a~~~~~--~~~- 124 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAG---FSLRDEQA--AAA- 124 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcc---cccccccc--hhh-
Confidence 4678899999999999999999999999999999999999999998763 2 66777788777 65532211 011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhhhhHHHHHHHHHHHhhhhhccHHHHHHHHHHHHc
Q 039776 226 QKQAEIKKYYRSFLWSLAFTIPVFLTSMVFMYIPGIKNVLDTKIVNMLTIGEIIRWVLSTPVQFIVGRRFYTGSYKALRI 305 (922)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~la~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~~~~~~~a~~~l~~ 305 (922)
+ .+.+.. + ...+++. +...|++.+... ..+. .+ .++.++++ .++.|+||+++||+++++
T Consensus 125 ~--~~~~~~-~--~~~~~~~---~~~~~~~~~~~~---~~~~----~~---~~~~~~~~---~~~~~~~~~~~a~~~l~~ 183 (741)
T PRK11033 125 A--PESRLK-S--ENLPLIT---LAVMMAISWGLE---QFNH----PF---GQLAFIAT---TLVGLYPIARKALRLIRS 183 (741)
T ss_pred h--HHHHHH-H--HHHHHHH---HHHHHHHHHHHh---hhhh----HH---HHHHHHHH---HHHHHHHHHHHHHHHHHc
Confidence 1 111111 1 1111111 111222111100 0000 00 12333333 357889999999999999
Q ss_pred CCC-CchhHHHHHHHHHHHHHHHHHHHHhhCCCccCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEE
Q 039776 306 GSP-NMDVLIALGTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAAT 384 (922)
Q Consensus 306 ~~~-~~~~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~ 384 (922)
+++ |||+|++++++++++++. | +.++++++++++|+++|.++++|+++.+++|.++.|.+++
T Consensus 184 ~~~~~~~~L~~~a~~~a~~~~~----------------~-~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~ 246 (741)
T PRK11033 184 GSPFAIETLMSVAAIGALFIGA----------------T-AEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETAT 246 (741)
T ss_pred CCCCCccHHHHHHHHHHHHHcc----------------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 885 999999999988877531 3 4468888999999999999999999999999999999999
Q ss_pred EEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEecceeeecccccCCCcccccCCCCeeecCcccccceEE
Q 039776 385 LLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSYVNESMITGEAWPVAKREGDTVTGGTLNENGVLH 464 (922)
Q Consensus 385 v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~~~vdes~lTGEs~pv~k~~g~~v~~Gs~~~~g~~~ 464 (922)
++| ||+ +++|++++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+.|++||.||+||.+.+|.++
T Consensus 247 vir---~g~---~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k~~Gd~V~aGt~~~~G~~~ 320 (741)
T PRK11033 247 RLR---DGE---REEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGEKVPAGATSVDRLVT 320 (741)
T ss_pred EEE---CCE---EEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCCCCEecCCCCeeccCCEEcCceEE
Confidence 998 776 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHH
Q 039776 465 IKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELAL 544 (922)
Q Consensus 465 ~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (922)
++|+++|.+|.++||.+++++++.+++|+|+.+|+++++|+|++++++++++++|++... .+|..++
T Consensus 321 i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~~-------------~~~~~~i 387 (741)
T PRK11033 321 LEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLFA-------------APWQEWI 387 (741)
T ss_pred EEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------------CCHHHHH
Confidence 999999999999999999999999999999999999999999999999999988754321 1466788
Q ss_pred HHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccCHHH
Q 039776 545 QFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRD 624 (922)
Q Consensus 545 ~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~ 624 (922)
.+++++|+++|||+|++++|+++..++.+++|+||++|+++++|+++++|+||||||||||+|+|+|.++..+++.+.++
T Consensus 388 ~~a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~ 467 (741)
T PRK11033 388 YRGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESE 467 (741)
T ss_pred HHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998887778888
Q ss_pred HHHHHHHHH---------HHHHHHHhcccccCCCCCcCccceeeeecCcEEEEEcCeEEEEechhhhhhCCCCCCcchHH
Q 039776 625 FYELVAATE---------AIIEYANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDNNIDIPPDTEE 695 (922)
Q Consensus 625 ~~~~~~~~e---------ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 695 (922)
++.++++.| |+++++++.+ ...+...+++..+|.|+++.+++..+.+|+++++.+ .+++..+
T Consensus 468 ~l~~aa~~e~~s~hPia~Ai~~~a~~~~-----~~~~~~~~~~~~~g~Gv~~~~~g~~~~ig~~~~~~~----~~~~~~~ 538 (741)
T PRK11033 468 LLALAAAVEQGSTHPLAQAIVREAQVRG-----LAIPEAESQRALAGSGIEGQVNGERVLICAPGKLPP----LADAFAG 538 (741)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhcC-----CCCCCCcceEEEeeEEEEEEECCEEEEEecchhhhh----ccHHHHH
Confidence 888888776 7888876542 234556788999999999999999999999998864 2334445
Q ss_pred HHHHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhh
Q 039776 696 MLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQ 775 (922)
Q Consensus 696 ~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~ 775 (922)
..+.++..|.+.+++++|++++|++.++|++|||++++|++|+++|++++|+|||+..++.++|+++||+ ++++++|++
T Consensus 539 ~~~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~-~~~~~~p~~ 617 (741)
T PRK11033 539 QINELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID-FRAGLLPED 617 (741)
T ss_pred HHHHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-eecCCCHHH
Confidence 5667788999999999999999999999999999999999999999999999999999999999999997 678899999
Q ss_pred HHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 039776 776 KAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIW 855 (922)
Q Consensus 776 K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~ 855 (922)
|.++++.+|+. +.|+|||||.||+|||+.|||||+||++++.++++||+++.++++..|+.++++||+++++|+||+.|
T Consensus 618 K~~~v~~l~~~-~~v~mvGDgiNDapAl~~A~vgia~g~~~~~a~~~adivl~~~~l~~l~~~i~~sr~~~~~I~~nl~~ 696 (741)
T PRK11033 618 KVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLAQMIELSRATHANIRQNITI 696 (741)
T ss_pred HHHHHHHHhcC-CCEEEEECCHHhHHHHHhCCeeEEecCCCHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999965 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhhcchhhhhhhhhccccCC
Q 039776 856 ALGYNLLGITIAAGAIFPTTRFRLPPWIAGAAMATSSVSVVCSSLLLKNYK 906 (922)
Q Consensus 856 ~~~~n~~~i~~a~~~~~~~~g~~l~p~~a~~~~~~ss~~v~~~sl~l~~~~ 906 (922)
++.||++++++++.++ ++||+|+++|.+||++|++|||||.+||
T Consensus 697 a~~~n~~~i~~a~~g~-------~~~~~a~~~~~~ss~~v~~Nslrl~~~~ 740 (741)
T PRK11033 697 ALGLKAIFLVTTLLGI-------TGLWLAVLADSGATALVTANALRLLRKR 740 (741)
T ss_pred HHHHHHHHHHHHHHhh-------hHHHHHHHHHcChHHHHHHHHHhhcccC
Confidence 9999999999997443 7899999999999999999999998775
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=1.4e-97 Score=867.06 Aligned_cols=553 Identities=50% Similarity=0.815 Sum_probs=510.8
Q ss_pred ccHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHhhCCCccCcchhhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039776 291 VGRRFYTGSYKALRIGSPNMDVLIALGTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLAKGKTSE 370 (922)
Q Consensus 291 ~~~~~~~~a~~~l~~~~~~~~~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~ 370 (922)
+||||+++||++++++++|||+|++++++++|++|+|.++.....+....+.||++++++++++++|+++|.++++|+++
T Consensus 1 ~g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~ 80 (562)
T TIGR01511 1 AGRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASD 80 (562)
T ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999998876432222233579999999999999999999999999999
Q ss_pred HHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEecceeeecccccCCCcccccCCCC
Q 039776 371 AIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSYVNESMITGEAWPVAKREGD 450 (922)
Q Consensus 371 ~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~~~vdes~lTGEs~pv~k~~g~ 450 (922)
.+++|.++.|++++++|+ +|+ +++|++++|+|||+|+|++||+|||||+|++|++.||||+|||||.|+.|++||
T Consensus 81 ~~~~L~~~~p~~a~~~~~--~~~---~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~gd 155 (562)
T TIGR01511 81 ALSKLAKLQPSTATLLTK--DGS---IEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESLPVPKKVGD 155 (562)
T ss_pred HHHHHHhcCCCEEEEEEC--CCe---EEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCCcEEcCCCC
Confidence 999999999999999972 344 578999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCC
Q 039776 451 TVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPE 530 (922)
Q Consensus 451 ~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (922)
.||+||.|.+|.++++|+++|.+|.++|+.+++++++.+++|+|+++|+++++|+|+++++++++++.|.
T Consensus 156 ~V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~---------- 225 (562)
T TIGR01511 156 PVIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL---------- 225 (562)
T ss_pred EEEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999988887663
Q ss_pred cccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceE
Q 039776 531 SWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPV 610 (922)
Q Consensus 531 ~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~ 610 (922)
.++.+++++|+++|||+|++++|+++..++.+++++||++|+++++|+|+++|+||||||||||+|+|+
T Consensus 226 -----------~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~ 294 (562)
T TIGR01511 226 -----------FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPT 294 (562)
T ss_pred -----------HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEE
Confidence 246789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcccccCHHHHHHHHHHHH---------HHHHHHHhcccccCCCCCcCccceeeeecCcEEEEEcCeEEEEechhh
Q 039776 611 VVNTKLLKNMVLRDFYELVAATE---------AIIEYANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKSL 681 (922)
Q Consensus 611 v~~~~~~~~~~~~~~~~~~~~~e---------ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~~~~~~~g~~~~ 681 (922)
+.++...++.+.++++.+++++| |+++++++.+. ......++++++|+|+.+.+++.++.+|++++
T Consensus 295 v~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~-----~~~~~~~~~~~~g~Gi~~~~~g~~~~iG~~~~ 369 (562)
T TIGR01511 295 VTDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGI-----TLVEVSDFKAIPGIGVEGTVEGTKIQLGNEKL 369 (562)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC-----CcCCCCCeEEECCceEEEEECCEEEEEECHHH
Confidence 99998887777888899888877 77777765421 22345678899999999999999999999999
Q ss_pred hhhCCCCCCcchHHHHHHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Q 039776 682 MLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASE 761 (922)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~ 761 (922)
+.+++.+.++ ..+.|.+.++++.|++++|.+.++|++||++++++++||++|++++|+|||+...+..++++
T Consensus 370 ~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~ 441 (562)
T TIGR01511 370 LGENAIKIDG--------KAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKE 441 (562)
T ss_pred HHhCCCCCCh--------hhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHH
Confidence 9877665432 23568899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHH
Q 039776 762 VGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDL 841 (922)
Q Consensus 762 ~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~ 841 (922)
+|++ +++++.|++|.++++.++++++.|+|+|||.||++|+++||+||+||++++.+++.||+++.++++..++.++++
T Consensus 442 lgi~-~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vgia~g~g~~~a~~~Advvl~~~~l~~l~~~i~l 520 (562)
T TIGR01511 442 LGIN-VRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAIGAGTDVAIEAADVVLMRNDLNDVATAIDL 520 (562)
T ss_pred cCCc-EEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEEEEeCCcCHHHHhhCCEEEeCCCHHHHHHHHHH
Confidence 9997 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHH
Q 039776 842 SRKTFSRIRINYIWALGYNLLGITIAAGAIFPTTRFRLPPWIA 884 (922)
Q Consensus 842 ~r~~~~~i~~n~~~~~~~n~~~i~~a~~~~~~~~g~~l~p~~a 884 (922)
||+++++|+||+.|++.||++++++|++++.|+ |+.++||+|
T Consensus 521 sr~~~~~i~qn~~~a~~~n~~~i~la~~~~~~~-g~~~~p~~a 562 (562)
T TIGR01511 521 SRKTLRRIKQNLLWAFGYNVIAIPIAAGVLYPI-GILLSPAVA 562 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccCCCcC
Confidence 999999999999999999999999999998887 677999864
No 6
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=8.3e-90 Score=805.18 Aligned_cols=540 Identities=48% Similarity=0.749 Sum_probs=494.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCCCccCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeec
Q 039776 310 MDVLIALGTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMD 389 (922)
Q Consensus 310 ~~~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~ 389 (922)
||+|+++++..+|++|.| ..+++++++++++++++.++++|+++.+++|.++.|.+++++|
T Consensus 1 ~d~l~~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r-- 61 (556)
T TIGR01525 1 MDLLMALATIAAYAMGLV-----------------LEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQ-- 61 (556)
T ss_pred CcHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE--
Confidence 899999999999988743 2457889999999999999999999999999999999999998
Q ss_pred CC-CCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEecceeeecccccCCCcccccCCCCeeecCcccccceEEEEEE
Q 039776 390 EE-GNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKAT 468 (922)
Q Consensus 390 ~~-g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~~~vdes~lTGEs~pv~k~~g~~v~~Gs~~~~g~~~~~v~ 468 (922)
| |+ +++|+.++|+|||+|++++||+|||||+|++|++.||||+|||||.|+.|++|+.||+||.+.+|.++++|+
T Consensus 62 -~~g~---~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~~~~~v~ 137 (556)
T TIGR01525 62 -GDGS---EEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGSLTIRVT 137 (556)
T ss_pred -CCCe---EEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCceEEEEEE
Confidence 5 35 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHh
Q 039776 469 RVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGI 548 (922)
Q Consensus 469 ~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 548 (922)
++|.+|+++++.+++++++.+++|+++.++++++++++++++++++++++|++.+. . .++.+++
T Consensus 138 ~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~--------------~--~~~~~~~ 201 (556)
T TIGR01525 138 KLGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGA--------------L--GALYRAL 201 (556)
T ss_pred EecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------c--hHHHHHH
Confidence 99999999999999999999999999999999999999999999999988876432 1 5678999
Q ss_pred heeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccC--HHHHH
Q 039776 549 SVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMV--LRDFY 626 (922)
Q Consensus 549 ~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~--~~~~~ 626 (922)
++++++|||+|++++|+++..++.+++++|+++|+++++|+++++|++|||||||||+|+|+|.++...++.. .++++
T Consensus 202 ~vlv~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l 281 (556)
T TIGR01525 202 AVLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELL 281 (556)
T ss_pred HHHhhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998776554 67888
Q ss_pred HHHHHHH---------HHHHHHHhcccccCCCCCcCcc-ceeeeecCcEEEEEcC-eEEEEechhhhhhCCCCCCcchHH
Q 039776 627 ELVAATE---------AIIEYANKFREDEENPMWPEAQ-DFVSITGHGVKAIVRN-KEIMVGNKSLMLDNNIDIPPDTEE 695 (922)
Q Consensus 627 ~~~~~~e---------ai~~~~~~~~~~~~~~~~~~~~-~~~~~~g~gi~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 695 (922)
.+++++| |+++++++.+.+. .. . ++++++|+|+++.+++ .++.+|+++++.....+.+ ..+.
T Consensus 282 ~~a~~~e~~~~hp~~~Ai~~~~~~~~~~~-----~~-~~~~~~~~~~gi~~~~~g~~~~~lg~~~~~~~~~~~~~-~~~~ 354 (556)
T TIGR01525 282 ALAAALEQSSSHPLARAIVRYAKKRGLEL-----PK-QEDVEEVPGKGVEATVDGQEEVRIGNPRLLELAAEPIS-ASPD 354 (556)
T ss_pred HHHHHHhccCCChHHHHHHHHHHhcCCCc-----cc-ccCeeEecCCeEEEEECCeeEEEEecHHHHhhcCCCch-hhHH
Confidence 8887766 8888887643221 11 2 6678899999999999 7999999998844333322 2233
Q ss_pred HHHHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHhCCceEEecCChh
Q 039776 696 MLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQ-IRSILVTGDNWGTAKSIASEVGIETVIAEAKPE 774 (922)
Q Consensus 696 ~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~g-i~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~ 774 (922)
..+.+...|.+.++++.|++++|.+.++|++||++++++++|+++| ++++|+|||+..++.++++++|++++|+++.|+
T Consensus 355 ~~~~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~p~ 434 (556)
T TIGR01525 355 LLNEGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELLPE 434 (556)
T ss_pred HHHHHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCCHH
Confidence 4455677889999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHH
Q 039776 775 QKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYI 854 (922)
Q Consensus 775 ~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~ 854 (922)
+|.++++.+++.++.|+|+|||.||++|+++||+|++||++++.+++.||+++.++++..+.+++++||++++++++|+.
T Consensus 435 ~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i~~~r~~~~~i~~nl~ 514 (556)
T TIGR01525 435 DKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGSDVAIEAADIVLLNDDLSSLPTAIDLSRKTRRIIKQNLA 514 (556)
T ss_pred HHHHHHHHHHHcCCEEEEEECChhHHHHHhhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCHH-HHHHHhhcchhhhhhhhhcc
Q 039776 855 WALGYNLLGITIAAGAIFPTTRFRLPPW-IAGAAMATSSVSVVCSSLLL 902 (922)
Q Consensus 855 ~~~~~n~~~i~~a~~~~~~~~g~~l~p~-~a~~~~~~ss~~v~~~sl~l 902 (922)
|+++||++++++|++++ ++|| +|+++|.+||++|++||+|+
T Consensus 515 ~a~~~N~~~i~~a~~g~-------~~p~~~aa~~m~~ss~~v~lns~r~ 556 (556)
T TIGR01525 515 WALGYNLVAIPLAAGGL-------LPLWLLAVLLHEGSTVLVVLNSLRL 556 (556)
T ss_pred HHHHHHHHHHHHHHHHh-------cCHHHHHHHHHhchHHHHHHHhhcC
Confidence 99999999999998664 7896 99999999999999999985
No 7
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=3.5e-90 Score=802.69 Aligned_cols=524 Identities=39% Similarity=0.612 Sum_probs=483.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCCCccCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeec
Q 039776 310 MDVLIALGTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMD 389 (922)
Q Consensus 310 ~~~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~ 389 (922)
||+|++++...+|+++ .||+. ++++++++++++++.++++|+++.+++|.++.|.+++|+|
T Consensus 1 ~~~l~~~a~~~~~~~~----------------~~~~~-~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r-- 61 (536)
T TIGR01512 1 VDLLMALAALGAVAIG----------------EYLEG-ALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLR-- 61 (536)
T ss_pred CcHHHHHHHHHHHHHh----------------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE--
Confidence 7899999988888764 36666 7788899999999999999999999999999999999998
Q ss_pred CCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEecceeeecccccCCCcccccCCCCeeecCcccccceEEEEEEE
Q 039776 390 EEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATR 469 (922)
Q Consensus 390 ~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~~~vdes~lTGEs~pv~k~~g~~v~~Gs~~~~g~~~~~v~~ 469 (922)
||+ +++|++++|+|||+|.+++||+|||||+|++|++.||||+|||||.|+.|++||.||+||.+.+|.++++|++
T Consensus 62 -~g~---~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~~~~V~~ 137 (536)
T TIGR01512 62 -GGS---LEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVLTIVVTK 137 (536)
T ss_pred -CCE---EEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceEEEEEEE
Confidence 675 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhh
Q 039776 470 VGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGIS 549 (922)
Q Consensus 470 ~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 549 (922)
+|.+|.+|++.+++++++.+++|+|+.++++++++++++++++++.+++|++... +..++.++++
T Consensus 138 ~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s 202 (536)
T TIGR01512 138 LPADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLKR---------------WPFWVYRALV 202 (536)
T ss_pred eccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------cHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888887765321 1237888999
Q ss_pred eeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccCHHHHHHHH
Q 039776 550 VMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELV 629 (922)
Q Consensus 550 vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~ 629 (922)
+++++|||+|++++|+++..++.+++++||++|+++++|+++++|++|||||||||+|+|++.++.+ .++++++
T Consensus 203 vlv~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~------~~~l~~a 276 (536)
T TIGR01512 203 LLVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVP------AEVLRLA 276 (536)
T ss_pred HHhhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeH------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864 2677777
Q ss_pred HHHH---------HHHHHHHhcccccCCCCCcCccceeeeecCcEEEEEcCeEEEEechhhhhhCCCCCCcchHHHHHHH
Q 039776 630 AATE---------AIIEYANKFREDEENPMWPEAQDFVSITGHGVKAIVRNKEIMVGNKSLMLDNNIDIPPDTEEMLTET 700 (922)
Q Consensus 630 ~~~e---------ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 700 (922)
++.| |+++++++.. ...+++..+|+|+++.+++.++.+|+++++.+.+.. ..
T Consensus 277 ~~~e~~~~hp~~~Ai~~~~~~~~---------~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~~~~----------~~ 337 (536)
T TIGR01512 277 AAAEQASSHPLARAIVDYARKRE---------NVESVEEVPGEGVRAVVDGGEVRIGNPRSLEAAVGA----------RP 337 (536)
T ss_pred HHHhccCCCcHHHHHHHHHHhcC---------CCcceEEecCCeEEEEECCeEEEEcCHHHHhhcCCc----------ch
Confidence 7765 7777776532 345677889999999999999999999988765542 23
Q ss_pred hccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHH
Q 039776 701 EGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQI-RSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEK 779 (922)
Q Consensus 701 ~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi-~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~ 779 (922)
...+.+.++++.|+.+.|.+.++|++||+++++|++|+++|+ +++|+|||+..++..+++++|++++|+++.|++|.++
T Consensus 338 ~~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~p~~K~~~ 417 (536)
T TIGR01512 338 ESAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELLPEDKLEI 417 (536)
T ss_pred hhCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccCcHHHHHH
Confidence 446778899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEcCCcccHHHHHhCCceEEec-CCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039776 780 VEELQASGYTVAMVGDGINDSPALVAADVGMAIG-AGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALG 858 (922)
Q Consensus 780 v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~ 858 (922)
++.++.+++.|+|+|||.||++|+++||+||+|| ++++.+++.||+++.++++..+.+++++||++++++++|+.|++.
T Consensus 418 i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~nl~~a~~ 497 (536)
T TIGR01512 418 VKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAIRLARRTRRIVKQNVVIALG 497 (536)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEeCCCccHHHHHhCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCHHHHHHHhhcchhhhhhhhhccc
Q 039776 859 YNLLGITIAAGAIFPTTRFRLPPWIAGAAMATSSVSVVCSSLLLK 903 (922)
Q Consensus 859 ~n~~~i~~a~~~~~~~~g~~l~p~~a~~~~~~ss~~v~~~sl~l~ 903 (922)
||++++++|+.++ ++||+|+++|.+||++|++||+|++
T Consensus 498 ~n~~~i~~a~~G~-------~~p~~aa~~m~~ss~~v~~ns~r~~ 535 (536)
T TIGR01512 498 IILLLILLALFGV-------LPLWLAVLGHEGSTVLVILNALRLL 535 (536)
T ss_pred HHHHHHHHHHHhh-------ccHHHHHHHHcChHHHHHHHHHhhc
Confidence 9999999998543 8999999999999999999999985
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=2.8e-87 Score=803.62 Aligned_cols=516 Identities=27% Similarity=0.378 Sum_probs=443.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEE
Q 039776 347 SSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVL 426 (922)
Q Consensus 347 ~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl 426 (922)
+++++++++++..++.++++|+++.+++|.++.+.+++|+| ||+ +++|+++||+|||+|.+++||+|||||+|+
T Consensus 58 ~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~R---dg~---~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi 131 (755)
T TIGR01647 58 FVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVLR---DGK---WQEIPASELVPGDVVRLKIGDIVPADCRLF 131 (755)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE---CCE---EEEEEhhhCcCCCEEEECCCCEEeceEEEE
Confidence 35566777888899999999999999999999999999998 776 789999999999999999999999999999
Q ss_pred ecc-eeeecccccCCCcccccCCCCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchh
Q 039776 427 WGK-SYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFV 505 (922)
Q Consensus 427 ~g~-~~vdes~lTGEs~pv~k~~g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 505 (922)
+|+ +.||||+|||||.|+.|++||.+|+||.+.+|.++++|++||.+|++|++.+++++++..++|+|+.+++++++++
T Consensus 132 ~g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~~~~~ 211 (755)
T TIGR01647 132 EGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIGLFLI 211 (755)
T ss_pred ecCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHHHHHH
Confidence 998 8999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCch
Q 039776 506 PLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQ 585 (922)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~ 585 (922)
+++++++++.+++|++... .+|..++.+++++++++|||+||+++|++++.+.++|+|+|+++|+++
T Consensus 212 ~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilvk~l~ 278 (755)
T TIGR01647 212 VLIGVLVLIELVVLFFGRG-------------ESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLT 278 (755)
T ss_pred HHHHHHHHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEEcccH
Confidence 9999888888877765211 156788899999999999999999999999999999999999999999
Q ss_pred HhhhhcCccEEEecCCCcccCCceEEEEEEcccc-cCHHHHHHHHHHHH----------HHHHHHHhcccccCCCCCcCc
Q 039776 586 ALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKN-MVLRDFYELVAATE----------AIIEYANKFREDEENPMWPEA 654 (922)
Q Consensus 586 ~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~-~~~~~~~~~~~~~e----------ai~~~~~~~~~~~~~~~~~~~ 654 (922)
++|+||++|+||||||||||+|+|.|.++...++ .+.++++.+++.++ |+++++++.+...........
T Consensus 279 alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~~~~~~~~~~ 358 (755)
T TIGR01647 279 AIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEARDGYKVLEF 358 (755)
T ss_pred HHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHHHhcCceEEE
Confidence 9999999999999999999999999999987653 56777777665431 777776543211111111111
Q ss_pred cceeeeecCcEEEEEc----CeE--EEEechhhhhhCCCC---CCcchHHHHHHHhccCceEEEEEE-C----CEEEEEE
Q 039776 655 QDFVSITGHGVKAIVR----NKE--IMVGNKSLMLDNNID---IPPDTEEMLTETEGMAQTEILVSV-D----GELTGVL 720 (922)
Q Consensus 655 ~~~~~~~g~gi~~~~~----~~~--~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~v~~-~----~~~~G~~ 720 (922)
.+|.. .++++...++ ++. +.+|+++.+.+.+.. .+++.++..+++..+|.+++++++ + .+++|++
T Consensus 359 ~pf~~-~~k~~~~~v~~~~~g~~~~~~kGa~e~il~~c~~~~~~~~~~~~~~~~~~~~G~rvl~vA~~~~e~~l~~~Gli 437 (755)
T TIGR01647 359 VPFDP-VDKRTEATVEDPETGKRFKVTKGAPQVILDLCDNKKEIEEKVEEKVDELASRGYRALGVARTDEEGRWHFLGLL 437 (755)
T ss_pred eccCC-CCCeEEEEEEeCCCceEEEEEeCChHHHHHhcCCcHHHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEe
Confidence 22332 4667776663 443 457999988654322 223345556677889999999998 2 3899999
Q ss_pred EcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce------------------------------EEec
Q 039776 721 SISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET------------------------------VIAE 770 (922)
Q Consensus 721 ~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~------------------------------~~~~ 770 (922)
+++||+||+++++|++||++|++++|+|||+..+|+++|+++||.. +|++
T Consensus 438 ~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr 517 (755)
T TIGR01647 438 PLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGFAE 517 (755)
T ss_pred eccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEe
Confidence 9999999999999999999999999999999999999999999974 8999
Q ss_pred CChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHH
Q 039776 771 AKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIR 850 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~ 850 (922)
++|+||.++|+.+|++|+.|+|+|||+||+|||++|||||+||+|+|.++++||+|+++++|..++.++++||++++|++
T Consensus 518 ~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~~gtdvAkeaADivLl~d~l~~I~~ai~~gR~~~~ni~ 597 (755)
T TIGR01647 518 VFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAGATDAARSAADIVLTEPGLSVIVDAILESRKIFQRMK 597 (755)
T ss_pred cCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEecCCcHHHHHhCCEEEEcCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHH
Q 039776 851 INYIWALGYNLLGITIAAGAIFPTTRFRLPPWI 883 (922)
Q Consensus 851 ~n~~~~~~~n~~~i~~a~~~~~~~~g~~l~p~~ 883 (922)
+|+.|.+..|+..+...+...+ +.|+.++|+.
T Consensus 598 k~i~~~~~~n~~~~~~~~~~~l-~~~~~l~~~~ 629 (755)
T TIGR01647 598 SYVIYRIAETIRIVFFFGLLIL-ILNFYFPPIM 629 (755)
T ss_pred HHHHHHhcccHHHHHHHHHHHH-HhCcchhHHH
Confidence 9999999999976643332111 1233377754
No 9
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=2.1e-84 Score=751.36 Aligned_cols=504 Identities=26% Similarity=0.379 Sum_probs=422.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC-eEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEE
Q 039776 347 SSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPE-AATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYV 425 (922)
Q Consensus 347 ~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~-~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~v 425 (922)
..++++.++++.++|.++++|+++.+++|+++.|+ +++|+| ||+ .+++|++++|++||+|+|++||+||+||+|
T Consensus 69 ~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vir---~g~--~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~v 143 (679)
T PRK01122 69 TLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKLR---EPG--AAEEVPATELRKGDIVLVEAGEIIPADGEV 143 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEE---CCC--EEEEEEHHHcCCCCEEEEcCCCEEEEEEEE
Confidence 45566667899999999999999999999999886 799998 443 257899999999999999999999999999
Q ss_pred EecceeeecccccCCCcccccCCCCe---eecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhc
Q 039776 426 LWGKSYVNESMITGEAWPVAKREGDT---VTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASK 502 (922)
Q Consensus 426 l~g~~~vdes~lTGEs~pv~k~~g~~---v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 502 (922)
++|.+.||||+|||||.|+.|++|+. ||+||.+.+|.++++|+++|.+|.++|+.+++++++.+++|+|+..+.+..
T Consensus 144 ieG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~ 223 (679)
T PRK01122 144 IEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILLA 223 (679)
T ss_pred EEccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999999999999999988777766
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEee
Q 039776 503 YFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIK 582 (922)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k 582 (922)
+++.+.+++++..+.++++.+ ...++..++++++++|||+++.++|.+...++.+++|+|+++|
T Consensus 224 ~l~~i~l~~~~~~~~~~~~~g----------------~~~~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvLvk 287 (679)
T PRK01122 224 GLTIIFLLVVATLPPFAAYSG----------------GALSITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVIAT 287 (679)
T ss_pred hhhHHHHHHHHHHHHHHHHhC----------------chHHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCeeec
Confidence 655443333322222111111 0126778899999999999999999999999999999999999
Q ss_pred CchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccCHHHHHHHHHHHH---------HHHHHHHh-cccccCCC--C
Q 039776 583 GGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAATE---------AIIEYANK-FREDEENP--M 650 (922)
Q Consensus 583 ~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~e---------ai~~~~~~-~~~~~~~~--~ 650 (922)
+++++|++|++|+||||||||||+|+|.+.++.+.++.+.++++..++.++ |+++++++ .+...... .
T Consensus 288 ~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~~~~~~~~~~~ 367 (679)
T PRK01122 288 SGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAKQRFNLRERDLQSL 367 (679)
T ss_pred CchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhcCCCchhhccc
Confidence 999999999999999999999999999999998877777777877776654 78888765 22111000 0
Q ss_pred CcCccceeeeecCcEEE-EEcCeEEEEechhhh----hhCCCCCCcchHHHHHHHhccCceEEEEEECCEEEEEEEcCCC
Q 039776 651 WPEAQDFVSITGHGVKA-IVRNKEIMVGNKSLM----LDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISDP 725 (922)
Q Consensus 651 ~~~~~~~~~~~g~gi~~-~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~ 725 (922)
..+..+|... +++.+ .++++.+.+|+++.+ .+.+.+.+++.++..+++.++|.++++++.|++++|+++++|+
T Consensus 368 ~~~~~pF~s~--~~~~gv~~~g~~~~kGa~e~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~va~~~~~lG~i~l~D~ 445 (679)
T PRK01122 368 HATFVPFSAQ--TRMSGVDLDGREIRKGAVDAIRRYVESNGGHFPAELDAAVDEVARKGGTPLVVAEDNRVLGVIYLKDI 445 (679)
T ss_pred cceeEeecCc--CceEEEEECCEEEEECCHHHHHHHHHhcCCcChHHHHHHHHHHHhCCCcEEEEEECCeEEEEEEEecc
Confidence 1112233332 23333 357789999998654 3345555666666777888899999999999999999999999
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHh
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVA 805 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~ 805 (922)
+|||+++++++||++|++++|+|||+..+|.++|+++||++++++++||||.++|+.+|++|+.|+|+|||+||+|||++
T Consensus 446 ~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa~ 525 (679)
T PRK01122 446 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALAQ 525 (679)
T ss_pred CchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhcccC
Q 039776 806 ADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLL-----GITIAAGAIFPT 874 (922)
Q Consensus 806 A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~-----~i~~a~~~~~~~ 874 (922)
||||||||+|++.|+++||+|++++|+..+.+++++||++.-.-...-.|++. |-+ .+|..+...||.
T Consensus 526 ADVGIAMgsGTdvAkeAADiVLldd~~s~Iv~av~~GR~~~~tr~~~~~f~~~-n~~~~~~~i~p~~~~~~~~~ 598 (679)
T PRK01122 526 ADVGVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQLLMTRGALTTFSIA-NDVAKYFAIIPAMFAATYPQ 598 (679)
T ss_pred CCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHhhhHhhhhhhHH-HHHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999998443333455554 443 334444445554
No 10
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=2.8e-84 Score=749.68 Aligned_cols=489 Identities=28% Similarity=0.394 Sum_probs=411.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC-eEE-EEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEE
Q 039776 348 SMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPE-AAT-LLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYV 425 (922)
Q Consensus 348 ~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~-~~~-v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~v 425 (922)
.++++..+++.++|.++++|+++++++|+++.|+ +++ +.| ||+ +++|++++|+|||+|+|++||+||+||+|
T Consensus 70 ~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~r---dg~---~~~I~a~eLv~GDiV~v~~Gd~IPaDG~v 143 (673)
T PRK14010 70 IILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQ---DGS---YEMIDASDLKKGHIVRVATGEQIPNDGKV 143 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEe---CCE---EEEEEHHHcCCCCEEEECCCCcccCCeEE
Confidence 3344455789999999999999999999999886 786 455 676 78999999999999999999999999999
Q ss_pred EecceeeecccccCCCcccccCCC---CeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhc
Q 039776 426 LWGKSYVNESMITGEAWPVAKREG---DTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASK 502 (922)
Q Consensus 426 l~g~~~vdes~lTGEs~pv~k~~g---~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 502 (922)
++|.+.||||+|||||.|+.|++| +.||+||.+.+|+++++|+++|.+|+++|+.+++++++.+++|+|.....+..
T Consensus 144 ieG~~~VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~ 223 (673)
T PRK14010 144 IKGLATVDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLM 223 (673)
T ss_pred EEcceEEecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHH
Confidence 999999999999999999999999 88999999999999999999999999999999999999999999865544332
Q ss_pred chhhHHHHHHHHHHHHHHH-hhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEe
Q 039776 503 YFVPLVIILSFSTWLAWYL-AGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLI 581 (922)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~ 581 (922)
.+ .+.++++++|++ +..+ .++...+...+++++.++||+|+..+|++...++.+++|+|+++
T Consensus 224 ~l-----~ii~l~~~~~~~~~~~~------------~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLv 286 (673)
T PRK14010 224 TL-----TIIFLVVILTMYPLAKF------------LNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILA 286 (673)
T ss_pred HH-----hHHHHHHHHHHHHHHhh------------ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence 22 222222222222 1100 02333455667777778899999999999999999999999999
Q ss_pred eCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccCHHHHHHHHHHHH---------HHHHHHHhcccccCCCCCc
Q 039776 582 KGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAATE---------AIIEYANKFREDEENPMWP 652 (922)
Q Consensus 582 k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~e---------ai~~~~~~~~~~~~~~~~~ 652 (922)
|+++++|++|++|+||||||||||+|++.+.++.+.++.+.++++..+..++ |+++++++.+.+... ...
T Consensus 287 k~~~avE~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~~~~~-~~~ 365 (673)
T PRK14010 287 KSGRSVETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHIDLPQ-EVG 365 (673)
T ss_pred eCcHHHHHhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCCchh-hhc
Confidence 9999999999999999999999999998888877666666667777665543 888888754322100 001
Q ss_pred Cccceeee-ecCcEEEEEcCeEEEEechhhhhh----CCCCCCcchHHHHHHHhccCceEEEEEECCEEEEEEEcCCCcc
Q 039776 653 EAQDFVSI-TGHGVKAIVRNKEIMVGNKSLMLD----NNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLK 727 (922)
Q Consensus 653 ~~~~~~~~-~g~gi~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r 727 (922)
+..+|... .+.|+ .++++.+.+|+++++.+ .+...+.+.++..+++.++|.++++++.|++++|+++++|++|
T Consensus 366 ~~~pF~~~~k~~gv--~~~g~~i~kGa~~~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~v~~~~~~lG~i~l~Dp~R 443 (673)
T PRK14010 366 EYIPFTAETRMSGV--KFTTREVYKGAPNSMVKRVKEAGGHIPVDLDALVKGVSKKGGTPLVVLEDNEILGVIYLKDVIK 443 (673)
T ss_pred ceeccccccceeEE--EECCEEEEECCHHHHHHHhhhcCCCCchHHHHHHHHHHhCCCeEEEEEECCEEEEEEEeecCCc
Confidence 11233322 23444 35678899999988742 2333455566666778888999999999999999999999999
Q ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCC
Q 039776 728 PGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAAD 807 (922)
Q Consensus 728 ~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~ 807 (922)
||++++|++||++|++++|+|||+..+|.++|+++||+.++++++||||.++|+.+|++|+.|+|+|||+||+|||++||
T Consensus 444 ~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa~AD 523 (673)
T PRK14010 444 DGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKGHIVAMTGDGTNDAPALAEAN 523 (673)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCCCEEEEECCChhhHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039776 808 VGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLL 862 (922)
Q Consensus 808 vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~ 862 (922)
||||||+|+|.|+++||+|++++||..|++++++||++|.|+++.+.|.+.-|+.
T Consensus 524 VGIAMgsGTdvAkeAADiVLldd~ls~Iv~av~~gR~i~~n~~~~~~f~~~~~~~ 578 (673)
T PRK14010 524 VGLAMNSGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDIA 578 (673)
T ss_pred EEEEeCCCCHHHHHhCCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHheeeeccHH
Confidence 9999999999999999999999999999999999999999999999999988874
No 11
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=4.8e-83 Score=775.12 Aligned_cols=540 Identities=21% Similarity=0.264 Sum_probs=438.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCC---CCcceeEEecCCCcCCCCEEEEcCCCee
Q 039776 343 FFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEE---GNVISEEEIDSRLIQRNDVIKIIPGAKV 419 (922)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~---g~~~~~~~i~~~~l~~GDiv~v~~G~~i 419 (922)
|. .+++++++++++.+++.++++|+++.+++|.++.+.+++|+|++.+ |+ +++|++++|+|||+|.+++||+|
T Consensus 122 ~~-~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~---~~~I~~~eLvpGDiV~l~~Gd~I 197 (902)
T PRK10517 122 LF-AAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENG---WLEIPIDQLVPGDIIKLAAGDMI 197 (902)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCe---EEEEEHHhCCCCCEEEECCCCEE
Confidence 44 3466778889999999999999999999999999999999983211 54 78999999999999999999999
Q ss_pred eceEEEEecc-eeeecccccCCCcccccCCCC-------------eeecCcccccceEEEEEEEecCccHHHHHHHHHHH
Q 039776 420 ASDGYVLWGK-SYVNESMITGEAWPVAKREGD-------------TVTGGTLNENGVLHIKATRVGSESALAQIVRLVES 485 (922)
Q Consensus 420 PaD~~vl~g~-~~vdes~lTGEs~pv~k~~g~-------------~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~ 485 (922)
||||+|++|+ +.||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|.+|+|.+++++
T Consensus 198 PaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~~ 277 (902)
T PRK10517 198 PADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVSE 277 (902)
T ss_pred eeeEEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhhc
Confidence 9999999997 599999999999999999875 69999999999999999999999999999999999
Q ss_pred hhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHH
Q 039776 486 AQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPT 565 (922)
Q Consensus 486 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~ 565 (922)
+..+++|+|+.++++++++.+++++++.+.++++++.+ .+|..++.+++++++++|||+||+++++
T Consensus 278 ~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~--------------~~~~~~l~~alsv~V~~~Pe~LP~~vt~ 343 (902)
T PRK10517 278 QDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTK--------------GDWWEAALFALSVAVGLTPEMLPMIVTS 343 (902)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc--------------CCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 88899999999999999998888888777666554332 1466788899999999999999999999
Q ss_pred HHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccCHHHHHHHHHHH------------H
Q 039776 566 AVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAAT------------E 633 (922)
Q Consensus 566 ~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~------------e 633 (922)
+++.+..+|+|+|+++|+++++|++|++|+||||||||||+|+|.|.++....+...++++.++... .
T Consensus 344 ~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~~~p~d~ 423 (902)
T PRK10517 344 TLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLDT 423 (902)
T ss_pred HHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999987554444456666654421 2
Q ss_pred HHHHHHHhcccccCCCCCcCc--cceeeeecCcEEEEEc---C--eEEEEechhhhhhCC-------C--CCCcc----h
Q 039776 634 AIIEYANKFREDEENPMWPEA--QDFVSITGHGVKAIVR---N--KEIMVGNKSLMLDNN-------I--DIPPD----T 693 (922)
Q Consensus 634 ai~~~~~~~~~~~~~~~~~~~--~~~~~~~g~gi~~~~~---~--~~~~~g~~~~~~~~~-------~--~~~~~----~ 693 (922)
|+++++............... .+|.+. .+++...++ + ..+..|+++.+.+.+ . +.+++ .
T Consensus 424 All~~a~~~~~~~~~~~~~~~~~~pFds~-~k~msvvv~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~~~~i 502 (902)
T PRK10517 424 AVLEGVDEESARSLASRWQKIDEIPFDFE-RRRMSVVVAENTEHHQLICKGALEEILNVCSQVRHNGEIVPLDDIMLRRI 502 (902)
T ss_pred HHHHHHHhcchhhhhhcCceEEEeeeCCC-cceEEEEEEECCCeEEEEEeCchHHHHHhchhhhcCCCeecCCHHHHHHH
Confidence 666665432110000011111 122222 344554443 1 235568877654321 1 22222 2
Q ss_pred HHHHHHHhccCceEEEEEE----------------CCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Q 039776 694 EEMLTETEGMAQTEILVSV----------------DGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKS 757 (922)
Q Consensus 694 ~~~~~~~~~~~~~~l~v~~----------------~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ 757 (922)
.+..+.+..+|.+++.+++ |++++|+++++||+||+++++|++|+++|++++|+|||+..+|.+
T Consensus 503 ~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~ 582 (902)
T PRK10517 503 KRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGVTVKILTGDSELVAAK 582 (902)
T ss_pred HHHHHHHHhcCCEEEEEEEecCCccccccccccccCceeeehHhhhCcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence 2334567788999999985 568999999999999999999999999999999999999999999
Q ss_pred HHHHhCCc-------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEe
Q 039776 758 IASEVGIE-------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAI 812 (922)
Q Consensus 758 ia~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~ 812 (922)
+|+++||+ .+|+|++|+||.++|+.+|++|+.|+|+|||+||+|||++|||||||
T Consensus 583 IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAm 662 (902)
T PRK10517 583 VCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISV 662 (902)
T ss_pred HHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEe
Confidence 99999997 79999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccCCCCCCCHHHHHHHhhcc
Q 039776 813 GAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAAG-AIFPTTRFRLPPWIAGAAMATS 891 (922)
Q Consensus 813 ~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~~-~~~~~~g~~l~p~~a~~~~~~s 891 (922)
|+|+|.|+++||+|+++++|..++.++++||++++|+++++.|.+..|+..+...+. .++ .+ ..|+.+.-+....
T Consensus 663 g~gtdvAkeaADiVLldd~~~~I~~ai~~gR~i~~nI~k~i~~~ls~n~~~v~~~~~~~~~--~~--~~pl~~~qiL~in 738 (902)
T PRK10517 663 DGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAF--LP--FLPMLPLHLLIQN 738 (902)
T ss_pred CCcCHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hh--hhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999966544432 111 11 1244444444443
Q ss_pred hhhhhhhhhccccCC
Q 039776 892 SVSVVCSSLLLKNYK 906 (922)
Q Consensus 892 s~~v~~~sl~l~~~~ 906 (922)
-+.- +.++.|...+
T Consensus 739 l~~D-~~~~al~~d~ 752 (902)
T PRK10517 739 LLYD-VSQVAIPFDN 752 (902)
T ss_pred HHHH-HhHHhhcCCC
Confidence 3444 3366665543
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=3.1e-82 Score=769.31 Aligned_cols=537 Identities=22% Similarity=0.286 Sum_probs=437.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEee---cCCCCcceeEEecCCCcCCCCEEEEcCCCeeece
Q 039776 346 TSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTM---DEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASD 422 (922)
Q Consensus 346 ~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~---~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD 422 (922)
.+++++++++++.+++.++++|+++.++.|.++.+.+++|+|. +.||+ +++|++++|+|||+|.+++||+||||
T Consensus 90 ~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg~---~~~I~~~eLv~GDiV~l~~Gd~VPaD 166 (867)
T TIGR01524 90 ATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNGS---MDEVPIDALVPGDLIELAAGDIIPAD 166 (867)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCCe---EEEEEhhcCCCCCEEEECCCCEEccc
Confidence 3466777788899999999999999999999999999999982 11465 78999999999999999999999999
Q ss_pred EEEEecc-eeeecccccCCCcccccCCCC-------------eeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhc
Q 039776 423 GYVLWGK-SYVNESMITGEAWPVAKREGD-------------TVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQM 488 (922)
Q Consensus 423 ~~vl~g~-~~vdes~lTGEs~pv~k~~g~-------------~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 488 (922)
|+|++|+ +.||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|.+||+.+++++ ..
T Consensus 167 g~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~-~~ 245 (867)
T TIGR01524 167 ARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATE-RR 245 (867)
T ss_pred EEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC-CC
Confidence 9999997 599999999999999999875 69999999999999999999999999999999988 66
Q ss_pred cCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHH
Q 039776 489 AKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVM 568 (922)
Q Consensus 489 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~ 568 (922)
+++|+|+.++++++++.+++++++++.+++|++... +|..++.+++++++++|||+||+++|++++
T Consensus 246 ~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~al~l~v~~iP~~Lp~~vt~~la 311 (867)
T TIGR01524 246 GQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMKG--------------DWLEAFLFALAVAVGLTPEMLPMIVSSNLA 311 (867)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhcC--------------CHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 789999999999999999888888777766544321 466788899999999999999999999999
Q ss_pred HHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccCHHHHHHHHHHH------------HHHH
Q 039776 569 VGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAAT------------EAII 636 (922)
Q Consensus 569 ~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~------------eai~ 636 (922)
.+..+|+|+|+++|+++++|+||++|+||||||||||+|+|.|.++...++...++++.+++.. .|++
T Consensus 312 ~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~~~p~~~Al~ 391 (867)
T TIGR01524 312 KGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGWKNVLDHAVL 391 (867)
T ss_pred HHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999998765555556666655421 1666
Q ss_pred HHHHhcccccCCCCCcC--ccceeeeecCcEEEEEcC-----eEEEEechhhhhhCCC---------CCCc----chHHH
Q 039776 637 EYANKFREDEENPMWPE--AQDFVSITGHGVKAIVRN-----KEIMVGNKSLMLDNNI---------DIPP----DTEEM 696 (922)
Q Consensus 637 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~gi~~~~~~-----~~~~~g~~~~~~~~~~---------~~~~----~~~~~ 696 (922)
+++............+. ..+|.+. ++++...+++ ..+..|+++.+.+.+. +.++ ..++.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~pF~s~-~k~ms~~v~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~~~~i~~~ 470 (867)
T TIGR01524 392 AKLDESAARQTASRWKKVDEIPFDFD-RRRLSVVVENRAEVTRLICKGAVEEMLTVCTHKRFGGAVVTLSESEKSELQDM 470 (867)
T ss_pred HHHHhhchhhHhhcCceEEEeccCCC-cCEEEEEEEcCCceEEEEEeCcHHHHHHhchhhhcCCceecCCHHHHHHHHHH
Confidence 66543210000001111 1122222 4566666543 2356788877644221 1222 22344
Q ss_pred HHHHhccCceEEEEEE----------------CCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Q 039776 697 LTETEGMAQTEILVSV----------------DGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIAS 760 (922)
Q Consensus 697 ~~~~~~~~~~~l~v~~----------------~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~ 760 (922)
.+.+.++|.+++++++ |.+++|+++++||+||+++++|++|+++|++++|+|||+..+|.++|+
T Consensus 471 ~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~ 550 (867)
T TIGR01524 471 TAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQ 550 (867)
T ss_pred HHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 5567888999999986 238999999999999999999999999999999999999999999999
Q ss_pred HhCCc-------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCC
Q 039776 761 EVGIE-------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAG 815 (922)
Q Consensus 761 ~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~ 815 (922)
++||. .+|+|++|+||.++|+.+|++|+.|+|+|||.||+|||++||||||||+|
T Consensus 551 ~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg~g 630 (867)
T TIGR01524 551 EVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVDTA 630 (867)
T ss_pred HcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeCCc
Confidence 99997 89999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCCCHHHHHHHhhcchhh
Q 039776 816 TDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAA-GAIFPTTRFRLPPWIAGAAMATSSVS 894 (922)
Q Consensus 816 ~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~-~~~~~~~g~~l~p~~a~~~~~~ss~~ 894 (922)
+|.++++||+|+++++|+.++.++++||++++|+++|+.|.+..|+..+...+ +.++ .+ ..|+.+.-+....-+.
T Consensus 631 tdvAk~aADiVLldd~~~~I~~ai~~gR~i~~ni~k~i~~~ls~n~~~~~~~~~~~~~--~~--~~pl~~~qil~inl~~ 706 (867)
T TIGR01524 631 ADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSNFGNVFSVLVASAF--IP--FLPMLSLHLLIQNLLY 706 (867)
T ss_pred cHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hh--hhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987776544332 1111 11 1244444444444344
Q ss_pred hhhhhhccccCC
Q 039776 895 VVCSSLLLKNYK 906 (922)
Q Consensus 895 v~~~sl~l~~~~ 906 (922)
- +-++.|...+
T Consensus 707 d-~~~~al~~~~ 717 (867)
T TIGR01524 707 D-FSQLTLPWDK 717 (867)
T ss_pred H-HHHHhhcCCC
Confidence 4 3566665543
No 13
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=3.6e-81 Score=722.39 Aligned_cols=498 Identities=27% Similarity=0.399 Sum_probs=421.6
Q ss_pred chhhHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC-eEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCe
Q 039776 342 DFFETS--SMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPE-AATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAK 418 (922)
Q Consensus 342 ~~~~~~--~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~-~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~ 418 (922)
.||+.. ..+++.++++.++|.++++|+++++++|.++.|+ .++++|. ||+ +++|++++|++||+|+|++||+
T Consensus 63 ~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~--dg~---~~~V~~~~L~~GDiV~V~~Gd~ 137 (675)
T TIGR01497 63 ALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLRD--DGA---IDKVPADQLKKGDIVLVEAGDV 137 (675)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEee--CCE---EEEEEHHHCCCCCEEEECCCCE
Confidence 466654 3344447899999999999999999999998877 4878752 565 7899999999999999999999
Q ss_pred eeceEEEEecceeeecccccCCCcccccCCCCe---eecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHH
Q 039776 419 VASDGYVLWGKSYVNESMITGEAWPVAKREGDT---VTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQK 495 (922)
Q Consensus 419 iPaD~~vl~g~~~vdes~lTGEs~pv~k~~g~~---v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~ 495 (922)
||+||+|++|.+.||||+|||||.||.|++|+. ||+||.+.+|.++++|+++|.+|+++|+.+++++++.+++|+|.
T Consensus 138 IPaDG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~ 217 (675)
T TIGR01497 138 IPCDGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEI 217 (675)
T ss_pred EeeeEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHH
Confidence 999999999999999999999999999999985 99999999999999999999999999999999999999999997
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHH
Q 039776 496 FADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGA 575 (922)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~ 575 (922)
..+.+..++.. ++++.. +.+|.+. .+. ....++..++++++++|||+++...|.....++.+++
T Consensus 218 ~l~~l~~~l~~-v~li~~--~~~~~~~-~~~------------~~~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~a 281 (675)
T TIGR01497 218 ALTILLIALTL-VFLLVT--ATLWPFA-AYG------------GNAISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVL 281 (675)
T ss_pred HHHHHHHHHHH-HHHHHH--HHHHHHH-Hhc------------ChhHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHH
Confidence 77766654433 222222 2223221 110 1123566778999999999999888888889999999
Q ss_pred HcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccCHHHHHHHHHHHH---------HHHHHHHhccccc
Q 039776 576 SQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAATE---------AIIEYANKFREDE 646 (922)
Q Consensus 576 ~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~e---------ai~~~~~~~~~~~ 646 (922)
|+|+++|+++++|++|++|+||||||||||+|+|++.++.+.++.+.+++++.++.++ |+++++++.+...
T Consensus 282 r~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a~~~~~~~ 361 (675)
T TIGR01497 282 GFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKSIVILAKQLGIRE 361 (675)
T ss_pred HCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999998777777788888776665 8888887643222
Q ss_pred CCCCCcCccceeeeecC-cEEEE--EcCeEEEEechhhh----hhCCCCCCcchHHHHHHHhccCceEEEEEECCEEEEE
Q 039776 647 ENPMWPEAQDFVSITGH-GVKAI--VRNKEIMVGNKSLM----LDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGV 719 (922)
Q Consensus 647 ~~~~~~~~~~~~~~~g~-gi~~~--~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~G~ 719 (922)
.... ....++...++. ++.+. .+++.+.+|+++.+ ...+...+.+.++..+++.++|.+++++++|++++|+
T Consensus 362 ~~~~-~~~~~~~pf~~~~~~sg~~~~~g~~~~kGa~e~i~~~~~~~g~~~~~~~~~~~~~~a~~G~r~l~va~~~~~lG~ 440 (675)
T TIGR01497 362 DDVQ-SLHATFVEFTAQTRMSGINLDNGRMIRKGAVDAIKRHVEANGGHIPTDLDQAVDQVARQGGTPLVVCEDNRIYGV 440 (675)
T ss_pred cccc-cccceEEEEcCCCcEEEEEEeCCeEEEECCHHHHHHHHHhcCCCCcHHHHHHHHHHHhCCCeEEEEEECCEEEEE
Confidence 1111 112234444444 45554 36788999998654 3455556666777778888999999999999999999
Q ss_pred EEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHcCCeEEEEcCCccc
Q 039776 720 LSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGIND 799 (922)
Q Consensus 720 ~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD 799 (922)
++++|++|||+++++++||++|++++|+|||+..+|.++|+++||++++++++|++|.++++.+|++|+.|+|+|||.||
T Consensus 441 i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~~PedK~~~v~~lq~~g~~VamvGDG~ND 520 (675)
T TIGR01497 441 IYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEATPEDKIALIRQEQAEGKLVAMTGDGTND 520 (675)
T ss_pred EEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCCCHHHHHHHHHHHHHcCCeEEEECCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039776 800 SPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNL 861 (922)
Q Consensus 800 ~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~ 861 (922)
+|||++|||||+|++|++.++++||++++++|++.+.+++++||+++-+......|++.-++
T Consensus 521 apAL~~AdvGiAm~~gt~~akeaadivLldd~~s~Iv~av~~GR~~~~t~~~~~t~~~~~~~ 582 (675)
T TIGR01497 521 APALAQADVGVAMNSGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTFSIANDV 582 (675)
T ss_pred HHHHHhCCEeEEeCCCCHHHHHhCCEEECCCCHHHHHHHHHHHHHHHHHHHHHheeeecccH
Confidence 99999999999999999999999999999999999999999999999887777777765433
No 14
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=1.1e-81 Score=764.80 Aligned_cols=503 Identities=23% Similarity=0.307 Sum_probs=417.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecC---CCCcceeEEecCCCcCCCCEEEEcCCCe
Q 039776 342 DFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDE---EGNVISEEEIDSRLIQRNDVIKIIPGAK 418 (922)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~---~g~~~~~~~i~~~~l~~GDiv~v~~G~~ 418 (922)
+|.+ +++++++++++.+++.++++|+++.+++|.++.+.+++|+|+++ +|+ +++|++++|+|||+|.+++||+
T Consensus 110 ~~~~-~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~---~~~I~~~eLv~GDiV~l~~Gd~ 185 (903)
T PRK15122 110 DLTG-VIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPV---RREIPMRELVPGDIVHLSAGDM 185 (903)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCe---EEEEEHHHCCCCCEEEECCCCE
Confidence 3544 46677788889999999999999999999999999999998321 144 7899999999999999999999
Q ss_pred eeceEEEEecc-eeeecccccCCCcccccCC-----------------------CCeeecCcccccceEEEEEEEecCcc
Q 039776 419 VASDGYVLWGK-SYVNESMITGEAWPVAKRE-----------------------GDTVTGGTLNENGVLHIKATRVGSES 474 (922)
Q Consensus 419 iPaD~~vl~g~-~~vdes~lTGEs~pv~k~~-----------------------g~~v~~Gs~~~~g~~~~~v~~~g~~t 474 (922)
|||||+|++|+ ..||||+|||||.|+.|.+ +|.+|+||.+.+|.++++|++||.+|
T Consensus 186 IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T 265 (903)
T PRK15122 186 IPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRT 265 (903)
T ss_pred EeeeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEecccc
Confidence 99999999997 5899999999999999975 36899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeee
Q 039776 475 ALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIA 554 (922)
Q Consensus 475 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~ 554 (922)
.+|+|.+++++ ...++|+|+.++++.+++..+.+.++.+.+++.++.. .+|..++.+++++++++
T Consensus 266 ~~gkI~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~~--------------~~~~~~l~~aisl~V~~ 330 (903)
T PRK15122 266 YFGSLAKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFTK--------------GDWLEALLFALAVAVGL 330 (903)
T ss_pred HhhHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--------------CCHHHHHHHHHHHHHHH
Confidence 99999999987 5567899999999998877666555544443322211 14677888999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccCHHHHHHHHHH---
Q 039776 555 CPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAA--- 631 (922)
Q Consensus 555 ~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~--- 631 (922)
|||+||+++|++++.+..+|+++|+++|+++++|+||++|+||||||||||+|+|.|.++...++...++++.+++.
T Consensus 331 ~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~a~l~s~ 410 (903)
T PRK15122 331 TPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQLAWLNSF 410 (903)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999876655555566665531
Q ss_pred ---------HHHHHHHHHhcccccCCCCCcCccceeeeecCcEE----EEE---cCeEEE--EechhhhhhC-------C
Q 039776 632 ---------TEAIIEYANKFREDEENPMWPEAQDFVSITGHGVK----AIV---RNKEIM--VGNKSLMLDN-------N 686 (922)
Q Consensus 632 ---------~eai~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~----~~~---~~~~~~--~g~~~~~~~~-------~ 686 (922)
..|+++++.+.+.... ......+..+++.+.+ ..+ +++.+. .|+++.+.+. +
T Consensus 411 ~~~~~~~p~e~All~~a~~~~~~~~---~~~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KGa~e~il~~c~~~~~~~ 487 (903)
T PRK15122 411 HQSGMKNLMDQAVVAFAEGNPEIVK---PAGYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKGAVEEMLAVATHVRDGD 487 (903)
T ss_pred CCCCCCChHHHHHHHHHHHcCchhh---hhcCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECCcHHHHHHhchhhhcCC
Confidence 1277777765432110 0111223333333322 222 334433 4888765332 2
Q ss_pred C--CCCcc----hHHHHHHHhccCceEEEEEE------------------CCEEEEEEEcCCCcchhHHHHHHHHHHCCC
Q 039776 687 I--DIPPD----TEEMLTETEGMAQTEILVSV------------------DGELTGVLSISDPLKPGAHGVISILKSMQI 742 (922)
Q Consensus 687 ~--~~~~~----~~~~~~~~~~~~~~~l~v~~------------------~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi 742 (922)
. +.+++ ..+..+.+..+|.+++++++ |++++|+++++||+||+++++|++||++|+
T Consensus 488 ~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~a~~aI~~l~~aGI 567 (903)
T PRK15122 488 TVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRAQYSTADERDLVIRGFLTFLDPPKESAAPAIAALRENGV 567 (903)
T ss_pred CeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCccccccccccccccCcEEEEEEeccCccHHHHHHHHHHHHHCCC
Confidence 1 22322 23345567888999999885 348999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHhCCc-------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCc
Q 039776 743 RSILVTGDNWGTAKSIASEVGIE-------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGI 797 (922)
Q Consensus 743 ~~~~~tgd~~~~a~~ia~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ 797 (922)
+++|+|||+..+|.++|+++||. .+|+|++|+||.++|+.||++|+.|+|+|||+
T Consensus 568 ~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVamtGDGv 647 (903)
T PRK15122 568 AVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGFLGDGI 647 (903)
T ss_pred eEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 99999999999999999999997 79999999999999999999999999999999
Q ss_pred ccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039776 798 NDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITI 866 (922)
Q Consensus 798 nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~ 866 (922)
||+|||++||||||||+|+|.|+++||+|++++||..++.++++||++++|+++++.|.+..|+..+..
T Consensus 648 NDaPALk~ADVGIAmg~gtdvAkeaADiVLldd~f~~Iv~ai~~gR~i~~nI~k~i~~~ls~n~~~~~~ 716 (903)
T PRK15122 648 NDAPALRDADVGISVDSGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFS 716 (903)
T ss_pred hhHHHHHhCCEEEEeCcccHHHHHhcCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765443
No 15
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=4.1e-80 Score=760.58 Aligned_cols=553 Identities=24% Similarity=0.290 Sum_probs=434.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-cCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeee
Q 039776 342 DFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLD-LAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVA 420 (922)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~-~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iP 420 (922)
.|++. .++++++++.-.+..++++++++.+++|.+ ..+.+++|+| ||+ +++|++++|+|||+|.+++||+||
T Consensus 127 ~~~~~-~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViR---dG~---~~~I~~~~Lv~GDiV~l~~Gd~IP 199 (941)
T TIGR01517 127 GWIEG-VAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIR---GGQ---EQQISIHDIVVGDIVSLSTGDVVP 199 (941)
T ss_pred chHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEE---CCE---EEEEeHHHCCCCCEEEECCCCEec
Confidence 34444 344444455556677777888888888876 4577899998 786 789999999999999999999999
Q ss_pred ceEEEEec-ceeeecccccCCCcccccCCCCe--eecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHH
Q 039776 421 SDGYVLWG-KSYVNESMITGEAWPVAKREGDT--VTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFA 497 (922)
Q Consensus 421 aD~~vl~g-~~~vdes~lTGEs~pv~k~~g~~--v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~ 497 (922)
|||+|++| .+.||||+|||||.|+.|.+|+. +|+||.+.+|.++++|++||.+|.+||+.+++++++ +++|+++.+
T Consensus 200 aD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~ 278 (941)
T TIGR01517 200 ADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKL 278 (941)
T ss_pred ccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHH
Confidence 99999999 79999999999999999998876 999999999999999999999999999999998765 678999999
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCc--ccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHH
Q 039776 498 DRASKYFVPLVIILSFSTWLAWYLAGNFHSYPES--WIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGA 575 (922)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~ 575 (922)
+++++++.+++++++++.+++|++...+...... +......++..++.+++++++++|||+|++++|++++.++.+|+
T Consensus 279 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~ma 358 (941)
T TIGR01517 279 SELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMM 358 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999888888877766432111100000 00001125777889999999999999999999999999999999
Q ss_pred HcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEccccc----------C--HHHHHHHHHHH-----------
Q 039776 576 SQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNM----------V--LRDFYELVAAT----------- 632 (922)
Q Consensus 576 ~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~----------~--~~~~~~~~~~~----------- 632 (922)
++|+++|+++++|+||++|+||||||||||+|+|.+.++...++. . ..+++..+..+
T Consensus 359 k~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~ 438 (941)
T TIGR01517 359 KDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNILVEGISLNSSSEEVVDRG 438 (941)
T ss_pred hCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEecceEecCcccccCCHHHHHHHHHHHHhCCCCccccCCC
Confidence 999999999999999999999999999999999999988653310 0 11112111111
Q ss_pred -----------HHHHHHHHhccccc----CCCCCcCccceeee-ecCcEEEEEcCe---EEEEechhhhhh--------C
Q 039776 633 -----------EAIIEYANKFREDE----ENPMWPEAQDFVSI-TGHGVKAIVRNK---EIMVGNKSLMLD--------N 685 (922)
Q Consensus 633 -----------eai~~~~~~~~~~~----~~~~~~~~~~~~~~-~g~gi~~~~~~~---~~~~g~~~~~~~--------~ 685 (922)
.|++++++..+.+. .........+|.+. .+.++....++. -+..|+++.+.. +
T Consensus 439 ~~~~~~g~p~e~All~~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~msvv~~~~~~~~~~~~KGA~e~il~~c~~~~~~~ 518 (941)
T TIGR01517 439 GKRAFIGSKTECALLGFLLLLGRDYQEVRAEEKVVKIYPFNSERKFMSVVVKHSGGKVREFRKGASEIVLKPCRKRLDSN 518 (941)
T ss_pred CccccCCCccHHHHHHHHHHcCCCHHHHHhhchhccccccCCCCCeEEEEEEeCCCcEEEEEECChHHHHHhhhHHhhcC
Confidence 26666665433211 01111122344432 223333333333 344577655432 2
Q ss_pred CCC--CCc---chHHHHHHHhccCceEEEEEE----------------CCEEEEEEEcCCCcchhHHHHHHHHHHCCCEE
Q 039776 686 NID--IPP---DTEEMLTETEGMAQTEILVSV----------------DGELTGVLSISDPLKPGAHGVISILKSMQIRS 744 (922)
Q Consensus 686 ~~~--~~~---~~~~~~~~~~~~~~~~l~v~~----------------~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~ 744 (922)
+.. .++ +.++..+++.++|.+++.+++ |++++|+++++|++||+++++|++||++|+++
T Consensus 519 g~~~~~~~~~~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~~~aI~~l~~aGI~v 598 (941)
T TIGR01517 519 GEATPISDDKDRCADVIEPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGVREAVQECQRAGITV 598 (941)
T ss_pred CCcccCcHHHHHHHHHHHHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhHHHHHHHHHHCCCEE
Confidence 222 111 234455678889999999875 34899999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHhCCc---------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCc
Q 039776 745 ILVTGDNWGTAKSIASEVGIE---------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGI 797 (922)
Q Consensus 745 ~~~tgd~~~~a~~ia~~~gi~---------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ 797 (922)
+|+|||+..+|.++|+++||. .+|+|++|+||.++|+.+|++|+.|+|+|||.
T Consensus 599 ~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~~iV~~lq~~g~vVam~GDGv 678 (941)
T TIGR01517 599 RMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQLLVLMLKDMGEVVAVTGDGT 678 (941)
T ss_pred EEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 999999999999999999996 69999999999999999999999999999999
Q ss_pred ccHHHHHhCCceEEec-CCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 039776 798 NDSPALVAADVGMAIG-AGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAAGAIFPTTR 876 (922)
Q Consensus 798 nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~~~~~~~~g 876 (922)
||+|||++|||||||| +|+|.|+++||+++++++|+.++.++++||++++|+++|+.|++++|+..+++++.+.+.+ +
T Consensus 679 NDapALk~AdVGIAmg~~gtdvAk~aADivL~dd~f~~I~~~i~~gR~~~~ni~k~i~~~l~~n~~~i~~~~~~~~~~-~ 757 (941)
T TIGR01517 679 NDAPALKLADVGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVNVVAVILTFVGSCIS-S 757 (941)
T ss_pred chHHHHHhCCcceecCCCccHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 9999999999999999 8999999999999999999999999999999999999999999999999988886432221 1
Q ss_pred CCCCHHHHHHHhhcchhhhhhhhhccccC
Q 039776 877 FRLPPWIAGAAMATSSVSVVCSSLLLKNY 905 (922)
Q Consensus 877 ~~l~p~~a~~~~~~ss~~v~~~sl~l~~~ 905 (922)
..|+-+.-+.....+...+.++.|...
T Consensus 758 --~~pl~~~qil~inl~~d~~~al~l~~e 784 (941)
T TIGR01517 758 --TSPLTAVQLLWVNLIMDTLAALALATE 784 (941)
T ss_pred --cccHHHHHHHHHHHHHHHhhHHHHccC
Confidence 235555555555556666667766543
No 16
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=8.2e-80 Score=753.35 Aligned_cols=533 Identities=25% Similarity=0.318 Sum_probs=427.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEecc
Q 039776 350 LISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGK 429 (922)
Q Consensus 350 l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~ 429 (922)
+++++++.-.+..++++|+++.+++|.++.|.+++|+| ||+ +++|+++||+|||+|.+++||+|||||+|++|+
T Consensus 86 i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViR---dg~---~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~ 159 (884)
T TIGR01522 86 ITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLIR---EGK---LEHVLASTLVPGDLVCLSVGDRVPADLRIVEAV 159 (884)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEE---CCE---EEEEEHHHCccCCEEEecCCCEEeeeEEEEEcC
Confidence 33344445566667778899999999999999999998 786 789999999999999999999999999999995
Q ss_pred -eeeecccccCCCcccccCCCC--------------eeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhH
Q 039776 430 -SYVNESMITGEAWPVAKREGD--------------TVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQ 494 (922)
Q Consensus 430 -~~vdes~lTGEs~pv~k~~g~--------------~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~ 494 (922)
+.||||+|||||.|+.|++|+ .+|+||.+.+|.++++|++||.+|.+|++.+++++++..++|+|
T Consensus 160 ~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~lq 239 (884)
T TIGR01522 160 DLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQ 239 (884)
T ss_pred ceEEEcccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcHH
Confidence 899999999999999999874 79999999999999999999999999999999999888899999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHH
Q 039776 495 KFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVG 574 (922)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~ 574 (922)
+.++++++++++++++++++.++++++.+ .++..++.+++++++++|||+||+++|+++..+.++|
T Consensus 240 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ 305 (884)
T TIGR01522 240 KSMDLLGKQLSLVSFGVIGVICLVGWFQG--------------KDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRM 305 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 99999999998877665555444433322 1467788899999999999999999999999999999
Q ss_pred HHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEccccc----------------------------CHHHHH
Q 039776 575 ASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNM----------------------------VLRDFY 626 (922)
Q Consensus 575 ~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~----------------------------~~~~~~ 626 (922)
+++|+++|+++++|+||++|+||||||||||+|+|.|.++...++. ...+++
T Consensus 306 ak~~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 385 (884)
T TIGR01522 306 SKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRIL 385 (884)
T ss_pred hhcCCcccchHHHHhccCccEEEecCccccccCeEEEEEEEecCceEeeccCCccCCCCcccccccccccccCHHHHHHH
Confidence 9999999999999999999999999999999999999998653321 012333
Q ss_pred HHHHHH------------------HHHHHHHHhcccccCCCCCcCc--cceeeeecCcEEEE--E--cCe--EEEEechh
Q 039776 627 ELVAAT------------------EAIIEYANKFREDEENPMWPEA--QDFVSITGHGVKAI--V--RNK--EIMVGNKS 680 (922)
Q Consensus 627 ~~~~~~------------------eai~~~~~~~~~~~~~~~~~~~--~~~~~~~g~gi~~~--~--~~~--~~~~g~~~ 680 (922)
..++.+ .|++++++..+.+......+.. .+|.+.. +.+... . +++ .+..|+++
T Consensus 386 ~~~~l~~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~~~~~~~~~~~~pF~s~~-k~m~v~~~~~~~~~~~~~~KGape 464 (884)
T TIGR01522 386 EAGNLCNNAKFRNEADTLLGNPTDVALIELLMKFGLDDLRETYIRVAEVPFSSER-KWMAVKCVHRQDRSEMCFMKGAYE 464 (884)
T ss_pred HHHhhhCCCeecCCCCCcCCChHHHHHHHHHHHcCcHhHHhhCcEEeEeCCCCCC-CeEEEEEEEcCCCeEEEEEeCChH
Confidence 333211 1777776654321100011111 1222111 111111 1 222 33457765
Q ss_pred hhhh--------CCC--CCCcc----hHHHHHHHhccCceEEEEEECC-----EEEEEEEcCCCcchhHHHHHHHHHHCC
Q 039776 681 LMLD--------NNI--DIPPD----TEEMLTETEGMAQTEILVSVDG-----ELTGVLSISDPLKPGAHGVISILKSMQ 741 (922)
Q Consensus 681 ~~~~--------~~~--~~~~~----~~~~~~~~~~~~~~~l~v~~~~-----~~~G~~~~~d~~r~~~~~~i~~l~~~g 741 (922)
.+.. .+. +++++ .++..+.+.++|.++++++++. +++|+++++|++||+++++|++|+++|
T Consensus 465 ~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~~~i~~l~~~G 544 (884)
T TIGR01522 465 QVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKEAVTTLITGG 544 (884)
T ss_pred HHHHhhhhhhhcCCCeeeCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHHHHHHHHHHCC
Confidence 4432 122 12222 2344556788999999999865 899999999999999999999999999
Q ss_pred CEEEEEcCCCHHHHHHHHHHhCCc---------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEc
Q 039776 742 IRSILVTGDNWGTAKSIASEVGIE---------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVG 794 (922)
Q Consensus 742 i~~~~~tgd~~~~a~~ia~~~gi~---------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vG 794 (922)
++++|+|||+..+|.++|+++||. .+|+|++|++|.++++.+|++|+.|+|+|
T Consensus 545 i~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvG 624 (884)
T TIGR01522 545 VRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQKRGDVVAMTG 624 (884)
T ss_pred CeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHHHHHHHHHHCCCEEEEEC
Confidence 999999999999999999999996 59999999999999999999999999999
Q ss_pred CCcccHHHHHhCCceEEec-CCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039776 795 DGINDSPALVAADVGMAIG-AGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAAGAIFP 873 (922)
Q Consensus 795 Dg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~~~~~~ 873 (922)
||.||+||+++|||||+|| +|++.++++||+++++++++.++.++++||++++|+++|+.|.++.|+..+.+.+...
T Consensus 625 DGvND~pAl~~AdVGia~g~~g~~va~~aaDivl~dd~~~~i~~~i~~gR~~~~ni~k~i~~~l~~ni~~~~~~~~~~-- 702 (884)
T TIGR01522 625 DGVNDAPALKLADIGVAMGQTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIKNFITFQLSTSVAALSLIALAT-- 702 (884)
T ss_pred CCcccHHHHHhCCeeEecCCCcCHHHHHhcCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--
Confidence 9999999999999999999 6899999999999999999999999999999999999999999999998876654211
Q ss_pred CCCCCCCHHHHHHHhhcchhhhhhhhhccccCC
Q 039776 874 TTRFRLPPWIAGAAMATSSVSVVCSSLLLKNYK 906 (922)
Q Consensus 874 ~~g~~l~p~~a~~~~~~ss~~v~~~sl~l~~~~ 906 (922)
+.+. ..|+.+.-+....-+...+.++.|...+
T Consensus 703 ~~~~-~~pl~~~qiL~inl~~d~~~a~~l~~e~ 734 (884)
T TIGR01522 703 LMGF-PNPLNAMQILWINILMDGPPAQSLGVEP 734 (884)
T ss_pred HHcC-CCchhHHHHHHHHHHHHhhHHHHhccCC
Confidence 1221 3455555555555566666666665533
No 17
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-79 Score=678.18 Aligned_cols=558 Identities=25% Similarity=0.357 Sum_probs=428.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceE
Q 039776 344 FETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDG 423 (922)
Q Consensus 344 ~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~ 423 (922)
|+.+..|.+++++...+..+|++|+.+++++|+++.|+.++|+| +|+ .+.+++++|||||||.++-||+||||.
T Consensus 78 ~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R---~gk---~~~i~A~eLVPGDiV~l~vGDkVPADl 151 (972)
T KOG0202|consen 78 FDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVLR---SGK---LQHILARELVPGDIVELKVGDKIPADL 151 (972)
T ss_pred cccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEEe---cCc---ccceehhccCCCCEEEEecCCccccce
Confidence 33445555555666677777889999999999999999999999 776 789999999999999999999999999
Q ss_pred EEEecc-eeeecccccCCCcccccCC--------------CCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhc
Q 039776 424 YVLWGK-SYVNESMITGEAWPVAKRE--------------GDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQM 488 (922)
Q Consensus 424 ~vl~g~-~~vdes~lTGEs~pv~k~~--------------g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 488 (922)
++++-. ..||||.|||||.|+.|.. .+.+|+||.+..|.++++|+.||.+|.+|++.+.+++.+.
T Consensus 152 Rl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~ 231 (972)
T KOG0202|consen 152 RLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATES 231 (972)
T ss_pred eEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccCC
Confidence 999975 6899999999999999953 3569999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcC--CCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHH
Q 039776 489 AKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFH--SYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTA 566 (922)
Q Consensus 489 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~ 566 (922)
.|+|||+.+|++.+.+..++.++++.+++.. .+.+. .....|+ ..+.+.|..++++.+.++|++||..+++.
T Consensus 232 ~kTPLqk~ld~~G~qLs~~is~i~v~v~~~n--ig~f~~p~~~g~~f----k~~~~~f~IaVsLAVAAIPEGLPaVvT~t 305 (972)
T KOG0202|consen 232 PKTPLQKKLDEFGKQLSKVISFICVGVWLLN--IGHFLDPVHGGSWF----KGALYYFKIAVSLAVAAIPEGLPAVVTTT 305 (972)
T ss_pred CCCcHHHHHHHHHHHHHHHheehhhhHHHhh--hhhhccccccccch----hchhhhhhHHHHHHHHhccCCCcchhhhh
Confidence 9999999999999998866666666554331 22211 0011232 35667788999999999999999999999
Q ss_pred HHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEccccc--------------------------
Q 039776 567 VMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNM-------------------------- 620 (922)
Q Consensus 567 ~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~-------------------------- 620 (922)
++.+.++|+|+++++|...++|+||.+++||+|||||||+|+|.+.++...+..
T Consensus 306 LALG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~~~~~~~~f~~tg~ty~~~g~v~~~~~~ 385 (972)
T KOG0202|consen 306 LALGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDGGTATVDEFNPTGTTYSPEGEVFKDGLY 385 (972)
T ss_pred HHHhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEecccccccccccccCCceeCCCCceEecCcc
Confidence 999999999999999999999999999999999999999999999987543210
Q ss_pred ------CHH---HHHHHHHHHH---------------------HHHHHHHhcccccCC--CC-----------C----c-
Q 039776 621 ------VLR---DFYELVAATE---------------------AIIEYANKFREDEEN--PM-----------W----P- 652 (922)
Q Consensus 621 ------~~~---~~~~~~~~~e---------------------ai~~~~~~~~~~~~~--~~-----------~----~- 652 (922)
..+ ++..+++-+. |+...+++.+..... .. + .
T Consensus 386 ~~~~~~~~~~l~~l~~i~~lCNda~v~~~~~~~~~~~G~pTE~AL~vlaeKm~l~~~~~~~~s~~~~~~c~~~~~~~~~~ 465 (972)
T KOG0202|consen 386 EKDKAGDNDLLQELAEICALCNDATVEYNDADCYEKVGEPTEGALIVLAEKMGLPGTRSTNLSNEEASACNRVYSRLFKK 465 (972)
T ss_pred ccccccccHHHHHHHHHHHhhhhhhhhcCchhhHHhcCCchHHHHHHHHHHcCCCcchhhcccccccccchhHHHHhhhh
Confidence 111 2222332221 555555544321100 00 0 0
Q ss_pred -CccceeeeecCcEEEEEc-------CeEEEEechhhhhhC--------C---CCCCcch----HHHHHHHhccCceEEE
Q 039776 653 -EAQDFVSITGHGVKAIVR-------NKEIMVGNKSLMLDN--------N---IDIPPDT----EEMLTETEGMAQTEIL 709 (922)
Q Consensus 653 -~~~~~~~~~g~gi~~~~~-------~~~~~~g~~~~~~~~--------~---~~~~~~~----~~~~~~~~~~~~~~l~ 709 (922)
...+|.+.. +.+...+. ..-+..|..+-+.+. + .+..+.. .+...++...|.|++.
T Consensus 466 ~~elpFssdr-K~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~~~pLt~~~re~il~~~~~~g~~gLRvLa 544 (972)
T KOG0202|consen 466 IAELPFSSDR-KSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQTKVPLTQASRETILANVYEMGSEGLRVLA 544 (972)
T ss_pred eeEeeccccc-ceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCceeeeCcHHHHHHHHHHHHHHhhccceEEE
Confidence 001122211 22222221 123445665544331 1 2222222 2233456677888888
Q ss_pred EEE------------------------CCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc
Q 039776 710 VSV------------------------DGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE 765 (922)
Q Consensus 710 v~~------------------------~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~ 765 (922)
+|. |++|+|++++.||+|++++++|+.|+++||+|+|+|||+..||.+||+++|+.
T Consensus 545 lA~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~ 624 (972)
T KOG0202|consen 545 LASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIF 624 (972)
T ss_pred EEccCCcccChhhhhhcccccccccccceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 873 57999999999999999999999999999999999999999999999999983
Q ss_pred -------------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEec-
Q 039776 766 -------------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIG- 813 (922)
Q Consensus 766 -------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~- 813 (922)
.+|+|++|++|.++|+.||+.|+.|+|.|||.||+|||+.||+|||||
T Consensus 625 ~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~ 704 (972)
T KOG0202|consen 625 SEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGI 704 (972)
T ss_pred cCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecC
Confidence 689999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCCCHHHHHHHhhcch
Q 039776 814 AGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAA-GAIFPTTRFRLPPWIAGAAMATSS 892 (922)
Q Consensus 814 ~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~-~~~~~~~g~~l~p~~a~~~~~~ss 892 (922)
+|++.+|++||+||.||||+.+..++++||.+|.||++++.|.+..|+..+.+-+ +.. +|+ -.|+.+.-+....-
T Consensus 705 ~GTdVaKeAsDMVL~DDnFstIvaAVEEGr~IynNik~Fir~~lSsnVgev~~I~l~aa---~~~-p~pL~pvQiLWiNl 780 (972)
T KOG0202|consen 705 SGTDVAKEASDMVLADDNFSTIVAAVEEGRAIYNNIKNFIRYLLSSNVGEVVLIFLTAA---FGI-PEPLIPVQILWINL 780 (972)
T ss_pred CccHhhHhhhhcEEecCcHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hCC-CCcccchhhheeee
Confidence 9999999999999999999999999999999999999999999999996553322 111 122 24444445555555
Q ss_pred hhhhhhhhccccCCCCcccccccccccc
Q 039776 893 VSVVCSSLLLKNYKKPKRLNNLEIHEIL 920 (922)
Q Consensus 893 ~~v~~~sl~l~~~~~~~~~~~~~~~~~~ 920 (922)
+.--.-+..|.. .|.-++..+.+|..
T Consensus 781 vtDG~PA~aLG~--ep~D~DiM~kpPR~ 806 (972)
T KOG0202|consen 781 VTDGPPATALGF--EPVDPDIMKKPPRD 806 (972)
T ss_pred eccCCchhhcCC--CCCChhHHhCCCCC
Confidence 555555555543 23334555555543
No 18
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=2.4e-76 Score=728.68 Aligned_cols=539 Identities=22% Similarity=0.293 Sum_probs=437.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceE
Q 039776 344 FETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDG 423 (922)
Q Consensus 344 ~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~ 423 (922)
|..+++++++++++.+++.++++|+++.+++|.++.|.+++|+| ||+ +++|++++|+|||+|++++||+|||||
T Consensus 104 ~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViR---dg~---~~~I~~~~lv~GDiv~l~~Gd~IPaD~ 177 (997)
T TIGR01106 104 LYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIR---DGE---KMSINAEQVVVGDLVEVKGGDRIPADL 177 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEE---CCE---EEEeeHHHCCCCCEEEECCCCEEeeeE
Confidence 33345677777888899999999999999999999999999998 786 789999999999999999999999999
Q ss_pred EEEecc-eeeecccccCCCcccccCCCC----------eeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCCh
Q 039776 424 YVLWGK-SYVNESMITGEAWPVAKREGD----------TVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAP 492 (922)
Q Consensus 424 ~vl~g~-~~vdes~lTGEs~pv~k~~g~----------~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~ 492 (922)
++++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|++||.+|.+|++.+++++.+.+++|
T Consensus 178 ~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~p 257 (997)
T TIGR01106 178 RIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKTP 257 (997)
T ss_pred EEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCCc
Confidence 999996 699999999999999998874 699999999999999999999999999999999888888999
Q ss_pred hHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHH
Q 039776 493 VQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTG 572 (922)
Q Consensus 493 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~ 572 (922)
+++.++++++++++++++++++.+++|++.+. +|..++.+++++++++|||+|+++++++++.+..
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~ 323 (997)
T TIGR01106 258 IAIEIEHFIHIITGVAVFLGVSFFILSLILGY--------------TWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAK 323 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 99999999999999888888877776654431 4567788899999999999999999999999999
Q ss_pred HHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccc--------------c-----CHHHHHHHHHHHH
Q 039776 573 VGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKN--------------M-----VLRDFYELVAATE 633 (922)
Q Consensus 573 ~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~--------------~-----~~~~~~~~~~~~e 633 (922)
+|+++|+++|+++++|+||++++||||||||||+|+|.|.++...+. . ..+.++..++.++
T Consensus 324 ~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alcn 403 (997)
T TIGR01106 324 RMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLCN 403 (997)
T ss_pred HHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998763210 0 0113444333321
Q ss_pred -------------------------HHHHHHHhccccc----CCCCCcCccceeeeecCcEEEEEc----Ce---EEEEe
Q 039776 634 -------------------------AIIEYANKFREDE----ENPMWPEAQDFVSITGHGVKAIVR----NK---EIMVG 677 (922)
Q Consensus 634 -------------------------ai~~~~~~~~~~~----~~~~~~~~~~~~~~~g~gi~~~~~----~~---~~~~g 677 (922)
|+++++.....+. .........+|.+...+....... +. -+..|
T Consensus 404 ~~~~~~~~~~~~~~~~~~~gdp~E~ALl~~a~~~~~~~~~~~~~~~~v~~~pF~s~rK~m~~v~~~~~~~~~~~~~~~KG 483 (997)
T TIGR01106 404 RAVFKAGQENVPILKRAVAGDASESALLKCIELCLGSVMEMRERNPKVVEIPFNSTNKYQLSIHENEDPRDPRHLLVMKG 483 (997)
T ss_pred CCeeccccCCCcccccccCcChHHHHHHHHHHHhCCCHHHHHhhCceeEEeccCCCCceEEEEEeccCCCCceEEEEEeC
Confidence 5555554321110 001111112344433332222221 11 35679
Q ss_pred chhhhhhC-------CC--CCCcc----hHHHHHHHhccCceEEEEEE------------------------CCEEEEEE
Q 039776 678 NKSLMLDN-------NI--DIPPD----TEEMLTETEGMAQTEILVSV------------------------DGELTGVL 720 (922)
Q Consensus 678 ~~~~~~~~-------~~--~~~~~----~~~~~~~~~~~~~~~l~v~~------------------------~~~~~G~~ 720 (922)
+++.+.+. +. +.+++ .++..+++.++|.|++.+++ |.+++|++
T Consensus 484 Ape~Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~GlRvla~A~k~l~~~~~~~~~~~~~~~~~~~e~~L~flGli 563 (997)
T TIGR01106 484 APERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQFPEGFQFDTDDVNFPTDNLCFVGLI 563 (997)
T ss_pred ChHHHHHHhhHHhcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEEeecCcccccccccccchhhhccccCcEEEEEE
Confidence 98766442 22 22222 33445668888999987763 44699999
Q ss_pred EcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc-----------------------------------
Q 039776 721 SISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE----------------------------------- 765 (922)
Q Consensus 721 ~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~----------------------------------- 765 (922)
+++||+||+++++|++|+++|++++|+|||+..+|.++|+++|+.
T Consensus 564 ~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~ 643 (997)
T TIGR01106 564 SMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSD 643 (997)
T ss_pred eccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHH
Confidence 999999999999999999999999999999999999999999982
Q ss_pred ------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEec-CCcHHHHHhcCEE
Q 039776 766 ------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIG-AGTDIAIEAADIV 826 (922)
Q Consensus 766 ------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~v 826 (922)
.+|+|++|+||.++|+.+|+.|+.|+|+|||.||+|||++|||||+|| +|++.++++||++
T Consensus 644 l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G~~vak~aADiv 723 (997)
T TIGR01106 644 LKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMI 723 (997)
T ss_pred hhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCcccHHHHHhhceE
Confidence 189999999999999999999999999999999999999999999999 6999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhhcchhhhhhhhhccccC
Q 039776 827 LMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAAGAIFPTTRFRLPPWIAGAAMATSSVSVVCSSLLLKNY 905 (922)
Q Consensus 827 l~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~~~~~~~~g~~l~p~~a~~~~~~ss~~v~~~sl~l~~~ 905 (922)
+++++|..++.++++||+++.|+++++.|.++.|+..+.+.+... +.+. ..|+.+.-++...-+...+-++.|...
T Consensus 724 L~dd~f~~Iv~ai~~GR~i~~ni~k~i~~~l~~ni~~~~~~~~~~--~~~~-~~pl~~~qlL~inli~d~lp~~al~~e 799 (997)
T TIGR01106 724 LLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFI--IANI-PLPLGTITILCIDLGTDMVPAISLAYE 799 (997)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHcC-cchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999998766554222 1232 235555555555556666666666553
No 19
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-78 Score=672.43 Aligned_cols=559 Identities=23% Similarity=0.311 Sum_probs=446.7
Q ss_pred CcchhhHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCC
Q 039776 340 GKDFFETSSMLISFIL--LGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGA 417 (922)
Q Consensus 340 ~~~~~~~~~~l~~~~~--~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~ 417 (922)
.++|++.+++++.+++ +-..+.+|++.++-+.+++ .-...+..|+| ||+ .++|++.||++|||+.++.||
T Consensus 179 ~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~--~k~~~k~~ViR---~G~---r~~isI~diVVGDIv~lk~GD 250 (1034)
T KOG0204|consen 179 EDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQK--EKRNIKFQVIR---GGR---RQQISIYDLVVGDIVQLKIGD 250 (1034)
T ss_pred CcccccchhheeeEEEEEEEeecchhHHhhhhhhhhh--hhhceEEEEEE---CCE---EEEEEEeeeeeccEEEeecCC
Confidence 3467777776655432 3344455544444333442 23456888998 787 789999999999999999999
Q ss_pred eeeceEEEEecc-eeeecccccCCCcccccCC--CCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhH
Q 039776 418 KVASDGYVLWGK-SYVNESMITGEAWPVAKRE--GDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQ 494 (922)
Q Consensus 418 ~iPaD~~vl~g~-~~vdes~lTGEs~pv~k~~--g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~ 494 (922)
.+||||++++|+ +.+|||++||||.++.|.+ ..++++||.+.+|.+++.||.+|.+|..|+++..+......++|+|
T Consensus 251 qvPADGvli~gn~L~iDESSlTGESd~v~k~~~~dPfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ 330 (1034)
T KOG0204|consen 251 QVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKDPFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPLQ 330 (1034)
T ss_pred ccccceEEEeccceeEecccccCCCcceeccCCCCCeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcHH
Confidence 999999999996 7899999999999999987 4579999999999999999999999999999999998888999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCC------CcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHH
Q 039776 495 KFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYP------ESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVM 568 (922)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~ 568 (922)
-.+++++..+..+.++.+.+++++.........+. ..|.+.....|...|..+++++++|+|++||+|++++++
T Consensus 331 ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~~~~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTLsLA 410 (1034)
T KOG0204|consen 331 VKLNGLATQIGKIGLLFAALTFIVLVIRFFIGKTKIEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTLSLA 410 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHHHHHH
Confidence 99999998888777777777766543332222111 233344456777888899999999999999999999999
Q ss_pred HHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccC----------HHHHHHHH-HHH-----
Q 039776 569 VGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMV----------LRDFYELV-AAT----- 632 (922)
Q Consensus 569 ~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~----------~~~~~~~~-~~~----- 632 (922)
+++++|.+++.++|..+++|++|..++||+|||||||+|+|.|.+.+..++.. ...+..+. .+.
T Consensus 411 ys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtVV~~~~~~~~~k~~~~~~~~l~~~~~~ll~~gI~~Nt~ 490 (1034)
T KOG0204|consen 411 YSMKKMMKDNNLVRHLDACETMGSATAICSDKTGTLTTNRMTVVQSYIGSEHYKVNSPKSSNLPPSLLDLLLQGIAQNTT 490 (1034)
T ss_pred HHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCceEeeeEEEEeeeeccccccccCcccccCCHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999865432111 11122211 110
Q ss_pred --------------------H-HHHHHHHhcccccCCC----CCcCccceeeeecCcEEEEE--cCe--EEEEechhhhh
Q 039776 633 --------------------E-AIIEYANKFREDEENP----MWPEAQDFVSITGHGVKAIV--RNK--EIMVGNKSLML 683 (922)
Q Consensus 633 --------------------e-ai~~~~~~~~~~~~~~----~~~~~~~~~~~~g~gi~~~~--~~~--~~~~g~~~~~~ 683 (922)
| |++.+...++.+.+.. ....+..|.+...++-...- ++. -...|+.+.+.
T Consensus 491 g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~~~~~~R~e~~v~kv~~FNS~kK~~gvvi~~~~~~~y~~~KGAsEiVL 570 (1034)
T KOG0204|consen 491 GSVVKPEKGGEQPEQLGSPTECALLGFGLKLGMDFQDVRPEEKVVKVYPFNSVKKRMGVVIKLPDGGHYVHWKGASEIVL 570 (1034)
T ss_pred CeEEecCCCCcCccccCCHHHHHHHHHHHHhCcchHhhcchhheeEEeccCcccceeeEEEEcCCCCeEEEEcChHHHHH
Confidence 1 8888887776554321 22334456555444322221 222 23446555443
Q ss_pred h--------CCC--CCCc----chHHHHHHHhccCceEEEEEE---------------------CCEEEEEEEcCCCcch
Q 039776 684 D--------NNI--DIPP----DTEEMLTETEGMAQTEILVSV---------------------DGELTGVLSISDPLKP 728 (922)
Q Consensus 684 ~--------~~~--~~~~----~~~~~~~~~~~~~~~~l~v~~---------------------~~~~~G~~~~~d~~r~ 728 (922)
. +|. ++.+ ..++.++.++.++.|++.+++ +.+++|+++++||+||
T Consensus 571 ~~C~~~~~~~g~~~~~~e~~~~~~~~~Ie~mA~~~LRti~lAy~df~~~~~~~~~~~~~~~~~~~lt~laivGIkDPvRP 650 (1034)
T KOG0204|consen 571 KSCEYYIDSNGELVPFNEDDRKSFKDVIEPMASEGLRTICLAYRDFVAGPDEEPSWDNEELPEGGLTLLAIVGIKDPVRP 650 (1034)
T ss_pred HhhhheECCCCCEeeCCHHHHHHHHHHHHHHHHhhhheeeEEeeccccCCCCCCCccccccCCCCeEEEEEeeccCCCCC
Confidence 2 121 1222 244567778899999999886 2379999999999999
Q ss_pred hHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc-----------------------------eEEecCChhhHHHH
Q 039776 729 GAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE-----------------------------TVIAEAKPEQKAEK 779 (922)
Q Consensus 729 ~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~-----------------------------~~~~~~~p~~K~~~ 779 (922)
|++++|+.|+++|+.|.|+||||..||++||.+|||. .+++|-+|.||.-+
T Consensus 651 gV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~DK~lL 730 (1034)
T KOG0204|consen 651 GVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPNDKHLL 730 (1034)
T ss_pred CcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCchHHHH
Confidence 9999999999999999999999999999999999993 68999999999999
Q ss_pred HHHHHHcCCeEEEEcCCcccHHHHHhCCceEEec-CCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039776 780 VEELQASGYTVAMVGDGINDSPALVAADVGMAIG-AGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALG 858 (922)
Q Consensus 780 v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~ 858 (922)
|+.|+++|+.||..|||.||+|||+.||||.||| .|++.|||+||+|+++|||++++++++|||..|.+|+|+++|+++
T Consensus 731 Vk~L~~~g~VVAVTGDGTNDaPALkeADVGlAMGIaGTeVAKEaSDIIi~DDNFssIVk~v~WGR~VY~nIqKFiQFQLT 810 (1034)
T KOG0204|consen 731 VKGLIKQGEVVAVTGDGTNDAPALKEADVGLAMGIAGTEVAKEASDIIILDDNFSSIVKAVKWGRNVYDNIQKFLQFQLT 810 (1034)
T ss_pred HHHHHhcCcEEEEecCCCCCchhhhhcccchhccccchhhhhhhCCeEEEcCchHHHHHHHHhhhHHHHHHHHhheeEEE
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCHHHHHHHhhcchhhhhhhhhccccCCCCc
Q 039776 859 YNLLGITIAAGAIFPTTRFRLPPWIAGAAMATSSVSVVCSSLLLKNYKKPK 909 (922)
Q Consensus 859 ~n~~~i~~a~~~~~~~~g~~l~p~~a~~~~~~ss~~v~~~sl~l~~~~~~~ 909 (922)
.|++++.+++-+-. ..| =.|+-|.-+....-|+.++.||.|...+|.+
T Consensus 811 VNVvAliv~fv~A~-~~~--dsPLtAVQlLWVNLIMDTLgALALATepPt~ 858 (1034)
T KOG0204|consen 811 VNVVALIVNFVSAC-ATG--DSPLTAVQLLWVNLIMDTLGALALATEPPTD 858 (1034)
T ss_pred EEEEeehhhhhhhh-hcC--CccHHHHHHHHHHHHHHHHHHHHhccCCCCh
Confidence 99999988863221 133 4899999999999999999999998765544
No 20
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-77 Score=729.57 Aligned_cols=534 Identities=27% Similarity=0.375 Sum_probs=432.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEecc
Q 039776 350 LISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGK 429 (922)
Q Consensus 350 l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~ 429 (922)
+++++++...+...++.|+.+.+++|+++.+.+++|+| ||+ +++|++++|+|||+|.+++||+||||++|++++
T Consensus 109 I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R---~g~---~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~ 182 (917)
T COG0474 109 ILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVLR---DGK---FVEIPASELVPGDIVLLEAGDVVPADLRLLESS 182 (917)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEe---CCc---EEEecHHHCCCCcEEEECCCCccccceEEEEec
Confidence 33444445555566678888889999998999999999 787 899999999999999999999999999999999
Q ss_pred e-eeecccccCCCcccccCC--------------CCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhH
Q 039776 430 S-YVNESMITGEAWPVAKRE--------------GDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQ 494 (922)
Q Consensus 430 ~-~vdes~lTGEs~pv~k~~--------------g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~ 494 (922)
+ .||||+|||||.|+.|.+ .+.+|+||.+.+|.+.++|++||.+|.+|++.+.+......++|+|
T Consensus 183 ~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l~ 262 (917)
T COG0474 183 DLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQ 262 (917)
T ss_pred CceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCcHH
Confidence 7 999999999999999963 4789999999999999999999999999999999988867899999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHH
Q 039776 495 KFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVG 574 (922)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~ 574 (922)
+.++++.+++..+.++++++.++..++.+. .++..++.+++++++.++|.+||+.++++++.+..+|
T Consensus 263 ~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~m 329 (917)
T COG0474 263 RKLNKLGKFLLVLALVLGALVFVVGLFRGG-------------NGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRM 329 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 999999999999999988888877644322 1267889999999999999999999999999999999
Q ss_pred HHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEccc-ccCHH-----------HHHH---HHH---H-----
Q 039776 575 ASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLK-NMVLR-----------DFYE---LVA---A----- 631 (922)
Q Consensus 575 ~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~-~~~~~-----------~~~~---~~~---~----- 631 (922)
+++++++|+++++|+||++|+||+|||||||+|+|.|.++...+ ....+ +++. +++ .
T Consensus 330 ak~~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~~~~ 409 (917)
T COG0474 330 AKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNGW 409 (917)
T ss_pred HhccchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCCcccccccccccchHHHHHHHHHHhcCcccccccCc
Confidence 99999999999999999999999999999999999999998873 11111 1222 111 0
Q ss_pred ------HH-HHHHHHHhccc--ccCCC--CC--cCccceeeeecCcEEEEEc--C---eEEEEechhhhhhC------CC
Q 039776 632 ------TE-AIIEYANKFRE--DEENP--MW--PEAQDFVSITGHGVKAIVR--N---KEIMVGNKSLMLDN------NI 687 (922)
Q Consensus 632 ------~e-ai~~~~~~~~~--~~~~~--~~--~~~~~~~~~~g~gi~~~~~--~---~~~~~g~~~~~~~~------~~ 687 (922)
.| |+++++.+.+. +.... .. ....+|.+... .+...++ + .-+..|+++.+.+. ..
T Consensus 410 ~~~gdptE~Al~~~a~~~~~~~~~~~~~~~~~~~~~~PFdS~rK-rMsviv~~~~~~~~~~~KGApe~il~~~~~~~~~~ 488 (917)
T COG0474 410 YQAGDPTEGALVEFAEKLGFSLDLSGLEVEYPILAEIPFDSERK-RMSVIVKTDEGKYILFVKGAPEVILERCKSIGELE 488 (917)
T ss_pred eecCCccHHHHHHHHHhcCCcCCHHHHhhhcceeEEecCCCCce-EEEEEEEcCCCcEEEEEcCChHHHHHHhcccCccc
Confidence 01 77777776543 21111 11 12233444332 2344443 1 24567998887542 11
Q ss_pred CCC----cchHHHHHHHhccCceEEEEE-----------------ECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEE
Q 039776 688 DIP----PDTEEMLTETEGMAQTEILVS-----------------VDGELTGVLSISDPLKPGAHGVISILKSMQIRSIL 746 (922)
Q Consensus 688 ~~~----~~~~~~~~~~~~~~~~~l~v~-----------------~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~ 746 (922)
+.+ +..++..+++.++|.|++.++ .|..++|+++++||+|++++++|+.|+++||+++|
T Consensus 489 ~~~~~~~~~~~~~~~~la~~glRvla~A~k~~~~~~~~~~~~~~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~M 568 (917)
T COG0474 489 PLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAEKDDEVDEIESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWM 568 (917)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhhhhccceeehhhhccCCCCccHHHHHHHHHHCCCcEEE
Confidence 222 233444556677776665544 35799999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHhCCc-----------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCc
Q 039776 747 VTGDNWGTAKSIASEVGIE-----------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGI 797 (922)
Q Consensus 747 ~tgd~~~~a~~ia~~~gi~-----------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ 797 (922)
+|||+..||++||+++|+. .+|||++|+||.++|+.+|+.|+.|+|+|||.
T Consensus 569 iTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~qK~~IV~~lq~~g~vVamtGDGv 648 (917)
T COG0474 569 ITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEALQKSGHVVAMTGDGV 648 (917)
T ss_pred ECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 9999999999999999973 58999999999999999999999999999999
Q ss_pred ccHHHHHhCCceEEec-CCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccCC
Q 039776 798 NDSPALVAADVGMAIG-AGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAA-GAIFPTT 875 (922)
Q Consensus 798 nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~-~~~~~~~ 875 (922)
||+|||++|||||+|| +|+|++|++||+++.++++..+..++++||++|.|+++.+.|.+..|+..+.+.+ +.++
T Consensus 649 NDapALk~ADVGIamg~~Gtdaak~Aadivl~dd~~~~i~~av~eGR~~~~ni~k~i~~~l~~n~~~~~~~~~~~~~--- 725 (917)
T COG0474 649 NDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEVLTLLIYSLF--- 725 (917)
T ss_pred hhHHHHHhcCccEEecccHHHHHHhhcceEeecCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999999999999 5999999999999999999999999999999999999999999999998554443 3222
Q ss_pred CCCCCHHHHHHHhhcchhhhhhhhhccccCC
Q 039776 876 RFRLPPWIAGAAMATSSVSVVCSSLLLKNYK 906 (922)
Q Consensus 876 g~~l~p~~a~~~~~~ss~~v~~~sl~l~~~~ 906 (922)
+....|+.+.-++...-+...+.++.|...+
T Consensus 726 ~~~~~p~~~~qll~inll~d~~pa~~L~~~~ 756 (917)
T COG0474 726 NLFFLPLTPLQLLWINLLTDSLPALALGVED 756 (917)
T ss_pred hcccccHHHHHHHHHHHHHhhhhhheeecCC
Confidence 2123466666666666666666666665543
No 21
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=1.1e-75 Score=719.69 Aligned_cols=537 Identities=23% Similarity=0.285 Sum_probs=424.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEE
Q 039776 346 TSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYV 425 (922)
Q Consensus 346 ~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~v 425 (922)
.++++++++++.-.+..++++|+++++++|+++.+.+++|+| ||+ +++|++++|||||+|.+++||+|||||+|
T Consensus 83 ~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViR---dg~---~~~I~a~eLVpGDIv~L~~Gd~VPAD~rL 156 (1053)
T TIGR01523 83 EGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIR---NGK---SDAIDSHDLVPGDICLLKTGDTIPADLRL 156 (1053)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEe---CCe---eeecCHhhCCCCCEEEECCCCEeeccEEE
Confidence 356677788889999999999999999999999999999999 787 78999999999999999999999999999
Q ss_pred Eecc-eeeecccccCCCcccccCCC---------------CeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhc-
Q 039776 426 LWGK-SYVNESMITGEAWPVAKREG---------------DTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQM- 488 (922)
Q Consensus 426 l~g~-~~vdes~lTGEs~pv~k~~g---------------~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~- 488 (922)
+++. ..||||+|||||.||.|.+. +.+|+||.+.+|.++++|++||.+|.+|||.+++.+...
T Consensus 157 i~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~ 236 (1053)
T TIGR01523 157 IETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGL 236 (1053)
T ss_pred EEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhc
Confidence 9985 89999999999999999642 468999999999999999999999999999998865421
Q ss_pred ----------------------------------cCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccC
Q 039776 489 ----------------------------------AKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIP 534 (922)
Q Consensus 489 ----------------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (922)
.++|+|+.++++++++..+.++++++.++...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~~------------ 304 (1053)
T TIGR01523 237 FQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFD------------ 304 (1053)
T ss_pred cccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------
Confidence 2489999999999988777777766655432110
Q ss_pred CccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEE
Q 039776 535 SSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNT 614 (922)
Q Consensus 535 ~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~ 614 (922)
.+...+.++++++++++|++||+.++++++.+.++|+++|+++|++.++|+||++++||+|||||||+|+|.|.++
T Consensus 305 ----~~~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i 380 (1053)
T TIGR01523 305 ----VDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQI 380 (1053)
T ss_pred ----hhHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEE
Confidence 1234566788999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Eccc-----------cc-----------------------------------------C-------HHHHHHHHHHH---
Q 039776 615 KLLK-----------NM-----------------------------------------V-------LRDFYELVAAT--- 632 (922)
Q Consensus 615 ~~~~-----------~~-----------------------------------------~-------~~~~~~~~~~~--- 632 (922)
...+ ++ . ..+++..++.+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lcn~a 460 (1053)
T TIGR01523 381 WIPRFGTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHNEAADQDILKEFKDELKEIDLPEDIDMDLFIKLLETAALANIA 460 (1053)
T ss_pred EEcCCceEEecCCCCCCCCcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHhccCC
Confidence 5321 00 0 01122222211
Q ss_pred ------------------H-HHHHHHHhcccccC------C---------------------CCCcCc--cceeeeecCc
Q 039776 633 ------------------E-AIIEYANKFREDEE------N---------------------PMWPEA--QDFVSITGHG 664 (922)
Q Consensus 633 ------------------e-ai~~~~~~~~~~~~------~---------------------~~~~~~--~~~~~~~g~g 664 (922)
| |++.++.+.+.+.. . ...+.. .+|.+... .
T Consensus 461 ~~~~~~~~~~~~~~GdptE~ALl~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pFds~rK-~ 539 (1053)
T TIGR01523 461 TVFKDDATDCWKAHGDPTEIAIHVFAKKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFIAEFPFDSEIK-R 539 (1053)
T ss_pred eeeccCCCCceeeCcCccHHHHHHHHHHcCCCcccccchhhhhhhccccccccccccccccccccceEEEeccCCCCC-e
Confidence 1 66666655432100 0 000111 12333222 2
Q ss_pred EEEEEc---Ce---EEEEechhhhhhCCC-----------CCCcc----hHHHHHHHhccCceEEEEEE-----------
Q 039776 665 VKAIVR---NK---EIMVGNKSLMLDNNI-----------DIPPD----TEEMLTETEGMAQTEILVSV----------- 712 (922)
Q Consensus 665 i~~~~~---~~---~~~~g~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~~l~v~~----------- 712 (922)
+...++ +. -+..|+++.+.+... +.+++ ..+..+++.++|.|++.+++
T Consensus 540 msvv~~~~~~~~~~~~~KGApe~il~~c~~~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~ 619 (1053)
T TIGR01523 540 MASIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKADNNDD 619 (1053)
T ss_pred EEEEEEeCCCCEEEEEEeCChHHHHHhhhHhhcCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEEEEEECCchhccch
Confidence 233332 22 245798887654221 22222 23445678889999998763
Q ss_pred --------------CCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc-------------
Q 039776 713 --------------DGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE------------- 765 (922)
Q Consensus 713 --------------~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~------------- 765 (922)
|.+++|+++++||+||+++++|++|+++|++++|+|||+..+|.++|+++||.
T Consensus 620 ~~~~~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~ 699 (1053)
T TIGR01523 620 QLKNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMD 699 (1053)
T ss_pred hhhccccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcccccccccccc
Confidence 45799999999999999999999999999999999999999999999999993
Q ss_pred ------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEec-CCcHHHH
Q 039776 766 ------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIG-AGTDIAI 820 (922)
Q Consensus 766 ------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~ 820 (922)
.+|+|++|+||.++|+.+|++|+.|+|+|||.||+|||++|||||||| +|++.++
T Consensus 700 ~~vitG~~l~~l~~~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~vak 779 (1053)
T TIGR01523 700 SMVMTGSQFDALSDEEVDDLKALCLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSDVAK 779 (1053)
T ss_pred ceeeehHHhhhcCHHHHHHHhhcCeEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCccHHHH
Confidence 289999999999999999999999999999999999999999999999 8999999
Q ss_pred HhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-cCCCCCCCHHHHHHHhhcchhhhhhh
Q 039776 821 EAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAA-GAIF-PTTRFRLPPWIAGAAMATSSVSVVCS 898 (922)
Q Consensus 821 ~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~-~~~~-~~~g~~l~p~~a~~~~~~ss~~v~~~ 898 (922)
++||+++.+++|..+..++++||++++|+++++.|.+..|+..+.+.+ +.++ .+.|....|+.+.-+....-+...+-
T Consensus 780 ~aADivl~dd~f~~I~~~i~~gR~~~~ni~k~i~y~l~~ni~~i~~~~~~~~~~~~~g~~~~Pl~~~qiL~inli~d~~p 859 (1053)
T TIGR01523 780 DASDIVLSDDNFASILNAIEEGRRMFDNIMKFVLHLLAENVAEAILLIIGLAFRDENGKSVFPLSPVEILWCIMITSCFP 859 (1053)
T ss_pred HhcCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCCCcCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997765554 2222 12243223444444444455555566
Q ss_pred hhccccC
Q 039776 899 SLLLKNY 905 (922)
Q Consensus 899 sl~l~~~ 905 (922)
++.|...
T Consensus 860 alaL~~e 866 (1053)
T TIGR01523 860 AMGLGLE 866 (1053)
T ss_pred HHhhccC
Confidence 6666543
No 22
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=1.5e-75 Score=717.06 Aligned_cols=551 Identities=23% Similarity=0.314 Sum_probs=436.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeec
Q 039776 342 DFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVAS 421 (922)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPa 421 (922)
+|++. .++++++++...+..++++|+++.+++|.++.+.+++|+| ||+ +++|+++||+|||+|++++||+|||
T Consensus 35 ~~~~~-~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViR---dg~---~~~I~~~~Lv~GDiv~l~~Gd~IPa 107 (917)
T TIGR01116 35 AFVEP-FVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLR---DGR---WSVIKAKDLVPGDIVELAVGDKVPA 107 (917)
T ss_pred cHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEE---CCE---EEEEEHHHCCCCCEEEECCCCEeec
Confidence 45554 5566777788888999999999999999999999999998 786 7899999999999999999999999
Q ss_pred eEEEEecc-eeeecccccCCCcccccCCC-------------CeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhh
Q 039776 422 DGYVLWGK-SYVNESMITGEAWPVAKREG-------------DTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQ 487 (922)
Q Consensus 422 D~~vl~g~-~~vdes~lTGEs~pv~k~~g-------------~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~ 487 (922)
||++++|+ +.||||+|||||.|+.|.++ +.+|+||.+.+|.++++|++||.+|.+||+.+++++.+
T Consensus 108 D~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~ 187 (917)
T TIGR01116 108 DIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAE 187 (917)
T ss_pred cEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccC
Confidence 99999996 89999999999999999876 78999999999999999999999999999999999988
Q ss_pred ccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHH
Q 039776 488 MAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAV 567 (922)
Q Consensus 488 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~ 567 (922)
.+++|+|+.+++++.++++++++++++.++++........+...|. ..+...+..++++++++|||+|++++++++
T Consensus 188 ~~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l 263 (917)
T TIGR01116 188 QEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWI----QGAIYYFKIAVALAVAAIPEGLPAVITTCL 263 (917)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH----HHHHHHHHHHHhhhhhccccccHHHHHHHH
Confidence 8999999999999999988887777766655432211000011111 234556667889999999999999999999
Q ss_pred HHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEccccc---------------------------
Q 039776 568 MVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNM--------------------------- 620 (922)
Q Consensus 568 ~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~--------------------------- 620 (922)
+.+.++|+++|+++|+++++|+||++|+||||||||||+|+|++.++...++.
T Consensus 264 ~~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (917)
T TIGR01116 264 ALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYAPEGGVIKDDGPV 343 (917)
T ss_pred HHHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEecCCcccccceEEecCCccCCCccccccCCcc
Confidence 99999999999999999999999999999999999999999999998653210
Q ss_pred ---C---HHHHHHHHHHH---------------------H-HHHHHHHhcccccCCC--------------------CCc
Q 039776 621 ---V---LRDFYELVAAT---------------------E-AIIEYANKFREDEENP--------------------MWP 652 (922)
Q Consensus 621 ---~---~~~~~~~~~~~---------------------e-ai~~~~~~~~~~~~~~--------------------~~~ 652 (922)
. .++++..++.+ | |+++++++.+.+.... ...
T Consensus 344 ~~~~~~~~~~l~~~~~lc~~~~~~~~~~~~~~~~~gdp~E~ALl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (917)
T TIGR01116 344 AGGQDAGLEELATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPALGCNSVWNDKFKKL 423 (917)
T ss_pred cccchHHHHHHHHHHHhcCCCeeeccccCCceeeccChhHHHHHHHHHHcCCCchhcccccccccccchhHHHHhhccee
Confidence 0 11122221111 1 5666665543221100 001
Q ss_pred CccceeeeecCcEEEEEcC----eEEEEechhhhhhCC--------C--CCCcc----hHHHHHHHhc-cCceEEEEEE-
Q 039776 653 EAQDFVSITGHGVKAIVRN----KEIMVGNKSLMLDNN--------I--DIPPD----TEEMLTETEG-MAQTEILVSV- 712 (922)
Q Consensus 653 ~~~~~~~~~g~gi~~~~~~----~~~~~g~~~~~~~~~--------~--~~~~~----~~~~~~~~~~-~~~~~l~v~~- 712 (922)
...+|.+.. +.+...+++ .-+..|+++.+.+.. . +.+++ ..+..+++.+ +|.|++.+++
T Consensus 424 ~~~pF~s~r-K~msviv~~~~~~~~~~KGApe~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~~GlRvl~~A~k 502 (917)
T TIGR01116 424 ATLEFSRDR-KSMSVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFK 502 (917)
T ss_pred eecccChhh-CeEEEEEeeCCcEEEEEcCChHHHHHhccceecCCCCeeeCCHHHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence 112333322 233444432 234568888765432 1 22222 2344566788 8999998863
Q ss_pred ----------------------CCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc-----
Q 039776 713 ----------------------DGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE----- 765 (922)
Q Consensus 713 ----------------------~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~----- 765 (922)
|.+++|+++++||+|++++++|++||++|++++|+|||+..+|.++|+++|+.
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~ 582 (917)
T TIGR01116 503 DIPDPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDED 582 (917)
T ss_pred ECCccccccccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCcc
Confidence 34799999999999999999999999999999999999999999999999984
Q ss_pred --------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCCcHHH
Q 039776 766 --------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIA 819 (922)
Q Consensus 766 --------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~ 819 (922)
.+++|++|+||.++++.+|+.|+.|+|+|||.||+|||++|||||+||+|++.+
T Consensus 583 v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g~g~~~a 662 (917)
T TIGR01116 583 VTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSGTEVA 662 (917)
T ss_pred ccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECCCCcHHH
Confidence 389999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhhcchhhhhhhh
Q 039776 820 IEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAAGAIFPTTRFRLPPWIAGAAMATSSVSVVCSS 899 (922)
Q Consensus 820 ~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~~~~~~~~g~~l~p~~a~~~~~~ss~~v~~~s 899 (922)
+++||+++.+++|..+.+++++||++++|+++++.|.+..|+..+.+.+...+ .|+ ..|+-+.-+.....+...+.+
T Consensus 663 k~aAD~vl~dd~f~~i~~~i~~GR~~~~ni~k~i~~~l~~ni~~~~~~~~~~~--~~~-~~pl~~~qll~inli~d~lp~ 739 (917)
T TIGR01116 663 KEASDMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCIFLTAA--LGI-PEGLIPVQLLWVNLVTDGLPA 739 (917)
T ss_pred HHhcCeEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HcC-CchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976655542211 221 235544445555555565666
Q ss_pred hccccCCC
Q 039776 900 LLLKNYKK 907 (922)
Q Consensus 900 l~l~~~~~ 907 (922)
+.|...++
T Consensus 740 ~~l~~~~~ 747 (917)
T TIGR01116 740 TALGFNPP 747 (917)
T ss_pred HHHhcCCc
Confidence 66654433
No 23
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=2.7e-75 Score=677.16 Aligned_cols=476 Identities=36% Similarity=0.496 Sum_probs=421.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhc--cCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEec
Q 039776 351 ISFILLGKYLEVLAKGKTSEAIAKLLD--LAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWG 428 (922)
Q Consensus 351 ~~~~~~~~~~e~~~~~~~~~~l~~l~~--~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g 428 (922)
+++.+++.+++.++++++.+.++.|.+ ++|++++++| +| +++|++++|+|||+|++++||+|||||+|++|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r---~g----~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g 75 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLR---NG----WKEIPASDLVPGDIVLVKSGEIVPADGVLLSG 75 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEE---CC----eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEc
Confidence 456788999999999999999999998 8999999998 55 47899999999999999999999999999999
Q ss_pred ceeeecccccCCCcccccCCCCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHh-cchhhH
Q 039776 429 KSYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRAS-KYFVPL 507 (922)
Q Consensus 429 ~~~vdes~lTGEs~pv~k~~g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 507 (922)
.+.||||+|||||.|+.|++||.+++|+.+.+|.++++|+++|.+|..+++...++++...++++++..+++. .+++++
T Consensus 76 ~~~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~ 155 (499)
T TIGR01494 76 SCFVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILF 155 (499)
T ss_pred cEEEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888999999999999 899999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCchHh
Q 039776 508 VIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQAL 587 (922)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~ 587 (922)
+++++++++++|+...... .+|..++.+++++++++|||+|++++|+++..+..+++++|+++|+++++
T Consensus 156 ~~~la~~~~~~~~~~~~~~-----------~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~l 224 (499)
T TIGR01494 156 VLLIALAVFLFWAIGLWDP-----------NSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNAL 224 (499)
T ss_pred HHHHHHHHHHHHHHHHccc-----------ccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhh
Confidence 9999988888876542100 03677899999999999999999999999999999999999999999999
Q ss_pred hhhcCccEEEecCCCcccCCceEEEEEEcccc-cCHHHHHHHHHHHHHHHHHHHhcccccCCCCCcCccceeeeecCcEE
Q 039776 588 ESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKN-MVLRDFYELVAATEAIIEYANKFREDEENPMWPEAQDFVSITGHGVK 666 (922)
Q Consensus 588 e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~-~~~~~~~~~~~~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~ 666 (922)
|+||++|++|||||||||+|+|++.++...+. ....+- ...|++++++... ....+|.... +|+.
T Consensus 225 E~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~s~hp-----~~~ai~~~~~~~~--------~~~~~f~~~~-~~~~ 290 (499)
T TIGR01494 225 EELGKVDYICSDKTGTLTKNEMSFKKVSVLGGEYLSGHP-----DERALVKSAKWKI--------LNVFEFSSVR-KRMS 290 (499)
T ss_pred hhccCCcEEEeeCCCccccCceEEEEEEecCCCcCCCCh-----HHHHHHHHhhhcC--------cceeccCCCC-ceEE
Confidence 99999999999999999999999999876531 110000 1126666665311 1234566666 6777
Q ss_pred EEEcC--eEEEEechhhhhhCCCCCCcchHHHHHHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEE
Q 039776 667 AIVRN--KEIMVGNKSLMLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRS 744 (922)
Q Consensus 667 ~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~ 744 (922)
+.+++ +.+.+|+++++.+.... ..+..+.+...|.+.++++++.+++|++.++|++|++++++++.|+++|+++
T Consensus 291 ~~~~~~~~~~~~G~~~~i~~~~~~----~~~~~~~~~~~g~~~~~~a~~~~~~g~i~l~d~lr~~~~~~i~~l~~~gi~~ 366 (499)
T TIGR01494 291 VIVRGPDGTYVKGAPEFVLSRVKD----LEEKVKELAQSGLRVLAVASKETLLGLLGLEDPLRDDAKETISELREAGIRV 366 (499)
T ss_pred EEEecCCcEEEeCCHHHHHHhhHH----HHHHHHHHHhCCCEEEEEEECCeEEEEEEecCCCchhHHHHHHHHHHCCCeE
Confidence 87765 67899999988654321 2333445667899999999999999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcC
Q 039776 745 ILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAAD 824 (922)
Q Consensus 745 ~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad 824 (922)
+|+|||+..++..+|+++|+ +++++|++|.++++.+|++|+.|+|+|||.||++|++.|||||+|+ ++++||
T Consensus 367 ~~ltGD~~~~a~~ia~~lgi---~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~Advgia~~-----a~~~ad 438 (499)
T TIGR01494 367 IMLTGDNVLTAKAIAKELGI---FARVTPEEKAALVEALQKKGRVVAMTGDGVNDAPALKKADVGIAMG-----AKAAAD 438 (499)
T ss_pred EEEcCCCHHHHHHHHHHcCc---eeccCHHHHHHHHHHHHHCCCEEEEECCChhhHHHHHhCCCccccc-----hHHhCC
Confidence 99999999999999999997 8999999999999999999999999999999999999999999997 689999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039776 825 IVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAAGA 870 (922)
Q Consensus 825 ~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~~~ 870 (922)
++++++++..++.++++||++++++++|+.|++.||++.+++++++
T Consensus 439 ivl~~~~l~~i~~~~~~~r~~~~~i~~~~~~~~~~n~~~~~~a~~~ 484 (499)
T TIGR01494 439 IVLLDDNLSTIVDALKEGRKTFSTIKSNIFWAIAYNLILIPLAALL 484 (499)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999853
No 24
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=2.7e-73 Score=706.26 Aligned_cols=537 Identities=22% Similarity=0.248 Sum_probs=422.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEc--CCCee
Q 039776 342 DFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKII--PGAKV 419 (922)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~--~G~~i 419 (922)
+||..++++++++++...+..++++|+.+.++++.. .+..++|+| ||+ +++|++++|+|||+|.++ +|++|
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~R---dg~---~~~I~s~eLvpGDiv~l~~~~g~~i 263 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVIR---NGK---WVTIASDELVPGDIVSIPRPEEKTM 263 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEEE---CCE---EEEEEcccCCCCCEEEEecCCCCEe
Confidence 456667778888889999999999999999988765 467899998 786 789999999999999999 99999
Q ss_pred eceEEEEecceeeecccccCCCcccccCCC------------------CeeecCccccc-------ceEEEEEEEecCcc
Q 039776 420 ASDGYVLWGKSYVNESMITGEAWPVAKREG------------------DTVTGGTLNEN-------GVLHIKATRVGSES 474 (922)
Q Consensus 420 PaD~~vl~g~~~vdes~lTGEs~pv~k~~g------------------~~v~~Gs~~~~-------g~~~~~v~~~g~~t 474 (922)
||||+|++|++.||||+|||||.|+.|.+. +.+|+||.+.+ |.+.++|++||.+|
T Consensus 264 PaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T 343 (1054)
T TIGR01657 264 PCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFST 343 (1054)
T ss_pred cceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccc
Confidence 999999999999999999999999999762 24999999974 88999999999999
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeee
Q 039776 475 ALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIA 554 (922)
Q Consensus 475 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~ 554 (922)
..|++.+.+...+..++++++.+.++..++..+. +++++++++.+.... .++...+.+++++++++
T Consensus 344 ~~G~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~a----~i~~i~~~~~~~~~~----------~~~~~~~l~~l~iiv~~ 409 (1054)
T TIGR01657 344 SKGQLVRSILYPKPRVFKFYKDSFKFILFLAVLA----LIGFIYTIIELIKDG----------RPLGKIILRSLDIITIV 409 (1054)
T ss_pred cchHHHHHhhCCCCCCCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcC----------CcHHHHHHHHHHHHHhh
Confidence 9999999998887778888887777665443333 223322222221111 15677888999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEccccc-------------C
Q 039776 555 CPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNM-------------V 621 (922)
Q Consensus 555 ~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~-------------~ 621 (922)
+|++||+++++++..++.+|+|+|++||++.++|.+|++|++|||||||||+|+|.|.++...++. .
T Consensus 410 vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~~~~~~~~~~~~ 489 (1054)
T TIGR01657 410 VPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEFLKIVTEDSSLK 489 (1054)
T ss_pred cCchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCccccccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999998764321 0
Q ss_pred HHHHHHHHHHHH----------------HHHHHHHhcccc-cCC-C---------------CCc--CccceeeeecCcEE
Q 039776 622 LRDFYELVAATE----------------AIIEYANKFRED-EEN-P---------------MWP--EAQDFVSITGHGVK 666 (922)
Q Consensus 622 ~~~~~~~~~~~e----------------ai~~~~~~~~~~-~~~-~---------------~~~--~~~~~~~~~g~gi~ 666 (922)
...+....+.++ |+.+++...... ... . ... ...+|.+.. +.+.
T Consensus 490 ~~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~S~~-krMs 568 (1054)
T TIGR01657 490 PSITHKALATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSSAL-QRMS 568 (1054)
T ss_pred chHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCceEEEEEEEeecCCC-CEEE
Confidence 112222222222 455443211000 000 0 000 001222221 2233
Q ss_pred EEEc----Ce--EEEEechhhhhhCCC--CCCcchHHHHHHHhccCceEEEEEE---------------------CCEEE
Q 039776 667 AIVR----NK--EIMVGNKSLMLDNNI--DIPPDTEEMLTETEGMAQTEILVSV---------------------DGELT 717 (922)
Q Consensus 667 ~~~~----~~--~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~v~~---------------------~~~~~ 717 (922)
..++ ++ -+..|+++.+.+... ..|+++++..+++.++|.|++.+++ |++|+
T Consensus 569 vvv~~~~~~~~~~~~KGApE~Il~~c~~~~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~fl 648 (1054)
T TIGR01657 569 VIVSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFL 648 (1054)
T ss_pred EEEEEcCCCeEEEEEECCHHHHHHHcCCcCCChhHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEE
Confidence 3332 12 467799998876443 5678888889999999999999874 45899
Q ss_pred EEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc--------------------------------
Q 039776 718 GVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE-------------------------------- 765 (922)
Q Consensus 718 G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~-------------------------------- 765 (922)
|+++++|++||+++++|++|+++|++++|+|||+..||.++|+++||.
T Consensus 649 Gli~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1054)
T TIGR01657 649 GFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPF 728 (1054)
T ss_pred EEEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCcccc
Confidence 999999999999999999999999999999999999999999999991
Q ss_pred ---------------------------------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEc
Q 039776 766 ---------------------------------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVG 794 (922)
Q Consensus 766 ---------------------------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vG 794 (922)
.+|+|++|+||.++|+.+|+.|+.|+|+|
T Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~g~~V~m~G 808 (1054)
T TIGR01657 729 ASTQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKLDYTVGMCG 808 (1054)
T ss_pred ccccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhCCCeEEEEe
Confidence 37899999999999999999999999999
Q ss_pred CCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 039776 795 DGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAAGAIFPT 874 (922)
Q Consensus 795 Dg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~~~~~~~ 874 (922)
||.||++||++||||||||++ | |..+||+++.+++++.++.+|++||+++.++++.+.|.+.|+++.....+ .++ +
T Consensus 809 DG~ND~~ALK~AdVGIam~~~-d-as~AA~f~l~~~~~~~I~~~I~eGR~~l~~~~~~~~~~~~~~~~~~~~~~-~l~-~ 884 (1054)
T TIGR01657 809 DGANDCGALKQADVGISLSEA-E-ASVAAPFTSKLASISCVPNVIREGRCALVTSFQMFKYMALYSLIQFYSVS-ILY-L 884 (1054)
T ss_pred CChHHHHHHHhcCcceeeccc-c-ceeecccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-H
Confidence 999999999999999999965 3 44889999999999999999999999999999999999999987654332 222 2
Q ss_pred CCCCCCHHHHHHHhhcchhhhhhhhhccccCCC
Q 039776 875 TRFRLPPWIAGAAMATSSVSVVCSSLLLKNYKK 907 (922)
Q Consensus 875 ~g~~l~p~~a~~~~~~ss~~v~~~sl~l~~~~~ 907 (922)
.|..++|+. ++....++....++.|.+-+|
T Consensus 885 ~~~~l~~~Q---~l~i~li~~~~~~l~l~~~~p 914 (1054)
T TIGR01657 885 IGSNLGDGQ---FLTIDLLLIFPVALLMSRNKP 914 (1054)
T ss_pred ccCcCccHH---HHHHHHHHHHHHHHHHHcCCc
Confidence 344455543 344444555556666655443
No 25
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-64 Score=532.82 Aligned_cols=485 Identities=29% Similarity=0.415 Sum_probs=397.7
Q ss_pred cchhhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHhccC-CCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCe
Q 039776 341 KDFFETSS-MLISFILLGKYLEVLAKGKTSEAIAKLLDLA-PEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAK 418 (922)
Q Consensus 341 ~~~~~~~~-~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~-~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~ 418 (922)
..|..... ++++.+++..+-|..++.|.+.+..+|++.. ...+++++. +|. .+.+++.+|+.||+|+|+.||.
T Consensus 62 ~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~~--~g~---~~~v~st~Lk~gdiV~V~age~ 136 (681)
T COG2216 62 RLFNLAITIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLRA--DGS---IEMVPATELKKGDIVLVEAGEI 136 (681)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhcC--CCC---eeeccccccccCCEEEEecCCC
Confidence 34544433 4444567899999999999887777776643 234566652 465 7899999999999999999999
Q ss_pred eeceEEEEecceeeecccccCCCcccccCCC---CeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHH
Q 039776 419 VASDGYVLWGKSYVNESMITGEAWPVAKREG---DTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQK 495 (922)
Q Consensus 419 iPaD~~vl~g~~~vdes~lTGEs~pv~k~~g---~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~ 495 (922)
||+||.|++|.++||||.+||||.||-|++| +.|-.||.+.+.+++++++....+|++.|++.+++.++.+|+|-+-
T Consensus 137 IP~DGeVIeG~asVdESAITGESaPViresGgD~ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEI 216 (681)
T COG2216 137 IPSDGEVIEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNEI 216 (681)
T ss_pred ccCCCeEEeeeeecchhhccCCCcceeeccCCCcccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHH
Confidence 9999999999999999999999999999998 7899999999999999999999999999999999999999999665
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHH
Q 039776 496 FADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGA 575 (922)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~ 575 (922)
-+.-+..-+ -++|++++.++.. +..+.... ...+...+++++..+|-.++--++.-=..++.|+.
T Consensus 217 AL~iLL~~L-TliFL~~~~Tl~p--~a~y~~g~------------~~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv~ 281 (681)
T COG2216 217 ALTILLSGL-TLIFLLAVATLYP--FAIYSGGG------------AASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVT 281 (681)
T ss_pred HHHHHHHHH-HHHHHHHHHhhhh--HHHHcCCC------------CcCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHhh
Confidence 443332211 1222222222111 11110000 01234557788888999888777777777899999
Q ss_pred HcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccCHHHHHHHHHHHH---------HHHHHHHhccccc
Q 039776 576 SQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAATE---------AIIEYANKFREDE 646 (922)
Q Consensus 576 ~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~e---------ai~~~~~~~~~~~ 646 (922)
+.|++.++++++|.+|.+|+++.|||||+|-|+-.-.++.+.++.+.+++.+.+..+. +|++.+++.+...
T Consensus 282 ~~NViA~SGRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p~~gv~~~~la~aa~lsSl~DeTpEGrSIV~LA~~~~~~~ 361 (681)
T COG2216 282 QFNVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFIPVPGVSEEELADAAQLASLADETPEGRSIVELAKKLGIEL 361 (681)
T ss_pred hhceeecCcchhhhcCCccEEEecccCceeecchhhhheecCCCCCHHHHHHHHHHhhhccCCCCcccHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999887776554 8999998775433
Q ss_pred CCCCCc---Cccceeeeec-CcEEEEEcCeEEEEechh----hhhhCCCCCCcchHHHHHHHhccCceEEEEEECCEEEE
Q 039776 647 ENPMWP---EAQDFVSITG-HGVKAIVRNKEIMVGNKS----LMLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTG 718 (922)
Q Consensus 647 ~~~~~~---~~~~~~~~~g-~gi~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~G 718 (922)
...... +..+|..... .|+.. -++++++.|+.+ ++.+.+...|++.+...++..+.|.+++.|..|++++|
T Consensus 362 ~~~~~~~~~~fvpFtA~TRmSGvd~-~~~~~irKGA~dai~~~v~~~~g~~p~~l~~~~~~vs~~GGTPL~V~~~~~~~G 440 (681)
T COG2216 362 REDDLQSHAEFVPFTAQTRMSGVDL-PGGREIRKGAVDAIRRYVRERGGHIPEDLDAAVDEVSRLGGTPLVVVENGRILG 440 (681)
T ss_pred CcccccccceeeecceecccccccC-CCCceeecccHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCceEEEECCEEEE
Confidence 222211 1223332221 12211 133788899854 45566777899999999999999999999999999999
Q ss_pred EEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHcCCeEEEEcCCcc
Q 039776 719 VLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGIN 798 (922)
Q Consensus 719 ~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~n 798 (922)
++.++|-++|+.+|-+.+||++|++.+|+||||+.||..||++.|++.+.++.+||+|.++|+.-|.+|+-|+|+|||.|
T Consensus 441 VI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAeatPEdK~~~I~~eQ~~grlVAMtGDGTN 520 (681)
T COG2216 441 VIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIAEATPEDKLALIRQEQAEGRLVAMTGDGTN 520 (681)
T ss_pred EEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhhcCChHHHHHHHHHHHhcCcEEEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHH
Q 039776 799 DSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTF 846 (922)
Q Consensus 799 D~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~ 846 (922)
|+|||.+||||++|.+|++.|||+++.|=+++|+..+.+.+.+|++.+
T Consensus 521 DAPALAqAdVg~AMNsGTqAAkEAaNMVDLDS~PTKlievV~IGKqlL 568 (681)
T COG2216 521 DAPALAQADVGVAMNSGTQAAKEAANMVDLDSNPTKLIEVVEIGKQLL 568 (681)
T ss_pred cchhhhhcchhhhhccccHHHHHhhcccccCCCccceehHhhhhhhhe
Confidence 999999999999999999999999999999999999999999999864
No 26
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-64 Score=562.04 Aligned_cols=528 Identities=23% Similarity=0.309 Sum_probs=410.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCccCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCC
Q 039776 312 VLIALGTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEE 391 (922)
Q Consensus 312 ~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~ 391 (922)
.|+-=.+...|++.+|+++.|. ..+|+.+++.++++.+++-++..++.+++...++++.... ..++|+| |
T Consensus 188 iLv~EvL~PfYlFQ~fSv~lW~------~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~~-~~V~V~R---~ 257 (1140)
T KOG0208|consen 188 ILVKEVLNPFYLFQAFSVALWL------ADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKFT-CPVTVIR---D 257 (1140)
T ss_pred HHHHhccchHHHHHhHHhhhhh------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEE---C
Confidence 3333334456888888887753 4668888888888999999999999999999999988754 6789998 6
Q ss_pred CCcceeEEecCCCcCCCCEEEEcC-CCeeeceEEEEecceeeecccccCCCcccccCCC-------------------Ce
Q 039776 392 GNVISEEEIDSRLIQRNDVIKIIP-GAKVASDGYVLWGKSYVNESMITGEAWPVAKREG-------------------DT 451 (922)
Q Consensus 392 g~~~~~~~i~~~~l~~GDiv~v~~-G~~iPaD~~vl~g~~~vdes~lTGEs~pv~k~~g-------------------~~ 451 (922)
|. +++|+++||+|||++++.+ |-..|||++|++|+|.||||+|||||+|+.|.+- +.
T Consensus 258 g~---~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~ 334 (1140)
T KOG0208|consen 258 GF---WETVDSSELVPGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHT 334 (1140)
T ss_pred CE---EEEEeccccccccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcce
Confidence 76 8999999999999999999 8899999999999999999999999999999872 45
Q ss_pred eecCccccc------ceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhc
Q 039776 452 VTGGTLNEN------GVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNF 525 (922)
Q Consensus 452 v~~Gs~~~~------g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (922)
+|.||.+.+ +.+.++|+|||.+|..|++.+.+...+....++-+-+.++... +.+++++.+++..+....
T Consensus 335 lfcGT~vlq~r~~~g~~v~a~V~RTGF~T~KGqLVRsilyPkP~~fkfyrds~~fi~~----l~~ia~~gfiy~~i~l~~ 410 (1140)
T KOG0208|consen 335 LFCGTKVLQARAYLGGPVLAMVLRTGFSTTKGQLVRSILYPKPVNFKFYRDSFKFILF----LVIIALIGFIYTAIVLNL 410 (1140)
T ss_pred eeccceEEEeecCCCCceEEEEEeccccccccHHHHhhcCCCCcccHHHHHHHHHHHH----HHHHHHHHHHHHhHhHHH
Confidence 899998765 7899999999999999999998876654444443333333222 223333333332222111
Q ss_pred CCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCccc
Q 039776 526 HSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMT 605 (922)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT 605 (922)
.+ .++...+.+++.++.+.+|+|||.+++++...+.+|+.|+||+|-+++.+...|++|++|||||||||
T Consensus 411 ~g----------~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLT 480 (1140)
T KOG0208|consen 411 LG----------VPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLT 480 (1140)
T ss_pred cC----------CCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCccc
Confidence 11 25677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEccccc-----C-----------------------HHHHHHHHHHHHHHHHHHHhcccc------------
Q 039776 606 IGKPVVVNTKLLKNM-----V-----------------------LRDFYELVAATEAIIEYANKFRED------------ 645 (922)
Q Consensus 606 ~~~~~v~~~~~~~~~-----~-----------------------~~~~~~~~~~~eai~~~~~~~~~~------------ 645 (922)
++.+.+..+.+..+. . ...+....+.++++...-..+..+
T Consensus 481 EdGLDl~gv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~atCHSL~~v~g~l~GDPLdlkmfe~t~w 560 (1140)
T KOG0208|consen 481 EDGLDLWGVVPVERNVDDGPELKVVTEDSLQLFYKLSLRSSSLPMGNLVAAMATCHSLTLVDGTLVGDPLDLKMFESTGW 560 (1140)
T ss_pred ccceeEEEEEeccccccccchhhhhhhhhccceeeccccccCCchHHHHHHHhhhceeEEeCCeeccCceeeeeeeccce
Confidence 999999888763211 0 012222222333111000000000
Q ss_pred ---c-----------CC--C---CCcC-----cc-----ceeeee-------cCcEEEEEcC------eEEEEechhhhh
Q 039776 646 ---E-----------EN--P---MWPE-----AQ-----DFVSIT-------GHGVKAIVRN------KEIMVGNKSLML 683 (922)
Q Consensus 646 ---~-----------~~--~---~~~~-----~~-----~~~~~~-------g~gi~~~~~~------~~~~~g~~~~~~ 683 (922)
+ .. + ..+. .. .+..+. =+.++.+++. ..+..|+++.+.
T Consensus 561 ~~ee~~~~~~~~~~~~~~~p~v~~p~~~~~~~~t~~~~~~~si~k~feF~S~LrRMSVIv~~~~e~~~~~ftKGaPE~I~ 640 (1140)
T KOG0208|consen 561 VYEEADIEDEATREFNTLIPTVVRPPENAFNQSTECGEGEISIVKQFEFSSALRRMSVIVSTGGEDKMMVFTKGAPESIA 640 (1140)
T ss_pred EEEeccccchhhhhhCCccCCEeCCCcccccCCCcCCCcceEEEEecccchhhheEEEEEecCCCCceEeeccCCHHHHH
Confidence 0 00 0 0000 00 000000 0123333321 135568998886
Q ss_pred hCCC--CCCcchHHHHHHHhccCceEEEEEE---------------------CCEEEEEEEcCCCcchhHHHHHHHHHHC
Q 039776 684 DNNI--DIPPDTEEMLTETEGMAQTEILVSV---------------------DGELTGVLSISDPLKPGAHGVISILKSM 740 (922)
Q Consensus 684 ~~~~--~~~~~~~~~~~~~~~~~~~~l~v~~---------------------~~~~~G~~~~~d~~r~~~~~~i~~l~~~ 740 (922)
.-.. .+|.++++.++.+...|.|++.+|. |.+|+|++.+++++|++.+.+|++|.++
T Consensus 641 ~ic~p~tvP~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~A 720 (1140)
T KOG0208|consen 641 EICKPETVPADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRA 720 (1140)
T ss_pred HhcCcccCCccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhh
Confidence 6443 4699999999999999999999873 6799999999999999999999999999
Q ss_pred CCEEEEEcCCCHHHHHHHHHHhCCc-------------------------------------------------------
Q 039776 741 QIRSILVTGDNWGTAKSIASEVGIE------------------------------------------------------- 765 (922)
Q Consensus 741 gi~~~~~tgd~~~~a~~ia~~~gi~------------------------------------------------------- 765 (922)
+|+++|+||||..||..+||+||+-
T Consensus 721 nIRtVMcTGDNllTaisVakeCgmi~p~~~v~~~~~~~~~~~~~~~i~w~~ve~~~~~~~~~~~~~~~~~~~~~~d~~~~ 800 (1140)
T KOG0208|consen 721 NIRTVMCTGDNLLTAISVAKECGMIEPQVKVIIPELEPPEDDSIAQIVWLCVESQTQFLDPKEPDPDLASVKLSLDVLSE 800 (1140)
T ss_pred cceEEEEcCCchheeeehhhcccccCCCCeEEEEeccCCccCCCceeEEEEccCccccCCCCccCccccCCccChhhhcc
Confidence 9999999999999999999999982
Q ss_pred ------------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCC
Q 039776 766 ------------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAG 815 (922)
Q Consensus 766 ------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~ 815 (922)
.+|+||+|+||.++|+.||+.|+.|+|+|||.||+.||++|||||+++.+
T Consensus 801 ~~yhlA~sG~~f~~i~~~~~~l~~~Il~~~~VfARMsP~qK~~Lie~lQkl~y~VgfCGDGANDCgALKaAdvGISLSea 880 (1140)
T KOG0208|consen 801 KDYHLAMSGKTFQVILEHFPELVPKILLKGTVFARMSPDQKAELIEALQKLGYKVGFCGDGANDCGALKAADVGISLSEA 880 (1140)
T ss_pred ceeEEEecCchhHHHHhhcHHHHHHHHhcCeEEeecCchhHHHHHHHHHhcCcEEEecCCCcchhhhhhhcccCcchhhh
Confidence 69999999999999999999999999999999999999999999999753
Q ss_pred cHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039776 816 TDIAIEAADIVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAA 868 (922)
Q Consensus 816 ~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~ 868 (922)
.|.-+|.+.....+.+.++.+|++||..+-.-...|+|...|.++.....+
T Consensus 881 --EASvAApFTSk~~~I~cVp~vIrEGRaALVTSf~~FkYMalYs~iqFisv~ 931 (1140)
T KOG0208|consen 881 --EASVAAPFTSKTPSISCVPDVIREGRAALVTSFACFKYMALYSAIQFISVV 931 (1140)
T ss_pred --hHhhcCccccCCCchhhHhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 566788998888899999999999999999999999999999888766554
No 27
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-66 Score=570.38 Aligned_cols=503 Identities=24% Similarity=0.333 Sum_probs=401.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEE
Q 039776 347 SSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVL 426 (922)
Q Consensus 347 ~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl 426 (922)
+.++..++.+......++..|+.+.+.++.++.|..++|+| ||. ...+..++|++||+|.++-|++||||.+++
T Consensus 129 giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~ViR---dg~---k~~i~~eelVvGD~v~vk~GdrVPADiRii 202 (1019)
T KOG0203|consen 129 GIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVIR---DGE---KMTINAEELVVGDLVEVKGGDRVPADIRII 202 (1019)
T ss_pred EEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheeee---cce---eEEechhhcccccceeeccCCcccceeEEE
Confidence 34455555556677788889999999999999999999999 787 788999999999999999999999999999
Q ss_pred ecc-eeeecccccCCCcccccCC----------CCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHH
Q 039776 427 WGK-SYVNESMITGEAWPVAKRE----------GDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQK 495 (922)
Q Consensus 427 ~g~-~~vdes~lTGEs~pv~k~~----------g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~ 495 (922)
++. ++||+|+|||||+|..+.+ -|.-|.+|.+.+|..++.|.+||.+|.+|+|..+...-...++|+++
T Consensus 203 s~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~~~~ 282 (1019)
T KOG0203|consen 203 SATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTPIAK 282 (1019)
T ss_pred EecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCcchh
Confidence 998 7999999999999999876 35689999999999999999999999999999988777788999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHH
Q 039776 496 FADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGA 575 (922)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~ 575 (922)
..+++..+.....+++.+..|+..+..++ .+..++.+.++++++.+|.+|+..++..+....++|+
T Consensus 283 ei~~fi~~it~vAi~~~i~fF~~~~~~gy--------------~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrMa 348 (1019)
T KOG0203|consen 283 EIEHFIHIITGVAIFLGISFFILALILGY--------------EWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRMA 348 (1019)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHhhcc--------------hhHHHhhhhheeEEecCcCCccceehhhHHHHHHHHh
Confidence 99999998887777777766655444432 5677888899999999999999999999999999999
Q ss_pred HcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEEEEcccccC----------------H---HHHHHHHHHHH---
Q 039776 576 SQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLKNMV----------------L---RDFYELVAATE--- 633 (922)
Q Consensus 576 ~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~----------------~---~~~~~~~~~~e--- 633 (922)
++++++||.++.|++|..++||.|||||||+|.|.|.+++...... . .++...+..+.
T Consensus 349 ~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~~i~~~d~~~~~~~~~~~~~~~~~~~l~r~~~lCn~a~ 428 (1019)
T KOG0203|consen 349 RKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQIHEADTTEDQSGQSFDKSSATFIALSRIATLCNRAV 428 (1019)
T ss_pred hceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCCceeeeechhhhhcccccccCchHHHHHHHHHHhCcce
Confidence 9999999999999999999999999999999999999876543210 1 11222221111
Q ss_pred ----------------------HHHHHHHhcccccC--CCCCc--CccceeeeecCcEEEEE-------cCeEEEEechh
Q 039776 634 ----------------------AIIEYANKFREDEE--NPMWP--EAQDFVSITGHGVKAIV-------RNKEIMVGNKS 680 (922)
Q Consensus 634 ----------------------ai~~~~~~~~~~~~--~~~~~--~~~~~~~~~g~gi~~~~-------~~~~~~~g~~~ 680 (922)
|+++++.....+.. ....+ ....|.+....-+.... +.--+..|+++
T Consensus 429 ~~~gq~dvPv~kk~v~G~~se~ALlk~~e~~~~~~~~~R~~~~kv~eipfNSt~Kyqlsih~~~d~~~~~~~l~mKGape 508 (1019)
T KOG0203|consen 429 FKPGQDDVPVLKRDVAGDASEVALLKFIELILGSVMELRERNPKVAEIPFNSTNKYQLSIHETEDPSDPRFLLVMKGAPE 508 (1019)
T ss_pred ecccccCCceeeeeccCCHHHHHHHHHHHHhcchHHHHHHhhHHhhcCCcccccceEEEEEecCCCCCccceeeecCChH
Confidence 66666543211100 00000 01122222222221111 11134457776
Q ss_pred hhhhC-------CCC--CCcchHHH----HHHHhccCceEEEE------------------------EECCEEEEEEEcC
Q 039776 681 LMLDN-------NID--IPPDTEEM----LTETEGMAQTEILV------------------------SVDGELTGVLSIS 723 (922)
Q Consensus 681 ~~~~~-------~~~--~~~~~~~~----~~~~~~~~~~~l~v------------------------~~~~~~~G~~~~~ 723 (922)
.+.+. +.+ .++..++. ...+...|.+++.+ -.|..|+|++++-
T Consensus 509 ~il~~CSTi~i~g~e~pld~~~~~~f~~ay~~lg~~GerVlgF~~~~l~~~~~p~~~~f~~d~~n~p~~nl~FlGl~s~i 588 (1019)
T KOG0203|consen 509 RILDRCSTILINGEEKPLDEKLKEAFQEAYLELGGLGERVLGFCDLELPDEKFPRGFQFDTDDVNFPTDNLRFLGLISMI 588 (1019)
T ss_pred HHHhhccceeecCCCCCcCHHHHHHHHHHHHHhhhcchHHHHHHHHhcchhcCCCceEeecCCCCCcchhccccchhhcc
Confidence 65442 222 33222222 22233333333211 1367899999999
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc--------------------------------------
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE-------------------------------------- 765 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~-------------------------------------- 765 (922)
||+|..+++++..+|.+|++++|+|||++.||+++|++.||-
T Consensus 589 dPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~ 668 (1019)
T KOG0203|consen 589 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPD 668 (1019)
T ss_pred CCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccccc
Confidence 999999999999999999999999999999999999999972
Q ss_pred ---------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEec-CCcHHHHHhcCEEEeC
Q 039776 766 ---------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIG-AGTDIAIEAADIVLMK 829 (922)
Q Consensus 766 ---------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~ 829 (922)
-+|+|.+|+||+.|++..|++|..|+.+|||.||+|||+.|||||||| .|+|.+|++||+||++
T Consensus 669 ~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaGSDvsKqAADmILLD 748 (1019)
T KOG0203|consen 669 MSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLD 748 (1019)
T ss_pred cCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccccchHHHhhcceEEec
Confidence 589999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039776 830 SNLEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAAG 869 (922)
Q Consensus 830 ~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~~ 869 (922)
|||.+|+..+++||-++.|.||.+.|.++.|+.-|..-+.
T Consensus 749 DNFASIVtGVEEGRLiFDNLKKsIAYTLTsNipEI~PfL~ 788 (1019)
T KOG0203|consen 749 DNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLL 788 (1019)
T ss_pred CcchhheeecccceehhhhHHHHHHHHHHhcchhHhHHHH
Confidence 9999999999999999999999999999999998765553
No 28
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=1e-62 Score=613.94 Aligned_cols=545 Identities=17% Similarity=0.185 Sum_probs=405.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCee
Q 039776 340 GKDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKV 419 (922)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~i 419 (922)
+..++.+.++++++..+++++|++.++|+++.+ +++.++|+|+ +|+ +++++++||+|||+|.+++||+|
T Consensus 50 ~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~------n~~~~~v~~~--~~~---~~~i~~~~l~~GDiv~l~~g~~i 118 (1057)
T TIGR01652 50 RGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEV------NNRLTEVLEG--HGQ---FVEIPWKDLRVGDIVKVKKDERI 118 (1057)
T ss_pred ccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHH------hCcEEEEECC--CCc---EEEeeeecccCCCEEEEcCCCcc
Confidence 345666677777788899999999999998754 4578999872 255 78899999999999999999999
Q ss_pred eceEEEEe-----cceeeecccccCCCcccccCCC---------------------------------------------
Q 039776 420 ASDGYVLW-----GKSYVNESMITGEAWPVAKREG--------------------------------------------- 449 (922)
Q Consensus 420 PaD~~vl~-----g~~~vdes~lTGEs~pv~k~~g--------------------------------------------- 449 (922)
|||++|++ |.+.||||.|||||.|+.|++.
T Consensus 119 PaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l 198 (1057)
T TIGR01652 119 PADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPL 198 (1057)
T ss_pred cceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccC
Confidence 99999997 7799999999999999988641
Q ss_pred ---CeeecCccccc-ceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhc
Q 039776 450 ---DTVTGGTLNEN-GVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNF 525 (922)
Q Consensus 450 ---~~v~~Gs~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (922)
+.+++||.+.+ |++.+.|++||.+|++++. ....+.+++++++.++++..+++.+.++++++++++..++...
T Consensus 199 ~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n---~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~~ 275 (1057)
T TIGR01652 199 SPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRN---ATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWNDA 275 (1057)
T ss_pred CHHHhHhcCCEecCCCeEEEEEEEEchhhhhhhc---CCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheecc
Confidence 45788999988 9999999999999988664 3355667899999999999888777777776666543332211
Q ss_pred CCCCCcccC-------CccchHHHHHHHHhheeeeeccccchhhHHHHHHHHH------HHHHHc----CcEeeCchHhh
Q 039776 526 HSYPESWIP-------SSMDSFELALQFGISVMVIACPCALGLATPTAVMVGT------GVGASQ----GVLIKGGQALE 588 (922)
Q Consensus 526 ~~~~~~~~~-------~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~------~~~~~~----gi~~k~~~~~e 588 (922)
. ....|+- .....+...+.+++.++...+|.+|++.+.++...+. .+|.++ ++.+|+.+.+|
T Consensus 276 ~-~~~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~E 354 (1057)
T TIGR01652 276 H-GKDLWYIRLDVSERNAAANGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNE 354 (1057)
T ss_pred c-CCCccceecCcccccchhHHHHHHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCChH
Confidence 1 1112321 0112344567788889999999999999999999988 677764 59999999999
Q ss_pred hhcCccEEEecCCCcccCCceEEEEEEcccc-----cC------------------------------------------
Q 039776 589 STHKVNCIVFDKTGTMTIGKPVVVNTKLLKN-----MV------------------------------------------ 621 (922)
Q Consensus 589 ~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~~-----~~------------------------------------------ 621 (922)
+||++++||+|||||||+|+|.++++...+. ..
T Consensus 355 ~LG~v~~I~sDKTGTLT~N~M~~~~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1057)
T TIGR01652 355 ELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDAIRERLGSYVENENSMLVESKGFTFVDPRLVDLLKTNK 434 (1057)
T ss_pred HhcCeeEEEEcCCCceeeeeEEEEEEEECCEEecCCcchHHHHhhhcccccccccccccccccccccCcHHHHHhhhcCC
Confidence 9999999999999999999999999853210 00
Q ss_pred -----HHHHHHHHHHH------------------------HHHHHHHHhcccccCC--C----------------CCcCc
Q 039776 622 -----LRDFYELVAAT------------------------EAIIEYANKFREDEEN--P----------------MWPEA 654 (922)
Q Consensus 622 -----~~~~~~~~~~~------------------------eai~~~~~~~~~~~~~--~----------------~~~~~ 654 (922)
..+++...+.+ +|++++++..+..... . .....
T Consensus 435 ~~~~~~~~~l~~l~lC~~v~~~~~~~~~~~~~y~~~sp~E~ALl~~a~~~g~~~~~~~~~~~~~~i~~~~~~~~~~il~~ 514 (1057)
T TIGR01652 435 PNAKRINEFFLALALCHTVVPEFNDDGPEEITYQAASPDEAALVKAARDVGFVFFERTPKSISLLIEMHGETKEYEILNV 514 (1057)
T ss_pred chhHHHHHHHHHHHhcCcccccccCCCCCceEEEccCCcHHHHHHHHHHCCCEEEEecCCceEEEEEeCCCEEEEEEEEe
Confidence 01121111100 1555555544321100 0 00001
Q ss_pred cceeeeecCcEEEEEcC--e---EEEEechhhhhhCCCC----CCcchHHHHHHHhccCceEEEEEE-------------
Q 039776 655 QDFVSITGHGVKAIVRN--K---EIMVGNKSLMLDNNID----IPPDTEEMLTETEGMAQTEILVSV------------- 712 (922)
Q Consensus 655 ~~~~~~~g~gi~~~~~~--~---~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~v~~------------- 712 (922)
.+|.+..+ .+...++. . -+..|+++.+...... ..+...+.++++..+|.|++.+++
T Consensus 515 ~pF~s~rK-rmSviv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~~ 593 (1057)
T TIGR01652 515 LEFNSDRK-RMSVIVRNPDGRIKLLCKGADTVIFKRLSSGGNQVNEETKEHLENYASEGLRTLCIAYRELSEEEYEEWNE 593 (1057)
T ss_pred cccCCCCC-eEEEEEEeCCCeEEEEEeCcHHHHHHHhhccchhHHHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHHH
Confidence 12222222 24444432 1 2456887766543221 223345667788899999988763
Q ss_pred -------------------------CCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc--
Q 039776 713 -------------------------DGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE-- 765 (922)
Q Consensus 713 -------------------------~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~-- 765 (922)
|.+++|+++++|++|++++++|++||++|+++||+|||+.+||.++|+++|+.
T Consensus 594 ~~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~ 673 (1057)
T TIGR01652 594 EYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSR 673 (1057)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCC
Confidence 56899999999999999999999999999999999999999999999998861
Q ss_pred ------------------------------------------------------------------------eEEecCCh
Q 039776 766 ------------------------------------------------------------------------TVIAEAKP 773 (922)
Q Consensus 766 ------------------------------------------------------------------------~~~~~~~p 773 (922)
.+++|++|
T Consensus 674 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP 753 (1057)
T TIGR01652 674 NMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSP 753 (1057)
T ss_pred CCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCH
Confidence 17899999
Q ss_pred hhHHHHHHHHHHc-CCeEEEEcCCcccHHHHHhCCceEEecCC-cHHHHHhcCEEEeCCChhhHHHHH-HHHHHHHHHHH
Q 039776 774 EQKAEKVEELQAS-GYTVAMVGDGINDSPALVAADVGMAIGAG-TDIAIEAADIVLMKSNLEDEITAI-DLSRKTFSRIR 850 (922)
Q Consensus 774 ~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~~~~-~~~~~~~ad~vl~~~~~~~l~~~i-~~~r~~~~~i~ 850 (922)
+||.++|+.+|+. |+.|+|+|||.||++||++|||||++.+. ...|+.+||+++. +|+.|..++ .+||.+++|++
T Consensus 754 ~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVGIgi~g~eg~qA~~aaD~~i~--~F~~L~~lll~~GR~~~~r~~ 831 (1057)
T TIGR01652 754 SQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVGVGISGKEGMQAVMASDFAIG--QFRFLTKLLLVHGRWSYKRIS 831 (1057)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCeeeEecChHHHHHHHhhhhhhh--hHHHHHHHHHhhCHHHHHHHH
Confidence 9999999999998 99999999999999999999999988532 2368899999996 499999987 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-hhcc-cCCCCCCCHHHHHHHhhcchhhhhhhhhcccc
Q 039776 851 INYIWALGYNLLGITIAA-GAIF-PTTRFRLPPWIAGAAMATSSVSVVCSSLLLKN 904 (922)
Q Consensus 851 ~n~~~~~~~n~~~i~~a~-~~~~-~~~g~~l~p~~a~~~~~~ss~~v~~~sl~l~~ 904 (922)
+.+.|.+.-|++.+.+-+ +.++ .+.| .+|+....++....+...+.++.+..
T Consensus 832 ~~i~~~~~kn~~~~~~~~~~~~~~~~s~--~~~~~~~~l~~~n~~~t~lp~~~l~~ 885 (1057)
T TIGR01652 832 KMILYFFYKNLIFAIIQFWYSFYNGFSG--QTLYEGWYMVLYNVFFTALPVISLGV 885 (1057)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999987665543 2222 2333 34444444555555555555555533
No 29
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-63 Score=535.30 Aligned_cols=558 Identities=22% Similarity=0.297 Sum_probs=423.5
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCC
Q 039776 337 YFIGKDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPG 416 (922)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G 416 (922)
...+++|-+. ..+..+++++..+...+++.+-.....|+.-...++.|+| ||+ +.+++.+.||||||+.++.|
T Consensus 91 ~~~~~DW~DF-~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVlR---DGk---w~E~eAs~lVPGDIlsik~G 163 (942)
T KOG0205|consen 91 GGRPPDWQDF-VGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLR---DGK---WSEQEASILVPGDILSIKLG 163 (942)
T ss_pred CCCCcchhhh-hhhheeeeecceeeeeeccccchHHHHHHhccCcccEEee---cCe---eeeeeccccccCceeeeccC
Confidence 3445566554 4455566666666666777777777777776667889998 887 78999999999999999999
Q ss_pred CeeeceEEEEecc-eeeecccccCCCcccccCCCCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHH
Q 039776 417 AKVASDGYVLWGK-SYVNESMITGEAWPVAKREGDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQK 495 (922)
Q Consensus 417 ~~iPaD~~vl~g~-~~vdes~lTGEs~pv~k~~g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~ 495 (922)
++|||||++++|+ ..||+|.|||||.||.|++||.+|+||.+.+|++.++|+.||.+|+.||-..++.. ......+|+
T Consensus 164 dIiPaDaRLl~gD~LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqk 242 (942)
T KOG0205|consen 164 DIIPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQK 242 (942)
T ss_pred CEecCccceecCCccccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHH
Confidence 9999999999998 67999999999999999999999999999999999999999999999999999987 456677899
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeee-ccccchhhHHHHHHHHHHHH
Q 039776 496 FADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIA-CPCALGLATPTAVMVGTGVG 574 (922)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~-~P~~l~l~~~~~~~~~~~~~ 574 (922)
.++.+..+.+..+.+..++-+.+.+.... ...+....-+.++++. +|.|+|-.+++..+.+..++
T Consensus 243 VLt~IGn~ci~si~~g~lie~~vmy~~q~--------------R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rL 308 (942)
T KOG0205|consen 243 VLTGIGNFCICSIALGMLIEITVMYPIQH--------------RLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL 308 (942)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhhhhh--------------hhhhhhhhheheeeecccccccceeeeehhhHHHHHH
Confidence 88888887665544433333322222111 1122233445555555 99999999999999999999
Q ss_pred HHcCcEeeCchHhhhhcCccEEEecCCCcccCCceEEEE--E-EcccccCHHHHHHHHHHHH----------HHHHHHHh
Q 039776 575 ASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGKPVVVN--T-KLLKNMVLRDFYELVAATE----------AIIEYANK 641 (922)
Q Consensus 575 ~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~--~-~~~~~~~~~~~~~~~~~~e----------ai~~~~~~ 641 (922)
+++|.+.|...++|.|+.+|++|+|||||||.|+++|.+ + ...++.+.++++-.++.+. |++...+.
T Consensus 309 aqqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~d 388 (942)
T KOG0205|consen 309 SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQDAIDAAIVGMLAD 388 (942)
T ss_pred HhcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhcC
Confidence 999999999999999999999999999999999999988 5 3346777888766555433 44433222
Q ss_pred cccccCCCCCcCccceeeeecCcEEEEEc--C--eEEEEechhhhhh---CCCCCCcchHHHHHHHhccCceEEEEEECC
Q 039776 642 FREDEENPMWPEAQDFVSITGHGVKAIVR--N--KEIMVGNKSLMLD---NNIDIPPDTEEMLTETEGMAQTEILVSVDG 714 (922)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~g~gi~~~~~--~--~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 714 (922)
-++...+....+-.+|..+..+---.+.+ | .++..|.+.++.+ +..++++......+++.++|.|.+.|++..
T Consensus 389 PKeara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~~~~i~~~vh~~id~~AeRGlRSLgVArq~ 468 (942)
T KOG0205|consen 389 PKEARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNEDHDIPERVHSIIDKFAERGLRSLAVARQE 468 (942)
T ss_pred HHHHhhCceEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhccCcchHHHHHHHHHHHHhcchhhhhhhhc
Confidence 11111111111111222222222111221 1 2566788888643 456677777778888999999999998532
Q ss_pred -------------EEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc----------------
Q 039776 715 -------------ELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE---------------- 765 (922)
Q Consensus 715 -------------~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~---------------- 765 (922)
+++|+.-+.||+|.+..++|++-...|.+|.|+|||....++..++++|+-
T Consensus 469 v~e~~~~~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~ 548 (942)
T KOG0205|consen 469 VPEKTKESPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDG 548 (942)
T ss_pred cccccccCCCCCcccccccccCCCCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchhhccCCCCC
Confidence 799999999999999999999999999999999999999999999999973
Q ss_pred --------------eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCC
Q 039776 766 --------------TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSN 831 (922)
Q Consensus 766 --------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~ 831 (922)
+-|+.+.|++|.++++.||++|+.++|.|||.||+|+|+.||+||++.+++|.++.++|+|+....
T Consensus 549 ~~~~~~v~elie~adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~atdaar~asdiVltepg 628 (942)
T KOG0205|consen 549 SMPGSPVDELIEKADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPG 628 (942)
T ss_pred CCCCCcHHHHhhhccCccccCHHHHHHHHHHHhhcCceecccCCCcccchhhcccccceeeccchhhhcccccEEEcCCC
Confidence 467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhhcchhhhhhhhhccccCCCCccc
Q 039776 832 LEDEITAIDLSRKTFSRIRINYIWALGYNLLGITIAAGAIFPTTRFRLPPWIAGAAMATSSVSVVCSSLLLKNYKKPKRL 911 (922)
Q Consensus 832 ~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~~~~~~~~g~~l~p~~a~~~~~~ss~~v~~~sl~l~~~~~~~~~ 911 (922)
++.+..++..+|.+|++++....|++...+-.+ +.++.+..+.-+-++|++..+.-.+........| --+.+|+.-|
T Consensus 629 lSviI~avltSraIfqrmknytiyavsitiriv-~gfml~alIw~~df~pfmvliiailnd~t~mtis--~d~v~psp~p 705 (942)
T KOG0205|consen 629 LSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV-FGFMLIALIWEFDFSPFMVLIIAILNDGTIMTIS--KDRVKPSPTP 705 (942)
T ss_pred chhhHHHHHHHHHHHHHHhhheeeeehhHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCceEEEE--cccCCCCCCC
Confidence 999999999999999999988888766544333 2221111111234677765544433332222222 2233455566
Q ss_pred cccccccc
Q 039776 912 NNLEIHEI 919 (922)
Q Consensus 912 ~~~~~~~~ 919 (922)
++.|..+|
T Consensus 706 dswkl~~i 713 (942)
T KOG0205|consen 706 DSWKLKEI 713 (942)
T ss_pred cccchhhh
Confidence 67666554
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=8.8e-57 Score=553.36 Aligned_cols=539 Identities=17% Similarity=0.137 Sum_probs=385.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeee
Q 039776 341 KDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVA 420 (922)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iP 420 (922)
..++.+.++++++..+++++|++.|+|+++.++ ++.+++++ +|. ++++++++|+|||+|.|++||+||
T Consensus 137 ~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N------~~~~~v~~---~~~---~~~i~~~~i~vGDiv~v~~ge~iP 204 (1178)
T PLN03190 137 GASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN------NRLAWVLV---DDQ---FQEKKWKDIRVGEIIKIQANDTLP 204 (1178)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------CcEEEEEE---CCe---EEEEeHHHCCCCCEEEECCCCEee
Confidence 345667788888889999999999999998653 57889887 665 788999999999999999999999
Q ss_pred ceEEEEe-----cceeeecccccCCCcccccCCC---------------------------------------------C
Q 039776 421 SDGYVLW-----GKSYVNESMITGEAWPVAKREG---------------------------------------------D 450 (922)
Q Consensus 421 aD~~vl~-----g~~~vdes~lTGEs~pv~k~~g---------------------------------------------~ 450 (922)
|||++++ |.++||||+||||+.|+.|.++ +
T Consensus 205 aD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n 284 (1178)
T PLN03190 205 CDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSN 284 (1178)
T ss_pred eeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccc
Confidence 9999998 8899999999999999999753 2
Q ss_pred eeecCccccc-ceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCC
Q 039776 451 TVTGGTLNEN-GVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYP 529 (922)
Q Consensus 451 ~v~~Gs~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (922)
.+++|+.+.+ .++.+.|++||.+|++.+ .-...+.+.+++++.++++..+++.+.+++|+++.+....+.......
T Consensus 285 ~llRG~~LrnT~~i~GvVVYTG~dTK~~~---N~~~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~~~~~~ 361 (1178)
T PLN03190 285 IILRGCELKNTAWAIGVAVYCGRETKAML---NNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRDE 361 (1178)
T ss_pred eeeccceecCCceEEEEEEEechhhhHhh---cCCCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 2455555554 479999999999997433 333445688999999999998888777777776655432221111000
Q ss_pred ---CcccCC---------cc------chHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcC----------cEe
Q 039776 530 ---ESWIPS---------SM------DSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQG----------VLI 581 (922)
Q Consensus 530 ---~~~~~~---------~~------~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~g----------i~~ 581 (922)
..|... .. ......+...+.++-..+|.+|.+.+.++.......+.++. +.+
T Consensus 362 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~qa~~I~~D~~m~~~~~~~~~~v 441 (1178)
T PLN03190 362 LDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQC 441 (1178)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHHHHHHHHhhhhcccccCCCccee
Confidence 011100 00 00122233445566688999999999999977666665543 779
Q ss_pred eCchHhhhhcCccEEEecCCCcccCCceEEEEEEccc-----cc------------------------------------
Q 039776 582 KGGQALESTHKVNCIVFDKTGTMTIGKPVVVNTKLLK-----NM------------------------------------ 620 (922)
Q Consensus 582 k~~~~~e~l~~v~~i~~DKTGTLT~~~~~v~~~~~~~-----~~------------------------------------ 620 (922)
|+.+..|+||+|++||+|||||||+|+|.++++...+ +.
T Consensus 442 r~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1178)
T PLN03190 442 RALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSDGRTPTQNDHAGYSVEVDGKILRPKMKVKVDPQLLELSK 521 (1178)
T ss_pred ccCcchhhhccceEEEEcCCCccccceEEEEEEEECCEEcccccccchhhhhccccccccccccccccccCCHHHHhhhh
Confidence 9999999999999999999999999999999885410 00
Q ss_pred ---C------HHHHHHHHHHH---------------------------H-HHHHHHHhcccccC----------------
Q 039776 621 ---V------LRDFYELVAAT---------------------------E-AIIEYANKFREDEE---------------- 647 (922)
Q Consensus 621 ---~------~~~~~~~~~~~---------------------------e-ai~~~~~~~~~~~~---------------- 647 (922)
. ..+++...+.| | |+++.|...+....
T Consensus 522 ~~~~~~~~~~i~~fl~~lalChtv~~~~~~~~~~~~~~~~~Y~a~SPdE~ALv~~a~~~G~~l~~r~~~~i~i~~~~~~~ 601 (1178)
T PLN03190 522 SGKDTEEAKHVHDFFLALAACNTIVPIVVDDTSDPTVKLMDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGERQ 601 (1178)
T ss_pred ccccchhhHHHHHHHHHHHhcCCceeeccCCCCCccccceEEecCCCcHHHHHHHHHHCCCeEecccCCeEEEeecccee
Confidence 0 01122111111 0 55555554432100
Q ss_pred CCCCcCccceeeeecCcEEEEEcC--e---EEEEechhhhhhCCC-----CCCcchHHHHHHHhccCceEEEEE------
Q 039776 648 NPMWPEAQDFVSITGHGVKAIVRN--K---EIMVGNKSLMLDNNI-----DIPPDTEEMLTETEGMAQTEILVS------ 711 (922)
Q Consensus 648 ~~~~~~~~~~~~~~g~gi~~~~~~--~---~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~v~------ 711 (922)
........+|.+... .+...++. . -+..|+++.+.+... ...+..++.+++++++|.|++.++
T Consensus 602 ~~~il~~~pF~S~rK-rMSvIv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~l~~~a~~GlRtL~lA~k~l~~ 680 (1178)
T PLN03190 602 RFNVLGLHEFDSDRK-RMSVILGCPDKTVKVFVKGADTSMFSVIDRSLNMNVIRATEAHLHTYSSLGLRTLVVGMRELND 680 (1178)
T ss_pred cceeEEEeccccccc-EEEEEEEcCCCcEEEEEecCcHHHHHhhcccccchhHHHHHHHHHHHHhcCCceEEEEEEeCCH
Confidence 000011122333222 23334431 2 234688877654321 122334566778888999988765
Q ss_pred --------------------------------ECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Q 039776 712 --------------------------------VDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIA 759 (922)
Q Consensus 712 --------------------------------~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia 759 (922)
.|++++|+++++|++|++++++|++|+++|++++|+|||+..+|.+||
T Consensus 681 ~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA 760 (1178)
T PLN03190 681 SEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIG 760 (1178)
T ss_pred HHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
Confidence 366899999999999999999999999999999999999999999999
Q ss_pred HHhCCc--------------------------------------------------------------------------
Q 039776 760 SEVGIE-------------------------------------------------------------------------- 765 (922)
Q Consensus 760 ~~~gi~-------------------------------------------------------------------------- 765 (922)
+.+|+-
T Consensus 761 ~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVIdG~~L~~~l~~~~~~~f~ 840 (1178)
T PLN03190 761 YSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAASDPVALIIDGTSLVYVLDSELEEQLF 840 (1178)
T ss_pred HHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhccccccccccccccccccCCceEEEEEcHHHHHHhhhHHHHHHH
Confidence 855540
Q ss_pred --------eEEecCChhhHHHHHHHHHHc-CCeEEEEcCCcccHHHHHhCCceEEecC-CcHHHHHhcCEEEeCCChhhH
Q 039776 766 --------TVIAEAKPEQKAEKVEELQAS-GYTVAMVGDGINDSPALVAADVGMAIGA-GTDIAIEAADIVLMKSNLEDE 835 (922)
Q Consensus 766 --------~~~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~~~-~~~~~~~~ad~vl~~~~~~~l 835 (922)
.++||++|+||.++|+.+|+. ++.|+|+|||.||++||++|||||++.+ ....|..+||+.+ ..|..|
T Consensus 841 ~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv~mIq~AdVGIGIsG~EG~qA~~aSDfaI--~~Fr~L 918 (1178)
T PLN03190 841 QLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAM--GQFRFL 918 (1178)
T ss_pred HHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchHHHHHhcCeeeeecCchhHHHHHhhccch--hhhHHH
Confidence 268999999999999999997 5789999999999999999999998752 2337888999999 568889
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCCCCCCCHHHHHHHh-----hcchhhhhhhhh
Q 039776 836 ITAID-LSRKTFSRIRINYIWALGYNLLGITIAA--GAIFPTTRFRLPPWIAGAAM-----ATSSVSVVCSSL 900 (922)
Q Consensus 836 ~~~i~-~~r~~~~~i~~n~~~~~~~n~~~i~~a~--~~~~~~~g~~l~p~~a~~~~-----~~ss~~v~~~sl 900 (922)
.+++. .||..|+++.+.+.|.|.-|++....-+ +++..|.| .+++-...+ ..+|+.++..++
T Consensus 919 ~rLLlvHGr~~y~R~s~~i~y~fYKN~~~~~~qf~f~~~~~fSg---~~ly~~~~~~~yN~~fTslPii~~~i 988 (1178)
T PLN03190 919 VPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTCFTL---TTAINEWSSVLYSVIYTALPTIVVGI 988 (1178)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88765 7999999999999999999998665443 33333333 333322222 246666666543
No 31
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-51 Score=450.30 Aligned_cols=470 Identities=24% Similarity=0.280 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHhhCCCccCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEec
Q 039776 322 YFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEID 401 (922)
Q Consensus 322 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~ 401 (922)
|.+.+|+...|.. ++||.++.+-++++..-+.--.+||.|+-..++.+. ..|..+.|+| +++ |+.+.
T Consensus 201 FVFQVFcvgLWCL------DeyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg-~kpy~I~v~R---~kK---W~~l~ 267 (1160)
T KOG0209|consen 201 FVFQVFCVGLWCL------DEYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMG-NKPYTINVYR---NKK---WVKLM 267 (1160)
T ss_pred eeHhHHhHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEEEe---cCc---ceecc
Confidence 5566666655543 455555555555555555555667777766666653 3577888888 565 88999
Q ss_pred CCCcCCCCEEEEcC---CCeeeceEEEEecceeeecccccCCCcccccCC-------------C----CeeecCcccc--
Q 039776 402 SRLIQRNDVIKIIP---GAKVASDGYVLWGKSYVNESMITGEAWPVAKRE-------------G----DTVTGGTLNE-- 459 (922)
Q Consensus 402 ~~~l~~GDiv~v~~---G~~iPaD~~vl~g~~~vdes~lTGEs~pv~k~~-------------g----~~v~~Gs~~~-- 459 (922)
.++|.|||+|.|.. ...||||.+++.|+|.|||+||||||.|.-|.+ + ..+|+||.+.
T Consensus 268 seeLlPgDvVSI~r~~ed~~vPCDllLL~GsciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQh 347 (1160)
T KOG0209|consen 268 SEELLPGDVVSIGRGAEDSHVPCDLLLLRGSCIVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQH 347 (1160)
T ss_pred ccccCCCceEEeccCcccCcCCceEEEEecceeechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEe
Confidence 99999999999988 567999999999999999999999999999976 2 2479999875
Q ss_pred -----------cceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCC
Q 039776 460 -----------NGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSY 528 (922)
Q Consensus 460 -----------~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (922)
+|-+.+.|++||.+|..|++.+.+--..++-+.-.+ -+.+|..+.++.++++ .|+.+..-...
T Consensus 348 t~p~~~slk~pDggc~a~VlrTGFeTSQGkLvRtilf~aervTaNn~----Etf~FILFLlVFAiaA--a~Yvwv~Gskd 421 (1160)
T KOG0209|consen 348 TPPKKASLKTPDGGCVAYVLRTGFETSQGKLVRTILFSAERVTANNR----ETFIFILFLLVFAIAA--AGYVWVEGSKD 421 (1160)
T ss_pred cCCccccccCCCCCeEEEEEeccccccCCceeeeEEecceeeeeccH----HHHHHHHHHHHHHHHh--hheEEEecccC
Confidence 488999999999999999999876544333332221 1222333333333322 22222111110
Q ss_pred CCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEeeCchHhhhhcCccEEEecCCCcccCCc
Q 039776 529 PESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNCIVFDKTGTMTIGK 608 (922)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~l~~v~~i~~DKTGTLT~~~ 608 (922)
+ ..+-++.+.-++-++...+|..||+-+++++..++..++|.|++|..|-.+.-.|++|..|||||||||+..
T Consensus 422 ~-------~RsrYKL~LeC~LIlTSVvPpELPmELSmAVNsSL~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~ 494 (1160)
T KOG0209|consen 422 P-------TRSRYKLFLECTLILTSVVPPELPMELSMAVNSSLIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDD 494 (1160)
T ss_pred c-------chhhhheeeeeeEEEeccCCCCCchhhhHHHHHHHHHHHHhceeecCccccccCCceeEEEecCCCcccccc
Confidence 0 012334455677888899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEccccc---------CHHHHHHHHHHHHHHHHHHHhccccc---------------CCCCCcCc---------c
Q 039776 609 PVVVNTKLLKNM---------VLRDFYELVAATEAIIEYANKFREDE---------------ENPMWPEA---------Q 655 (922)
Q Consensus 609 ~~v~~~~~~~~~---------~~~~~~~~~~~~eai~~~~~~~~~~~---------------~~~~~~~~---------~ 655 (922)
|.|.++.-.... .+.+-....+++++++..-.++-.|. .+...++. .
T Consensus 495 lvv~Gvag~~~~~~~~~~~s~~p~~t~~vlAscHsLv~le~~lVGDPlEKA~l~~v~W~~~k~~~v~p~~~~~~~lkI~~ 574 (1160)
T KOG0209|consen 495 LVVEGVAGLSADEGALTPASKAPNETVLVLASCHSLVLLEDKLVGDPLEKATLEAVGWNLEKKNSVCPREGNGKKLKIIQ 574 (1160)
T ss_pred EEEEecccccCCcccccchhhCCchHHHHHHHHHHHHHhcCcccCChHHHHHHHhcCcccccCcccCCCcCCCcccchhh
Confidence 999988653211 12344556666666554432221110 00000000 0
Q ss_pred --ceeeeec-CcEEEEEcC-------eEEEEechhhhhhCCCCCCcchHHHHHHHhccCceEEEEEE-------------
Q 039776 656 --DFVSITG-HGVKAIVRN-------KEIMVGNKSLMLDNNIDIPPDTEEMLTETEGMAQTEILVSV------------- 712 (922)
Q Consensus 656 --~~~~~~g-~gi~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------------- 712 (922)
.|.+.-. ..+.+..++ ---..|.++.+...-.++|+++++...++.++|.|++.+++
T Consensus 575 ryhFsSaLKRmsvva~~~~~g~s~k~~~aVKGAPEvi~~ml~dvP~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd 654 (1160)
T KOG0209|consen 575 RYHFSSALKRMSVVASHQGPGSSEKYFVAVKGAPEVIQEMLRDVPKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRD 654 (1160)
T ss_pred hhhHHHHHHHHHhhhhcccCCCceEEEEEecCCHHHHHHHHHhCchhHHHHHHHHhhccceEEEEecccccccchhhhhh
Confidence 0100000 000011110 01234788887776677899999999999999999998763
Q ss_pred --------CCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc-------------------
Q 039776 713 --------DGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE------------------- 765 (922)
Q Consensus 713 --------~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~------------------- 765 (922)
|++|.|++.|.-|+|+|++++|+.|.+.+.+++|+||||+.||..+|+++||.
T Consensus 655 ~~Re~vEsdLtFaGFlif~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~ 734 (1160)
T KOG0209|consen 655 LKREDVESDLTFAGFLIFSCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLE 734 (1160)
T ss_pred hhhhhhhhcceeeeeEEEeCCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeeeccCceeeccCccCCCceee
Confidence 56999999999999999999999999999999999999999999999999982
Q ss_pred --------------------------------------------------eEEecCChhhHHHHHHHHHHcCCeEEEEcC
Q 039776 766 --------------------------------------------------TVIAEAKPEQKAEKVEELQASGYTVAMVGD 795 (922)
Q Consensus 766 --------------------------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGD 795 (922)
.+|+|+.|.||..++..+++.|+.++|+||
T Consensus 735 w~s~d~t~~lp~~p~~~~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGD 814 (1160)
T KOG0209|consen 735 WVSVDGTIVLPLKPGKKKTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGD 814 (1160)
T ss_pred EecCCCceeecCCCCccchhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecC
Confidence 589999999999999999999999999999
Q ss_pred CcccHHHHHhCCceEEecCCcH
Q 039776 796 GINDSPALVAADVGMAIGAGTD 817 (922)
Q Consensus 796 g~nD~~al~~A~vgia~~~~~~ 817 (922)
|.||+.||++||||||+-+++.
T Consensus 815 GTNDVGALK~AhVGVALL~~~~ 836 (1160)
T KOG0209|consen 815 GTNDVGALKQAHVGVALLNNPE 836 (1160)
T ss_pred CCcchhhhhhcccceehhcCCh
Confidence 9999999999999999876543
No 32
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-46 Score=400.83 Aligned_cols=482 Identities=19% Similarity=0.232 Sum_probs=349.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeee
Q 039776 341 KDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVA 420 (922)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iP 420 (922)
..|+.+..+++++.++.+.++++.|++-++..++ +.-+++. ++|. ...++++|++||+|++.++++||
T Consensus 129 ~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Ns------e~y~~lt--r~~~----~~~~Ss~i~vGDvi~v~K~~RVP 196 (1051)
T KOG0210|consen 129 STYWGPLGFVLTITLIKEAVDDLKRRRRDRELNS------EKYTKLT--RDGT----RREPSSDIKVGDVIIVHKDERVP 196 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhheeec--cCCc----ccccccccccccEEEEecCCcCC
Confidence 4578888999999999999999999887765443 3444443 2553 23389999999999999999999
Q ss_pred ceEEEEe-----cceeeecccccCCCcccccCC-----------------------------------------------
Q 039776 421 SDGYVLW-----GKSYVNESMITGEAWPVAKRE----------------------------------------------- 448 (922)
Q Consensus 421 aD~~vl~-----g~~~vdes~lTGEs~pv~k~~----------------------------------------------- 448 (922)
||.+++. |+|.+-+-.|+||+..+.|-|
T Consensus 197 ADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~Lsv 276 (1051)
T KOG0210|consen 197 ADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSV 276 (1051)
T ss_pred cceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccc
Confidence 9999995 779999999999988766633
Q ss_pred CCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCC
Q 039776 449 GDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSY 528 (922)
Q Consensus 449 g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (922)
.+.++++|++.+|.+.+.|++||.+|+..- +-..++.+-..++..++.+.+.+...++++++++... ..++
T Consensus 277 entLWanTVvAs~t~~gvVvYTG~dtRsvM---Nts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~----~g~~-- 347 (1051)
T KOG0210|consen 277 ENTLWANTVVASGTAIGVVVYTGRDTRSVM---NTSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAM----KGFG-- 347 (1051)
T ss_pred cceeeeeeeEecCcEEEEEEEecccHHHHh---ccCCcccccceeeeecccHHHHHHHHHHHHHHHHHHh----hcCC--
Confidence 367999999999999999999999996422 1112233333456667778887777777776654321 1111
Q ss_pred CCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHH----cCcEeeCchHhhhhcCccEEEecCCCcc
Q 039776 529 PESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGAS----QGVLIKGGQALESTHKVNCIVFDKTGTM 604 (922)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~----~gi~~k~~~~~e~l~~v~~i~~DKTGTL 604 (922)
+.|...+++.+.++-..+|..|-+-+-++...-...... -|.++|+...-|+||++.++.+||||||
T Consensus 348 ---------~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTGTL 418 (1051)
T KOG0210|consen 348 ---------SDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTGTL 418 (1051)
T ss_pred ---------CchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcCcc
Confidence 256677788888888888999888877776655544443 3789999999999999999999999999
Q ss_pred cCCceEEEEEEcc----cccCHHHHHHHHHHHH------------------------HHHH--HHHhccc---c-----c
Q 039776 605 TIGKPVVVNTKLL----KNMVLRDFYELVAATE------------------------AIIE--YANKFRE---D-----E 646 (922)
Q Consensus 605 T~~~~~v~~~~~~----~~~~~~~~~~~~~~~e------------------------ai~~--~~~~~~~---~-----~ 646 (922)
|+|.|.++++..- .....+++-+...+.. ++.. .|..... + +
T Consensus 419 TqNEM~~KKiHLGTv~~s~e~~~eV~~~i~s~~~~~~~~~~~~~~~~k~~~s~rv~~~V~alalCHNVTPv~e~~ge~sY 498 (1051)
T KOG0210|consen 419 TQNEMEFKKIHLGTVAYSAETMDEVSQHIQSLYTPGRNKGKGALSRVKKDMSARVRNAVLALALCHNVTPVFEDDGEVSY 498 (1051)
T ss_pred ccchheeeeeeeeeeeccHhHHHHHHHHHHHhhCCCcccccccchhhcCcccHHHHHHHHHHHHhccCCcccCCCceEEe
Confidence 9999999988532 2222222222211110 1111 1111100 0 0
Q ss_pred CCCCCc--------------------------------------Cccceeeee-cCcEEEEEc-CeE---EEEechhhhh
Q 039776 647 ENPMWP--------------------------------------EAQDFVSIT-GHGVKAIVR-NKE---IMVGNKSLML 683 (922)
Q Consensus 647 ~~~~~~--------------------------------------~~~~~~~~~-g~gi~~~~~-~~~---~~~g~~~~~~ 683 (922)
+-..+. ...+|++.. ..|+-...+ ..+ +..|... ++
T Consensus 499 QAaSPDEVAiVkwTe~VGl~L~~Rd~~~itL~~~~~~~~~yqIL~vFPFtsEtKRMGIIVr~e~~~evtfylKGAD~-VM 577 (1051)
T KOG0210|consen 499 QAASPDEVAIVKWTETVGLKLAKRDRHAITLRVPLDDELNYQILQVFPFTSETKRMGIIVRDETTEEVTFYLKGADV-VM 577 (1051)
T ss_pred ecCCCCeEEEEEeeeecceEEeecccceEEEecCCCcceeEEEEEEeccccccceeeEEEecCCCceEEEEEecchH-HH
Confidence 000000 111222221 123322222 011 2234433 33
Q ss_pred hCCCCCCcchHHHHHHHhccCceEEEEE---------------------------------------ECCEEEEEEEcCC
Q 039776 684 DNNIDIPPDTEEMLTETEGMAQTEILVS---------------------------------------VDGELTGVLSISD 724 (922)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~---------------------------------------~~~~~~G~~~~~d 724 (922)
..-+...+..++...+++++|.+++.++ .|++++|+.+.||
T Consensus 578 s~iVq~NdWleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVED 657 (1051)
T KOG0210|consen 578 SGIVQYNDWLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVED 657 (1051)
T ss_pred hcccccchhhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChHH
Confidence 3444556667777778889999999887 2568999999999
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc---------------------------------------
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE--------------------------------------- 765 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~--------------------------------------- 765 (922)
+++++++.+++.||++||++||+|||..+||..+|+..++-
T Consensus 658 kLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~S 737 (1051)
T KOG0210|consen 658 KLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGES 737 (1051)
T ss_pred HHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCch
Confidence 99999999999999999999999999999999999999982
Q ss_pred ---------------------eEEecCChhhHHHHHHHHHHc-CCeEEEEcCCcccHHHHHhCCceEEec-CCcHHHHHh
Q 039776 766 ---------------------TVIAEAKPEQKAEKVEELQAS-GYTVAMVGDGINDSPALVAADVGMAIG-AGTDIAIEA 822 (922)
Q Consensus 766 ---------------------~~~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ 822 (922)
.++||++|.||+++++.+|+. |++|++||||-||+.|+++||+||++- .....|.-+
T Consensus 738 l~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~A~~GiGI~gkEGkQASLA 817 (1051)
T KOG0210|consen 738 LEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQAADVGIGIVGKEGKQASLA 817 (1051)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheeecccceeeecccccccchh
Confidence 688999999999999999985 899999999999999999999999985 455677789
Q ss_pred cCEEEeCCChhhHHHHHHH-HHHHHHHHHHHHHH
Q 039776 823 ADIVLMKSNLEDEITAIDL-SRKTFSRIRINYIW 855 (922)
Q Consensus 823 ad~vl~~~~~~~l~~~i~~-~r~~~~~i~~n~~~ 855 (922)
||+.+. .|+.+-+++.+ ||..|++-.+--+|
T Consensus 818 ADfSIt--qF~Hv~rLLl~HGR~SYkrsa~laqf 849 (1051)
T KOG0210|consen 818 ADFSIT--QFSHVSRLLLWHGRNSYKRSAKLAQF 849 (1051)
T ss_pred ccccHH--HHHHHHHHhhccccchHHHHHHHHHH
Confidence 999984 58888887665 99999987665554
No 33
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=2.7e-43 Score=418.04 Aligned_cols=509 Identities=17% Similarity=0.178 Sum_probs=372.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeec
Q 039776 342 DFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVAS 421 (922)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPa 421 (922)
....+.++++.+..+++.+|++.|+++++.++. .++.|.+. ++. ..+..+++|++||+|.+..+|.+||
T Consensus 82 ~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN~------~~~~v~~~--~~~---~~~~~wk~~~vGd~v~v~~~~~~pa 150 (1151)
T KOG0206|consen 82 TTLVPLLFVLGITAIKDAIEDYRRHKQDKEVNN------RKVEVLRG--DGC---FVEKKWKDVRVGDIVRVEKDEFVPA 150 (1151)
T ss_pred ceeeceeeeehHHHHHHHHhhhhhhhccHHhhc------ceeEEecC--Cce---eeeeccceeeeeeEEEeccCCcccc
Confidence 344556777788899999999999999886654 67888862 222 5788999999999999999999999
Q ss_pred eEEEEe-----cceeeecccccCCCcccccCC-----------------------------------------------C
Q 039776 422 DGYVLW-----GKSYVNESMITGEAWPVAKRE-----------------------------------------------G 449 (922)
Q Consensus 422 D~~vl~-----g~~~vdes~lTGEs~pv~k~~-----------------------------------------------g 449 (922)
|.++++ |.|+|++++|+||+..+.|+. .
T Consensus 151 D~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~ 230 (1151)
T KOG0206|consen 151 DLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPD 230 (1151)
T ss_pred ceEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeeccCCCCCcHH
Confidence 999996 559999999999999888753 1
Q ss_pred CeeecCccccc-ceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcC-C
Q 039776 450 DTVTGGTLNEN-GVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFH-S 527 (922)
Q Consensus 450 ~~v~~Gs~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 527 (922)
+.++.|+.+.+ ..+.+.|+.+|.+|++.+-. ..++.+++++++..++....++++.++++++..+...++.... .
T Consensus 231 ~~Llrg~~lrNT~~v~G~vv~tG~dtK~~~n~---~~~~~Krs~ier~~n~~i~~~~~~l~~~~~~~~i~~~~~~~~~~~ 307 (1151)
T KOG0206|consen 231 NLLLRGSRLRNTEWVYGVVVFTGHDTKLMQNS---GKPPSKRSRIERKMNKIIILLFVLLILMCLISAIGFAIWTRQDGR 307 (1151)
T ss_pred HcccCCceeccCcEEEEEEEEcCCcchHHHhc---CCCccccchhhhhhhhhHHHHHHHHHHHHHHHHhhhheeeeeccc
Confidence 23567777776 57889999999999776543 3577788999999999888877777777776655433322211 1
Q ss_pred C-CCcccCCcc---chHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHH----------HcCcEeeCchHhhhhcCc
Q 039776 528 Y-PESWIPSSM---DSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGA----------SQGVLIKGGQALESTHKV 593 (922)
Q Consensus 528 ~-~~~~~~~~~---~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~----------~~gi~~k~~~~~e~l~~v 593 (922)
. +..|.-... ......+..++.++...+|..|.+++.+.......... .....+|+.+..|+||++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my~~e~d~~~~~rtsnl~eeLGqv 387 (1151)
T KOG0206|consen 308 HNGEWWYLSPSEAAYAGFVHFLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMYDEETDTPAQARTSNLNEELGQV 387 (1151)
T ss_pred ccCchhhhcCchHHHHHHHHHHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhhhccCCCccccccCCchhhhcce
Confidence 1 112221111 12344556677778888999999999988777664432 347789999999999999
Q ss_pred cEEEecCCCcccCCceEEEEEEcccc-----c------------------------------------------CHHHHH
Q 039776 594 NCIVFDKTGTMTIGKPVVVNTKLLKN-----M------------------------------------------VLRDFY 626 (922)
Q Consensus 594 ~~i~~DKTGTLT~~~~~v~~~~~~~~-----~------------------------------------------~~~~~~ 626 (922)
++|+.|||||||+|.|.+.+|...+. . ...++.
T Consensus 388 ~yIfSDKTGTLT~N~M~F~kCsi~g~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~f~ 467 (1151)
T KOG0206|consen 388 EYIFSDKTGTLTQNSMEFKKCSINGTSYGRNVTEVEAALAKRSGGDVNEHKIKGFTFEDSRLVDGLWSSEPQAEDILEFF 467 (1151)
T ss_pred eEEEEcCcCccccceeeeecccccCcccccCCChhhcccCccccccccccccccceeccchhhccccccccCcchHHHHh
Confidence 99999999999999999998754210 0 001222
Q ss_pred HHHHHHH-----------------------HHHHHHHhcccccCCCC----------------CcCccceeeeecCcEEE
Q 039776 627 ELVAATE-----------------------AIIEYANKFREDEENPM----------------WPEAQDFVSITGHGVKA 667 (922)
Q Consensus 627 ~~~~~~e-----------------------ai~~~~~~~~~~~~~~~----------------~~~~~~~~~~~g~gi~~ 667 (922)
.+.+.++ |+++.|++++....... .....+|.+. .+.++.
T Consensus 468 ~~la~chtv~~e~~~~~~~~~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~~~~y~lL~iLeF~S~-RKRMSV 546 (1151)
T KOG0206|consen 468 RALALCHTVIPEKDEDSGKLSYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGVEETYELLNVLEFNST-RKRMSV 546 (1151)
T ss_pred hHHhccceeeeccCCCccceeeecCCCcHHHHHHHHHhcCceeeeccCceEEEeccccceeEEEEEEeccccc-cceeEE
Confidence 2222221 67777776543221100 0011112221 122334
Q ss_pred EEcCe--E---EEEechhhhhhC----CCCCCcchHHHHHHHhccCceEEEEE---------------------------
Q 039776 668 IVRNK--E---IMVGNKSLMLDN----NIDIPPDTEEMLTETEGMAQTEILVS--------------------------- 711 (922)
Q Consensus 668 ~~~~~--~---~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~v~--------------------------- 711 (922)
+++.. + +..|+...+.+. +-...+..++++++++.+|.|++++|
T Consensus 547 IVR~p~g~i~LycKGADsvI~erL~~~~~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l~e~eY~~w~~~~~~A~ts~~~Re 626 (1151)
T KOG0206|consen 547 IVRDPDGRILLYCKGADSVIFERLSKNGEKLREKTQEHLEEYATEGLRTLCLAYRELDEEEYEEWNERYNEAKTSLTDRE 626 (1151)
T ss_pred EEEcCCCcEEEEEcCcchhhHhhhhhcchHHHHHHHHHHHHHHhhhhhHhhhhhhccCHHHHHHHHHHHHHHHhhccCHH
Confidence 44321 1 234555544332 12223334567788889999998876
Q ss_pred -----------ECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc---------------
Q 039776 712 -----------VDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE--------------- 765 (922)
Q Consensus 712 -----------~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~--------------- 765 (922)
.|+.++|..++||+++++++++|+.|+++|||+||+|||..+||..|+..|++.
T Consensus 627 ~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~~m~~i~i~~~~~~ 706 (1151)
T KOG0206|consen 627 ELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQDMKLIIINTETSE 706 (1151)
T ss_pred HHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCCCCceEEEEecCChh
Confidence 366999999999999999999999999999999999999999999999888761
Q ss_pred -----------------------------------------------------------------eEEecCChhhHHHHH
Q 039776 766 -----------------------------------------------------------------TVIAEAKPEQKAEKV 780 (922)
Q Consensus 766 -----------------------------------------------------------------~~~~~~~p~~K~~~v 780 (922)
.++||++|.||+.++
T Consensus 707 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~la~~C~sViCCR~sPlQKA~Vv 786 (1151)
T KOG0206|consen 707 ELSSLDATAALKETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFLELAKRCKSVICCRVSPLQKALVV 786 (1151)
T ss_pred hhcchhhHHHHHHHHHHhhhHHHHHHhhccCcCCceEEEECHHHHhhhCchhhHHHHHHHHhcCEEEEccCCHHHHHHHH
Confidence 578999999999999
Q ss_pred HHHHH-cCCeEEEEcCCcccHHHHHhCCceEEecC-CcHHHHHhcCEEEeCCChhhHHHH-HHHHHHHHHHHHHHHHHHH
Q 039776 781 EELQA-SGYTVAMVGDGINDSPALVAADVGMAIGA-GTDIAIEAADIVLMKSNLEDEITA-IDLSRKTFSRIRINYIWAL 857 (922)
Q Consensus 781 ~~l~~-~g~~v~~vGDg~nD~~al~~A~vgia~~~-~~~~~~~~ad~vl~~~~~~~l~~~-i~~~r~~~~~i~~n~~~~~ 857 (922)
+..++ .+..+++||||.||++|++.|||||++++ ....|..++|+.+.. |.-+.++ +-+||..|.++.+.+.+.|
T Consensus 787 ~lVk~~~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~EGmQAvmsSD~AIaq--FrfL~rLLLVHGhW~Y~R~a~~ilyfF 864 (1151)
T KOG0206|consen 787 KLVKKGLKAVTLAIGDGANDVSMIQEAHVGVGISGQEGMQAVMSSDFAIAQ--FRFLERLLLVHGHWSYIRLAKMILYFF 864 (1151)
T ss_pred HHHHhcCCceEEEeeCCCccchheeeCCcCeeeccchhhhhhhcccchHHH--HHHHhhhheeecceeHHHHHHHHHHHH
Confidence 99974 47889999999999999999999999984 456677789988854 5555543 4569999999999999999
Q ss_pred HHHHHHHHHH
Q 039776 858 GYNLLGITIA 867 (922)
Q Consensus 858 ~~n~~~i~~a 867 (922)
..|+.....-
T Consensus 865 YKNi~f~~~~ 874 (1151)
T KOG0206|consen 865 YKNIAFTFTL 874 (1151)
T ss_pred HHHHHHHHHH
Confidence 9999866543
No 34
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=1.3e-35 Score=310.55 Aligned_cols=223 Identities=27% Similarity=0.510 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCe-EEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEe
Q 039776 349 MLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEA-ATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLW 427 (922)
Q Consensus 349 ~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~-~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~ 427 (922)
+++++++++.+++.++++|+++.++++.+..+++ ++|+| ||+ ++++++++|+|||+|++++||++||||+|++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r---~~~---~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~ 74 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIR---DGR---WQKIPSSELVPGDIIILKAGDIVPADGILLE 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEE---TTE---EEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEe---ccc---cccchHhhccceeeeecccccccccCcccee
Confidence 3677888999999999999999999999988887 88888 776 8899999999999999999999999999999
Q ss_pred -cceeeecccccCCCcccccC-----CCCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHh
Q 039776 428 -GKSYVNESMITGEAWPVAKR-----EGDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRAS 501 (922)
Q Consensus 428 -g~~~vdes~lTGEs~pv~k~-----~g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~ 501 (922)
|.+.||||.+|||+.|+.|. +|+.+|+||.+.+|++.++|++||.+|..+++.+.+.+.+.+++++++..+++.
T Consensus 75 ~g~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00122_consen 75 SGSAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIA 154 (230)
T ss_dssp SSEEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999888888899999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHHHHHHHHHcCcEe
Q 039776 502 KYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLI 581 (922)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~~~~~~~~~gi~~ 581 (922)
.++++++++++++++++|++... ..++...+..++++++.+|||+|++++|+++..+..+++++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v 222 (230)
T PF00122_consen 155 KILIIIILAIAILVFIIWFFNDS------------GISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIV 222 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCHTGST------------TCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHhcccccchhhhccceeccc------------ccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEE
Confidence 99999999988888776655210 125667788999999999999999999999999999999999999
Q ss_pred eCchHhhh
Q 039776 582 KGGQALES 589 (922)
Q Consensus 582 k~~~~~e~ 589 (922)
|+++++|+
T Consensus 223 ~~~~a~E~ 230 (230)
T PF00122_consen 223 KNLSALEA 230 (230)
T ss_dssp SSTTHHHH
T ss_pred eCcccccC
Confidence 99999995
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.93 E-value=1.3e-25 Score=232.94 Aligned_cols=200 Identities=36% Similarity=0.516 Sum_probs=160.6
Q ss_pred ccEEEecCCCcccCCceEEEEEEcccccCHHHHHHHHHHHH---------HHHHHHHhcccccCCCCCcCccceeeeecC
Q 039776 593 VNCIVFDKTGTMTIGKPVVVNTKLLKNMVLRDFYELVAATE---------AIIEYANKFREDEENPMWPEAQDFVSITGH 663 (922)
Q Consensus 593 v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~e---------ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 663 (922)
+++||||||||||+|++.+ .. .....++.++...+ ++..++...... .. ..++....|.
T Consensus 1 i~~i~fDktGTLt~~~~~v---~~---~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~ 68 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---AP---PSNEAALAIAAALEQGSEHPIGKAIVEFAKNHQWS-KS-----LESFSEFIGR 68 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---ES---CSHHHHHHHHHHHHCTSTSHHHHHHHHHHHHHHHH-SC-----CEEEEEETTT
T ss_pred CeEEEEecCCCcccCeEEE---Ee---ccHHHHHHHHHHhhhcCCCcchhhhhhhhhhccch-hh-----hhhheeeeec
Confidence 5899999999999999999 11 45666777776653 555555442211 11 5778889999
Q ss_pred cEEEEEcCeEEEEechhhhhhCCCCCCcchHHHHHHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCE
Q 039776 664 GVKAIVRNKEIMVGNKSLMLDNNIDIPPDTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIR 743 (922)
Q Consensus 664 gi~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~ 743 (922)
|+.+.+++. +. |+.+++....... .............+...+.++.++.++|.+.+.|++||+++++|++|+++|++
T Consensus 69 ~~~~~~~~~-~~-g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~L~~~Gi~ 145 (215)
T PF00702_consen 69 GISGDVDGI-YL-GSPEWIHELGIRV-ISPDLVEEIQESQGRTVIVLAVNLIFLGLFGLRDPLRPGAKEALQELKEAGIK 145 (215)
T ss_dssp EEEEEEHCH-EE-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCEEEEESHEEEEEEEEEEEBHTTHHHHHHHHHHTTEE
T ss_pred ccccccccc-cc-ccchhhhhccccc-cccchhhhHHHhhCCcccceeecCeEEEEEeecCcchhhhhhhhhhhhccCcc
Confidence 999999887 44 8888776543321 01111222234456677888889999999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHhCCce--EEecC--ChhhH--HHHHHHHHHcCCeEEEEcCCcccHHHHHhCC
Q 039776 744 SILVTGDNWGTAKSIASEVGIET--VIAEA--KPEQK--AEKVEELQASGYTVAMVGDGINDSPALVAAD 807 (922)
Q Consensus 744 ~~~~tgd~~~~a~~ia~~~gi~~--~~~~~--~p~~K--~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~ 807 (922)
++|+|||+..++..+++++||.. ++++. +|++| .++++.|+.+++.|+|||||.||++|+++||
T Consensus 146 ~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 146 VAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGGHHHHHHHSS
T ss_pred eeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEccCHHHHHHHHhCc
Confidence 99999999999999999999987 99999 99999 9999999977779999999999999999997
No 36
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.62 E-value=3.8e-15 Score=130.37 Aligned_cols=123 Identities=30% Similarity=0.406 Sum_probs=109.3
Q ss_pred ECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc--eEEecCChhhHHHHHHHHHHcCCe
Q 039776 712 VDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE--TVIAEAKPEQKAEKVEELQASGYT 789 (922)
Q Consensus 712 ~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~--~~~~~~~p~~K~~~v~~l~~~g~~ 789 (922)
.-+++.+.++-.-++-++++++|++|++. +++++.|||...+..+.|+..||+ .+++...|+.|.++++.|++++++
T Consensus 17 ~~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k 95 (152)
T COG4087 17 KAGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEK 95 (152)
T ss_pred ecceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcE
Confidence 44678888999999999999999999999 999999999999999999999997 688899999999999999999999
Q ss_pred EEEEcCCcccHHHHHhCCceEEe-c--CCcHHHHHhcCEEEeCCChhhHHH
Q 039776 790 VAMVGDGINDSPALVAADVGMAI-G--AGTDIAIEAADIVLMKSNLEDEIT 837 (922)
Q Consensus 790 v~~vGDg~nD~~al~~A~vgia~-~--~~~~~~~~~ad~vl~~~~~~~l~~ 837 (922)
|.|||||.||.+||+.||+||.. + +..+.+.++||+++- +...+.+
T Consensus 96 ~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik--~i~e~ld 144 (152)
T COG4087 96 VVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLK--EIAEILD 144 (152)
T ss_pred EEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhh--hHHHHHH
Confidence 99999999999999999999865 3 356778899999984 3444443
No 37
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.55 E-value=2e-13 Score=156.68 Aligned_cols=135 Identities=36% Similarity=0.554 Sum_probs=125.3
Q ss_pred cCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCcccccccccccccceeeeecCCC
Q 039776 77 KKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIPISTGEDIVSKIHLHLDGLY 156 (922)
Q Consensus 77 ~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~~~i~gm~ 156 (922)
.||+|..|...+++++...+|+.+..+++.++++.+.|+ ...+++.+.+.+++.||++.....+........+.+.||+
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~-~~~~~~~i~~~ied~gf~~~~~~~~~~~~~~~~l~v~Gmt 79 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD-NIVSPESIKETIEDMGFEASLLSDSEITASKCYLSVNGMT 79 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe-eccCHHHHHHHhhcccceeeecccCccccceeEEEecCce
Confidence 489999999999999999999999999999999999999 8889999999999999999876655554557899999999
Q ss_pred chhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhCCCCcccc
Q 039776 157 TDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTASGHFKAR 215 (922)
Q Consensus 157 c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~a~ 215 (922)
|++|...+|+.+++.+||.++.+.+..+.+.+.|||..++++.+.+.+++.| |.+.
T Consensus 80 C~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~g---f~a~ 135 (951)
T KOG0207|consen 80 CASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLG---FSAE 135 (951)
T ss_pred eHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcC---ccce
Confidence 9999999999999999999999999999999999999999999999999887 5544
No 38
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.21 E-value=8.3e-11 Score=107.52 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=98.8
Q ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHc----CCeEEEEcCCcccHHHHHhCC
Q 039776 732 GVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQAS----GYTVAMVGDGINDSPALVAAD 807 (922)
Q Consensus 732 ~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~ 807 (922)
..|+.|.+.|+++.++||++...++.-|+.+||.++|-.. ++|....+.|.++ .+.|+++||..||.|+|+..+
T Consensus 42 ~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~--~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vG 119 (170)
T COG1778 42 HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGI--SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVG 119 (170)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeech--HhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcC
Confidence 3567889999999999999999999999999999999886 6788877777664 457999999999999999999
Q ss_pred ceEEecCCcHHHHHhcCEEEeCCC----hhhHHHHHHHHHHHHHHH
Q 039776 808 VGMAIGAGTDIAIEAADIVLMKSN----LEDEITAIDLSRKTFSRI 849 (922)
Q Consensus 808 vgia~~~~~~~~~~~ad~vl~~~~----~~~l~~~i~~~r~~~~~i 849 (922)
+++++.++.+..++.||+|+.... ...+.++|..++..+...
T Consensus 120 ls~a~~dAh~~v~~~a~~Vt~~~GG~GAvREv~dlil~aq~~~d~~ 165 (170)
T COG1778 120 LSVAVADAHPLLKQRADYVTSKKGGEGAVREVCDLILQAQGKLDEA 165 (170)
T ss_pred CcccccccCHHHHHhhHhhhhccCcchHHHHHHHHHHHccCcHHHH
Confidence 999999999999999999998754 556667777666655443
No 39
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.14 E-value=2.6e-10 Score=115.51 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=99.4
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEe--------c-------CChhhHHHHHHHHHHcCCe
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIA--------E-------AKPEQKAEKVEELQASGYT 789 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~--------~-------~~p~~K~~~v~~l~~~g~~ 789 (922)
+++|++.+.|+.||+.| ++.++||.....+..+++++|++.+++ + ..++.|..+++.+++.|..
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~~ 146 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYR 146 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCCC
Confidence 58999999999999975 999999999999999999999987665 1 3467899999999888888
Q ss_pred EEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHH
Q 039776 790 VAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLS 842 (922)
Q Consensus 790 v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 842 (922)
+.|+|||.||.+|++.||+||++.. .+..+++||-.-.-.+.+.+..++.++
T Consensus 147 ~v~vGDs~nDl~ml~~Ag~~ia~~a-k~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 147 VIAAGDSYNDTTMLSEAHAGILFHA-PENVIREFPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEecC-CHHHHHhCCCCCcccCHHHHHHHHHHH
Confidence 9999999999999999999999975 455556666555557888888888776
No 40
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.13 E-value=3.6e-07 Score=113.24 Aligned_cols=128 Identities=25% Similarity=0.472 Sum_probs=101.6
Q ss_pred CCchhHHHHHHHHhhcCCCeeEEEEEecCCeEEEEEcCCCCCHHHHHHHHHccCccccccCCcc------c---------
Q 039776 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLVPGET------I--------- 65 (922)
Q Consensus 1 m~C~~C~~~i~~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~gy~~~~~~~~~------~--------- 65 (922)
|+|++|+.++++++++++||..+.+++. +.++.. ..+.+++.++++++||++....++. .
T Consensus 12 mtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~---~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (834)
T PRK10671 12 LSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTG---TASAEALIETIKQAGYDASVSHPKAKPLTESSIPSEALTAA 86 (834)
T ss_pred cccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEe---cCCHHHHHHHHHhcCCcccccccccccccccccCchhhhhh
Confidence 8999999999999999999999999994 445543 2467899999999999986532100 0
Q ss_pred --------cccceEEEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCccc
Q 039776 66 --------EKSTQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAI 136 (922)
Q Consensus 66 --------~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~ 136 (922)
.....+..+.++||+|.+|+..+++.+.+.+|+.++.+++.+++..+.+ ..+.+.+.+.++..||.+.
T Consensus 87 ~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I~~~Gy~a~ 162 (834)
T PRK10671 87 SEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAVEKAGYGAE 162 (834)
T ss_pred hhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHHHhcCCCcc
Confidence 0001246788999999999999999999999999999999999887763 2356777788888888753
No 41
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.11 E-value=4.9e-10 Score=121.29 Aligned_cols=115 Identities=21% Similarity=0.363 Sum_probs=101.2
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec-----------------CChhhHHHHHHHHHHc-
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE-----------------AKPEQKAEKVEELQAS- 786 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~- 786 (922)
++.|++.+.++.|++.|+++.++||.....+..+.+++|++.++++ +..+.|.+.++.+.++
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~l 260 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEY 260 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHc
Confidence 5899999999999999999999999998889999999999875541 1346799888888764
Q ss_pred C---CeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHH
Q 039776 787 G---YTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAID 840 (922)
Q Consensus 787 g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 840 (922)
| +.+.++|||.||.+|++.|++||+| ++.+..++.||.++...++.++..++.
T Consensus 261 gi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nAkp~Vk~~Ad~~i~~~~l~~~l~~~~ 316 (322)
T PRK11133 261 EIPLAQTVAIGDGANDLPMIKAAGLGIAY-HAKPKVNEQAQVTIRHADLMGVLCILS 316 (322)
T ss_pred CCChhhEEEEECCHHHHHHHHHCCCeEEe-CCCHHHHhhCCEEecCcCHHHHHHHhc
Confidence 3 6799999999999999999999999 888999999999999889999887764
No 42
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.06 E-value=2.2e-09 Score=104.10 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=92.3
Q ss_pred CCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHc----CC
Q 039776 713 DGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQAS----GY 788 (922)
Q Consensus 713 ~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~----g~ 788 (922)
+++.++.+.+.|. .++++|++.|+++.++||++...+..+.+++|+..++... ..|.+.+..+.++ .+
T Consensus 22 ~~~~~~~~~~~~~------~~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~--~~k~~~~~~~~~~~~~~~~ 93 (154)
T TIGR01670 22 NGEEIKAFNVRDG------YGIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQ--SNKLIAFSDILEKLALAPE 93 (154)
T ss_pred CCcEEEEEechhH------HHHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecc--cchHHHHHHHHHHcCCCHH
Confidence 3445555544443 2899999999999999999999999999999999888764 4566666665442 46
Q ss_pred eEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChh
Q 039776 789 TVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLE 833 (922)
Q Consensus 789 ~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~ 833 (922)
.++|+||+.||.+|++.|++++++.++.+..+..||+++.++.-+
T Consensus 94 ~~~~vGDs~~D~~~~~~ag~~~~v~~~~~~~~~~a~~i~~~~~~~ 138 (154)
T TIGR01670 94 NVAYIGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGR 138 (154)
T ss_pred HEEEECCCHHHHHHHHHCCCeEecCCcCHHHHHhCCEEecCCCCC
Confidence 799999999999999999999999998889999999999766533
No 43
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.01 E-value=1.1e-09 Score=88.32 Aligned_cols=60 Identities=23% Similarity=0.499 Sum_probs=57.9
Q ss_pred eeeecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhC
Q 039776 149 HLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTA 208 (922)
Q Consensus 149 ~~~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g 208 (922)
+|.++||+|++|++++++.|.++|||.++.+|+.++++.|.|++..++++++.+.+++.|
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 478999999999999999999999999999999999999999999889999999999998
No 44
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.00 E-value=1.3e-09 Score=87.87 Aligned_cols=62 Identities=34% Similarity=0.701 Sum_probs=59.2
Q ss_pred EEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCc
Q 039776 73 RIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFE 134 (922)
Q Consensus 73 ~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~ 134 (922)
+++|+||+|++|+.+++++|.+++||.++.+|+.++++.+.|+++..+++++.+.+++.||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 47899999999999999999999999999999999999999999888899999999999984
No 45
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.00 E-value=3.1e-09 Score=114.20 Aligned_cols=132 Identities=22% Similarity=0.307 Sum_probs=100.4
Q ss_pred eEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc--------------------
Q 039776 706 TEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE-------------------- 765 (922)
Q Consensus 706 ~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~-------------------- 765 (922)
+.+++-.||+++.- ...+.+...++|++|+++|++++++||++...+..+.+++|++
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~~~~ 80 (270)
T PRK10513 4 KLIAIDMDGTLLLP---DHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKAADG 80 (270)
T ss_pred EEEEEecCCcCcCC---CCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEECCCC
Confidence 44566778888852 3468899999999999999999999999999999999999851
Q ss_pred ---------------------------------eEEec----------------C-----------------------Ch
Q 039776 766 ---------------------------------TVIAE----------------A-----------------------KP 773 (922)
Q Consensus 766 ---------------------------------~~~~~----------------~-----------------------~p 773 (922)
..+.. . .+
T Consensus 81 ~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (270)
T PRK10513 81 ETVAQTALSYDDYLYLEKLSREVGVHFHALDRNTLYTANRDISYYTVHESFLTGIPLVFREVEKMDPNLQFPKVMMIDEP 160 (270)
T ss_pred CEEEecCCCHHHHHHHHHHHHHcCCcEEEEECCEEEEecCCcchhHHHhhhhccCCccccchhhccccCCceEEEEeCCH
Confidence 00100 0 00
Q ss_pred hhHHHHHHHHH----------------------------------Hc----CCeEEEEcCCcccHHHHHhCCceEEecCC
Q 039776 774 EQKAEKVEELQ----------------------------------AS----GYTVAMVGDGINDSPALVAADVGMAIGAG 815 (922)
Q Consensus 774 ~~K~~~v~~l~----------------------------------~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~ 815 (922)
+...++.+.+. +. .+.|+++|||.||.+||+.|++|+||+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA 240 (270)
T PRK10513 161 EILDAAIARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA 240 (270)
T ss_pred HHHHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc
Confidence 00011111121 10 13699999999999999999999999999
Q ss_pred cHHHHHhcCEEEeCCChhhHHHHHH
Q 039776 816 TDIAIEAADIVLMKSNLEDEITAID 840 (922)
Q Consensus 816 ~~~~~~~ad~vl~~~~~~~l~~~i~ 840 (922)
.+.+|+.||+|..+++-.++..+++
T Consensus 241 ~~~vK~~A~~vt~~n~~dGva~~i~ 265 (270)
T PRK10513 241 IPSVKEVAQFVTKSNLEDGVAFAIE 265 (270)
T ss_pred cHHHHHhcCeeccCCCcchHHHHHH
Confidence 9999999999998888888888775
No 46
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.97 E-value=3.3e-09 Score=103.55 Aligned_cols=101 Identities=22% Similarity=0.238 Sum_probs=85.5
Q ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHH----cCCeEEEEcCCcccHHHHHhCC
Q 039776 732 GVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQA----SGYTVAMVGDGINDSPALVAAD 807 (922)
Q Consensus 732 ~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~ 807 (922)
..|+.|++.|+++.++|+.+...+....+.+|+..++....| |.+.++.+.+ ..+.++++||+.||.+|++.|+
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~kp--kp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag 118 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGIKK--KTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVG 118 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecCCC--CHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCC
Confidence 678999999999999999999999999999999988877643 3444444333 3467999999999999999999
Q ss_pred ceEEecCCcHHHHHhcCEEEeCCChhh
Q 039776 808 VGMAIGAGTDIAIEAADIVLMKSNLED 834 (922)
Q Consensus 808 vgia~~~~~~~~~~~ad~vl~~~~~~~ 834 (922)
++++|+++.+..++.|++|...++-.+
T Consensus 119 ~~~am~nA~~~lk~~A~~I~~~~~~~g 145 (169)
T TIGR02726 119 LAVAVGDAVADVKEAAAYVTTARGGHG 145 (169)
T ss_pred CeEECcCchHHHHHhCCEEcCCCCCCC
Confidence 999999999999999999987655443
No 47
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.97 E-value=5e-09 Score=109.64 Aligned_cols=131 Identities=29% Similarity=0.332 Sum_probs=101.6
Q ss_pred eEEEEEECCEEEEEEEcCC-CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce------------------
Q 039776 706 TEILVSVDGELTGVLSISD-PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET------------------ 766 (922)
Q Consensus 706 ~~l~v~~~~~~~G~~~~~d-~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~------------------ 766 (922)
+.++.-.||+++- .| .+.+.+.++|++|++.|++++++||++...+..+.+.+|++.
T Consensus 4 kli~~DlDGTLl~----~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~ 79 (230)
T PRK01158 4 KAIAIDIDGTITD----KDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKR 79 (230)
T ss_pred eEEEEecCCCcCC----CCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEcCCCCE
Confidence 3566677888873 33 378999999999999999999999999999999999999840
Q ss_pred -------------------------EEe------------------------------------------cCChh--hHH
Q 039776 767 -------------------------VIA------------------------------------------EAKPE--QKA 777 (922)
Q Consensus 767 -------------------------~~~------------------------------------------~~~p~--~K~ 777 (922)
.+. ++.|. .|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg 159 (230)
T PRK01158 80 IFLGDIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKG 159 (230)
T ss_pred EEEcchHHHHHHHHHHHHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChH
Confidence 000 00111 133
Q ss_pred HHHHHHHHc----CCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHH
Q 039776 778 EKVEELQAS----GYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAID 840 (922)
Q Consensus 778 ~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 840 (922)
.-++.+.+. ...++++||+.||.+|++.|++|++|+++.+.+|+.||+|..+++-.++.++++
T Consensus 160 ~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~~a~~v~~~n~~~Gv~~~l~ 226 (230)
T PRK01158 160 TGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANADEELKEAADYVTEKSYGEGVAEAIE 226 (230)
T ss_pred HHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCccHHHHHhcceEecCCCcChHHHHHH
Confidence 333333321 236999999999999999999999999999999999999998888888888775
No 48
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.97 E-value=4.2e-09 Score=108.91 Aligned_cols=129 Identities=25% Similarity=0.238 Sum_probs=101.5
Q ss_pred EEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc---------------------
Q 039776 707 EILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE--------------------- 765 (922)
Q Consensus 707 ~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~--------------------- 765 (922)
.++.-.||+++. =...+.++..++|++|++.|++++++||++...+..++++++++
T Consensus 3 ~v~~DlDGTLl~---~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~~ 79 (215)
T TIGR01487 3 LVAIDIDGTLTE---PNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLA 79 (215)
T ss_pred EEEEecCCCcCC---CCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEEe
Confidence 455667888874 23358899999999999999999999999999999999999984
Q ss_pred ----------------------------------------------------eE----EecCC--hhhHHHHHHHHHHc-
Q 039776 766 ----------------------------------------------------TV----IAEAK--PEQKAEKVEELQAS- 786 (922)
Q Consensus 766 ----------------------------------------------------~~----~~~~~--p~~K~~~v~~l~~~- 786 (922)
.+ +..+. .-+|...++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~ 159 (215)
T TIGR01487 80 NMEEEWFLDEEKKKRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELL 159 (215)
T ss_pred cccchhhHHHhhhhhhhhhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHh
Confidence 00 00111 12455555555442
Q ss_pred ---CCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHH
Q 039776 787 ---GYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITA 838 (922)
Q Consensus 787 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~ 838 (922)
...++++||+.||.+|++.|+.|++|+++.+.+++.||+|..+++-.++.++
T Consensus 160 ~i~~~~~i~iGDs~ND~~ml~~ag~~vam~na~~~~k~~A~~v~~~~~~~Gv~~~ 214 (215)
T TIGR01487 160 GIKPEEVAAIGDSENDIDLFRVVGFKVAVANADDQLKEIADYVTSNPYGEGVVEV 214 (215)
T ss_pred CCCHHHEEEECCCHHHHHHHHhCCCeEEcCCccHHHHHhCCEEcCCCCCchhhhh
Confidence 2359999999999999999999999999999999999999987777777654
No 49
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.95 E-value=4.5e-09 Score=112.93 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=98.6
Q ss_pred EEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc---------------------
Q 039776 707 EILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE--------------------- 765 (922)
Q Consensus 707 ~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~--------------------- 765 (922)
.+++-.||+++. -...+.+..+++|++|+++|++++++||++...+..+.+++|++
T Consensus 4 li~~DlDGTLl~---~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~~~~~~~l~~ 80 (272)
T PRK15126 4 LAAFDMDGTLLM---PDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVHSLEGELLHR 80 (272)
T ss_pred EEEEeCCCcCcC---CCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEEcCCCCEEEe
Confidence 455667888874 23468999999999999999999999999999999999999984
Q ss_pred ----------------------------eEEec-C-----------------------------------Chh-------
Q 039776 766 ----------------------------TVIAE-A-----------------------------------KPE------- 774 (922)
Q Consensus 766 ----------------------------~~~~~-~-----------------------------------~p~------- 774 (922)
..+.. . .++
T Consensus 81 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~ 160 (272)
T PRK15126 81 QDLPADVAELVLHQQWDTRASMHVFNDDGWFTGKEIPALLQAHVYSGFRYQLIDLKRLPAHGVTKICFCGDHDDLTRLQI 160 (272)
T ss_pred ecCCHHHHHHHHHHhhhcCcEEEEEcCCeEEecCCcHHHHHHHHhcCCceEEecHHHccccCceEEEEECCHHHHHHHHH
Confidence 00000 0 000
Q ss_pred ---------------------------hHHHHHHHHHHc----CCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhc
Q 039776 775 ---------------------------QKAEKVEELQAS----GYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAA 823 (922)
Q Consensus 775 ---------------------------~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~a 823 (922)
.|..-++.+.+. .+.|+++||+.||.+||+.|+.||||+++.+.+|+.|
T Consensus 161 ~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~A 240 (272)
T PRK15126 161 QLNEALGERAHLCFSATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAEL 240 (272)
T ss_pred HHHHHhcCCEEEEEcCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHhC
Confidence 011112222111 1369999999999999999999999999999999999
Q ss_pred CE--EEeCCChhhHHHHHH
Q 039776 824 DI--VLMKSNLEDEITAID 840 (922)
Q Consensus 824 d~--vl~~~~~~~l~~~i~ 840 (922)
|. |..+++-.++..+++
T Consensus 241 ~~~~v~~~n~edGva~~l~ 259 (272)
T PRK15126 241 PHLPVIGHCRNQAVSHYLT 259 (272)
T ss_pred CCCeecCCCcchHHHHHHH
Confidence 86 666778888887764
No 50
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.93 E-value=7.5e-09 Score=110.73 Aligned_cols=133 Identities=23% Similarity=0.367 Sum_probs=103.7
Q ss_pred eEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc--------------------
Q 039776 706 TEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE-------------------- 765 (922)
Q Consensus 706 ~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~-------------------- 765 (922)
+.+++..||+++.- ..++.+.++++|+++++.|++++++||++...+..+.++++++
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~ 80 (264)
T COG0561 4 KLLAFDLDGTLLDS---NKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNGGELLFQ 80 (264)
T ss_pred eEEEEcCCCCccCC---CCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecCCcEEee
Confidence 44566677776642 2338999999999999999999999999999999999999984
Q ss_pred -----------------------eEE------------------------------------------------------
Q 039776 766 -----------------------TVI------------------------------------------------------ 768 (922)
Q Consensus 766 -----------------------~~~------------------------------------------------------ 768 (922)
.++
T Consensus 81 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (264)
T COG0561 81 KPLSREDVEELLELLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVE 160 (264)
T ss_pred ecCCHHHHHHHHHHHHhccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHHH
Confidence 000
Q ss_pred --------------------ecCCh--hhHHHHHHHHHHc-C---CeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHh
Q 039776 769 --------------------AEAKP--EQKAEKVEELQAS-G---YTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEA 822 (922)
Q Consensus 769 --------------------~~~~p--~~K~~~v~~l~~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ 822 (922)
.++.| -+|..-++.+.+. | +.|+++||+.||.+||+.|+.||+|+++.+.+++.
T Consensus 161 ~l~~~~~~~~~~~~~s~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~~ 240 (264)
T COG0561 161 ALRKRFPDLGLTVSSSGPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKEL 240 (264)
T ss_pred HHhhhccccceEEEEcCCceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHhh
Confidence 00111 1233344444442 2 35999999999999999999999999999999999
Q ss_pred cCEEEeCCChhhHHHHHHH
Q 039776 823 ADIVLMKSNLEDEITAIDL 841 (922)
Q Consensus 823 ad~vl~~~~~~~l~~~i~~ 841 (922)
||++..+++-.++..+++.
T Consensus 241 A~~vt~~n~~~Gv~~~l~~ 259 (264)
T COG0561 241 ADYVTTSNDEDGVAEALEK 259 (264)
T ss_pred CCcccCCccchHHHHHHHH
Confidence 9988888999999888764
No 51
>PRK10976 putative hydrolase; Provisional
Probab=98.93 E-value=7.2e-09 Score=111.02 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=98.4
Q ss_pred EEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc---------------------
Q 039776 707 EILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE--------------------- 765 (922)
Q Consensus 707 ~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~--------------------- 765 (922)
.+++-.||+++.- ...+.+...++|++++++|++++++||+....+..+.+++|++
T Consensus 4 li~~DlDGTLl~~---~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~i~~ 80 (266)
T PRK10976 4 VVASDLDGTLLSP---DHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVHDTDGNLIFS 80 (266)
T ss_pred EEEEeCCCCCcCC---CCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCeEEEcCCcEEECCCCCEehh
Confidence 4566678888742 3458899999999999999999999999999999999999974
Q ss_pred -----------------------------eEEe-cC------------------------------------ChhhHHHH
Q 039776 766 -----------------------------TVIA-EA------------------------------------KPEQKAEK 779 (922)
Q Consensus 766 -----------------------------~~~~-~~------------------------------------~p~~K~~~ 779 (922)
..+. +. .++....+
T Consensus 81 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~~~ 160 (266)
T PRK10976 81 HNLDRDIASDLFGVVHDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFKYQLYEPGLLEPDGVSKVFFTCDSHEKLLPL 160 (266)
T ss_pred hcCCHHHHHHHHHhhcccCCEEEEEEcCCeEEEcCCChHHHHHHHhcCCcceeechhhcccCCceEEEEEcCCHHHHHHH
Confidence 0000 00 00111111
Q ss_pred HHHHH----------------------------------Hc----CCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHH
Q 039776 780 VEELQ----------------------------------AS----GYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIE 821 (922)
Q Consensus 780 v~~l~----------------------------------~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~ 821 (922)
.+.+. +. .+.|+++||+.||.+||+.|+.||||+++.+.+|+
T Consensus 161 ~~~l~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK~ 240 (266)
T PRK10976 161 EQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLKD 240 (266)
T ss_pred HHHHHHHhCCcEEEEEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHHH
Confidence 11121 10 13699999999999999999999999999999999
Q ss_pred hcC--EEEeCCChhhHHHHHH
Q 039776 822 AAD--IVLMKSNLEDEITAID 840 (922)
Q Consensus 822 ~ad--~vl~~~~~~~l~~~i~ 840 (922)
.|| .|..+++-.++..+++
T Consensus 241 ~A~~~~v~~~n~edGVa~~l~ 261 (266)
T PRK10976 241 LLPELEVIGSNADDAVPHYLR 261 (266)
T ss_pred hCCCCeecccCchHHHHHHHH
Confidence 988 6777788888888775
No 52
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.93 E-value=4.8e-09 Score=108.91 Aligned_cols=113 Identities=25% Similarity=0.360 Sum_probs=96.2
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec-----------------CChhhHHHHHHHHHHcC
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE-----------------AKPEQKAEKVEELQASG 787 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~g 787 (922)
+++|++.+.++.|++.|+++.++||.....+..+.+.+|+..+++. ..++.|..+++.+.++.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 164 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKE 164 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHc
Confidence 5899999999999999999999999999999999999999877642 12334788887766543
Q ss_pred ----CeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHH
Q 039776 788 ----YTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITA 838 (922)
Q Consensus 788 ----~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~ 838 (922)
+.+.||||+.+|.++++.|+++++++ +.+..++.||.++.++++..+..+
T Consensus 165 ~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~-~~~~~~~~a~~~i~~~~~~~~~~~ 218 (219)
T TIGR00338 165 GISPENTVAVGDGANDLSMIKAAGLGIAFN-AKPKLQQKADICINKKDLTDILPL 218 (219)
T ss_pred CCCHHHEEEEECCHHHHHHHHhCCCeEEeC-CCHHHHHhchhccCCCCHHHHHhh
Confidence 46999999999999999999999996 567888999999999998877654
No 53
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.90 E-value=1.3e-08 Score=101.91 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=90.8
Q ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHc----CCeEEEEcCCcccHHHHHhCC
Q 039776 732 GVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQAS----GYTVAMVGDGINDSPALVAAD 807 (922)
Q Consensus 732 ~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~ 807 (922)
.+++.|+++|+++.++||+....+..+++++|+..+|... ++|...++.+.++ .+.++||||+.||.++++.|+
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g~--~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG 132 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQGQ--SNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVG 132 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecCC--CcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCC
Confidence 6899999999999999999999999999999999888753 5577766665443 357999999999999999999
Q ss_pred ceEEecCCcHHHHHhcCEEEeCC----ChhhHHHHHHHHHH
Q 039776 808 VGMAIGAGTDIAIEAADIVLMKS----NLEDEITAIDLSRK 844 (922)
Q Consensus 808 vgia~~~~~~~~~~~ad~vl~~~----~~~~l~~~i~~~r~ 844 (922)
++++++++.+..+..||+++..+ .+..+.+.+...|-
T Consensus 133 ~~~~v~~~~~~~~~~a~~v~~~~~g~g~~~el~~~i~~~~~ 173 (183)
T PRK09484 133 LSVAVADAHPLLLPRADYVTRIAGGRGAVREVCDLLLLAQG 173 (183)
T ss_pred CeEecCChhHHHHHhCCEEecCCCCCCHHHHHHHHHHHhcC
Confidence 99999888888899999999643 24555555544443
No 54
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.86 E-value=1.1e-08 Score=84.16 Aligned_cols=66 Identities=29% Similarity=0.603 Sum_probs=62.5
Q ss_pred EEEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCccc
Q 039776 71 VCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAI 136 (922)
Q Consensus 71 ~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~ 136 (922)
...+.++||+|.+|+.++++.|++++|+.++++++..+...+.+++...+.+++.++++..||.+.
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~ 68 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE 68 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence 468999999999999999999999999999999999999999999988899999999999999864
No 55
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.83 E-value=2.1e-08 Score=104.52 Aligned_cols=127 Identities=24% Similarity=0.253 Sum_probs=97.4
Q ss_pred EECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc-------------------------
Q 039776 711 SVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE------------------------- 765 (922)
Q Consensus 711 ~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~------------------------- 765 (922)
-.||+++. =...+.+.+.++|++|++.|++++++||++...+..+.+.+|+.
T Consensus 4 DlDGTLl~---~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~~ 80 (225)
T TIGR01482 4 DIDGTLTD---PNRAINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNEGMDDIFLAYL 80 (225)
T ss_pred eccCccCC---CCcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCcEEEeCCCCceEEeccc
Confidence 34666653 12348889999999999999999999999999999999999962
Q ss_pred --------------------------------------------------eE-------EecCCh--hhHHHHHHHHHHc
Q 039776 766 --------------------------------------------------TV-------IAEAKP--EQKAEKVEELQAS 786 (922)
Q Consensus 766 --------------------------------------------------~~-------~~~~~p--~~K~~~v~~l~~~ 786 (922)
.+ +.++.| ..|..-++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~ 160 (225)
T TIGR01482 81 EEEWFLDIVIAKTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEK 160 (225)
T ss_pred CHHHHHHHHHhcccchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHH
Confidence 00 001112 2355555555442
Q ss_pred ----CCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhh----HHHHHH
Q 039776 787 ----GYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLED----EITAID 840 (922)
Q Consensus 787 ----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~----l~~~i~ 840 (922)
.+.++++||+.||.+|++.|++|++|+++.+..|+.||.|..+++-.+ +..+++
T Consensus 161 ~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~A~~vt~~~~~~G~~~~v~~~l~ 222 (225)
T TIGR01482 161 LGIKPGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEWADYVTESPYGEGGAEAIGEILQ 222 (225)
T ss_pred hCCCHHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHhcCeecCCCCCCcHHHHHHHHHH
Confidence 246999999999999999999999999999999999999998877777 555543
No 56
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.82 E-value=5.5e-08 Score=104.66 Aligned_cols=52 Identities=31% Similarity=0.392 Sum_probs=48.7
Q ss_pred eEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHH
Q 039776 789 TVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAID 840 (922)
Q Consensus 789 ~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 840 (922)
.++++||+.||.+|++.|++|++||++.+..++.||.|..+++-.++.++++
T Consensus 217 e~i~~GD~~NDi~m~~~ag~~vamgna~~~lk~~Ad~v~~~n~~dGv~~~l~ 268 (272)
T PRK10530 217 NVVAFGDNFNDISMLEAAGLGVAMGNADDAVKARADLVIGDNTTPSIAEFIY 268 (272)
T ss_pred HeEEeCCChhhHHHHHhcCceEEecCchHHHHHhCCEEEecCCCCcHHHHHH
Confidence 6999999999999999999999999999999999999999888889988775
No 57
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.79 E-value=2.2e-08 Score=106.26 Aligned_cols=117 Identities=24% Similarity=0.325 Sum_probs=95.7
Q ss_pred CCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc-------------------------------------
Q 039776 723 SDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE------------------------------------- 765 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~------------------------------------- 765 (922)
...+.++..+++++|+++|++++++||+....+..+..++++.
T Consensus 13 ~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~ 92 (254)
T PF08282_consen 13 DGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLK 92 (254)
T ss_dssp TSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHH
T ss_pred CCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccceeeecccccchhhheeccchhheeehhh
Confidence 4567899999999999999999999999999999999999973
Q ss_pred --------------------------------------------------------------------------------
Q 039776 766 -------------------------------------------------------------------------------- 765 (922)
Q Consensus 766 -------------------------------------------------------------------------------- 765 (922)
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (254)
T PF08282_consen 93 EHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPEDLEQLREELKKKFPNLIDVVR 172 (254)
T ss_dssp HTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred hcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchhhhhhhhhhccccCcceeEEE
Confidence
Q ss_pred --eEEecCCh--hhHHHHHHHHHHc----CCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHH
Q 039776 766 --TVIAEAKP--EQKAEKVEELQAS----GYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEIT 837 (922)
Q Consensus 766 --~~~~~~~p--~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~ 837 (922)
..+..++| -.|..-++.+.+. .+.++++||+.||.+|++.++.|++|+++++..++.||.+....+-.++.+
T Consensus 173 ~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k~~a~~i~~~~~~~gv~~ 252 (254)
T PF08282_consen 173 SSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPELKKAADYITPSNNDDGVAK 252 (254)
T ss_dssp EETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEESSGTCTHHHH
T ss_pred ecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHHHHHhCCEEecCCCCChHHH
Confidence 00112223 3466666666542 357999999999999999999999999999999999999998877677776
Q ss_pred HH
Q 039776 838 AI 839 (922)
Q Consensus 838 ~i 839 (922)
+|
T Consensus 253 ~i 254 (254)
T PF08282_consen 253 AI 254 (254)
T ss_dssp HH
T ss_pred hC
Confidence 54
No 58
>PLN02887 hydrolase family protein
Probab=98.77 E-value=4.5e-08 Score=113.59 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=49.1
Q ss_pred eEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHHHH
Q 039776 789 TVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITAID 840 (922)
Q Consensus 789 ~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 840 (922)
.|+++|||.||.+||+.|+.||||+++.+.+|+.||+|..+++-.++..+++
T Consensus 525 eviAFGDs~NDIeMLe~AG~gVAMgNA~eeVK~~Ad~VT~sNdEDGVA~aLe 576 (580)
T PLN02887 525 EIMAIGDGENDIEMLQLASLGVALSNGAEKTKAVADVIGVSNDEDGVADAIY 576 (580)
T ss_pred HEEEEecchhhHHHHHHCCCEEEeCCCCHHHHHhCCEEeCCCCcCHHHHHHH
Confidence 6999999999999999999999999999999999999998888889988775
No 59
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.77 E-value=2.3e-08 Score=82.30 Aligned_cols=65 Identities=23% Similarity=0.466 Sum_probs=61.5
Q ss_pred ceeeeecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhCCCCccc
Q 039776 147 KIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTASGHFKA 214 (922)
Q Consensus 147 ~~~~~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~a 214 (922)
...+.++||+|.+|+..++++|..++||.++.+++..+++.+.|++...+.+++.++++..| |.+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aG---y~~ 67 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAG---YKV 67 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcC---CCe
Confidence 47899999999999999999999999999999999999999999998899999999999999 654
No 60
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.75 E-value=4.7e-08 Score=99.57 Aligned_cols=103 Identities=30% Similarity=0.413 Sum_probs=84.1
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEe-----------------cCChhhHHHHHHHHHHc
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIA-----------------EAKPEQKAEKVEELQAS 786 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~-----------------~~~p~~K~~~v~~l~~~ 786 (922)
.+++|++.+.++.++++|.+++++||-...-+..+++++|++..++ .+..+.|...++.+.++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999974322 12347898888776664
Q ss_pred -CC---eEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEE
Q 039776 787 -GY---TVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVL 827 (922)
Q Consensus 787 -g~---~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl 827 (922)
|. .+.++|||.||.|||+.|+.++++... ...+..|+...
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~-~~l~~~a~~~~ 199 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAVNPK-PKLRALADVRI 199 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcC-HHHHHHHHHhc
Confidence 54 599999999999999999999999754 33444555443
No 61
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.74 E-value=5.5e-08 Score=99.80 Aligned_cols=113 Identities=23% Similarity=0.424 Sum_probs=91.4
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec---------------CChhhHHHHHHHHHHcCCe
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE---------------AKPEQKAEKVEELQASGYT 789 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~---------------~~p~~K~~~v~~l~~~g~~ 789 (922)
++.|++.+.++.|+++ +++.++|+.....+..+.+++|+..+++. ..|+.|...++.++..+..
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~~ 146 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGYR 146 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCCe
Confidence 4689999999999999 99999999999999999999998754431 2467888899999888899
Q ss_pred EEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCE-EEeCCChhhHHHHHH
Q 039776 790 VAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADI-VLMKSNLEDEITAID 840 (922)
Q Consensus 790 v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~-vl~~~~~~~l~~~i~ 840 (922)
++||||+.||.++.+.|++|+.++...+.....++. ++ +++..+...+.
T Consensus 147 ~v~iGDs~~D~~~~~aa~~~v~~~~~~~~~~~~~~~~~~--~~~~el~~~l~ 196 (205)
T PRK13582 147 VIAAGDSYNDTTMLGEADAGILFRPPANVIAEFPQFPAV--HTYDELLAAID 196 (205)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEECCCHHHHHhCCccccc--CCHHHHHHHHH
Confidence 999999999999999999999987654444445555 33 56666665443
No 62
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.66 E-value=1.2e-07 Score=101.06 Aligned_cols=50 Identities=34% Similarity=0.387 Sum_probs=46.0
Q ss_pred eEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhhHHHH
Q 039776 789 TVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDEITA 838 (922)
Q Consensus 789 ~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~ 838 (922)
.++++||+.||.+|++.|+.|++|+++.+..++.||+++.+++-.++..+
T Consensus 206 ~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~~a~~~~~~n~~dGV~~~ 255 (256)
T TIGR00099 206 DVIAFGDGMNDIEMLEAAGYGVAMGNADEELKALADYVTDSNNEDGVALA 255 (256)
T ss_pred HEEEeCCcHHhHHHHHhCCceeEecCchHHHHHhCCEEecCCCCcchhhh
Confidence 69999999999999999999999999999999999999988887777654
No 63
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.59 E-value=2.4e-07 Score=94.66 Aligned_cols=100 Identities=26% Similarity=0.355 Sum_probs=81.8
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec-----------------CChhhHHHHHHHHHHc-
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE-----------------AKPEQKAEKVEELQAS- 786 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~- 786 (922)
+++|++.+.++.|+++|+++.++|+.....+..+++.+|+..+++. ..|..|.+.++.+.++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~~ 159 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKREL 159 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999876542 1234576677766543
Q ss_pred ---CCeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcC
Q 039776 787 ---GYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAAD 824 (922)
Q Consensus 787 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad 824 (922)
.+.++|+||+.||.+|++.||++++++.+....+.++|
T Consensus 160 ~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~~~~~a~~ 200 (201)
T TIGR01491 160 NPSLTETVAVGDSKNDLPMFEVADISISLGDEGHADYLAKD 200 (201)
T ss_pred CCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCccchhhccc
Confidence 34699999999999999999999999865555555554
No 64
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.56 E-value=9.8e-08 Score=90.61 Aligned_cols=89 Identities=29% Similarity=0.431 Sum_probs=76.3
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce--EEecC-------------------ChhhHHHHHHHH
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET--VIAEA-------------------KPEQKAEKVEEL 783 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~--~~~~~-------------------~p~~K~~~v~~l 783 (922)
.+.|++++.+..|++.|.++.++||.-...+..+|.++||+. +|++. ....|.++++.+
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~l 167 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALL 167 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHH
Confidence 478999999999999999999999999999999999999984 55432 234699999999
Q ss_pred HHc--CCeEEEEcCCcccHHHHHhCCceEEec
Q 039776 784 QAS--GYTVAMVGDGINDSPALVAADVGMAIG 813 (922)
Q Consensus 784 ~~~--g~~v~~vGDg~nD~~al~~A~vgia~~ 813 (922)
++. -+.++|||||.||.+|+..||.=|+.+
T Consensus 168 rk~~~~~~~~mvGDGatDlea~~pa~afi~~~ 199 (227)
T KOG1615|consen 168 RKNYNYKTIVMVGDGATDLEAMPPADAFIGFG 199 (227)
T ss_pred HhCCChheeEEecCCccccccCCchhhhhccC
Confidence 884 357999999999999999987766665
No 65
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.51 E-value=5e-07 Score=93.53 Aligned_cols=116 Identities=26% Similarity=0.355 Sum_probs=91.7
Q ss_pred CCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEe-----c------CChhhHHHHHHHHHHcCCeEE
Q 039776 723 SDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIA-----E------AKPEQKAEKVEELQASGYTVA 791 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~-----~------~~p~~K~~~v~~l~~~g~~v~ 791 (922)
...+-|+++++++.|+++|++..++|+++...+..+.+++|+..+|. . ..|+.....++.+....+.++
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 45688999999999999999999999999999999999999986552 1 133334445555544444799
Q ss_pred EEcCCcccHHHHHhCC---ceEEecC--CcHHHHHhcCEEEeCCChhhHHHHHH
Q 039776 792 MVGDGINDSPALVAAD---VGMAIGA--GTDIAIEAADIVLMKSNLEDEITAID 840 (922)
Q Consensus 792 ~vGDg~nD~~al~~A~---vgia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i~ 840 (922)
||||..+|..|-++|+ +|+.+|. ........+|+++ +++..|...+.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi--~~~~el~~~l~ 218 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVI--DSLAELLALLA 218 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEE--CCHHHHHHHHh
Confidence 9999999999999998 7788885 3556666799998 66877776553
No 66
>PLN02954 phosphoserine phosphatase
Probab=98.51 E-value=9.3e-07 Score=92.07 Aligned_cols=112 Identities=26% Similarity=0.382 Sum_probs=86.3
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc--eEEec-------------------CChhhHHHHHHHH
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE--TVIAE-------------------AKPEQKAEKVEEL 783 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~--~~~~~-------------------~~p~~K~~~v~~l 783 (922)
+++|++.++++.|++.|+++.++||.....+..+++.+|++ .+++. .....|.+.++.+
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~ 163 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHI 163 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHH
Confidence 47899999999999999999999999999999999999996 35531 0124588888887
Q ss_pred HHc--CCeEEEEcCCcccHHHHHh--CCceEEecCC--cHHHHHhcCEEEeCCChhhHHHH
Q 039776 784 QAS--GYTVAMVGDGINDSPALVA--ADVGMAIGAG--TDIAIEAADIVLMKSNLEDEITA 838 (922)
Q Consensus 784 ~~~--g~~v~~vGDg~nD~~al~~--A~vgia~~~~--~~~~~~~ad~vl~~~~~~~l~~~ 838 (922)
.++ .+.++||||+.||..|.+. ++++++++.. .+.....+|.++ +++..+...
T Consensus 164 ~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~el~~~ 222 (224)
T PLN02954 164 KKKHGYKTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFV--TDFQDLIEV 222 (224)
T ss_pred HHHcCCCceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEE--CCHHHHHHh
Confidence 764 3579999999999999887 4566666642 233455689988 457666554
No 67
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.43 E-value=1.7e-06 Score=92.74 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=48.6
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc
Q 039776 705 QTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE 765 (922)
Q Consensus 705 ~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~ 765 (922)
.+.++.-.||+++.- ...+.+.++++|++|+++|++++++||+....+..+++++|++
T Consensus 7 ~~lI~~DlDGTLL~~---~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 7 PLLIFTDLDGTLLDS---HTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CeEEEEeCccCCcCC---CCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 455667788998741 3346688999999999999999999999999999999999873
No 68
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.38 E-value=2.9e-06 Score=91.08 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=48.8
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc
Q 039776 705 QTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE 765 (922)
Q Consensus 705 ~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~ 765 (922)
.+.+++-.||+++.- .+.+.+++.++|++|+++|++++++||+....+..+.+++|+.
T Consensus 4 ~kli~~DlDGTLl~~---~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDH---HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCC---CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 345666778888742 3457788999999999999999999999999999999999974
No 69
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.34 E-value=2.4e-06 Score=87.58 Aligned_cols=113 Identities=19% Similarity=0.340 Sum_probs=83.9
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC-------ChhhHHH----HHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA-------KPEQKAE----KVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~----~v~~l~~~g~~v~~v 793 (922)
++.|++.+++++|+++|+++.++||.....+....+.+|+..++..+ .++.+.. +++.++-..+.++||
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~i 154 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMV 154 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEEE
Confidence 78899999999999999999999999999999999999996433211 1222333 333344345679999
Q ss_pred cCCcccHHHHHhCCc---eEEecCCc--HHHHHhcCEEEeCCChhhHHHHH
Q 039776 794 GDGINDSPALVAADV---GMAIGAGT--DIAIEAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 794 GDg~nD~~al~~A~v---gia~~~~~--~~~~~~ad~vl~~~~~~~l~~~i 839 (922)
||+.+|..+.+++++ ++.+|.++ +.....+|+++ +++..+..++
T Consensus 155 gD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~--~~~~~l~~~~ 203 (205)
T TIGR01454 155 GDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLL--RKPQSLLALC 203 (205)
T ss_pred cCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeee--CCHHHHHHHh
Confidence 999999999999995 45566433 34566789887 5677766544
No 70
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.34 E-value=3.3e-06 Score=87.12 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=75.0
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC-ceEEec-C----------Ch------------hhHHHH
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGI-ETVIAE-A----------KP------------EQKAEK 779 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi-~~~~~~-~----------~p------------~~K~~~ 779 (922)
.+++|++.+.++.|++.|+++.++||.....+..+.+.++. ..+++. + .| ..|..+
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 46899999999999999999999999999999998888753 333331 0 12 248899
Q ss_pred HHHHHHcCCeEEEEcCCcccHHHHHhCCceEEec
Q 039776 780 VEELQASGYTVAMVGDGINDSPALVAADVGMAIG 813 (922)
Q Consensus 780 v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~ 813 (922)
++.++...+.+.|||||.||..|++.||+.++-+
T Consensus 149 l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar~ 182 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFARD 182 (214)
T ss_pred HHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEehH
Confidence 9998888888999999999999999999977754
No 71
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.32 E-value=0.00031 Score=83.57 Aligned_cols=65 Identities=34% Similarity=0.659 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCC-HHHHHHHHHhcCCccc
Q 039776 71 VCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILS-CNQLLKAIEDTGFEAI 136 (922)
Q Consensus 71 ~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~-~~~i~~~i~~~G~~~~ 136 (922)
+..+.++||+|++|+.++| ++++++||.++.+|+.++++.+.|++...+ .+.+.+.+++.||.+.
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~ 68 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSAR 68 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCcccc
Confidence 4679999999999999999 999999999999999999999999987666 7899999999999764
No 72
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.29 E-value=4.6e-06 Score=88.70 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=45.3
Q ss_pred CeEEEEcCCcccHHHHHhCCceEEecCCc---HHHHHh--c-CEEEeCCChhhHHHHHH
Q 039776 788 YTVAMVGDGINDSPALVAADVGMAIGAGT---DIAIEA--A-DIVLMKSNLEDEITAID 840 (922)
Q Consensus 788 ~~v~~vGDg~nD~~al~~A~vgia~~~~~---~~~~~~--a-d~vl~~~~~~~l~~~i~ 840 (922)
+.++++||+.||.+|++.|+.||+|+++. +..|+. | +.|..+++-+++.++++
T Consensus 195 ~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~~l~ 253 (256)
T TIGR01486 195 IKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGWREALE 253 (256)
T ss_pred ceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCCCCcHHHHHHHH
Confidence 35999999999999999999999999987 467776 4 58887888888888775
No 73
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.26 E-value=3.8e-06 Score=87.04 Aligned_cols=87 Identities=21% Similarity=0.230 Sum_probs=73.2
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc--eEEec---C----------Ch----------hhHHHH
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE--TVIAE---A----------KP----------EQKAEK 779 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~--~~~~~---~----------~p----------~~K~~~ 779 (922)
+++|++.+.++.|++.|+++.++||.....+..+.+++ +. .+++. . .| ..|..+
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 68999999999999999999999999999999999887 63 24432 1 11 248889
Q ss_pred HHHHHHcCCeEEEEcCCcccHHHHHhCCceEEe
Q 039776 780 VEELQASGYTVAMVGDGINDSPALVAADVGMAI 812 (922)
Q Consensus 780 v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~ 812 (922)
++.++.....+.|||||.||.+|.+.||+.++-
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~ 185 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFAR 185 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCcceeH
Confidence 998888778899999999999999999997773
No 74
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.26 E-value=4.7e-06 Score=86.87 Aligned_cols=117 Identities=25% Similarity=0.349 Sum_probs=87.5
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC---------Ch--hhHHHHHHHHHHcCCeEEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA---------KP--EQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~---------~p--~~K~~~v~~l~~~g~~v~~ 792 (922)
.++.|++.+.++.|++.|+++.++||........+.+.+|+...+... .| +--..+++.++...+.+++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 171 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLF 171 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEE
Confidence 468899999999999999999999999999999999999986443321 12 1123344555445678999
Q ss_pred EcCCcccHHHHHhCCc---eEEecC--CcHHHHHhcCEEEeCCChhhHHHHHHHH
Q 039776 793 VGDGINDSPALVAADV---GMAIGA--GTDIAIEAADIVLMKSNLEDEITAIDLS 842 (922)
Q Consensus 793 vGDg~nD~~al~~A~v---gia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 842 (922)
|||+.+|+.+.+.+++ ++.+|. ..+.....++.++ +++.++...+.++
T Consensus 172 igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i--~~~~~l~~~l~~~ 224 (226)
T PRK13222 172 VGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVI--DHFAELLPLLGLA 224 (226)
T ss_pred ECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEE--CCHHHHHHHHHHh
Confidence 9999999999999997 444442 2344455688877 7788888877543
No 75
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.23 E-value=2.6e-06 Score=85.04 Aligned_cols=82 Identities=34% Similarity=0.474 Sum_probs=69.3
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEe-------------------cCChhhHHHHHHHHHH
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIA-------------------EAKPEQKAEKVEELQA 785 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~-------------------~~~p~~K~~~v~~l~~ 785 (922)
+++|++.+.++.+++.|++++++||.....+..+++.+|+..+++ ...+..|...++.+++
T Consensus 73 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~ 152 (177)
T TIGR01488 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLE 152 (177)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHH
Confidence 367999999999999999999999999999999999999975543 1234679989988766
Q ss_pred c----CCeEEEEcCCcccHHHHHhC
Q 039776 786 S----GYTVAMVGDGINDSPALVAA 806 (922)
Q Consensus 786 ~----g~~v~~vGDg~nD~~al~~A 806 (922)
+ ...+.++|||.||.+|++.|
T Consensus 153 ~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 153 ESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 4 35699999999999999865
No 76
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.23 E-value=5.5e-06 Score=85.53 Aligned_cols=113 Identities=20% Similarity=0.183 Sum_probs=83.9
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC-----------ChhhHHHHHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA-----------KPEQKAEKVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~-----------~p~~K~~~v~~l~~~g~~v~~v 793 (922)
++.|++.++++.|+++|+++.++|+.....+..+.+.+|+..+|..+ .|+--..+++.+......++||
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 47899999999999999999999999999999999999998654221 1222233444444345679999
Q ss_pred cCCcccHHHHHhCCc---eEEecCCc-H-HHHHhcCEEEeCCChhhHHHHH
Q 039776 794 GDGINDSPALVAADV---GMAIGAGT-D-IAIEAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 794 GDg~nD~~al~~A~v---gia~~~~~-~-~~~~~ad~vl~~~~~~~l~~~i 839 (922)
||+.+|..+.++|++ ++.+|... + .....+|.++ +++.++..++
T Consensus 162 GDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i--~~~~~l~~~i 210 (214)
T PRK13288 162 GDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFML--DKMSDLLAIV 210 (214)
T ss_pred CCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEE--CCHHHHHHHH
Confidence 999999999999996 55566332 2 3345688876 5788777654
No 77
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.22 E-value=5.2e-06 Score=84.91 Aligned_cols=92 Identities=26% Similarity=0.269 Sum_probs=77.1
Q ss_pred CCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec------------------CChhhHHHHHHHHH
Q 039776 723 SDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE------------------AKPEQKAEKVEELQ 784 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~------------------~~p~~K~~~v~~l~ 784 (922)
...++|++.+.++.++++|++++++|+.....+..+++.+|++.+++. +.+++|...++.+.
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999866542 12356887777765
Q ss_pred Hc-C---CeEEEEcCCcccHHHHHhCCceEEecC
Q 039776 785 AS-G---YTVAMVGDGINDSPALVAADVGMAIGA 814 (922)
Q Consensus 785 ~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~ 814 (922)
++ + +.+.++||+.+|.++++.|+.++++..
T Consensus 165 ~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~ 198 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNP 198 (202)
T ss_pred HHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCC
Confidence 43 3 368999999999999999999998864
No 78
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.22 E-value=3.4e-06 Score=85.10 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=74.0
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce----EEec-----------------------CChhhH
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET----VIAE-----------------------AKPEQK 776 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~----~~~~-----------------------~~p~~K 776 (922)
-+++|++.+.++.|++.|+++.++|+........+.+..|+.. +++. .....|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 4789999999999999999999999999999999999999864 3321 011249
Q ss_pred HHHHHHHHHc-CCeEEEEcCCcccHHHHHhCCceEE
Q 039776 777 AEKVEELQAS-GYTVAMVGDGINDSPALVAADVGMA 811 (922)
Q Consensus 777 ~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia 811 (922)
.++++.++++ .+.+.|+|||.||..|.+.||+-.|
T Consensus 151 ~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~a 186 (188)
T TIGR01489 151 GKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVFA 186 (188)
T ss_pred HHHHHHHHhhcCceEEEECCCcchhchHhcCCcccc
Confidence 9999999887 8899999999999999999887543
No 79
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.20 E-value=7.2e-06 Score=86.05 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=51.9
Q ss_pred HHHHHHHHHHc-C---CeEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcC----EEEeCCChhhHHHHHH
Q 039776 776 KAEKVEELQAS-G---YTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAAD----IVLMKSNLEDEITAID 840 (922)
Q Consensus 776 K~~~v~~l~~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad----~vl~~~~~~~l~~~i~ 840 (922)
|...++.+.++ | ..++++||+.||.+|++.++.||+|+++.+..++.|| +|...++-.++.+++.
T Consensus 160 K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~a~~~~~~v~~~~~~~Gv~~~i~ 232 (236)
T TIGR02471 160 KGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGLRHQQRIYFANNPHAFGILEGIN 232 (236)
T ss_pred hHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHhhcCCcEEEcCCCChhHHHHHHH
Confidence 44444444432 2 2699999999999999999999999999999999999 7776667778887775
No 80
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.16 E-value=5.2e-06 Score=84.06 Aligned_cols=77 Identities=36% Similarity=0.488 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce--EEe-cC------------Chh-h--HHHHHHHH------
Q 039776 728 PGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET--VIA-EA------------KPE-Q--KAEKVEEL------ 783 (922)
Q Consensus 728 ~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~--~~~-~~------------~p~-~--K~~~v~~l------ 783 (922)
+++.+.|+.++++|++++|+||+....+..+++.+|++. +++ +. ++. + |...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 777799999999999999999999999999999999985 333 22 222 3 99999999
Q ss_pred HHcCCeEEEEcCCcccHHHHH
Q 039776 784 QASGYTVAMVGDGINDSPALV 804 (922)
Q Consensus 784 ~~~g~~v~~vGDg~nD~~al~ 804 (922)
+.....+.++|||.||.+||+
T Consensus 172 ~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 172 DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp THTCCEEEEEESSGGGHHHHH
T ss_pred CCCCCeEEEEECCHHHHHHhC
Confidence 345788999999999999986
No 81
>PRK06769 hypothetical protein; Validated
Probab=98.09 E-value=1.2e-05 Score=79.57 Aligned_cols=133 Identities=20% Similarity=0.212 Sum_probs=87.3
Q ss_pred CceEEEEEECCEEEEEEEcCC----CcchhHHHHHHHHHHCCCEEEEEcCCCHH--------HHHHHHHHhCCceEEecC
Q 039776 704 AQTEILVSVDGELTGVLSISD----PLKPGAHGVISILKSMQIRSILVTGDNWG--------TAKSIASEVGIETVIAEA 771 (922)
Q Consensus 704 ~~~~l~v~~~~~~~G~~~~~d----~~r~~~~~~i~~l~~~gi~~~~~tgd~~~--------~a~~ia~~~gi~~~~~~~ 771 (922)
+.+.+.+..|+++.|-..+.+ ++.|++++++++|++.|+++.++|+.... ......+..|++.++...
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 82 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCP 82 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECc
Confidence 567888889998877644333 36899999999999999999999987641 233445678888766321
Q ss_pred --C----hhhH------HHHHHHHHHcCCeEEEEcCCcccHHHHHhCCce---EEecCCcHH--------HHHhcCEEEe
Q 039776 772 --K----PEQK------AEKVEELQASGYTVAMVGDGINDSPALVAADVG---MAIGAGTDI--------AIEAADIVLM 828 (922)
Q Consensus 772 --~----p~~K------~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg---ia~~~~~~~--------~~~~ad~vl~ 828 (922)
. +..| ..+++.+....+.+.||||..+|+.+.+.|++- +..|.+.+. ....+|.++
T Consensus 83 ~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~- 161 (173)
T PRK06769 83 HKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIA- 161 (173)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchh-
Confidence 1 1122 333444433446799999999999999999943 444433321 122355555
Q ss_pred CCChhhHHHH
Q 039776 829 KSNLEDEITA 838 (922)
Q Consensus 829 ~~~~~~l~~~ 838 (922)
+++.++...
T Consensus 162 -~~~~el~~~ 170 (173)
T PRK06769 162 -ENFEDAVNW 170 (173)
T ss_pred -hCHHHHHHH
Confidence 446655543
No 82
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.06 E-value=1.4e-05 Score=82.46 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=79.3
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEE----ec-CC--hhhHHHHH----HHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVI----AE-AK--PEQKAEKV----EELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~----~~-~~--p~~K~~~v----~~l~~~g~~v~~v 793 (922)
++.|++.++++.|+++|+++.++|+.....+..+.+..|+..++ +. -. ++.+.+.+ +.+....+.++||
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYV 164 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEe
Confidence 68899999999999999999999999999999999999986433 21 11 11223333 3333334679999
Q ss_pred cCCcccHHHHHhCCce---EEecCC--cHHHHHhcCEEEeCCChhhHHH
Q 039776 794 GDGINDSPALVAADVG---MAIGAG--TDIAIEAADIVLMKSNLEDEIT 837 (922)
Q Consensus 794 GDg~nD~~al~~A~vg---ia~~~~--~~~~~~~ad~vl~~~~~~~l~~ 837 (922)
||+.+|..+.++|++. +..|.+ .+.....+|.++ +++..+..
T Consensus 165 gDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i--~~~~~l~~ 211 (213)
T TIGR01449 165 GDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLY--DSLNELPP 211 (213)
T ss_pred CCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEe--CCHHHHHh
Confidence 9999999999999955 433432 223335688877 55666654
No 83
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.04 E-value=3.3e-05 Score=82.37 Aligned_cols=113 Identities=18% Similarity=0.280 Sum_probs=83.4
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC---Ch-hhHHHHHHHH----HHcCCeEEEEcCC
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA---KP-EQKAEKVEEL----QASGYTVAMVGDG 796 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~---~p-~~K~~~v~~l----~~~g~~v~~vGDg 796 (922)
++.|++.++++.|+++|+++.++|+.....+..+.+.+|+...|..+ .+ ..|...+..+ .-..+.++||||+
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGDs 221 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVGDE 221 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEECCC
Confidence 57899999999999999999999999999999999999997554321 11 1244443333 2234679999999
Q ss_pred cccHHHHHhCCc---eEEecCCcH--HHHHhcCEEEeCCChhhHHHHH
Q 039776 797 INDSPALVAADV---GMAIGAGTD--IAIEAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 797 ~nD~~al~~A~v---gia~~~~~~--~~~~~ad~vl~~~~~~~l~~~i 839 (922)
.+|+.+.++|++ ++..|.... .....+|+++ +++.+|..++
T Consensus 222 ~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i--~~~~eL~~~~ 267 (273)
T PRK13225 222 TRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLL--ETPSDLLQAV 267 (273)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEE--CCHHHHHHHH
Confidence 999999999994 444553332 3344689887 6788887754
No 84
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.04 E-value=2.3e-05 Score=83.86 Aligned_cols=115 Identities=21% Similarity=0.277 Sum_probs=83.3
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEE----e-cCChhhH--HHHHHH----HHHcCCeEEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVI----A-EAKPEQK--AEKVEE----LQASGYTVAM 792 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~----~-~~~p~~K--~~~v~~----l~~~g~~v~~ 792 (922)
.++.|++.++++.|+++|+++.++||.+...+..+.++.|+..+| + ...+..| .+.++. +.-..+.++|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~ 179 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLF 179 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEE
Confidence 468899999999999999999999999999999999999986533 2 2223233 233333 3323567999
Q ss_pred EcCCcccHHHHHhCCc---eEEecC--CcHHHHHhcCEEEeCCChhhHHHHHH
Q 039776 793 VGDGINDSPALVAADV---GMAIGA--GTDIAIEAADIVLMKSNLEDEITAID 840 (922)
Q Consensus 793 vGDg~nD~~al~~A~v---gia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i~ 840 (922)
|||+.||+.+.+.|++ ++..|. ..+.....+|.++ +++..+..++.
T Consensus 180 IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi--~~l~el~~~~~ 230 (272)
T PRK13223 180 VGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVI--DDLRALLPGCA 230 (272)
T ss_pred ECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEE--CCHHHHHHHHh
Confidence 9999999999999996 344442 2233445788888 56777765533
No 85
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.98 E-value=6.1e-05 Score=79.71 Aligned_cols=131 Identities=13% Similarity=0.098 Sum_probs=93.3
Q ss_pred EEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc------------------------
Q 039776 710 VSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE------------------------ 765 (922)
Q Consensus 710 v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~------------------------ 765 (922)
.-.||+++.--.=..+..|+..++++++++.|+.++++||+.....+.+.+++++.
T Consensus 6 tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~~~~~~~~ 85 (249)
T TIGR01485 6 SDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGGAEVPDQH 85 (249)
T ss_pred EcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCCCCcCCHH
Confidence 34567777311114567899999999999999999999999999999999888862
Q ss_pred -------------------------------------eE----------------------------Ee-----cCCh--
Q 039776 766 -------------------------------------TV----------------------------IA-----EAKP-- 773 (922)
Q Consensus 766 -------------------------------------~~----------------------------~~-----~~~p-- 773 (922)
.+ .+ .+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~~~ 165 (249)
T TIGR01485 86 WAEYLSEKWQRDIVVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILPQG 165 (249)
T ss_pred HHHHHhcccCHHHHHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEeCC
Confidence 00 00 1111
Q ss_pred hhHHHHHHHHHHc----CCeEEEEcCCcccHHHHHh-CCceEEecCCcHHHHHhcC-------EEEeCCChhhHHHHHH
Q 039776 774 EQKAEKVEELQAS----GYTVAMVGDGINDSPALVA-ADVGMAIGAGTDIAIEAAD-------IVLMKSNLEDEITAID 840 (922)
Q Consensus 774 ~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~-A~vgia~~~~~~~~~~~ad-------~vl~~~~~~~l~~~i~ 840 (922)
..|..-++.+.+. ...|+++||+.||.+|++. ++.|++|+++.+..++.++ ++.......++.++++
T Consensus 166 ~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~~~~~~~~~~~~~~~~~~~Gi~e~l~ 244 (249)
T TIGR01485 166 SGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQWYDENAKDKIYHASERCAGGIIEAIA 244 (249)
T ss_pred CChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHHHHhcccCcEEEecCCCcHHHHHHHH
Confidence 2344455555442 2579999999999999998 6799999999888886543 4444445666766654
No 86
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.98 E-value=3e-05 Score=80.89 Aligned_cols=113 Identities=20% Similarity=0.148 Sum_probs=82.6
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEE----e-cC------ChhhHHHHHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVI----A-EA------KPEQKAEKVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~----~-~~------~p~~K~~~v~~l~~~g~~v~~v 793 (922)
++.|++.++++.|++.|+++.++|+.+...+..+.+.+|+...+ + .. .|+-=..+++.+.-..+.++||
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~I 174 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYV 174 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEe
Confidence 57899999999999999999999999999888888999986432 2 11 1222234455554456789999
Q ss_pred cCCcccHHHHHhCCc---eEEecCC--c-HHHHHhcCEEEeCCChhhHHHHH
Q 039776 794 GDGINDSPALVAADV---GMAIGAG--T-DIAIEAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 794 GDg~nD~~al~~A~v---gia~~~~--~-~~~~~~ad~vl~~~~~~~l~~~i 839 (922)
||+.+|..+.+.|++ ++.+|.. . ......+|+++ +++..|.+..
T Consensus 175 GDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i--~~~~el~~~~ 224 (229)
T PRK13226 175 GDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLV--EQPQLLWNPA 224 (229)
T ss_pred CCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeee--CCHHHHHHHh
Confidence 999999999999994 4555532 1 22345688888 5677776544
No 87
>PRK08238 hypothetical protein; Validated
Probab=97.97 E-value=6.4e-05 Score=86.07 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=75.8
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC-ceEEe-----cCChhhHHHHHHHHHHcCCeEEEEcCCcc
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGI-ETVIA-----EAKPEQKAEKVEELQASGYTVAMVGDGIN 798 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi-~~~~~-----~~~p~~K~~~v~~l~~~g~~v~~vGDg~n 798 (922)
+++|++.+.+++++++|+++.++|+.+...+..+++++|+ +.+.+ +..|+.|.+.+.+...+ +.+.++||..+
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd~Vigsd~~~~~kg~~K~~~l~~~l~~-~~~~yvGDS~~ 150 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDGVFASDGTTNLKGAAKAAALVEAFGE-RGFDYAGNSAA 150 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCEEEeCCCccccCCchHHHHHHHHhCc-cCeeEecCCHH
Confidence 5789999999999999999999999999999999999997 66654 34567777655533222 23688999999
Q ss_pred cHHHHHhCCceEEecCCcH
Q 039776 799 DSPALVAADVGMAIGAGTD 817 (922)
Q Consensus 799 D~~al~~A~vgia~~~~~~ 817 (922)
|.++++.|+-.++++.+..
T Consensus 151 Dlp~~~~A~~av~Vn~~~~ 169 (479)
T PRK08238 151 DLPVWAAARRAIVVGASPG 169 (479)
T ss_pred HHHHHHhCCCeEEECCCHH
Confidence 9999999999999986544
No 88
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.88 E-value=5.6e-05 Score=80.26 Aligned_cols=90 Identities=22% Similarity=0.235 Sum_probs=66.8
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEE-----ec-C----Ch--hhHHHHHHHHHHc-CCeEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVI-----AE-A----KP--EQKAEKVEELQAS-GYTVA 791 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~-----~~-~----~p--~~K~~~v~~l~~~-g~~v~ 791 (922)
++.|++.+++++|+++|+++.++||.....+..+.+++|+..++ +. - .| +-=...++.+.-. .+.++
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l 178 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACV 178 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchheE
Confidence 57899999999999999999999999999999998888876543 11 1 12 1112233333322 35699
Q ss_pred EEcCCcccHHHHHhCC---ceEEecC
Q 039776 792 MVGDGINDSPALVAAD---VGMAIGA 814 (922)
Q Consensus 792 ~vGDg~nD~~al~~A~---vgia~~~ 814 (922)
||||..+|+.+.+.|+ ||+..|.
T Consensus 179 ~IGDs~~Di~aA~~aGi~~i~v~~g~ 204 (253)
T TIGR01422 179 KVGDTVPDIEEGRNAGMWTVGLILSS 204 (253)
T ss_pred EECCcHHHHHHHHHCCCeEEEEecCC
Confidence 9999999999999999 5555554
No 89
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.88 E-value=7.1e-05 Score=79.66 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=90.9
Q ss_pred ceEEEEEECCEEEEEEEc--CCCcchhHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCc----------------
Q 039776 705 QTEILVSVDGELTGVLSI--SDPLKPGAHGVISILKS-MQIRSILVTGDNWGTAKSIASEVGIE---------------- 765 (922)
Q Consensus 705 ~~~l~v~~~~~~~G~~~~--~d~~r~~~~~~i~~l~~-~gi~~~~~tgd~~~~a~~ia~~~gi~---------------- 765 (922)
...+++..||+++....= .-.+.+++.++|++|++ .|++++++||+.......+.+.+++.
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~ 93 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKT 93 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCCe
Confidence 356677789988842110 11566899999999998 79999999999999998888776641
Q ss_pred ---------------------------------------------------------------------eEEecCCh--h
Q 039776 766 ---------------------------------------------------------------------TVIAEAKP--E 774 (922)
Q Consensus 766 ---------------------------------------------------------------------~~~~~~~p--~ 774 (922)
..+.++.| .
T Consensus 94 ~~~~l~~~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g~ 173 (266)
T PRK10187 94 HIVHLPDAIARDISVQLHTALAQLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRGT 173 (266)
T ss_pred eeccCChhHHHHHHHHHHHHhccCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCCC
Confidence 00011112 2
Q ss_pred hHHHHHHHHHHc----CCeEEEEcCCcccHHHHHhC----CceEEecCCcHHHHHhcCEEEeCCChhhHHHHHH
Q 039776 775 QKAEKVEELQAS----GYTVAMVGDGINDSPALVAA----DVGMAIGAGTDIAIEAADIVLMKSNLEDEITAID 840 (922)
Q Consensus 775 ~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A----~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 840 (922)
+|...++.+.+. ...++++||+.||.+|++.+ +.||+||++. ..|++.+ ++..++...+.
T Consensus 174 ~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~----~~A~~~l--~~~~~v~~~L~ 241 (266)
T PRK10187 174 NKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA----TQASWRL--AGVPDVWSWLE 241 (266)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC----CcCeEeC--CCHHHHHHHHH
Confidence 344445544432 34699999999999999999 9999999874 3467776 46666665543
No 90
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.86 E-value=5.9e-05 Score=71.20 Aligned_cols=86 Identities=27% Similarity=0.355 Sum_probs=65.9
Q ss_pred cCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc----eEEe-----------------------cCChh
Q 039776 722 ISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE----TVIA-----------------------EAKPE 774 (922)
Q Consensus 722 ~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~----~~~~-----------------------~~~p~ 774 (922)
...++.+++.+.+++|++.|++++++||.....+..+.+.+|+. .+++ +..++
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHH
Confidence 34588999999999999999999999999999999999999973 2332 11222
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCcccHHHHHhCC
Q 039776 775 QKAEKVEELQASGYTVAMVGDGINDSPALVAAD 807 (922)
Q Consensus 775 ~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~ 807 (922)
.+..+.+.+....+.++++||+.+|..+++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g 133 (139)
T cd01427 101 KLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAG 133 (139)
T ss_pred HHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcC
Confidence 233344444444567999999999999999843
No 91
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.81 E-value=7.1e-05 Score=77.75 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=79.2
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC-------ChhhHHHHHHHH-HHc---CCeEEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA-------KPEQKAEKVEEL-QAS---GYTVAM 792 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~v~~l-~~~---g~~v~~ 792 (922)
-++.|++.++++.|++.|+++.++|+........+.+.+|+..+|... .++.+.+..+.+ ++. .+.++|
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 170 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVA 170 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEE
Confidence 468899999999999999999999999999999999999997554322 122233333333 332 367999
Q ss_pred EcCCcccHHHHHhCCceEEec-CC---cHHHHHhcCEEEeCCChhhHH
Q 039776 793 VGDGINDSPALVAADVGMAIG-AG---TDIAIEAADIVLMKSNLEDEI 836 (922)
Q Consensus 793 vGDg~nD~~al~~A~vgia~~-~~---~~~~~~~ad~vl~~~~~~~l~ 836 (922)
|||..||+.+.+.|++...+- .+ .+.-...+|.++ .++.++.
T Consensus 171 igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~--~~~~dl~ 216 (222)
T PRK10826 171 LEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKL--ESLTELT 216 (222)
T ss_pred EcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheec--cCHHHHh
Confidence 999999999999999764433 22 112234577776 4566654
No 92
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.81 E-value=0.0001 Score=77.88 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=78.4
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec-----C------ChhhHHHHHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE-----A------KPEQKAEKVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~-----~------~p~~K~~~v~~l~~~g~~v~~v 793 (922)
++.|++.++++.|+++|+++.++|+.....+....+.+|+..+|.. - .|+--...++.+....+.++||
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~v 187 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVF 187 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEE
Confidence 5789999999999999999999999999999999999998754321 1 1222233444444445679999
Q ss_pred cCCcccHHHHHhCCc---eEEecCCcH-HHHHhcCEEEeCCChhh
Q 039776 794 GDGINDSPALVAADV---GMAIGAGTD-IAIEAADIVLMKSNLED 834 (922)
Q Consensus 794 GDg~nD~~al~~A~v---gia~~~~~~-~~~~~ad~vl~~~~~~~ 834 (922)
||..+|+.+.++|++ ++.+|...+ .....+|.++ +++..
T Consensus 188 gDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi--~~~~e 230 (248)
T PLN02770 188 EDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLI--KDYED 230 (248)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEe--ccchh
Confidence 999999999999994 454443222 2234688887 44554
No 93
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.73 E-value=0.00015 Score=77.50 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=78.3
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce-----EEec-CChhhH--HH-HHHHHHHc----CCeEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET-----VIAE-AKPEQK--AE-KVEELQAS----GYTVA 791 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~-----~~~~-~~p~~K--~~-~v~~l~~~----g~~v~ 791 (922)
.+.|++.++++.|++.|+++.++||.....+..+.+.+|+.. +++. -.+..| .+ +...+++. .+.++
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l 180 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACV 180 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceE
Confidence 578999999999999999999999999998888877766533 2221 111112 22 23333332 25699
Q ss_pred EEcCCcccHHHHHhCCc---eEEecCCc-------------------------HHHHHhcCEEEeCCChhhHHHHH
Q 039776 792 MVGDGINDSPALVAADV---GMAIGAGT-------------------------DIAIEAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 792 ~vGDg~nD~~al~~A~v---gia~~~~~-------------------------~~~~~~ad~vl~~~~~~~l~~~i 839 (922)
||||+.+|+.+.+.|++ |+..|... +.....+|+++ +++..+...+
T Consensus 181 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~vi--~~~~~l~~~l 254 (267)
T PRK13478 181 KVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGAHYVI--DTIADLPAVI 254 (267)
T ss_pred EEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCCCeeh--hhHHHHHHHH
Confidence 99999999999999994 66665431 22234578887 6677777655
No 94
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.72 E-value=0.00012 Score=84.77 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=84.0
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC------ChhhHHHHHHHHHH--cCCeEEEEcCC
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA------KPEQKAEKVEELQA--SGYTVAMVGDG 796 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~------~p~~K~~~v~~l~~--~g~~v~~vGDg 796 (922)
++.||+.++++.|++.|+++.++|+.....+..+.+.+|+..+|..+ .+..|.++.....+ ..+.+.||||.
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~~~v~VGDs 409 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVVGDR 409 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcceEEEEeCC
Confidence 68899999999999999999999999999999999999987543321 11234444433332 24679999999
Q ss_pred cccHHHHHhCCce---EEecCCcHHHHHhcCEEEeCCChhhHHHHHHH
Q 039776 797 INDSPALVAADVG---MAIGAGTDIAIEAADIVLMKSNLEDEITAIDL 841 (922)
Q Consensus 797 ~nD~~al~~A~vg---ia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~ 841 (922)
.+|+.+.+.|++- +..+...+.....+|+++ +++..+..++..
T Consensus 410 ~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i--~~l~el~~~l~~ 455 (459)
T PRK06698 410 LSDINAAKDNGLIAIGCNFDFAQEDELAQADIVI--DDLLELKGILST 455 (459)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEe--CCHHHHHHHHHH
Confidence 9999999999953 333433322334688887 567777776543
No 95
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.71 E-value=0.00017 Score=76.29 Aligned_cols=111 Identities=20% Similarity=0.241 Sum_probs=78.2
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec-----------CChhhHHHHHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE-----------AKPEQKAEKVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~-----------~~p~~K~~~v~~l~~~g~~v~~v 793 (922)
++.|++.++++.|+++|+++.++|+.....+..+.+.+|+..+|.. ..|+-=...++.+.-..+.++||
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~I 188 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVF 188 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEE
Confidence 5789999999999999999999999999999999999998643321 11111123344444345679999
Q ss_pred cCCcccHHHHHhCCceE-Ee-cCCcHHHHHhcCEEEeCCChhhHHH
Q 039776 794 GDGINDSPALVAADVGM-AI-GAGTDIAIEAADIVLMKSNLEDEIT 837 (922)
Q Consensus 794 GDg~nD~~al~~A~vgi-a~-~~~~~~~~~~ad~vl~~~~~~~l~~ 837 (922)
||..+|+.+.+.|++.. ++ |.........+|.++ ++++.+..
T Consensus 189 gDs~~Di~aA~~aG~~~i~v~g~~~~~~l~~ad~vi--~~~~el~~ 232 (260)
T PLN03243 189 GNSNSSVEAAHDGCMKCVAVAGKHPVYELSAGDLVV--RRLDDLSV 232 (260)
T ss_pred cCCHHHHHHHHHcCCEEEEEecCCchhhhccCCEEe--CCHHHHHH
Confidence 99999999999999642 22 322233334578876 45665543
No 96
>PLN02382 probable sucrose-phosphatase
Probab=97.69 E-value=0.00026 Score=80.05 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=87.7
Q ss_pred EECCEEEEEEEcCC--CcchhHHHHH-HHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc----------------------
Q 039776 711 SVDGELTGVLSISD--PLKPGAHGVI-SILKSMQIRSILVTGDNWGTAKSIASEVGIE---------------------- 765 (922)
Q Consensus 711 ~~~~~~~G~~~~~d--~~r~~~~~~i-~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~---------------------- 765 (922)
-.|++++.- .| .+.+...+++ +++++.|+.++++||+.......+.+++++.
T Consensus 15 DLDGTLL~~---~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~~nGt~I~~~~~~~~d 91 (413)
T PLN02382 15 DLDHTMVDH---HDPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIMSVGTEIAYGESMVPD 91 (413)
T ss_pred cCCCcCcCC---CCccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEEcCCcEEEeCCCCccC
Confidence 456777742 13 3443344444 8899999999999999999999999888862
Q ss_pred -------------------------------------e--E---------------------------------EecCCh
Q 039776 766 -------------------------------------T--V---------------------------------IAEAKP 773 (922)
Q Consensus 766 -------------------------------------~--~---------------------------------~~~~~p 773 (922)
. + +.++.|
T Consensus 92 ~~w~~~l~~~w~~~~v~~~~~~~~~l~~q~~~~~~~~Ki~~~~~~~~~~~~~~~l~~~~~~~g~~~~i~~s~~~~ldI~p 171 (413)
T PLN02382 92 HGWVEYLNKKWDREIVVEETSKFPELKLQPETEQRPHKVSFYVDKKKAQEVIKELSERLEKRGLDVKIIYSGGIDLDVLP 171 (413)
T ss_pred hhHHHHHhccCChhhHHHHHhcCCCcccCCcccCCCeEEEEEechHHhHHHHHHHHHHHHhcCCcEEEEEECCcEEEEEe
Confidence 0 0 011222
Q ss_pred h--hHHHHHHHHHHc----C---CeEEEEcCCcccHHHHHhCC-ceEEecCCcHHHHHhc--------CEEEe-CCChhh
Q 039776 774 E--QKAEKVEELQAS----G---YTVAMVGDGINDSPALVAAD-VGMAIGAGTDIAIEAA--------DIVLM-KSNLED 834 (922)
Q Consensus 774 ~--~K~~~v~~l~~~----g---~~v~~vGDg~nD~~al~~A~-vgia~~~~~~~~~~~a--------d~vl~-~~~~~~ 834 (922)
. .|...++.|.+. | ..++++||+.||.+||+.++ .||+|+++.+..++.+ +++.. +++-.+
T Consensus 172 ~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~~elk~~a~~~~~~~~~~~~a~~~~~~G 251 (413)
T PLN02382 172 QGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEELLQWYAENAKDNPKIIHATERCAAG 251 (413)
T ss_pred CCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHHHHHHHhhccCCCcEEEcCCCCccH
Confidence 2 355556665543 2 47899999999999999999 6999999999888743 55543 334556
Q ss_pred HHHHHH
Q 039776 835 EITAID 840 (922)
Q Consensus 835 l~~~i~ 840 (922)
+.++++
T Consensus 252 I~~al~ 257 (413)
T PLN02382 252 IIQAIG 257 (413)
T ss_pred HHHHHH
Confidence 666654
No 97
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.66 E-value=0.00021 Score=74.12 Aligned_cols=113 Identities=23% Similarity=0.267 Sum_probs=79.2
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc--eEE----ecCC---hhhHHHHH----HHHHHc-CCe
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE--TVI----AEAK---PEQKAEKV----EELQAS-GYT 789 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~--~~~----~~~~---p~~K~~~v----~~l~~~-g~~ 789 (922)
.++.||+.+.+++|+++|+++.++|+........+.+.+|+. .++ +.-. .+.+.++. +.+.-. .+.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 479999999999999999999999999999999999999986 432 2111 01122333 333222 367
Q ss_pred EEEEcCCcccHHHHHhCCceE--EecCC--cH--HHHHhcCEEEeCCChhhHHHH
Q 039776 790 VAMVGDGINDSPALVAADVGM--AIGAG--TD--IAIEAADIVLMKSNLEDEITA 838 (922)
Q Consensus 790 v~~vGDg~nD~~al~~A~vgi--a~~~~--~~--~~~~~ad~vl~~~~~~~l~~~ 838 (922)
++||||+.+|+.+.+.|++.. ++..+ .. .....+|.++ +++..+..+
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i--~~~~~l~~~ 218 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVL--DSVADLPAL 218 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceee--cCHHHHHHh
Confidence 999999999999999999875 23222 22 2234577776 556666554
No 98
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.63 E-value=0.00052 Score=71.85 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=46.7
Q ss_pred EEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Q 039776 707 EILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGI 764 (922)
Q Consensus 707 ~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi 764 (922)
.++...||+++- -.+...+.+.++|++|+++|+.++++||+.......+.+++|+
T Consensus 3 LIftDLDGTLLd---~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl 57 (302)
T PRK12702 3 LVLSSLDGSLLD---LEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRL 57 (302)
T ss_pred EEEEeCCCCCcC---CCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 455567787774 2455778899999999999999999999999999999999997
No 99
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.60 E-value=0.00056 Score=71.83 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=83.1
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc----eEEec------------C-Ch----hhHHHHHHH
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE----TVIAE------------A-KP----EQKAEKVEE 782 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~----~~~~~------------~-~p----~~K~~~v~~ 782 (922)
-+++||+.+.++.|++.|+++.++||-....+..+.+++|+. .++++ . .| ..|.+.+..
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 368999999999999999999999999999999999999984 33221 1 11 346554432
Q ss_pred -H----H--HcCCeEEEEcCCcccHHHHHhC---CceEEec--CC-----cHHHHHhcCEEEeCCChhhHHHHH
Q 039776 783 -L----Q--ASGYTVAMVGDGINDSPALVAA---DVGMAIG--AG-----TDIAIEAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 783 -l----~--~~g~~v~~vGDg~nD~~al~~A---~vgia~~--~~-----~~~~~~~ad~vl~~~~~~~l~~~i 839 (922)
. . .....+.++|||.||+.|..-. .--+.+| +. -+.-+++-|+|+.+|.--.++..+
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~~i 273 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVANSI 273 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHHHH
Confidence 1 1 2346799999999999996544 1223444 32 234668899999998766666654
No 100
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.55 E-value=0.00063 Score=64.04 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=88.7
Q ss_pred HHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHH
Q 039776 698 TETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKA 777 (922)
Q Consensus 698 ~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~ 777 (922)
+.+.++|.+.+.+..|.+++.. =.....|++++-+.++|.+|+++.++|..++..+...++.+|++-++....|-.+.
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~w--d~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~~ 98 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPW--DNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGRA 98 (175)
T ss_pred HHHHHcCCcEEEEeccCceecc--cCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHHH
Confidence 4567789999999999998864 24456799999999999999999999999999999999999999999888876652
Q ss_pred --HHHHHHHHcCCeEEEEcCCc-ccHHHHHhCCc
Q 039776 778 --EKVEELQASGYTVAMVGDGI-NDSPALVAADV 808 (922)
Q Consensus 778 --~~v~~l~~~g~~v~~vGDg~-nD~~al~~A~v 808 (922)
+.++.++-..+.|+||||.. .|+.+-..+++
T Consensus 99 fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~ 132 (175)
T COG2179 99 FRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGM 132 (175)
T ss_pred HHHHHHHcCCChhHEEEEcchhhhhhhcccccCc
Confidence 34444444567899999995 48877666653
No 101
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.54 E-value=0.00058 Score=64.41 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=72.9
Q ss_pred EEEEEECCEEEEEEEc-----CCCcchhHHHHHHHHHHCCCEEEEEcCCC--------HHHHHHHHHHhCCceEEecC--
Q 039776 707 EILVSVDGELTGVLSI-----SDPLKPGAHGVISILKSMQIRSILVTGDN--------WGTAKSIASEVGIETVIAEA-- 771 (922)
Q Consensus 707 ~l~v~~~~~~~G~~~~-----~d~~r~~~~~~i~~l~~~gi~~~~~tgd~--------~~~a~~ia~~~gi~~~~~~~-- 771 (922)
.+.+..|+++..-... +-++.|++.++++.|+++|+++.++|+.. ......+.+.+|+...+.-.
T Consensus 2 ~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 81 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACP 81 (132)
T ss_pred EEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 3556677777742111 23678999999999999999999999988 77788889999986322211
Q ss_pred -ChhhHHH----HHHHHH-HcCCeEEEEcC-CcccHHHHHhCCce
Q 039776 772 -KPEQKAE----KVEELQ-ASGYTVAMVGD-GINDSPALVAADVG 809 (922)
Q Consensus 772 -~p~~K~~----~v~~l~-~~g~~v~~vGD-g~nD~~al~~A~vg 809 (922)
.++.|.+ +++.++ -..+.++|||| ..+|+.+.+.+++-
T Consensus 82 ~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 82 HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCe
Confidence 1122333 444442 34567999999 59999999999864
No 102
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.54 E-value=0.00052 Score=67.81 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=77.7
Q ss_pred hccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHhCCceEEecCChhhH--H
Q 039776 701 EGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDN-WGTAKSIASEVGIETVIAEAKPEQK--A 777 (922)
Q Consensus 701 ~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~-~~~a~~ia~~~gi~~~~~~~~p~~K--~ 777 (922)
.+.+.+.+.+..|+++.-. =...+.|++.+++++|++.|+++.++|+.+ ...+..+.+.+|+..+.....|... .
T Consensus 21 ~~~~v~~vv~D~Dgtl~~~--~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~p~~~~ 98 (170)
T TIGR01668 21 KKVGIKGVVLDKDNTLVYP--DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPPGCAFR 98 (170)
T ss_pred HHCCCCEEEEecCCccccC--CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCChHHHH
Confidence 3456677777788765522 133688999999999999999999999988 6778888889998765433333222 2
Q ss_pred HHHHHHHHcCCeEEEEcCCc-ccHHHHHhCCce
Q 039776 778 EKVEELQASGYTVAMVGDGI-NDSPALVAADVG 809 (922)
Q Consensus 778 ~~v~~l~~~g~~v~~vGDg~-nD~~al~~A~vg 809 (922)
.+++.+....+.++||||.. .|..+.+.+++-
T Consensus 99 ~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~ 131 (170)
T TIGR01668 99 RAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSY 131 (170)
T ss_pred HHHHHcCCCHHHEEEECCcchHHHHHHHHcCCe
Confidence 23333333356799999998 799999999953
No 103
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.51 E-value=0.00049 Score=80.13 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=46.8
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Q 039776 705 QTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGI 764 (922)
Q Consensus 705 ~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi 764 (922)
.+.++...||+++.- .+...+.+.++|++|+++|+.++++||+.......+++++|+
T Consensus 416 ~KLIfsDLDGTLLd~---d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 416 KKIVYTDLDGTLLNP---LTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred eeEEEEECcCCCcCC---CCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 455666788888742 223556789999999999999999999999999999999886
No 104
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.49 E-value=0.00042 Score=71.66 Aligned_cols=88 Identities=19% Similarity=0.125 Sum_probs=64.6
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCC----CHHHHHHHHHHhCCceEEec-----CChhhHHHHHHHHHHcCCeEEEEcC
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGD----NWGTAKSIASEVGIETVIAE-----AKPEQKAEKVEELQASGYTVAMVGD 795 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd----~~~~a~~ia~~~gi~~~~~~-----~~p~~K~~~v~~l~~~g~~v~~vGD 795 (922)
.+.+++++.++.++++|+++.++|+. ...++..+.+.+|++..+.. .....|..-...+++.+ .++|+||
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~-i~i~vGD 192 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKN-IRIHYGD 192 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCC-CeEEEeC
Confidence 35556999999999999999999998 77799999999999754321 11111121123444444 5899999
Q ss_pred CcccHHHHHhCC---ceEEec
Q 039776 796 GINDSPALVAAD---VGMAIG 813 (922)
Q Consensus 796 g~nD~~al~~A~---vgia~~ 813 (922)
..||..+.+.|+ +++.+|
T Consensus 193 s~~DI~aAk~AGi~~I~V~~g 213 (237)
T TIGR01672 193 SDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred CHHHHHHHHHCCCCEEEEEec
Confidence 999999999999 456666
No 105
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.49 E-value=0.00039 Score=76.61 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=79.0
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC-----------ChhhHHHHHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA-----------KPEQKAEKVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~-----------~p~~K~~~v~~l~~~g~~v~~v 793 (922)
++.||+.++++.|+++|+++.++|+.....+..+.+.+|+..+|..+ .|+-=...++.+.-..+.++||
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~I 295 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVF 295 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 47899999999999999999999999999999999999986533221 1122233444444456789999
Q ss_pred cCCcccHHHHHhCCceE-EecCCcH-HHHHhcCEEEeCCChhhHH
Q 039776 794 GDGINDSPALVAADVGM-AIGAGTD-IAIEAADIVLMKSNLEDEI 836 (922)
Q Consensus 794 GDg~nD~~al~~A~vgi-a~~~~~~-~~~~~ad~vl~~~~~~~l~ 836 (922)
||..+|+.|.+.|++-. ++.++.+ .....+|.++ +++..+.
T Consensus 296 GDS~~DIeAAk~AGm~~IgV~~~~~~~~l~~Ad~iI--~s~~EL~ 338 (381)
T PLN02575 296 GNSNQTVEAAHDARMKCVAVASKHPIYELGAADLVV--RRLDELS 338 (381)
T ss_pred cCCHHHHHHHHHcCCEEEEECCCCChhHhcCCCEEE--CCHHHHH
Confidence 99999999999999542 2223221 1223588876 5566653
No 106
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.46 E-value=0.00084 Score=67.17 Aligned_cols=114 Identities=27% Similarity=0.269 Sum_probs=71.1
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCH---------------HHHHHHHHHhCC--ceEEec------------CChhh
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNW---------------GTAKSIASEVGI--ETVIAE------------AKPEQ 775 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~---------------~~a~~ia~~~gi--~~~~~~------------~~p~~ 775 (922)
.+.||+.+++++|++.|+++.++|+... .....+.+..|+ +.++.. ..|+-
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~~~KP~p~~ 108 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCDCRKPKPGM 108 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcCCCCCHHH
Confidence 3679999999999999999999998762 112233445665 333321 11222
Q ss_pred HHHHHHHHHHcCCeEEEEcCCcccHHHHHhCCce---EEecCCcH-HHHHhc--CEEEeCCChhhHHHHHH
Q 039776 776 KAEKVEELQASGYTVAMVGDGINDSPALVAADVG---MAIGAGTD-IAIEAA--DIVLMKSNLEDEITAID 840 (922)
Q Consensus 776 K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg---ia~~~~~~-~~~~~a--d~vl~~~~~~~l~~~i~ 840 (922)
-...++.+.-..+.++||||..+|+.+.+.|++. +..|.... .....+ |.++ +++..+..++.
T Consensus 109 ~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii--~~l~el~~~l~ 177 (181)
T PRK08942 109 LLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVL--DSLADLPQALK 177 (181)
T ss_pred HHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceee--cCHHHHHHHHH
Confidence 2334444444457899999999999999999964 22222221 122335 7776 56777666543
No 107
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.44 E-value=0.00036 Score=70.95 Aligned_cols=84 Identities=23% Similarity=0.263 Sum_probs=64.7
Q ss_pred CCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEe----------cCChhhHHHHHHHHHHcCCeEEE
Q 039776 723 SDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIA----------EAKPEQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~----------~~~p~~K~~~v~~l~~~g~~v~~ 792 (922)
.+++.+++.++++.|++.|+++.++||.....+..+.+.+|+..++. ...|+.-..+++.+....+.++|
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 34566777999999999999999999999999999999999975442 12233224445555545678999
Q ss_pred EcCCcccHHHHHhC
Q 039776 793 VGDGINDSPALVAA 806 (922)
Q Consensus 793 vGDg~nD~~al~~A 806 (922)
|||+.+|+.+.++|
T Consensus 184 vGD~~~Di~aA~~a 197 (197)
T TIGR01548 184 VGDTVDDIITGRKA 197 (197)
T ss_pred EeCCHHHHHHHHhC
Confidence 99999999987764
No 108
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.42 E-value=0.00043 Score=71.78 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=64.4
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec---------CCh--hhHHHHHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE---------AKP--EQKAEKVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~---------~~p--~~K~~~v~~l~~~g~~v~~v 793 (922)
++.|++.+++++|++.|++++++|+-+........+.+|+..+|.. ..| +-=..+.+.+......++||
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~i 173 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMV 173 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEE
Confidence 5789999999999999999999999988888888899998643321 112 11122333333334679999
Q ss_pred cCCc-ccHHHHHhCCce
Q 039776 794 GDGI-NDSPALVAADVG 809 (922)
Q Consensus 794 GDg~-nD~~al~~A~vg 809 (922)
||.. +|+.+.+.|++-
T Consensus 174 gDs~~~di~~A~~aG~~ 190 (221)
T TIGR02253 174 GDRLDKDIKGAKNLGMK 190 (221)
T ss_pred CCChHHHHHHHHHCCCE
Confidence 9998 999999999964
No 109
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.41 E-value=0.0011 Score=68.69 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=43.7
Q ss_pred EEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Q 039776 709 LVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGI 764 (922)
Q Consensus 709 ~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi 764 (922)
++-.||+++- .+...+++.++|++|+++|++++++||+....+..+.+++|+
T Consensus 3 ~~DlDGTLl~----~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 3 FTDLDGTLLP----PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred EEeCCCCCcC----CCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 3445666654 456677899999999999999999999999999999999997
No 110
>PTZ00174 phosphomannomutase; Provisional
Probab=97.40 E-value=0.00093 Score=70.50 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=42.7
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Q 039776 705 QTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIAS 760 (922)
Q Consensus 705 ~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~ 760 (922)
.+.+.+-.||+++. =..++.+...++|++++++|++++++||++........+
T Consensus 5 ~klia~DlDGTLL~---~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 5 KTILLFDVDGTLTK---PRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CeEEEEECcCCCcC---CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 45566778888773 233588999999999999999999999999987766554
No 111
>PRK11590 hypothetical protein; Provisional
Probab=97.39 E-value=0.0012 Score=67.96 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=72.8
Q ss_pred CcchhHHHHH-HHHHHCCCEEEEEcCCCHHHHHHHHHHhCC---ceEEe--------------cCChhhHHHHHHHH-HH
Q 039776 725 PLKPGAHGVI-SILKSMQIRSILVTGDNWGTAKSIASEVGI---ETVIA--------------EAKPEQKAEKVEEL-QA 785 (922)
Q Consensus 725 ~~r~~~~~~i-~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi---~~~~~--------------~~~p~~K~~~v~~l-~~ 785 (922)
.++|++.+.| +.+++.|++++++|+.....+..+++.+|+ +++.+ .+..++|..-++.. ..
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~~ 174 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIGT 174 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhCC
Confidence 4589999999 578999999999999999999999999994 43222 24457888777654 33
Q ss_pred cCCeEEEEcCCcccHHHHHhCCceEEecCC
Q 039776 786 SGYTVAMVGDGINDSPALVAADVGMAIGAG 815 (922)
Q Consensus 786 ~g~~v~~vGDg~nD~~al~~A~vgia~~~~ 815 (922)
......+-||+.||.|||+.|+.+++++..
T Consensus 175 ~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~ 204 (211)
T PRK11590 175 PLRLYSGYSDSKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CcceEEEecCCcccHHHHHhCCCCEEECcc
Confidence 344566889999999999999999999753
No 112
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.37 E-value=0.0008 Score=69.56 Aligned_cols=85 Identities=21% Similarity=0.208 Sum_probs=64.5
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHhCC--ce----EEecCCh--hhHHHHHHHHHHcCCeEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDN----WGTAKSIASEVGI--ET----VIAEAKP--EQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~----~~~a~~ia~~~gi--~~----~~~~~~p--~~K~~~v~~l~~~g~~v~~ 792 (922)
.+.|++++.++.|+++|+++.++||+. ..++..+.+.+|+ +. +++.-++ ++|...+ ++.+ .++|
T Consensus 114 ~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~l---~~~~-i~I~ 189 (237)
T PRK11009 114 IPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQWL---KKKN-IRIF 189 (237)
T ss_pred cchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHHH---HhcC-CeEE
Confidence 477889999999999999999999964 6688999999999 42 3332221 3455433 3444 5899
Q ss_pred EcCCcccHHHHHhCCc---eEEec
Q 039776 793 VGDGINDSPALVAADV---GMAIG 813 (922)
Q Consensus 793 vGDg~nD~~al~~A~v---gia~~ 813 (922)
+||..+|..+.+.|++ ++.+|
T Consensus 190 IGDs~~Di~aA~~AGi~~I~v~~G 213 (237)
T PRK11009 190 YGDSDNDITAAREAGARGIRILRA 213 (237)
T ss_pred EcCCHHHHHHHHHcCCcEEEEecC
Confidence 9999999999999994 44555
No 113
>PRK11587 putative phosphatase; Provisional
Probab=97.36 E-value=0.0009 Score=69.24 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=73.7
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc---eEEec-C----Ch--hhHHHHHHHHHHcCCeEEEEc
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE---TVIAE-A----KP--EQKAEKVEELQASGYTVAMVG 794 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~---~~~~~-~----~p--~~K~~~v~~l~~~g~~v~~vG 794 (922)
++.|++.++++.|+++|+++.++|+.....+....+..|+. .+.+. - .| +-=....+.+.-..+.++|||
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~ig 162 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVE 162 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEe
Confidence 57899999999999999999999998877777777777774 22221 1 12 111223333433457899999
Q ss_pred CCcccHHHHHhCCce-EEecCCc-HHHHHhcCEEEeCCChhhH
Q 039776 795 DGINDSPALVAADVG-MAIGAGT-DIAIEAADIVLMKSNLEDE 835 (922)
Q Consensus 795 Dg~nD~~al~~A~vg-ia~~~~~-~~~~~~ad~vl~~~~~~~l 835 (922)
|..+|+.+.+.|++. |++..+. ......+|.++ +++..+
T Consensus 163 Ds~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~--~~~~el 203 (218)
T PRK11587 163 DAPAGVLSGLAAGCHVIAVNAPADTPRLDEVDLVL--HSLEQL 203 (218)
T ss_pred cchhhhHHHHHCCCEEEEECCCCchhhhccCCEEe--cchhhe
Confidence 999999999999974 4444332 22334577776 344443
No 114
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.35 E-value=0.00068 Score=73.06 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=73.1
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc------eEE-ecCChhhH--H----HHHHHHHHcCCeEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE------TVI-AEAKPEQK--A----EKVEELQASGYTVA 791 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~------~~~-~~~~p~~K--~----~~v~~l~~~g~~v~ 791 (922)
++.|++.+.++.|++.|+++.++|+.+......+.+..+.. .++ +...+..| . .+++.+.-....++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 223 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCV 223 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEE
Confidence 57899999999999999999999999888887776655321 122 11111122 2 23444443456799
Q ss_pred EEcCCcccHHHHHhCCceEE---ecCCcHHHHHhcCEEEeCCChhhHH
Q 039776 792 MVGDGINDSPALVAADVGMA---IGAGTDIAIEAADIVLMKSNLEDEI 836 (922)
Q Consensus 792 ~vGDg~nD~~al~~A~vgia---~~~~~~~~~~~ad~vl~~~~~~~l~ 836 (922)
||||+.+|+.+.+.|++... .|.........+|+++ +++.++.
T Consensus 224 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi--~~~~~l~ 269 (286)
T PLN02779 224 VVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVF--DCLGDVP 269 (286)
T ss_pred EEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEE--CChhhcc
Confidence 99999999999999995533 3322222224588887 4455443
No 115
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.32 E-value=0.0013 Score=67.42 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=71.0
Q ss_pred CcchhHHHHHH-HHHHCCCEEEEEcCCCHHHHHHHHHHhCC---ceEEe--------------cCChhhHHHHHHHHH-H
Q 039776 725 PLKPGAHGVIS-ILKSMQIRSILVTGDNWGTAKSIASEVGI---ETVIA--------------EAKPEQKAEKVEELQ-A 785 (922)
Q Consensus 725 ~~r~~~~~~i~-~l~~~gi~~~~~tgd~~~~a~~ia~~~gi---~~~~~--------------~~~p~~K~~~v~~l~-~ 785 (922)
.++|++.++|+ .++++|++++++|+.....+..+++..++ +++.+ .+..++|..-++..- .
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~~ 173 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIGS 173 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhCC
Confidence 47899999995 78999999999999999999999988544 43222 134577887666543 2
Q ss_pred cCCeEEEEcCCcccHHHHHhCCceEEecC
Q 039776 786 SGYTVAMVGDGINDSPALVAADVGMAIGA 814 (922)
Q Consensus 786 ~g~~v~~vGDg~nD~~al~~A~vgia~~~ 814 (922)
......+-||+.||.|||+.||.+++++.
T Consensus 174 ~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp 202 (210)
T TIGR01545 174 PLKLYSGYSDSKQDNPLLAFCEHRWRVSK 202 (210)
T ss_pred ChhheEEecCCcccHHHHHhCCCcEEECc
Confidence 33456688999999999999999999864
No 116
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.30 E-value=0.00069 Score=73.90 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=69.6
Q ss_pred cCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce-EEe------------------cCChhhHHHHHHH
Q 039776 722 ISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET-VIA------------------EAKPEQKAEKVEE 782 (922)
Q Consensus 722 ~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~-~~~------------------~~~p~~K~~~v~~ 782 (922)
..+++.+++.++++.|++.|++++++||.....+..+.+.+|+.. .|. +..|+-+...++.
T Consensus 184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 467899999999999999999999999999999999999988874 221 1123334445554
Q ss_pred HHH-cCCeEEEEcCCcccHHHHHhCCce
Q 039776 783 LQA-SGYTVAMVGDGINDSPALVAADVG 809 (922)
Q Consensus 783 l~~-~g~~v~~vGDg~nD~~al~~A~vg 809 (922)
+.. ....++||||..+|+.+.+.|++.
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~ 291 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLE 291 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCe
Confidence 433 236799999999999999999965
No 117
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.28 E-value=0.0006 Score=70.73 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=64.9
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEE----e-cCC--hhhHHHHHHH----HHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVI----A-EAK--PEQKAEKVEE----LQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~----~-~~~--p~~K~~~v~~----l~~~g~~v~~v 793 (922)
++.|++.++++.|+++|+++.++|+.....+....+.+|+..+| + .-. ++.+.++... +.-..+.++||
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~i 172 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFI 172 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEE
Confidence 67899999999999999999999999888888888889985322 2 111 1222333333 33335679999
Q ss_pred cCCcccHHHHHhCCce
Q 039776 794 GDGINDSPALVAADVG 809 (922)
Q Consensus 794 GDg~nD~~al~~A~vg 809 (922)
||..+|+.+.+.|++.
T Consensus 173 gDs~~di~aA~~aG~~ 188 (224)
T PRK14988 173 DDSEPILDAAAQFGIR 188 (224)
T ss_pred cCCHHHHHHHHHcCCe
Confidence 9999999999999986
No 118
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.28 E-value=0.24 Score=60.81 Aligned_cols=66 Identities=27% Similarity=0.471 Sum_probs=56.5
Q ss_pred ceEEEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCccc
Q 039776 69 TQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAI 136 (922)
Q Consensus 69 ~~~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~ 136 (922)
..+..+.++||+|++|+..+++.+.+.+|+.++++++.+++..+.+++.. . +.+.+.++..||++.
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~Gy~a~ 117 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAGFSLR 117 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcccccc
Confidence 34567899999999999999999999999999999999999999988763 3 667777888888754
No 119
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.26 E-value=0.0012 Score=67.61 Aligned_cols=53 Identities=21% Similarity=0.413 Sum_probs=43.1
Q ss_pred EEEECCEEEEEEEcC-CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Q 039776 709 LVSVDGELTGVLSIS-DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGI 764 (922)
Q Consensus 709 ~v~~~~~~~G~~~~~-d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi 764 (922)
.+..|++++.- . -++.+++.+++++|++.|++++++||+.......+.+.++.
T Consensus 3 ~~D~DgTL~~~---~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~ 56 (204)
T TIGR01484 3 FFDLDGTLLDP---NAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPL 56 (204)
T ss_pred EEeCcCCCcCC---CCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCC
Confidence 44567777641 1 25789999999999999999999999999999999887654
No 120
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.22 E-value=0.0025 Score=78.21 Aligned_cols=143 Identities=17% Similarity=0.234 Sum_probs=99.1
Q ss_pred chHHHHHHHhccCceEEEEEECCEEEEEEEcC--CCcchhHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCc---
Q 039776 692 DTEEMLTETEGMAQTEILVSVDGELTGVLSIS--DPLKPGAHGVISILKS-MQIRSILVTGDNWGTAKSIASEVGIE--- 765 (922)
Q Consensus 692 ~~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~--d~~r~~~~~~i~~l~~-~gi~~~~~tgd~~~~a~~ia~~~gi~--- 765 (922)
+.+.....+....++.+++.+||+++...... ..+.+++.+++++|.+ .|+.++++||+............++.
T Consensus 479 ~~~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~lia 558 (726)
T PRK14501 479 AAEEIIARYRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLVA 558 (726)
T ss_pred CHHHHHHHHHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEEE
Confidence 34566667766667888899999998642111 2367899999999999 59999999999999888776655541
Q ss_pred --------------------------------------------------------------------------------
Q 039776 766 -------------------------------------------------------------------------------- 765 (922)
Q Consensus 766 -------------------------------------------------------------------------------- 765 (922)
T Consensus 559 enG~~i~~~~~~w~~~~~~~~~w~~~v~~il~~~~~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~ 638 (726)
T PRK14501 559 EHGAWSRAPGGEWQLLEPVATEWKDAVRPILEEFVDRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNA 638 (726)
T ss_pred eCCEEEeCCCCceEECCCcchhHHHHHHHHHHHHHhcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence
Q ss_pred -------eEEecCCh--hhHHHHHHHHHHc--CCeEEEEcCCcccHHHHHhC---CceEEecCCcHHHHHhcCEEEeCCC
Q 039776 766 -------TVIAEAKP--EQKAEKVEELQAS--GYTVAMVGDGINDSPALVAA---DVGMAIGAGTDIAIEAADIVLMKSN 831 (922)
Q Consensus 766 -------~~~~~~~p--~~K~~~v~~l~~~--g~~v~~vGDg~nD~~al~~A---~vgia~~~~~~~~~~~ad~vl~~~~ 831 (922)
..+.++.| -+|...++.+.+. ...++++||+.||.+|++.+ +.+|+||++ +.+|++.+.+
T Consensus 639 ~~~v~~g~~~veV~p~~vnKG~al~~ll~~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~----~s~A~~~l~~-- 712 (726)
T PRK14501 639 PLEVLRGNKVVEVRPAGVNKGRAVRRLLEAGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG----ESRARYRLPS-- 712 (726)
T ss_pred CeEEEECCeEEEEEECCCCHHHHHHHHHhcCCCCEEEEECCCCChHHHHHhcccCceEEEECCC----CCcceEeCCC--
Confidence 00001111 2344555555442 24799999999999999986 588888874 4578888853
Q ss_pred hhhHHHHHH
Q 039776 832 LEDEITAID 840 (922)
Q Consensus 832 ~~~l~~~i~ 840 (922)
.+++..+++
T Consensus 713 ~~eV~~~L~ 721 (726)
T PRK14501 713 QREVRELLR 721 (726)
T ss_pred HHHHHHHHH
Confidence 455555443
No 121
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.19 E-value=0.00087 Score=69.62 Aligned_cols=111 Identities=21% Similarity=0.241 Sum_probs=75.6
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce----EEec-C----ChhhH--HHHHHHH-HHcCCeEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET----VIAE-A----KPEQK--AEKVEEL-QASGYTVAM 792 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~----~~~~-~----~p~~K--~~~v~~l-~~~g~~v~~ 792 (922)
++.|++.+++++|++. +++.++|+........+.+.+|+.. +++. - .|+.. ...++.+ .-..+.++|
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ 175 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLM 175 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEE
Confidence 5789999999999999 9999999999999999999999853 3321 1 12211 2233333 323457999
Q ss_pred EcCCc-ccHHHHHhCCce---EEecCCcHHHHHhcCEEEeCCChhhHHHH
Q 039776 793 VGDGI-NDSPALVAADVG---MAIGAGTDIAIEAADIVLMKSNLEDEITA 838 (922)
Q Consensus 793 vGDg~-nD~~al~~A~vg---ia~~~~~~~~~~~ad~vl~~~~~~~l~~~ 838 (922)
|||.. +|+.+.+.+++. +..+..++.....+|.++ +++..|..+
T Consensus 176 igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~--~~~~el~~~ 223 (224)
T TIGR02254 176 IGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEI--RSLEELYEI 223 (224)
T ss_pred ECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEE--CCHHHHHhh
Confidence 99998 899999999963 333322222223466666 566666543
No 122
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.18 E-value=0.0014 Score=66.70 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=66.2
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec---------CChhhH--HHHHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE---------AKPEQK--AEKVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~---------~~p~~K--~~~v~~l~~~g~~v~~v 793 (922)
++.|++.+++++|+++|+++.++|+-+........+.+|+..+|.. ..|... ..+.+.+.-..+.+++|
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~v 171 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFV 171 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEE
Confidence 5789999999999999999999999999999999999998643321 122111 23334444345679999
Q ss_pred cCCcccHHHHHhCCceEE
Q 039776 794 GDGINDSPALVAADVGMA 811 (922)
Q Consensus 794 GDg~nD~~al~~A~vgia 811 (922)
||+.+|+.+.+.+++-..
T Consensus 172 gD~~~Di~~A~~~G~~~i 189 (198)
T TIGR01428 172 ASNPWDLGGAKKFGFKTA 189 (198)
T ss_pred eCCHHHHHHHHHCCCcEE
Confidence 999999999999987543
No 123
>PLN02940 riboflavin kinase
Probab=97.17 E-value=0.00098 Score=74.81 Aligned_cols=103 Identities=19% Similarity=0.204 Sum_probs=70.9
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH-HhCCce----EEec-------CChhhHHHHHHHHHHcCCeEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIAS-EVGIET----VIAE-------AKPEQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~-~~gi~~----~~~~-------~~p~~K~~~v~~l~~~g~~v~~ 792 (922)
++.|++.++++.|+++|+++.++|+.....+....+ ..|+.. +.+. ..|+-=..+++.+.-..+.++|
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~ 172 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLV 172 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 577999999999999999999999998888877665 678743 2221 1112223334444444678999
Q ss_pred EcCCcccHHHHHhCCce---EEecCCcHHHHHhcCEEE
Q 039776 793 VGDGINDSPALVAADVG---MAIGAGTDIAIEAADIVL 827 (922)
Q Consensus 793 vGDg~nD~~al~~A~vg---ia~~~~~~~~~~~ad~vl 827 (922)
|||+.+|+.+.+.|++. +..+.........+|.++
T Consensus 173 VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i 210 (382)
T PLN02940 173 IEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVI 210 (382)
T ss_pred EeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEe
Confidence 99999999999999965 333322233334566665
No 124
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.16 E-value=0.0019 Score=64.19 Aligned_cols=109 Identities=27% Similarity=0.228 Sum_probs=67.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCH---------------HHHHHHHHHhCCc--eEEe-cCC-------------hh
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNW---------------GTAKSIASEVGIE--TVIA-EAK-------------PE 774 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~---------------~~a~~ia~~~gi~--~~~~-~~~-------------p~ 774 (922)
+.|++.+++++|+++|+++.++|+-+. .....+..+.|+. .++. ... .+
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K 106 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEEFRQVCDCRK 106 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcccccccCCCCCCC
Confidence 578999999999999999999998764 1122334444443 3322 100 11
Q ss_pred hHHHHHH----HHHHcCCeEEEEcCCcccHHHHHhCCceE--EecCCc---HHHHHhcCEEEeCCChhhHH
Q 039776 775 QKAEKVE----ELQASGYTVAMVGDGINDSPALVAADVGM--AIGAGT---DIAIEAADIVLMKSNLEDEI 836 (922)
Q Consensus 775 ~K~~~v~----~l~~~g~~v~~vGDg~nD~~al~~A~vgi--a~~~~~---~~~~~~ad~vl~~~~~~~l~ 836 (922)
.+..++. .+.-....++||||..+|+.+.+.|++.. .+..|. ......+|.++ +++..|.
T Consensus 107 P~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i--~~~~el~ 175 (176)
T TIGR00213 107 PKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVL--NSLADLP 175 (176)
T ss_pred CCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEe--ccHHHhh
Confidence 1233333 33333467999999999999999999753 333332 11223488888 4565553
No 125
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.13 E-value=0.0017 Score=63.83 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=68.4
Q ss_pred cCCCcchhHHHHHHHHHHCCCEEEEEcCC-CHHHHHHHHHHhCCc---------eEEe-----cCChhhH--HHHHHHHH
Q 039776 722 ISDPLKPGAHGVISILKSMQIRSILVTGD-NWGTAKSIASEVGIE---------TVIA-----EAKPEQK--AEKVEELQ 784 (922)
Q Consensus 722 ~~d~~r~~~~~~i~~l~~~gi~~~~~tgd-~~~~a~~ia~~~gi~---------~~~~-----~~~p~~K--~~~v~~l~ 784 (922)
-+-+++|++.++++.|+++|+++.++|+. ....+..+...+|+. .+|. +-.+..| ..+.+.+.
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~ 121 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVN 121 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhh
Confidence 34467899999999999999999999976 888899999999986 4332 2112223 33455554
Q ss_pred Hc------CCeEEEEcCCcccHHHHHhCCceEEe
Q 039776 785 AS------GYTVAMVGDGINDSPALVAADVGMAI 812 (922)
Q Consensus 785 ~~------g~~v~~vGDg~nD~~al~~A~vgia~ 812 (922)
+. .+.++||||...|+.+.++|++-...
T Consensus 122 ~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~ 155 (174)
T TIGR01685 122 KVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCY 155 (174)
T ss_pred hcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEE
Confidence 33 36799999999999999999976544
No 126
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.003 Score=71.03 Aligned_cols=148 Identities=22% Similarity=0.327 Sum_probs=116.2
Q ss_pred CEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc----------------------------
Q 039776 714 GELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE---------------------------- 765 (922)
Q Consensus 714 ~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~---------------------------- 765 (922)
..|.|++....+.+++....|+.|-++-++.+..|-.++...+-.|.++||.
T Consensus 815 QIf~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiEaGWNCHISLa~~~d~Pg~e~~pa~~q~a 894 (1354)
T KOG4383|consen 815 QIFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIEAGWNCHISLAEEEDAPGREAGPAHEQFA 894 (1354)
T ss_pred chhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhccccccceeEEeccCCCCCcccCCCCChhhh
Confidence 4789999999999999999999999999999999999999999999999993
Q ss_pred ---------------------------------------------------------------------------eEEec
Q 039776 766 ---------------------------------------------------------------------------TVIAE 770 (922)
Q Consensus 766 ---------------------------------------------------------------------------~~~~~ 770 (922)
..|.+
T Consensus 895 ~qkpSlhddlnqia~ddaeg~lL~~Eeg~~dliSfq~~dsdi~kf~ed~N~AkLPrGihnVRPHL~~iDNVPLLV~LFTD 974 (1354)
T KOG4383|consen 895 AQKPSLHDDLNQIALDDAEGELLDCEEGARDLISFQKMDSDIAKFAEDPNIAKLPRGIHNVRPHLDEIDNVPLLVGLFTD 974 (1354)
T ss_pred ccCcchhHHHHHhhhcccccceeehhhcccCCccccccccchhhhcCCCchhhcCcchhhcCcccccccCcceeeeeccC
Confidence 36788
Q ss_pred CChhhHHHHHHHHHHcCCeEEEEcCCcccH--HHHHhCCceEEecC-------------CcHHH-HHhcC----------
Q 039776 771 AKPEQKAEKVEELQASGYTVAMVGDGINDS--PALVAADVGMAIGA-------------GTDIA-IEAAD---------- 824 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~--~al~~A~vgia~~~-------------~~~~~-~~~ad---------- 824 (922)
.+|+.-.+.|+..|+.|+.++.+|...|-. --+-+||++|++.. ++... .++.|
T Consensus 975 cnpeamcEMIeIMQE~GEVtcclGS~aN~rNSciflkadISialD~l~~~~C~~e~fg~assismaqandglsplQiSgq 1054 (1354)
T KOG4383|consen 975 CNPEAMCEMIEIMQENGEVTCCLGSCANARNSCIFLKADISIALDDLEEPACRLEDFGVASSISMAQANDGLSPLQISGQ 1054 (1354)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEeccccccccceEEEccceeEEeccCCCccceecccccchhhhhhhhcCCCCceeeccc
Confidence 899999999999999999999999998843 34478999998853 11111 12222
Q ss_pred -------EEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039776 825 -------IVLMKSNLEDEITAIDLSRKTFSRIRINYIWALGYNL 861 (922)
Q Consensus 825 -------~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~ 861 (922)
+-+....+-.+..+|.-+|.....+|+.+.|.+...+
T Consensus 1055 LnaL~c~~~f~~ee~ikiirLIe~ARHa~~g~R~cfLFiLq~qL 1098 (1354)
T KOG4383|consen 1055 LNALACDFRFDHEELIKIIRLIECARHAMSGFRHCFLFILQAQL 1098 (1354)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1111122334567888899999999999988665443
No 127
>PRK09449 dUMP phosphatase; Provisional
Probab=97.10 E-value=0.0015 Score=67.95 Aligned_cols=112 Identities=19% Similarity=0.239 Sum_probs=74.7
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce----EEe-cCC--hhhHHHHHHH-HHHcC----CeEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET----VIA-EAK--PEQKAEKVEE-LQASG----YTVAM 792 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~----~~~-~~~--p~~K~~~v~~-l~~~g----~~v~~ 792 (922)
++.|++.+++++|+ .|+++.++|+.....+....+.+|+.. +++ .-. ++.+.++... +++.| +.++|
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~ 173 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLM 173 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 47899999999999 689999999998888888888999853 222 211 1122233332 22222 57999
Q ss_pred EcCCc-ccHHHHHhCCce-EEecC-CcH-HHHHhcCEEEeCCChhhHHHHH
Q 039776 793 VGDGI-NDSPALVAADVG-MAIGA-GTD-IAIEAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 793 vGDg~-nD~~al~~A~vg-ia~~~-~~~-~~~~~ad~vl~~~~~~~l~~~i 839 (922)
|||.. +|+.+.+.|++- |.+.. +.. .....+|.++ +++..+..++
T Consensus 174 vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i--~~~~el~~~l 222 (224)
T PRK09449 174 VGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQV--SSLSELEQLL 222 (224)
T ss_pred EcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEE--CCHHHHHHHH
Confidence 99998 699999999975 33331 211 1112467776 5677776654
No 128
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.00 E-value=0.0025 Score=62.51 Aligned_cols=116 Identities=26% Similarity=0.452 Sum_probs=88.5
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc---------------------------------------
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE--------------------------------------- 765 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~--------------------------------------- 765 (922)
++-|++.++++.|.+. +..+++|-...+-++++|..+|++
T Consensus 83 ~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~geel 161 (315)
T COG4030 83 KLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGEEL 161 (315)
T ss_pred ccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHHHH
Confidence 4679999999998876 666777777888899999999984
Q ss_pred -----eEEecCChhhHHHHHHHHHHcC------------------CeEEEEcCCcccHHHHHhCC--ceEEec-CCcHHH
Q 039776 766 -----TVIAEAKPEQKAEKVEELQASG------------------YTVAMVGDGINDSPALVAAD--VGMAIG-AGTDIA 819 (922)
Q Consensus 766 -----~~~~~~~p~~K~~~v~~l~~~g------------------~~v~~vGDg~nD~~al~~A~--vgia~~-~~~~~~ 819 (922)
.+|.++.|.+-.+++...+.-| ...++|||++.|..||+.+. =|+|+. +|.+-+
T Consensus 162 fe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~sa~~VGDSItDv~ml~~~rgrGglAvaFNGNeYa 241 (315)
T COG4030 162 FEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEAARGRGGLAVAFNGNEYA 241 (315)
T ss_pred HHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcceeEecCcccchHHHHHhhccCceEEEecCCccc
Confidence 3556666655444444443321 24789999999999999886 346666 788888
Q ss_pred HHhcCEEEeCCChhhHHHHHHH
Q 039776 820 IEAADIVLMKSNLEDEITAIDL 841 (922)
Q Consensus 820 ~~~ad~vl~~~~~~~l~~~i~~ 841 (922)
...||+.+.+.+...+..+|.+
T Consensus 242 l~eAdVAvisp~~~a~~pviel 263 (315)
T COG4030 242 LKEADVAVISPTAMAEAPVIEL 263 (315)
T ss_pred ccccceEEeccchhhhhHHHHH
Confidence 8999999999988888777764
No 129
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.91 E-value=0.0016 Score=65.31 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=61.3
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC-------ChhhHHHHHH----HHHHcCCeEEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA-------KPEQKAEKVE----ELQASGYTVAM 792 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~v~----~l~~~g~~v~~ 792 (922)
-++.|++.++++.|++.|+++.++|+. ..+..+.+.+|+..++..+ .+..+.++.. .+....+.++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 164 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVV 164 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 468999999999999999999999987 5677888889986433211 1111223333 23223467999
Q ss_pred EcCCcccHHHHHhCCce
Q 039776 793 VGDGINDSPALVAADVG 809 (922)
Q Consensus 793 vGDg~nD~~al~~A~vg 809 (922)
|||..+|+.+.+.|++.
T Consensus 165 IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 165 FEDALAGVQAARAAGMF 181 (185)
T ss_pred EeCcHhhHHHHHHCCCe
Confidence 99999999999999874
No 130
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.88 E-value=0.0044 Score=49.08 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=53.2
Q ss_pred ceeeeecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhC
Q 039776 147 KIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTA 208 (922)
Q Consensus 147 ~~~~~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g 208 (922)
+..+.+.|+.|.+|++.+++.+...+++....+++..+...+.|++.......+...++..|
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 64 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAG 64 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcC
Confidence 35688999999999999999999999999999999999999999877666666666666655
No 131
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.87 E-value=0.0042 Score=59.76 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=61.9
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCH---------------HHHHHHHHHhCCce---EEecC-------ChhhHHHH
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNW---------------GTAKSIASEVGIET---VIAEA-------KPEQKAEK 779 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~---------------~~a~~ia~~~gi~~---~~~~~-------~p~~K~~~ 779 (922)
++.|++.++++.|++.|+++.++|+... .....+.+.+|+.. ++... ....+.++
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 4689999999999999999999998763 45567778899862 22211 11223444
Q ss_pred HHHH----HHcCCeEEEEcCCcccHHHHHhCCceE
Q 039776 780 VEEL----QASGYTVAMVGDGINDSPALVAADVGM 810 (922)
Q Consensus 780 v~~l----~~~g~~v~~vGDg~nD~~al~~A~vgi 810 (922)
.... .-..+.++||||...|+.+.+.+++-.
T Consensus 107 ~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 107 ILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAA 141 (147)
T ss_pred HHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCE
Confidence 4333 323467999999999999999998753
No 132
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.84 E-value=0.0017 Score=64.11 Aligned_cols=86 Identities=21% Similarity=0.355 Sum_probs=67.1
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce----EEe-cC----Ch--hhHHHHHHHHHHcCCeEEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET----VIA-EA----KP--EQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~----~~~-~~----~p--~~K~~~v~~l~~~g~~v~~ 792 (922)
.++.|++.+.+++|++.|++++++|+..........+.+|+.. +++ .- .| +-=..+++.+.-..+.+++
T Consensus 76 ~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~ 155 (176)
T PF13419_consen 76 LQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILF 155 (176)
T ss_dssp EEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEE
T ss_pred cchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEE
Confidence 4688999999999999999999999999999999999999862 322 11 12 1113344445445678999
Q ss_pred EcCCcccHHHHHhCCce
Q 039776 793 VGDGINDSPALVAADVG 809 (922)
Q Consensus 793 vGDg~nD~~al~~A~vg 809 (922)
|||+..|+.+.+.|++.
T Consensus 156 vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 156 VGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EESSHHHHHHHHHTTSE
T ss_pred EeCCHHHHHHHHHcCCe
Confidence 99999999999999864
No 133
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.84 E-value=0.002 Score=64.60 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=59.9
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC-------ChhhHHHHHH----HHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA-------KPEQKAEKVE----ELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~v~----~l~~~g~~v~~v 793 (922)
++.|++.++++.|+++|+++.++|+... +....+.+|+...|... .+..+.++.+ .+.-..+.++||
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~v 164 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGI 164 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 6789999999999999999999997543 45678888986433221 1222333333 332234579999
Q ss_pred cCCcccHHHHHhCCce
Q 039776 794 GDGINDSPALVAADVG 809 (922)
Q Consensus 794 GDg~nD~~al~~A~vg 809 (922)
||..+|+.+.+.|++-
T Consensus 165 gD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 165 EDAQAGIEAIKAAGMF 180 (185)
T ss_pred ecCHHHHHHHHHcCCE
Confidence 9999999999999964
No 134
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.82 E-value=0.0067 Score=47.97 Aligned_cols=64 Identities=25% Similarity=0.501 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCcc
Q 039776 72 CRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEA 135 (922)
Q Consensus 72 ~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~ 135 (922)
..+.+.|++|..|+..++..+...+++....+++..+...+.+++.......+...+...||.+
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 4688999999999999999999999999999999999999999876556677767777777753
No 135
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.81 E-value=0.0063 Score=59.67 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=70.6
Q ss_pred ceEEEEEECCEEEEEEE----cCCC-----cchhHHHHHHHHHHCCCEEEEEcCCCHH------------HHHHHHHHhC
Q 039776 705 QTEILVSVDGELTGVLS----ISDP-----LKPGAHGVISILKSMQIRSILVTGDNWG------------TAKSIASEVG 763 (922)
Q Consensus 705 ~~~l~v~~~~~~~G~~~----~~d~-----~r~~~~~~i~~l~~~gi~~~~~tgd~~~------------~a~~ia~~~g 763 (922)
.+.+.+..|++++-... ..++ +.|++.++++.|+++|+++.++|..... ....+.+.+|
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~g 92 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLK 92 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcC
Confidence 35677788888875321 1222 4599999999999999999999976542 4567788999
Q ss_pred CceEE---ecC--ChhhHHHHHH----HHH--HcCCeEEEEcCCc--------ccHHHHHhCCceE
Q 039776 764 IETVI---AEA--KPEQKAEKVE----ELQ--ASGYTVAMVGDGI--------NDSPALVAADVGM 810 (922)
Q Consensus 764 i~~~~---~~~--~p~~K~~~v~----~l~--~~g~~v~~vGDg~--------nD~~al~~A~vgi 810 (922)
+.... +.- .+..+.+.+. .+. -..+.+.||||.. +|..+.++|++-.
T Consensus 93 l~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 93 VPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 86311 111 1112223333 332 2235799999996 6999999988754
No 136
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.0022 Score=61.63 Aligned_cols=56 Identities=30% Similarity=0.504 Sum_probs=50.5
Q ss_pred CCchhHHHHHHHHhhcCCCeeEEEEEecCCeEEEEEcCCCCCHHHHHHHHHccCccccc
Q 039776 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59 (922)
Q Consensus 1 m~C~~C~~~i~~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~gy~~~~ 59 (922)
|+|.+|++.+++.|+.++||.++.+++..+.+.|. +...+.++.+.++..|-++.+
T Consensus 15 M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~---ts~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 15 MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVE---TSVPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEE---ccCChHHHHHHHHhhChheEE
Confidence 89999999999999999999999999999999996 356789999999999977643
No 137
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.76 E-value=0.0045 Score=60.33 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=62.0
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCC---------------HHHHHHHHHHhCCc--eE-Ee-----cCCh--hhHHHH
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDN---------------WGTAKSIASEVGIE--TV-IA-----EAKP--EQKAEK 779 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~---------------~~~a~~ia~~~gi~--~~-~~-----~~~p--~~K~~~ 779 (922)
++.|++.+++++|+++|+++.++|... ......+.+++|+. .+ ++ .-.. ..|..+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~ 108 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKL 108 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 467899999999999999999999852 44667778888886 23 22 1111 123444
Q ss_pred HHHHHHc----CCeEEEEcCCcccHHHHHhCCceEE
Q 039776 780 VEELQAS----GYTVAMVGDGINDSPALVAADVGMA 811 (922)
Q Consensus 780 v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia 811 (922)
+..+.++ .+.+.||||+.+|..+.+.+++...
T Consensus 109 ~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i 144 (161)
T TIGR01261 109 LEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGI 144 (161)
T ss_pred HHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEE
Confidence 4443332 3569999999999999999997644
No 138
>PLN02811 hydrolase
Probab=96.76 E-value=0.0044 Score=64.20 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=57.4
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHhCCc----eEEecC---ChhhH------HHHHHHHH---Hc
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAK-SIASEVGIE----TVIAEA---KPEQK------AEKVEELQ---AS 786 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~-~ia~~~gi~----~~~~~~---~p~~K------~~~v~~l~---~~ 786 (922)
-++.|++.++++.|++.|+++.++||....... ...+..++. .+++.- ....| ...++.+. -.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 357899999999999999999999998765333 233333442 222221 11112 22333332 22
Q ss_pred CCeEEEEcCCcccHHHHHhCCce
Q 039776 787 GYTVAMVGDGINDSPALVAADVG 809 (922)
Q Consensus 787 g~~v~~vGDg~nD~~al~~A~vg 809 (922)
.+.++||||...|+.+.+.|++.
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~ 179 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMS 179 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCe
Confidence 46799999999999999999954
No 139
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.0032 Score=59.90 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=72.2
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC----CceE------------------E--ecCChhhHHHHH
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVG----IETV------------------I--AEAKPEQKAEKV 780 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~g----i~~~------------------~--~~~~p~~K~~~v 780 (922)
.++|+.++.++.+++.+++++++|+....-...+-.+.+ |..+ + ...-..+|...|
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI 152 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVI 152 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhH
Confidence 478999999999999999999999988888888887776 3210 0 012235799999
Q ss_pred HHHHHcCCeEEEEcCCcccHHHHHhCCceEEe
Q 039776 781 EELQASGYTVAMVGDGINDSPALVAADVGMAI 812 (922)
Q Consensus 781 ~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~ 812 (922)
+.+.+..+.+.|+|||+.|++|.+.+|+-.|=
T Consensus 153 ~~l~e~~e~~fy~GDsvsDlsaaklsDllFAK 184 (220)
T COG4359 153 HELSEPNESIFYCGDSVSDLSAAKLSDLLFAK 184 (220)
T ss_pred HHhhcCCceEEEecCCcccccHhhhhhhHhhH
Confidence 99999999999999999999999888876653
No 140
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.68 E-value=0.0054 Score=61.26 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=61.3
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce----EEe-cCChhhH------HHHHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET----VIA-EAKPEQK------AEKVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~----~~~-~~~p~~K------~~~v~~l~~~g~~v~~v 793 (922)
++.|++.+.++.|++.|+++.++|+..... ..+..++|+.. +++ .-....| ..+.+.+......++||
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 578999999999999999999999988777 66666688853 222 1111122 23334443345789999
Q ss_pred cCCcccHHHHHhCCce
Q 039776 794 GDGINDSPALVAADVG 809 (922)
Q Consensus 794 GDg~nD~~al~~A~vg 809 (922)
||...|+.+.+.+++-
T Consensus 164 gD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 164 DDSPAGIEAAKAAGMH 179 (183)
T ss_pred cCCHHHHHHHHHcCCE
Confidence 9999999999998863
No 141
>PLN02580 trehalose-phosphatase
Probab=96.58 E-value=0.019 Score=63.29 Aligned_cols=59 Identities=8% Similarity=0.235 Sum_probs=42.3
Q ss_pred HHhccCceEEEEEECCEEEEEEEcCCC--cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Q 039776 699 ETEGMAQTEILVSVDGELTGVLSISDP--LKPGAHGVISILKSMQIRSILVTGDNWGTAKSI 758 (922)
Q Consensus 699 ~~~~~~~~~l~v~~~~~~~G~~~~~d~--~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~i 758 (922)
.+.+.....+++.+||++.-+..--|. +.+++++++++|.+. ..+.|+||+......+.
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~ 173 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYEL 173 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHH
Confidence 445555677888999999875522121 457899999999988 47999999976554433
No 142
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0058 Score=50.69 Aligned_cols=51 Identities=22% Similarity=0.535 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHhhcCCCeeEEEEEecCCeEEEEEcCCCCCHHHHHHHHHccC
Q 039776 1 MTCSACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVG 54 (922)
Q Consensus 1 m~C~~C~~~i~~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~g 54 (922)
|+|.+|...+++.++.++||+.+.++...+++++.-. .++..+.+.+.+.|
T Consensus 13 ~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 13 MHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred cccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999853 67888999888766
No 143
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.54 E-value=0.0053 Score=62.66 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=59.5
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEE----e-cC----Chhh--HHHHHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVI----A-EA----KPEQ--KAEKVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~----~-~~----~p~~--K~~~v~~l~~~g~~v~~v 793 (922)
.+.|++.++++.|++.|+++.++|+-... .....+.+|+...+ . .- .|+. =..+++.+.-....++||
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 57899999999999999999999986654 46777888885332 2 11 1211 122333333335679999
Q ss_pred cCCc-ccHHHHHhCCce
Q 039776 794 GDGI-NDSPALVAADVG 809 (922)
Q Consensus 794 GDg~-nD~~al~~A~vg 809 (922)
||+. +|+.+.++|++-
T Consensus 184 gD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 184 GDSLRNDYQGARAAGWR 200 (203)
T ss_pred CCCchHHHHHHHHcCCe
Confidence 9997 899999988764
No 144
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.0071 Score=58.29 Aligned_cols=61 Identities=21% Similarity=0.482 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCcc
Q 039776 71 VCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEA 135 (922)
Q Consensus 71 ~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~ 135 (922)
+.+|.|+ |+|.+|+..++..|+..+||+++.+++..+.+.|.. ...+.++.+.++.+|-.+
T Consensus 8 ~~efaV~-M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~t---s~p~s~i~~~le~tGr~A 68 (247)
T KOG4656|consen 8 EAEFAVQ-MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVET---SVPPSEIQNTLENTGRDA 68 (247)
T ss_pred eEEEEEe-chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEc---cCChHHHHHHHHhhChhe
Confidence 3567775 999999999999999999999999999999999884 346889999999988654
No 145
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.49 E-value=0.0086 Score=65.75 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=79.6
Q ss_pred EEEEEECCEEEEEEEcCC--------CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH----hCCceEEec--CC
Q 039776 707 EILVSVDGELTGVLSISD--------PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASE----VGIETVIAE--AK 772 (922)
Q Consensus 707 ~l~v~~~~~~~G~~~~~d--------~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~----~gi~~~~~~--~~ 772 (922)
++.+--|.++-|-+.-+| ++.+++.++++.|+++|+++.++|..+...+..+.++ +|+...|.. ..
T Consensus 5 ~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~ 84 (320)
T TIGR01686 5 VLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN 84 (320)
T ss_pred EEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe
Confidence 444445555544444444 4579999999999999999999999999999999999 888754443 33
Q ss_pred hhhHHHHHHHHHH----cCCeEEEEcCCcccHHHHHhCCceEEec
Q 039776 773 PEQKAEKVEELQA----SGYTVAMVGDGINDSPALVAADVGMAIG 813 (922)
Q Consensus 773 p~~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia~~ 813 (922)
++.|...++.+.+ ....++||||...|..+.+.+...+.+-
T Consensus 85 ~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~~~~~ 129 (320)
T TIGR01686 85 WGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPVKTLL 129 (320)
T ss_pred cCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCCCccC
Confidence 4556665555433 3467999999999999999988776443
No 146
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.45 E-value=0.01 Score=55.50 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=58.2
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCC-CHHHHHHHHHHhC-------CceEEec-----CChhhH--HHHHHHHH--HcC
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGD-NWGTAKSIASEVG-------IETVIAE-----AKPEQK--AEKVEELQ--ASG 787 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd-~~~~a~~ia~~~g-------i~~~~~~-----~~p~~K--~~~v~~l~--~~g 787 (922)
++.+++.++++.|+++|+++.++|+. ....+..+.+..+ +..+|.. -.|+.+ ...++.+. -..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCCCCc
Confidence 58999999999999999999999999 7777778777777 4433322 223222 22333343 344
Q ss_pred CeEEEEcCCcccHHHHHh
Q 039776 788 YTVAMVGDGINDSPALVA 805 (922)
Q Consensus 788 ~~v~~vGDg~nD~~al~~ 805 (922)
+.++||||...|...++.
T Consensus 109 ~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 109 KSILFVDDRPDNNEEVDY 126 (128)
T ss_pred ceEEEECCCHhHHHHHHh
Confidence 789999999999777653
No 147
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.45 E-value=0.011 Score=62.21 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHc----CCeEEEEcCCcccHHHHHhC--------CceEEecCCcHHHHHhcCEEEeCCChhhHHHHH
Q 039776 773 PEQKAEKVEELQAS----GYTVAMVGDGINDSPALVAA--------DVGMAIGAGTDIAIEAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 773 p~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A--------~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i 839 (922)
+-+|...++.+.++ ...++|+||+.||.+|++.+ ..+|.++.+ ..+..|++++ ++...+...+
T Consensus 165 ~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g--~~~~~A~~~~--~~~~~v~~~L 239 (244)
T TIGR00685 165 FVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG--SKKTVAKFHL--TGPQQVLEFL 239 (244)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC--CcCCCceEeC--CCHHHHHHHH
Confidence 34566666665543 34799999999999999998 478888533 2355688887 4666666554
No 148
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.43 E-value=0.0081 Score=58.19 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=58.2
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce----EEec--CChhhHHHHHHH----HHHcCCeEEEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET----VIAE--AKPEQKAEKVEE----LQASGYTVAMV 793 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~----~~~~--~~p~~K~~~v~~----l~~~g~~v~~v 793 (922)
....+++.++++.|++.|+++.++|+.....+....+.. +.. +++. ..++.+.+.... +.-.. .++||
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~i 140 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLHV 140 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEEE
Confidence 344589999999999999999999999988888887775 432 2221 111223333333 33234 79999
Q ss_pred cCCcccHHHHHhCC
Q 039776 794 GDGINDSPALVAAD 807 (922)
Q Consensus 794 GDg~nD~~al~~A~ 807 (922)
||..+|..+.+.|+
T Consensus 141 GDs~~Di~aa~~aG 154 (154)
T TIGR01549 141 GDNLNDIEGARNAG 154 (154)
T ss_pred eCCHHHHHHHHHcc
Confidence 99999999988774
No 149
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.33 E-value=0.027 Score=59.18 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=67.4
Q ss_pred eEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHH--HHHHHhCCce-EEecC-Chhh-HHHHH
Q 039776 706 TEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAK--SIASEVGIET-VIAEA-KPEQ-KAEKV 780 (922)
Q Consensus 706 ~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~--~ia~~~gi~~-~~~~~-~p~~-K~~~v 780 (922)
+.+.+..|+++ .-.+.+.|++.+++++|+++|+++.++|+....... ...+++|+.. .+..+ ++.+ ....+
T Consensus 9 ~~~~~D~dG~l----~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~l 84 (242)
T TIGR01459 9 DVFLLDLWGVI----IDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAVQMI 84 (242)
T ss_pred CEEEEeccccc----ccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHHHHH
Confidence 34555555544 346778999999999999999999999987665544 5678899976 44442 3332 12333
Q ss_pred HHH-HH---cCCeEEEEcCCcccHHHHHhCC
Q 039776 781 EEL-QA---SGYTVAMVGDGINDSPALVAAD 807 (922)
Q Consensus 781 ~~l-~~---~g~~v~~vGDg~nD~~al~~A~ 807 (922)
... ++ .+..+.++||+.+|...+...+
T Consensus 85 ~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~ 115 (242)
T TIGR01459 85 LESKKRFDIRNGIIYLLGHLENDIINLMQCY 115 (242)
T ss_pred HhhhhhccCCCceEEEeCCcccchhhhcCCC
Confidence 332 22 2467999999999998886443
No 150
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.29 E-value=0.011 Score=60.79 Aligned_cols=78 Identities=24% Similarity=0.374 Sum_probs=63.0
Q ss_pred CcchhHHHHHHHH--HHCCCEEEEEcCCCHHHHHHHHHHhCCceE----E---------------------ecCCh--hh
Q 039776 725 PLKPGAHGVISIL--KSMQIRSILVTGDNWGTAKSIASEVGIETV----I---------------------AEAKP--EQ 775 (922)
Q Consensus 725 ~~r~~~~~~i~~l--~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~----~---------------------~~~~p--~~ 775 (922)
|+.|+.+++++.+ ++.|+.+.++|.-|..-...+.+.-|+... + |...| --
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmC 150 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMC 150 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccc
Confidence 6789999999999 458999999999999999999999998522 1 11223 35
Q ss_pred HHHHHHHHHHc----C---CeEEEEcCCcccHHH
Q 039776 776 KAEKVEELQAS----G---YTVAMVGDGINDSPA 802 (922)
Q Consensus 776 K~~~v~~l~~~----g---~~v~~vGDg~nD~~a 802 (922)
|..+++.+++. | .+|.+||||.||.-.
T Consensus 151 K~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp 184 (234)
T PF06888_consen 151 KGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCP 184 (234)
T ss_pred hHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCc
Confidence 99999988875 4 689999999999643
No 151
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=96.28 E-value=0.017 Score=59.36 Aligned_cols=91 Identities=11% Similarity=0.125 Sum_probs=65.4
Q ss_pred cCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh---CC----ceEEec-CChhhH----HHHHHHHHHcCCe
Q 039776 722 ISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEV---GI----ETVIAE-AKPEQK----AEKVEELQASGYT 789 (922)
Q Consensus 722 ~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~---gi----~~~~~~-~~p~~K----~~~v~~l~~~g~~ 789 (922)
++-++.|++.+++++|+++|+++.++|..+......+.+.. ++ +.++.. ..++.+ ..+++.+.-..+.
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 34579999999999999999999999998887777766665 33 223321 112222 3344444444577
Q ss_pred EEEEcCCcccHHHHHhCCceEEe
Q 039776 790 VAMVGDGINDSPALVAADVGMAI 812 (922)
Q Consensus 790 v~~vGDg~nD~~al~~A~vgia~ 812 (922)
++||||...|+.+.++|++-..+
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~ti~ 194 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHTGQ 194 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEEEE
Confidence 99999999999999999976433
No 152
>PLN02957 copper, zinc superoxide dismutase
Probab=96.24 E-value=0.016 Score=60.32 Aligned_cols=67 Identities=21% Similarity=0.410 Sum_probs=57.7
Q ss_pred eEEEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCccccccc
Q 039776 70 QVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIPIST 140 (922)
Q Consensus 70 ~~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~~~ 140 (922)
+.+.+.+ +|+|.+|+.++++.+++++|+.++.+++..+++.+.++ ...+.+.+.+++.||.+.+...
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~ 72 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQ 72 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecC
Confidence 4567888 79999999999999999999999999999999999883 3578888999999998765443
No 153
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.18 E-value=0.0051 Score=59.16 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=64.5
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEE-ec-----CChhhHHHHHHHHHH---cCCeEEEEcC
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVI-AE-----AKPEQKAEKVEELQA---SGYTVAMVGD 795 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~-~~-----~~p~~K~~~v~~l~~---~g~~v~~vGD 795 (922)
++||++.+.++.|+ .++++.++|+-....+..+.+.+|+...+ .. -....|..+.+.++. ..+.+.||||
T Consensus 45 ~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~D 123 (148)
T smart00577 45 KKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDD 123 (148)
T ss_pred EECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEEC
Confidence 57999999999999 57999999999999999999999885322 21 122234335444444 4568999999
Q ss_pred CcccHHHHHhCCceEE
Q 039776 796 GINDSPALVAADVGMA 811 (922)
Q Consensus 796 g~nD~~al~~A~vgia 811 (922)
..+|..+-+.+++-|.
T Consensus 124 s~~~~~aa~~ngI~i~ 139 (148)
T smart00577 124 SPDSWPFHPENLIPIK 139 (148)
T ss_pred CHHHhhcCccCEEEec
Confidence 9999998777765553
No 154
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.18 E-value=0.018 Score=63.15 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCC---------------CHHHHHHHHHHhCCc--eEE-ec-----C--ChhhHHH
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGD---------------NWGTAKSIASEVGIE--TVI-AE-----A--KPEQKAE 778 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd---------------~~~~a~~ia~~~gi~--~~~-~~-----~--~p~~K~~ 778 (922)
-++.|++.+++++|++.|+++.++|+. .......+.+..|+. .++ +. - ....|..
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~p~ 108 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTG 108 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCCHH
Confidence 367899999999999999999999984 234566677888875 222 21 1 1123444
Q ss_pred HHHHHHHc----CCeEEEEcCCcccHHHHHhCCceEEe
Q 039776 779 KVEELQAS----GYTVAMVGDGINDSPALVAADVGMAI 812 (922)
Q Consensus 779 ~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~ 812 (922)
.+..+.++ .+.+.||||+.+|..+.+.|++-..+
T Consensus 109 ~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~ 146 (354)
T PRK05446 109 LVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIR 146 (354)
T ss_pred HHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEE
Confidence 55544443 37899999999999999999976443
No 155
>PRK10444 UMP phosphatase; Provisional
Probab=96.14 E-value=0.034 Score=58.45 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=38.1
Q ss_pred EEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH---hCC
Q 039776 719 VLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASE---VGI 764 (922)
Q Consensus 719 ~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~---~gi 764 (922)
++.-.+.+-|++.+++++|+++|++++++||....+...++++ +|+
T Consensus 11 tL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 11 VLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred ceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 3445678889999999999999999999999998877777666 466
No 156
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.06 E-value=0.012 Score=60.99 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCc----eEEecCChh--hHHHHHHHHHH----cCCeEEEEcCCcccHHHHHhCCceEEe
Q 039776 754 TAKSIASEVGIE----TVIAEAKPE--QKAEKVEELQA----SGYTVAMVGDGINDSPALVAADVGMAI 812 (922)
Q Consensus 754 ~a~~ia~~~gi~----~~~~~~~p~--~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia~ 812 (922)
.......+.|+. ..+.++.|. .|..-++.+.+ ..+.|+++||+.||.+|++.|+.|||+
T Consensus 152 ~~~~~l~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 152 RFTALLADLGLAIVQGNRFSHVLGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred HHHHHHHHcCCeEEecCCeeEEecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 333444455665 233344443 47776666654 346799999999999999999999986
No 157
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.06 E-value=0.048 Score=52.92 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHH---HHHHH-----hCCc--eEEe--------------cCChhh-HH
Q 039776 723 SDPLKPGAHGVISILKSMQIRSILVTGDNWGTAK---SIASE-----VGIE--TVIA--------------EAKPEQ-KA 777 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~---~ia~~-----~gi~--~~~~--------------~~~p~~-K~ 777 (922)
+|.+.|++.++++++++.|++++++||+....+. ....+ .++. .++. .-.|+. |.
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~ 104 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKI 104 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHH
Confidence 3678899999999999999999999999988874 55555 2242 2221 112333 77
Q ss_pred HHHHHHHH-----cCCeEEEEcCCcccHHHHHhCCce
Q 039776 778 EKVEELQA-----SGYTVAMVGDGINDSPALVAADVG 809 (922)
Q Consensus 778 ~~v~~l~~-----~g~~v~~vGDg~nD~~al~~A~vg 809 (922)
+.++.+.+ ....++.+||+.+|+.+-+++++.
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 78887776 234567799999999998887653
No 158
>PLN02957 copper, zinc superoxide dismutase
Probab=95.98 E-value=0.02 Score=59.64 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=56.2
Q ss_pred cceeeeecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhCCCCcccccC
Q 039776 146 SKIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTASGHFKARIF 217 (922)
Q Consensus 146 ~~~~~~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~a~~~ 217 (922)
++..+.+ +|+|.+|+..+++.+.+.+||.++.+++.++++.+.|+ ...+++.+.+++.| |.+.+.
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~G---y~a~~~ 70 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTG---RKARLI 70 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcC---CcEEEe
Confidence 4567888 79999999999999999999999999999999999983 46788889999988 766544
No 159
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=95.97 E-value=0.031 Score=58.86 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHc----CCeEEEEcCCcccHHHHHhCCceEEecCCcHH
Q 039776 774 EQKAEKVEELQAS----GYTVAMVGDGINDSPALVAADVGMAIGAGTDI 818 (922)
Q Consensus 774 ~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~ 818 (922)
..|...++.|+++ .+.|+++||+-||.+||..++-||.++++.+.
T Consensus 164 a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~vvV~Na~~e 212 (247)
T PF05116_consen 164 ASKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGVVVGNAQPE 212 (247)
T ss_dssp -SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEEE-TTS-HH
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEEEEcCCCHH
Confidence 4577777777664 24688899999999999999999999998776
No 160
>PLN03017 trehalose-phosphatase
Probab=95.85 E-value=0.11 Score=57.01 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=45.3
Q ss_pred ccCceEEEEEECCEEEEEEEcCC--CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Q 039776 702 GMAQTEILVSVDGELTGVLSISD--PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIA 759 (922)
Q Consensus 702 ~~~~~~l~v~~~~~~~G~~~~~d--~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia 759 (922)
......+++.+||+++-+..-.| .+.++..++|++|. .|+.++++||+.......+.
T Consensus 108 ~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred cCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 33455677789999997766444 48899999999999 78999999999988777664
No 161
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=95.85 E-value=0.04 Score=53.44 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=80.6
Q ss_pred HhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCE--EEEEcCC-------CHHHHHHHHHHhCCceE-Ee
Q 039776 700 TEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIR--SILVTGD-------NWGTAKSIASEVGIETV-IA 769 (922)
Q Consensus 700 ~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~--~~~~tgd-------~~~~a~~ia~~~gi~~~-~~ 769 (922)
+...|.+.+.+..|.++.. --++++.|+..+.+++|++.+.. ++++|.. +...|..+.+.+|+..+ +.
T Consensus 36 Lk~~Gik~li~DkDNTL~~--~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTP--PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred hhhcCceEEEEcCCCCCCC--CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeC
Confidence 3445666666666665432 34678899999999999998774 9999986 47889999999999975 44
Q ss_pred cCChhhHHHHHHHHHHc-----CCeEEEEcCCc-ccHHHHHhCC
Q 039776 770 EAKPEQKAEKVEELQAS-----GYTVAMVGDGI-NDSPALVAAD 807 (922)
Q Consensus 770 ~~~p~~K~~~v~~l~~~-----g~~v~~vGDg~-nD~~al~~A~ 807 (922)
...|....++.+.++.+ .+.++||||-. -|+-+-...+
T Consensus 114 ~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G 157 (168)
T PF09419_consen 114 AKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMG 157 (168)
T ss_pred CCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccC
Confidence 56787777888888765 66899999994 5877765554
No 162
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.85 E-value=0.079 Score=56.17 Aligned_cols=53 Identities=23% Similarity=0.397 Sum_probs=38.5
Q ss_pred EEEEECCEEEEEEEcCCC----cchhHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHhCC
Q 039776 708 ILVSVDGELTGVLSISDP----LKPGAHGVISILKSMQIRSILVTGDNWGT---AKSIASEVGI 764 (922)
Q Consensus 708 l~v~~~~~~~G~~~~~d~----~r~~~~~~i~~l~~~gi~~~~~tgd~~~~---a~~ia~~~gi 764 (922)
+.+..||++. -.+. +-|++.+++++|+++|++++++||....+ .....+++|+
T Consensus 4 i~~D~DGtl~----~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~ 63 (257)
T TIGR01458 4 VLLDISGVLY----ISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGF 63 (257)
T ss_pred EEEeCCCeEE----eCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 4445565554 3455 78899999999999999999999876665 4444455676
No 163
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.84 E-value=0.039 Score=58.09 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=60.4
Q ss_pred CCCcchhHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHhCCc-----eEEecCChhhHHHHHHHHHHcCCeEEEEc
Q 039776 723 SDPLKPGAHGVISILKSMQIRSILVTGDNWG---TAKSIASEVGIE-----TVIAEAKPEQKAEKVEELQASGYTVAMVG 794 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~---~a~~ia~~~gi~-----~~~~~~~p~~K~~~v~~l~~~g~~v~~vG 794 (922)
..++-|++.+.++.|++.|+++.++|+.... .+....+..|++ .++.+-....|..-.+.+.+.-..+++||
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~Ivl~vG 195 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEIVLLFG 195 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCEEEEEC
Confidence 3457799999999999999999999997743 344666778985 44544333456666666666556799999
Q ss_pred CCcccHHHH
Q 039776 795 DGINDSPAL 803 (922)
Q Consensus 795 Dg~nD~~al 803 (922)
|..+|....
T Consensus 196 D~~~Df~~~ 204 (266)
T TIGR01533 196 DNLLDFDDF 204 (266)
T ss_pred CCHHHhhhh
Confidence 999998653
No 164
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=95.79 E-value=0.085 Score=65.09 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=54.3
Q ss_pred hHHHHHHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHH
Q 039776 693 TEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISIL-KSMQIRSILVTGDNWGTAKSIASE 761 (922)
Q Consensus 693 ~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l-~~~gi~~~~~tgd~~~~a~~ia~~ 761 (922)
.+.....+.....+.+++.+||+++-.-...-.+.++..+++++| ++.|..++++||+...+.......
T Consensus 584 ~~~i~~~y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 584 MEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred HHHHHHHHHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 455666777777788889999999854433346678999999998 778999999999999888776644
No 165
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.75 E-value=0.037 Score=70.35 Aligned_cols=108 Identities=12% Similarity=0.181 Sum_probs=76.1
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc-e----EEe-c----CCh--hhHHHHHHHHHHcCCeEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE-T----VIA-E----AKP--EQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~-~----~~~-~----~~p--~~K~~~v~~l~~~g~~v~~ 792 (922)
.+.|++.+.+++|+++|+++.++|+.....+....+++|+. . +++ . ..| +-=...++.+.-..+.++|
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 46799999999999999999999999999999888999984 2 211 1 112 2223344444444578999
Q ss_pred EcCCcccHHHHHhCCc---eEEecC-CcHHHHHhcCEEEeCCChhh
Q 039776 793 VGDGINDSPALVAADV---GMAIGA-GTDIAIEAADIVLMKSNLED 834 (922)
Q Consensus 793 vGDg~nD~~al~~A~v---gia~~~-~~~~~~~~ad~vl~~~~~~~ 834 (922)
|||..+|+.+.+.|++ ++..+. ..+.....+|.++ +++.+
T Consensus 241 IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi--~~l~e 284 (1057)
T PLN02919 241 IEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIR--KDIGN 284 (1057)
T ss_pred EcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEE--CChHH
Confidence 9999999999999995 333332 2233345677777 44554
No 166
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.66 E-value=0.058 Score=53.20 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=43.1
Q ss_pred eEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Q 039776 706 TEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGI 764 (922)
Q Consensus 706 ~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi 764 (922)
..++...|+++++ -+.+- +.+.+.+.+|+++|++|+.+|......-..+-+.+|+
T Consensus 8 ~lIFtDlD~TLl~-~~ye~---~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v 62 (274)
T COG3769 8 LLIFTDLDGTLLP-HSYEW---QPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGV 62 (274)
T ss_pred eEEEEcccCcccC-CCCCC---CccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Confidence 3455667788776 22222 2367899999999999999999999998899999987
No 167
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.032 Score=46.23 Aligned_cols=53 Identities=23% Similarity=0.557 Sum_probs=47.7
Q ss_pred cCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcC
Q 039776 77 KKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTG 132 (922)
Q Consensus 77 ~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G 132 (922)
-.|+|.+|..++++.++.++||.++..+...+++++..+ .++..+.+.+.+.|
T Consensus 11 v~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 11 VNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred ECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 369999999999999999999999999999999999865 46888888888765
No 168
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.61 E-value=0.026 Score=57.89 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=57.5
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHhCC----ceEEecC-----Chhh--HHHHHHHHHHcCCeE
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGT--AKSIASEVGI----ETVIAEA-----KPEQ--KAEKVEELQASGYTV 790 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~--a~~ia~~~gi----~~~~~~~-----~p~~--K~~~v~~l~~~g~~v 790 (922)
-++.|++.++++.|+++|+++.++|+..... ........++ +.+++.. .|+. =..+++.+.-..+.+
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~ 172 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEEC 172 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 3578999999999999999999999865432 3322333444 3333221 2221 122333333345679
Q ss_pred EEEcCCcccHHHHHhCCceE
Q 039776 791 AMVGDGINDSPALVAADVGM 810 (922)
Q Consensus 791 ~~vGDg~nD~~al~~A~vgi 810 (922)
+||||...|+.+.++|++-.
T Consensus 173 l~i~D~~~di~aA~~aG~~~ 192 (211)
T TIGR02247 173 VFLDDLGSNLKPAAALGITT 192 (211)
T ss_pred EEEcCCHHHHHHHHHcCCEE
Confidence 99999999999999999753
No 169
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.44 E-value=0.11 Score=54.82 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=42.5
Q ss_pred EEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHhCCc
Q 039776 707 EILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTG---DNWGTAKSIASEVGIE 765 (922)
Q Consensus 707 ~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tg---d~~~~a~~ia~~~gi~ 765 (922)
.+.+..||++. -.+.+-|++.++|++|+++|++++++|| +.........+++|++
T Consensus 3 ~~~~D~DGtl~----~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 3 GYLIDLDGTMY----KGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred EEEEeCCCceE----cCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 44555666654 3566778999999999999999999996 6677777777778873
No 170
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.40 E-value=0.042 Score=55.83 Aligned_cols=86 Identities=13% Similarity=0.153 Sum_probs=58.4
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-hCC----ceEEec-CCh--hhHHH----HHHHHHHcCCeEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASE-VGI----ETVIAE-AKP--EQKAE----KVEELQASGYTVAM 792 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~-~gi----~~~~~~-~~p--~~K~~----~v~~l~~~g~~v~~ 792 (922)
++.|++.+++++|++.|+++.++|+-+.......... .++ +.+++. -.+ +.+.+ +++.+....+.++|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 4789999999999999999999999876655433222 243 233321 111 11233 33444334567999
Q ss_pred EcCCcccHHHHHhCCceE
Q 039776 793 VGDGINDSPALVAADVGM 810 (922)
Q Consensus 793 vGDg~nD~~al~~A~vgi 810 (922)
|||...|+.+.+.+++..
T Consensus 164 vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 164 FDDNADNIEAANALGITS 181 (199)
T ss_pred eCCCHHHHHHHHHcCCEE
Confidence 999999999999999753
No 171
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=95.24 E-value=0.049 Score=54.54 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=61.5
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce----EEec--C-------Chh--hHHHHHHHHHHcCCe
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET----VIAE--A-------KPE--QKAEKVEELQASGYT 789 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~----~~~~--~-------~p~--~K~~~v~~l~~~g~~ 789 (922)
++.+++.+++++|+ .+++++|+.+...+....+.+|+.. +++. . .|. -=..+++.+....+.
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 47799999999998 4789999999999999999999853 3321 1 221 113344444445677
Q ss_pred EEEEcCCcccHHHHHhCCceE
Q 039776 790 VAMVGDGINDSPALVAADVGM 810 (922)
Q Consensus 790 v~~vGDg~nD~~al~~A~vgi 810 (922)
++||||...|+.+.+.+++..
T Consensus 161 ~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 161 AIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred eEEEeCCHHHHHHHHHcCCEE
Confidence 999999999999999998753
No 172
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=95.04 E-value=0.13 Score=52.64 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=57.1
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHhCCce---EEecC-Chhh------HHHHHHHHHHcCC-e
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGT---AKSIASEVGIET---VIAEA-KPEQ------KAEKVEELQASGY-T 789 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~---a~~ia~~~gi~~---~~~~~-~p~~------K~~~v~~l~~~g~-~ 789 (922)
-+.-|++.++++.|++.|++++++||+.... +..-.++.|++. ++-+- .... |.+.-+.+.++|+ .
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrI 198 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRI 198 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceE
Confidence 3677999999999999999999999999765 445556778763 33332 1122 6666667777765 5
Q ss_pred EEEEcCCcccH
Q 039776 790 VAMVGDGINDS 800 (922)
Q Consensus 790 v~~vGDg~nD~ 800 (922)
++.+||..+|.
T Consensus 199 v~~iGDq~sDl 209 (229)
T TIGR01675 199 WGNIGDQWSDL 209 (229)
T ss_pred EEEECCChHHh
Confidence 77899999996
No 173
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=94.95 E-value=0.047 Score=56.50 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=62.4
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec--CC----hhhH--HHHH----HHHHHcCCeEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE--AK----PEQK--AEKV----EELQASGYTVA 791 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~--~~----p~~K--~~~v----~~l~~~g~~v~ 791 (922)
-++.|++.++++.| ++++.++|+.....+....+..|+...|.. ++ ...| .++. +.+.-..+.++
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 35678999999988 489999999998888888888998644421 11 1112 3333 33332346799
Q ss_pred EEcCCcccHHHHHhCCceEEe
Q 039776 792 MVGDGINDSPALVAADVGMAI 812 (922)
Q Consensus 792 ~vGDg~nD~~al~~A~vgia~ 812 (922)
||||..+|+.+.+.|++.+.+
T Consensus 164 ~igDs~~di~aA~~aG~~~i~ 184 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEVFY 184 (221)
T ss_pred EEeCcHhhHHHHHHCCCEEEE
Confidence 999999999999999987654
No 174
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=94.70 E-value=0.064 Score=53.81 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC-----C--hhhHHH----HHHHHHHcCCeEEEEc
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA-----K--PEQKAE----KVEELQASGYTVAMVG 794 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K~~----~v~~l~~~g~~v~~vG 794 (922)
+.|+ .++++.|++. +++.++||.....+....+.+|+..+|..+ . ++.+.+ ..+.+......+.|||
T Consensus 89 ~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ig 166 (188)
T PRK10725 89 PLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFE 166 (188)
T ss_pred CccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEe
Confidence 4454 6899999875 899999999999999999999986443221 1 111223 3333433345699999
Q ss_pred CCcccHHHHHhCCce
Q 039776 795 DGINDSPALVAADVG 809 (922)
Q Consensus 795 Dg~nD~~al~~A~vg 809 (922)
|..+|+.+.+.|++-
T Consensus 167 Ds~~di~aA~~aG~~ 181 (188)
T PRK10725 167 DADFGIQAARAAGMD 181 (188)
T ss_pred ccHhhHHHHHHCCCE
Confidence 999999999999964
No 175
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.65 E-value=0.11 Score=51.56 Aligned_cols=88 Identities=28% Similarity=0.371 Sum_probs=65.1
Q ss_pred CcchhHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHhCCceE--------------------------EecCChhh--
Q 039776 725 PLKPGAHGVISILKSMQI-RSILVTGDNWGTAKSIASEVGIETV--------------------------IAEAKPEQ-- 775 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi-~~~~~tgd~~~~a~~ia~~~gi~~~--------------------------~~~~~p~~-- 775 (922)
|+-|+..++|+.+++.|- .++++|.-|.--...+.+..|+... -|.+.|.+
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmC 163 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMC 163 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhh
Confidence 778999999999999996 8999999999999999999998421 12334443
Q ss_pred HHHHHHHHHHcC-------CeEEEEcCCcccH-HHHHhCCceEEe
Q 039776 776 KAEKVEELQASG-------YTVAMVGDGINDS-PALVAADVGMAI 812 (922)
Q Consensus 776 K~~~v~~l~~~g-------~~v~~vGDg~nD~-~al~~A~vgia~ 812 (922)
|..++..++.++ +++.++|||.||. |+++...--++|
T Consensus 164 Kg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~am 208 (256)
T KOG3120|consen 164 KGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAM 208 (256)
T ss_pred hhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceec
Confidence 777777766542 3799999999995 454444333444
No 176
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=94.36 E-value=0.086 Score=55.24 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=56.4
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEe-----cCC--hhhHHHHH----HHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIA-----EAK--PEQKAEKV----EELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~-----~~~--p~~K~~~v----~~l~~~g~~v~~v 793 (922)
++.|++.++++.|++. +++.++|+.+.. .+..|+..+|. .-. .+.+.++. +.+.-..+.++||
T Consensus 113 ~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 113 DVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV 186 (238)
T ss_pred CCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence 5778999999999975 899999986554 25677753322 111 11223333 3333335679999
Q ss_pred cCC-cccHHHHHhCCceEEec
Q 039776 794 GDG-INDSPALVAADVGMAIG 813 (922)
Q Consensus 794 GDg-~nD~~al~~A~vgia~~ 813 (922)
||. ..|+.+.+.|++-..+.
T Consensus 187 GD~~~~Di~~A~~aG~~~i~v 207 (238)
T PRK10748 187 GDDLTTDVAGAIRCGMQACWI 207 (238)
T ss_pred cCCcHHHHHHHHHCCCeEEEE
Confidence 999 59999999999776554
No 177
>PHA02597 30.2 hypothetical protein; Provisional
Probab=94.29 E-value=0.12 Score=52.35 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=55.7
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce--------EE-ecCChhhHHHHHHHHHH-cC-CeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET--------VI-AEAKPEQKAEKVEELQA-SG-YTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~--------~~-~~~~p~~K~~~v~~l~~-~g-~~v~~v 793 (922)
++.|++.+++++|++.+ +.+++|..+........+.+|+.. +. ++.. ..|.+++....+ .| +.++||
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~-~~kp~~~~~a~~~~~~~~~v~v 151 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHD-ESKEKLFIKAKEKYGDRVVCFV 151 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccC-cccHHHHHHHHHHhCCCcEEEe
Confidence 47899999999999875 567777755555444556666642 21 2222 225554444333 23 468899
Q ss_pred cCCcccHHHHHhC--Cce
Q 039776 794 GDGINDSPALVAA--DVG 809 (922)
Q Consensus 794 GDg~nD~~al~~A--~vg 809 (922)
||..+|+.+.++| ++-
T Consensus 152 gDs~~di~aA~~a~~Gi~ 169 (197)
T PHA02597 152 DDLAHNLDAAHEALSQLP 169 (197)
T ss_pred CCCHHHHHHHHHHHcCCc
Confidence 9999999999999 964
No 178
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=94.02 E-value=0.075 Score=47.24 Aligned_cols=86 Identities=21% Similarity=0.241 Sum_probs=52.7
Q ss_pred EEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH---HHhCCceEEecC-ChhhHHHHHHHHHH--cCCeEEE
Q 039776 719 VLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIA---SEVGIETVIAEA-KPEQKAEKVEELQA--SGYTVAM 792 (922)
Q Consensus 719 ~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia---~~~gi~~~~~~~-~p~~K~~~v~~l~~--~g~~v~~ 792 (922)
++...+.+-|++.++++.|+++|++++++|.....+...++ +.+|++.-..++ +|. ....+.+++ .+.+|..
T Consensus 8 vl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~--~~~~~~l~~~~~~~~v~v 85 (101)
T PF13344_consen 8 VLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG--MAAAEYLKEHKGGKKVYV 85 (101)
T ss_dssp TSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH--HHHHHHHHHHTTSSEEEE
T ss_pred EeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH--HHHHHHHHhcCCCCEEEE
Confidence 34457888999999999999999999999988755544333 667876211111 111 123333443 4788999
Q ss_pred EcCCcccHHHHHhCC
Q 039776 793 VGDGINDSPALVAAD 807 (922)
Q Consensus 793 vGDg~nD~~al~~A~ 807 (922)
+|.. .....++.++
T Consensus 86 lG~~-~l~~~l~~~G 99 (101)
T PF13344_consen 86 LGSD-GLREELREAG 99 (101)
T ss_dssp ES-H-HHHHHHHHTT
T ss_pred EcCH-HHHHHHHHcC
Confidence 9876 5555565554
No 179
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=93.72 E-value=0.25 Score=48.45 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=41.5
Q ss_pred EEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH---HHhCCc
Q 039776 716 LTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIA---SEVGIE 765 (922)
Q Consensus 716 ~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia---~~~gi~ 765 (922)
+-|.+.++|..-|++.|+++.||+++.++..+|....+.-+.+. +.+|++
T Consensus 14 lSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~ 66 (262)
T KOG3040|consen 14 LSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD 66 (262)
T ss_pred ccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC
Confidence 56889999999999999999999999999999987766655544 456763
No 180
>PLN02645 phosphoglycolate phosphatase
Probab=93.43 E-value=0.17 Score=55.23 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=67.1
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH---HHhCCceEEecC-Chhh-HHHH
Q 039776 705 QTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIA---SEVGIETVIAEA-KPEQ-KAEK 779 (922)
Q Consensus 705 ~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia---~~~gi~~~~~~~-~p~~-K~~~ 779 (922)
.+.+.+..||++. -.+.+-|++.++++.|+++|++++++|+....+...++ +++|+......+ ++.. ....
T Consensus 28 ~~~~~~D~DGtl~----~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~ 103 (311)
T PLN02645 28 VETFIFDCDGVIW----KGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAY 103 (311)
T ss_pred CCEEEEeCcCCeE----eCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHH
Confidence 4567777787765 35677899999999999999999999999977666666 567875222111 2211 1222
Q ss_pred HHHHHH-cCCeEEEEcCCcccHHHHHhCCceEEe
Q 039776 780 VEELQA-SGYTVAMVGDGINDSPALVAADVGMAI 812 (922)
Q Consensus 780 v~~l~~-~g~~v~~vGDg~nD~~al~~A~vgia~ 812 (922)
++.... .+++ +++++...|...++.+++-+.-
T Consensus 104 l~~~~~~~~~~-V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 104 LKSINFPKDKK-VYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred HHhhccCCCCE-EEEEcCHHHHHHHHHCCCEEec
Confidence 222211 1344 5555566889999988875443
No 181
>PLN02151 trehalose-phosphatase
Probab=92.84 E-value=0.99 Score=49.48 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=41.3
Q ss_pred CceEEEEEECCEEEEEEEcCCC--cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Q 039776 704 AQTEILVSVDGELTGVLSISDP--LKPGAHGVISILKSMQIRSILVTGDNWGTAKSIA 759 (922)
Q Consensus 704 ~~~~l~v~~~~~~~G~~~~~d~--~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia 759 (922)
....+++.+||+++-+.---|. +.++..++|+.|.+ +..+.++||+.......+.
T Consensus 97 ~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~ 153 (354)
T PLN02151 97 KQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFV 153 (354)
T ss_pred CceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHc
Confidence 3456777899999865543343 56889999999994 5789999999877665554
No 182
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=92.50 E-value=0.42 Score=49.34 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=69.9
Q ss_pred CCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec-----------CChhhHHHHHHHHHHcCCeEE
Q 039776 723 SDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE-----------AKPEQKAEKVEELQASGYTVA 791 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~-----------~~p~~K~~~v~~l~~~g~~v~ 791 (922)
..++.|++.+.+++|+++|+.+.+.|+-....+..+.+.+|+..+|.. ..|+-=..-.+.|.-....++
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 347889999999999999999999999999999999999999765543 223322334444444567899
Q ss_pred EEcCCcccHHHHHhCCce
Q 039776 792 MVGDGINDSPALVAADVG 809 (922)
Q Consensus 792 ~vGDg~nD~~al~~A~vg 809 (922)
.|.|..+.+.|.++|+.-
T Consensus 164 viEDs~~Gi~Aa~aAGm~ 181 (221)
T COG0637 164 VVEDSPAGIQAAKAAGMR 181 (221)
T ss_pred EEecchhHHHHHHHCCCE
Confidence 999999999999999954
No 183
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=91.68 E-value=1 Score=46.69 Aligned_cols=113 Identities=22% Similarity=0.237 Sum_probs=71.5
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec---------CChhhH--HHHHHHHHHcCCeEEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE---------AKPEQK--AEKVEELQASGYTVAM 792 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~---------~~p~~K--~~~v~~l~~~g~~v~~ 792 (922)
-++.+++.+++++|++. ++++++|.-.........+++|+..+|-. ..|..+ ....+.+....+.++|
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 36778999999999999 99999998888888999999998643321 223222 2233333333567999
Q ss_pred EcCC-cccHHHHHhCCce-EEecCCcH---HHHHhcCEEEeCCChhhHHHHH
Q 039776 793 VGDG-INDSPALVAADVG-MAIGAGTD---IAIEAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 793 vGDg-~nD~~al~~A~vg-ia~~~~~~---~~~~~ad~vl~~~~~~~l~~~i 839 (922)
|||. .||+...+.++.- |-+..+.. ......|..+ .++..+..++
T Consensus 177 VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i--~~l~~l~~~~ 226 (229)
T COG1011 177 VGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEI--SSLAELLDLL 226 (229)
T ss_pred ECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEE--cCHHHHHHHH
Confidence 9997 6675777777754 33332211 1113455555 4466665554
No 184
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=91.33 E-value=0.88 Score=47.95 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=36.7
Q ss_pred EEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Q 039776 718 GVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASE 761 (922)
Q Consensus 718 G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~ 761 (922)
|++.-.+.+-|++.++|++|+++|++++++|.....+...++++
T Consensus 17 Gvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~ 60 (269)
T COG0647 17 GVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAAR 60 (269)
T ss_pred CceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 56668899999999999999999999999998877666644443
No 185
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=90.96 E-value=1.4 Score=50.94 Aligned_cols=107 Identities=13% Similarity=0.193 Sum_probs=70.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-hCCceEEe-c------------------CChhhHHHHHHHHHH
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASE-VGIETVIA-E------------------AKPEQKAEKVEELQA 785 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~-~gi~~~~~-~------------------~~p~~K~~~v~~l~~ 785 (922)
+++++.+ .++++|-+ +++|+-...-++.+|++ +|++.+.+ + +.-++|..-++....
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g 186 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG 186 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC
Confidence 6666555 44567754 99999999999999987 89985422 1 123558777764332
Q ss_pred cCCeEEEEcCCcccHHHHHhCCceEEecCCc--HH--HHHhcCEEEeCCChhhHH
Q 039776 786 SGYTVAMVGDGINDSPALVAADVGMAIGAGT--DI--AIEAADIVLMKSNLEDEI 836 (922)
Q Consensus 786 ~g~~v~~vGDg~nD~~al~~A~vgia~~~~~--~~--~~~~ad~vl~~~~~~~l~ 836 (922)
......+.||..||.|+|+.||-+..++... .. -+.--.+|..|..+...+
T Consensus 187 ~~~~~~aYgDS~sD~plL~~a~e~y~V~~~~~~~~~~~~~~~~~~fhdgrl~~~p 241 (497)
T PLN02177 187 DALPDLGLGDRETDHDFMSICKEGYMVPRTKCEPLPRNKLLSPVIFHEGRLVQRP 241 (497)
T ss_pred CCCceEEEECCccHHHHHHhCCccEEeCCCCCCcCCcccCCCceeeeCCcccCCC
Confidence 1122378899999999999999999998521 01 111235566665544433
No 186
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=90.17 E-value=0.65 Score=49.05 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=50.3
Q ss_pred eEEEEEECCEEEEEEEcCCC--cc-hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEE
Q 039776 706 TEILVSVDGELTGVLSISDP--LK-PGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVI 768 (922)
Q Consensus 706 ~~l~v~~~~~~~G~~~~~d~--~r-~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~ 768 (922)
..+.+..|++++.- +.+ +| |++.+++++|+++|+++.++|+.....+....+++|++.+|
T Consensus 127 kvIvFDLDgTLi~~---~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 127 HVVVFDLDSTLITD---EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred eEEEEecCCCCcCC---CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 45677788887754 433 56 99999999999999999999999999999999999998543
No 187
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=89.65 E-value=0.92 Score=52.75 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=64.7
Q ss_pred eEEEEEECCEEEEE----EEcCCC-----cchhHHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHHHhCC
Q 039776 706 TEILVSVDGELTGV----LSISDP-----LKPGAHGVISILKSMQIRSILVTGDNW------------GTAKSIASEVGI 764 (922)
Q Consensus 706 ~~l~v~~~~~~~G~----~~~~d~-----~r~~~~~~i~~l~~~gi~~~~~tgd~~------------~~a~~ia~~~gi 764 (922)
+.+++..|++++-. ....|+ +.|++.+.|+.|++.|++++|+|.-.. ..+..+.+++|+
T Consensus 169 Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgi 248 (526)
T TIGR01663 169 KIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGV 248 (526)
T ss_pred cEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCC
Confidence 45667778877632 112221 579999999999999999999998655 346788888887
Q ss_pred c--eEEec-CCh--hhHHHHHHHHHH-c-------CCeEEEEcCCcccHHHHHhC
Q 039776 765 E--TVIAE-AKP--EQKAEKVEELQA-S-------GYTVAMVGDGINDSPALVAA 806 (922)
Q Consensus 765 ~--~~~~~-~~p--~~K~~~v~~l~~-~-------g~~v~~vGDg~nD~~al~~A 806 (922)
. .+++. -.. .-+...+..+.+ . .....||||...|..+-+.|
T Consensus 249 pfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~a 303 (526)
T TIGR01663 249 PFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAA 303 (526)
T ss_pred ceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhc
Confidence 5 22221 001 112333333322 1 24689999999998764443
No 188
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=89.39 E-value=0.38 Score=49.83 Aligned_cols=78 Identities=23% Similarity=0.404 Sum_probs=56.4
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHhCCc---eEEecCCh--------hhHHHHHHHHHHcC-Ce
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWG---TAKSIASEVGIE---TVIAEAKP--------EQKAEKVEELQASG-YT 789 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~---~a~~ia~~~gi~---~~~~~~~p--------~~K~~~v~~l~~~g-~~ 789 (922)
+.-|++.+.++.++++|++|+++||++.. .+..-.++.|+. .++.+... +-|...-+.++++| +.
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~I 194 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRI 194 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCcE
Confidence 45578999999999999999999997655 344555677874 33322211 23778888888886 46
Q ss_pred EEEEcCCcccHHH
Q 039776 790 VAMVGDGINDSPA 802 (922)
Q Consensus 790 v~~vGDg~nD~~a 802 (922)
++++||..+|...
T Consensus 195 i~~iGD~~~D~~~ 207 (229)
T PF03767_consen 195 IANIGDQLSDFSG 207 (229)
T ss_dssp EEEEESSGGGCHC
T ss_pred EEEeCCCHHHhhc
Confidence 8889999999755
No 189
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=87.80 E-value=3.3 Score=43.41 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=52.9
Q ss_pred CCCcchhHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHhCCc---eEEecCCh--------hhHHHHHHHHHHcCC
Q 039776 723 SDPLKPGAHGVISILKSMQIRSILVTGDNWGT---AKSIASEVGIE---TVIAEAKP--------EQKAEKVEELQASGY 788 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~---a~~ia~~~gi~---~~~~~~~p--------~~K~~~v~~l~~~g~ 788 (922)
+.|.-|++.+..+.+++.|++++++||+.+.. +..-.++.|.. +++-|-.. +.|...-+.+.++|+
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGY 222 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGY 222 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCc
Confidence 34566899999999999999999999998642 22333456874 33443221 124444455556665
Q ss_pred -eEEEEcCCcccH
Q 039776 789 -TVAMVGDGINDS 800 (922)
Q Consensus 789 -~v~~vGDg~nD~ 800 (922)
.++.+||..+|.
T Consensus 223 rIv~~iGDq~sDl 235 (275)
T TIGR01680 223 NIVGIIGDQWNDL 235 (275)
T ss_pred eEEEEECCCHHhc
Confidence 577899999996
No 190
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=87.62 E-value=0.38 Score=46.98 Aligned_cols=86 Identities=9% Similarity=0.036 Sum_probs=61.8
Q ss_pred CCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce-EEe----c-CChhhHHHHHHHHHHc---CCeEEEEc
Q 039776 724 DPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET-VIA----E-AKPEQKAEKVEELQAS---GYTVAMVG 794 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~-~~~----~-~~p~~K~~~v~~l~~~---g~~v~~vG 794 (922)
=..||++.+.+++|++. +++++.|......|..+.+.++... ++. + -....|..+++.|..- ..+|.|||
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVD 119 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIID 119 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEe
Confidence 35899999999999988 9999999999999999999999764 322 1 1111122244444443 35799999
Q ss_pred CCcccHHHHHhCCceE
Q 039776 795 DGINDSPALVAADVGM 810 (922)
Q Consensus 795 Dg~nD~~al~~A~vgi 810 (922)
|...|..+-+.+.+-|
T Consensus 120 D~~~~~~~~~~NgI~i 135 (162)
T TIGR02251 120 NSPYSYSLQPDNAIPI 135 (162)
T ss_pred CChhhhccCccCEeec
Confidence 9999887655554443
No 191
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=86.85 E-value=2.1 Score=41.80 Aligned_cols=86 Identities=14% Similarity=0.212 Sum_probs=59.7
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEc-CCCHHHHHHHHHHhCCc----------eEEe--cCChhhHHHHHHHHHHc----C
Q 039776 725 PLKPGAHGVISILKSMQIRSILVT-GDNWGTAKSIASEVGIE----------TVIA--EAKPEQKAEKVEELQAS----G 787 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~t-gd~~~~a~~ia~~~gi~----------~~~~--~~~p~~K~~~v~~l~~~----g 787 (922)
.+.|+++++++.|++.|+++.++| -+.+..|+.+.+.+++. .+|. ++-|..|..-.+.++++ -
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y 124 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPY 124 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---G
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCCh
Confidence 478999999999999999999999 47788999999999998 5554 55678898888888764 3
Q ss_pred CeEEEEcCCcccHHHHHhCCceEEe
Q 039776 788 YTVAMVGDGINDSPALVAADVGMAI 812 (922)
Q Consensus 788 ~~v~~vGDg~nD~~al~~A~vgia~ 812 (922)
+.++++=|-.......+. +||..
T Consensus 125 ~eMlFFDDe~~N~~~v~~--lGV~~ 147 (169)
T PF12689_consen 125 EEMLFFDDESRNIEVVSK--LGVTC 147 (169)
T ss_dssp GGEEEEES-HHHHHHHHT--TT-EE
T ss_pred hHEEEecCchhcceeeEe--cCcEE
Confidence 568888887665555444 55553
No 192
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=86.85 E-value=0.97 Score=48.57 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHHCCCEEEEEcCCCHHHH----------HH----HHHHhCCceE-EecCChhhHHHHHHHHHHcCCeEE
Q 039776 727 KPGAHGVISILKSMQIRSILVTGDNWGTA----------KS----IASEVGIETV-IAEAKPEQKAEKVEELQASGYTVA 791 (922)
Q Consensus 727 r~~~~~~i~~l~~~gi~~~~~tgd~~~~a----------~~----ia~~~gi~~~-~~~~~p~~K~~~v~~l~~~g~~v~ 791 (922)
.+++.++++.|++.|+ ..++|+...... .. +....|-... ....+|+-=..+++.+....++++
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l 223 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL 223 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence 6889999999999997 567776443211 01 1111122221 223333333344555544567899
Q ss_pred EEcCCc-ccHHHHHhCCce
Q 039776 792 MVGDGI-NDSPALVAADVG 809 (922)
Q Consensus 792 ~vGDg~-nD~~al~~A~vg 809 (922)
||||.. .|+.+.++|++-
T Consensus 224 mIGD~~~tDI~~A~~aGi~ 242 (279)
T TIGR01452 224 MVGDRLETDILFGHRCGMT 242 (279)
T ss_pred EECCChHHHHHHHHHcCCc
Confidence 999995 999999999943
No 193
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=86.55 E-value=1.6 Score=46.27 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=48.5
Q ss_pred eEEEEEECCEEEEEEEcCCC--cc-hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceE
Q 039776 706 TEILVSVDGELTGVLSISDP--LK-PGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETV 767 (922)
Q Consensus 706 ~~l~v~~~~~~~G~~~~~d~--~r-~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~ 767 (922)
+.+.+..|++++-- +.+ +| |++.+++++|+++|+++.++|+.+...+..+.+.+|+..+
T Consensus 129 ~~i~~D~D~TL~~~---~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~y 190 (303)
T PHA03398 129 HVIVFDLDSTLITD---EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGY 190 (303)
T ss_pred cEEEEecCCCccCC---CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCcc
Confidence 45666778887654 444 45 9999999999999999999998888888999999999743
No 194
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=86.42 E-value=2.2 Score=45.76 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=62.0
Q ss_pred EEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHH---HHHHhCCceEEecC-ChhhHHHHHHH
Q 039776 707 EILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKS---IASEVGIETVIAEA-KPEQKAEKVEE 782 (922)
Q Consensus 707 ~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~---ia~~~gi~~~~~~~-~p~~K~~~v~~ 782 (922)
.+.+-.||++. -.+..-|++.++|++|++.|++++++||....+... -.+.+|++.-..++ ++. ....+.
T Consensus 4 ~~~~D~DGtl~----~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~--~~~~~~ 77 (279)
T TIGR01452 4 GFIFDCDGVLW----LGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA--LCAARL 77 (279)
T ss_pred EEEEeCCCceE----cCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH--HHHHHH
Confidence 45556676664 367788899999999999999999999976443332 33567875321111 111 112233
Q ss_pred HHH---cCCeEEEEcCCcccHHHHHhCCceEE
Q 039776 783 LQA---SGYTVAMVGDGINDSPALVAADVGMA 811 (922)
Q Consensus 783 l~~---~g~~v~~vGDg~nD~~al~~A~vgia 811 (922)
|++ .+.+|.++|+. .....++.+++-+.
T Consensus 78 l~~~~~~~~~v~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 78 LRQPPDAPKAVYVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred HHhhCcCCCEEEEEcCH-HHHHHHHHCCCEEe
Confidence 444 35789999986 34556776766544
No 195
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=86.00 E-value=4.9 Score=38.57 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=63.3
Q ss_pred CCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHH---HHHHHh-----CCc-----------------eEEecCChhhHH
Q 039776 723 SDPLKPGAHGVISILKSMQIRSILVTGDNWGTAK---SIASEV-----GIE-----------------TVIAEAKPEQKA 777 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~---~ia~~~-----gi~-----------------~~~~~~~p~~K~ 777 (922)
.|..++++.+..+.+++.|++++-+|+++...+. ...+.. +++ ++..+-..+.|.
T Consensus 25 ~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 25 KDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred chhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhccccccChHHHHH
Confidence 3688999999999999999999999999865443 344444 443 112222335688
Q ss_pred HHHHHHHHc----C-CeEEEEcCCcccHHHHHhCCce
Q 039776 778 EKVEELQAS----G-YTVAMVGDGINDSPALVAADVG 809 (922)
Q Consensus 778 ~~v~~l~~~----g-~~v~~vGDg~nD~~al~~A~vg 809 (922)
..++.++.. + .-++..|...+|+.+-+++++.
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 888888875 2 3477789989999998887764
No 196
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=85.33 E-value=1.1 Score=37.28 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEcCC-cccHHHHHhCCce-EEecCC---cHHH---HHhcCEEEeCCChhh
Q 039776 772 KPEQKAEKVEELQASGYTVAMVGDG-INDSPALVAADVG-MAIGAG---TDIA---IEAADIVLMKSNLED 834 (922)
Q Consensus 772 ~p~~K~~~v~~l~~~g~~v~~vGDg-~nD~~al~~A~vg-ia~~~~---~~~~---~~~ad~vl~~~~~~~ 834 (922)
.|.-=..+.+.+......++||||. ..|+.+-+++++- |.+.+| .+.. ...+|+|+ +++.+
T Consensus 6 ~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv--~~l~e 74 (75)
T PF13242_consen 6 SPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVV--DDLKE 74 (75)
T ss_dssp SHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEE--SSGGG
T ss_pred cHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEE--CCHHh
Confidence 3333344555555456789999999 9999999999943 333332 2222 25788887 45543
No 197
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=85.31 E-value=1 Score=44.36 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=53.0
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec-----C----ChhhH--HHHHHHHHHcCCeEEEE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE-----A----KPEQK--AEKVEELQASGYTVAMV 793 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~-----~----~p~~K--~~~v~~l~~~g~~v~~v 793 (922)
++.|++.++++ ++.++|+-+........+++|+..++.. . .|... ....+.+.-..+.++||
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMV 162 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeE
Confidence 57899999998 3679999999888888999998744321 1 12111 33444444445679999
Q ss_pred cCCcccHHHHHhC
Q 039776 794 GDGINDSPALVAA 806 (922)
Q Consensus 794 GDg~nD~~al~~A 806 (922)
||...|+.+.+++
T Consensus 163 gD~~~Di~~A~~~ 175 (175)
T TIGR01493 163 AAHQWDLIGARKF 175 (175)
T ss_pred ecChhhHHHHhcC
Confidence 9999999887653
No 198
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=84.71 E-value=6.1 Score=33.47 Aligned_cols=63 Identities=32% Similarity=0.564 Sum_probs=47.3
Q ss_pred EEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCc
Q 039776 72 CRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFE 134 (922)
Q Consensus 72 ~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~ 134 (922)
..+.+.++.|..|...++..+...+++.....+.......+.+++.......+.......||.
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 87 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYP 87 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 457789999999999999999999998888888888877776654433445554555566665
No 199
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=84.41 E-value=2.5 Score=44.09 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=27.8
Q ss_pred EECCEEEEEEEcC--CCcchhHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCC
Q 039776 711 SVDGELTGVLSIS--DPLKPGAHGVISILKSM-QIRSILVTGDNWGTAKSIASEVGI 764 (922)
Q Consensus 711 ~~~~~~~G~~~~~--d~~r~~~~~~i~~l~~~-gi~~~~~tgd~~~~a~~ia~~~gi 764 (922)
.+||++..+..-. -.+.+++.+++++|.+. +..++|+||+..........--++
T Consensus 3 DyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~i 59 (235)
T PF02358_consen 3 DYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGIPNI 59 (235)
T ss_dssp E-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-SS-
T ss_pred ccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCCCCc
Confidence 3455555444422 24568899999999876 446999999999886555444444
No 200
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=84.30 E-value=4.8 Score=44.18 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=35.2
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-C
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEV-G 763 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~-g 763 (922)
..|++.+++++|+++|+++.++|+-....+..+.+.+ |
T Consensus 185 ~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 185 RDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred cchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 3679999999999999999999999999999999996 7
No 201
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=83.98 E-value=1.6 Score=42.62 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=42.6
Q ss_pred hhhHHHHHhhhccCCCeeEEEecCCCc-------------------eEEEEecCCCCChhhHHHHHHhh
Q 039776 158 DHSVTMIESSLQALPGVLDIDLDPSIH-------------------KISISYKPAMTGPRNFIKMIEST 207 (922)
Q Consensus 158 ~~c~~~ie~~l~~~~GV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 207 (922)
..|-|-+|..+.++|||.++.+-++++ .+.|.|||..++.++|++..=..
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 469999999999999999999976654 37899999999999999876544
No 202
>PTZ00445 p36-lilke protein; Provisional
Probab=82.25 E-value=5.9 Score=39.80 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=74.6
Q ss_pred HHHHHHHhccCceEEEEEECCEEEE--EEEcCCC----------cchhHHHHHHHHHHCCCEEEEEc-CCCHH-------
Q 039776 694 EEMLTETEGMAQTEILVSVDGELTG--VLSISDP----------LKPGAHGVISILKSMQIRSILVT-GDNWG------- 753 (922)
Q Consensus 694 ~~~~~~~~~~~~~~l~v~~~~~~~G--~~~~~d~----------~r~~~~~~i~~l~~~gi~~~~~t-gd~~~------- 753 (922)
....+.+.+.|-+.+.+..|.++++ .=+.-++ ++|+.+..+++|++.|+++.++| .|...
T Consensus 32 ~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~ 111 (219)
T PTZ00445 32 DKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRP 111 (219)
T ss_pred HHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCc
Confidence 3445667888989888888888776 1112333 79999999999999999999998 44433
Q ss_pred -------HHHHHHHHhC----CceEEec------------------CChhhHHHHHHHHHH----cCCeEEEEcCCcccH
Q 039776 754 -------TAKSIASEVG----IETVIAE------------------AKPEQKAEKVEELQA----SGYTVAMVGDGINDS 800 (922)
Q Consensus 754 -------~a~~ia~~~g----i~~~~~~------------------~~p~~K~~~v~~l~~----~g~~v~~vGDg~nD~ 800 (922)
-+....+..+ |..+++- ..|+-|.--.+.+.+ ..+.++++-|....+
T Consensus 112 ~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NV 191 (219)
T PTZ00445 112 RYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNC 191 (219)
T ss_pred ceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHH
Confidence 2333334332 3333321 133343232233332 346799999999999
Q ss_pred HHHHhCCc
Q 039776 801 PALVAADV 808 (922)
Q Consensus 801 ~al~~A~v 808 (922)
.+.+..++
T Consensus 192 eaA~~lGi 199 (219)
T PTZ00445 192 KNALKEGY 199 (219)
T ss_pred HHHHHCCC
Confidence 99888664
No 203
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=81.52 E-value=6.6 Score=33.25 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=46.7
Q ss_pred ceeeeecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhC
Q 039776 147 KIHLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTA 208 (922)
Q Consensus 147 ~~~~~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g 208 (922)
+..+.+.|+.|..|...++..+...+++....++...+...+.+++.......+.+..+..|
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAG 85 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcC
Confidence 45677899999999999999999999999899998888877777654334444434444444
No 204
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=80.45 E-value=2.9 Score=43.08 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=42.0
Q ss_pred EEECCEEEEEEEcCCC-cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc
Q 039776 710 VSVDGELTGVLSISDP-LKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE 765 (922)
Q Consensus 710 v~~~~~~~G~~~~~d~-~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~ 765 (922)
.-.||+++. .+. ..+.++++|+.|+++|++++++||+....+..+.+++|++
T Consensus 4 ~DlDGTLL~----~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 4 SDLDGTLLD----SHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EeCCCCCcC----CCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 345666653 233 4445899999999999999999999999999999999975
No 205
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=80.39 E-value=15 Score=38.23 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=52.7
Q ss_pred EEEcCCCcchhHHHHHHHHHHCCCEEEEEc---CCCHHHHH-HHHHHhCCceEEecCChhhH----HHHHHHHHH--cCC
Q 039776 719 VLSISDPLKPGAHGVISILKSMQIRSILVT---GDNWGTAK-SIASEVGIETVIAEAKPEQK----AEKVEELQA--SGY 788 (922)
Q Consensus 719 ~~~~~d~~r~~~~~~i~~l~~~gi~~~~~t---gd~~~~a~-~ia~~~gi~~~~~~~~p~~K----~~~v~~l~~--~g~ 788 (922)
++.-.+.+-|++.++++.++++|++++++| |....... .+.+..|++ ++|++= ....+.+++ .++
T Consensus 8 vL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~-----~~~~~iits~~~~~~~l~~~~~~~ 82 (236)
T TIGR01460 8 VLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD-----VSPDQIITSGSVTKDLLRQRFEGE 82 (236)
T ss_pred ccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC-----CCHHHeeeHHHHHHHHHHHhCCCC
Confidence 344457778899999999999999999998 55555443 344336764 233321 112233332 356
Q ss_pred eEEEEcCCcccHHHHHhCCc
Q 039776 789 TVAMVGDGINDSPALVAADV 808 (922)
Q Consensus 789 ~v~~vGDg~nD~~al~~A~v 808 (922)
+|..+|.. .....++.+++
T Consensus 83 ~v~v~G~~-~~~~~l~~~g~ 101 (236)
T TIGR01460 83 KVYVIGVG-ELRESLEGLGF 101 (236)
T ss_pred EEEEECCH-HHHHHHHHcCC
Confidence 79999974 45556666554
No 206
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=80.34 E-value=5 Score=41.36 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=64.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec---------CChhhH--HHHHHHHHHcCCeEEEEc
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE---------AKPEQK--AEKVEELQASGYTVAMVG 794 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~---------~~p~~K--~~~v~~l~~~g~~v~~vG 794 (922)
+-++..++++.||+.|..+.++|.=.. ....+-..+|+..+|.- ..|+.+ ...++.+..+.+.+++||
T Consensus 114 ~~~~~~~~lq~lR~~g~~l~iisN~d~-r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIg 192 (237)
T KOG3085|consen 114 YLDGMQELLQKLRKKGTILGIISNFDD-RLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIG 192 (237)
T ss_pred eccHHHHHHHHHHhCCeEEEEecCCcH-HHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEec
Confidence 445667999999999988888885222 23366777777533321 234333 345666666678899999
Q ss_pred CC-cccHHHHHhCC-ceEEecCCcHHHHHh
Q 039776 795 DG-INDSPALVAAD-VGMAIGAGTDIAIEA 822 (922)
Q Consensus 795 Dg-~nD~~al~~A~-vgia~~~~~~~~~~~ 822 (922)
|. .||....+.++ .++-+.++....++.
T Consensus 193 D~l~nD~~gA~~~G~~ailv~~~~~~~~~~ 222 (237)
T KOG3085|consen 193 DLLENDYEGARNLGWHAILVDNSITALKEL 222 (237)
T ss_pred CccccccHhHHHcCCEEEEEccccchhhhh
Confidence 98 89999999888 456666554444433
No 207
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=79.83 E-value=3 Score=39.99 Aligned_cols=50 Identities=12% Similarity=0.284 Sum_probs=41.9
Q ss_pred hhhHHHHHhhhccCCCeeEEEecCCC--------------ceEEEEecCCCCChhhHHHHHHhh
Q 039776 158 DHSVTMIESSLQALPGVLDIDLDPSI--------------HKISISYKPAMTGPRNFIKMIEST 207 (922)
Q Consensus 158 ~~c~~~ie~~l~~~~GV~~~~vn~~~--------------~~~~v~~~~~~~~~~~i~~~i~~~ 207 (922)
..|-|-+|..+.+++||.++++-+++ +.+.|.|||..++.++|++..=..
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~ 71 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFEI 71 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999999999986553 347899999999999999876543
No 208
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=78.36 E-value=4.7 Score=39.71 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=55.0
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCC-----H----------HHHHHHHHHhCC--c-eEEecCChhh-------HHHH-
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDN-----W----------GTAKSIASEVGI--E-TVIAEAKPEQ-------KAEK- 779 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~-----~----------~~a~~ia~~~gi--~-~~~~~~~p~~-------K~~~- 779 (922)
+.+++.+++..|+++|++++|+|.-. . .--..+-+..|+ + .++|.-.|++ |...
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~ 111 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGML 111 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHH
Confidence 56889999999999999999999622 1 111223334442 2 3344444443 2333
Q ss_pred HHHHHHc---CCeEEEEcCCcccHHHHHhCCce
Q 039776 780 VEELQAS---GYTVAMVGDGINDSPALVAADVG 809 (922)
Q Consensus 780 v~~l~~~---g~~v~~vGDg~nD~~al~~A~vg 809 (922)
.+.+++. -..-.||||-..|..+..++++.
T Consensus 112 ~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 112 LSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred HHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence 3333333 36789999999999999999877
No 209
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=77.95 E-value=15 Score=38.68 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=50.7
Q ss_pred HHhccCceEEEEEECCEEEEEEEcC--CCcchhHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCC
Q 039776 699 ETEGMAQTEILVSVDGELTGVLSIS--DPLKPGAHGVISILKSM-QIRSILVTGDNWGTAKSIASEVGI 764 (922)
Q Consensus 699 ~~~~~~~~~l~v~~~~~~~G~~~~~--d~~r~~~~~~i~~l~~~-gi~~~~~tgd~~~~a~~ia~~~gi 764 (922)
.+....++.+++.+||++.-.+-.- ..+.++..+++++|... ...++|+||...........-.|+
T Consensus 12 ~~~~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i 80 (266)
T COG1877 12 PYLNARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI 80 (266)
T ss_pred ccccccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc
Confidence 3445567778888999887666554 45668899999999987 446899999999998887775555
No 210
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=77.71 E-value=7.9 Score=39.08 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=42.7
Q ss_pred hhhHHHHHhhhccCCCeeEEEecCCC-------------------ceEEEEecCCCCChhhHHHHHHhh
Q 039776 158 DHSVTMIESSLQALPGVLDIDLDPSI-------------------HKISISYKPAMTGPRNFIKMIEST 207 (922)
Q Consensus 158 ~~c~~~ie~~l~~~~GV~~~~vn~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~~ 207 (922)
..|-|-+|..+.+++||.++.+-+++ +.+.|.|||..++.++|++..=..
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~ 120 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWEN 120 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHh
Confidence 46999999999999999999997763 347899999999999999876544
No 211
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.34 E-value=16 Score=42.44 Aligned_cols=117 Identities=13% Similarity=0.153 Sum_probs=68.6
Q ss_pred CCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEEecce--eeecccccCCCcccccCCC---CeeecCcccccceEEE
Q 039776 391 EGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKS--YVNESMITGEAWPVAKREG---DTVTGGTLNENGVLHI 465 (922)
Q Consensus 391 ~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~~--~vdes~lTGEs~pv~k~~g---~~v~~Gs~~~~g~~~~ 465 (922)
||. ..++|..-|+.||||-++||+.-||.+.=++++- ...| |.-.|-.-++. -.+-+|-.--.....+
T Consensus 163 DGh---lm~lP~~LLVeGDiIa~RPGQeafan~~g~~ddehiVL~~----GDlfpp~~~p~sprge~erG~q~P~ehrl~ 235 (1354)
T KOG4383|consen 163 DGH---LMELPRILLVEGDIIAFRPGQEAFANCEGFDDDEHIVLAE----GDLFPPDIKPDSPRGEKERGFQDPLEHRLA 235 (1354)
T ss_pred cCe---eeecceeEEEeccEEEecCCccccccccccCCCceeEecc----CccCCCCCCCCCcccccccCCCCccchhhh
Confidence 787 6789999999999999999999999887776642 1222 33333322221 2344555544566677
Q ss_pred EEEEecCccHHHHHHHHHHHhhccCChhH------HHHHH-HhcchhhHHHHHHHHHHHH
Q 039776 466 KATRVGSESALAQIVRLVESAQMAKAPVQ------KFADR-ASKYFVPLVIILSFSTWLA 518 (922)
Q Consensus 466 ~v~~~g~~t~~~~i~~~~~~~~~~~~~l~------~~~~~-~~~~~~~~~~~~~~~~~~~ 518 (922)
+|+.+.--..+ +....+...++|++ -.... +-.|.+|+++...++.-+.
T Consensus 236 RVl~tPiid~i----~~~Ld~a~Srp~~a~Dne~qf~i~nV~~HYaiPV~La~fii~nal 291 (1354)
T KOG4383|consen 236 RVLCTPIIDHI----ETALDAADSRPPLAFDNELQFMIHNVFEHYAIPVALACFIIGNAL 291 (1354)
T ss_pred eeehhhhHHHH----HHHHhhhhcCCccccchHHHHHHHHHHHHHhHHHHHHHHHHHhHh
Confidence 88776543222 22223333444443 22222 3456677777666655443
No 212
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=76.91 E-value=3 Score=41.22 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=42.2
Q ss_pred hhhHHHHHhhhccCCCeeEEEecCCCc-------------------eEEEEecCCCCChhhHHHHHHhh
Q 039776 158 DHSVTMIESSLQALPGVLDIDLDPSIH-------------------KISISYKPAMTGPRNFIKMIEST 207 (922)
Q Consensus 158 ~~c~~~ie~~l~~~~GV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 207 (922)
..|-|-+|..+.+++||.++++-++++ .+.|.|||..++.++|++..=..
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~~ 83 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFST 83 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHHh
Confidence 468899999999999999999966644 37899999999999999876544
No 213
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=76.61 E-value=3.2 Score=43.46 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC------------CceE-EecCChhhHHHHHHHHHHc-CCeEEE
Q 039776 727 KPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVG------------IETV-IAEAKPEQKAEKVEELQAS-GYTVAM 792 (922)
Q Consensus 727 r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~g------------i~~~-~~~~~p~~K~~~v~~l~~~-g~~v~~ 792 (922)
.++..++++.|++.|++. ++|+.....+.......| -+.. .....|+-=....+.+... .++++|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 589999999999999997 778765443322222222 2221 2222222223334444322 347999
Q ss_pred EcCC-cccHHHHHhCCceE
Q 039776 793 VGDG-INDSPALVAADVGM 810 (922)
Q Consensus 793 vGDg-~nD~~al~~A~vgi 810 (922)
|||. .+|..+-+.|++-.
T Consensus 219 vGD~~~~Di~~a~~~G~~~ 237 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDT 237 (242)
T ss_pred ECCCcHHHHHHHHHCCCeE
Confidence 9999 59999999988653
No 214
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=75.08 E-value=7.8 Score=37.27 Aligned_cols=86 Identities=27% Similarity=0.288 Sum_probs=58.6
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHhCCc----eEEecCChh-hHHHHHHHHHHcCCeEEEEcCC
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNWG----TAKSIASEVGIE----TVIAEAKPE-QKAEKVEELQASGYTVAMVGDG 796 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~~----~a~~ia~~~gi~----~~~~~~~p~-~K~~~v~~l~~~g~~v~~vGDg 796 (922)
+++-+++.|..=.++|=.++.+||+... ++..+|+.+.|. ..|+.-.|. .+..-...+|+++ .-..-||.
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~~-~~IhYGDS 193 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDKN-IRIHYGDS 193 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhcC-ceEEecCC
Confidence 4555788888888999999999998654 567777877775 344433331 1222234455555 34577999
Q ss_pred cccHHHHHhCCc-eEEe
Q 039776 797 INDSPALVAADV-GMAI 812 (922)
Q Consensus 797 ~nD~~al~~A~v-gia~ 812 (922)
.||+.|.+.|++ ||-+
T Consensus 194 D~Di~AAkeaG~RgIRi 210 (237)
T COG3700 194 DNDITAAKEAGARGIRI 210 (237)
T ss_pred chhhhHHHhcCccceeE
Confidence 999999999984 4544
No 215
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=73.70 E-value=5.1 Score=38.69 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=42.0
Q ss_pred hhhHHHHHhhhccCCCeeEEEecCCC-------------------ceEEEEecCCCCChhhHHHHHHhh
Q 039776 158 DHSVTMIESSLQALPGVLDIDLDPSI-------------------HKISISYKPAMTGPRNFIKMIEST 207 (922)
Q Consensus 158 ~~c~~~ie~~l~~~~GV~~~~vn~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~~ 207 (922)
..|-|-+|+...++|||.++.+-+++ +.+.|.|||..++.++|++..=+.
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~i 81 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEI 81 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhee
Confidence 36889999999999999999985553 356899999999999999986544
No 216
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=73.30 E-value=86 Score=40.57 Aligned_cols=127 Identities=12% Similarity=0.209 Sum_probs=71.0
Q ss_pred HHHHHHHhhcCCCeeEEEEEecCCeEEEE--EcCCCCCH----HHHHHHHHccCc--cccccCC---ccccccceEEEEE
Q 039776 7 AVSIEKAIKRLPGIHDAVVDVLNNRAQVL--FYPFFVNE----ETILEAIEGVGF--KATLVPG---ETIEKSTQVCRIR 75 (922)
Q Consensus 7 ~~~i~~~l~~~~gV~~v~v~~~~~~~~v~--~~~~~~~~----~~i~~~v~~~gy--~~~~~~~---~~~~~~~~~~~~~ 75 (922)
...+|++++.++|+++++-.-..+...+. ++.. .+. .++.+.+.+.-. +...-.+ ...........+.
T Consensus 62 t~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~i~~~~~~LP~~~~~p~i~~~~~~~~~i~~~~ 140 (1021)
T PF00873_consen 62 TKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDG-TDIDEALQEVREKIDQIRSDLPPGVEEPQIFKFDPSDSPIMILA 140 (1021)
T ss_dssp HHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTT-S-HHHHHHHHHHHHHHHGGGS-HHHHHHEEEEEEEECCEEEEEE
T ss_pred HHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccc-cCHHHHHHHHHHHHHhhhhhCcccccCCceeeccCCCceeEEEE
Confidence 35789999999999999876666655554 4442 333 345555555421 1111000 0000111223344
Q ss_pred EcCC----CCC----ccHHHHHHHHhccCCceEEEeee-cCCeEEEEecCCC-----CCHHHHHHHHHhcCCc
Q 039776 76 IKKL----TCT----SCSSTVEKTFQAIQGVQNAHVTL-ATEEAEVHYDPRI-----LSCNQLLKAIEDTGFE 134 (922)
Q Consensus 76 i~gm----~C~----~C~~~ie~~l~~~~Gv~~~~v~~-~~~~~~v~~d~~~-----~~~~~i~~~i~~~G~~ 134 (922)
+.+- +-. .....++..|++++||.++.+.= ..++..+..||++ .+..++...+......
T Consensus 141 l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v~~~l~~~n~~ 213 (1021)
T PF00873_consen 141 LTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDVAQALQANNVN 213 (1021)
T ss_dssp EEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHHHHHHHHHSCE
T ss_pred eccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHHHHHHHHhhhh
Confidence 4433 111 12346888999999999998753 4567788888863 5677888888766543
No 217
>PLN02423 phosphomannomutase
Probab=71.61 E-value=5.6 Score=41.74 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=36.2
Q ss_pred cCCh--hhHHHHHHHHHHcCCeEEEEcC----CcccHHHHHh-CCceEEecC
Q 039776 770 EAKP--EQKAEKVEELQASGYTVAMVGD----GINDSPALVA-ADVGMAIGA 814 (922)
Q Consensus 770 ~~~p--~~K~~~v~~l~~~g~~v~~vGD----g~nD~~al~~-A~vgia~~~ 814 (922)
++.| -+|..-++.|+ ....|+++|| |.||.+||+. -=.|+++.+
T Consensus 182 Di~~~gvnKg~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 182 DVFPQGWDKTYCLQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred EEeeCCCCHHHHHHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 4444 36999999999 7889999999 8999999997 557788764
No 218
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=71.60 E-value=11 Score=39.01 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=67.8
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCc----eEEec-----------------CChhhHHH-HH--
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIE----TVIAE-----------------AKPEQKAE-KV-- 780 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~----~~~~~-----------------~~p~~K~~-~v-- 780 (922)
.+|+++.+.++.|++.++.+.+.|+--......+.++.|.. ++.++ +-+-.|-. .+
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~~ 169 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALED 169 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHTT
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccccC
Confidence 58999999999999999999999988888888888887753 11111 11223332 11
Q ss_pred -HHHHH--cCCeEEEEcCCcccHHHHHhC---CceEEec--CC-----cHHHHHhcCEEEeCCChhhHHHHH
Q 039776 781 -EELQA--SGYTVAMVGDGINDSPALVAA---DVGMAIG--AG-----TDIAIEAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 781 -~~l~~--~g~~v~~vGDg~nD~~al~~A---~vgia~~--~~-----~~~~~~~ad~vl~~~~~~~l~~~i 839 (922)
...++ ....|...||...|+.|..-. +.-+.+| +. -+.-+++-|+|+.+|.--.++..|
T Consensus 170 ~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~tm~v~~~i 241 (246)
T PF05822_consen 170 SPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQTMDVPNAI 241 (246)
T ss_dssp HHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--B-HHHHHH
T ss_pred chHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCCCchHHHHH
Confidence 11111 235699999999999997555 3334444 32 234567889999988655555443
No 219
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=71.54 E-value=6.9 Score=37.31 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=41.5
Q ss_pred hhhHHHHHhhhccCCCeeEEEecCCC-------------------ceEEEEecCCCCChhhHHHHHHhh
Q 039776 158 DHSVTMIESSLQALPGVLDIDLDPSI-------------------HKISISYKPAMTGPRNFIKMIEST 207 (922)
Q Consensus 158 ~~c~~~ie~~l~~~~GV~~~~vn~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~~ 207 (922)
..|-|-+|..+.+++||.++++-+++ +.+.|.|||..++.++|++..=+.
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~~ 75 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWEI 75 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHHh
Confidence 46899999999999999999985442 456899999999999999975543
No 220
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=70.51 E-value=60 Score=34.66 Aligned_cols=103 Identities=22% Similarity=0.350 Sum_probs=60.6
Q ss_pred HhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC---ChhhH
Q 039776 700 TEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA---KPEQK 776 (922)
Q Consensus 700 ~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~---~p~~K 776 (922)
...+|...+++.-+..-+| +. +.++++-+-|-+. +..++.-+..+.+...+|+..+++.+-+-. -|-|-
T Consensus 66 ~~qlGg~~~~l~~~~~Qlg----r~---Esi~DTArVLsr~-~D~I~~R~~~~~~ve~lA~~s~VPViNgLtD~~HP~Q~ 137 (310)
T COG0078 66 ATQLGGHAIYLGPGDSQLG----RG---ESIKDTARVLSRM-VDAIMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQA 137 (310)
T ss_pred HHHcCCCeEEeCCCccccC----CC---CcHHHHHHHHHhh-hheEEEecccHHHHHHHHHhCCCceEcccccccCcHHH
Confidence 4456777777766654444 22 3334444444433 456899999999999999999988544322 34333
Q ss_pred HHHHHHHHH-----cCCeEEEEcCCcccH--HHHHhCCceE
Q 039776 777 AEKVEELQA-----SGYTVAMVGDGINDS--PALVAADVGM 810 (922)
Q Consensus 777 ~~~v~~l~~-----~g~~v~~vGDg~nD~--~al~~A~vgi 810 (922)
..=+..+++ +|.+++++|||-|=+ .++..|-+|+
T Consensus 138 LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~ 178 (310)
T COG0078 138 LADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGM 178 (310)
T ss_pred HHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCC
Confidence 221222222 468999999995522 2334444443
No 221
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=68.27 E-value=28 Score=24.37 Aligned_cols=56 Identities=43% Similarity=0.802 Sum_probs=37.7
Q ss_pred EcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcC
Q 039776 76 IKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTG 132 (922)
Q Consensus 76 i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G 132 (922)
+.++.|..|...++..+...+++.....++......+.++.. .....+.......+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 59 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE-VSPEELLEAIEDAG 59 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCC-CCHHHHHHHHHHcC
Confidence 568889999999998888888877777777666666665443 23344333333333
No 222
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=68.05 E-value=31 Score=34.00 Aligned_cols=127 Identities=21% Similarity=0.194 Sum_probs=78.0
Q ss_pred cCCCcchhHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHcCCeEEEEcCC--cc
Q 039776 722 ISDPLKPGAHGVISIL-KSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDG--IN 798 (922)
Q Consensus 722 ~~d~~r~~~~~~i~~l-~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg--~n 798 (922)
+.+-.-+++.+..+++ .+.|.++++..| .+|..+.+.++++.+--.++..|=.+.+...+..+.+++++|.. ..
T Consensus 14 v~~~~~e~~v~~a~~~~~~~g~dViIsRG---~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~ 90 (176)
T PF06506_consen 14 VIEASLEEAVEEARQLLESEGADVIISRG---GTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIP 90 (176)
T ss_dssp EEE--HHHHHHHHHHHHTTTT-SEEEEEH---HHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SC
T ss_pred EEEecHHHHHHHHHHhhHhcCCeEEEECC---HHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccH
Confidence 3444557778888888 789999999987 47778888889988888887777777777766667777777654 22
Q ss_pred cHHHH--------------------------HhCCceEEecCC--cHHHHH-hcCEEEeCCChhhHHHHHHHHHHHHHHH
Q 039776 799 DSPAL--------------------------VAADVGMAIGAG--TDIAIE-AADIVLMKSNLEDEITAIDLSRKTFSRI 849 (922)
Q Consensus 799 D~~al--------------------------~~A~vgia~~~~--~~~~~~-~ad~vl~~~~~~~l~~~i~~~r~~~~~i 849 (922)
|...+ +..++.+-+|++ .+.|++ .-..++...+.+++..++.+++++.+..
T Consensus 91 ~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al~eA~~i~~~~ 170 (176)
T PF06506_consen 91 GLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIESGEESIRRALEEALRIARAR 170 (176)
T ss_dssp CHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHHHHHH
Confidence 22222 223455555542 223322 3355677778899999999999988876
Q ss_pred HH
Q 039776 850 RI 851 (922)
Q Consensus 850 ~~ 851 (922)
++
T Consensus 171 ~~ 172 (176)
T PF06506_consen 171 RR 172 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 223
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=67.32 E-value=11 Score=36.77 Aligned_cols=47 Identities=28% Similarity=0.544 Sum_probs=39.7
Q ss_pred CccHHHHHHHHhccCCceEEEeeecCCe-------------------EEEEecCCCCCHHHHHHHH
Q 039776 82 TSCSSTVEKTFQAIQGVQNAHVTLATEE-------------------AEVHYDPRILSCNQLLKAI 128 (922)
Q Consensus 82 ~~C~~~ie~~l~~~~Gv~~~~v~~~~~~-------------------~~v~~d~~~~~~~~i~~~i 128 (922)
++|-+-+|..+.+++||.++.+-++.+. +.|.|||..++.+++.+..
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f 75 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELF 75 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHH
Confidence 5677788999999999999988776654 7899999999999887755
No 224
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=66.28 E-value=9.4 Score=36.72 Aligned_cols=50 Identities=14% Similarity=0.337 Sum_probs=41.4
Q ss_pred hhhHHHHHhhhccCCCeeEEEecCCC-------------------ceEEEEecCCCCChhhHHHHHHhh
Q 039776 158 DHSVTMIESSLQALPGVLDIDLDPSI-------------------HKISISYKPAMTGPRNFIKMIEST 207 (922)
Q Consensus 158 ~~c~~~ie~~l~~~~GV~~~~vn~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~~ 207 (922)
..|-|..|..+.+++||.++++-+++ +.+.|.|||..++.++|++..=+.
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~ 75 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRI 75 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHh
Confidence 46899999999999999999996553 357899999999999998876554
No 225
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.26 E-value=30 Score=37.20 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=35.1
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCC-cccHH---HHHhCCceEEecC---C-cHHHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDG-INDSP---ALVAADVGMAIGA---G-TDIAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg-~nD~~---al~~A~vgia~~~---~-~~~~~~~ad~vl~~~ 830 (922)
+||..=.++++.... .|++|+++|-| .-=.| .|..++..+.+-+ . .......||+|+.--
T Consensus 141 cTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsav 210 (301)
T PRK14194 141 CTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAV 210 (301)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEec
Confidence 344433444444432 48999999997 33333 4556776666542 1 233456789998753
No 226
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=64.13 E-value=9.6 Score=35.26 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=35.5
Q ss_pred EEEEECCEEEEE---EEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHH
Q 039776 708 ILVSVDGELTGV---LSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAK 756 (922)
Q Consensus 708 l~v~~~~~~~G~---~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~ 756 (922)
+.+-.||+++-- -...+++.+++.++++++++.|++++++||++.....
T Consensus 4 i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 4 LVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred EEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 445566666411 0012568899999999999999999999999876644
No 227
>PRK13748 putative mercuric reductase; Provisional
Probab=64.08 E-value=21 Score=42.64 Aligned_cols=59 Identities=17% Similarity=0.358 Sum_probs=47.8
Q ss_pred eeeecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhC
Q 039776 149 HLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTA 208 (922)
Q Consensus 149 ~~~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g 208 (922)
.+.++||+|++|...++..+...+++....+++..+...+.|++. .....+...++..+
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g 61 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLG 61 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcC
Confidence 356889999999999999999999999999999999888888753 45555555566665
No 228
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=63.69 E-value=66 Score=34.07 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=56.9
Q ss_pred EcCCCcchhHHHHHHHHHHCCCEEE-EEcCCC-HHHHHHHHHHhC-CceEEecC--------ChhhHHHHHHHHHHcCCe
Q 039776 721 SISDPLKPGAHGVISILKSMQIRSI-LVTGDN-WGTAKSIASEVG-IETVIAEA--------KPEQKAEKVEELQASGYT 789 (922)
Q Consensus 721 ~~~d~~r~~~~~~i~~l~~~gi~~~-~~tgd~-~~~a~~ia~~~g-i~~~~~~~--------~p~~K~~~v~~l~~~g~~ 789 (922)
.+-|-+-++..+..+.+++.|+..+ +++-.. .+....+++... .-.+.++. .+++-.++++.+++.-..
T Consensus 124 iipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~ 203 (263)
T CHL00200 124 IIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNK 203 (263)
T ss_pred EecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCC
Confidence 4567777899999999999999865 666554 467778888775 43332221 234446677778776556
Q ss_pred EEEEcCCcccHHHH
Q 039776 790 VAMVGDGINDSPAL 803 (922)
Q Consensus 790 v~~vGDg~nD~~al 803 (922)
-.++|-|+|+....
T Consensus 204 Pi~vGFGI~~~e~~ 217 (263)
T CHL00200 204 PIILGFGISTSEQI 217 (263)
T ss_pred CEEEECCcCCHHHH
Confidence 67789999955443
No 229
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=62.27 E-value=10 Score=31.43 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCCeeEEEEEecCCeEEEEEcCCCCCHHHHHHHHHccCcccc
Q 039776 8 VSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKAT 58 (922)
Q Consensus 8 ~~i~~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~gy~~~ 58 (922)
..++-.|++-++|..+.+|-=.+.+.|.+|++..+.+++.+.+++.++++.
T Consensus 14 ~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi 64 (88)
T PF11491_consen 14 MVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVI 64 (88)
T ss_dssp HHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS
T ss_pred HHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhhe
Confidence 456677899999999999999999999999999999999999999998764
No 230
>PRK13748 putative mercuric reductase; Provisional
Probab=61.84 E-value=24 Score=42.19 Aligned_cols=64 Identities=27% Similarity=0.501 Sum_probs=50.6
Q ss_pred EEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCcccc
Q 039776 73 RIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIP 137 (922)
Q Consensus 73 ~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~ 137 (922)
.+.+++|+|++|..+++..+...+++.....++..+...+.+++. .....+...+++.||...+
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g~~~~~ 66 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLGYRATL 66 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcCCeeec
Confidence 356889999999999999999999988888888888877777643 3556666667778876544
No 231
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=60.79 E-value=41 Score=32.68 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=48.9
Q ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC--ChhhH---HHHHHHHHHcCCeEEEE-cCCcccHHHH
Q 039776 731 HGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA--KPEQK---AEKVEELQASGYTVAMV-GDGINDSPAL 803 (922)
Q Consensus 731 ~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~--~p~~K---~~~v~~l~~~g~~v~~v-GDg~nD~~al 803 (922)
.+.=++|++.|+.+.++.|+....-..+++++|+..+++.- .|.++ .++.+.+++.|-.+-.+ ++..-+...+
T Consensus 56 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~~~i 134 (165)
T PF00875_consen 56 ADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPPDDI 134 (165)
T ss_dssp HHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-HHHC
T ss_pred HHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEecccc
Confidence 44446677889999999999999999999999999998854 44443 34555666666555443 4445554443
No 232
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=60.67 E-value=36 Score=34.86 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=50.6
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHhCCceEE-----ecCChhhHHHHHHHHHHcCCeEEEEcCC
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNWGT----AKSIASEVGIETVI-----AEAKPEQKAEKVEELQASGYTVAMVGDG 796 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~~~----a~~ia~~~gi~~~~-----~~~~p~~K~~~v~~l~~~g~~v~~vGDg 796 (922)
.-||+.+.++..-+.|.++..+|.+.... +..-.++.|++.+- -.-....|..--+..++--+.|+.|||.
T Consensus 123 ~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k~~~iVm~vGDN 202 (274)
T COG2503 123 AVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDKKSKEVRRQAVEKDYKIVMLVGDN 202 (274)
T ss_pred cCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCCCcHHHHHHHHhhccceeeEecCc
Confidence 45788999999999999999998876655 44555667776321 1111122333333344455689999999
Q ss_pred cccHHHH
Q 039776 797 INDSPAL 803 (922)
Q Consensus 797 ~nD~~al 803 (922)
.+|-...
T Consensus 203 l~DF~d~ 209 (274)
T COG2503 203 LDDFGDN 209 (274)
T ss_pred hhhhcch
Confidence 9986443
No 233
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=60.66 E-value=1.2e+02 Score=37.79 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=52.8
Q ss_pred chHHHHHHHhccCceEEEEEECCEEEEEEEcC-----CCcchhHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhC
Q 039776 692 DTEEMLTETEGMAQTEILVSVDGELTGVLSIS-----DPLKPGAHGVISILKSM-QIRSILVTGDNWGTAKSIASEVG 763 (922)
Q Consensus 692 ~~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~-----d~~r~~~~~~i~~l~~~-gi~~~~~tgd~~~~a~~ia~~~g 763 (922)
+.+.....+....++.+++.+||++.....-. -.+.++..+++++|.+. +-.|+++||+............+
T Consensus 494 ~~~~~~~~y~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~ 571 (797)
T PLN03063 494 PEQDVIQQYSKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN 571 (797)
T ss_pred CHHHHHHHHHhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC
Confidence 34566677777777888999999998532211 12667889999999865 67899999999888777665433
No 234
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=60.18 E-value=19 Score=39.52 Aligned_cols=85 Identities=21% Similarity=0.213 Sum_probs=55.1
Q ss_pred EEEEcCCCcchhHHHHHHHHHHC----CCEEEEEcCCC---HH-HHHHHHHHhCCceEEecCChhh----HHHHHHHHHH
Q 039776 718 GVLSISDPLKPGAHGVISILKSM----QIRSILVTGDN---WG-TAKSIASEVGIETVIAEAKPEQ----KAEKVEELQA 785 (922)
Q Consensus 718 G~~~~~d~~r~~~~~~i~~l~~~----gi~~~~~tgd~---~~-~a~~ia~~~gi~~~~~~~~p~~----K~~~v~~l~~ 785 (922)
|++.-.+++-+++.++++.|++. |+++..+|... .. .+..+.+++|++ +.+++ ...+...+++
T Consensus 9 GvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~-----~~~~~i~~s~~~~~~ll~~ 83 (321)
T TIGR01456 9 GVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD-----VSPLQVIQSHSPYKSLVNK 83 (321)
T ss_pred CceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC-----CCHHHHHhhhHHHHHHHHH
Confidence 45567788999999999999998 99999999654 33 355666788874 22222 1122222323
Q ss_pred cCCeEEEEcCCcccHHHHHhCCc
Q 039776 786 SGYTVAMVGDGINDSPALVAADV 808 (922)
Q Consensus 786 ~g~~v~~vGDg~nD~~al~~A~v 808 (922)
.+.++.++|.+. -...++.+++
T Consensus 84 ~~~~v~viG~~~-~~~~l~~~G~ 105 (321)
T TIGR01456 84 YEKRILAVGTGS-VRGVAEGYGF 105 (321)
T ss_pred cCCceEEEeChH-HHHHHHHcCC
Confidence 344788998764 3455555543
No 235
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=60.09 E-value=12 Score=39.64 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=41.6
Q ss_pred hhhHHHHHhhhccCCCeeEEEecCCC-------------------ceEEEEecCCCCChhhHHHHHHh
Q 039776 158 DHSVTMIESSLQALPGVLDIDLDPSI-------------------HKISISYKPAMTGPRNFIKMIES 206 (922)
Q Consensus 158 ~~c~~~ie~~l~~~~GV~~~~vn~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~ 206 (922)
..|-|-+|..+.+++||.++++=+++ +.+.|.|||..++.++|++..=+
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~ 201 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFE 201 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHh
Confidence 46899999999999999999996553 34789999999999999887644
No 236
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=58.59 E-value=46 Score=23.14 Aligned_cols=42 Identities=31% Similarity=0.619 Sum_probs=33.9
Q ss_pred eecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecC
Q 039776 151 HLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKP 192 (922)
Q Consensus 151 ~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~ 192 (922)
.+.++.|..|...++..+...+++.....++......+.|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDP 44 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECC
Confidence 356888999999999988888998888888777776777654
No 237
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=57.79 E-value=41 Score=35.74 Aligned_cols=91 Identities=23% Similarity=0.334 Sum_probs=58.6
Q ss_pred EEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH---HhCCceEEecCChhhHHHHHHHHHH---cCCeEE
Q 039776 718 GVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIAS---EVGIETVIAEAKPEQKAEKVEELQA---SGYTVA 791 (922)
Q Consensus 718 G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~---~~gi~~~~~~~~p~~K~~~v~~l~~---~g~~v~ 791 (922)
|++-..+.+-|++.++++.|+++|-++.++|.....+-+..++ ++|+..+-.+--..--..+...|++ .+++|.
T Consensus 31 GVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vy 110 (306)
T KOG2882|consen 31 GVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVY 110 (306)
T ss_pred cceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHHHHHHHhCcCCCeEE
Confidence 4556688899999999999999999999999988777766655 4676542221111112334444433 246677
Q ss_pred EE-cCCcccHHHHHhCCceE
Q 039776 792 MV-GDGINDSPALVAADVGM 810 (922)
Q Consensus 792 ~v-GDg~nD~~al~~A~vgi 810 (922)
.+ ++|+++ -|+.|++-.
T Consensus 111 vig~~gi~~--eL~~aG~~~ 128 (306)
T KOG2882|consen 111 VIGEEGIRE--ELDEAGFEY 128 (306)
T ss_pred EecchhhhH--HHHHcCcee
Confidence 66 456665 456666433
No 238
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=56.19 E-value=25 Score=33.80 Aligned_cols=48 Identities=27% Similarity=0.471 Sum_probs=38.2
Q ss_pred CccHHHHHHHHhccCCceEEEeeecC--------------CeEEEEecCCCCCHHHHHHHHH
Q 039776 82 TSCSSTVEKTFQAIQGVQNAHVTLAT--------------EEAEVHYDPRILSCNQLLKAIE 129 (922)
Q Consensus 82 ~~C~~~ie~~l~~~~Gv~~~~v~~~~--------------~~~~v~~d~~~~~~~~i~~~i~ 129 (922)
++|-+-+|..+.+++||.++.+-+.. +.+.|.|||..++.+++.+..=
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~ 69 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLF 69 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHH
Confidence 46777788999999999999876544 2378889999999988877553
No 239
>PLN02645 phosphoglycolate phosphatase
Probab=56.06 E-value=23 Score=38.58 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=37.7
Q ss_pred HHHHHHHcCCeEEEEcCCc-ccHHHHHhCC---ceEEecCCcHH-HH-----HhcCEEEeCCChhhHHHHH
Q 039776 779 KVEELQASGYTVAMVGDGI-NDSPALVAAD---VGMAIGAGTDI-AI-----EAADIVLMKSNLEDEITAI 839 (922)
Q Consensus 779 ~v~~l~~~g~~v~~vGDg~-nD~~al~~A~---vgia~~~~~~~-~~-----~~ad~vl~~~~~~~l~~~i 839 (922)
+++.+.-..+.++||||.. +|+.+-+.|+ ++|..|..+.. .. ..+|.++ +++..+..++
T Consensus 239 a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~--~~~~~l~~~~ 307 (311)
T PLN02645 239 LANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYT--SKISDFLTLK 307 (311)
T ss_pred HHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEE--CCHHHHHHHh
Confidence 3334433457899999997 9999999999 44444533322 11 2467777 5676666543
No 240
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.73 E-value=33 Score=29.09 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=40.6
Q ss_pred HHHHhhcCCCeeEEEE-----EecCCeEEEEEcCCCCCHHHHHHHHHccCccccc
Q 039776 10 IEKAIKRLPGIHDAVV-----DVLNNRAQVLFYPFFVNEETILEAIEGVGFKATL 59 (922)
Q Consensus 10 i~~~l~~~~gV~~v~v-----~~~~~~~~v~~~~~~~~~~~i~~~v~~~gy~~~~ 59 (922)
+-+.|++++||+.+++ +..+....++......+-+++.+.+++.|-.+.+
T Consensus 24 ~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHS 78 (97)
T COG1888 24 LALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHS 78 (97)
T ss_pred HHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeee
Confidence 4566888888887654 6678888888888889999999999999976543
No 241
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=52.89 E-value=24 Score=35.74 Aligned_cols=47 Identities=34% Similarity=0.521 Sum_probs=38.6
Q ss_pred CccHHHHHHHHhccCCceEEEeeecC-------------------CeEEEEecCCCCCHHHHHHHH
Q 039776 82 TSCSSTVEKTFQAIQGVQNAHVTLAT-------------------EEAEVHYDPRILSCNQLLKAI 128 (922)
Q Consensus 82 ~~C~~~ie~~l~~~~Gv~~~~v~~~~-------------------~~~~v~~d~~~~~~~~i~~~i 128 (922)
++|-+-+|..+.+++||.++.+-+.. +.+.|.|||..++.+++.+..
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~F 117 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVF 117 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHH
Confidence 56777788899999999999987763 347889999999999887765
No 242
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=51.28 E-value=2.3e+02 Score=36.26 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=77.1
Q ss_pred eEEecCCCcCCCCEEEEcCCCeeeceEEEEeccee-eecccccCCCcccccCCCCeeecCccccc----------ceEEE
Q 039776 397 EEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGKSY-VNESMITGEAWPVAKREGDTVTGGTLNEN----------GVLHI 465 (922)
Q Consensus 397 ~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl~g~~~-vdes~lTGEs~pv~k~~g~~v~~Gs~~~~----------g~~~~ 465 (922)
...+...|.+|.|.++++ |+..-+|=-.+.|++. ++-. .|+..- -..|..+..|+...- |.+.-
T Consensus 189 iV~l~~Gd~IPaD~~li~-g~~l~VdES~LTGES~pv~K~--~~~~n~--v~~GT~v~~G~~~~iV~~tG~~T~~gki~~ 263 (941)
T TIGR01517 189 IVSLSTGDVVPADGVFIS-GLSLEIDESSITGESDPIKKG--APKDSF--LLSGTVVNEGSGRMLVTAVGVNSFGGKLMM 263 (941)
T ss_pred EEEECCCCEecccEEEEE-cCcEEEEecccCCCCCccccc--CCCCce--EEeCCeEEeeEEEEEEEEeCCCcHHHHHHH
Confidence 457788899999999885 4455566666667653 2211 122211 245777766653211 11111
Q ss_pred EEEEecCccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCC--CCCcccCCccchHHHH
Q 039776 466 KATRVGSESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHS--YPESWIPSSMDSFELA 543 (922)
Q Consensus 466 ~v~~~g~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 543 (922)
.+......|.+. ..+++..+.+..+.+.+.++..++.++.|++...... ....+..+....+..+
T Consensus 264 ~~~~~~~~t~l~-------------~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 330 (941)
T TIGR01517 264 ELRAEGEDTPLQ-------------EKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIA 330 (941)
T ss_pred hhccCCCCCcHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHH
Confidence 111111222222 1234444555544443333333333222222110000 0000011112356677
Q ss_pred HHHHhheeeeeccccchhhHHHHHHHHHH
Q 039776 544 LQFGISVMVIACPCALGLATPTAVMVGTG 572 (922)
Q Consensus 544 ~~~~i~vl~~~~P~~l~l~~~~~~~~~~~ 572 (922)
+...++..-.+.|.++++++..+.....+
T Consensus 331 l~llv~~iP~~Lp~~vti~l~~~~~~mak 359 (941)
T TIGR01517 331 VTIVVVAVPEGLPLAVTIALAYSMKKMMK 359 (941)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHHHHHHh
Confidence 77788888888889888888888655444
No 243
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=51.26 E-value=31 Score=28.71 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=31.5
Q ss_pred chhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhC
Q 039776 157 TDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTA 208 (922)
Q Consensus 157 c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g 208 (922)
.+-.+..++-.|+..++|-++=+|.-.....|.||+.+.+.+.+++.++...
T Consensus 9 t~eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~k 60 (88)
T PF11491_consen 9 TPEEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFK 60 (88)
T ss_dssp TTTTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTT
T ss_pred CHHHHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcC
Confidence 4455677788899999999999999999999999999999999999999854
No 244
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=51.15 E-value=23 Score=35.05 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=37.6
Q ss_pred CccHHHHHHHHhccCCceEEEeeecCCe-------------------EEEEecCCCCCHHHHHHHH
Q 039776 82 TSCSSTVEKTFQAIQGVQNAHVTLATEE-------------------AEVHYDPRILSCNQLLKAI 128 (922)
Q Consensus 82 ~~C~~~ie~~l~~~~Gv~~~~v~~~~~~-------------------~~v~~d~~~~~~~~i~~~i 128 (922)
++|-+-+|..+.+++||.++.+-+..+. +.|.|||..++.+++.+..
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~F 80 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIF 80 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHH
Confidence 4555667888899999999988776553 7889999999999887755
No 245
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=50.71 E-value=1.2e+02 Score=38.88 Aligned_cols=118 Identities=15% Similarity=0.224 Sum_probs=74.8
Q ss_pred HHHHHHHhccCCceEEEeeecCC--eEEEEecCCCCCHH----HHHHHHHhcCC--ccc-------ccccccccccceee
Q 039776 86 STVEKTFQAIQGVQNAHVTLATE--EAEVHYDPRILSCN----QLLKAIEDTGF--EAI-------PISTGEDIVSKIHL 150 (922)
Q Consensus 86 ~~ie~~l~~~~Gv~~~~v~~~~~--~~~v~~d~~~~~~~----~i~~~i~~~G~--~~~-------~~~~~~~~~~~~~~ 150 (922)
..+|+++++++|+.+.+..-..+ ..+++++.+. +++ ++.+.+..... ... ..+.++. --..+
T Consensus 64 ~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~-d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~~~~~~--~i~~~ 140 (1009)
T COG0841 64 QPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGT-DPDTAAVQVQNKIQQAESRLPSGVQQPGVTVEKSSSN--PLLIL 140 (1009)
T ss_pred HHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCC-ChHHHHHHHHHHHHHHHhcCCCccCCCceEeccCCCc--eEEEE
Confidence 56999999999999887654444 4566676654 444 45555543331 110 0111111 12233
Q ss_pred eecC--CCc---hh-hHHHHHhhhccCCCeeEEEecCC-CceEEEEecCCC-----CChhhHHHHHHh
Q 039776 151 HLDG--LYT---DH-SVTMIESSLQALPGVLDIDLDPS-IHKISISYKPAM-----TGPRNFIKMIES 206 (922)
Q Consensus 151 ~i~g--m~c---~~-c~~~ie~~l~~~~GV~~~~vn~~-~~~~~v~~~~~~-----~~~~~i~~~i~~ 206 (922)
.+.+ +.- .. -...+.+.|+++|||.++.+.-. ...+.|..||.+ ++++++.++++.
T Consensus 141 al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~ 208 (1009)
T COG0841 141 ALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRA 208 (1009)
T ss_pred EEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 3333 431 12 24668999999999999999987 667789999975 578899988875
No 246
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=50.29 E-value=35 Score=29.48 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=39.2
Q ss_pred HHHHHhhcCCCeeEEEE-----EecCCeEEEEEcCCCCCHHHHHHHHHccCcccc
Q 039776 9 SIEKAIKRLPGIHDAVV-----DVLNNRAQVLFYPFFVNEETILEAIEGVGFKAT 58 (922)
Q Consensus 9 ~i~~~l~~~~gV~~v~v-----~~~~~~~~v~~~~~~~~~~~i~~~v~~~gy~~~ 58 (922)
.+-+.|.+++||..+++ +..+....++.....++.+++.+++++.|-.+.
T Consensus 21 e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IH 75 (95)
T PF02680_consen 21 ELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIH 75 (95)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEE
Confidence 35577899999988764 667888888888888999999999999996654
No 247
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=49.99 E-value=1.2e+02 Score=28.43 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=45.9
Q ss_pred CCEEEEEEEcCCCcchhHHHHHHHHHHCCC-EE-EEEcCCC------HHHHHHHHHHhCCceEEecCCh
Q 039776 713 DGELTGVLSISDPLKPGAHGVISILKSMQI-RS-ILVTGDN------WGTAKSIASEVGIETVIAEAKP 773 (922)
Q Consensus 713 ~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi-~~-~~~tgd~------~~~a~~ia~~~gi~~~~~~~~p 773 (922)
+-.++|+-.+.-...+.+++.++.|++.|. .+ +++-|.. .......++++|++.+|..-+|
T Consensus 54 ~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~ 122 (137)
T PRK02261 54 DADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTD 122 (137)
T ss_pred CCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCC
Confidence 346788888888889999999999999966 23 4555543 3455678899999999985544
No 248
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=49.32 E-value=1.2e+02 Score=28.34 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=46.8
Q ss_pred CCEEEEEEEcCCCcchhHHHHHHHHHHCCCE--EEEEcCCC---HHH---HHHHHHHhCCceEEecCChhhHHHHHHHHH
Q 039776 713 DGELTGVLSISDPLKPGAHGVISILKSMQIR--SILVTGDN---WGT---AKSIASEVGIETVIAEAKPEQKAEKVEELQ 784 (922)
Q Consensus 713 ~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~--~~~~tgd~---~~~---a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~ 784 (922)
+-.++|+-.+.-.--+..+++++.|+++|++ .+++-|-. ... ...-++++|++.+|..-+|- .+++..++
T Consensus 52 ~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~--~~iv~~l~ 129 (134)
T TIGR01501 52 KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPP--EVVIADLK 129 (134)
T ss_pred CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCH--HHHHHHHH
Confidence 3456777777777778899999999999973 45666632 111 24457899999999866543 33444443
No 249
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=49.05 E-value=1.1e+02 Score=32.09 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=69.2
Q ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHH----HHHHHhCCceEEe---cCChhhHHHHHHHHHHcCCeEEEEcCCcccHH--
Q 039776 731 HGVISILKSMQIRSILVTGDNWGTAK----SIASEVGIETVIA---EAKPEQKAEKVEELQASGYTVAMVGDGINDSP-- 801 (922)
Q Consensus 731 ~~~i~~l~~~gi~~~~~tgd~~~~a~----~ia~~~gi~~~~~---~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~-- 801 (922)
.+.++...+.|.++.++ |..+.++. .+.++.|+..+.. =..|++..++++.+.+.+-.+++||=|.-=-+
T Consensus 95 ~~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~PkQE~~ 173 (243)
T PRK03692 95 EALMARAGKEGTPVFLV-GGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSPKQEIF 173 (243)
T ss_pred HHHHHHHHhcCCeEEEE-CCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH
Confidence 55666677788899888 55555433 3334446553211 23477777899999999999999999953211
Q ss_pred -----HHHhCCceEEecCCcHH---HHHhcCEEEeCCChhhHHHHHHHHHHHHH
Q 039776 802 -----ALVAADVGMAIGAGTDI---AIEAADIVLMKSNLEDEITAIDLSRKTFS 847 (922)
Q Consensus 802 -----al~~A~vgia~~~~~~~---~~~~ad~vl~~~~~~~l~~~i~~~r~~~~ 847 (922)
..-...+.+++|.+=|. ....|.-.+..-+++.+..++.+=|+..+
T Consensus 174 ~~~~~~~~~~~v~~gvGg~fD~~aG~~~RAP~w~~~~gLEWlyRl~~EP~R~~R 227 (243)
T PRK03692 174 MRDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRIRR 227 (243)
T ss_pred HHHHHHhCCCCEEEEeCeEEEEecCCcCcCcHHHHHhChHHHHHhHhCcHHHHH
Confidence 11123455555531110 01223333344578888889988887543
No 250
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=48.87 E-value=37 Score=34.61 Aligned_cols=87 Identities=16% Similarity=0.273 Sum_probs=50.6
Q ss_pred CCceEEEeeecCCeEEEEecCCCCCHHHHHH---HHHhcCCccccccc-----ccc------cccceeeeecCCCchhhH
Q 039776 96 QGVQNAHVTLATEEAEVHYDPRILSCNQLLK---AIEDTGFEAIPIST-----GED------IVSKIHLHLDGLYTDHSV 161 (922)
Q Consensus 96 ~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~---~i~~~G~~~~~~~~-----~~~------~~~~~~~~i~gm~c~~c~ 161 (922)
+||...+..-.++...+.-+ .+++.. .+...||..+.... ..+ ..++.|+. -.=.
T Consensus 43 ~gI~A~K~~~~~g~~~l~Ve-----~~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR~~------~~~e 111 (246)
T COG4669 43 HGINAEKKADKDGGTSLLVE-----ESDFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKARLN------YAKE 111 (246)
T ss_pred cCCcceeeccCCCceEEEEc-----HHHHHHHHHHHHhcCCCCCCCCcHHHhCCcccccCCcHHHHHHHH------HHHH
Confidence 67777776666666666533 344544 44567886542211 000 01222321 1235
Q ss_pred HHHHhhhccCCCeeEEEecCC--------------CceEEEEecCC
Q 039776 162 TMIESSLQALPGVLDIDLDPS--------------IHKISISYKPA 193 (922)
Q Consensus 162 ~~ie~~l~~~~GV~~~~vn~~--------------~~~~~v~~~~~ 193 (922)
+.+|+.|+.++||.+++|+.. +-++.|.|.|+
T Consensus 112 Q~le~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~ 157 (246)
T COG4669 112 QQLEQTLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPD 157 (246)
T ss_pred HHHHHHHHhcCceEEEEEEEEcCCCCccCCCCCCceeEEEEEecCC
Confidence 789999999999988887532 34567788765
No 251
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=48.01 E-value=60 Score=32.85 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=60.5
Q ss_pred EEEEcCCCcchh--HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce-----------------EEecCChhhHHH
Q 039776 718 GVLSISDPLKPG--AHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET-----------------VIAEAKPEQKAE 778 (922)
Q Consensus 718 G~~~~~d~~r~~--~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~-----------------~~~~~~p~~K~~ 778 (922)
|.+-++| ++|+ .++.+-.|++.+ .|+.|.-...-|.++.+.+||.. +.|..+|+-=..
T Consensus 92 ~~LPlq~-LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~ 168 (244)
T KOG3109|consen 92 GRLPLQD-LKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEK 168 (244)
T ss_pred ccCcHhh-cCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHH
Confidence 3445566 7766 567777777665 79999999999999999999963 223333332223
Q ss_pred HHHHHHHc-CCeEEEEcCCcccHHHHHhCCc
Q 039776 779 KVEELQAS-GYTVAMVGDGINDSPALVAADV 808 (922)
Q Consensus 779 ~v~~l~~~-g~~v~~vGDg~nD~~al~~A~v 808 (922)
.++...-. .+++.++-|..+.+.+-+.-+.
T Consensus 169 a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl 199 (244)
T KOG3109|consen 169 AMKVAGIDSPRNTYFFDDSERNIQTAKEVGL 199 (244)
T ss_pred HHHHhCCCCcCceEEEcCchhhHHHHHhccc
Confidence 33333323 5689999999999988877663
No 252
>PLN02591 tryptophan synthase
Probab=47.96 E-value=1.9e+02 Score=30.34 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=53.5
Q ss_pred CCcchhHHHHHHHHHHCCCEEE-EEcCCC-HHHHHHHHHHh-CCceEEecC--------ChhhHHHHHHHHHHcCCeEEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSI-LVTGDN-WGTAKSIASEV-GIETVIAEA--------KPEQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~-~~tgd~-~~~a~~ia~~~-gi~~~~~~~--------~p~~K~~~v~~l~~~g~~v~~ 792 (922)
|-+-++..+..+.+++.|+..+ ++|-.. .+..+.+++.. |.-.+.++. .|++-.+.++.+++....-.+
T Consensus 114 DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~ 193 (250)
T PLN02591 114 DLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVA 193 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceE
Confidence 5555889999999999999875 565555 35677888776 333222221 245556778888887667778
Q ss_pred EcCCcccH
Q 039776 793 VGDGINDS 800 (922)
Q Consensus 793 vGDg~nD~ 800 (922)
+|-|+++.
T Consensus 194 vGFGI~~~ 201 (250)
T PLN02591 194 VGFGISKP 201 (250)
T ss_pred EeCCCCCH
Confidence 89999944
No 253
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.94 E-value=1.1e+02 Score=24.85 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=43.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCccccccCCccccccceEEEEEEcCCCCCccHHHHHHHHhccCCceEEEe
Q 039776 32 AQVLFYPFFVNEETILEAIEGVGFKATLVPGETIEKSTQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHV 103 (922)
Q Consensus 32 ~~v~~~~~~~~~~~i~~~v~~~gy~~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v 103 (922)
..+..+...-.+.++.+.+.+.|-.+................+.++--.=...-..+.++|++++||.++.+
T Consensus 3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 445554444457889999999887765443321111223345555432222255788899999999998764
No 254
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=47.79 E-value=61 Score=26.18 Aligned_cols=56 Identities=18% Similarity=0.344 Sum_probs=41.0
Q ss_pred EEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCccccc
Q 039776 73 RIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIPI 138 (922)
Q Consensus 73 ~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~ 138 (922)
++.+.|+.|+...-.+.+++++++.- +.+.+..|.+. ..+.+....+..||+....
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~-~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPA-AVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTT-HHHHHHHHHHHHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCcc-HHHHHHHHHHHCCCEEEEE
Confidence 56788999999999999999997432 34555555443 5788999999999975443
No 255
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=47.75 E-value=52 Score=32.78 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=31.3
Q ss_pred eEEEEecCCCCChhhHHHHHHhhCCCCcccccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039776 185 KISISYKPAMTGPRNFIKMIESTASGHFKARIFPEGEGREAQKQAEIKKYYRSFLWSLAFTIPVFLTSMVFMYIP 259 (922)
Q Consensus 185 ~~~v~~~~~~~~~~~i~~~i~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~la~~l~l~~~~l~~~~ 259 (922)
.+.|.|-+..++++.+...++... . +.....++..+..++++|+++|.+++...|
T Consensus 104 ~i~v~yP~~~~~~~~v~~~L~~l~---------------~-----~~~~~H~k~~~~~~~~~PlT~P~~LiPviP 158 (187)
T PF10173_consen 104 PIEVYYPGSVISPREVLRQLRKLA---------------T-----ERQPYHRKRMIWCILGIPLTLPFALIPVIP 158 (187)
T ss_pred ceeEecCcccCCHHHHHHHHHHHH---------------H-----HhHHHHHHHHHHHHHhhhhhcceeeecCCC
Confidence 677777656677777777776542 0 111122333444566788888766654433
No 256
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.95 E-value=1e+02 Score=32.97 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=34.7
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcC-CcccHH---HHHhCCceEEec-C-Cc--HHHHHhcCEEEeC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGD-GINDSP---ALVAADVGMAIG-A-GT--DIAIEAADIVLMK 829 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGD-g~nD~~---al~~A~vgia~~-~-~~--~~~~~~ad~vl~~ 829 (922)
+||..=.++++.... .|+++++||. |.-=.| +|..++.-+.+. + .. ......||+++.-
T Consensus 140 cTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 140 CTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVA 208 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEe
Confidence 444444444444432 4899999999 444444 455666665554 2 22 2345679999875
No 257
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.57 E-value=1.4e+02 Score=31.74 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=36.8
Q ss_pred cCChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCCceEEecC--CcH--HHHHhcCEEEeCCC
Q 039776 770 EAKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAADVGMAIGA--GTD--IAIEAADIVLMKSN 831 (922)
Q Consensus 770 ~~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~vgia~~~--~~~--~~~~~ad~vl~~~~ 831 (922)
-+||..=.++++.... +|++|+.+|.+.. =+.+|.+.+.-|.+.. ..+ .....||+++..-.
T Consensus 139 PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvG 210 (278)
T PRK14172 139 PCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIG 210 (278)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCC
Confidence 3445444555555432 5899999999854 2335555665555553 222 23467999988543
No 258
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=46.33 E-value=30 Score=33.37 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=38.5
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce-EE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET-VI 768 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~-~~ 768 (922)
.+||++.+.+++|++. +++.+.|......|..+.+.++... +|
T Consensus 58 ~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F 101 (156)
T TIGR02250 58 KLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYF 101 (156)
T ss_pred EECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCee
Confidence 5899999999999955 9999999999999999999999873 44
No 259
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=45.71 E-value=58 Score=31.39 Aligned_cols=48 Identities=31% Similarity=0.513 Sum_probs=38.0
Q ss_pred CccHHHHHHHHhccCCceEEEeeecCC-------------------eEEEEecCCCCCHHHHHHHHH
Q 039776 82 TSCSSTVEKTFQAIQGVQNAHVTLATE-------------------EAEVHYDPRILSCNQLLKAIE 129 (922)
Q Consensus 82 ~~C~~~ie~~l~~~~Gv~~~~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i~ 129 (922)
++|-+.+|..+.+++||.++.+-+..+ .+.|.|||..++.+++.+..=
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~ 73 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFF 73 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHH
Confidence 478888999999999999999877554 467788998888888777653
No 260
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.69 E-value=1.3e+02 Score=32.13 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=35.0
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCCceEEec--CCcH--HHHHhcCEEEeCCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAADVGMAIG--AGTD--IAIEAADIVLMKSN 831 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~~--~~~~~ad~vl~~~~ 831 (922)
+||..=.++++.... +|++|+.+|.+.. =+.+|...+.-|.+. ...+ .....||+++..-.
T Consensus 138 cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG 208 (282)
T PRK14169 138 STPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVG 208 (282)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccC
Confidence 344444445554432 5899999999844 233455555555554 2222 34467899987543
No 261
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.66 E-value=1.5e+02 Score=31.67 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=33.1
Q ss_pred ChhhHHHHHHHHH--HcCCeEEEEcCCcc----cHHHHHhCCceEEec--CCcH--HHHHhcCEEEeCCC
Q 039776 772 KPEQKAEKVEELQ--ASGYTVAMVGDGIN----DSPALVAADVGMAIG--AGTD--IAIEAADIVLMKSN 831 (922)
Q Consensus 772 ~p~~K~~~v~~l~--~~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~~--~~~~~ad~vl~~~~ 831 (922)
||..=.++++... -.|++|+.+|.+.. =+.+|...+.-+.+. ...+ .....||+++..-.
T Consensus 140 Tp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG 209 (284)
T PRK14170 140 TPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATG 209 (284)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecC
Confidence 4433334444432 24889999999844 223444455444443 2222 34467899987543
No 262
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=44.71 E-value=37 Score=32.66 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=41.6
Q ss_pred hhhHHHHHhhhccCCCeeEEEecCCC-------------------ceEEEEecCCCCChhhHHHHHHhh
Q 039776 158 DHSVTMIESSLQALPGVLDIDLDPSI-------------------HKISISYKPAMTGPRNFIKMIEST 207 (922)
Q Consensus 158 ~~c~~~ie~~l~~~~GV~~~~vn~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~~ 207 (922)
+.|-|..|.+..++|||...+|-++. +.+.|.|||..++-++|++..=..
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~~ 99 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWSR 99 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHHc
Confidence 46899999999999999999986653 356899999999999998876543
No 263
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.47 E-value=91 Score=33.32 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=34.3
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCC--ceEEecCCcH--HHHHhcCEEEeCCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAAD--VGMAIGAGTD--IAIEAADIVLMKSN 831 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~--vgia~~~~~~--~~~~~ad~vl~~~~ 831 (922)
+||..=.++++..+. .|++|+.+|.|.. =+.+|...+ |-+......+ .....||+++..-.
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG 209 (285)
T PRK14191 139 ATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVG 209 (285)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecC
Confidence 444444445554433 4899999999922 223444444 4444333333 24578999988643
No 264
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.77 E-value=87 Score=28.66 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=43.4
Q ss_pred CEEEEEEEcCCCcchhHHHHHHHHHHCCC-EE-EEEcCCCHHHHHHHHHHhCCceEEecCCh
Q 039776 714 GELTGVLSISDPLKPGAHGVISILKSMQI-RS-ILVTGDNWGTAKSIASEVGIETVIAEAKP 773 (922)
Q Consensus 714 ~~~~G~~~~~d~~r~~~~~~i~~l~~~gi-~~-~~~tgd~~~~a~~ia~~~gi~~~~~~~~p 773 (922)
-.++++-.......+.+++.++.|+++|. ++ +++-|.....-..-.++.|++.++..=++
T Consensus 51 ~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 51 VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCC
Confidence 34566666677788889999999999977 44 56666655544566778999987764433
No 265
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.92 E-value=1.3e+02 Score=32.40 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=33.7
Q ss_pred CChhhHHHHHHHHH--HcCCeEEEEcCC-cccH---HHHHhCCceEEecC----CcHHHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQ--ASGYTVAMVGDG-INDS---PALVAADVGMAIGA----GTDIAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~--~~g~~v~~vGDg-~nD~---~al~~A~vgia~~~----~~~~~~~~ad~vl~~~ 830 (922)
+||..=.++++... -+|++|+++|.+ .-=. ..|..++..+.+-+ ..+.+...||+|+..-
T Consensus 140 cTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsav 209 (296)
T PRK14188 140 CTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAV 209 (296)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEec
Confidence 33433334444432 258999999954 3222 34556777666552 2234456789988753
No 266
>PF15584 Imm44: Immunity protein 44
Probab=42.88 E-value=11 Score=32.08 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCeeeceEEE
Q 039776 407 RNDVIKIIPGAKVASDGYV 425 (922)
Q Consensus 407 ~GDiv~v~~G~~iPaD~~v 425 (922)
+.+-.+|+.|++||||||=
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4556788999999999984
No 267
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=40.85 E-value=1.6e+02 Score=30.65 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=49.8
Q ss_pred CCcchhHHHHHHHHHHCCCEEEE-EcCCC-HHHHHHHHH-HhCCceEEec------CC--hhhHHHHHHHHHHcCCeEEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSIL-VTGDN-WGTAKSIAS-EVGIETVIAE------AK--PEQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~~-~tgd~-~~~a~~ia~-~~gi~~~~~~------~~--p~~K~~~v~~l~~~g~~v~~ 792 (922)
|-.-++..+.++.+|+.|++.++ ++-.. .+..+.+++ ..|...+.+. -+ +.+-.+.++.+++....-.+
T Consensus 112 Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~ 191 (242)
T cd04724 112 DLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIA 191 (242)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEE
Confidence 44456888999999999998765 55433 455667776 5665433321 11 23344667777766556778
Q ss_pred EcCCcccH
Q 039776 793 VGDGINDS 800 (922)
Q Consensus 793 vGDg~nD~ 800 (922)
+|-|+|+.
T Consensus 192 vggGI~~~ 199 (242)
T cd04724 192 VGFGISTP 199 (242)
T ss_pred EEccCCCH
Confidence 89999954
No 268
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.79 E-value=2.5e+02 Score=29.63 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=50.8
Q ss_pred cCCCcchhHHHHHHHHHHCCCEEE-EEcCCC-HHHHHHHHHHhC-CceEEec--C------ChhhHHHHHHHHHHcCCeE
Q 039776 722 ISDPLKPGAHGVISILKSMQIRSI-LVTGDN-WGTAKSIASEVG-IETVIAE--A------KPEQKAEKVEELQASGYTV 790 (922)
Q Consensus 722 ~~d~~r~~~~~~i~~l~~~gi~~~-~~tgd~-~~~a~~ia~~~g-i~~~~~~--~------~p~~K~~~v~~l~~~g~~v 790 (922)
+-|.+-++..+.++.+++.|++.+ +++-.. .+....+++... ...+.+. . .+.+-.+.++.+++....-
T Consensus 121 ipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~p 200 (256)
T TIGR00262 121 VADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKP 200 (256)
T ss_pred ECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCC
Confidence 346666889999999999999965 666555 345667777764 4333221 1 1223456667776653344
Q ss_pred EEEcCCcccH
Q 039776 791 AMVGDGINDS 800 (922)
Q Consensus 791 ~~vGDg~nD~ 800 (922)
.++|-|+++.
T Consensus 201 i~vgfGI~~~ 210 (256)
T TIGR00262 201 VLVGFGISKP 210 (256)
T ss_pred EEEeCCCCCH
Confidence 6789999843
No 269
>PLN02423 phosphomannomutase
Probab=40.73 E-value=59 Score=34.04 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=36.3
Q ss_pred EEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHH
Q 039776 707 EILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAK 756 (922)
Q Consensus 707 ~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~ 756 (922)
.+.+-.||+++- =..++.++..++|++|++. ++++++||+......
T Consensus 9 i~~~D~DGTLl~---~~~~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~ 54 (245)
T PLN02423 9 IALFDVDGTLTA---PRKEATPEMLEFMKELRKV-VTVGVVGGSDLSKIS 54 (245)
T ss_pred EEEEeccCCCcC---CCCcCCHHHHHHHHHHHhC-CEEEEECCcCHHHHH
Confidence 444677888872 2446889999999999977 999999999776654
No 270
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.76 E-value=1.5e+02 Score=31.65 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=28.8
Q ss_pred cCCeEEEEcCCcc----cHHHHHhCCceEEecC--CcH--HHHHhcCEEEeCCC
Q 039776 786 SGYTVAMVGDGIN----DSPALVAADVGMAIGA--GTD--IAIEAADIVLMKSN 831 (922)
Q Consensus 786 ~g~~v~~vGDg~n----D~~al~~A~vgia~~~--~~~--~~~~~ad~vl~~~~ 831 (922)
.|++|+.+|.|.. =+.+|...+.-+.+.. ..+ .....||+++..-.
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG 210 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVG 210 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCC
Confidence 4889999999855 2234455555554442 222 34578999998644
No 271
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.64 E-value=1.2e+02 Score=32.37 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=33.7
Q ss_pred CChhhHHHHHHHHH--HcCCeEEEEcCCcc----cHHHHHhCC--ceEEecCCcH--HHHHhcCEEEeCCC
Q 039776 771 AKPEQKAEKVEELQ--ASGYTVAMVGDGIN----DSPALVAAD--VGMAIGAGTD--IAIEAADIVLMKSN 831 (922)
Q Consensus 771 ~~p~~K~~~v~~l~--~~g~~v~~vGDg~n----D~~al~~A~--vgia~~~~~~--~~~~~ad~vl~~~~ 831 (922)
+||..=.++++... -+|++|+.+|.|.. =+.+|...+ |-+.-....+ .....||+++..-.
T Consensus 140 cTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 140 CTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVG 210 (286)
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCC
Confidence 34444444444442 24899999999851 122444444 4444433322 34567999987643
No 272
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=39.03 E-value=1.5e+02 Score=34.75 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=41.9
Q ss_pred hhhHHHHHhhhccCCCeeEEEecCCC------------------ceEEEEecCCCCChhhHHHHHHhh
Q 039776 158 DHSVTMIESSLQALPGVLDIDLDPSI------------------HKISISYKPAMTGPRNFIKMIEST 207 (922)
Q Consensus 158 ~~c~~~ie~~l~~~~GV~~~~vn~~~------------------~~~~v~~~~~~~~~~~i~~~i~~~ 207 (922)
..|-|-+|..+++++||.++++-+++ +.+.|.|||..++.++|++..=..
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~~~ 272 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYFRV 272 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHHHh
Confidence 46999999999999999999986554 347899999999999998876543
No 273
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=38.66 E-value=5.9e+02 Score=32.88 Aligned_cols=198 Identities=11% Similarity=0.032 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcc-----CCCeEEEEeec--CCCCcceeEEecCCCcCCCCEEEEcCCCeeece
Q 039776 350 LISFILLGKYLEVLAKGKTSEAIAKLLDL-----APEAATLLTMD--EEGNVISEEEIDSRLIQRNDVIKIIPGAKVASD 422 (922)
Q Consensus 350 l~~~~~~~~~~e~~~~~~~~~~l~~l~~~-----~~~~~~v~r~~--~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD 422 (922)
++++..+-.+++.+..+++.+.++++... ...+...+... .-|. ...+...|..|.|.++++... +-+|
T Consensus 113 vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GD---iv~l~~Gd~IPaD~~il~~~~-l~Vd 188 (997)
T TIGR01106 113 VVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGD---LVEVKGGDRIPADLRIISAQG-CKVD 188 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCC---EEEECCCCEEeeeEEEEEccC-cEEE
Confidence 44455555566666777788878876432 12222222110 1243 457788889999999987653 4566
Q ss_pred EEEEeccee-eecccccCCCcccc----cCCCCeeecCcccccceEEEEEEEecCccHHHHHHHHHHHhhc-cCChhHHH
Q 039776 423 GYVLWGKSY-VNESMITGEAWPVA----KREGDTVTGGTLNENGVLHIKATRVGSESALAQIVRLVESAQM-AKAPVQKF 496 (922)
Q Consensus 423 ~~vl~g~~~-vdes~lTGEs~pv~----k~~g~~v~~Gs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~-~~~~l~~~ 496 (922)
=-.+.|++. |.-..-..+..|.. -..|..+..|+...-=.-++.-+..|.-. ++.+..++.+. -...+++.
T Consensus 189 eS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~---~~~~~~~~~~~pl~~~~~~~ 265 (997)
T TIGR01106 189 NSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIA---SLASGLENGKTPIAIEIEHF 265 (997)
T ss_pred ccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHH---hhhhhcccCCCcHHHHHHHH
Confidence 666777753 32211110111221 23577888886322111122223333222 22222111111 12245666
Q ss_pred HHHHhcchhhHHHHHHHHHHHH-HHHhhhcCCCCCcccCCccchHHHHHHHHhheeeeeccccchhhHHHHHHH
Q 039776 497 ADRASKYFVPLVIILSFSTWLA-WYLAGNFHSYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMV 569 (922)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl~~~~P~~l~l~~~~~~~~ 569 (922)
.+.+..+.+.+.+++.++.++. +.+.. .+..++...++..-.+.|.++.++...+...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~ 324 (997)
T TIGR01106 266 IHIITGVAVFLGVSFFILSLILGYTWLE---------------AVIFLIGIIVANVPEGLLATVTVCLTLTAKR 324 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHH---------------HHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence 6777666555444444433322 11111 2334455566667778888888887776543
No 274
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=38.50 E-value=1.2e+02 Score=25.67 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=33.2
Q ss_pred EEEcCCCcchhHHHHHHHHHHCCCEEEE-EcCCCHHHHHHHHHHhCCc
Q 039776 719 VLSISDPLKPGAHGVISILKSMQIRSIL-VTGDNWGTAKSIASEVGIE 765 (922)
Q Consensus 719 ~~~~~d~~r~~~~~~i~~l~~~gi~~~~-~tgd~~~~a~~ia~~~gi~ 765 (922)
++.+.+...+.+.+..+.||+.|+++.+ ..+.....-...|.+.|+.
T Consensus 6 ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 6 VIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 3445667788899999999999999876 4555555555566666654
No 275
>COG4996 Predicted phosphatase [General function prediction only]
Probab=38.29 E-value=63 Score=29.70 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=53.3
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEe----cCChhhH----HHHHHHHHHc------CCeE
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIA----EAKPEQK----AEKVEELQAS------GYTV 790 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~----~~~p~~K----~~~v~~l~~~------g~~v 790 (922)
.++++++++++.+|+.|.-+..+|=..+..|....+.++++.+|- +.-| -| .++++.++.+ ...+
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP-~K~~ML~~llr~i~~er~~~ikP~~I 119 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHP-YKFLMLSQLLREINTERNQKIKPSEI 119 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCC-hhHHHHHHHHHHHHHhhccccCcceE
Confidence 478999999999999999999999999999999999999987654 2223 23 2344444432 2357
Q ss_pred EEEcCCc
Q 039776 791 AMVGDGI 797 (922)
Q Consensus 791 ~~vGDg~ 797 (922)
.++-|..
T Consensus 120 vy~DDR~ 126 (164)
T COG4996 120 VYLDDRR 126 (164)
T ss_pred EEEeccc
Confidence 7776653
No 276
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.76 E-value=2.2e+02 Score=30.50 Aligned_cols=61 Identities=11% Similarity=0.233 Sum_probs=35.1
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCCceEEecC--Cc--HHHHHhcCEEEeCCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAADVGMAIGA--GT--DIAIEAADIVLMKSN 831 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~vgia~~~--~~--~~~~~~ad~vl~~~~ 831 (922)
+||..=.++++.... .|++|+.+|-+.. =+.+|...+.-|.+.. .. ......||+++..-.
T Consensus 139 cTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIsAvG 209 (282)
T PRK14166 139 CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAG 209 (282)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCC
Confidence 344443444444432 5899999999854 2335555565555542 22 234467999987543
No 277
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=37.70 E-value=64 Score=31.37 Aligned_cols=47 Identities=34% Similarity=0.547 Sum_probs=36.0
Q ss_pred CccHHHHHHHHhccCCceEEEeeecCC-------------------eEEEEecCCCCCHHHHHHHH
Q 039776 82 TSCSSTVEKTFQAIQGVQNAHVTLATE-------------------EAEVHYDPRILSCNQLLKAI 128 (922)
Q Consensus 82 ~~C~~~ie~~l~~~~Gv~~~~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i 128 (922)
.+|-+-+|+...+++||.++.+-++.+ .+.|.|||..++.+++.+..
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~f 78 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVF 78 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHH
Confidence 355566888899999999987655444 36788999998888887765
No 278
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=37.07 E-value=3.6e+02 Score=31.94 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHhCCc-eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcc
Q 039776 729 GAHGVISILKSMQIRSILVTGDN-WGTAKSIASEVGIE-TVIAEAKPEQKAEKVEELQASGYTVAMVGDGIN 798 (922)
Q Consensus 729 ~~~~~i~~l~~~gi~~~~~tgd~-~~~a~~ia~~~gi~-~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~n 798 (922)
|+.+++...++.+-++.+++=.+ ...+..++.-++++ ..+.-.++++-...++.++++|.. +.|||+.-
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~G~~-~vvG~~~~ 165 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGIE-AVVGAGLI 165 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCC-EEEcCchH
Confidence 56777888888888888887544 55677888888887 345556778888899999999964 46799865
No 279
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=36.74 E-value=62 Score=29.83 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=40.6
Q ss_pred CCCCEEEEcC-CCee--eceEEEEe----cce---------------eeecccccCCCcccccCCCCeeecCccccc
Q 039776 406 QRNDVIKIIP-GAKV--ASDGYVLW----GKS---------------YVNESMITGEAWPVAKREGDTVTGGTLNEN 460 (922)
Q Consensus 406 ~~GDiv~v~~-G~~i--PaD~~vl~----g~~---------------~vdes~lTGEs~pv~k~~g~~v~~Gs~~~~ 460 (922)
..||=+-+.| +..| |+||++.. +++ -+|+..|.||-.-...+.||.|-+|+.+..
T Consensus 24 ~lG~GvaI~P~~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l~g~gF~~~vk~Gd~V~~G~~l~~ 100 (124)
T cd00210 24 MMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGEGFTSHVEEGQRVKQGDKLLE 100 (124)
T ss_pred CccceEEEEccCCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeecCCCceEEEecCCCEEcCCCEEEE
Confidence 3466666666 3333 99999974 221 279999999999888999999999997653
No 280
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.18 E-value=2.2e+02 Score=30.70 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=33.4
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhC----C--ceEEecCCc--HHHHHhcCEEEeC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAA----D--VGMAIGAGT--DIAIEAADIVLMK 829 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A----~--vgia~~~~~--~~~~~~ad~vl~~ 829 (922)
+||..=.++++..+. .|++|+.||.+.. =+.+|... + |-++-.... ......||+++..
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsA 211 (297)
T PRK14167 139 CTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAA 211 (297)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEc
Confidence 444444445554432 5899999999854 12244333 3 444433222 2345789999984
No 281
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=36.11 E-value=2.3e+02 Score=36.62 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=73.3
Q ss_pred HHHHHHHhccCCceEEEeeec-C--CeEEEEecCCCCCHH----HHHHHHHhc--CCc--cc---ccccccccccceeee
Q 039776 86 STVEKTFQAIQGVQNAHVTLA-T--EEAEVHYDPRILSCN----QLLKAIEDT--GFE--AI---PISTGEDIVSKIHLH 151 (922)
Q Consensus 86 ~~ie~~l~~~~Gv~~~~v~~~-~--~~~~v~~d~~~~~~~----~i~~~i~~~--G~~--~~---~~~~~~~~~~~~~~~ 151 (922)
..+|+.+..++|+++.+..-. . ....++++++. +.+ ++.+.+... .+. +. +.........-..+.
T Consensus 63 ~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v~~~~~~~~~~~~~~v~~~~ 141 (1037)
T PRK10555 63 QVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTIA 141 (1037)
T ss_pred HHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCccccCCceEeCCCCCceEEEE
Confidence 468999999999999986432 2 44677777664 333 344444322 111 11 111011101123444
Q ss_pred ec---C-CCch---h-hHHHHHhhhccCCCeeEEEecCCCceEEEEecCCC-----CChhhHHHHHHh
Q 039776 152 LD---G-LYTD---H-SVTMIESSLQALPGVLDIDLDPSIHKISISYKPAM-----TGPRNFIKMIES 206 (922)
Q Consensus 152 i~---g-m~c~---~-c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~-----~~~~~i~~~i~~ 206 (922)
+. | +.-. . -++.++..|+++|||.++.++-....+.|..||++ +++.++.+.++.
T Consensus 142 ~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~ 209 (1037)
T PRK10555 142 FVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIES 209 (1037)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 42 2 2211 1 23668899999999999999876667889999864 578888888874
No 282
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=35.87 E-value=5.9e+02 Score=27.49 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.6
Q ss_pred CCccHHHHHHHHhccCCceEEEe
Q 039776 81 CTSCSSTVEKTFQAIQGVQNAHV 103 (922)
Q Consensus 81 C~~C~~~ie~~l~~~~Gv~~~~v 103 (922)
...|...+++.+++.+||.+++.
T Consensus 70 ~~~~~~~v~~~i~~~~gV~~v~~ 92 (297)
T COG2177 70 DQDDAALVREKIEGIPGVKSVRF 92 (297)
T ss_pred ChHHHHHHHHHHhcCCCcceEEE
Confidence 38899999999999999998775
No 283
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=35.84 E-value=18 Score=35.96 Aligned_cols=13 Identities=38% Similarity=0.670 Sum_probs=12.3
Q ss_pred EEecCCCcccCCc
Q 039776 596 IVFDKTGTMTIGK 608 (922)
Q Consensus 596 i~~DKTGTLT~~~ 608 (922)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6999999999998
No 284
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.59 E-value=1.6e+02 Score=27.40 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCEEEEEEEcCCCcchhHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHhCCceEEe-cCChhhHHHHHHH
Q 039776 713 DGELTGVLSISDPLKPGAHGVISILKSMQI--RSILVTGDNWGTAKSIASEVGIETVIA-EAKPEQKAEKVEE 782 (922)
Q Consensus 713 ~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi--~~~~~tgd~~~~a~~ia~~~gi~~~~~-~~~p~~K~~~v~~ 782 (922)
+-.++|+-.+...-.+.++++++.|+++|. ..+++=|-....-..-.+++|++.+|. +.++.+....+..
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHH
No 285
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=35.40 E-value=5.4e+02 Score=26.85 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=52.3
Q ss_pred CCCcchhHHHHHHHHHHC---CCEEEEEcCCCHHHHHHHHHHhCCceEEe-------cCChhhHHHHHHHHHHcCCeEEE
Q 039776 723 SDPLKPGAHGVISILKSM---QIRSILVTGDNWGTAKSIASEVGIETVIA-------EAKPEQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~---gi~~~~~tgd~~~~a~~ia~~~gi~~~~~-------~~~p~~K~~~v~~l~~~g~~v~~ 792 (922)
.+.+.|+..++++..+.. |+.++-.+.|+...+++++.. |-+.+.- +. .-...+.++.+.+....-.+
T Consensus 102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~-G~~~vmPlg~pIGsg~-Gi~~~~~I~~I~e~~~vpVI 179 (248)
T cd04728 102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA-GCAAVMPLGSPIGSGQ-GLLNPYNLRIIIERADVPVI 179 (248)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCCCcCCCCCC-CCCCHHHHHHHHHhCCCcEE
Confidence 455689999999998888 999996777888888888754 7654421 11 11236677777775445567
Q ss_pred EcCCcccH
Q 039776 793 VGDGINDS 800 (922)
Q Consensus 793 vGDg~nD~ 800 (922)
++-|++-.
T Consensus 180 ~egGI~tp 187 (248)
T cd04728 180 VDAGIGTP 187 (248)
T ss_pred EeCCCCCH
Confidence 77776643
No 286
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.37 E-value=2.5e+02 Score=29.29 Aligned_cols=86 Identities=13% Similarity=0.194 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHCCCEEEEEcCC--CHHHHHHHHHHhCCceEEe------cCChhhHHHHHHHHHHcC-CeEEEEcCCc-
Q 039776 728 PGAHGVISILKSMQIRSILVTGD--NWGTAKSIASEVGIETVIA------EAKPEQKAEKVEELQASG-YTVAMVGDGI- 797 (922)
Q Consensus 728 ~~~~~~i~~l~~~gi~~~~~tgd--~~~~a~~ia~~~gi~~~~~------~~~p~~K~~~v~~l~~~g-~~v~~vGDg~- 797 (922)
++..+.++.+++.|++..++-.. +.+....+++...---+++ .-.+.+-.+.++.+++.. .....+|-|+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~ 195 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLD 195 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcC
Confidence 67889999999999998654433 3456677777654322222 112233334455555432 2346789998
Q ss_pred --ccHHHHHhCCc-eEEec
Q 039776 798 --NDSPALVAADV-GMAIG 813 (922)
Q Consensus 798 --nD~~al~~A~v-gia~~ 813 (922)
+|+..+..+++ |+-+|
T Consensus 196 ~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 196 SPEDARDALSAGADGVVVG 214 (244)
T ss_pred CHHHHHHHHHcCCCEEEEC
Confidence 35555444433 34444
No 287
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.16 E-value=1.2e+02 Score=32.45 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=33.4
Q ss_pred cCChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCCceEEec--CCc--HHHHHhcCEEEe
Q 039776 770 EAKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAADVGMAIG--AGT--DIAIEAADIVLM 828 (922)
Q Consensus 770 ~~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~--~~~~~~ad~vl~ 828 (922)
-+||..=.++++.... .|++|+.+|.+.. =+.+|...+.-|.+. ... ......||+++.
T Consensus 145 PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 145 PCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVV 213 (287)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEE
Confidence 3445444455555432 5899999999952 123444445444443 222 223467999886
No 288
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.02 E-value=2.3e+02 Score=30.51 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=33.6
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCCceEEec--CCc--HHHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAADVGMAIG--AGT--DIAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~--~~~~~~ad~vl~~~ 830 (922)
+||..=.++++.... +|++|+.||.+.. =+.+|...+.-|.+. ... ......||+++..-
T Consensus 140 cTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAv 209 (297)
T PRK14186 140 CTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAA 209 (297)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcc
Confidence 344444444554432 4899999999843 223444445444444 222 23446799998853
No 289
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=34.71 E-value=21 Score=30.09 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=16.9
Q ss_pred EecCCCcCCCCEEEEc-CCCeeec
Q 039776 399 EIDSRLIQRNDVIKII-PGAKVAS 421 (922)
Q Consensus 399 ~i~~~~l~~GDiv~v~-~G~~iPa 421 (922)
.+.-.+|.+||.|.|. +||.||-
T Consensus 44 ~i~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 44 YIKELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHHHTT-BBT-EEEEEEETTTEEE
T ss_pred HHHHcCCCCCCEEEEEECCCccce
Confidence 4556789999999885 5999995
No 290
>PRK11018 hypothetical protein; Provisional
Probab=34.09 E-value=1.8e+02 Score=24.28 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=42.6
Q ss_pred EEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCcccc
Q 039776 72 CRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIP 137 (922)
Q Consensus 72 ~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~ 137 (922)
..+.+.|..|+...-+.+++|++++. .+.+.|..|.+. +.+.+....+..||+...
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~~-a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCPQ-SINNIPLDARNHGYTVLD 64 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCcc-HHHHHHHHHHHcCCEEEE
Confidence 57889999999999999999988752 233455555433 578888899999998753
No 291
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=34.02 E-value=1.8e+02 Score=24.84 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=45.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc---cCccccccCCccccccceEEEEEEcCCCCCccHHHHHHHHhccCCceEEEee
Q 039776 32 AQVLFYPFFVNEETILEAIEG---VGFKATLVPGETIEKSTQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVT 104 (922)
Q Consensus 32 ~~v~~~~~~~~~~~i~~~v~~---~gy~~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~ 104 (922)
..|..+...++.+.+.+.+.+ .||...-...++.....+...+.+.--+-.+-...+++.+++.+||.++.+-
T Consensus 8 lkV~P~d~evdl~~L~~~ik~~l~~g~~~~~~~~epIaFGLkal~l~vvv~D~Eg~td~~ee~l~~vegV~sveve 83 (88)
T COG2092 8 LKVMPDDPEVDLEELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVVEDKEGGTDALEEALEEVEGVESVEVE 83 (88)
T ss_pred EEecCCCCCCCHHHHHHHHHHhccccceeccceeEeeeeeeeeEEEEEEEcccccCcHHHHHHHhhccCcceEEEE
Confidence 334444556778888888766 4665433333444444444444443334444568999999999999998764
No 292
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=33.82 E-value=97 Score=28.23 Aligned_cols=65 Identities=25% Similarity=0.338 Sum_probs=41.5
Q ss_pred CCCcchhHHHHHHHHHHCCCEE---EEEcCCCHHHHH------HHHHHhCCceEEe----cCChhhHHHHHHHHHHcC
Q 039776 723 SDPLKPGAHGVISILKSMQIRS---ILVTGDNWGTAK------SIASEVGIETVIA----EAKPEQKAEKVEELQASG 787 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~---~~~tgd~~~~a~------~ia~~~gi~~~~~----~~~p~~K~~~v~~l~~~g 787 (922)
...++++.++-++.|++.|+++ ++..||+..+.. ..|+++||..... ..+.++=.+.++.+.+..
T Consensus 9 a~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~ 86 (117)
T PF00763_consen 9 AKEIKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDP 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 3457788999999999998875 466798877554 4578899975444 346666677777776653
No 293
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.73 E-value=2.2e+02 Score=30.54 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=34.3
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHh------CCceEEecCCcH--HHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVA------ADVGMAIGAGTD--IAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~------A~vgia~~~~~~--~~~~~ad~vl~~~ 830 (922)
+||..=.++++.... +|++|+.||.+.. =+.+|.. |.|-+......+ .....||+++..-
T Consensus 139 cTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~Av 212 (286)
T PRK14184 139 CTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAI 212 (286)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEec
Confidence 444444445554432 4889999999844 1223433 455555543333 3457799988754
No 294
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=33.49 E-value=46 Score=34.01 Aligned_cols=93 Identities=15% Similarity=0.207 Sum_probs=53.0
Q ss_pred CchhHHHHHHHHhh-----------cCCCeeEEEEEecCCeEEEEEcCCCCCHHHHHHHHHccCcccccc-------CCc
Q 039776 2 TCSACAVSIEKAIK-----------RLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLV-------PGE 63 (922)
Q Consensus 2 ~C~~C~~~i~~~l~-----------~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~gy~~~~~-------~~~ 63 (922)
.|++|...+-.-|. ...||.-.+..-.++...+..+++ +...-.+.+...||+-+.. +.+
T Consensus 16 ~L~gCk~~Ly~gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~--~fa~Av~iL~~~GlPr~~f~~l~d~Fp~d 93 (246)
T COG4669 16 LLTGCKVDLYTGLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEES--DFAEAVEILNQNGLPRKKFTTLGDIFPKD 93 (246)
T ss_pred HHhcchHHHHcCCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHH--HHHHHHHHHHhcCCCCCCCCcHHHhCCcc
Confidence 57888654443322 336776667777777777776553 2344455567788874321 111
Q ss_pred c----ccccceEEEEEEcCCCCCccHHHHHHHHhccCCceEEEee
Q 039776 64 T----IEKSTQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVT 104 (922)
Q Consensus 64 ~----~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~ 104 (922)
. +..+..+..+ .=...+++.|.+++||.+++|+
T Consensus 94 gLVsSP~eEkaR~~~--------~~eQ~le~tLs~mDGVi~ArV~ 130 (246)
T COG4669 94 GLVSSPTEEKARLNY--------AKEQQLEQTLSKMDGVISARVH 130 (246)
T ss_pred cccCCcHHHHHHHHH--------HHHHHHHHHHHhcCceEEEEEE
Confidence 0 0000001111 1136799999999999998875
No 295
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=33.42 E-value=2.3e+02 Score=26.56 Aligned_cols=88 Identities=22% Similarity=0.188 Sum_probs=60.5
Q ss_pred EEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCH--H--------HHHHHHHHhCCceEEecCChhhHHHHHHHHH
Q 039776 715 ELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNW--G--------TAKSIASEVGIETVIAEAKPEQKAEKVEELQ 784 (922)
Q Consensus 715 ~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~--~--------~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~ 784 (922)
+-+++++++|.+...+-.+.+.|.++|++++-+--... + +-..|.....+-.+|- .|+.-.++++..-
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR--~~e~~~~i~~eal 94 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFR--RSEAAPEVAREAL 94 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEec--ChhhhHHHHHHHH
Confidence 34788999999999999999999999999998854111 0 1111111222224443 4677788888888
Q ss_pred HcCCeEEEEcCCcccHHHHH
Q 039776 785 ASGYTVAMVGDGINDSPALV 804 (922)
Q Consensus 785 ~~g~~v~~vGDg~nD~~al~ 804 (922)
+.|-++.+.--|+-+-++.+
T Consensus 95 ~~~~kv~W~QlGi~n~ea~~ 114 (140)
T COG1832 95 EKGAKVVWLQLGIRNEEAAE 114 (140)
T ss_pred hhCCCeEEEecCcCCHHHHH
Confidence 88888999888865554443
No 296
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=33.41 E-value=1.9e+02 Score=25.95 Aligned_cols=75 Identities=24% Similarity=0.264 Sum_probs=48.4
Q ss_pred EEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChh-hHHHHHHHHHHcCCe--EEEEcC
Q 039776 719 VLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPE-QKAEKVEELQASGYT--VAMVGD 795 (922)
Q Consensus 719 ~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~-~K~~~v~~l~~~g~~--v~~vGD 795 (922)
++.+.|.-+++..+..+.|.+.|+++. .|+ .|+..+. +.|++.-...--++ ...++...++++|+. |..+-|
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i~-AT~---gTa~~L~-~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPLF-ATG---GTSRVLA-DAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEEE-ECc---HHHHHHH-HcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 567888889999999999999999984 775 3555554 47887433322233 346677777652543 333344
Q ss_pred Ccc
Q 039776 796 GIN 798 (922)
Q Consensus 796 g~n 798 (922)
|.+
T Consensus 78 ~~~ 80 (112)
T cd00532 78 PRR 80 (112)
T ss_pred CCc
Confidence 433
No 297
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=33.27 E-value=73 Score=33.91 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=37.8
Q ss_pred CccHHHHHHHHhccCCceEEEeeecCC-------------------eEEEEecCCCCCHHHHHHHH
Q 039776 82 TSCSSTVEKTFQAIQGVQNAHVTLATE-------------------EAEVHYDPRILSCNQLLKAI 128 (922)
Q Consensus 82 ~~C~~~ie~~l~~~~Gv~~~~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i 128 (922)
++|-+-+|..+.+++||.++.+-+..+ .+.|.|||..++.+++.+..
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F 199 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVF 199 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHH
Confidence 567777888999999999998766543 37888999998888887755
No 298
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=33.04 E-value=3.9e+02 Score=24.56 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=54.0
Q ss_pred EcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHcCCeEEEEcCCcc--
Q 039776 721 SISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGYTVAMVGDGIN-- 798 (922)
Q Consensus 721 ~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~n-- 798 (922)
.+-+++.++..+.+++ |+.+.+............. -+.+.+.....+.-..++++.+ ..-+-+...|-|.|
T Consensus 2 li~~~~~~~~~~~l~~----~~~v~~~~~~~~~~~~~~l--~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~i 74 (133)
T PF00389_consen 2 LITDPLPDEEIERLEE----GFEVEFCDSPSEEELAERL--KDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNI 74 (133)
T ss_dssp EESSS-SHHHHHHHHH----TSEEEEESSSSHHHHHHHH--TTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB
T ss_pred EEeccCCHHHHHHHHC----CceEEEeCCCCHHHHHHHh--CCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcc
Confidence 4556777766666655 8888888744444333322 3456666665553345666666 33457888899988
Q ss_pred cHHHHHhCCceEEecC
Q 039776 799 DSPALVAADVGMAIGA 814 (922)
Q Consensus 799 D~~al~~A~vgia~~~ 814 (922)
|..+++.-++-++-..
T Consensus 75 d~~~a~~~gI~V~n~~ 90 (133)
T PF00389_consen 75 DLEAAKERGIPVTNVP 90 (133)
T ss_dssp -HHHHHHTTSEEEE-T
T ss_pred cHHHHhhCeEEEEEeC
Confidence 8899999988887664
No 299
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.86 E-value=58 Score=29.61 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=30.4
Q ss_pred cchhHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHhCCceE
Q 039776 726 LKPGAHGVISILKSMQIR-SILVTGDNWGTAKSIASEVGIETV 767 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~-~~~~tgd~~~~a~~ia~~~gi~~~ 767 (922)
..+.+.+.++++.+.|++ +|+.+|.....+...|++.|+..+
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 445678999999999997 678999888899999999888644
No 300
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.81 E-value=6.1e+02 Score=26.73 Aligned_cols=78 Identities=26% Similarity=0.149 Sum_probs=51.7
Q ss_pred CCcchhHHHHHHHHHHCCCEEE-EEcCCC-HHHHHHHHHHhCCceEE-ec--------CChhhHHHHHHHHHHcCCeEEE
Q 039776 724 DPLKPGAHGVISILKSMQIRSI-LVTGDN-WGTAKSIASEVGIETVI-AE--------AKPEQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 724 d~~r~~~~~~i~~l~~~gi~~~-~~tgd~-~~~a~~ia~~~gi~~~~-~~--------~~p~~K~~~v~~l~~~g~~v~~ 792 (922)
|-+-++..+.++.+++.|+..+ ++|-.. .+..+.+++...=-.++ +. -.|.+-.+.++.+++....-.+
T Consensus 125 DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~ 204 (258)
T PRK13111 125 DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVA 204 (258)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEE
Confidence 5555889999999999999876 477665 45677777765322222 11 1234445678888876556667
Q ss_pred EcCCcccHH
Q 039776 793 VGDGINDSP 801 (922)
Q Consensus 793 vGDg~nD~~ 801 (922)
+|-|+++..
T Consensus 205 vGfGI~~~e 213 (258)
T PRK13111 205 VGFGISTPE 213 (258)
T ss_pred EEcccCCHH
Confidence 899996543
No 301
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.46 E-value=1.8e+02 Score=27.08 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCEEEEEEEcCCCcchhHHHHHHHHHHCCC-EE-EEEcCCCH------HHHHHHHHHhCCceEEecCCh
Q 039776 713 DGELTGVLSISDPLKPGAHGVISILKSMQI-RS-ILVTGDNW------GTAKSIASEVGIETVIAEAKP 773 (922)
Q Consensus 713 ~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi-~~-~~~tgd~~------~~a~~ia~~~gi~~~~~~~~p 773 (922)
+-.++|+-.+.-.--+..+++++.|+++|+ .+ +++-|-.. .....-.+++|++.+|..=+|
T Consensus 50 ~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~ 118 (128)
T cd02072 50 DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTP 118 (128)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCCC
Confidence 446788888888888999999999999998 55 45555421 233466788999999875443
No 302
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.41 E-value=2.4e+02 Score=30.20 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=33.5
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCCceEEec--CCcH--HHHHhcCEEEeCCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAADVGMAIG--AGTD--IAIEAADIVLMKSN 831 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~~--~~~~~ad~vl~~~~ 831 (922)
+||..=.++++...- +|++|+.+|.+.. =+.+|...+.-+.+. ...+ .....||+++..-.
T Consensus 140 cTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG 210 (284)
T PRK14190 140 CTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVAVG 210 (284)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEecC
Confidence 344444445554432 4889999999843 123444444444433 2222 34577899887543
No 303
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.32 E-value=2.7e+02 Score=29.02 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=67.7
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCce----EEecC---C-----hhhHHHHHHHHH---------
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIET----VIAEA---K-----PEQKAEKVEELQ--------- 784 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~----~~~~~---~-----p~~K~~~v~~l~--------- 784 (922)
+|++..+....|++.+|++.+.|-.--.....+-++....+ +.+.. . -.-+..++..+.
T Consensus 139 lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~~ 218 (298)
T KOG3128|consen 139 LREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQNE 218 (298)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHhh
Confidence 78899999999999999999998666665555555543311 11110 0 001112222111
Q ss_pred -------HcCCeEEEEcCCcccHHHHHhCC-----ceEEecC--Cc---HHHHHhcCEEEeCCChhhHHHH
Q 039776 785 -------ASGYTVAMVGDGINDSPALVAAD-----VGMAIGA--GT---DIAIEAADIVLMKSNLEDEITA 838 (922)
Q Consensus 785 -------~~g~~v~~vGDg~nD~~al~~A~-----vgia~~~--~~---~~~~~~ad~vl~~~~~~~l~~~ 838 (922)
..+..|...||.+.|+-|-..+- .-|+.++ .. ..-++.-|+||..|..-+++.-
T Consensus 219 s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~~D~tldv~~s 289 (298)
T KOG3128|consen 219 SEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLVHDETLDVANS 289 (298)
T ss_pred hHHHhhccCCceEEEeccccccchhhcCCcccccceeeecccchHHHHHHHHHhhcceEEecCcccchhHH
Confidence 12457999999999988753221 2233332 22 2344778999999887777653
No 304
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.28 E-value=2.4e+02 Score=30.44 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=34.5
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc---cHH-HHH------hCCceEEecCCc--HHHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN---DSP-ALV------AADVGMAIGAGT--DIAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n---D~~-al~------~A~vgia~~~~~--~~~~~~ad~vl~~~ 830 (922)
+||..=.++++.... +|++|+.+|.+.. =.. +|. .|.|-+...... ......||+++..-
T Consensus 141 cTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Av 214 (295)
T PRK14174 141 CTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAI 214 (295)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEec
Confidence 445444445554432 4899999999854 222 332 344555554332 33457899998764
No 305
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=32.22 E-value=3e+02 Score=31.98 Aligned_cols=123 Identities=16% Similarity=0.298 Sum_probs=69.2
Q ss_pred hHHHHHHHhccCceEEEE-EECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEE---EEEcCCCHHHHHHHHHHhCCceEE
Q 039776 693 TEEMLTETEGMAQTEILV-SVDGELTGVLSISDPLKPGAHGVISILKSMQIRS---ILVTGDNWGTAKSIASEVGIETVI 768 (922)
Q Consensus 693 ~~~~~~~~~~~~~~~l~v-~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~---~~~tgd~~~~a~~ia~~~gi~~~~ 768 (922)
..+.++.+.+.+...+.| ..+++++|++...|-++.........-+. -..+ +-++.|..+.+..+.+ .|.+.+.
T Consensus 165 L~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~g-rl~Vgaav~~~~~~~~ra~~Lv~-aGVd~i~ 242 (475)
T TIGR01303 165 PRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAG-RLRIGAAVGINGDVGGKAKALLD-AGVDVLV 242 (475)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhcc-CceehheeeeCccHHHHHHHHHH-hCCCEEE
Confidence 344555555555555544 34789999999999887544443322221 1222 2233455566666654 5777665
Q ss_pred ecCC---hhhHHHHHHHHHHcC-CeEEEEcCCc--ccHHHHHhCC---ceEEecCCcH
Q 039776 769 AEAK---PEQKAEKVEELQASG-YTVAMVGDGI--NDSPALVAAD---VGMAIGAGTD 817 (922)
Q Consensus 769 ~~~~---p~~K~~~v~~l~~~g-~~v~~vGDg~--nD~~al~~A~---vgia~~~~~~ 817 (922)
-+.+ |+.-.+.++.+++.. ..-.++|.+. +++..|..|+ |.|++|+|+.
T Consensus 243 ~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~ 300 (475)
T TIGR01303 243 IDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAM 300 (475)
T ss_pred EeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCcc
Confidence 5443 344566788888763 3445556453 4555666665 4455555543
No 306
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=32.18 E-value=2.1e+02 Score=29.37 Aligned_cols=103 Identities=20% Similarity=0.175 Sum_probs=65.9
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC-Cc-----eEEe--------cCChhhHHHHHHHHHHcC-Ce
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVG-IE-----TVIA--------EAKPEQKAEKVEELQASG-YT 789 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~g-i~-----~~~~--------~~~p~~K~~~v~~l~~~g-~~ 789 (922)
.+-||+.+.++.|+..|+.+.++|+-+..+...-....+ +- .++. ...|+-=....+.+.... .+
T Consensus 92 ~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k 171 (222)
T KOG2914|consen 92 ILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSK 171 (222)
T ss_pred ccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCccc
Confidence 356799999999999999999999987666553333333 32 1220 112222233455555556 78
Q ss_pred EEEEcCCcccHHHHHhCCceEEecC---CcHHHHHhcCEEE
Q 039776 790 VAMVGDGINDSPALVAADVGMAIGA---GTDIAIEAADIVL 827 (922)
Q Consensus 790 v~~vGDg~nD~~al~~A~vgia~~~---~~~~~~~~ad~vl 827 (922)
++++.|..+=..|.+.|+.-+-+-. -.......+++++
T Consensus 172 ~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~ 212 (222)
T KOG2914|consen 172 CLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLIL 212 (222)
T ss_pred eEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceec
Confidence 9999999999999999986554432 2233334455544
No 307
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=32.05 E-value=2.5e+02 Score=28.12 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCEEEEEc-------------CCCHHHHHHHHHHhCCceEEecCCh---hh---HHHHHHHHHHcCCeE
Q 039776 730 AHGVISILKSMQIRSILVT-------------GDNWGTAKSIASEVGIETVIAEAKP---EQ---KAEKVEELQASGYTV 790 (922)
Q Consensus 730 ~~~~i~~l~~~gi~~~~~t-------------gd~~~~a~~ia~~~gi~~~~~~~~p---~~---K~~~v~~l~~~g~~v 790 (922)
..-++..++++|.++.-++ +.+...++.+|+.+|++.+.....+ +. -.+.++.++++|...
T Consensus 12 S~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~ 91 (194)
T cd01994 12 SCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDA 91 (194)
T ss_pred HHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCE
Confidence 3445556666777654222 1155678899999999877665433 11 123344444455666
Q ss_pred EEEcCCcccH
Q 039776 791 AMVGDGINDS 800 (922)
Q Consensus 791 ~~vGDg~nD~ 800 (922)
+..||-.-|.
T Consensus 92 vv~G~i~sd~ 101 (194)
T cd01994 92 VVFGAILSEY 101 (194)
T ss_pred EEECccccHH
Confidence 6667665553
No 308
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.87 E-value=5.8e+02 Score=30.14 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHCCCEEEEEcCC-CHHHHHHHHHHhCCc-eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHHHHhC
Q 039776 729 GAHGVISILKSMQIRSILVTGD-NWGTAKSIASEVGIE-TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPALVAA 806 (922)
Q Consensus 729 ~~~~~i~~l~~~gi~~~~~tgd-~~~~a~~ia~~~gi~-~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A 806 (922)
|+..++...++.+-++.+++=. ....+..++.-++++ ..+.-.++++-...++.++++|.. +.|||+.-- ...+..
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~-~viG~~~~~-~~A~~~ 162 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIG-AVVGAGLIT-DLAEQA 162 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCC-EEECChHHH-HHHHHc
Confidence 5677788888877788877644 445678888889987 345556778888899999999964 567998542 233444
Q ss_pred CceEEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHHHHHHH
Q 039776 807 DVGMAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSRKTFSR 848 (922)
Q Consensus 807 ~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~ 848 (922)
++ ..|+..+ .+++..++..+..+.+.
T Consensus 163 gl---------------~~ili~s-~esi~~a~~~A~~~~~~ 188 (526)
T TIGR02329 163 GL---------------HGVFLYS-ADSVRQAFDDALDVARA 188 (526)
T ss_pred CC---------------ceEEEec-HHHHHHHHHHHHHHHHH
Confidence 33 2233333 36677777776665443
No 309
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=31.72 E-value=1.4e+02 Score=29.34 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=52.9
Q ss_pred cCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH---hCCceEE---ecCChhhHH------HHHHHHHHcCCe
Q 039776 722 ISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASE---VGIETVI---AEAKPEQKA------EKVEELQASGYT 789 (922)
Q Consensus 722 ~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~---~gi~~~~---~~~~p~~K~------~~v~~l~~~g~~ 789 (922)
+.-++.||+.+.|++-+++|+++.+-|......-+-+-.. ..+..+| .+.+-..|. +|.+..--..+.
T Consensus 100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~e 179 (229)
T COG4229 100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAE 179 (229)
T ss_pred cccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchh
Confidence 3568999999999999999999998876554432211111 0111222 222323332 344433334567
Q ss_pred EEEEcCCcccHHHHHhCC
Q 039776 790 VAMVGDGINDSPALVAAD 807 (922)
Q Consensus 790 v~~vGDg~nD~~al~~A~ 807 (922)
++++.|.++...|.+.++
T Consensus 180 ilFLSDn~~EL~AA~~vG 197 (229)
T COG4229 180 ILFLSDNPEELKAAAGVG 197 (229)
T ss_pred eEEecCCHHHHHHHHhcc
Confidence 999999999888866555
No 310
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=31.46 E-value=1.1e+02 Score=29.14 Aligned_cols=47 Identities=36% Similarity=0.573 Sum_probs=36.1
Q ss_pred CccHHHHHHHHhccCCceEEEeeecC-------------------CeEEEEecCCCCCHHHHHHHH
Q 039776 82 TSCSSTVEKTFQAIQGVQNAHVTLAT-------------------EEAEVHYDPRILSCNQLLKAI 128 (922)
Q Consensus 82 ~~C~~~ie~~l~~~~Gv~~~~v~~~~-------------------~~~~v~~d~~~~~~~~i~~~i 128 (922)
++|-+-+|....+++||.++.+-+.. +.+.|.|||..++.+++.+..
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f 72 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVF 72 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHH
Confidence 46777788899999999998765433 346778899888888887755
No 311
>PRK04302 triosephosphate isomerase; Provisional
Probab=31.31 E-value=3.9e+02 Score=27.37 Aligned_cols=87 Identities=21% Similarity=0.309 Sum_probs=53.9
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEec-------------CChhhHHHHHHHHHHc-CCeEE
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAE-------------AKPEQKAEKVEELQAS-GYTVA 791 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~-------------~~p~~K~~~v~~l~~~-g~~v~ 791 (922)
+.+++.+.++.+++.|+.+++++|+.. .+.. +.+.+-+-++.. .+|++-.++++.+++. .+.-.
T Consensus 99 ~~~e~~~~v~~a~~~Gl~~I~~v~~~~-~~~~-~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pv 176 (223)
T PRK04302 99 TLADIEAVVERAKKLGLESVVCVNNPE-TSAA-AAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKV 176 (223)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEcCCHH-HHHH-HhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEE
Confidence 445688999999999999999999843 3443 344554433311 2466666667777763 23455
Q ss_pred EEcCCcccHHHHH---hCC-ceEEecC
Q 039776 792 MVGDGINDSPALV---AAD-VGMAIGA 814 (922)
Q Consensus 792 ~vGDg~nD~~al~---~A~-vgia~~~ 814 (922)
..|-|+++....+ .++ =|+.+|+
T Consensus 177 i~GggI~~~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 177 LCGAGISTGEDVKAALELGADGVLLAS 203 (223)
T ss_pred EEECCCCCHHHHHHHHcCCCCEEEEeh
Confidence 6788887654443 333 3466654
No 312
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=30.04 E-value=1.9e+02 Score=33.20 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCC--hhhH---HHHHHHHHHcCCe
Q 039776 728 PGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAK--PEQK---AEKVEELQASGYT 789 (922)
Q Consensus 728 ~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~--p~~K---~~~v~~l~~~g~~ 789 (922)
+...+.=++|++.|++..+..|+.......++++.++..+++.-. |.++ ..+.+.+++.|-.
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~ 127 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGIH 127 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCce
Confidence 344555567888999999999999999999999999999998654 4333 2344445555543
No 313
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=30.00 E-value=1.8e+02 Score=32.28 Aligned_cols=92 Identities=25% Similarity=0.352 Sum_probs=63.4
Q ss_pred CceEEEEEE-CCEEEEEEEcCCCcchhHHHHHHHHHHCCCE--EEEEcCCCHHH-HHHHHHHhCCc--eEEecCChhhHH
Q 039776 704 AQTEILVSV-DGELTGVLSISDPLKPGAHGVISILKSMQIR--SILVTGDNWGT-AKSIASEVGIE--TVIAEAKPEQKA 777 (922)
Q Consensus 704 ~~~~l~v~~-~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~--~~~~tgd~~~~-a~~ia~~~gi~--~~~~~~~p~~K~ 777 (922)
....+|+-+ +.+..|.|-++ |+..++++|-+.+.+ ++-.|+.|+.. +..-|+++|+. .++-..+|..|
T Consensus 79 ~g~~vyLK~E~lQpsgSFK~R-----Ga~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~k- 152 (457)
T KOG1250|consen 79 AGMPVYLKREDLQPSGSFKIR-----GAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMK- 152 (457)
T ss_pred cCCceEEEehhcccccceehh-----hHHHHHHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHH-
Confidence 344556544 56777776653 788888888777643 45566666655 45667899997 56667889888
Q ss_pred HHHHHHHHcCCeEEEEcCCcccHHHH
Q 039776 778 EKVEELQASGYTVAMVGDGINDSPAL 803 (922)
Q Consensus 778 ~~v~~l~~~g~~v~~vGDg~nD~~al 803 (922)
++.++..|..|...|+....+.++
T Consensus 153 --iq~~~nlGA~Vil~G~~~deAk~~ 176 (457)
T KOG1250|consen 153 --IQRCRNLGATVILSGEDWDEAKAF 176 (457)
T ss_pred --HHHHhccCCEEEEecccHHHHHHH
Confidence 555666789999999886644443
No 314
>PRK09577 multidrug efflux protein; Reviewed
Probab=29.96 E-value=1.3e+03 Score=29.81 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=70.1
Q ss_pred HHHHHHhhcCCCeeEEEEEe--cCCeEEEEEcCCCCC----HHHHHHHHHccC--ccccccCCccc---cccceEEEEEE
Q 039776 8 VSIEKAIKRLPGIHDAVVDV--LNNRAQVLFYPFFVN----EETILEAIEGVG--FKATLVPGETI---EKSTQVCRIRI 76 (922)
Q Consensus 8 ~~i~~~l~~~~gV~~v~v~~--~~~~~~v~~~~~~~~----~~~i~~~v~~~g--y~~~~~~~~~~---~~~~~~~~~~i 76 (922)
..+|++++.++|++++.-.- ....+.+.++.. .+ ..++.+.+.+.. .+.....+... ........+.+
T Consensus 63 ~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g-~d~~~a~~~V~~~v~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~l 141 (1032)
T PRK09577 63 ALIEREMNGAPGLLYTSATSSAGQASLSLTFKQG-VNADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVSL 141 (1032)
T ss_pred HHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHHhCCcccccCCceEeccCCCceEEEEE
Confidence 57899999999999876543 344455555543 22 345666665432 22110000000 00001122333
Q ss_pred cCC---CC-Cc-c---HHHHHHHHhccCCceEEEeeecCCeEEEEecCCC-----CCHHHHHHHHHhcCC
Q 039776 77 KKL---TC-TS-C---SSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRI-----LSCNQLLKAIEDTGF 133 (922)
Q Consensus 77 ~gm---~C-~~-C---~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~-----~~~~~i~~~i~~~G~ 133 (922)
.+- .. .. . ...++..|++++||.++.++-...++.+..||.+ .+..++.+.+.....
T Consensus 142 ~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~~n~ 211 (1032)
T PRK09577 142 TSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRAHNA 211 (1032)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHhCC
Confidence 221 11 00 1 2568899999999999998754455666667653 567788888876543
No 315
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=29.89 E-value=3.2e+02 Score=27.99 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCEEE-EEc------------CCCHHHHHHHHHHhCCceEEecCC---hhhH---HHHHHHHHHcCCeEE
Q 039776 731 HGVISILKSMQIRSI-LVT------------GDNWGTAKSIASEVGIETVIAEAK---PEQK---AEKVEELQASGYTVA 791 (922)
Q Consensus 731 ~~~i~~l~~~gi~~~-~~t------------gd~~~~a~~ia~~~gi~~~~~~~~---p~~K---~~~v~~l~~~g~~v~ 791 (922)
.-++..++++|.++. ++| +.....++.+|+.+|++.....++ +... ...++.++++|-...
T Consensus 11 ~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~g~~~v 90 (218)
T TIGR03679 11 NYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKREGVEGI 90 (218)
T ss_pred HHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHcCCCEE
Confidence 345566667787763 434 345678889999999987766655 3222 233444555577777
Q ss_pred EEcCCccc
Q 039776 792 MVGDGIND 799 (922)
Q Consensus 792 ~vGDg~nD 799 (922)
..||-.-|
T Consensus 91 v~G~i~sd 98 (218)
T TIGR03679 91 VTGAIASR 98 (218)
T ss_pred EECCcccH
Confidence 77776544
No 316
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.47 E-value=3.4e+02 Score=29.04 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=33.4
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHh--CCceEEec--CCc--HHHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVA--ADVGMAIG--AGT--DIAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~--A~vgia~~--~~~--~~~~~~ad~vl~~~ 830 (922)
+||..=.++++.... .|++|+.+|.+.. =+.+|.. .+..|.+. ... ......||+++..-
T Consensus 140 cTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~Av 211 (284)
T PRK14193 140 CTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAA 211 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEec
Confidence 344444445554432 4889999999854 1223433 45444444 222 23446799998753
No 317
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=29.25 E-value=2.1e+02 Score=30.82 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhhcCCCeeEEEEEecCCeEEEEEcCCCCCHHHHHHHHHccCccccccCCccccccceEEEEEEcCCCCCc
Q 039776 4 SACAVSIEKAIKRLPGIHDAVVDVLNNRAQVLFYPFFVNEETILEAIEGVGFKATLVPGETIEKSTQVCRIRIKKLTCTS 83 (922)
Q Consensus 4 ~~C~~~i~~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~gy~~~~~~~~~~~~~~~~~~~~i~gm~C~~ 83 (922)
..|.+.+++.+++.+||+++..- + ..+.+.+..+..|+. .....+ .++-+....+.++. +.
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~-----------s---re~~l~~L~~~lg~~-~~~~l~-~nPLP~~~vV~~~~---p~ 131 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI-----------S---REEALKELQPWLGFG-ALLMLD-ENPLPDVFVVTPDD---PP 131 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe-----------C---HHHHHHHHHHHcCch-hhhcCC-CCCCCceEEEEeCC---Cc
Confidence 45778888888888888554321 1 135566666667764 111111 11112233344433 55
Q ss_pred cHHHHHHHHhccCCceEEE
Q 039776 84 CSSTVEKTFQAIQGVQNAH 102 (922)
Q Consensus 84 C~~~ie~~l~~~~Gv~~~~ 102 (922)
-...+.+++++++||.+++
T Consensus 132 ~~~~i~~~l~~l~gV~~V~ 150 (297)
T COG2177 132 QVKAIAAALRDLPGVAEVD 150 (297)
T ss_pred cHHHHHHHHHcCccceehh
Confidence 5566777777777776654
No 318
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=29.21 E-value=5.2e+02 Score=25.66 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHCCCEEEE--EcCCCHHHHHHHHHHhCCceEEecC--Chhh-----HHHHHHHHHHcCCeEEEEcCCcc
Q 039776 728 PGAHGVISILKSMQIRSIL--VTGDNWGTAKSIASEVGIETVIAEA--KPEQ-----KAEKVEELQASGYTVAMVGDGIN 798 (922)
Q Consensus 728 ~~~~~~i~~l~~~gi~~~~--~tgd~~~~a~~ia~~~gi~~~~~~~--~p~~-----K~~~v~~l~~~g~~v~~vGDg~n 798 (922)
....+.++.+++.|+++.+ ++-++...... +...|.+.+...+ ++.. -.+.++.+.+..+.-.+++-|+|
T Consensus 90 ~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~ 168 (202)
T cd04726 90 STIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT 168 (202)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC
Confidence 3467889999999999875 67777777766 6777887654321 1111 13445555442333344444665
Q ss_pred --cHHHHHhCC-ceEEec
Q 039776 799 --DSPALVAAD-VGMAIG 813 (922)
Q Consensus 799 --D~~al~~A~-vgia~~ 813 (922)
++..+..++ -++.+|
T Consensus 169 ~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 169 PDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 444444443 244454
No 319
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.99 E-value=3.4e+02 Score=29.17 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=32.8
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHh------CCceEEecCCc--HHHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVA------ADVGMAIGAGT--DIAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~------A~vgia~~~~~--~~~~~~ad~vl~~~ 830 (922)
+||..=.++++.... +|++|+.+|.+.. =+.+|.. |.|-+.-.... ......||+++..-
T Consensus 139 cTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAv 212 (293)
T PRK14185 139 ATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAAL 212 (293)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEcc
Confidence 344444445554432 4899999999843 1234433 33444433222 23346799998753
No 320
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=28.88 E-value=2.8e+02 Score=24.92 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=37.7
Q ss_pred HHHHHHHHHCCCEEEEEc-CCCHH-------HHHHHHHHhCCceEEe-----cCChhhHHHHHHHHHHcC-CeEEEEcCC
Q 039776 731 HGVISILKSMQIRSILVT-GDNWG-------TAKSIASEVGIETVIA-----EAKPEQKAEKVEELQASG-YTVAMVGDG 796 (922)
Q Consensus 731 ~~~i~~l~~~gi~~~~~t-gd~~~-------~a~~ia~~~gi~~~~~-----~~~p~~K~~~v~~l~~~g-~~v~~vGDg 796 (922)
++-+++|+++|++.+|.= .|.+. .-...|+++|+..++- .+++++=..+.+.+.+.. ...+++.-|
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCS
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 466789999999988764 23221 2357889999986554 455555566666666554 445556655
Q ss_pred c
Q 039776 797 I 797 (922)
Q Consensus 797 ~ 797 (922)
.
T Consensus 97 ~ 97 (110)
T PF04273_consen 97 T 97 (110)
T ss_dssp H
T ss_pred h
Confidence 3
No 321
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.28 E-value=3.4e+02 Score=28.61 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCEEEEEcC-CCHHHHHHHHHHhCCceEEe
Q 039776 732 GVISILKSMQIRSILVTG-DNWGTAKSIASEVGIETVIA 769 (922)
Q Consensus 732 ~~i~~l~~~gi~~~~~tg-d~~~~a~~ia~~~gi~~~~~ 769 (922)
+.++.+.+.++.=+++++ +.......-+++.|+..++.
T Consensus 47 ~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~ 85 (283)
T cd06279 47 SDSALVVSALVDGFIVYGVPRDDPLVAALLRRGLPVVVV 85 (283)
T ss_pred HHHHHHHhcCCCEEEEeCCCCChHHHHHHHHcCCCEEEE
Confidence 455556666665444443 22222334445566654443
No 322
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=27.83 E-value=1.5e+02 Score=37.52 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=56.2
Q ss_pred chHHHHHHHhccCceEEEEEECCEEEEEEEcCC-----------CcchhHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHH
Q 039776 692 DTEEMLTETEGMAQTEILVSVDGELTGVLSISD-----------PLKPGAHGVISILKSM-QIRSILVTGDNWGTAKSIA 759 (922)
Q Consensus 692 ~~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~d-----------~~r~~~~~~i~~l~~~-gi~~~~~tgd~~~~a~~ia 759 (922)
+.......+.....+.+++.+||++..+..--+ .+.+++.++++.|.+. +-.|+++||+.........
T Consensus 578 ~~~~~~~~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~f 657 (934)
T PLN03064 578 PPEDAIQRYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENF 657 (934)
T ss_pred CHHHHHHHHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHh
Confidence 455667777777788899999999987643322 2447889999999875 6789999999999988877
Q ss_pred HHhCC
Q 039776 760 SEVGI 764 (922)
Q Consensus 760 ~~~gi 764 (922)
..+++
T Consensus 658 g~~~L 662 (934)
T PLN03064 658 GEFDM 662 (934)
T ss_pred CCCCc
Confidence 76654
No 323
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=27.77 E-value=9.2e+02 Score=29.45 Aligned_cols=66 Identities=11% Similarity=-0.017 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH-HHHHHHhccCCCeEEEEeecCCCCcceeEEecCCCcCCCCEEEEcCCCeeeceEEEE
Q 039776 348 SMLISFILLGKYLEVLAKGKTS-EAIAKLLDLAPEAATLLTMDEEGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVL 426 (922)
Q Consensus 348 ~~l~~~~~~~~~~e~~~~~~~~-~~l~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDiv~v~~G~~iPaD~~vl 426 (922)
..+.+++++.-++..+++.+++ +.-+.+..+...... -+ ...+ ++-|....|...|.+|=|-+++
T Consensus 66 ~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~-------~~---a~~v----~rdg~~~~I~a~eLv~GDiV~v 131 (673)
T PRK14010 66 FSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTE-------MK---ARRI----KQDGSYEMIDASDLKKGHIVRV 131 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-------ce---EEEE----EeCCEEEEEEHHHcCCCCEEEE
Confidence 5566677788888988888876 444445555321111 00 1111 1357778899999999999998
Q ss_pred e
Q 039776 427 W 427 (922)
Q Consensus 427 ~ 427 (922)
+
T Consensus 132 ~ 132 (673)
T PRK14010 132 A 132 (673)
T ss_pred C
Confidence 6
No 324
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=27.58 E-value=2e+02 Score=23.17 Aligned_cols=54 Identities=19% Similarity=0.157 Sum_probs=40.3
Q ss_pred EEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCcccc
Q 039776 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIP 137 (922)
Q Consensus 74 ~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~ 137 (922)
+.+.|+.|+.-.-...+++++++. .+.+.|..|.+ ...+.+....+..||+...
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~-~a~~di~~~~~~~G~~~~~ 55 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDP-GFARDAQAWCKSTGNTLIS 55 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEEE
Confidence 456799999999999999988752 23445555543 3578899999999998754
No 325
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=27.32 E-value=2.3e+02 Score=32.94 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecCC--hhh---HHHHHHHHHHcCCeE
Q 039776 728 PGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEAK--PEQ---KAEKVEELQASGYTV 790 (922)
Q Consensus 728 ~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~~--p~~---K~~~v~~l~~~g~~v 790 (922)
+...+.=++|++.|+++.+..|+.......++++.+++.+++... |.. -..+.+.+++.|-.|
T Consensus 55 esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~ 122 (471)
T TIGR03556 55 GCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKAVYWNLDVEPYGRKRDRAVAAALKEAGIAV 122 (471)
T ss_pred HHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHCCCEE
Confidence 444555567888999999999999999999999999999997543 322 234556666666444
No 326
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.27 E-value=3.7e+02 Score=29.58 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=28.5
Q ss_pred cCCeEEEEcCCcc----cHHHHHhCCceEEecC--C--cHHHHHhcCEEEeCCC
Q 039776 786 SGYTVAMVGDGIN----DSPALVAADVGMAIGA--G--TDIAIEAADIVLMKSN 831 (922)
Q Consensus 786 ~g~~v~~vGDg~n----D~~al~~A~vgia~~~--~--~~~~~~~ad~vl~~~~ 831 (922)
+|++|+.||.+.. =+.+|...+.-|.+.. . -......||+++..-.
T Consensus 213 ~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvG 266 (345)
T PLN02897 213 AGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAG 266 (345)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccC
Confidence 4899999999843 2335555555555542 2 2334467999988543
No 327
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.14 E-value=3.9e+02 Score=28.57 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=33.9
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCCceEEec--CCc--HHHHHhcCEEEeCCCh
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAADVGMAIG--AGT--DIAIEAADIVLMKSNL 832 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~--~~~~~~ad~vl~~~~~ 832 (922)
+||..=.++++..+- +|++|+.+|.+.. =+.+|...+.-+.+. ... ......||+++..-.-
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGk 210 (281)
T PRK14183 139 CTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGK 210 (281)
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCc
Confidence 344333444444432 4889999999932 123444445444443 222 2234679999886443
No 328
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.72 E-value=3.8e+02 Score=28.78 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=33.6
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCCceEEecC--CcH--HHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAADVGMAIGA--GTD--IAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~vgia~~~--~~~--~~~~~ad~vl~~~ 830 (922)
+||..=.++++..+- .|++|+.||.+.. =+.+|...+.-|.+.. ..+ .....||+++..-
T Consensus 141 cTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~Av 210 (288)
T PRK14171 141 CTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAI 210 (288)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcc
Confidence 344433344444332 4889999999843 2234555555555542 322 2346799998753
No 329
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=26.61 E-value=1.9e+02 Score=24.60 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=37.3
Q ss_pred EEEEcCC---CcchhHHHHHHHHHHCCCEEEEE-cCCCHHHHHHHHHHhCCc
Q 039776 718 GVLSISD---PLKPGAHGVISILKSMQIRSILV-TGDNWGTAKSIASEVGIE 765 (922)
Q Consensus 718 G~~~~~d---~~r~~~~~~i~~l~~~gi~~~~~-tgd~~~~a~~ia~~~gi~ 765 (922)
.++.+.+ ...+-+.+..+.|+++|+++.+- ++++......-|...|++
T Consensus 3 ~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 3 VIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 4566777 77788899999999999998777 555666666777778875
No 330
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=26.54 E-value=5.3e+02 Score=33.46 Aligned_cols=122 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCceEEEeeecCCeEEEE--ecCCCCC---HHHHHHHHH--------hcCCcccccccccccccceeee
Q 039776 85 SSTVEKTFQAIQGVQNAHVTLATEEAEVH--YDPRILS---CNQLLKAIE--------DTGFEAIPISTGEDIVSKIHLH 151 (922)
Q Consensus 85 ~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~--~d~~~~~---~~~i~~~i~--------~~G~~~~~~~~~~~~~~~~~~~ 151 (922)
...+|+.++.++|+++.+..-..+...+. ++++.-. ..++.+.+. +....+...+.++....-..+.
T Consensus 73 t~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~d~~~a~~ev~~~i~~~~~~LP~~~~~~p~~~~~~~~~~pv~~~~ 152 (1040)
T PRK10503 73 TAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLA 152 (1040)
T ss_pred HHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCCChHHHHHHHHHHHHHHHHhCCCccCCCCEEEEeCCCCCceEEEE
Q ss_pred ecCCCch-----hhH-HHHHhhhccCCCeeEEEecCC-CceEEEEecCCC-----CChhhHHHHHHh
Q 039776 152 LDGLYTD-----HSV-TMIESSLQALPGVLDIDLDPS-IHKISISYKPAM-----TGPRNFIKMIES 206 (922)
Q Consensus 152 i~gm~c~-----~c~-~~ie~~l~~~~GV~~~~vn~~-~~~~~v~~~~~~-----~~~~~i~~~i~~ 206 (922)
+.+-.-+ .-+ +.++..|+++|||.++++.-. ...+.|.+||++ ++++++.+.++.
T Consensus 153 l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~~ai~~ 219 (1040)
T PRK10503 153 VTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITG 219 (1040)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
No 331
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=26.39 E-value=2.8e+02 Score=23.88 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHcc---CccccccCCccccccceEEE--EEEcCCCCCccHHHHHHHHhccCCceEEEee
Q 039776 38 PFFVNEETILEAIEGV---GFKATLVPGETIEKSTQVCR--IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVT 104 (922)
Q Consensus 38 ~~~~~~~~i~~~v~~~---gy~~~~~~~~~~~~~~~~~~--~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~ 104 (922)
...++++++.+.+++. ||...-...++......... ..++.-. .-...++..+++.+||+++.+.
T Consensus 14 s~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~--g~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 14 SPDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAE--GGTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred CCccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCC--cChHHHHHHHhcCCCccEEEEE
Confidence 4456788888887764 44333222233333333222 3333322 3348899999999999998875
No 332
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=26.28 E-value=1.6e+02 Score=38.03 Aligned_cols=121 Identities=14% Similarity=0.257 Sum_probs=71.0
Q ss_pred HHHHHHHhccCCceEEEeeecCCeE--EEEecCCCCCHHH----HHHHHHhcC--Cc--c---cccccccccccceeeee
Q 039776 86 STVEKTFQAIQGVQNAHVTLATEEA--EVHYDPRILSCNQ----LLKAIEDTG--FE--A---IPISTGEDIVSKIHLHL 152 (922)
Q Consensus 86 ~~ie~~l~~~~Gv~~~~v~~~~~~~--~v~~d~~~~~~~~----i~~~i~~~G--~~--~---~~~~~~~~~~~~~~~~i 152 (922)
..+|+.+..++|+.+++..-..+.. +++++.+. +.+. +.+.+...- .. + ...+.......-..+.+
T Consensus 63 ~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~~-d~~~a~~~v~~~i~~~~~~LP~~~~~p~i~~~~~~~~~i~~~~l 141 (1021)
T PF00873_consen 63 KPLEEALSSVEGVKEIRSTSREGSSSITVEFDDGT-DIDEALQEVREKIDQIRSDLPPGVEEPQIFKFDPSDSPIMILAL 141 (1021)
T ss_dssp HHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTTS--HHHHHHHHHHHHHHHGGGS-HHHHHHEEEEEEEECCEEEEEEE
T ss_pred HHHHHHHcCCCCeEEEEEEecCCcEEEEEEecccc-CHHHHHHHHHHHHHhhhhhCcccccCCceeeccCCCceeEEEEe
Confidence 5699999999999999887766665 45577653 4443 344444331 11 1 00111111112233444
Q ss_pred cCC---Cchh-----hHHHHHhhhccCCCeeEEEecC-CCceEEEEecCCC-----CChhhHHHHHHhh
Q 039776 153 DGL---YTDH-----SVTMIESSLQALPGVLDIDLDP-SIHKISISYKPAM-----TGPRNFIKMIEST 207 (922)
Q Consensus 153 ~gm---~c~~-----c~~~ie~~l~~~~GV~~~~vn~-~~~~~~v~~~~~~-----~~~~~i~~~i~~~ 207 (922)
.+- .... ..+.+++.|+++|||.++++.- ..+.+.|.+||++ +++.++.+++++.
T Consensus 142 ~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v~~~l~~~ 210 (1021)
T PF00873_consen 142 TSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDVAQALQAN 210 (1021)
T ss_dssp EESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHHHHHHHHh
Confidence 333 1211 2356889999999999999986 4567889999874 5788888888754
No 333
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=25.93 E-value=1.6e+02 Score=28.67 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=38.8
Q ss_pred EEEEECCEEEEEEEcCCCcchhH-------------------------HHHHHHHHHCCCEEEEEcCCC--HHHHHHHHH
Q 039776 708 ILVSVDGELTGVLSISDPLKPGA-------------------------HGVISILKSMQIRSILVTGDN--WGTAKSIAS 760 (922)
Q Consensus 708 l~v~~~~~~~G~~~~~d~~r~~~-------------------------~~~i~~l~~~gi~~~~~tgd~--~~~a~~ia~ 760 (922)
..+..|++++|++.++-.+-+.. +.++++.|+.|++-+++|-|. ..+.+.|-+
T Consensus 72 ~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~ 151 (174)
T COG3981 72 WAVDEDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEA 151 (174)
T ss_pred EEEecCCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHh
Confidence 34455789999999986654433 446788889999988888654 444445554
Q ss_pred HhCC
Q 039776 761 EVGI 764 (922)
Q Consensus 761 ~~gi 764 (922)
.-|+
T Consensus 152 NGGi 155 (174)
T COG3981 152 NGGI 155 (174)
T ss_pred cCCE
Confidence 4444
No 334
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=25.81 E-value=1.6e+02 Score=26.59 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEE
Q 039776 727 KPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVI 768 (922)
Q Consensus 727 r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~ 768 (922)
.+++.++++.+|++|.+++.+|++.. -...+.+.|...+.
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~~~~~ 95 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGVPVII 95 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCCcEEE
Confidence 47889999999999999999998764 34456655655444
No 335
>PTZ00445 p36-lilke protein; Provisional
Probab=25.77 E-value=1.5e+02 Score=30.10 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=44.6
Q ss_pred CcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH---HHh-CCceEEecCChhhHHHHHHHHHHcCCeEEEEcC
Q 039776 725 PLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIA---SEV-GIETVIAEAKPEQKAEKVEELQASGYTVAMVGD 795 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia---~~~-gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGD 795 (922)
..++.+...++.|++.||++++.==|+...+..-+ +.. +...+...++|+-|. +++.+++.|-.|+.|--
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~-~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKI-LGKRLKNSNIKISVVTF 99 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHH-HHHHHHHCCCeEEEEEc
Confidence 34566778889999999999988545544432211 111 223455567887665 68888887776666543
No 336
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.64 E-value=4.1e+02 Score=26.24 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=67.9
Q ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-----CCce--EEecCChhhHHHHHHHHHHcCCeEEEEcCCcccHHH
Q 039776 730 AHGVISILKSMQIRSILVTGDNWGTAKSIASEV-----GIET--VIAEAKPEQKAEKVEELQASGYTVAMVGDGINDSPA 802 (922)
Q Consensus 730 ~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~-----gi~~--~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~a 802 (922)
+.+.++...+.|.++.++ |..+.++...++.+ |+.. ...-.+|++..++++.+.+.+-.+++||=|.-=-+.
T Consensus 37 ~~~l~~~~~~~~~~vfll-G~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLY-GGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEI 115 (177)
T ss_pred HHHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHH
Confidence 356667777788888888 55555544444443 3331 122345677778999999999999999988543222
Q ss_pred H--Hh-----CCceEEecCCcHHH---HHhcCEEEeCCChhhHHHHHHHHHHHHHH
Q 039776 803 L--VA-----ADVGMAIGAGTDIA---IEAADIVLMKSNLEDEITAIDLSRKTFSR 848 (922)
Q Consensus 803 l--~~-----A~vgia~~~~~~~~---~~~ad~vl~~~~~~~l~~~i~~~r~~~~~ 848 (922)
. +. ..+.+++|.+=|.. ...|--.+.+-+++.+..++.+=|+..++
T Consensus 116 ~~~~~~~~~~~~v~~gvGg~fd~~aG~~~rAP~w~~~~gLEWlyRl~~eP~R~~R~ 171 (177)
T TIGR00696 116 WMRNHRHLKPDAVMIGVGGSFDVFSGLVKRAPRWLMRLGLEWLYRLRMEPWRWKRM 171 (177)
T ss_pred HHHHhHHhCCCcEEEEeceeeeecccCcCcCCHHHHHhCchHHHHhhhCcHHHHHh
Confidence 2 11 22445554321111 12223333345677788888777765443
No 337
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.61 E-value=3.3e+02 Score=29.04 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=34.0
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCc-ccHH---HHHhCC--ceEEecCCcH--HHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGI-NDSP---ALVAAD--VGMAIGAGTD--IAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~-nD~~---al~~A~--vgia~~~~~~--~~~~~ad~vl~~~ 830 (922)
+||..=.++++.... .|++|..+|.+. -=-| +|...+ |-+......+ .....||+++..-
T Consensus 134 cTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Av 203 (279)
T PRK14178 134 CTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAA 203 (279)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECC
Confidence 344444444444432 489999999993 3334 554444 4444443322 3446799998764
No 338
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=25.61 E-value=2.6e+02 Score=32.18 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC--ChhhH---HHHHHHHHHcCCeEEE
Q 039776 729 GAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA--KPEQK---AEKVEELQASGYTVAM 792 (922)
Q Consensus 729 ~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~--~p~~K---~~~v~~l~~~g~~v~~ 792 (922)
...+.=+.|++.|+++.+.+||.......+++++++..++... ++..+ ..+-+.|.+.|-.+..
T Consensus 56 sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~~ 124 (461)
T COG0415 56 SLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVHS 124 (461)
T ss_pred HHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCceEEE
Confidence 3455557788999999999999999999999999998888753 33332 2256667777754443
No 339
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=25.14 E-value=1.7e+02 Score=23.56 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=36.0
Q ss_pred eeeecCCCchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCCCChhhHHHHHHhhC
Q 039776 149 HLHLDGLYTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAMTGPRNFIKMIESTA 208 (922)
Q Consensus 149 ~~~i~gm~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g 208 (922)
.+.+.|+.||...-.+.+++..++. ++.+.|..|. ..+.+++....+..|
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~-~~~~~di~~~~~~~g 51 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDD-PAAVEDIPRWCEENG 51 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESS-TTHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECC-ccHHHHHHHHHHHCC
Confidence 5678899999999999999998643 2344455442 246788999999888
No 340
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.06 E-value=5.1e+02 Score=27.73 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=32.8
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCCceEEecC--CcH--HHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAADVGMAIGA--GTD--IAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~vgia~~~--~~~--~~~~~ad~vl~~~ 830 (922)
+||..=.++++.... .|++|+.+|.+.. =+.+|...+.-+.+.. ..+ .....||+++..-
T Consensus 141 cTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAv 210 (284)
T PRK14177 141 CTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAV 210 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeC
Confidence 344333344444332 4889999999844 2234444454454442 222 3456789988753
No 341
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.91 E-value=97 Score=32.28 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCeEEEEeecCCCCcceeEEecCCC-cCCCCEEEEcC
Q 039776 380 PEAATLLTMDEEGNVISEEEIDSRL-IQRNDVIKIIP 415 (922)
Q Consensus 380 ~~~~~v~r~~~~g~~~~~~~i~~~~-l~~GDiv~v~~ 415 (922)
+..+.++|.+.+|+. ....++..+ |+|||+|+|..
T Consensus 201 ~~~v~i~R~~~~g~~-~~~~~~~~~~l~~gDii~V~~ 236 (239)
T TIGR03028 201 ERGIRVMRRDDKGAV-EEVSGELGDLVQPDDVIYVRE 236 (239)
T ss_pred cceEEEEEECCCCcE-EEEecCCCcccCCCCEEEEeC
Confidence 467888887767763 133445444 89999998864
No 342
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=24.90 E-value=5.5e+02 Score=24.14 Aligned_cols=71 Identities=24% Similarity=0.214 Sum_probs=55.2
Q ss_pred EECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcC--CCHHHHHHHHHHhCCceEE--ecCChhhHHHHHHHHH
Q 039776 711 SVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTG--DNWGTAKSIASEVGIETVI--AEAKPEQKAEKVEELQ 784 (922)
Q Consensus 711 ~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tg--d~~~~a~~ia~~~gi~~~~--~~~~p~~K~~~v~~l~ 784 (922)
..+|+++-+...++--+. +.|+.+.+.|..+++.|- ..+.+++.++..+|-.-+. .+++-++|.++.+.+.
T Consensus 49 dL~G~~l~l~S~R~~~~~---evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly~P~~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 49 DLDGELLDLKSSRNMSRS---EVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLYTPERDLSVEEKQELAREYS 123 (138)
T ss_pred ecCCcEEEEEeecCCCHH---HHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcccCCCCcCCHHHHHHHHHhhC
Confidence 357788888777776554 567777889999999994 6688999999999865433 3678899999998875
No 343
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=24.85 E-value=3.3e+02 Score=27.97 Aligned_cols=99 Identities=26% Similarity=0.365 Sum_probs=56.4
Q ss_pred CCCcchhHHHHHHHHHHCCCEE--EEEcCCCHHHHHH-------------HHHHhCCceEE-ecCChhhHHHHHHHHHHc
Q 039776 723 SDPLKPGAHGVISILKSMQIRS--ILVTGDNWGTAKS-------------IASEVGIETVI-AEAKPEQKAEKVEELQAS 786 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~--~~~tgd~~~~a~~-------------ia~~~gi~~~~-~~~~p~~K~~~v~~l~~~ 786 (922)
+..+.+...+.|++|.+.|+.+ .++||+-..-... ++.-.+-..+- --..|+|.....++.+..
T Consensus 69 ~~~v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~~l 148 (221)
T PF07302_consen 69 KKKVEPRLQACIAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQPL 148 (221)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHHhc
Confidence 5667788899999999999986 4889985422111 11111111110 112456666677777776
Q ss_pred CCeEEEEcCC-c-ccHHHHHhCCceEEecCCcHHHHHhcCEEEeC
Q 039776 787 GYTVAMVGDG-I-NDSPALVAADVGMAIGAGTDIAIEAADIVLMK 829 (922)
Q Consensus 787 g~~v~~vGDg-~-nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~ 829 (922)
+..+.+.--. . .|...+.+| +.+...+.||+|+++
T Consensus 149 ~~~~~~a~asPy~~~~~~l~~A--------a~~L~~~gadlIvLD 185 (221)
T PF07302_consen 149 GNPVVVAAASPYEGDEEELAAA--------ARELAEQGADLIVLD 185 (221)
T ss_pred CCCeEEEEeCCCCCCHHHHHHH--------HHHHHhcCCCEEEEE
Confidence 6554444322 2 355555443 344445678888876
No 344
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=24.57 E-value=4.1e+02 Score=34.46 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=72.4
Q ss_pred HHHHHHHhccCCceEEEeeec-C--CeEEEEecCCCCCHH----HHHHHHHhcC--Ccc--c---ccccccccccceeee
Q 039776 86 STVEKTFQAIQGVQNAHVTLA-T--EEAEVHYDPRILSCN----QLLKAIEDTG--FEA--I---PISTGEDIVSKIHLH 151 (922)
Q Consensus 86 ~~ie~~l~~~~Gv~~~~v~~~-~--~~~~v~~d~~~~~~~----~i~~~i~~~G--~~~--~---~~~~~~~~~~~~~~~ 151 (922)
..+|+.+..++|+.+++..-. . ....++++++. +.+ ++.+.+.... +.. . +.........-..+.
T Consensus 63 ~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g~-d~~~a~~~V~~~i~~~~~~LP~~~~~~~~~~~~~~~~~v~~~~ 141 (1049)
T PRK15127 63 QVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGT-DADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVG 141 (1049)
T ss_pred HHHHHHhcCCCCceEEEEEecCCceEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcccCCCcEEecCCCCceEEEE
Confidence 468999999999999986542 3 34667777653 443 3444444321 211 1 000000000112333
Q ss_pred ecC----CCch-hh---HHHHHhhhccCCCeeEEEecCCCceEEEEecCCC-----CChhhHHHHHHh
Q 039776 152 LDG----LYTD-HS---VTMIESSLQALPGVLDIDLDPSIHKISISYKPAM-----TGPRNFIKMIES 206 (922)
Q Consensus 152 i~g----m~c~-~c---~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~-----~~~~~i~~~i~~ 206 (922)
+.+ +.-. -+ .+.++..|+++|||.++++.-..+.+.|..||.+ +++.++.+.++.
T Consensus 142 l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~~ 209 (1049)
T PRK15127 142 VINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKA 209 (1049)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 322 1111 11 2568899999999999999877667899999874 578888888873
No 345
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=24.53 E-value=6.8e+02 Score=25.78 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=21.8
Q ss_pred HHHHHHHcCCe-EEEEcCCc-ccHHHHHhCCce
Q 039776 779 KVEELQASGYT-VAMVGDGI-NDSPALVAADVG 809 (922)
Q Consensus 779 ~v~~l~~~g~~-v~~vGDg~-nD~~al~~A~vg 809 (922)
+.+.+...... ++||||.. +|+.+.+.+++-
T Consensus 197 ~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~ 229 (236)
T TIGR01460 197 ALNLLQARPERRDVMVGDNLRTDILGAKNAGFD 229 (236)
T ss_pred HHHHhCCCCccceEEECCCcHHHHHHHHHCCCc
Confidence 44444333334 49999998 899999998854
No 346
>PLN02389 biotin synthase
Probab=24.42 E-value=4.6e+02 Score=29.44 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=54.0
Q ss_pred cchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEe--------------cCChhhHHHHHHHHHHcCCeE-
Q 039776 726 LKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIA--------------EAKPEQKAEKVEELQASGYTV- 790 (922)
Q Consensus 726 ~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~--------------~~~p~~K~~~v~~l~~~g~~v- 790 (922)
..+.+.++++.+|+.|+.+..-.|-.........++.|++.+.. .-+.+++.+.++.+++.|-.|
T Consensus 151 ~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 151 NFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVC 230 (379)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEe
Confidence 35788999999999999988777877777777778889974432 235677788999999888654
Q ss_pred --EEEcCCcc
Q 039776 791 --AMVGDGIN 798 (922)
Q Consensus 791 --~~vGDg~n 798 (922)
+++|=|-.
T Consensus 231 sg~IiGlgEt 240 (379)
T PLN02389 231 SGGIIGLGEA 240 (379)
T ss_pred EEEEECCCCC
Confidence 34555543
No 347
>PRK15108 biotin synthase; Provisional
Probab=24.14 E-value=5.5e+02 Score=28.39 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceE----------EecC----ChhhHHHHHHHHHHcCCeEE--
Q 039776 728 PGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETV----------IAEA----KPEQKAEKVEELQASGYTVA-- 791 (922)
Q Consensus 728 ~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~----------~~~~----~p~~K~~~v~~l~~~g~~v~-- 791 (922)
+...++++.+|+.|+.+.+--|.-......-.++.|++.+ |.++ +.+++.+.++.+++.|..+.
T Consensus 111 e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg 190 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG 190 (345)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeE
Confidence 6788999999999998765556655666666678899832 3333 45677888888888886544
Q ss_pred -EEcCCccc
Q 039776 792 -MVGDGIND 799 (922)
Q Consensus 792 -~vGDg~nD 799 (922)
++|=|..+
T Consensus 191 ~i~GlgEt~ 199 (345)
T PRK15108 191 GIVGLGETV 199 (345)
T ss_pred EEEeCCCCH
Confidence 67776554
No 348
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=24.07 E-value=1.1e+02 Score=28.60 Aligned_cols=55 Identities=29% Similarity=0.413 Sum_probs=39.8
Q ss_pred CCCCEEEEcC-CCe--eeceEEEEe--------------cc-e----eeecccccCCCcccccCCCCeeecCccccc
Q 039776 406 QRNDVIKIIP-GAK--VASDGYVLW--------------GK-S----YVNESMITGEAWPVAKREGDTVTGGTLNEN 460 (922)
Q Consensus 406 ~~GDiv~v~~-G~~--iPaD~~vl~--------------g~-~----~vdes~lTGEs~pv~k~~g~~v~~Gs~~~~ 460 (922)
-.||=+-|.| ++. -|+||.|.. |- . -+|+..|.||-.-...+.|+.|-+|..+.+
T Consensus 28 ~lG~GvaI~p~~~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~ 104 (132)
T PF00358_consen 28 MLGDGVAIIPSDGKVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIE 104 (132)
T ss_dssp SSSEEEEEEESSSEEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEE
T ss_pred CCcCEEEEEcCCCeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEE
Confidence 4677777766 333 399999984 21 1 179999999998888899999999987653
No 349
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=24.00 E-value=1.5e+02 Score=32.19 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=47.6
Q ss_pred CcchhHHHHHHHHHHC---CCEEEEEcCCCHHHHHHHHHHhCCceEEe-------cCChhhHHHHHHHHHHcCCeEEEEc
Q 039776 725 PLKPGAHGVISILKSM---QIRSILVTGDNWGTAKSIASEVGIETVIA-------EAKPEQKAEKVEELQASGYTVAMVG 794 (922)
Q Consensus 725 ~~r~~~~~~i~~l~~~---gi~~~~~tgd~~~~a~~ia~~~gi~~~~~-------~~~p~~K~~~v~~l~~~g~~v~~vG 794 (922)
.+.|+..++++..+.. |+.+...+.|+...+++++.- |-..+.- +. +-.+...++...+....-.++|
T Consensus 178 ~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~-g~~avmPl~~pIGsg~-gv~~p~~i~~~~e~~~vpVivd 255 (326)
T PRK11840 178 TLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA-GAVAVMPLGAPIGSGL-GIQNPYTIRLIVEGATVPVLVD 255 (326)
T ss_pred CcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc-CCEEEeeccccccCCC-CCCCHHHHHHHHHcCCCcEEEe
Confidence 4567788888888877 999988888899999988854 5422211 11 1125566666666555666777
Q ss_pred CCcc
Q 039776 795 DGIN 798 (922)
Q Consensus 795 Dg~n 798 (922)
-|+-
T Consensus 256 AGIg 259 (326)
T PRK11840 256 AGVG 259 (326)
T ss_pred CCCC
Confidence 6655
No 350
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.81 E-value=2.6e+02 Score=23.07 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=29.9
Q ss_pred EEEcCCCcchhHHHHHHHHHHCCCEEEEEc-CCCHHHHHHHHHHhCC
Q 039776 719 VLSISDPLKPGAHGVISILKSMQIRSILVT-GDNWGTAKSIASEVGI 764 (922)
Q Consensus 719 ~~~~~d~~r~~~~~~i~~l~~~gi~~~~~t-gd~~~~a~~ia~~~gi 764 (922)
++.+.+..++.+.+..+.||+.|+++.+.. +.+.......|+..|+
T Consensus 6 i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~ 52 (91)
T cd00859 6 VVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGA 52 (91)
T ss_pred EEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCC
Confidence 344566677788888999999999886643 3344444444544444
No 351
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=23.78 E-value=8e+02 Score=26.25 Aligned_cols=100 Identities=20% Similarity=0.242 Sum_probs=73.8
Q ss_pred EEEEEcCCCcchhHHHHHHHHHHCC----CE----EEEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHcCC
Q 039776 717 TGVLSISDPLKPGAHGVISILKSMQ----IR----SILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQASGY 788 (922)
Q Consensus 717 ~G~~~~~d~~r~~~~~~i~~l~~~g----i~----~~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~ 788 (922)
++++.=.-...++..+.++.|++.. ++ ++-.|-+....++.+|+++.+--+.+.-+..+=.++.+-.++.|.
T Consensus 156 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~ 235 (280)
T TIGR00216 156 LGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGP 235 (280)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCC
Confidence 5666655566778889999999876 22 357788999999999999988888887766666677777777787
Q ss_pred eEEEEcCCcc-cHHHHHhCC-ceEEecCCc
Q 039776 789 TVAMVGDGIN-DSPALVAAD-VGMAIGAGT 816 (922)
Q Consensus 789 ~v~~vGDg~n-D~~al~~A~-vgia~~~~~ 816 (922)
.+..|.+-.. |...|+..+ |||.-|.++
T Consensus 236 ~t~~Ie~~~el~~~~l~~~~~VGiTAGAST 265 (280)
T TIGR00216 236 PSYLIETAEELPEEWLKGVKVVGITAGAST 265 (280)
T ss_pred CEEEECChHHCCHHHhCCCCEEEEEecCCC
Confidence 7888866532 556776554 788877443
No 352
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=23.46 E-value=1.6e+02 Score=32.42 Aligned_cols=86 Identities=24% Similarity=0.334 Sum_probs=54.0
Q ss_pred ECCEEEEEEEcCCCcchhHHHHHHHHHH---CCCEEEEEc-CCCHHHHHHHHHHhCCc--eEEecCChhhHHHHHHHHHH
Q 039776 712 VDGELTGVLSISDPLKPGAHGVISILKS---MQIRSILVT-GDNWGTAKSIASEVGIE--TVIAEAKPEQKAEKVEELQA 785 (922)
Q Consensus 712 ~~~~~~G~~~~~d~~r~~~~~~i~~l~~---~gi~~~~~t-gd~~~~a~~ia~~~gi~--~~~~~~~p~~K~~~v~~l~~ 785 (922)
.|.+.+|.+-++ |+...+.+|.. ..-.++=.| |.+..-...-|+.+|+. .++-..+|.+|.+-++.+
T Consensus 47 E~lQ~~gSFK~R-----GA~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~-- 119 (347)
T COG1171 47 ENLQPVGSFKIR-----GAYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGY-- 119 (347)
T ss_pred ccCcccccchhh-----hHHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhc--
Confidence 445555555443 23344444431 122244444 55555667778889997 455688999997766654
Q ss_pred cCCeEEEEcCCcccHHHHHh
Q 039776 786 SGYTVAMVGDGINDSPALVA 805 (922)
Q Consensus 786 ~g~~v~~vGDg~nD~~al~~ 805 (922)
|..|...||..+|+.+...
T Consensus 120 -GaeVil~g~~~dda~~~a~ 138 (347)
T COG1171 120 -GAEVILHGDNFDDAYAAAE 138 (347)
T ss_pred -CCEEEEECCCHHHHHHHHH
Confidence 7788888998888776543
No 353
>PRK04435 hypothetical protein; Provisional
Probab=23.22 E-value=3e+02 Score=26.23 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=48.8
Q ss_pred EEecCCeEEEEEc--CCCCCHHHHHHHHHccCccccccCCccccccceEEEEEEcCCCCCccHHHHHHHHhccCCceEEE
Q 039776 25 VDVLNNRAQVLFY--PFFVNEETILEAIEGVGFKATLVPGETIEKSTQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAH 102 (922)
Q Consensus 25 v~~~~~~~~v~~~--~~~~~~~~i~~~v~~~gy~~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~ 102 (922)
-...++.+++... ...-.+.++.+.+.+.|-.+.......+..+.....+.++--+.......+-..|++++||.+++
T Consensus 63 ~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~ 142 (147)
T PRK04435 63 EMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVE 142 (147)
T ss_pred ccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEE
Confidence 3445566666552 22334788999999888776544332222222345555554444446678899999999999887
Q ss_pred e
Q 039776 103 V 103 (922)
Q Consensus 103 v 103 (922)
+
T Consensus 143 i 143 (147)
T PRK04435 143 L 143 (147)
T ss_pred E
Confidence 5
No 354
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=23.19 E-value=1.5e+03 Score=29.62 Aligned_cols=15 Identities=0% Similarity=0.355 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHh
Q 039776 352 SFILLGKYLEVLAKG 366 (922)
Q Consensus 352 ~~~~~~~~~e~~~~~ 366 (922)
+..++.+++..-.|+
T Consensus 716 ~y~~~~R~l~i~~RR 730 (1109)
T PRK10929 716 VYHIIRRWMLIQRRR 730 (1109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334566666654444
No 355
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=23.19 E-value=3.8e+02 Score=29.49 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=66.5
Q ss_pred HhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC---ChhhH
Q 039776 700 TEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA---KPEQK 776 (922)
Q Consensus 700 ~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~---~p~~K 776 (922)
..+.|..++++..+..-+ .-.+.+.++++.|.+. ..++++-.........+|+..+++.+-+.- -|-|=
T Consensus 68 ~~~LGg~~i~l~~~~ss~-------~kgEsl~DTarvls~y-~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQa 139 (334)
T PRK01713 68 AYDQGAQVTYIDPNSSQI-------GHKESMKDTARVLGRM-YDAIEYRGFKQSIVNELAEYAGVPVFNGLTDEFHPTQM 139 (334)
T ss_pred HHHcCCeEEEcCCccccC-------CCCcCHHHHHHHHHHh-CCEEEEEcCchHHHHHHHHhCCCCEEECCCCCCChHHH
Confidence 455677777663322111 2257788899999888 777777777888899999999998776632 12221
Q ss_pred -HH---HHHHHH--HcCCeEEEEcCCcc-----cHHHHHhCCceEEec
Q 039776 777 -AE---KVEELQ--ASGYTVAMVGDGIN-----DSPALVAADVGMAIG 813 (922)
Q Consensus 777 -~~---~v~~l~--~~g~~v~~vGDg~n-----D~~al~~A~vgia~~ 813 (922)
++ +.+... -+|.+|+++||+.| .+.++..-++-+.+.
T Consensus 140 L~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~ 187 (334)
T PRK01713 140 LADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRIC 187 (334)
T ss_pred HHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEE
Confidence 22 222221 24678999999844 344555555555544
No 356
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.14 E-value=7e+02 Score=24.20 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=52.5
Q ss_pred chHHHHHHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHh---CCceE
Q 039776 692 DTEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGT-AKSIASEV---GIETV 767 (922)
Q Consensus 692 ~~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~-a~~ia~~~---gi~~~ 767 (922)
+++...+.+...|.-.+.-++...+. . ....+.|+..|++++...|+.... +......+ .++.+
T Consensus 42 d~~~i~~~ls~~G~i~~~R~Y~~a~a---------~---~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~ 109 (160)
T TIGR00288 42 DLDEIREILSEYGDIKIGKVLLNQYA---------S---DKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAV 109 (160)
T ss_pred CHHHHHHHHHhcCCeEEEEEEechhc---------c---HHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEE
Confidence 35566677777776444333321110 1 245788999999998888854321 22222111 22322
Q ss_pred EecCChhhHHHHHHHHHHcCCeEEEEcCC
Q 039776 768 IAEAKPEQKAEKVEELQASGYTVAMVGDG 796 (922)
Q Consensus 768 ~~~~~p~~K~~~v~~l~~~g~~v~~vGDg 796 (922)
.---...+=..+++.+++.|.+|..+|-.
T Consensus 110 vLvSgD~DF~~Lv~~lre~G~~V~v~g~~ 138 (160)
T TIGR00288 110 ALVTRDADFLPVINKAKENGKETIVIGAE 138 (160)
T ss_pred EEEeccHhHHHHHHHHHHCCCEEEEEeCC
Confidence 22222345567888899999888888753
No 357
>PRK09577 multidrug efflux protein; Reviewed
Probab=23.12 E-value=5.5e+02 Score=33.28 Aligned_cols=119 Identities=8% Similarity=0.180 Sum_probs=70.1
Q ss_pred HHHHHHHhccCCceEEEeeecCC--eEEEEecCCCCCHH----HHHHHHHhcC--Cc--cc---c-c-ccccccccceee
Q 039776 86 STVEKTFQAIQGVQNAHVTLATE--EAEVHYDPRILSCN----QLLKAIEDTG--FE--AI---P-I-STGEDIVSKIHL 150 (922)
Q Consensus 86 ~~ie~~l~~~~Gv~~~~v~~~~~--~~~v~~d~~~~~~~----~i~~~i~~~G--~~--~~---~-~-~~~~~~~~~~~~ 150 (922)
..+|+.+..++|+.+.+..-..+ ...++++++. +.+ ++.+.+.... .. +. + . +..+. ....+
T Consensus 63 ~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~~~~~~~~~~~~~~~--~~~~~ 139 (1032)
T PRK09577 63 ALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGV-NADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADN--IQLIV 139 (1032)
T ss_pred HHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCcccccCCceEeccCCC--ceEEE
Confidence 46899999999999877654444 4455676654 333 3444443321 11 11 0 0 11111 11223
Q ss_pred eecC----CCch---h-hHHHHHhhhccCCCeeEEEecCCCceEEEEecCCC-----CChhhHHHHHHhh
Q 039776 151 HLDG----LYTD---H-SVTMIESSLQALPGVLDIDLDPSIHKISISYKPAM-----TGPRNFIKMIEST 207 (922)
Q Consensus 151 ~i~g----m~c~---~-c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~-----~~~~~i~~~i~~~ 207 (922)
.+.+ ..-. . -.+.++..|+++|||.++++.-....+.|..||.+ +++.++.+.++..
T Consensus 140 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~~ 209 (1032)
T PRK09577 140 SLTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRAH 209 (1032)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 3322 1111 1 13578899999999999999876666778788864 5778888888754
No 358
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=23.04 E-value=2.9e+02 Score=29.28 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=62.8
Q ss_pred HHHHHHHHCCCEE-----EEEcCCCHHHHHHHHHHhCCceEEecCChhhHHHHHHHHHHc-CCeEEEEcCCcccHHHHHh
Q 039776 732 GVISILKSMQIRS-----ILVTGDNWGTAKSIASEVGIETVIAEAKPEQKAEKVEELQAS-GYTVAMVGDGINDSPALVA 805 (922)
Q Consensus 732 ~~i~~l~~~gi~~-----~~~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~ 805 (922)
+.++++.+.|+++ .+=.|+....+-.+....-...+|++.+|.+..++....+++ +..|.+.| ..+|..+...
T Consensus 162 ~i~~q~~E~G~~lg~~~~lvp~G~~ts~~H~~g~AiRaAliFggv~pGn~~ei~dY~~nRV~Afv~A~G-~~s~~~~A~a 240 (287)
T cd01917 162 EIVEQLLEENVKLGLDYIAYPLGNFTQAIHAANYALRAGLMFGGIEPGKREEIRDYQRRRVRAFVLYLG-ELDMVKTAAA 240 (287)
T ss_pred HHHHHHHHcCCeeccceeEeecCchhhHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhhcCEEEEecc-ccCHHHHHHH
Confidence 3667777777654 234575444333333333344689999998888888887765 66777888 4455444333
Q ss_pred CC---ce--EEecCCcHHHHHhcCEEEeCCChhhHHHHHHHHH
Q 039776 806 AD---VG--MAIGAGTDIAIEAADIVLMKSNLEDEITAIDLSR 843 (922)
Q Consensus 806 A~---vg--ia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r 843 (922)
++ .| +-........++.-+.++.+.+.+.+..--.+.|
T Consensus 241 aGai~~GfPVI~d~~~pei~~~P~~~~~~~~~d~iv~~alE~R 283 (287)
T cd01917 241 AGAIFTGFPVITDQELPEDKQIPDWFFSSSDYDKIVQNALEMR 283 (287)
T ss_pred hhHHHcCCCEEeCCCCcccccCccceecCCCHHHHHHHHHHhc
Confidence 33 22 2221222222234466777777777665433343
No 359
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=23.01 E-value=4.2e+02 Score=34.38 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCceEEEeeec---CCeEEEEecCCC---CCHHHHHHHHHhc------C-Ccccccccccccccceeee
Q 039776 85 SSTVEKTFQAIQGVQNAHVTLA---TEEAEVHYDPRI---LSCNQLLKAIEDT------G-FEAIPISTGEDIVSKIHLH 151 (922)
Q Consensus 85 ~~~ie~~l~~~~Gv~~~~v~~~---~~~~~v~~d~~~---~~~~~i~~~i~~~------G-~~~~~~~~~~~~~~~~~~~ 151 (922)
...+|+.+..++|+.+.+.... .....+.++++. ....++.+.+... + ..+.+.........-..+.
T Consensus 62 t~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~d~~~a~~~v~~~l~~~~~~LP~~~~~~~~~~~~~~~~~~~~i~ 141 (1044)
T TIGR00915 62 TQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVIG 141 (1044)
T ss_pred HHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCCChHHHHHHHHHHHHHHHhhCCCcccCCCcEEeCCCCCceEEEE
Q ss_pred ecCC--------CchhhHHHHHhhhccCCCeeEEEecCCCceEEEEecCCC-----CChhhHHHHHHh
Q 039776 152 LDGL--------YTDHSVTMIESSLQALPGVLDIDLDPSIHKISISYKPAM-----TGPRNFIKMIES 206 (922)
Q Consensus 152 i~gm--------~c~~c~~~ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~-----~~~~~i~~~i~~ 206 (922)
+.+- -...-.+.++..|+++|||.++++.-....+.|..||++ +++.++.+.++.
T Consensus 142 l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~dV~~~i~~ 209 (1044)
T TIGR00915 142 LVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAIQA 209 (1044)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
No 360
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=22.96 E-value=3.3e+02 Score=21.07 Aligned_cols=66 Identities=8% Similarity=0.044 Sum_probs=41.0
Q ss_pred EEEEcCCCCCHHHHHHHHHccCccccccCCcccc-ccceEEEEEEcCCCCCccHHHHHHHHhccCCceEEE
Q 039776 33 QVLFYPFFVNEETILEAIEGVGFKATLVPGETIE-KSTQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAH 102 (922)
Q Consensus 33 ~v~~~~~~~~~~~i~~~v~~~gy~~~~~~~~~~~-~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~ 102 (922)
.+..+...-...++.+.+.+.|..+.-....... .+.....+.+++.. ...+.+.|++.+||.++.
T Consensus 3 ~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~----~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 3 LIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPV----PEEVLEELKALPGIIRVR 69 (71)
T ss_pred EEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCC----CHHHHHHHHcCCCeEEEE
Confidence 4455444455788889998888776432222211 13334566665532 457888899999998865
No 361
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=22.95 E-value=5.4e+02 Score=28.50 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=33.4
Q ss_pred CCCcchhHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHhCCceEEecC
Q 039776 723 SDPLKPGAHGVISILKSMQIRSILVTGDN---WGTAKSIASEVGIETVIAEA 771 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~gi~~~~~tgd~---~~~a~~ia~~~gi~~~~~~~ 771 (922)
|--++++..+.++.+++.|+.+.+.|.-. .+.+..+. +.|++.+.-.+
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~-~~g~~~v~iSl 113 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALA-DAGLDHVQLSF 113 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHH-hCCCCEEEEeC
Confidence 33357889999999999999999998654 33444444 46776555443
No 362
>PRK00208 thiG thiazole synthase; Reviewed
Probab=22.90 E-value=8.9e+02 Score=25.33 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=49.6
Q ss_pred CCCcchhHHHHHHHHHHC---CCEEEEEcCCCHHHHHHHHHHhCCceEEe-------cCChhhHHHHHHHHHHcCCeEEE
Q 039776 723 SDPLKPGAHGVISILKSM---QIRSILVTGDNWGTAKSIASEVGIETVIA-------EAKPEQKAEKVEELQASGYTVAM 792 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~---gi~~~~~tgd~~~~a~~ia~~~gi~~~~~-------~~~p~~K~~~v~~l~~~g~~v~~ 792 (922)
.+.+.|+..++++..+.. |+.++-.+-|+...+++++.. |-+.+.- +. +-...+.++.+.+.-..-.+
T Consensus 102 ~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~-G~~~vmPlg~pIGsg~-gi~~~~~i~~i~e~~~vpVI 179 (250)
T PRK00208 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA-GCAAVMPLGAPIGSGL-GLLNPYNLRIIIEQADVPVI 179 (250)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCCCcCCCCCC-CCCCHHHHHHHHHhcCCeEE
Confidence 445679999999988888 999996666788888887754 7654421 11 11125557777765444556
Q ss_pred EcCCccc
Q 039776 793 VGDGIND 799 (922)
Q Consensus 793 vGDg~nD 799 (922)
++-|+.-
T Consensus 180 veaGI~t 186 (250)
T PRK00208 180 VDAGIGT 186 (250)
T ss_pred EeCCCCC
Confidence 6767653
No 363
>PRK08508 biotin synthase; Provisional
Probab=22.74 E-value=6.9e+02 Score=26.62 Aligned_cols=77 Identities=14% Similarity=0.057 Sum_probs=51.8
Q ss_pred CCCcchhHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCceEEe--------------cCChhhHHHHHHHHHHc
Q 039776 723 SDPLKPGAHGVISILKSMQ--IRSILVTGDNWGTAKSIASEVGIETVIA--------------EAKPEQKAEKVEELQAS 786 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~g--i~~~~~tgd~~~~a~~ia~~~gi~~~~~--------------~~~p~~K~~~v~~l~~~ 786 (922)
.|+.-+.+.++++.+|+.+ +.++...|..........++.|++.+.. .-+++++.+.++..++.
T Consensus 70 ~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~ 149 (279)
T PRK08508 70 DDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEA 149 (279)
T ss_pred CcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHc
Confidence 3444466788889998875 4555567877777777777888874432 23456778888888887
Q ss_pred CCe---EEEEcCCccc
Q 039776 787 GYT---VAMVGDGIND 799 (922)
Q Consensus 787 g~~---v~~vGDg~nD 799 (922)
|-. ..++|-|-++
T Consensus 150 Gi~v~sg~I~GlGEt~ 165 (279)
T PRK08508 150 GLGLCSGGIFGLGESW 165 (279)
T ss_pred CCeecceeEEecCCCH
Confidence 744 3566766543
No 364
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.53 E-value=4.6e+02 Score=30.49 Aligned_cols=121 Identities=21% Similarity=0.316 Sum_probs=63.6
Q ss_pred hHHHHHHHhccCceEEEEE-ECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEE---EEEcCCCHHHHHHHHHHhCCceEE
Q 039776 693 TEEMLTETEGMAQTEILVS-VDGELTGVLSISDPLKPGAHGVISILKSMQIRS---ILVTGDNWGTAKSIASEVGIETVI 768 (922)
Q Consensus 693 ~~~~~~~~~~~~~~~l~v~-~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~---~~~tgd~~~~a~~ia~~~gi~~~~ 768 (922)
..+.++.+.+.+...+.|- .+++++|++...|-++.........-+. -..+ .-++.+..+.+..+.+ .|++.+.
T Consensus 167 L~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g-~l~V~aav~~~~~~~~~a~~Lv~-aGvd~i~ 244 (479)
T PRK07807 167 PREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAG-RLRVAAAVGINGDVAAKARALLE-AGVDVLV 244 (479)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhh-ccchHhhhccChhHHHHHHHHHH-hCCCEEE
Confidence 4455555555555555444 4689999999998777443332221111 1111 1123344455555544 5666655
Q ss_pred ecCCh---hhHHHHHHHHHHcC-CeEEEEcCCcc--cHHHHHhCC---ceEEecCC
Q 039776 769 AEAKP---EQKAEKVEELQASG-YTVAMVGDGIN--DSPALVAAD---VGMAIGAG 815 (922)
Q Consensus 769 ~~~~p---~~K~~~v~~l~~~g-~~v~~vGDg~n--D~~al~~A~---vgia~~~~ 815 (922)
-+.+. ..-.+.++.++++. +.-.|.||=.+ .+..+-.|+ |+|++|.|
T Consensus 245 ~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~g 300 (479)
T PRK07807 245 VDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPG 300 (479)
T ss_pred EeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCC
Confidence 54433 23355677777763 45556666543 344444454 45556654
No 365
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.17 E-value=2.5e+02 Score=22.65 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=39.9
Q ss_pred EEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCcccc
Q 039776 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIP 137 (922)
Q Consensus 74 ~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~ 137 (922)
+...|..|+.-.-+.++++++++. .+.+.|..|.+ .+.+.+....+..||+...
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~---------G~~l~V~~d~~-~s~~ni~~~~~~~g~~v~~ 55 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKP---------GEILEVISDCP-QSINNIPIDARNHGYKVLA 55 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEecCc-hHHHHHHHHHHHcCCEEEE
Confidence 346789999999999999998852 23344545544 3678899999999998754
No 366
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=22.09 E-value=3.8e+02 Score=28.91 Aligned_cols=70 Identities=24% Similarity=0.420 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCc---eEEecCChhhHHHHHHHHHHcCCeEEEEcCCcccH-HHHHhC------CceEEecCCcHHHHH
Q 039776 752 WGTAKSIASEVGIE---TVIAEAKPEQKAEKVEELQASGYTVAMVGDGINDS-PALVAA------DVGMAIGAGTDIAIE 821 (922)
Q Consensus 752 ~~~a~~ia~~~gi~---~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~-~al~~A------~vgia~~~~~~~~~~ 821 (922)
.+.-+.+|+.+|.. -..+=+.-+...++|+.+++.|-+|-.+.|| |+ .++..+ |+=+..|++.+-...
T Consensus 142 ~eNl~~~A~algk~v~dltV~vLdRpRH~~lI~eiR~~Gari~Li~DG--DVa~ai~~~~~~s~vD~~~GiGGaPEGVla 219 (319)
T PRK09479 142 AENLRAVAKALGKDVSDLTVVVLDRPRHEELIAEIREAGARVKLISDG--DVAGAIATAFPDTGVDILMGIGGAPEGVLA 219 (319)
T ss_pred HHHHHHHHHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEeccc--cHHHHHHHhcCCCCeeEEEEcCcChHHHHH
Q ss_pred hc
Q 039776 822 AA 823 (922)
Q Consensus 822 ~a 823 (922)
+|
T Consensus 220 Aa 221 (319)
T PRK09479 220 AA 221 (319)
T ss_pred HH
No 367
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.04 E-value=3.2e+02 Score=21.98 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=39.7
Q ss_pred EEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCcccc
Q 039776 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIP 137 (922)
Q Consensus 74 ~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~ 137 (922)
+...|..|+.-.-...+++++++- .+.+.|..|.+. +.+.+....+..||+...
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~~-s~~di~~~~~~~g~~~~~ 55 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDPS-TTRDIPKFCTFLGHELLA 55 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCCc-hHHHHHHHHHHcCCEEEE
Confidence 345789999999999999988742 234455555443 678899999999998754
No 368
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=21.97 E-value=2.5e+02 Score=22.36 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=36.5
Q ss_pred EEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCccc
Q 039776 74 IRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAI 136 (922)
Q Consensus 74 ~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~ 136 (922)
+.+.|+.|+...-...+++ ++.. .+.+.+..|.+ .+.+.+....+..||+..
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~-~s~~~i~~~~~~~G~~~~ 53 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNE-VAKENVSRFAESRGYEVS 53 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcCh-hHHHHHHHHHHHcCCEEE
Confidence 4567999999999999998 5532 22344444433 246788999999999874
No 369
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=21.93 E-value=4.1e+02 Score=28.62 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=49.4
Q ss_pred CCCcchhHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHhC-CceEEecCChhhH---------------HHHHHH---
Q 039776 723 SDPLKPGAHGVISILKSMQ-IRSILVTGDNWGTAKSIASEVG-IETVIAEAKPEQK---------------AEKVEE--- 782 (922)
Q Consensus 723 ~d~~r~~~~~~i~~l~~~g-i~~~~~tgd~~~~a~~ia~~~g-i~~~~~~~~p~~K---------------~~~v~~--- 782 (922)
|-.+.+...+.|+.+|+.| +.+.++|.-... .+.+.+. .+.++..+..-++ .++++.
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslp---dv~~~L~~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~ 166 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLP---DVLEELKLPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEI 166 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChH---HHHHHhccCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 4458899999999999999 799999987773 3444443 4555554432211 123333
Q ss_pred HHH--cCCeEE--EEcCCcccHH
Q 039776 783 LQA--SGYTVA--MVGDGINDSP 801 (922)
Q Consensus 783 l~~--~g~~v~--~vGDg~nD~~ 801 (922)
+++ .|..|. |+..|.||..
T Consensus 167 ~~~~~~~~~vir~tlvkg~N~~~ 189 (296)
T COG0731 167 FRSEYKGRTVIRTTLVKGINDDE 189 (296)
T ss_pred hhhcCCCcEEEEEEEeccccCCh
Confidence 333 455554 8899999866
No 370
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=21.91 E-value=5.3e+02 Score=28.61 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=26.3
Q ss_pred cCCeEEEEcCCcc----cHHHHHhCCceEEec--CCc--HHHHHhcCEEEeCC
Q 039776 786 SGYTVAMVGDGIN----DSPALVAADVGMAIG--AGT--DIAIEAADIVLMKS 830 (922)
Q Consensus 786 ~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~--~~~~~~ad~vl~~~ 830 (922)
+|++|+.||.+.. =+.+|...+.-|.+. ... ......||+++..-
T Consensus 230 ~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAv 282 (364)
T PLN02616 230 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAV 282 (364)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcC
Confidence 4889999999843 223444445444443 222 23346789888753
No 371
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=21.69 E-value=5.1e+02 Score=22.05 Aligned_cols=10 Identities=40% Similarity=0.335 Sum_probs=3.9
Q ss_pred hhHHHHHHHH
Q 039776 366 GKTSEAIAKL 375 (922)
Q Consensus 366 ~~~~~~l~~l 375 (922)
+|.++..+++
T Consensus 25 kK~~k~~~~m 34 (84)
T TIGR00739 25 RKRRKAHKKL 34 (84)
T ss_pred HHHHHHHHHH
Confidence 3333333443
No 372
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=21.57 E-value=1.8e+03 Score=28.49 Aligned_cols=127 Identities=14% Similarity=0.167 Sum_probs=76.1
Q ss_pred HHHHHHHhhcCCCeeEEEEE--ecCCeEEEEEcCCCCCH----HHHHHHHHccCccc--cccCCccc---cccceEEEEE
Q 039776 7 AVSIEKAIKRLPGIHDAVVD--VLNNRAQVLFYPFFVNE----ETILEAIEGVGFKA--TLVPGETI---EKSTQVCRIR 75 (922)
Q Consensus 7 ~~~i~~~l~~~~gV~~v~v~--~~~~~~~v~~~~~~~~~----~~i~~~v~~~gy~~--~~~~~~~~---~~~~~~~~~~ 75 (922)
...+|++++.++|+++++=. .....++++++.+ .++ .++.+.+.+..... ...++.-. ..+..-..+.
T Consensus 63 t~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~~~~~~~i~~~a 141 (1009)
T COG0841 63 TQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSGVQQPGVTVEKSSSNPLLILA 141 (1009)
T ss_pred hHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCccCCCceEeccCCCceEEEEE
Confidence 46789999999999987643 3555666777543 233 36777777655322 11111000 0011122333
Q ss_pred EcC--CCCCc----cHHHHHHHHhccCCceEEEeeec-CCeEEEEecCCC-----CCHHHHHHHHHhcCCc
Q 039776 76 IKK--LTCTS----CSSTVEKTFQAIQGVQNAHVTLA-TEEAEVHYDPRI-----LSCNQLLKAIEDTGFE 134 (922)
Q Consensus 76 i~g--m~C~~----C~~~ie~~l~~~~Gv~~~~v~~~-~~~~~v~~d~~~-----~~~~~i~~~i~~~G~~ 134 (922)
+.+ +.-.. =...++..|.+++||-++++.=. ...+++..||.+ .++.++..++......
T Consensus 142 l~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~qN~~ 212 (1009)
T COG0841 142 LTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRAQNVQ 212 (1009)
T ss_pred EEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHHhCcc
Confidence 333 33111 12468889999999999988633 567888888864 5678888888765443
No 373
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=21.46 E-value=1.1e+03 Score=25.90 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=71.0
Q ss_pred EEEEEEEcCCCcchhHH-HHHHHHHHCCCEEEEEcCCCHHHH---------HHHHHHhCC-ceEEecCCh---------h
Q 039776 715 ELTGVLSISDPLKPGAH-GVISILKSMQIRSILVTGDNWGTA---------KSIASEVGI-ETVIAEAKP---------E 774 (922)
Q Consensus 715 ~~~G~~~~~d~~r~~~~-~~i~~l~~~gi~~~~~tgd~~~~a---------~~ia~~~gi-~~~~~~~~p---------~ 774 (922)
..+|+.+.--.-+.-.. ..+..|++.|.++.+++.|+...- .+. .+++- +.+|.+.++ .
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~-~~~~~~~~~~~r~~~~~~~l~~~a~ 135 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRM-ERLSRHPNAFIRPSPSSGTLGGVAR 135 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHH-HhhcCCCCeEEEecCCcccccchHH
Confidence 46777777777776644 456788889999999999985431 111 22222 234544422 2
Q ss_pred hHHHHHHHHHHcCCeEEEE---cCCcccHHHHHhCCceEEec---CCcHH------HHHhcCEEEeC
Q 039776 775 QKAEKVEELQASGYTVAMV---GDGINDSPALVAADVGMAIG---AGTDI------AIEAADIVLMK 829 (922)
Q Consensus 775 ~K~~~v~~l~~~g~~v~~v---GDg~nD~~al~~A~vgia~~---~~~~~------~~~~ad~vl~~ 829 (922)
.=.+.++.+...|..+.++ |.|-........||+-+-+- .|.+. ..+.||+++.+
T Consensus 136 ~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVN 202 (332)
T PRK09435 136 KTRETMLLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVIN 202 (332)
T ss_pred HHHHHHHHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEee
Confidence 2345667777778776664 88877777888999876553 33332 22447877664
No 374
>KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism]
Probab=21.44 E-value=95 Score=32.01 Aligned_cols=38 Identities=32% Similarity=0.447 Sum_probs=27.5
Q ss_pred HHHHHHHHHH--cCCeEEEEcCCcc--cHHHHHhCCceEEec
Q 039776 776 KAEKVEELQA--SGYTVAMVGDGIN--DSPALVAADVGMAIG 813 (922)
Q Consensus 776 K~~~v~~l~~--~g~~v~~vGDg~n--D~~al~~A~vgia~~ 813 (922)
-+.+++.+.+ +|-+|++||||-| ..-|+..|.+||.+.
T Consensus 177 ~LTi~E~f~ks~~glkvawiGD~NNvlhs~mia~ak~gih~s 218 (346)
T KOG1504|consen 177 LLTIIEHFGKSVEGLKVAWIGDGNNVLHSWMIAAAKFGIHFS 218 (346)
T ss_pred HHHHHHHHhccccccEEEEEccccHHHHHHHHHhhhcceEEE
Confidence 3456666632 5789999999987 334778888888775
No 375
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.31 E-value=3.6e+02 Score=26.36 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=65.2
Q ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHH----HHHHHh-CCceEEec---CChhhHHHHHHHHHHcCCeEEEEcCCcccHH
Q 039776 730 AHGVISILKSMQIRSILVTGDNWGTAK----SIASEV-GIETVIAE---AKPEQKAEKVEELQASGYTVAMVGDGINDSP 801 (922)
Q Consensus 730 ~~~~i~~l~~~gi~~~~~tgd~~~~a~----~ia~~~-gi~~~~~~---~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~ 801 (922)
..+.++.+.+.|.++.++-|+. +.+. .+.++. |+..+... .++++-.++++.+++.+-.++++|-|.---+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~-~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSE-EVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQE 115 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCH-HHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 4566777778888888885554 4333 333333 34333221 3567788899999999999999999976444
Q ss_pred HHHh-------CCceEEecCCcHHHH---HhcCEEEeCCChhhHHHHHHHHHHHH
Q 039776 802 ALVA-------ADVGMAIGAGTDIAI---EAADIVLMKSNLEDEITAIDLSRKTF 846 (922)
Q Consensus 802 al~~-------A~vgia~~~~~~~~~---~~ad~vl~~~~~~~l~~~i~~~r~~~ 846 (922)
.+-. +.+.+++|..-|... ..|.-.+..-+++.+..++.+=|+..
T Consensus 116 ~~~~~~~~~l~~~v~i~vG~~~d~~aG~~~raP~w~~~~glEWlyRl~~eP~Rl~ 170 (172)
T PF03808_consen 116 RWIARHRQRLPAGVIIGVGGAFDFLAGKVKRAPKWMRRLGLEWLYRLLQEPKRLW 170 (172)
T ss_pred HHHHHHHHHCCCCEEEEECchhhhhccCcCccCHHHHHcCcHHHHHHHhChHhhh
Confidence 3322 225666654322111 11222222334555555655555443
No 376
>PRK13670 hypothetical protein; Provisional
Probab=21.26 E-value=6.7e+02 Score=28.29 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=67.3
Q ss_pred EEEEEEEcCCCcchhHHHHHHHHHH---CCCEEEEEcCC----------CHHHHHHHHHHhCCceE------EecCChhh
Q 039776 715 ELTGVLSISDPLKPGAHGVISILKS---MQIRSILVTGD----------NWGTAKSIASEVGIETV------IAEAKPEQ 775 (922)
Q Consensus 715 ~~~G~~~~~d~~r~~~~~~i~~l~~---~gi~~~~~tgd----------~~~~a~~ia~~~gi~~~------~~~~~p~~ 775 (922)
+.+|+|+=-|++-.|=...|++.++ .|..+++++|+ +...-..++.++|+|.+ ++..+|++
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~p~i~~~~~R~~~a~~~GvD~vielpf~~a~~sae~ 81 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENGVDLVVELPFLYSVQSADF 81 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCCCCCCCHHHHHHHHHHcCCCEEEEeCCchHhCCHHH
Confidence 4689999999999998888877764 47788888887 34455688899999854 56667776
Q ss_pred HHH-HHHHHHHcCCeEEEEcCCcccHHHHHh
Q 039776 776 KAE-KVEELQASGYTVAMVGDGINDSPALVA 805 (922)
Q Consensus 776 K~~-~v~~l~~~g~~v~~vGDg~nD~~al~~ 805 (922)
=.+ -|+.|...|-..+.+|....|...|+.
T Consensus 82 F~~~aV~iL~~l~v~~lv~G~e~g~~~~L~~ 112 (388)
T PRK13670 82 FAEGAVSILDALGVDSLVFGSESGDIEDFQK 112 (388)
T ss_pred HHHhHHHHHHHcCCCEEEEcCCCCCHHHHHH
Confidence 543 355565567778899998888766654
No 377
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=21.03 E-value=4.9e+02 Score=21.67 Aligned_cols=70 Identities=7% Similarity=0.055 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHccCccccccCCcc-ccccceEEEEEEcCCCCCccHHHHHHHHhccCCceEEEe
Q 039776 31 RAQVLFYPFFVNEETILEAIEGVGFKATLVPGET-IEKSTQVCRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHV 103 (922)
Q Consensus 31 ~~~v~~~~~~~~~~~i~~~v~~~gy~~~~~~~~~-~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v 103 (922)
...+..+...--++.+...+...||.++...-.+ ...+..+..+.++ ...+...+.+.|+++..|.++++
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CCchHHHHHHHHhcCcCeEEEEE
Confidence 3445554444457888888999999986544322 1233445666764 47888899999999999988765
No 378
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=20.96 E-value=4.8e+02 Score=21.87 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=41.5
Q ss_pred EEEEEcCCCCCccHHHHHHHHhccCCceEEEeeecCCeEEEEecCCCCCHHHHHHHHHhcCCcccc
Q 039776 72 CRIRIKKLTCTSCSSTVEKTFQAIQGVQNAHVTLATEEAEVHYDPRILSCNQLLKAIEDTGFEAIP 137 (922)
Q Consensus 72 ~~~~i~gm~C~~C~~~ie~~l~~~~Gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~ 137 (922)
.++...|..|+.-.-..++++++++. .+.+.|..+.+ ...+.+....+..|++...
T Consensus 10 ~~lD~~Gl~CP~Pll~~kk~l~~l~~---------G~~l~V~~dd~-~~~~di~~~~~~~G~~~~~ 65 (81)
T PRK00299 10 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDP-ATTRDIPSFCRFMDHELLA 65 (81)
T ss_pred eEEecCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEEE
Confidence 56889999999999999999998842 22344444433 2578888888999998753
No 379
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.95 E-value=3.8e+02 Score=24.10 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=41.6
Q ss_pred EEEEEEEcCCCcchhHHHHHHHHHHCCC-EE-EEEcCCCHHHHHHHHHHhCCceEEec
Q 039776 715 ELTGVLSISDPLKPGAHGVISILKSMQI-RS-ILVTGDNWGTAKSIASEVGIETVIAE 770 (922)
Q Consensus 715 ~~~G~~~~~d~~r~~~~~~i~~l~~~gi-~~-~~~tgd~~~~a~~ia~~~gi~~~~~~ 770 (922)
.++|+-...+.-.+.+++.++.+|+.+- ++ +++-|.....-...+++.|.+.++..
T Consensus 52 dvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 52 DAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEECC
Confidence 5677777767777899999999999976 44 57777655543567889998877653
No 380
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.91 E-value=5.1e+02 Score=27.74 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=33.8
Q ss_pred CChhhHHHHHHHHHH--cCCeEEEEcCCcc----cHHHHHhCCceEEec--CCcH--HHHHhcCEEEeCC
Q 039776 771 AKPEQKAEKVEELQA--SGYTVAMVGDGIN----DSPALVAADVGMAIG--AGTD--IAIEAADIVLMKS 830 (922)
Q Consensus 771 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~~--~~~~~ad~vl~~~ 830 (922)
+||..=.++++.... .|++|+.+|.|.. =+.+|...+.-|.+. ...+ .....||+++..-
T Consensus 141 cTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~av 210 (285)
T PRK10792 141 CTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAV 210 (285)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcC
Confidence 344444444544432 4899999999952 122454555444443 2222 3456799998753
No 381
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.86 E-value=5e+02 Score=22.32 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCceEEecC
Q 039776 728 PGAHGVISILKSMQ--IRSILVTGDNWGTAKSIASEVGIETVIAEA 771 (922)
Q Consensus 728 ~~~~~~i~~l~~~g--i~~~~~tgd~~~~a~~ia~~~gi~~~~~~~ 771 (922)
.+..+.++++++.+ .+++++|+........-+.+.|...+..+.
T Consensus 56 ~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp 101 (112)
T PF00072_consen 56 GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKP 101 (112)
T ss_dssp SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESS
T ss_pred ccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECC
Confidence 45668899998855 789999988887777778899999887764
No 382
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.65 E-value=7.2e+02 Score=27.75 Aligned_cols=69 Identities=12% Similarity=0.224 Sum_probs=42.5
Q ss_pred hHHHHHHHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHhCCceEEe
Q 039776 693 TEEMLTETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNW---GTAKSIASEVGIETVIA 769 (922)
Q Consensus 693 ~~~~~~~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~---~~a~~ia~~~gi~~~~~ 769 (922)
..+.+++....+...+.+. +| |--++++..+.++.+++.|+.+.|.|.-.. +.+..+ ++.|++.+.-
T Consensus 51 ~~~ii~~~~~~g~~~v~~~-GG--------EPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L-~~~g~~~v~i 120 (378)
T PRK05301 51 WIRVLREARALGALQLHFS-GG--------EPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAAL-KDAGLDHIQL 120 (378)
T ss_pred HHHHHHHHHHcCCcEEEEE-CC--------ccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHH-HHcCCCEEEE
Confidence 3445555555554333332 23 344688999999999999999999986543 334443 3557765544
Q ss_pred cC
Q 039776 770 EA 771 (922)
Q Consensus 770 ~~ 771 (922)
.+
T Consensus 121 Sl 122 (378)
T PRK05301 121 SF 122 (378)
T ss_pred Ee
Confidence 43
No 383
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=20.42 E-value=1e+03 Score=30.15 Aligned_cols=105 Identities=19% Similarity=0.158 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCeEE-----------EEeec--CCCCcceeEEecCCCcCCCCEEEEc
Q 039776 348 SMLISFILLGKYLEVLAKGKTSEAIAKLLDLAPEAAT-----------LLTMD--EEGNVISEEEIDSRLIQRNDVIKII 414 (922)
Q Consensus 348 ~~l~~~~~~~~~~e~~~~~~~~~~l~~l~~~~~~~~~-----------v~r~~--~~g~~~~~~~i~~~~l~~GDiv~v~ 414 (922)
.++++...++.+.|.+++ |+.+.++++....+...+ .+..+ .-|. ...+...|.+|-|.++++
T Consensus 96 ~iv~~~~~i~~~~e~~a~-ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GD---iV~l~~Gd~VPaDg~li~ 171 (867)
T TIGR01524 96 LMVLASGLLGFIQESRAE-RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGD---LIELAAGDIIPADARVIS 171 (867)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCC---EEEECCCCEEcccEEEEe
Confidence 445555677888887775 788888888664433333 22111 0243 456778888888888886
Q ss_pred CCCeeeceEEEEeccee-eeccccc--CCCccc-----ccCCCCeeecCcc
Q 039776 415 PGAKVASDGYVLWGKSY-VNESMIT--GEAWPV-----AKREGDTVTGGTL 457 (922)
Q Consensus 415 ~G~~iPaD~~vl~g~~~-vdes~lT--GEs~pv-----~k~~g~~v~~Gs~ 457 (922)
|+-+-+|=-.+.|++. |+-..-+ .+..+. .-..|..+..|..
T Consensus 172 -g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~ 221 (867)
T TIGR01524 172 -ARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHA 221 (867)
T ss_pred -cCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEE
Confidence 5446667777778753 3221110 011111 1247888888864
No 384
>PHA02669 hypothetical protein; Provisional
Probab=20.30 E-value=2.4e+02 Score=26.74 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCCCccCcchhhHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHhc
Q 039776 310 MDVLIALGTNAAYFYSVYSVLRAALSPYFIGKDFFETSSMLISFILLGKYLEVLA-KGKTSEAIAKLLD 377 (922)
Q Consensus 310 ~~~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~-~~~~~~~l~~l~~ 377 (922)
|..|+.++++.+.+| .+++.+-+++-+|-..|... |.|.++.+++|..
T Consensus 1 m~~LVii~iIvavi~--------------------LTgAaiYlLiEiGLAaERanKrsRvK~nMRkLat 49 (210)
T PHA02669 1 MMALVLIGIIVAVIY--------------------LTGAAIYLLIEIGLAAERANKRSRVKANMRKLAT 49 (210)
T ss_pred CceeehhHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 556777776666543 23455666677777777543 3445666666643
No 385
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=20.30 E-value=2.2e+02 Score=36.11 Aligned_cols=186 Identities=16% Similarity=0.151 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhccCCC-----------eEEEEeec--CCCCcceeEEecCCCcCCCCEEEEcCCCee
Q 039776 353 FILLGKYLEVLAKGKTSEAIAKLLDLAPE-----------AATLLTMD--EEGNVISEEEIDSRLIQRNDVIKIIPGAKV 419 (922)
Q Consensus 353 ~~~~~~~~e~~~~~~~~~~l~~l~~~~~~-----------~~~v~r~~--~~g~~~~~~~i~~~~l~~GDiv~v~~G~~i 419 (922)
+..+-.+++.+...++.+.++++...... +...+..+ .-|. ...+...|.+|-|.++++. +-+
T Consensus 123 l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GD---iV~l~~Gd~IPaDg~li~g-~~l 198 (903)
T PRK15122 123 LSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGD---IVHLSAGDMIPADVRLIES-RDL 198 (903)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCC---EEEECCCCEEeeeEEEEEc-Cce
Confidence 33344455555666777788887653321 11222110 0243 4567888888888888864 345
Q ss_pred eceEEEEeccee-eecccc------------cCCCccc-----ccCCCCeeecCcccccceEEEE----------EEEec
Q 039776 420 ASDGYVLWGKSY-VNESMI------------TGEAWPV-----AKREGDTVTGGTLNENGVLHIK----------ATRVG 471 (922)
Q Consensus 420 PaD~~vl~g~~~-vdes~l------------TGEs~pv-----~k~~g~~v~~Gs~~~~g~~~~~----------v~~~g 471 (922)
-+|=-.+.|++. |+-... .++..+. .-..|..|..|+...-=..++. +...-
T Consensus 199 ~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~~ 278 (903)
T PRK15122 199 FISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGTR 278 (903)
T ss_pred EEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCCC
Confidence 566666667653 333221 1222111 2356888888864322111111 11111
Q ss_pred CccHHHHHHHHHHHhhccCChhHHHHHHHhcchhhHHHHHHHHHHHHHHHhhhcCCCCCcccCCccchHHHHHHHHhhee
Q 039776 472 SESALAQIVRLVESAQMAKAPVQKFADRASKYFVPLVIILSFSTWLAWYLAGNFHSYPESWIPSSMDSFELALQFGISVM 551 (922)
Q Consensus 472 ~~t~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl 551 (922)
..|.+.+-+ .++.+.+.+++.++++++++++.+...-|.- .+..++..+++..
T Consensus 279 ~~t~l~~~l----------~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~-----------------~l~~aisl~V~~~ 331 (903)
T PRK15122 279 AQTAFDRGV----------NSVSWLLIRFMLVMVPVVLLINGFTKGDWLE-----------------ALLFALAVAVGLT 331 (903)
T ss_pred CCCcHHHHH----------HHHHHHHHHHHHHHHHHhhhhhhhccCCHHH-----------------HHHHHHHHHHHHc
Confidence 223222211 2456777788888888777766443221210 2334455666777
Q ss_pred eeeccccchhhHHHHHHH
Q 039776 552 VIACPCALGLATPTAVMV 569 (922)
Q Consensus 552 ~~~~P~~l~l~~~~~~~~ 569 (922)
-.+.|.++++++..+...
T Consensus 332 Pe~Lp~~vt~~La~g~~~ 349 (903)
T PRK15122 332 PEMLPMIVSSNLAKGAIA 349 (903)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 777777777777776544
No 386
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=20.14 E-value=3.1e+02 Score=24.18 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.0
Q ss_pred EecCCCcCCCCEEEEcCCCee
Q 039776 399 EIDSRLIQRNDVIKIIPGAKV 419 (922)
Q Consensus 399 ~i~~~~l~~GDiv~v~~G~~i 419 (922)
.-++.++++||+|.|.-|...
T Consensus 43 aKpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 43 AKPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred cccccccCCCCEEEEEeCCcE
Confidence 368899999999999998764
No 387
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=20.00 E-value=5.2e+02 Score=28.06 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=78.7
Q ss_pred HHhccCceEEEEEECCEEEEEEEcCCCcchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCceEEecC----Chh
Q 039776 699 ETEGMAQTEILVSVDGELTGVLSISDPLKPGAHGVISILKSMQIRSILVTGDNWGTAKSIASEVGIETVIAEA----KPE 774 (922)
Q Consensus 699 ~~~~~~~~~l~v~~~~~~~G~~~~~d~~r~~~~~~i~~l~~~gi~~~~~tgd~~~~a~~ia~~~gi~~~~~~~----~p~ 774 (922)
...+.|..++++..+..- + .-.+.++++++-|.+.|..++++-......+..+++..+++.+-+.. -|-
T Consensus 66 A~~~LGg~~i~l~~~~~~-----~--~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~g~~~HPt 138 (305)
T PRK00856 66 AAKRLGADVINFSASTSS-----V--SKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVINAGDGSHQHPT 138 (305)
T ss_pred HHHHcCCcEEEeCCCccc-----C--CCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCCCcH
Confidence 345667777776543221 1 22577889999999998999888888888999999999988777643 243
Q ss_pred hH-HHHHHHHHH----cCCeEEEEcCCccc------HHHHHhCCceEEecC--C--------------cHHHHHhcCEEE
Q 039776 775 QK-AEKVEELQA----SGYTVAMVGDGIND------SPALVAADVGMAIGA--G--------------TDIAIEAADIVL 827 (922)
Q Consensus 775 ~K-~~~v~~l~~----~g~~v~~vGDg~nD------~~al~~A~vgia~~~--~--------------~~~~~~~ad~vl 827 (922)
|= +++....+. +|.+|+++||+.|. +.+++.-++-+.+.. + .+.+.+.||+|.
T Consensus 139 Q~LaDl~Ti~e~~G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvy 218 (305)
T PRK00856 139 QALLDLLTIREEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVM 218 (305)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEE
Confidence 32 222222222 46799999998432 333444444443332 1 134667788887
Q ss_pred eC
Q 039776 828 MK 829 (922)
Q Consensus 828 ~~ 829 (922)
++
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 74
Done!