Query 039778
Match_columns 459
No_of_seqs 209 out of 2564
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 13:06:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.8E-47 1.5E-51 388.3 29.9 447 2-459 140-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.2E-46 2E-50 380.0 30.3 449 1-459 92-565 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.9E-37 4.2E-42 273.2 6.4 390 5-429 55-451 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.3E-36 4.9E-41 266.5 7.0 392 27-453 53-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.3E-35 9.4E-40 247.1 -13.2 415 18-454 106-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 2.5E-32 5.4E-37 243.5 -3.8 346 45-430 29-375 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 3.5E-32 7.5E-37 242.6 -3.0 384 1-424 6-393 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 3.4E-31 7.4E-36 223.7 -9.6 433 4-459 47-522 (565)
9 KOG0618 Serine/threonine phosp 99.9 2.1E-29 4.5E-34 234.2 -4.1 427 5-452 24-487 (1081)
10 KOG0618 Serine/threonine phosp 99.9 1.7E-28 3.8E-33 228.1 -2.3 416 6-455 2-466 (1081)
11 PLN03210 Resistant to P. syrin 99.9 6.6E-24 1.4E-28 218.8 25.3 342 65-454 551-906 (1153)
12 PLN03210 Resistant to P. syrin 99.9 5.9E-22 1.3E-26 204.4 25.6 346 17-404 549-904 (1153)
13 KOG4237 Extracellular matrix p 99.8 1.6E-22 3.4E-27 171.2 -3.3 284 73-381 68-358 (498)
14 KOG4237 Extracellular matrix p 99.8 3.6E-21 7.8E-26 163.1 -1.7 237 3-244 68-367 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 2.3E-18 5E-23 165.5 16.5 265 97-437 201-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.7 8.6E-17 1.9E-21 154.8 15.9 133 50-211 203-335 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-18 2.7E-23 157.0 1.7 158 296-453 137-319 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 6.4E-19 1.4E-23 158.9 -0.7 42 93-134 19-63 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 3.2E-16 6.9E-21 151.8 11.6 119 321-453 305-427 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 4.9E-16 1.1E-20 150.6 11.1 246 98-406 179-428 (754)
21 KOG0617 Ras suppressor protein 99.6 8.7E-17 1.9E-21 120.9 -4.1 163 269-439 31-194 (264)
22 KOG0617 Ras suppressor protein 99.5 3.5E-17 7.5E-22 123.0 -7.0 162 24-195 31-193 (264)
23 KOG3207 Beta-tubulin folding c 99.3 4.5E-13 9.8E-18 116.0 2.3 160 295-454 171-339 (505)
24 KOG1909 Ran GTPase-activating 99.3 1.6E-13 3.4E-18 115.5 -0.7 234 2-235 30-310 (382)
25 KOG1909 Ran GTPase-activating 99.3 3.1E-13 6.6E-18 113.8 0.6 135 295-429 156-310 (382)
26 KOG4341 F-box protein containi 99.3 6E-14 1.3E-18 120.7 -4.4 208 26-233 138-356 (483)
27 KOG3207 Beta-tubulin folding c 99.3 3.9E-13 8.4E-18 116.4 -0.9 226 8-236 99-339 (505)
28 PF14580 LRR_9: Leucine-rich r 99.2 6.7E-12 1.5E-16 99.1 4.5 128 25-156 18-148 (175)
29 KOG1259 Nischarin, modulator o 99.2 5.2E-12 1.1E-16 104.3 1.7 135 316-458 280-415 (490)
30 PF14580 LRR_9: Leucine-rich r 99.1 2.7E-11 5.9E-16 95.7 3.6 140 35-182 6-148 (175)
31 KOG4341 F-box protein containi 99.1 6.5E-13 1.4E-17 114.4 -5.9 110 49-158 139-252 (483)
32 KOG1259 Nischarin, modulator o 99.1 5.1E-11 1.1E-15 98.6 2.9 202 194-406 210-412 (490)
33 KOG4658 Apoptotic ATPase [Sign 99.1 2.2E-10 4.8E-15 113.6 6.6 131 46-184 521-652 (889)
34 PLN03150 hypothetical protein; 99.1 4.3E-10 9.4E-15 109.1 8.3 113 346-458 419-532 (623)
35 KOG2120 SCF ubiquitin ligase, 99.0 9.9E-12 2.1E-16 102.5 -4.4 159 268-427 207-373 (419)
36 KOG2120 SCF ubiquitin ligase, 99.0 1E-11 2.3E-16 102.4 -4.8 196 27-226 186-390 (419)
37 KOG4658 Apoptotic ATPase [Sign 99.0 3.1E-10 6.6E-15 112.6 4.2 197 5-211 526-730 (889)
38 PLN03150 hypothetical protein; 98.9 2.3E-09 5E-14 104.1 7.0 90 370-459 419-508 (623)
39 COG4886 Leucine-rich repeat (L 98.9 1.6E-09 3.5E-14 100.5 5.5 178 271-458 116-294 (394)
40 KOG0532 Leucine-rich repeat (L 98.9 1.1E-10 2.4E-15 104.9 -2.7 167 276-453 80-246 (722)
41 KOG2982 Uncharacterized conser 98.8 2.6E-10 5.7E-15 94.3 -1.5 214 124-359 47-263 (418)
42 PF13855 LRR_8: Leucine rich r 98.8 2.2E-09 4.9E-14 69.6 3.2 57 322-379 3-59 (61)
43 COG4886 Leucine-rich repeat (L 98.8 6.1E-09 1.3E-13 96.7 6.9 192 30-236 97-290 (394)
44 PF13855 LRR_8: Leucine rich r 98.8 3.1E-09 6.8E-14 68.9 3.5 60 394-453 2-61 (61)
45 KOG0532 Leucine-rich repeat (L 98.8 3.3E-10 7.3E-15 101.9 -2.3 153 266-428 116-271 (722)
46 KOG2982 Uncharacterized conser 98.6 6.1E-09 1.3E-13 86.4 0.4 207 28-236 47-262 (418)
47 KOG3665 ZYG-1-like serine/thre 98.6 7.3E-09 1.6E-13 100.3 -0.3 200 3-207 61-284 (699)
48 KOG0531 Protein phosphatase 1, 98.5 1.4E-08 3E-13 94.4 -0.4 193 3-211 73-268 (414)
49 KOG0531 Protein phosphatase 1, 98.5 8.3E-09 1.8E-13 95.9 -2.1 197 23-236 69-268 (414)
50 COG5238 RNA1 Ran GTPase-activa 98.5 2E-08 4.3E-13 82.3 -0.8 235 2-236 30-316 (388)
51 KOG1644 U2-associated snRNP A' 98.4 7E-07 1.5E-11 70.2 5.6 108 27-159 43-151 (233)
52 KOG1859 Leucine-rich repeat pr 98.3 6.8E-09 1.5E-13 96.5 -8.0 186 38-236 99-292 (1096)
53 COG5238 RNA1 Ran GTPase-activa 98.3 2.5E-07 5.5E-12 76.0 1.4 185 270-454 29-255 (388)
54 KOG3665 ZYG-1-like serine/thre 98.3 5.1E-07 1.1E-11 87.7 3.5 131 3-135 123-263 (699)
55 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.3E-12 69.7 -1.8 134 297-434 28-163 (177)
56 PF12799 LRR_4: Leucine Rich r 98.2 1.1E-06 2.3E-11 51.9 2.5 36 394-430 2-37 (44)
57 KOG1644 U2-associated snRNP A' 98.1 5.2E-06 1.1E-10 65.4 5.8 109 72-185 42-151 (233)
58 KOG4579 Leucine-rich repeat (L 98.1 1.5E-07 3.1E-12 69.0 -3.3 83 346-430 54-136 (177)
59 KOG1859 Leucine-rich repeat pr 98.1 7.8E-08 1.7E-12 89.7 -6.6 122 7-133 169-290 (1096)
60 PF12799 LRR_4: Leucine Rich r 98.0 9.1E-06 2E-10 47.9 4.1 39 2-41 1-39 (44)
61 PRK15386 type III secretion pr 98.0 2.6E-05 5.6E-10 70.0 7.8 132 295-451 51-187 (426)
62 PF13306 LRR_5: Leucine rich r 98.0 1.3E-05 2.7E-10 61.4 5.2 82 316-401 8-89 (129)
63 PF13306 LRR_5: Leucine rich r 97.9 2.1E-05 4.6E-10 60.1 5.9 127 287-420 3-129 (129)
64 KOG2739 Leucine-rich acidic nu 97.9 4.7E-06 1E-10 68.6 1.2 89 23-111 40-130 (260)
65 PRK15386 type III secretion pr 97.9 0.0001 2.3E-09 66.2 9.7 134 269-427 50-187 (426)
66 KOG1947 Leucine rich repeat pr 97.9 1.4E-06 3.1E-11 83.6 -2.5 130 25-154 187-327 (482)
67 KOG1947 Leucine rich repeat pr 97.7 2.4E-06 5.1E-11 82.1 -3.2 116 46-161 186-308 (482)
68 KOG2123 Uncharacterized conser 97.7 1.3E-06 2.9E-11 72.1 -4.9 103 25-129 18-124 (388)
69 KOG2123 Uncharacterized conser 97.6 2.6E-06 5.7E-11 70.4 -3.6 98 321-423 20-123 (388)
70 KOG2739 Leucine-rich acidic nu 97.4 8.3E-05 1.8E-09 61.4 2.2 106 342-449 40-151 (260)
71 KOG3864 Uncharacterized conser 97.2 5.8E-05 1.3E-09 59.7 -1.3 81 4-84 103-188 (221)
72 KOG3864 Uncharacterized conser 96.2 0.00039 8.4E-09 55.2 -2.8 76 304-379 109-186 (221)
73 PF13504 LRR_7: Leucine rich r 95.8 0.0053 1.1E-07 27.6 1.1 16 442-458 2-17 (17)
74 PF00560 LRR_1: Leucine Rich R 95.6 0.0048 1E-07 30.0 0.6 17 442-459 1-17 (22)
75 PF00560 LRR_1: Leucine Rich R 95.1 0.011 2.3E-07 28.8 0.9 17 419-436 2-18 (22)
76 KOG4308 LRR-containing protein 94.3 0.00048 1E-08 64.5 -9.2 183 273-455 89-304 (478)
77 PF13516 LRR_6: Leucine Rich r 94.1 0.023 4.9E-07 28.3 0.8 23 1-23 1-23 (24)
78 KOG4308 LRR-containing protein 92.8 0.0014 3E-08 61.4 -8.7 159 298-456 89-277 (478)
79 smart00364 LRR_BAC Leucine-ric 91.5 0.13 2.8E-06 25.9 1.3 18 441-459 2-19 (26)
80 smart00370 LRR Leucine-rich re 91.3 0.17 3.7E-06 25.6 1.8 17 441-458 2-18 (26)
81 smart00369 LRR_TYP Leucine-ric 91.3 0.17 3.7E-06 25.6 1.8 17 441-458 2-18 (26)
82 KOG0473 Leucine-rich repeat pr 90.9 0.0074 1.6E-07 49.3 -5.4 87 365-454 38-124 (326)
83 smart00370 LRR Leucine-rich re 89.2 0.4 8.7E-06 24.2 2.1 23 1-23 1-23 (26)
84 smart00369 LRR_TYP Leucine-ric 89.2 0.4 8.7E-06 24.2 2.1 23 1-23 1-23 (26)
85 smart00367 LRR_CC Leucine-rich 86.4 0.43 9.4E-06 24.1 1.2 22 1-22 1-23 (26)
86 smart00368 LRR_RI Leucine rich 84.5 0.64 1.4E-05 24.1 1.3 21 2-22 2-22 (28)
87 KOG0473 Leucine-rich repeat pr 75.1 0.11 2.4E-06 42.7 -5.2 60 344-405 64-123 (326)
88 smart00365 LRR_SD22 Leucine-ri 73.7 3 6.5E-05 21.2 1.6 14 2-15 2-15 (26)
89 KOG3763 mRNA export factor TAP 67.7 2.8 6.2E-05 39.5 1.4 39 120-158 216-254 (585)
90 KOG3763 mRNA export factor TAP 66.7 3.1 6.8E-05 39.2 1.4 71 338-408 211-285 (585)
91 KOG4242 Predicted myosin-I-bin 52.5 55 0.0012 30.8 6.6 55 4-58 216-278 (553)
92 PF07723 LRR_2: Leucine Rich R 28.9 21 0.00045 18.0 0.2 8 125-132 3-10 (26)
93 KOG1665 AFH1-interacting prote 25.5 64 0.0014 26.7 2.4 35 344-382 195-229 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.8e-47 Score=388.35 Aligned_cols=447 Identities=30% Similarity=0.464 Sum_probs=301.3
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
++|++|++++|.+++..+..+..+++|++|++++|.+.+ +..+.++++|++|++++|.+....+..+.++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 344445555554444445555555555555555554432 233455555555555555555445555555555555555
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN 159 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (459)
++|.+.+..+ ..+..+++|++|++++|.+.... +..+..+++|++|++++|.+... .+..+..+++|+.|++++|.
T Consensus 220 ~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 220 GYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred cCCccCCcCC-hhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCe
Confidence 5555443222 24555555555555555554322 44555555666666655555432 44455555666666666655
Q ss_pred ccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec
Q 039778 160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI 239 (459)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 239 (459)
+....+. .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+ +..+..+++|+.|++++|.+.+..
T Consensus 296 l~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 296 LSGEIPE--LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred eccCCCh--hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC-ChHHhCCCCCcEEECCCCeeEeeC
Confidence 5433222 3445566666666666665555656666666666666666655433 344556666666666666654322
Q ss_pred ccccccccCCceeeec-CccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccC
Q 039778 240 SLEPFFNYSKLKIFHA-NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGD 318 (459)
Q Consensus 240 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 318 (459)
. ..+....+++.+.. .+...+.....+..+++|+.|++++|.+.+..|..+.. ++.|+.+++++|.+.+..+..+..
T Consensus 373 p-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 373 P-EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred C-hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc-CCCCCEEECcCCcccCccChhhcc
Confidence 1 22233344444432 22333333444566788888888888888777766554 888889999988888777777778
Q ss_pred CCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEE
Q 039778 319 MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGL 398 (459)
Q Consensus 319 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 398 (459)
+++|+.|++++|.+.+.+|... ..++|+.|++++|++.+..+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 528 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528 (968)
T ss_pred CCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence 8899999999998876666543 36889999999999998888889999999999999999998899999999999999
Q ss_pred EcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778 399 YISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 459 (459)
++++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.+++++|++++.+|+
T Consensus 529 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999995
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.2e-46 Score=379.99 Aligned_cols=449 Identities=29% Similarity=0.478 Sum_probs=304.4
Q ss_pred CCCCcEEEccCCcccccchhhh-cCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 1 LSNLKFLDLSHNSFNNSVLSSL-AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+......+++|++|++++|.+....+..++++++|++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence 4677888888887775555443 477888888888777766555566778888888888777677777888888888888
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN 159 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (459)
++|.+.+..+ ..+.++++|++|++++|.+.... |..+..+++|++|++++|.+... ++..++++++|++|++++|.
T Consensus 172 ~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 172 GGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred ccCcccccCC-hhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCc--CChhHhcCCCCCEEECcCce
Confidence 8887664443 36777888888888888766543 56777788888888887776654 66677777888888887777
Q ss_pred ccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec
Q 039778 160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI 239 (459)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 239 (459)
+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+ +..+..+++|+.|++++|.+....
T Consensus 248 l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 248 LTGPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-PELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred eccccCh--hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC-ChhHcCCCCCcEEECCCCccCCcC
Confidence 6543332 4666777777777777776666666767777777777777665443 345566677777777766654322
Q ss_pred ccccccccCCceeeecC-ccccCCcccCcCCCCCccEEEeccCccccccchhhhh-----------------------cC
Q 039778 240 SLEPFFNYSKLKIFHAN-NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK-----------------------VL 295 (459)
Q Consensus 240 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----------------------~~ 295 (459)
...+..+++|+.+... +...+.....+..+++|+.|++++|.+.+.+|..+.. .+
T Consensus 325 -~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 325 -PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred -ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 2234444555555432 2222233333444555566666555555444443332 14
Q ss_pred CCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEE
Q 039778 296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLN 375 (459)
Q Consensus 296 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 375 (459)
++|+.|++++|.+.+..+..+..++.|+.|++++|.+.+.++.... .+++|+.|++++|.+.+..+..+ ..++|+.|+
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ 481 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD 481 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence 4555555555555544444555555555555555555543333322 35666666666666655444443 346778888
Q ss_pred ccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccc
Q 039778 376 LDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 455 (459)
Q Consensus 376 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 455 (459)
+++|.+.+..|..+..+++|+.|++++|.+.+.+|+.+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|++++
T Consensus 482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred CcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 88888877778888888899999999999988888888899999999999999998899999999999999999999999
Q ss_pred cCCC
Q 039778 456 SLPS 459 (459)
Q Consensus 456 ~~p~ 459 (459)
.+|.
T Consensus 562 ~~p~ 565 (968)
T PLN00113 562 EIPK 565 (968)
T ss_pred cCCh
Confidence 8884
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-37 Score=273.20 Aligned_cols=390 Identities=25% Similarity=0.283 Sum_probs=287.2
Q ss_pred cEEEccCCcccccchhhhcCC--ccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEcc
Q 039778 5 KFLDLSHNSFNNSVLSSLAGL--SSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLM 80 (459)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (459)
+.||.++..+....+..+.++ ..-++|++++|++.+ ...|.++++|+++++.+|.++ ..|..-....+|+.|++.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 556777777776666666553 455668888887665 345677888888888888775 455444455668888888
Q ss_pred CCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcc
Q 039778 81 ATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (459)
.|.+. .+...++..++.|++||++.|.+..+. ...+..-.++++|++.+|++.+. ....|..+.+|-.|.+++|++
T Consensus 134 ~N~I~-sv~se~L~~l~alrslDLSrN~is~i~-~~sfp~~~ni~~L~La~N~It~l--~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 134 HNLIS-SVTSEELSALPALRSLDLSRNLISEIP-KPSFPAKVNIKKLNLASNRITTL--ETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred ccccc-cccHHHHHhHhhhhhhhhhhchhhccc-CCCCCCCCCceEEeecccccccc--ccccccccchheeeecccCcc
Confidence 77776 444456777788888888888877765 34566667788888888887765 445667777888888888887
Q ss_pred cccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecc
Q 039778 161 AKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240 (459)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 240 (459)
+..+.. .+..+++|+.|++..|++...-.-.|.++++|+.|.+..|.+. ......+..+.+++.|+++.|++....
T Consensus 210 ttLp~r--~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn- 285 (873)
T KOG4194|consen 210 TTLPQR--SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVN- 285 (873)
T ss_pred cccCHH--HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhh-
Confidence 766544 5667888888888888766544556777788888888877766 555566777788888888877665211
Q ss_pred cccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCC
Q 039778 241 LEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMN 320 (459)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 320 (459)
..+...++.|+.|+++.|.+. .+....++.+++|++|+|++|.++.....+|..+.
T Consensus 286 -----------------------~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 286 -----------------------EGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred -----------------------cccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 123345567778888888776 34333344488899999999999888888888888
Q ss_pred CCcEEEccCCccccccchhHHhcccccceeecccccccc---ccccccccccCCceEEccCCcccCCCcccccccCCCcE
Q 039778 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQG 397 (459)
Q Consensus 321 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 397 (459)
.|++|.++.|.+. .+.+..|..+++|+.|+++.|.+.. ....+|..+++|+.|++.||++..+.-.+|..++.|+.
T Consensus 342 ~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 342 QLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 9999999999887 8888888888999999999997763 23456777899999999999988777788888999999
Q ss_pred EEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778 398 LYISDNDITGSIPTWIGNISFLDAIIMPDNHL 429 (459)
Q Consensus 398 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 429 (459)
|++.+|.|...-+.+|..+ .|++|.+..-.+
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 9999998887778888877 888876665443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-36 Score=266.47 Aligned_cols=392 Identities=23% Similarity=0.237 Sum_probs=323.8
Q ss_pred cccEEEeccccccCC--ccccc--CccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778 27 SLKNLSLAYNRLEGS--INIEG--MNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL 102 (459)
Q Consensus 27 ~L~~L~l~~~~~~~~--~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 102 (459)
+-+.|+.++..+... ..+.. .+.-++|++++|++.++....|.++++|+.+++.+|... .+|. ......+|+.|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L 130 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKL 130 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEE
Confidence 345666666655432 12222 234567999999999999999999999999999999876 5553 34445679999
Q ss_pred ECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcc
Q 039778 103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYID 182 (459)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 182 (459)
++.+|.|..+. .+.+..++.|+.++++.|.+... -...+..-.++++|++++|.+...... .+..+.+|..|.++
T Consensus 131 ~L~~N~I~sv~-se~L~~l~alrslDLSrN~is~i--~~~sfp~~~ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 131 DLRHNLISSVT-SEELSALPALRSLDLSRNLISEI--PKPSFPAKVNIKKLNLASNRITTLETG--HFDSLNSLLTLKLS 205 (873)
T ss_pred eeecccccccc-HHHHHhHhhhhhhhhhhchhhcc--cCCCCCCCCCceEEeeccccccccccc--cccccchheeeecc
Confidence 99999998886 67899999999999999988774 334566778999999999999876554 46778899999999
Q ss_pred ccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCC
Q 039778 183 RNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGP 262 (459)
Q Consensus 183 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (459)
+|+++...+..|..+++|+.|++..|++. .+....+.++++|+.+.+..|.+..-.
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~----------------------- 261 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLD----------------------- 261 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCccccc-----------------------
Confidence 99999888889999999999999999876 444677899999999999888765211
Q ss_pred cccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHh
Q 039778 263 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM 342 (459)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 342 (459)
...+..+.++++|++..|.+...-..|++. +..|+.|++++|.|.......+..+++|+.|+++.|+++ .+++..+.
T Consensus 262 -DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~ 338 (873)
T KOG4194|consen 262 -DGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFR 338 (873)
T ss_pred -Ccceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHH
Confidence 223456788999999999998444445554 999999999999999998999999999999999999999 88888888
Q ss_pred cccccceeeccccccccccccccccccCCceEEccCCccc---CCCcccccccCCCcEEEcccccccCCCcccccCcccc
Q 039778 343 GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI---GDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFL 419 (459)
Q Consensus 343 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 419 (459)
.+..|+.|+++.|.+...-..+|..+.+|++|+|+.|.+. +..+..|..+++|+.|.+.||++....-.+|..+++|
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 8999999999999999777788999999999999999964 3355678889999999999999995555789999999
Q ss_pred cEEEcCCCcccCCCchhhcCCCcccEEeccCCcc
Q 039778 420 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453 (459)
Q Consensus 420 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 453 (459)
+.|+|.+|.+-..-|..|..+ .|+.|.+..-.|
T Consensus 419 E~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred ceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 999999999987888888887 788887664433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=4.3e-35 Score=247.08 Aligned_cols=415 Identities=26% Similarity=0.320 Sum_probs=296.2
Q ss_pred chhhhcCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCC
Q 039778 18 VLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSL 96 (459)
Q Consensus 18 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 96 (459)
.++.+.....++.++.+.+.+.. +..++.+..|+.++-.+|+++ ..+..+.+|.+|..+.+.+++.. ..+...+. +
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m 182 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-M 182 (565)
T ss_pred ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-H
Confidence 33334444445555555554443 334555566666666666664 56666677777777777777665 44443444 8
Q ss_pred CCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccc
Q 039778 97 SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176 (459)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (459)
+.|+++|...+.+..+ |..++.+.+|..|+++.|.+.. +| .|..|.-|+++.+..|++.-.... ...+++++
T Consensus 183 ~~L~~ld~~~N~L~tl--P~~lg~l~~L~~LyL~~Nki~~---lP-ef~gcs~L~Elh~g~N~i~~lpae--~~~~L~~l 254 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLETL--PPELGGLESLELLYLRRNKIRF---LP-EFPGCSLLKELHVGENQIEMLPAE--HLKHLNSL 254 (565)
T ss_pred HHHHhcccchhhhhcC--ChhhcchhhhHHHHhhhccccc---CC-CCCccHHHHHHHhcccHHHhhHHH--Hhcccccc
Confidence 8888888888877777 7788888888888888888875 44 778888888888888887544333 45688999
Q ss_pred cEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeee-------ecccccccccCC
Q 039778 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI-------PISLEPFFNYSK 249 (459)
Q Consensus 177 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~~ 249 (459)
.+|++.+|++. ..|..+..+++|.+||++++.++ .. +..++++ +|+.|-+.+|++.. ....+.+..+.+
T Consensus 255 ~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 255 LVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SL-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred eeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cC-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 99999999986 46777788899999999999887 44 4567888 99999999997741 111111111111
Q ss_pred -ceeeecCcc-----ccC---Cc-ccCcCCCCCccEEEeccCccccccchhhhhcC--CCccEEEeecCcCCCCCCCccc
Q 039778 250 -LKIFHANNS-----LSG---PF-RLPTRSRKNIIALDISYNKLQGHIPVEIGKVL--PNLGFLSITFNAFNGSIPSSFG 317 (459)
Q Consensus 250 -l~~~~~~~~-----~~~---~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~ 317 (459)
.+..+.... ... .. ........+.+.|++++-.++ .+|...+... .-....+++.|.+. +.+..+.
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~ 408 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV 408 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH
Confidence 000000000 000 00 011223457788999988888 8888877633 23778899999887 5555555
Q ss_pred CCCCCcE-EEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCc
Q 039778 318 DMNSLIY-LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ 396 (459)
Q Consensus 318 ~~~~L~~-L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 396 (459)
.++.+++ +.++.|.+. .++..+. .+++|..|++++|.+. .+|..++.+..|+.++++.|.+. ..|.++.....++
T Consensus 409 ~lkelvT~l~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLE 484 (565)
T ss_pred HHHHHHHHHHhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHH
Confidence 5555544 455566664 7776655 5999999999999877 56777777888999999999887 6788888888899
Q ss_pred EEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778 397 GLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 454 (459)
Q Consensus 397 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 454 (459)
++-.++|++....++.+.++.+|..|+|.+|.+. .+|..++++.+|++|.+++|+|.
T Consensus 485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999999666667999999999999999999 78989999999999999999998
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.5e-32 Score=243.47 Aligned_cols=346 Identities=26% Similarity=0.336 Sum_probs=167.9
Q ss_pred ccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCC
Q 039778 45 EGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL 124 (459)
Q Consensus 45 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 124 (459)
..++.++-|.|....+. ..|+.++.|.+|++|++..+...... ..+..++.|+.+++.+|++....+|..+.++..|
T Consensus 29 ~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 33344444444333332 33344444444444444444333111 1344444445555544444444445555555555
Q ss_pred cEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEE
Q 039778 125 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLH 204 (459)
Q Consensus 125 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 204 (459)
..|++++|++.. .|..+.+.+++-.|++++|++.+++.. .+.+++.|-.|++++|++. ..|.....+..|++|+
T Consensus 106 t~lDLShNqL~E---vP~~LE~AKn~iVLNLS~N~IetIPn~--lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 106 TILDLSHNQLRE---VPTNLEYAKNSIVLNLSYNNIETIPNS--LFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred eeeecchhhhhh---cchhhhhhcCcEEEEcccCccccCCch--HHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 555555555444 444444445555555555555444333 2334455555555555543 2333444455555555
Q ss_pred cCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccc
Q 039778 205 VPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQ 284 (459)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 284 (459)
++++.+. .+....+..+..|+.|.+++.+.+.. .++.....+.+|..++++.|.+.
T Consensus 180 Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~-----------------------N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 180 LSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLD-----------------------NIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred cCCChhh-HHHHhcCccchhhhhhhcccccchhh-----------------------cCCCchhhhhhhhhccccccCCC
Confidence 5555443 11122233333444444444332200 00111222334444444444444
Q ss_pred cccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccc-cccc
Q 039778 285 GHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-QLFS 363 (459)
Q Consensus 285 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~ 363 (459)
.+|..+.. +++|+.|+|++|.++. .........+|++|+++.|+++ .+|..+++ +++|+.|.+.+|+++- .+|.
T Consensus 236 -~vPecly~-l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 236 -IVPECLYK-LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred -cchHHHhh-hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcccccCCcc
Confidence 45555444 5666666666666652 2222333445666666666665 55555543 6666666666665542 2455
Q ss_pred ccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 364 KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 364 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
+++.+..|+.+...+|.+. .+|..++.|..|+.|.++.|++. .+|+++--++.|+.|++..|.-.
T Consensus 311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 5556666666666655544 45566666666666666666655 56666655666666666666444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.5e-32 Score=242.57 Aligned_cols=384 Identities=24% Similarity=0.288 Sum_probs=310.3
Q ss_pred CCCCcEEEccCCccc-ccchhhhcCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778 1 LSNLKFLDLSHNSFN-NSVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN 78 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 78 (459)
+|-+|-+|+++|+++ +..|+.+..|+.+++|.+....+.. +..++.+.+|++|.++.|++. ..-..+..+|.||++.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 466788999999998 5788899999999999999888765 567899999999999999976 4556788999999999
Q ss_pred ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCccccc-ccCCCcccEEEccC
Q 039778 79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS-IGSFPSLKTLYLKS 157 (459)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~ 157 (459)
+..+.....--+..+..+..|.+||+++|.+.+. |..+...+++-.|++++|++.. +|.. +.+++.|-.|++++
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev--P~~LE~AKn~iVLNLS~N~Iet---IPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV--PTNLEYAKNSIVLNLSYNNIET---IPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhc--chhhhhhcCcEEEEcccCcccc---CCchHHHhhHhHhhhcccc
Confidence 9888776433334677899999999999999988 8899999999999999999977 5544 45889999999999
Q ss_pred CcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeee
Q 039778 158 NNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI 237 (459)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 237 (459)
|++...++- +..+..|++|.+++|++...--..++.+++|+.|++++.+-+-.-.+..+..+.+|..++++.|.+..
T Consensus 160 NrLe~LPPQ---~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~ 236 (1255)
T KOG0444|consen 160 NRLEMLPPQ---IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI 236 (1255)
T ss_pred chhhhcCHH---HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc
Confidence 998766554 67788999999999988765555666788899999999876533346778899999999999987652
Q ss_pred ecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCccc
Q 039778 238 PISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFG 317 (459)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 317 (459)
. +......++|+.|++++|.++ ++...... ..+|+.|+++.|.++ ..+..++
T Consensus 237 v-------------------------Pecly~l~~LrrLNLS~N~it-eL~~~~~~-W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 237 V-------------------------PECLYKLRNLRRLNLSGNKIT-ELNMTEGE-WENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred c-------------------------hHHHhhhhhhheeccCcCcee-eeeccHHH-Hhhhhhhccccchhc-cchHHHh
Confidence 1 112344678999999999998 44444443 689999999999998 7788999
Q ss_pred CCCCCcEEEccCCcccc-ccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCc
Q 039778 318 DMNSLIYLDLSNNQLTG-EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ 396 (459)
Q Consensus 318 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 396 (459)
.++.|+.|...+|+++- .+|..+. .+.+|+.+...+|.+. ..|+++..|+.|+.|.++.|.+. .+|.++.-++.|+
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIG-KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIG-KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK 365 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchh-hhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence 99999999999998763 3565554 4889999999999876 67899999999999999999977 6899999999999
Q ss_pred EEEcccccccCCCcccccCcccccEEEc
Q 039778 397 GLYISDNDITGSIPTWIGNISFLDAIIM 424 (459)
Q Consensus 397 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l 424 (459)
.|++..|+-.-..|.--..-++++.-++
T Consensus 366 vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 366 VLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred eeeccCCcCccCCCCcchhhhcceeeec
Confidence 9999999877333322112244554433
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=3.4e-31 Score=223.69 Aligned_cols=433 Identities=27% Similarity=0.340 Sum_probs=283.9
Q ss_pred CcEEEccCCcccccchhhhcCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCC
Q 039778 4 LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT 82 (459)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (459)
+..+++++|.++ ...+.+..+..|..++++.+.... ++++..+..++.++.+.+++. +.+..+..+++|++++++.+
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc
Confidence 556778888876 556667778888888888887665 667888888888888888876 78888888888888888888
Q ss_pred cceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccc
Q 039778 83 GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK 162 (459)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 162 (459)
... ..+. .+..+..|+.++..++++... |..+..+.++..+++.++.+.. +++..-+++.|++++...|.+..
T Consensus 125 ~~~-el~~-~i~~~~~l~dl~~~~N~i~sl--p~~~~~~~~l~~l~~~~n~l~~---l~~~~i~m~~L~~ld~~~N~L~t 197 (565)
T KOG0472|consen 125 ELK-ELPD-SIGRLLDLEDLDATNNQISSL--PEDMVNLSKLSKLDLEGNKLKA---LPENHIAMKRLKHLDCNSNLLET 197 (565)
T ss_pred cee-ecCc-hHHHHhhhhhhhccccccccC--chHHHHHHHHHHhhccccchhh---CCHHHHHHHHHHhcccchhhhhc
Confidence 776 3433 677788888888888888877 7788888888888888887776 44444457888888887777665
Q ss_pred cccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccc
Q 039778 163 TVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLE 242 (459)
Q Consensus 163 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 242 (459)
.++. ++.+.+|+-|++..|++. ..| .|+.|..|+++++..+++. .++.+...+++++..|++++|.+....+
T Consensus 198 lP~~---lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pd-- 269 (565)
T KOG0472|consen 198 LPPE---LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPD-- 269 (565)
T ss_pred CChh---hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCch--
Confidence 5443 667777888888888765 345 5777888888888888776 5656666778888888888887753222
Q ss_pred cccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhh-----cCCCccE----EEeecCcCC----
Q 039778 243 PFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK-----VLPNLGF----LSITFNAFN---- 309 (459)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~----L~L~~~~~~---- 309 (459)
....+++++.++..+-.-...+...+.+ .|+.|.+.||.+.. +-..+.+ .+..|+. =.++...-+
T Consensus 270 e~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 1122233333332222222233334444 55666666654331 1000000 0000000 000000000
Q ss_pred ----CCCCCcccCCCCCcEEEccCCccccccchhHHhccc--ccceeeccccccc-----------------------cc
Q 039778 310 ----GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF--NLEYLLLSNNSLQ-----------------------GQ 360 (459)
Q Consensus 310 ----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~i~-----------------------~~ 360 (459)
...........+.+.|++++-+++ .+|...|.... -++.++++.|++. +.
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isf 426 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISF 426 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcccc
Confidence 000011112234455555555555 55555544221 1444444444432 24
Q ss_pred cccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCC
Q 039778 361 LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQL 440 (459)
Q Consensus 361 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 440 (459)
.+..+..+++|+.|++++|.+. .+|..+..+..|++|+++.|++. .+|.++-....++.+..+++++....|+.+.++
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred chHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 4555677899999999988766 67888888888999999999888 888887777778877777788885556669999
Q ss_pred CcccEEeccCCcccccCCC
Q 039778 441 DYLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 441 ~~L~~L~l~~~~~~~~~p~ 459 (459)
..|.+||+++|.+. .+|+
T Consensus 505 ~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred hhcceeccCCCchh-hCCh
Confidence 99999999999987 6663
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=2.1e-29 Score=234.17 Aligned_cols=427 Identities=25% Similarity=0.268 Sum_probs=216.4
Q ss_pred cEEEccCCcccccchhhhcCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCc
Q 039778 5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATG 83 (459)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 83 (459)
..|++++|.+-....+.+.++-+|++|+++++.+.+ +..+..+++|+.|+++.+-+. ..+....++.+|+++.+.++.
T Consensus 24 ~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 24 QILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNR 102 (1081)
T ss_pred HhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccch
Confidence 345555554444444455444446666666665444 344555556666666655553 344455555566666665544
Q ss_pred ceeeeccccccCCCCCcEEECcccccCCccCcccccCCCC-------------------CcEEecCCCccCCCCcccccc
Q 039778 84 FKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRK-------------------LRFLDLSGLRIRDGSKVLHSI 144 (459)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------------L~~L~l~~~~~~~~~~~~~~~ 144 (459)
.. . .+..+..+.+|+.|+++.+.+... |..+..+.. ++++++..+.+... ++..+
T Consensus 103 l~-~-lP~~~~~lknl~~LdlS~N~f~~~--Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~--~~~~i 176 (1081)
T KOG0618|consen 103 LQ-S-LPASISELKNLQYLDLSFNHFGPI--PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGS--FLIDI 176 (1081)
T ss_pred hh-c-CchhHHhhhcccccccchhccCCC--chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccc--hhcch
Confidence 32 2 222455555566666655554443 233322222 33444443333321 33333
Q ss_pred cCCCcccEEEccCCcccccccc---------------cccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCc
Q 039778 145 GSFPSLKTLYLKSNNFAKTVTT---------------TQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQ 209 (459)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 209 (459)
..+.+ .+++++|.+....-. ......-++|+.|+.+.|.++..... ....+|++++++.+.
T Consensus 177 ~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 177 YNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNN 252 (1081)
T ss_pred hhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhh
Confidence 33333 456665554311000 00011234555556666655532222 123678888888887
Q ss_pred CcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccch
Q 039778 210 LTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 289 (459)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 289 (459)
+. .++ .++..+++|+.+....|.+. ..........+++.+.+.......+.........|++|++..+.+. ..|.
T Consensus 253 l~-~lp-~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 253 LS-NLP-EWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred hh-cch-HHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccch
Confidence 76 554 77788888888888887762 2222333344444444444444444555556788888888888877 5555
Q ss_pred hhhhcCCC-ccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccc
Q 039778 290 EIGKVLPN-LGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNL 368 (459)
Q Consensus 290 ~~~~~~~~-L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 368 (459)
.++..... +..++.+.+.+.......-...+.|+.|++.+|.+++....- +.++++|+.|++++|.+.......+.++
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kl 406 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKL 406 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhch
Confidence 44332222 444444444443222111222344555555555555333222 2235556666666665554444455555
Q ss_pred cCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCC-CchhhcCCCcccEEe
Q 039778 369 TKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGP-IPSEFCQLDYLEILD 447 (459)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 447 (459)
+.|+.|+++||+++ .+|..+.++..|++|....|.+. ..| .+..+++|+.+|++.|+++.. +|.. ...+.|+.||
T Consensus 407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLd 482 (1081)
T KOG0618|consen 407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLD 482 (1081)
T ss_pred HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh-CCCcccceee
Confidence 55666666666555 34455555555666655555555 444 445555666666665555422 2221 1225556666
Q ss_pred ccCCc
Q 039778 448 LSKNN 452 (459)
Q Consensus 448 l~~~~ 452 (459)
+++|.
T Consensus 483 lSGN~ 487 (1081)
T KOG0618|consen 483 LSGNT 487 (1081)
T ss_pred ccCCc
Confidence 65554
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-28 Score=228.07 Aligned_cols=416 Identities=28% Similarity=0.334 Sum_probs=281.0
Q ss_pred EEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCc
Q 039778 6 FLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATG 83 (459)
Q Consensus 6 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 83 (459)
.+|++.+.++ ..|..+..-..++.|+++.|.+.+ ...+....+|+.|+++++.+. ..+..+..+++|+.|.++.+.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 4677777776 555566555669999999997665 445666778999999999987 678889999999999999988
Q ss_pred ceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccccc
Q 039778 84 FKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKT 163 (459)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 163 (459)
+. ..+ ....++.+|+++.+.++..... |..+..+.+|..|+++.|.+.. .|..+..+..+..+..++|.....
T Consensus 80 i~-~vp-~s~~~~~~l~~lnL~~n~l~~l--P~~~~~lknl~~LdlS~N~f~~---~Pl~i~~lt~~~~~~~s~N~~~~~ 152 (1081)
T KOG0618|consen 80 IR-SVP-SSCSNMRNLQYLNLKNNRLQSL--PASISELKNLQYLDLSFNHFGP---IPLVIEVLTAEEELAASNNEKIQR 152 (1081)
T ss_pred Hh-hCc-hhhhhhhcchhheeccchhhcC--chhHHhhhcccccccchhccCC---CchhHHhhhHHHHHhhhcchhhhh
Confidence 76 444 4778899999999999998888 8899999999999999998876 677777777777777777721111
Q ss_pred ccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccccc
Q 039778 164 VTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP 243 (459)
Q Consensus 164 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 243 (459)
++.. .++.+++..+.+.+.+......+.. .++++++.+. ...+..+++|+.+....|.+..-...
T Consensus 153 ------lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~l~~~-- 217 (1081)
T KOG0618|consen 153 ------LGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME----VLDLSNLANLEVLHCERNQLSELEIS-- 217 (1081)
T ss_pred ------hccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh----hhhhhhccchhhhhhhhcccceEEec--
Confidence 1111 1444455444444444433333333 4555555443 12233344444444433332210000
Q ss_pred ccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCC-------------
Q 039778 244 FFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG------------- 310 (459)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~------------- 310 (459)
.++++.+........ .........+|++++++.+.+. .+|.|+.. +++|+.+...+|.+..
T Consensus 218 ---g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 218 ---GPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLVALPLRISRITSLVS 291 (1081)
T ss_pred ---CcchheeeeccCcce-eeccccccccceeeecchhhhh-cchHHHHh-cccceEecccchhHHhhHHHHhhhhhHHH
Confidence 011111110000000 0111122344555555555554 44444433 5555555544443321
Q ss_pred ---------CCCCcccCCCCCcEEEccCCccccccchhHHh-------------------------cccccceeeccccc
Q 039778 311 ---------SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM-------------------------GCFNLEYLLLSNNS 356 (459)
Q Consensus 311 ---------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------------~~~~L~~L~l~~~~ 356 (459)
..+....+.+.|++|++..|++. ..|..++. ..+.|+.|.+.+|.
T Consensus 292 l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred HHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence 23344555778888888888876 55543332 23468888888999
Q ss_pred cccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchh
Q 039778 357 LQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSE 436 (459)
Q Consensus 357 i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 436 (459)
+++..+..+.+++.|+.|+|++|.+....+..+.++..|++|+++||.++ .+|+.+..++.|++|...+|.+. ..| .
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e 447 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E 447 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence 99888999999999999999999988766677889999999999999999 88899999999999999999999 788 6
Q ss_pred hcCCCcccEEeccCCcccc
Q 039778 437 FCQLDYLEILDLSKNNIAG 455 (459)
Q Consensus 437 ~~~~~~L~~L~l~~~~~~~ 455 (459)
+.++++|+.+|++.|+++.
T Consensus 448 ~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhhcCcceEEecccchhhh
Confidence 8999999999999998863
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=6.6e-24 Score=218.75 Aligned_cols=342 Identities=21% Similarity=0.260 Sum_probs=188.6
Q ss_pred ccccccCCCCcEEEccCCcc------eeeeccccccCC-CCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCC
Q 039778 65 LSSLTALSSLRKLNLMATGF------KGTFDVQELDSL-SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG 137 (459)
Q Consensus 65 ~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 137 (459)
..+|.+|++|+.|.+..+.. ...++ ..+..+ ++|+.|.+.++.+... |..+ ...+|++|++.++.+..
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~l--P~~f-~~~~L~~L~L~~s~l~~- 625 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCM--PSNF-RPENLVKLQMQGSKLEK- 625 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCC--CCcC-CccCCcEEECcCccccc-
Confidence 44567777777777754321 11112 133333 4577777777766665 4444 45677777777776654
Q ss_pred CcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCC
Q 039778 138 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSS 217 (459)
Q Consensus 138 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 217 (459)
++..+..+++|+.++++++......+ .+..+++|+.|++.+|.....+|..+..+++|+.|++++|.....++..
T Consensus 626 --L~~~~~~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 626 --LWDGVHSLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred --cccccccCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 55556677777777777665433222 2556677777777777655566767777777777777776544344322
Q ss_pred cccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCC
Q 039778 218 PLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPN 297 (459)
Q Consensus 218 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 297 (459)
. ++++|+.|++++|..... + .....+|+.|+++++.+. .+|... .+++
T Consensus 701 -i-~l~sL~~L~Lsgc~~L~~-----~----------------------p~~~~nL~~L~L~~n~i~-~lP~~~--~l~~ 748 (1153)
T PLN03210 701 -I-NLKSLYRLNLSGCSRLKS-----F----------------------PDISTNISWLDLDETAIE-EFPSNL--RLEN 748 (1153)
T ss_pred -C-CCCCCCEEeCCCCCCccc-----c----------------------ccccCCcCeeecCCCccc-cccccc--cccc
Confidence 1 567777777776532100 0 011234555666655544 344332 1455
Q ss_pred ccEEEeecCcCCC-------CCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccC
Q 039778 298 LGFLSITFNAFNG-------SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTK 370 (459)
Q Consensus 298 L~~L~L~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 370 (459)
|+.|.+..+.... ..+.....+++|+.|++++|.....+|..+ .++++|+.|++++|.....++... .+++
T Consensus 749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s 826 (1153)
T PLN03210 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTGI-NLES 826 (1153)
T ss_pred cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCCC-Cccc
Confidence 5555554432110 011112223456666666664444555543 246666666666664333333333 4566
Q ss_pred CceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccC
Q 039778 371 LKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK 450 (459)
Q Consensus 371 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 450 (459)
|++|++++|......|.. ..+|++|++++|.+. .+|..+..+++|+.|++++|.....+|..+..+++|+.+++++
T Consensus 827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred cCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 666666666544333321 245666666666665 5555666666666666666644445555555666666666666
Q ss_pred Cccc
Q 039778 451 NNIA 454 (459)
Q Consensus 451 ~~~~ 454 (459)
|...
T Consensus 903 C~~L 906 (1153)
T PLN03210 903 CGAL 906 (1153)
T ss_pred Cccc
Confidence 6533
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=5.9e-22 Score=204.41 Aligned_cols=346 Identities=19% Similarity=0.221 Sum_probs=179.3
Q ss_pred cchhhhcCCccccEEEecccccc--------CCcccccC-ccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceee
Q 039778 17 SVLSSLAGLSSLKNLSLAYNRLE--------GSINIEGM-NMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGT 87 (459)
Q Consensus 17 ~~~~~~~~~~~L~~L~l~~~~~~--------~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 87 (459)
....+|.+|++|+.|.+..+... -+..+..+ ++|+.|.+.++.+. ..+..+ ...+|+.|++.++.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 34455667777777777544211 12233333 34666666666553 444444 3466666776666554 2
Q ss_pred eccccccCCCCCcEEECcccc-cCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccc
Q 039778 88 FDVQELDSLSNLEELDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT 166 (459)
Q Consensus 88 ~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 166 (459)
+. ..+..+++|+.++++++. +..+ | .+..+++|++|++.+|..... +|..+.++++|+.|++++|......+.
T Consensus 626 L~-~~~~~l~~Lk~L~Ls~~~~l~~i--p-~ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 626 LW-DGVHSLTGLRNIDLRGSKNLKEI--P-DLSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cc-cccccCCCCCEEECCCCCCcCcC--C-ccccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCC
Confidence 22 244556666777766553 2222 2 355566666666666543322 556666666666666666543322222
Q ss_pred cccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccc
Q 039778 167 TQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFN 246 (459)
Q Consensus 167 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 246 (459)
. ..+++|+.|++++|......|.. ..+|++|+++++.+. .++.. ..+++|+.|.+.++.... ......
T Consensus 700 --~-i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~--l~~~~~- 767 (1153)
T PLN03210 700 --G-INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEK--LWERVQ- 767 (1153)
T ss_pred --c-CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc--ccccccccccccccchhh--cccccc-
Confidence 1 14556666666666543333321 245666666666543 23211 134555555554322100 000000
Q ss_pred cCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEE
Q 039778 247 YSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLD 326 (459)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 326 (459)
.........+++|+.|++++|.....+|..+.. +++|+.|++++|......+... .+++|+.|+
T Consensus 768 --------------~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~ 831 (1153)
T PLN03210 768 --------------PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI-NLESLESLD 831 (1153)
T ss_pred --------------ccchhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence 000011123456666777666555456655443 6666666666664433333333 456666666
Q ss_pred ccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccc
Q 039778 327 LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDND 404 (459)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 404 (459)
+++|.....+|.. .++|+.|++++|.+. ..|..+..+++|++|++.+|+....++..+..+++|+.+++++|.
T Consensus 832 Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 832 LSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 6666433233321 346666666666665 344555666666666666665444555555566666666666664
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=1.6e-22 Score=171.24 Aligned_cols=284 Identities=23% Similarity=0.214 Sum_probs=173.0
Q ss_pred CCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCC-CccCCCCcccccccCCCccc
Q 039778 73 SLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSG-LRIRDGSKVLHSIGSFPSLK 151 (459)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~ 151 (459)
.-..|.|..|.+. .++..+|..+++|+.||++.|.|..+. |.+|..++.+..|.+-+ |++.+. -...|+.+..++
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l--~k~~F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDL--PKGAFGGLSSLQ 143 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhh--hhhHhhhHHHHH
Confidence 4556677777766 666667777777777777777777765 56677777666666655 666553 223456666666
Q ss_pred EEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEE---
Q 039778 152 TLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVL--- 228 (459)
Q Consensus 152 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L--- 228 (459)
.|.+.-+++.-.... .+..++++..|.+.+|.+..+-...|..+..++++++..+.+.. .-+++.+...
T Consensus 144 rLllNan~i~Cir~~--al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~~a~ 215 (498)
T KOG4237|consen 144 RLLLNANHINCIRQD--ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADDLAM 215 (498)
T ss_pred HHhcChhhhcchhHH--HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc------ccccchhhhHHhh
Confidence 666666655443332 45566666666666665544333455555666666665544221 0111111110
Q ss_pred ---EeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeec
Q 039778 229 ---LLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITF 305 (459)
Q Consensus 229 ---~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 305 (459)
..++-... . ...+..-+...... .........+..=.-+.+...+..|...+..+++|+++++++
T Consensus 216 ~~ietsgarc~--~-------p~rl~~~Ri~q~~a---~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 216 NPIETSGARCV--S-------PYRLYYKRINQEDA---RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred chhhcccceec--c-------hHHHHHHHhcccch---hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 00110000 0 00000000000000 000000111111122334344466777777899999999999
Q ss_pred CcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcc
Q 039778 306 NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHF 381 (459)
Q Consensus 306 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~ 381 (459)
|+++.+-..+|.+...++.|.+.+|++. .+...+|.++..|+.|++.+|+|+...+.+|....+|.+|++-.|++
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 9999888889999999999999999987 88888999999999999999999988888998888999999887765
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=3.6e-21 Score=163.06 Aligned_cols=237 Identities=25% Similarity=0.327 Sum_probs=145.7
Q ss_pred CCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCC-CCCCcccccccccCCCCcEEEc
Q 039778 3 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSG-NKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l 79 (459)
....|+|..|.|+.+.+++|+.+++||.|+|++|.+.. +.+|.+++.|.+|-+.+ |+|++....+|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 34678888899998999999999999999999987664 66788888877777766 7888777788888888888888
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccC------------------------
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR------------------------ 135 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------ 135 (459)
.-+.+. -+....+..+++|..|.+.++.+..+. ...+..+..++.+.+-.+.+.
T Consensus 148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~-~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSIC-KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred Chhhhc-chhHHHHHHhhhcchhcccchhhhhhc-cccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 777665 334456777777777777777655442 223444444444443332210
Q ss_pred ------------------------------------CCCcccccccCCCcccEEEccCCcccccccccccccCcccccEE
Q 039778 136 ------------------------------------DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDL 179 (459)
Q Consensus 136 ------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 179 (459)
+...-...|+.+++|+++++++|++..+... .+.+...+++|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~--aFe~~a~l~eL 303 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG--AFEGAAELQEL 303 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh--hhcchhhhhhh
Confidence 0000011244555566666665555443332 34455555555
Q ss_pred EccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccc
Q 039778 180 YIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPF 244 (459)
Q Consensus 180 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 244 (459)
.+.+|++..+....|.++..|++|++.+|+++ .+.+..+.....|..|.+-.|++..+...+++
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWL 367 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCcccCccchHHH
Confidence 55555555444455555555566666655555 34445555555555555555555544444443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=2.3e-18 Score=165.50 Aligned_cols=265 Identities=23% Similarity=0.247 Sum_probs=145.6
Q ss_pred CCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccc
Q 039778 97 SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176 (459)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (459)
.+-..|+++++.++.+ |..+. ++|+.|++.+|.+.. ++. ..++|++|++++|++...+.. .++|
T Consensus 201 ~~~~~LdLs~~~LtsL--P~~l~--~~L~~L~L~~N~Lt~---LP~---lp~~Lk~LdLs~N~LtsLP~l------p~sL 264 (788)
T PRK15387 201 NGNAVLNVGESGLTTL--PDCLP--AHITTLVIPDNNLTS---LPA---LPPELRTLEVSGNQLTSLPVL------PPGL 264 (788)
T ss_pred CCCcEEEcCCCCCCcC--Ccchh--cCCCEEEccCCcCCC---CCC---CCCCCcEEEecCCccCcccCc------cccc
Confidence 3456777877777765 44443 367788888777765 332 246777888887777654321 2467
Q ss_pred cEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecC
Q 039778 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHAN 256 (459)
Q Consensus 177 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (459)
+.|++.+|.+.. +|.. .+.|+.|++++|.+. .++. ..++|+.|++++|.+....
T Consensus 265 ~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~Lp----------------- 318 (788)
T PRK15387 265 LELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLP----------------- 318 (788)
T ss_pred ceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccCC-----------------
Confidence 777777776653 2321 246777777777665 3321 2356777777776554100
Q ss_pred ccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCcccccc
Q 039778 257 NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEI 336 (459)
Q Consensus 257 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 336 (459)
....+|+.|++++|.+. .+|.. ..+|+.|++++|.+... +.. .++|+.|++.+|.+. .+
T Consensus 319 -----------~lp~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~L 377 (788)
T PRK15387 319 -----------ALPSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SL 377 (788)
T ss_pred -----------CCcccccccccccCccc-ccccc----ccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cC
Confidence 01134555666666655 34421 24566666666666532 211 235556666666655 34
Q ss_pred chhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCc
Q 039778 337 PEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNI 416 (459)
Q Consensus 337 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 416 (459)
|.. .++|+.|++++|++.+ ++.. .++|+.|++++|.+.. +|.. ..+|+.|++++|++. .+|..+.++
T Consensus 378 P~l----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L 444 (788)
T PRK15387 378 PAL----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHL 444 (788)
T ss_pred ccc----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhc
Confidence 432 2356666666665553 2211 2356666666665553 3322 124555666666655 555555556
Q ss_pred ccccEEEcCCCcccCCCchhh
Q 039778 417 SFLDAIIMPDNHLEGPIPSEF 437 (459)
Q Consensus 417 ~~L~~L~l~~~~~~~~~~~~~ 437 (459)
++|+.|+|++|++++..+..+
T Consensus 445 ~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 445 SSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCeEECCCCCCCchHHHHH
Confidence 666666666666655444433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=8.6e-17 Score=154.80 Aligned_cols=133 Identities=19% Similarity=0.210 Sum_probs=63.5
Q ss_pred CceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEec
Q 039778 50 LESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDL 129 (459)
Q Consensus 50 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 129 (459)
-..|+++.+.++ .+|..+. ++|+.|.+.+|.+. .++. ..++|++|++++|.+..+ |. ..++|++|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL--P~---lp~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL--PV---LPPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc--cC---cccccceeec
Confidence 445666666554 3444332 35666666665554 2221 235566666666655544 22 1345556666
Q ss_pred CCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCc
Q 039778 130 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQ 209 (459)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 209 (459)
.+|.+.. ++.. .++|+.|++++|++...+. ..++|+.|++++|.+... |.. ...|+.|++++|.
T Consensus 270 s~N~L~~---Lp~l---p~~L~~L~Ls~N~Lt~LP~------~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~ 333 (788)
T PRK15387 270 FSNPLTH---LPAL---PSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQ 333 (788)
T ss_pred cCCchhh---hhhc---hhhcCEEECcCCccccccc------cccccceeECCCCccccC-CCC---cccccccccccCc
Confidence 6555543 2221 1345555555555543321 123455555555554432 211 1234555555555
Q ss_pred Cc
Q 039778 210 LT 211 (459)
Q Consensus 210 ~~ 211 (459)
+.
T Consensus 334 L~ 335 (788)
T PRK15387 334 LT 335 (788)
T ss_pred cc
Confidence 43
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.2e-18 Score=157.04 Aligned_cols=158 Identities=26% Similarity=0.286 Sum_probs=102.6
Q ss_pred CCccEEEeecCcCCCC----CCCcccCCCCCcEEEccCCccccccchhHHh---cccccceeeccccccccc----cccc
Q 039778 296 PNLGFLSITFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM---GCFNLEYLLLSNNSLQGQ----LFSK 364 (459)
Q Consensus 296 ~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~----~~~~ 364 (459)
++|+.+++++|.+... ....+..++.|++|++++|.+.+.....+.. ..++|++|++++|.+.+. ....
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 5556666666655421 2234455667888888888776433222222 345888888888877643 2334
Q ss_pred cccccCCceEEccCCcccCCCccccc-----ccCCCcEEEcccccccC----CCcccccCcccccEEEcCCCcccCC---
Q 039778 365 KNNLTKLKRLNLDGNHFIGDIPESLS-----NCSSLQGLYISDNDITG----SIPTWIGNISFLDAIIMPDNHLEGP--- 432 (459)
Q Consensus 365 ~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~--- 432 (459)
+..+++|++|++++|++.+.....+. ..++|++|++++|.+++ .+...+...++|+.+++++|.+...
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 56678899999999887753332222 23689999999998863 2334555668899999999988854
Q ss_pred -CchhhcCC-CcccEEeccCCcc
Q 039778 433 -IPSEFCQL-DYLEILDLSKNNI 453 (459)
Q Consensus 433 -~~~~~~~~-~~L~~L~l~~~~~ 453 (459)
....+... +.|+.+++.+|++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCCC
Confidence 33334444 6889999988875
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=6.4e-19 Score=158.89 Aligned_cols=42 Identities=24% Similarity=0.190 Sum_probs=19.1
Q ss_pred ccCCCCCcEEECcccccCCcc---CcccccCCCCCcEEecCCCcc
Q 039778 93 LDSLSNLEELDMSDNEIDNLV---VPKDYRGLRKLRFLDLSGLRI 134 (459)
Q Consensus 93 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~ 134 (459)
+..++.|++++++++.+.... ++..+...+.+++++++++.+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~ 63 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET 63 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence 334445566666555543321 122333444455555554433
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=3.2e-16 Score=151.85 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=53.5
Q ss_pred CCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEc
Q 039778 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYI 400 (459)
Q Consensus 321 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 400 (459)
+|+.|++++|.++ .+|..+ .++|+.|++++|.++. ++..+ .++|+.|++++|++. .+|..+. ++|++|++
T Consensus 305 sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdL 374 (754)
T PRK15370 305 GITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDV 374 (754)
T ss_pred hHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEEC
Confidence 4445555555544 333322 2345555555555443 22222 135555555555544 2333332 34555555
Q ss_pred ccccccCCCcccccCcccccEEEcCCCcccCCCchhhc----CCCcccEEeccCCcc
Q 039778 401 SDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFC----QLDYLEILDLSKNNI 453 (459)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~ 453 (459)
++|.+. .+|+.+. .+|+.|++++|++. .+|..+. .++.+..|++.+|++
T Consensus 375 s~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 375 SRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 555554 3443332 24555555555554 3333222 234455555555554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=4.9e-16 Score=150.57 Aligned_cols=246 Identities=24% Similarity=0.340 Sum_probs=119.4
Q ss_pred CCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCccccc
Q 039778 98 NLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177 (459)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 177 (459)
+...|++++..++.+ |..+. +.++.|++++|.+.. ++..+. ++|+.|++++|.+...+.. + ...|+
T Consensus 179 ~~~~L~L~~~~LtsL--P~~Ip--~~L~~L~Ls~N~Lts---LP~~l~--~nL~~L~Ls~N~LtsLP~~---l--~~~L~ 244 (754)
T PRK15370 179 NKTELRLKILGLTTI--PACIP--EQITTLILDNNELKS---LPENLQ--GNIKTLYANSNQLTSIPAT---L--PDTIQ 244 (754)
T ss_pred CceEEEeCCCCcCcC--Ccccc--cCCcEEEecCCCCCc---CChhhc--cCCCEEECCCCccccCChh---h--hcccc
Confidence 455666666665554 33332 356666666666654 333332 4666666666665543221 1 13566
Q ss_pred EEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc
Q 039778 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN 257 (459)
Q Consensus 178 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (459)
.|++++|.+.. +|..+. .+|+.|++++|.+. .++.. + .++|+.|++++|.+....
T Consensus 245 ~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~-l--~~sL~~L~Ls~N~Lt~LP------------------ 299 (754)
T PRK15370 245 EMELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPEN-L--PEELRYLSVYDNSIRTLP------------------ 299 (754)
T ss_pred EEECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccc-c--CCCCcEEECCCCccccCc------------------
Confidence 66666666552 343332 45666666666555 33221 1 135666666666443100
Q ss_pred cccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccc
Q 039778 258 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP 337 (459)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 337 (459)
.....+|+.|++++|.+. .+|... .++|+.|++++|.+.. ++..+. ++|+.|++++|+++ .+|
T Consensus 300 ---------~~lp~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP 362 (754)
T PRK15370 300 ---------AHLPSGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLP 362 (754)
T ss_pred ---------ccchhhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCC
Confidence 001124555555555554 333322 2455555555555543 222221 35555566555554 444
Q ss_pred hhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccc----cccCCCcEEEccccccc
Q 039778 338 EHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESL----SNCSSLQGLYISDNDIT 406 (459)
Q Consensus 338 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~ 406 (459)
..+ .++|++|++++|.+.. ++..+. +.|+.|++++|.+. .+|..+ ..++++..|++.+|++.
T Consensus 363 ~~l---p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 363 ETL---PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhh---cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 332 2455555555555552 222221 24555555555554 233322 22345555566555554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=8.7e-17 Score=120.90 Aligned_cols=163 Identities=31% Similarity=0.442 Sum_probs=120.2
Q ss_pred CCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccc
Q 039778 269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE 348 (459)
Q Consensus 269 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 348 (459)
...+++.|.++.++++ .+|..+.. +.+|+.|++++|++. ..+.+++.+++|+.|+++-|++. ..|.. |..+|.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg-fgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG-FGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc-cCCCchhh
Confidence 3456677788888877 66666655 777888888888776 56667777888888888877776 55554 34578888
Q ss_pred eeecccccccc-ccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCC
Q 039778 349 YLLLSNNSLQG-QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN 427 (459)
Q Consensus 349 ~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 427 (459)
.|++.+|.+.+ ..+..|..+..|+.|++++|++. .+|..+..+.+|+.|.+.+|.+. .+|..++.+..|+.|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 88888887765 35666777777888888888776 66777777888888888888777 77777777888888888888
Q ss_pred cccCCCchhhcC
Q 039778 428 HLEGPIPSEFCQ 439 (459)
Q Consensus 428 ~~~~~~~~~~~~ 439 (459)
+++ .+|..+++
T Consensus 184 rl~-vlppel~~ 194 (264)
T KOG0617|consen 184 RLT-VLPPELAN 194 (264)
T ss_pred eee-ecChhhhh
Confidence 877 56655554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=3.5e-17 Score=123.04 Aligned_cols=162 Identities=27% Similarity=0.395 Sum_probs=138.1
Q ss_pred CCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778 24 GLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL 102 (459)
Q Consensus 24 ~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 102 (459)
.+.++..|.+++|++.- ++.+..+.+|+.|+++++.+. .++..++.++.|+.|+++-+... +.+..|++++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCchhhhh
Confidence 56788899999998765 778999999999999999986 78889999999999999877653 345589999999999
Q ss_pred ECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcc
Q 039778 103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYID 182 (459)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 182 (459)
|++.+++.+...|..+..+..|+.|++.++.+.. +|..++++++|+.|.+..|.+...+. .++.+..|++|.+.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~---lp~dvg~lt~lqil~lrdndll~lpk---eig~lt~lrelhiq 181 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI---LPPDVGKLTNLQILSLRDNDLLSLPK---EIGDLTRLRELHIQ 181 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCccc---CChhhhhhcceeEEeeccCchhhCcH---HHHHHHHHHHHhcc
Confidence 9999999988889999999999999999998765 88999999999999999998765543 57889999999999
Q ss_pred ccccccccchhcc
Q 039778 183 RNDFIGSLPWCLA 195 (459)
Q Consensus 183 ~~~~~~~~~~~l~ 195 (459)
+|+++. .|..++
T Consensus 182 gnrl~v-lppel~ 193 (264)
T KOG0617|consen 182 GNRLTV-LPPELA 193 (264)
T ss_pred cceeee-cChhhh
Confidence 998874 443444
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.5e-13 Score=116.05 Aligned_cols=160 Identities=20% Similarity=0.211 Sum_probs=71.0
Q ss_pred CCCccEEEeecCcCCCCC-CCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCce
Q 039778 295 LPNLGFLSITFNAFNGSI-PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR 373 (459)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 373 (459)
+|+|+.|+++.|.+.... ...-..++.|+.|.+++|.++..-..+....+|+|+.|+++.|...........-+..|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 555555555555443211 1111233455555555555553333344444555555555555311111112223345555
Q ss_pred EEccCCcccCCC-cccccccCCCcEEEcccccccCCC-ccc-----ccCcccccEEEcCCCcccCC-CchhhcCCCcccE
Q 039778 374 LNLDGNHFIGDI-PESLSNCSSLQGLYISDNDITGSI-PTW-----IGNISFLDAIIMPDNHLEGP-IPSEFCQLDYLEI 445 (459)
Q Consensus 374 L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 445 (459)
|+|++|++.+.. ......++.|..|+++.|++.+.. |++ ....++|+.|++..|++.+. ....++.+++|+.
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH 330 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence 555555544221 122344555555555555554321 221 12345555555555555421 1123444455555
Q ss_pred EeccCCccc
Q 039778 446 LDLSKNNIA 454 (459)
Q Consensus 446 L~l~~~~~~ 454 (459)
|.+-.|.+.
T Consensus 331 l~~~~n~ln 339 (505)
T KOG3207|consen 331 LRITLNYLN 339 (505)
T ss_pred hhccccccc
Confidence 555555443
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.32 E-value=1.6e-13 Score=115.53 Aligned_cols=234 Identities=23% Similarity=0.287 Sum_probs=171.6
Q ss_pred CCCcEEEccCCcccccchhh----hcCCccccEEEeccccccC------------CcccccCccCceEEcCCCCCCcccc
Q 039778 2 SNLKFLDLSHNSFNNSVLSS----LAGLSSLKNLSLAYNRLEG------------SINIEGMNMLESLDLSGNKFNSSIL 65 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~------------~~~~~~l~~L~~L~l~~~~~~~~~~ 65 (459)
..++.|+||+|.+....... +.+.++|+..+++.-.... ..++..+++|++|+||+|.+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 45789999999876544444 4567889998888653222 1235578899999999999877666
Q ss_pred ccc----ccCCCCcEEEccCCcceeeec------------cccccCCCCCcEEECcccccCCccC---cccccCCCCCcE
Q 039778 66 SSL----TALSSLRKLNLMATGFKGTFD------------VQELDSLSNLEELDMSDNEIDNLVV---PKDYRGLRKLRF 126 (459)
Q Consensus 66 ~~~----~~l~~L~~L~l~~~~~~~~~~------------~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~ 126 (459)
..| ..|..|++|.+.+|++...-. .+...+-++|+++.+++|++.+... ...+...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 554 578999999999998863221 1234556899999999998766531 234677789999
Q ss_pred EecCCCccCCCC--cccccccCCCcccEEEccCCcccccc--cccccccCcccccEEEccccccccccchhcc-----CC
Q 039778 127 LDLSGLRIRDGS--KVLHSIGSFPSLKTLYLKSNNFAKTV--TTTQGLCELVHLQDLYIDRNDFIGSLPWCLA-----NL 197 (459)
Q Consensus 127 L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~ 197 (459)
+.+..|.+...+ .+...+..+++|+.|++..|.+.... .....+..+++|+++++++|.+.......+. ..
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 999999886543 35567789999999999999886432 2234577788999999999987664443332 36
Q ss_pred CCCcEEEcCCCcCcCc---CCCCcccCCCcccEEEeeccee
Q 039778 198 TSLRVLHVPDNQLTGN---LSSSPLMHLTSIEVLLLSNNHF 235 (459)
Q Consensus 198 ~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~ 235 (459)
+.|+.+.+.+|.++.+ .........|.|..|++++|.+
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8999999999987632 1123345579999999999988
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=3.1e-13 Score=113.78 Aligned_cols=135 Identities=21% Similarity=0.241 Sum_probs=76.6
Q ss_pred CCCccEEEeecCcCCCCC----CCcccCCCCCcEEEccCCcccccc---chhHHhcccccceeecccccccc----cccc
Q 039778 295 LPNLGFLSITFNAFNGSI----PSSFGDMNSLIYLDLSNNQLTGEI---PEHLAMGCFNLEYLLLSNNSLQG----QLFS 363 (459)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~i~~----~~~~ 363 (459)
.+.|+++....|++.+.. ...|...+.|+.+.+..|.+.... ....+.+||+|+.|++.+|-++. .+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 456777777766665432 233455566777777666554222 12234456777777777765543 2334
Q ss_pred ccccccCCceEEccCCcccCCCcccc-----cccCCCcEEEcccccccCC----CcccccCcccccEEEcCCCcc
Q 039778 364 KKNNLTKLKRLNLDGNHFIGDIPESL-----SNCSSLQGLYISDNDITGS----IPTWIGNISFLDAIIMPDNHL 429 (459)
Q Consensus 364 ~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 429 (459)
.+..++.|+.+++++|.+....+.++ ...++|++|.+.+|.++.. +..++...+.|..|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 45556667777777776655544433 2346667777777665532 122333456666666766666
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.30 E-value=6e-14 Score=120.71 Aligned_cols=208 Identities=24% Similarity=0.178 Sum_probs=112.5
Q ss_pred ccccEEEeccccccCCc----ccccCccCceEEcCCCC-CCcccccccc-cCCCCcEEEccCCcceeeeccc-cccCCCC
Q 039778 26 SSLKNLSLAYNRLEGSI----NIEGMNMLESLDLSGNK-FNSSILSSLT-ALSSLRKLNLMATGFKGTFDVQ-ELDSLSN 98 (459)
Q Consensus 26 ~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~ 98 (459)
..||.|++.|+.-.... ...+++++++|.+.+|. +++.....++ .|++|++|++..|........+ ....|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 36888888888644322 24568888888888875 5544444443 7888888888876544343333 2345788
Q ss_pred CcEEECcccc-cCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCccccc
Q 039778 99 LEELDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177 (459)
Q Consensus 99 L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 177 (459)
|++++++.|. +....+......+..++.+.+.+|.-.....+...-..++.+.++++..|...+.......-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888887774 333233334556666777766665544433333334455556666655554333222222234455666
Q ss_pred EEEccccc-cccccchhcc-CCCCCcEEEcCCCcC-cCcCCCCcccCCCcccEEEeecc
Q 039778 178 DLYIDRND-FIGSLPWCLA-NLTSLRVLHVPDNQL-TGNLSSSPLMHLTSIEVLLLSNN 233 (459)
Q Consensus 178 ~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~ 233 (459)
++..+++. +.+..-..++ .+.+|+.+.+..|+- ++.-....-.++++|+.+++..+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 66666553 2222222332 356666666666642 21111222234455555555444
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.9e-13 Score=116.43 Aligned_cols=226 Identities=21% Similarity=0.197 Sum_probs=146.7
Q ss_pred EccCCcccccchhhh----cCCccccEEEeccccccCCc---ccccCccCceEEcCCCCCCcc--cccccccCCCCcEEE
Q 039778 8 DLSHNSFNNSVLSSL----AGLSSLKNLSLAYNRLEGSI---NIEGMNMLESLDLSGNKFNSS--ILSSLTALSSLRKLN 78 (459)
Q Consensus 8 ~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~ 78 (459)
.+++-.++....+.+ +.++.||.+.+.++.+...+ ....|++++.|||+.|-+... .......+|+|+.|+
T Consensus 99 si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LN 178 (505)
T KOG3207|consen 99 SISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLN 178 (505)
T ss_pred hhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcc
Confidence 344445555555554 23677888888888766543 567788888888888765532 233345788888888
Q ss_pred ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCC
Q 039778 79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSN 158 (459)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 158 (459)
++.|..........-..+++|+.|.++.|.++...+...+..+|.|+.|++.+|..... -......+..|++|++++|
T Consensus 179 ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 179 LSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNN 256 (505)
T ss_pred cccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCC
Confidence 88887653333333335788888888888887665566677888888888888742211 2223345677888888888
Q ss_pred cccccccccccccCcccccEEEcccccccccc-chh-----ccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeec
Q 039778 159 NFAKTVTTTQGLCELVHLQDLYIDRNDFIGSL-PWC-----LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSN 232 (459)
Q Consensus 159 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (459)
.+.+.... ...+.++.|+.|+++.+.+.+.- |.. ...+++|++|.+..|++.+.-....+..+++|+.+.+..
T Consensus 257 ~li~~~~~-~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 257 NLIDFDQG-YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccccccc-cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 87654432 24567788888888887765421 211 234678888888888775322234455566677777666
Q ss_pred ceee
Q 039778 233 NHFQ 236 (459)
Q Consensus 233 ~~~~ 236 (459)
+.+.
T Consensus 336 n~ln 339 (505)
T KOG3207|consen 336 NYLN 339 (505)
T ss_pred cccc
Confidence 6554
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=6.7e-12 Score=99.07 Aligned_cols=128 Identities=32% Similarity=0.424 Sum_probs=45.7
Q ss_pred CccccEEEeccccccCCcccc-cCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccc-cCCCCCcEE
Q 039778 25 LSSLKNLSLAYNRLEGSINIE-GMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQEL-DSLSNLEEL 102 (459)
Q Consensus 25 ~~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L 102 (459)
+..++.|+++++.+.....+. .+.+|+.|++++|.+.. ...+..+++|++|++++|.+. .++. .+ ..+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-TT--EE
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-cccc-chHHhCCcCCEE
Confidence 345677777777776655565 46677777777777753 235666777777777777766 2322 22 346777777
Q ss_pred ECcccccCCccCcccccCCCCCcEEecCCCccCCCCccc-ccccCCCcccEEEcc
Q 039778 103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSIGSFPSLKTLYLK 156 (459)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~ 156 (459)
.+++|.+.+...-..+..+++|+.|++.+|-+....... ..+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777777766654556677777777777777665443322 245577888877654
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=5.2e-12 Score=104.31 Aligned_cols=135 Identities=24% Similarity=0.262 Sum_probs=106.5
Q ss_pred ccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCC
Q 039778 316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL 395 (459)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 395 (459)
....+.|+++++++|.++ ++.+++- -.|.++.|+++.|.|... ..+..+++|+.|++++|.++.. ..|-..+-++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNI 354 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCE
Confidence 344567999999999988 7777665 389999999999998753 3467789999999999988744 3444567789
Q ss_pred cEEEcccccccCCCcccccCcccccEEEcCCCcccCC-CchhhcCCCcccEEeccCCcccccCC
Q 039778 396 QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGP-IPSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 396 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
++|.+.+|.+. ....+..+-+|..|++++|++.+. -...++++|-|+++.+.+|++. .+|
T Consensus 355 KtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~v 415 (490)
T KOG1259|consen 355 KTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSV 415 (490)
T ss_pred eeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccc
Confidence 99999999875 334577888999999999988743 3456889999999999999998 444
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=2.7e-11 Score=95.68 Aligned_cols=140 Identities=26% Similarity=0.369 Sum_probs=53.8
Q ss_pred cccccCCcccccCccCceEEcCCCCCCcccccccc-cCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCcc
Q 039778 35 YNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLT-ALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLV 113 (459)
Q Consensus 35 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 113 (459)
...+.....+.+..++++|+|+++.|+. .+.++ .+.+|+.|++++|.+. .+ ..+..+++|++|++++|.+..+
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~-~l--~~l~~L~~L~~L~L~~N~I~~i- 79 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQIT-KL--EGLPGLPRLKTLDLSNNRISSI- 79 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--
T ss_pred cccccccccccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCc-cc--cCccChhhhhhcccCCCCCCcc-
Confidence 3344455566777789999999999864 23455 5789999999999887 33 3577789999999999999887
Q ss_pred Ccccc-cCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccccccc-ccccccCcccccEEEcc
Q 039778 114 VPKDY-RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVT-TTQGLCELVHLQDLYID 182 (459)
Q Consensus 114 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~ 182 (459)
...+ ..+|+|++|++++|++.+...+ ..+..+++|+.|++.+|++..... ....+..+|+|+.||-.
T Consensus 80 -~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 80 -SEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred -ccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 3344 4689999999999998875443 456788999999999998875432 13346778899988743
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.14 E-value=6.5e-13 Score=114.44 Aligned_cols=110 Identities=22% Similarity=0.251 Sum_probs=50.8
Q ss_pred cCceEEcCCCCC-Cccccccc-ccCCCCcEEEccCCcceeeecccc-ccCCCCCcEEECccc-ccCCccCcccccCCCCC
Q 039778 49 MLESLDLSGNKF-NSSILSSL-TALSSLRKLNLMATGFKGTFDVQE-LDSLSNLEELDMSDN-EIDNLVVPKDYRGLRKL 124 (459)
Q Consensus 49 ~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L 124 (459)
.|+.|.+++|+- .......+ .+||++++|.+.+|...++..... -..|++|+.+++..| .+++.........+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466666666652 22222222 356666666666655332222211 223566666666553 23332222233455666
Q ss_pred cEEecCCCccCCCCcccccccCCCcccEEEccCC
Q 039778 125 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSN 158 (459)
Q Consensus 125 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 158 (459)
++++++.+.......+......+..++.+.++||
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 6666665543332223333344455555555544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=5.1e-11 Score=98.58 Aligned_cols=202 Identities=20% Similarity=0.234 Sum_probs=121.4
Q ss_pred ccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCc
Q 039778 194 LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNI 273 (459)
Q Consensus 194 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L 273 (459)
+.-+++|+++.++.|.-. .+ ......-|.|+.+.+.+..+......-+.........- ......+.......--..|
T Consensus 210 l~~f~~l~~~~~s~~~~~-~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~-E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTE-NI-VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGS-EPSTSNGSALVSADTWQEL 286 (490)
T ss_pred hHHhhhhheeeeeccchh-he-eceeecCchhheeeeecccccccccccchhhhcCccCC-CCCccCCceEEecchHhhh
Confidence 344677888888877533 22 22233447788888877655433332222111111100 0111111111122223467
Q ss_pred cEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecc
Q 039778 274 IALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 353 (459)
Q Consensus 274 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 353 (459)
+++++++|.++ .+...+. ..|.++.|++++|.+.... .+..+++|+.|++++|.++ .+..+ ...+.+++.|.+.
T Consensus 287 telDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNIKtL~La 360 (490)
T KOG1259|consen 287 TELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNIKTLKLA 360 (490)
T ss_pred hhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhh-HhhhcCEeeeehh
Confidence 88888888776 4444433 3788888888888876432 3677778888888888776 44333 2347788888888
Q ss_pred ccccccccccccccccCCceEEccCCcccCC-CcccccccCCCcEEEccccccc
Q 039778 354 NNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD-IPESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 354 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 406 (459)
.|.|.+ ..+++.+.+|..|++++|++... -...+.+++.|+.+.+.+|++.
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 887754 44566777888888888886533 2245677788888888888877
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=2.2e-10 Score=113.55 Aligned_cols=131 Identities=27% Similarity=0.283 Sum_probs=72.9
Q ss_pred cCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcc-eeeeccccccCCCCCcEEECcccccCCccCcccccCCCCC
Q 039778 46 GMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGF-KGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL 124 (459)
Q Consensus 46 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 124 (459)
.....+...+.++.+.. .+ .-..+++|++|-+.++.. ........|..++.|++||+++|.- ....|..++.+-+|
T Consensus 521 ~~~~~rr~s~~~~~~~~-~~-~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH-IA-GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchhh-cc-CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhh
Confidence 33455555555555431 11 112344666666666541 1133333466677777777775432 11226667777777
Q ss_pred cEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccc
Q 039778 125 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRN 184 (459)
Q Consensus 125 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 184 (459)
|+|+++++.+.. +|..++++..|.+|++..+...... ......+++|++|.+...
T Consensus 598 ryL~L~~t~I~~---LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 598 RYLDLSDTGISH---LPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred hcccccCCCccc---cchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeecc
Confidence 777777776665 6777777777777777665543222 223444667777766554
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.05 E-value=4.3e-10 Score=109.10 Aligned_cols=113 Identities=29% Similarity=0.438 Sum_probs=80.7
Q ss_pred ccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcC
Q 039778 346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP 425 (459)
Q Consensus 346 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 425 (459)
.++.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|++.+.+|..+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36677777777776677777777777777777777776777777777777777777777777777777777777777777
Q ss_pred CCcccCCCchhhcCC-CcccEEeccCCcccccCC
Q 039778 426 DNHLEGPIPSEFCQL-DYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 426 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p 458 (459)
+|.+.+.+|..+... ..+..+++.+|+..+..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 777777777666543 355667777776666554
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9.9e-12 Score=102.54 Aligned_cols=159 Identities=19% Similarity=0.038 Sum_probs=81.8
Q ss_pred CCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCC--CCCcccCCCCCcEEEccCCccccccchh-HHhcc
Q 039778 268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGS--IPSSFGDMNSLIYLDLSNNQLTGEIPEH-LAMGC 344 (459)
Q Consensus 268 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 344 (459)
..|.+|+.|.+.|..+.+.+...+.+ -.+|+.++++.+..-.. ..-.+.+|+.|..|+++.|....+.... +..-.
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 45556666666666666555555544 45566666665533221 1223455566666666666544333222 22224
Q ss_pred cccceeecccccc--cc-ccccccccccCCceEEccCCc-ccCCCcccccccCCCcEEEccccccc-CCCcccccCcccc
Q 039778 345 FNLEYLLLSNNSL--QG-QLFSKKNNLTKLKRLNLDGNH-FIGDIPESLSNCSSLQGLYISDNDIT-GSIPTWIGNISFL 419 (459)
Q Consensus 345 ~~L~~L~l~~~~i--~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L 419 (459)
++|+.|+++++.- .. ........+|.|..|++++|. +.......|..++.|++|.+++|.-. .+..-.+.+.|+|
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence 5666666666521 11 112223456667777776665 23333344556666777777776432 1111234456677
Q ss_pred cEEEcCCC
Q 039778 420 DAIIMPDN 427 (459)
Q Consensus 420 ~~L~l~~~ 427 (459)
.+|++.||
T Consensus 366 ~yLdv~g~ 373 (419)
T KOG2120|consen 366 VYLDVFGC 373 (419)
T ss_pred EEEEeccc
Confidence 77776666
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1e-11 Score=102.40 Aligned_cols=196 Identities=23% Similarity=0.199 Sum_probs=125.0
Q ss_pred cccEEEeccccccC---CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccc-cccCCCCCcEE
Q 039778 27 SLKNLSLAYNRLEG---SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQ-ELDSLSNLEEL 102 (459)
Q Consensus 27 ~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L 102 (459)
.|++|+++...++- ...++.|++|+-|.+.+.++.+.....+++-.+|+.|+++.|......+.. .+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58888888776553 345677888888888888887777777788888888888876544333222 35678888888
Q ss_pred ECcccccCCccCcccccC-CCCCcEEecCCCccCCC-CcccccccCCCcccEEEccCCcccccccccccccCcccccEEE
Q 039778 103 DMSDNEIDNLVVPKDYRG-LRKLRFLDLSGLRIRDG-SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180 (459)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 180 (459)
+++.|......+.....+ -++|+.|++++++-.-. ..+.-...++|+|.+|+++.+...+. .....+.+++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeee
Confidence 888887655433333333 35788888887643211 12333345788888888887765433 3333566778888888
Q ss_pred ccccccccccchhc---cCCCCCcEEEcCCCcCcCcCCCCcccCCCccc
Q 039778 181 IDRNDFIGSLPWCL---ANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE 226 (459)
Q Consensus 181 l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 226 (459)
++.|. ++.|..+ ...+.|.+|++.++--.+.. ......+++|+
T Consensus 345 lsRCY--~i~p~~~~~l~s~psl~yLdv~g~vsdt~m-el~~e~~~~lk 390 (419)
T KOG2120|consen 345 LSRCY--DIIPETLLELNSKPSLVYLDVFGCVSDTTM-ELLKEMLSHLK 390 (419)
T ss_pred hhhhc--CCChHHeeeeccCcceEEEEeccccCchHH-HHHHHhCcccc
Confidence 88884 3344433 45688888888776432111 22234556554
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=3.1e-10 Score=112.60 Aligned_cols=197 Identities=24% Similarity=0.294 Sum_probs=123.3
Q ss_pred cEEEccCCcccccchhhhcCCccccEEEecccc--ccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEcc
Q 039778 5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNR--LEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLM 80 (459)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (459)
|...+.++.+. ..+... .++.|++|-+..+. +.. ...|..++.|++||+++|.-...+|..++.+-+||+|+++
T Consensus 526 rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 526 RRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred eEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 45555555543 222222 35578888888774 333 3337889999999999877556888889999999999998
Q ss_pred CCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcc
Q 039778 81 ATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (459)
++++. .+|. .+.++..|.+|++..+...... +.....+++||+|.+.......+......+.++.+|+.+.......
T Consensus 604 ~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 604 DTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred CCCcc-ccch-HHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 88876 5554 7888888999988877644433 5556668899999887765443333444455666666665533322
Q ss_pred cccccccccccCccccc----EEEccccccccccchhccCCCCCcEEEcCCCcCc
Q 039778 161 AKTVTTTQGLCELVHLQ----DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLT 211 (459)
Q Consensus 161 ~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 211 (459)
.....+..++.|. .+.+.++.. ...+..+..+.+|+.|.+.+|...
T Consensus 681 ----~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 681 ----LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred ----HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCc
Confidence 1111222333333 223222221 233445667788899998888765
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.90 E-value=2.3e-09 Score=104.12 Aligned_cols=90 Identities=34% Similarity=0.598 Sum_probs=86.0
Q ss_pred CCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEecc
Q 039778 370 KLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS 449 (459)
Q Consensus 370 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 449 (459)
.++.|+|.+|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCC
Q 039778 450 KNNIAGSLPS 459 (459)
Q Consensus 450 ~~~~~~~~p~ 459 (459)
+|+++|.+|+
T Consensus 499 ~N~l~g~iP~ 508 (623)
T PLN03150 499 GNSLSGRVPA 508 (623)
T ss_pred CCcccccCCh
Confidence 9999999994
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=1.6e-09 Score=100.55 Aligned_cols=178 Identities=35% Similarity=0.532 Sum_probs=122.1
Q ss_pred CCccEEEeccCccccccchhhhhcC-CCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVL-PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 349 (459)
..++.+++.++.+. .++..... . ++|+.|+++.+.+... +..+..+++|+.|++..|++. .++.... ..++|+.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN 190 (394)
T ss_pred cceeEEecCCcccc-cCcccccc-chhhcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence 56777788777777 55555443 4 3788888888877633 245677788888888888887 6665432 3778888
Q ss_pred eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL 429 (459)
Q Consensus 350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 429 (459)
|++++|++... +........|+++.+++|++. ..+..+..+.++..+.+.+|++. ..+..+..+++++.|++++|.+
T Consensus 191 L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 191 LDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccc
Confidence 88888887743 222233445888888888644 23445666777777777777776 3356667777788888888888
Q ss_pred cCCCchhhcCCCcccEEeccCCcccccCC
Q 039778 430 EGPIPSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 430 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
+ .++. +....+++.|+++++.++..+|
T Consensus 268 ~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 268 S-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred c-cccc-ccccCccCEEeccCccccccch
Confidence 7 4443 7777888888888887775443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=1.1e-10 Score=104.88 Aligned_cols=167 Identities=28% Similarity=0.460 Sum_probs=75.3
Q ss_pred EEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccc
Q 039778 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 355 (459)
Q Consensus 276 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 355 (459)
.+++.|.+. ++|..+.. +..|+.+.+..|.+. ..+..+..+..|+.++++.|++. .+|..++ .--|+.|-+++|
T Consensus 80 aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~sNN 153 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIVSNN 153 (722)
T ss_pred hhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEEecC
Confidence 344444444 44444433 344444444444443 33344444445555555555544 4444443 123444445555
Q ss_pred ccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCch
Q 039778 356 SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS 435 (459)
Q Consensus 356 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 435 (459)
+++ .+++.++..+.|..|+.+.|++. .++..+..+.+|+.|.+..|++. .+|+.+.. -.|..||++.|+++ .+|.
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecch
Confidence 444 23333334445555555555444 23333444444455555554444 33433332 23444455544444 4444
Q ss_pred hhcCCCcccEEeccCCcc
Q 039778 436 EFCQLDYLEILDLSKNNI 453 (459)
Q Consensus 436 ~~~~~~~L~~L~l~~~~~ 453 (459)
.|++++.|+.|-|.+|++
T Consensus 229 ~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhhheeeeeccCCC
Confidence 455555555555554444
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=2.6e-10 Score=94.27 Aligned_cols=214 Identities=21% Similarity=0.163 Sum_probs=115.7
Q ss_pred CcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEE
Q 039778 124 LRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVL 203 (459)
Q Consensus 124 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 203 (459)
++-+.+.++.+.........-..++.++.+++.+|.++++......+.++|.|+.|+++.|++...+...-....+|+++
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 34455556655543323222336677888888888887776666667788888888888887654333222345678888
Q ss_pred EcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCcc
Q 039778 204 HVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKL 283 (459)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (459)
-+.+..+.=.-....+..+|.++++.++.|........+.. ....-+.++++...+|..
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c---------------------~e~~s~~v~tlh~~~c~~ 185 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNC---------------------IEDWSTEVLTLHQLPCLE 185 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccc---------------------ccccchhhhhhhcCCcHH
Confidence 88877665222345566778888888887743210000000 000123344444444432
Q ss_pred ccccc--hhhhhcCCCccEEEeecCcCCCC-CCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccc
Q 039778 284 QGHIP--VEIGKVLPNLGFLSITFNAFNGS-IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG 359 (459)
Q Consensus 284 ~~~~~--~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 359 (459)
. .+. ..+...+|++..+.+..|.+.+. ....+..++.+--|+++.+++...........++.|..|.++++++.+
T Consensus 186 ~-~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 186 Q-LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred H-HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 2 100 11122356666666666655432 223344445555566666665533333344456666666666665543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.2e-09 Score=69.56 Aligned_cols=57 Identities=47% Similarity=0.475 Sum_probs=22.0
Q ss_pred CcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCC
Q 039778 322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGN 379 (459)
Q Consensus 322 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 379 (459)
|++|++++|++. .++...+.++++|++|++++|.+....+.+|..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333444444333 333333333334444444433333333333333333333333333
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=6.1e-09 Score=96.70 Aligned_cols=192 Identities=32% Similarity=0.472 Sum_probs=137.7
Q ss_pred EEEeccccc-cCCcccccCccCceEEcCCCCCCcccccccccCC-CCcEEEccCCcceeeeccccccCCCCCcEEECccc
Q 039778 30 NLSLAYNRL-EGSINIEGMNMLESLDLSGNKFNSSILSSLTALS-SLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDN 107 (459)
Q Consensus 30 ~L~l~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 107 (459)
.++...+.+ .+...+..++.++.|++.++.++ ..+....... +|+.|+++++.+. .++ ..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhh-hhhhccccccccccCCc
Confidence 567777766 44555666688888888888876 4555556664 8888888888776 222 25678888999999988
Q ss_pred ccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccc
Q 039778 108 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFI 187 (459)
Q Consensus 108 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 187 (459)
.+.+. +......+.|+.++++++.+.. ++..+.....|+++.+.+|....... .+..+.++..+.+.++++.
T Consensus 174 ~l~~l--~~~~~~~~~L~~L~ls~N~i~~---l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 174 DLSDL--PKLLSNLSNLNNLDLSGNKISD---LPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred hhhhh--hhhhhhhhhhhheeccCCcccc---CchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCceee
Confidence 88887 4444578888888898888876 55555566668888888885333322 3566777777777777665
Q ss_pred cccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceee
Q 039778 188 GSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236 (459)
Q Consensus 188 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 236 (459)
.. +..+..++.+++|+++++.+. .+.. +....+++.++++++.+.
T Consensus 246 ~~-~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 246 DL-PESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ec-cchhccccccceecccccccc-cccc--ccccCccCEEeccCcccc
Confidence 32 455667778899999988877 3322 778888889988887664
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=3.1e-09 Score=68.88 Aligned_cols=60 Identities=33% Similarity=0.516 Sum_probs=34.5
Q ss_pred CCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcc
Q 039778 394 SLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453 (459)
Q Consensus 394 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 453 (459)
+|++|++++|.+....+..|..+++|+.|++++|.+....++.|..+++|+.|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666665533334555566666666666666544445556666666666666653
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=3.3e-10 Score=101.92 Aligned_cols=153 Identities=25% Similarity=0.356 Sum_probs=105.8
Q ss_pred CcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccc
Q 039778 266 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF 345 (459)
Q Consensus 266 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 345 (459)
....+..|+.++++.|.++ ..|..++. -.|+.|.+++|+++ .++..++..+.|..|+.+.|++. .++..+. .+.
T Consensus 116 ~i~~L~~lt~l~ls~NqlS-~lp~~lC~--lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~ 189 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLS-HLPDGLCD--LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLT 189 (722)
T ss_pred hhhhhhHHHHhhhccchhh-cCChhhhc--CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHH
Confidence 3455667778888888777 67776663 45788888888877 45566667778888888888776 6666654 377
Q ss_pred ccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCccccc---CcccccEE
Q 039778 346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIG---NISFLDAI 422 (459)
Q Consensus 346 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L 422 (459)
+|+.|.+..|.+.. .++.+..+ .|..|+++.|++. .+|..|.+|..|++|.|++|++. ..|..+. ...-.++|
T Consensus 190 slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL 265 (722)
T KOG0532|consen 190 SLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYL 265 (722)
T ss_pred HHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeee
Confidence 88888888877763 44444444 3777888888777 56777888888888888888877 3333222 23445777
Q ss_pred EcCCCc
Q 039778 423 IMPDNH 428 (459)
Q Consensus 423 ~l~~~~ 428 (459)
+..-|+
T Consensus 266 ~~qA~q 271 (722)
T KOG0532|consen 266 STQACQ 271 (722)
T ss_pred cchhcc
Confidence 777773
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=6.1e-09 Score=86.36 Aligned_cols=207 Identities=18% Similarity=0.146 Sum_probs=128.2
Q ss_pred ccEEEeccccccCCccc----ccCccCceEEcCCCCCCcc--cccccccCCCCcEEEccCCcceeeeccccc-cCCCCCc
Q 039778 28 LKNLSLAYNRLEGSINI----EGMNMLESLDLSGNKFNSS--ILSSLTALSSLRKLNLMATGFKGTFDVQEL-DSLSNLE 100 (459)
Q Consensus 28 L~~L~l~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~ 100 (459)
+.-+.+.++.+....++ ..+.+++++|+.+|.+++. ....+.++|+|+.|+++.|.....+. .. ....+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceE
Confidence 33555556655544433 2467888889988888752 34456788999999998887765443 33 3567888
Q ss_pred EEECcccccCCccCcccccCCCCCcEEecCCCccCCCCccccccc-CCCcccEEEccCCcccccccccccccCcccccEE
Q 039778 101 ELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIG-SFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDL 179 (459)
Q Consensus 101 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 179 (459)
+|-+.++.+.-......+..+|.++++.++.|.+.........+. -.+.++++.+.+|....+........-.+++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 888888877655556677788888888888774432211112222 1235666666666544333322223345677777
Q ss_pred Eccccccccccc-hhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceee
Q 039778 180 YIDRNDFIGSLP-WCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236 (459)
Q Consensus 180 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 236 (459)
.+..|++.+... ..+..++.+-.|.+..+++.+......+.+++.|..|.+..+++.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 777776644222 223345566667777777665455566777888888888777654
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.60 E-value=7.3e-09 Score=100.28 Aligned_cols=200 Identities=23% Similarity=0.264 Sum_probs=119.9
Q ss_pred CCcEEEccCCcccccchhhhcCCccccEEEeccccccC-----C--cccc----------cCccCceEEcCCCC-CCccc
Q 039778 3 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-----S--INIE----------GMNMLESLDLSGNK-FNSSI 64 (459)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~--~~~~----------~l~~L~~L~l~~~~-~~~~~ 64 (459)
+++.+++.+..+.....+.+.... |+++.+.+-.... . .++. .-.+|++|++++.. +...-
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 456666766666655555555544 8888887654221 1 0110 12578899998865 22222
Q ss_pred ccccc-cCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCccccc
Q 039778 65 LSSLT-ALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS 143 (459)
Q Consensus 65 ~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 143 (459)
+..++ .+|+|++|.+.+..+...--.....++++|..||++++++..+ .+++++++|+.|.+.+-.+.....+ ..
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~~l-~~ 215 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQDL-ID 215 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchhhH-HH
Confidence 22333 6799999998887664322233566789999999999988886 6788888888888888777653223 34
Q ss_pred ccCCCcccEEEccCCcccccccc----cccccCcccccEEEccccccccccchh-ccCCCCCcEEEcCC
Q 039778 144 IGSFPSLKTLYLKSNNFAKTVTT----TQGLCELVHLQDLYIDRNDFIGSLPWC-LANLTSLRVLHVPD 207 (459)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~ 207 (459)
+.++++|+.||++.......... .+--..+|+|+.|+.++..+.+..-.. +...++|+.+...+
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 55788889998887665433211 111123566666666665544322222 22345555544433
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=1.4e-08 Score=94.42 Aligned_cols=193 Identities=35% Similarity=0.440 Sum_probs=120.2
Q ss_pred CCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcc-cccCccCceEEcCCCCCCcccccccccCCCCcEEEccC
Q 039778 3 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN-IEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMA 81 (459)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (459)
.+..+++..+.+.. ....+..+++|+.+++.++.+..... +..+++|++|++++|.|++ ...+..++.|+.|++.+
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc--ccchhhccchhhheecc
Confidence 34455555555542 23335667888888888888877777 7788888888888888754 33466667788888888
Q ss_pred CcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778 82 TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA 161 (459)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 161 (459)
|.+.. ...+..++.|+.++++++.+..+.... ...+.+++.+.+.++.+... ..+..+..+..+++..+.+.
T Consensus 150 N~i~~---~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i----~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 150 NLISD---ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI----EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred Ccchh---ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc----cchHHHHHHHHhhcccccce
Confidence 87762 234555788888888888877763101 46777888888888776543 22233344444455555554
Q ss_pred ccccccccccCcc--cccEEEccccccccccchhccCCCCCcEEEcCCCcCc
Q 039778 162 KTVTTTQGLCELV--HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLT 211 (459)
Q Consensus 162 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 211 (459)
..... .... +|+.+.+.++++.... ..+..+..+..+++.++.+.
T Consensus 222 ~~~~l----~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 222 KLEGL----NELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eccCc----ccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccc
Confidence 33222 1222 3677777776655321 23445566666666666544
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=8.3e-09 Score=95.85 Aligned_cols=197 Identities=30% Similarity=0.359 Sum_probs=142.3
Q ss_pred cCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcE
Q 039778 23 AGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEE 101 (459)
Q Consensus 23 ~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 101 (459)
..+..++.+++..+.+.. ...+..+.+|+.|++.++.+.. ....+..+++|++|+++++.+.. ...+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~---i~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK---LEGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccc---ccchhhccchhh
Confidence 456777788888887776 3448889999999999999863 33337889999999999998873 235667788999
Q ss_pred EECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEc
Q 039778 102 LDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181 (459)
Q Consensus 102 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 181 (459)
|++++|.+..+ ..+..++.|+.+++.++++...... . ...+.+++.+.+.++.+..... +..+..+..+++
T Consensus 145 L~l~~N~i~~~---~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~----~~~~~~l~~~~l 215 (414)
T KOG0531|consen 145 LNLSGNLISDI---SGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEG----LDLLKKLVLLSL 215 (414)
T ss_pred heeccCcchhc---cCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccc----hHHHHHHHHhhc
Confidence 99999999886 4566699999999999998764221 1 4678899999999988764432 233444555577
Q ss_pred cccccccccchhccCCC--CCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceee
Q 039778 182 DRNDFIGSLPWCLANLT--SLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236 (459)
Q Consensus 182 ~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 236 (459)
.++.+....+ +.... +|+.++++++.+.. . ...+..+..+..+++..+.+.
T Consensus 216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~-~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 216 LDNKISKLEG--LNELVMLHLRELYLSGNRISR-S-PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccccceeccC--cccchhHHHHHHhcccCcccc-c-cccccccccccccchhhcccc
Confidence 7776654332 12222 38899999988762 2 145667778888888877654
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.47 E-value=2e-08 Score=82.28 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=151.0
Q ss_pred CCCcEEEccCCcccccchhhh----cCCccccEEEecccccc---C---------CcccccCccCceEEcCCCCCCcccc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSL----AGLSSLKNLSLAYNRLE---G---------SINIEGMNMLESLDLSGNKFNSSIL 65 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~---~---------~~~~~~l~~L~~L~l~~~~~~~~~~ 65 (459)
..+..++||+|.+.....+.+ ++-++|+..+++.-... + ..++.+||+|+.+++|+|.+....+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 457789999998876655554 44578888888754322 1 2246689999999999998876655
Q ss_pred cc----cccCCCCcEEEccCCcceeeecc------------ccccCCCCCcEEECcccccCCccCc---ccccCCCCCcE
Q 039778 66 SS----LTALSSLRKLNLMATGFKGTFDV------------QELDSLSNLEELDMSDNEIDNLVVP---KDYRGLRKLRF 126 (459)
Q Consensus 66 ~~----~~~l~~L~~L~l~~~~~~~~~~~------------~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~ 126 (459)
.. +++-..|.+|.+.+|+....... +...+-|.|+++++..|++..-.-. ..+..-..|+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 54 45678999999999977532111 1233457899999998887554211 11222257888
Q ss_pred EecCCCccCCCCc---ccccccCCCcccEEEccCCccccccc--ccccccCcccccEEEccccccccccch----hcc--
Q 039778 127 LDLSGLRIRDGSK---VLHSIGSFPSLKTLYLKSNNFAKTVT--TTQGLCELVHLQDLYIDRNDFIGSLPW----CLA-- 195 (459)
Q Consensus 127 L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~-- 195 (459)
+.+..|.+..... ....+..+.+|+.|++..|.++...+ ....+..++.|++|.+.+|-++..... .|.
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~ 269 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK 269 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence 8888887754311 12234578889999999888764322 233466777889999988865543322 122
Q ss_pred CCCCCcEEEcCCCcCcCcCCCC------cccCCCcccEEEeecceee
Q 039778 196 NLTSLRVLHVPDNQLTGNLSSS------PLMHLTSIEVLLLSNNHFQ 236 (459)
Q Consensus 196 ~~~~L~~L~l~~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~ 236 (459)
..++|..|.+.++...+.+... .-.++|-|..+.+.+|.+.
T Consensus 270 ~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 270 FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 2577888888777654332111 1135566777777777664
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.38 E-value=7e-07 Score=70.16 Aligned_cols=108 Identities=23% Similarity=0.250 Sum_probs=51.9
Q ss_pred cccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcc
Q 039778 27 SLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD 106 (459)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 106 (459)
+...++|++|.+.....+..+++|.+|.+.+|+|+.+.+..-..+++ |++|.+.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~-------------------------l~~L~Ltn 97 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPN-------------------------LKTLILTN 97 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccc-------------------------cceEEecC
Confidence 34444555554444444555555555555555554444433334444 45555555
Q ss_pred cccCCccCcccccCCCCCcEEecCCCccCCCCcccc-cccCCCcccEEEccCCc
Q 039778 107 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH-SIGSFPSLKTLYLKSNN 159 (459)
Q Consensus 107 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 159 (459)
|.+..+..-.-+..||+|++|.+-+|.+.+...... .+..+|+|+.||+++..
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 444444333444555555555555554443222211 34456666666665543
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=6.8e-09 Score=96.46 Aligned_cols=186 Identities=24% Similarity=0.253 Sum_probs=119.8
Q ss_pred ccCCcccccCccCceEEcCCCCCCcccccccccC-CCCcEEEccCCcce-ee-ec--ccccc---CCCCCcEEECccccc
Q 039778 38 LEGSINIEGMNMLESLDLSGNKFNSSILSSLTAL-SSLRKLNLMATGFK-GT-FD--VQELD---SLSNLEELDMSDNEI 109 (459)
Q Consensus 38 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~-~~-~~--~~~~~---~~~~L~~L~l~~~~~ 109 (459)
..++..+..+..|++|.+.+|.+.. ...+..+ ..|++|...+.--. .. +. ...+. -...|.+.+++.|.+
T Consensus 99 pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 99 PTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL 176 (1096)
T ss_pred CCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH
Confidence 3345667788899999999998753 2222222 24455544322000 00 00 00111 134677788888877
Q ss_pred CCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccc
Q 039778 110 DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGS 189 (459)
Q Consensus 110 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 189 (459)
..+ ..++.-++.++.|++++|++... ..+..+++|++|++++|.+....... ...+ +|+.|.+.+|.++..
T Consensus 177 ~~m--D~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc-~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 177 VLM--DESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLS--MVGC-KLQLLNLRNNALTTL 247 (1096)
T ss_pred HhH--HHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccc--hhhh-hheeeeecccHHHhh
Confidence 666 56778888899999999888763 26778888999999988876655432 2233 388888888876532
Q ss_pred cchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceee
Q 039778 190 LPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236 (459)
Q Consensus 190 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 236 (459)
..+.++++|+.||+++|-+.+.-....+..+..|++|++.+|++.
T Consensus 248 --~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 --RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred --hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 345677888888888887664434455677778888888888764
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=2.5e-07 Score=76.00 Aligned_cols=185 Identities=20% Similarity=0.221 Sum_probs=127.3
Q ss_pred CCCccEEEeccCccccccchhhhhcCC---CccEEEeecCcCC---C-------CCCCcccCCCCCcEEEccCCcccccc
Q 039778 270 RKNIIALDISYNKLQGHIPVEIGKVLP---NLGFLSITFNAFN---G-------SIPSSFGDMNSLIYLDLSNNQLTGEI 336 (459)
Q Consensus 270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~---~L~~L~L~~~~~~---~-------~~~~~~~~~~~L~~L~l~~~~~~~~~ 336 (459)
...++.++++||.+..+-..+++..+. +|+..+++.-... + .....+.+||.|+..++++|.+.-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 567889999999988766666665444 4555555432111 1 12345678899999999999876455
Q ss_pred chh---HHhcccccceeeccccccccc----cccc---------cccccCCceEEccCCcccCCC----cccccccCCCc
Q 039778 337 PEH---LAMGCFNLEYLLLSNNSLQGQ----LFSK---------KNNLTKLKRLNLDGNHFIGDI----PESLSNCSSLQ 396 (459)
Q Consensus 337 ~~~---~~~~~~~L~~L~l~~~~i~~~----~~~~---------~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~ 396 (459)
|.. +..+.+.|++|.+++|.+.-. +..+ ....|.|+++....|++.+-. +..+.....|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 433 334578899999999977522 1111 134588999999999876332 22334446899
Q ss_pred EEEcccccccCCCc-----ccccCcccccEEEcCCCcccCC----CchhhcCCCcccEEeccCCccc
Q 039778 397 GLYISDNDITGSIP-----TWIGNISFLDAIIMPDNHLEGP----IPSEFCQLDYLEILDLSKNNIA 454 (459)
Q Consensus 397 ~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 454 (459)
++.+..|.|..... ..+..+.+|+.|+|.+|-++.. +...++.++.|+.|.+.+|-++
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 99999998875422 3455789999999999977643 3345678888999999999765
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.28 E-value=5.1e-07 Score=87.74 Aligned_cols=131 Identities=29% Similarity=0.377 Sum_probs=76.9
Q ss_pred CCcEEEccCCc-ccccch-hhhcCCccccEEEeccccccCC---cccccCccCceEEcCCCCCCcccccccccCCCCcEE
Q 039778 3 NLKFLDLSHNS-FNNSVL-SSLAGLSSLKNLSLAYNRLEGS---INIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKL 77 (459)
Q Consensus 3 ~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 77 (459)
+|+.|+++|.. +...-+ ..-..+|.|++|.+++-.+... ....++|+|..||+++++++.. ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 56777777653 221222 2223467777777777655432 2245677777777777777543 566777777777
Q ss_pred EccCCcceeeeccccccCCCCCcEEECcccccCCcc-C----cccccCCCCCcEEecCCCccC
Q 039778 78 NLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLV-V----PKDYRGLRKLRFLDLSGLRIR 135 (459)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~----~~~~~~~~~L~~L~l~~~~~~ 135 (459)
.+.+-++........+..+++|++||+|........ . -+.-..+|+||.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 777766665455556667777777777765443321 0 011223566666666665544
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=1.1e-07 Score=69.66 Aligned_cols=134 Identities=19% Similarity=0.161 Sum_probs=83.6
Q ss_pred CccEEEeecCcCCCC--CCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778 297 NLGFLSITFNAFNGS--IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL 374 (459)
Q Consensus 297 ~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 374 (459)
.+..++|+.|.+... ....+.....|+..++++|.+. ..|..+...+|.++.+++.+|+|.+. |+.+..+|.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhc
Confidence 355667777766522 1222344456777788888887 77777777777888888888888754 3447788888888
Q ss_pred EccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCc
Q 039778 375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP 434 (459)
Q Consensus 375 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 434 (459)
+++.|++. ..|..+..+.++..|+..+|.+. ++|..+..........+.+..+.+.-+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 88888876 33444545777777888777766 555443322222222344445544333
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.1e-06 Score=51.92 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=16.2
Q ss_pred CCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 394 SLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 394 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
+|++|++++|++. .+|+.+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555444 33333444555555555555444
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.14 E-value=5.2e-06 Score=65.38 Aligned_cols=109 Identities=21% Similarity=0.279 Sum_probs=83.4
Q ss_pred CCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCccc
Q 039778 72 SSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLK 151 (459)
Q Consensus 72 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 151 (459)
.....++++.+.+. ....+..+++|.+|.+++|+|+.+. +.-...+++|+.|.+.+|.+.....+ .-+..||+|+
T Consensus 42 d~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLE 116 (233)
T ss_pred cccceecccccchh---hcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhc-chhccCCccc
Confidence 45667778777665 2235778899999999999999885 44555678999999999988765333 3466899999
Q ss_pred EEEccCCcccccccc-cccccCcccccEEEccccc
Q 039778 152 TLYLKSNNFAKTVTT-TQGLCELVHLQDLYIDRND 185 (459)
Q Consensus 152 ~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 185 (459)
.|.+-+|++...... ...++.+++|+.|+..+-.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999999998754432 3457889999999988753
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.5e-07 Score=68.97 Aligned_cols=83 Identities=25% Similarity=0.323 Sum_probs=41.1
Q ss_pred ccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcC
Q 039778 346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP 425 (459)
Q Consensus 346 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 425 (459)
.|+..++++|.+..........+|.++.+++.+|.+. .+|..+..++.|+.|+++.|++. ..|..+..+.++..|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 4444555555554322222233345555555555554 33444555555555555555555 444444445555555555
Q ss_pred CCccc
Q 039778 426 DNHLE 430 (459)
Q Consensus 426 ~~~~~ 430 (459)
++...
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55444
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=7.8e-08 Score=89.67 Aligned_cols=122 Identities=26% Similarity=0.262 Sum_probs=63.8
Q ss_pred EEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCccee
Q 039778 7 LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKG 86 (459)
Q Consensus 7 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 86 (459)
.+++-|.+. ...+++.-++.|++|+|+.|++.+-.++..|++|++|||+.|.+.....-.+..|. |+.|.+.+|....
T Consensus 169 a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 169 ASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT 246 (1096)
T ss_pred hhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh
Confidence 334444433 33444444556666666666665555566666666666666665433333344444 6666666655441
Q ss_pred eeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCc
Q 039778 87 TFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR 133 (459)
Q Consensus 87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 133 (459)
...+.++.+|+.||++.|-+.+...-..+..+..|+.|.+.+|-
T Consensus 247 ---L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 247 ---LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ---hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 22445556666666666655444333334445555555555553
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=9.1e-06 Score=47.93 Aligned_cols=39 Identities=33% Similarity=0.467 Sum_probs=23.2
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCC
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGS 41 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 41 (459)
++|++|++++|.+++. +..+..+++|+.|++++|.+.+.
T Consensus 1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCC
Confidence 4667777777776643 33466677777777777665543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2.6e-05 Score=70.05 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccc-ccccccccccccccCCce
Q 039778 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN-SLQGQLFSKKNNLTKLKR 373 (459)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~ 373 (459)
+.+++.|++++|.+... + . -..+|+.|.+.+|.-...+|..+ .++|++|++++| .+. .++ ++|+.
T Consensus 51 ~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ESVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cccce
Confidence 68999999999977633 3 1 22479999999974333666543 468999999998 443 222 35777
Q ss_pred EEccCCcccC--CCcccccccCCCcEEEccccc-ccC-CCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEecc
Q 039778 374 LNLDGNHFIG--DIPESLSNCSSLQGLYISDND-ITG-SIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS 449 (459)
Q Consensus 374 L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 449 (459)
|++.++.... .+| ++|+.|.+.++. ... .++.. -.++|+.|++++|... ..|+.+. .+|+.|+++
T Consensus 117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred EEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 7776554321 122 235555553321 110 01100 0145666666666544 3343322 355556655
Q ss_pred CC
Q 039778 450 KN 451 (459)
Q Consensus 450 ~~ 451 (459)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.98 E-value=1.3e-05 Score=61.43 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=26.9
Q ss_pred ccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCC
Q 039778 316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL 395 (459)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 395 (459)
|.++++|+.+.+.. .+. .+....+.++++|+.+.+..+ +......+|..+++|+.+.+.+ .+......+|..+.+|
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 33344444444432 222 334444444444444444432 3322333344444444444433 2221222333444444
Q ss_pred cEEEcc
Q 039778 396 QGLYIS 401 (459)
Q Consensus 396 ~~L~l~ 401 (459)
+.+.+.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 444443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.94 E-value=2.1e-05 Score=60.14 Aligned_cols=127 Identities=24% Similarity=0.261 Sum_probs=70.0
Q ss_pred cchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccc
Q 039778 287 IPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKN 366 (459)
Q Consensus 287 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 366 (459)
++...+..+.+|+.+.+.. .+.......|.++++|+.+.+.++ +. .+....+.++++++.+.+.+ .+......+|.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence 3445555677889888874 455566777888888999999875 55 77778888888899999976 44444556777
Q ss_pred cccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCccccc
Q 039778 367 NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLD 420 (459)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 420 (459)
.+++|+.+.+..+ +.......+.++ +|+.+.+.. .+.......|.++++|+
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 8889999999765 554555667776 888888876 44434445677776653
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.87 E-value=4.7e-06 Score=68.60 Aligned_cols=89 Identities=25% Similarity=0.313 Sum_probs=52.3
Q ss_pred cCCccccEEEeccccccCCcccccCccCceEEcCCC--CCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCc
Q 039778 23 AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGN--KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLE 100 (459)
Q Consensus 23 ~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 100 (459)
..+..|+.+++.+..++....+..+++|+.|.++.| ++...+......+|+|++|++++|++........+..+.+|.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 345566666666666666666777777777777777 444334444445577777777776665322223344455566
Q ss_pred EEECcccccCC
Q 039778 101 ELDMSDNEIDN 111 (459)
Q Consensus 101 ~L~l~~~~~~~ 111 (459)
.|++.+|..+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 66666655443
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=0.0001 Score=66.23 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=79.1
Q ss_pred CCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCC-ccccccchhHHhccccc
Q 039778 269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN-QLTGEIPEHLAMGCFNL 347 (459)
Q Consensus 269 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L 347 (459)
.+..++.|++++|.+. .+|. ..++|+.|.+++|.-....+..+ .++|+.|++.+| .+. .+ .++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL-------P~sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL-------PESV 114 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc-------cccc
Confidence 3567888888888766 5662 24578888888765544444433 257888888887 443 33 3467
Q ss_pred ceeeccccccccccccccccc-cCCceEEccCCccc--CCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEc
Q 039778 348 EYLLLSNNSLQGQLFSKKNNL-TKLKRLNLDGNHFI--GDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIM 424 (459)
Q Consensus 348 ~~L~l~~~~i~~~~~~~~~~~-~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 424 (459)
+.|++..+.... +..+ ++|+.|.+.++... ...+..++ ++|++|.+.+|... .+|+.+- .+|+.|++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 777776554331 1222 36777777543311 11121122 57888888887765 3444332 57777777
Q ss_pred CCC
Q 039778 425 PDN 427 (459)
Q Consensus 425 ~~~ 427 (459)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 665
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.85 E-value=1.4e-06 Score=83.58 Aligned_cols=130 Identities=28% Similarity=0.267 Sum_probs=59.2
Q ss_pred CccccEEEecccc-ccC---CcccccCccCceEEcCCC-C-CCccc---ccccccCCCCcEEEccCCcceeeeccccccC
Q 039778 25 LSSLKNLSLAYNR-LEG---SINIEGMNMLESLDLSGN-K-FNSSI---LSSLTALSSLRKLNLMATGFKGTFDVQELDS 95 (459)
Q Consensus 25 ~~~L~~L~l~~~~-~~~---~~~~~~l~~L~~L~l~~~-~-~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 95 (459)
++.|+.+.+.++. +.+ ......++.|++|+++++ . +.... ......|++|+.|++.++....+.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4556666665553 222 122344556666666552 1 11111 1122345556666665555222333333332
Q ss_pred -CCCCcEEECcccc-cCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEE
Q 039778 96 -LSNLEELDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 154 (459)
Q Consensus 96 -~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 154 (459)
|++|++|.+.+|. +++..+......++.|++|+++.+....+..+.....++++++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 5566666655554 4444434444455566666666554433322333333455444443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.73 E-value=2.4e-06 Score=82.07 Aligned_cols=116 Identities=19% Similarity=0.164 Sum_probs=62.4
Q ss_pred cCccCceEEcCCCC-CCcc-cccccccCCCCcEEEccCC-cceeeec---cccccCCCCCcEEECcccc-cCCccCcccc
Q 039778 46 GMNMLESLDLSGNK-FNSS-ILSSLTALSSLRKLNLMAT-GFKGTFD---VQELDSLSNLEELDMSDNE-IDNLVVPKDY 118 (459)
Q Consensus 46 ~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 118 (459)
.++.|+.+.+.++. +++. .......+++|+.|+++++ ......+ ......+++|+.++++.+. +++..+....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36677777777764 3322 2344556777777777652 1111111 1123345677777777666 4444433333
Q ss_pred cCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA 161 (459)
Q Consensus 119 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 161 (459)
..+++|++|.+.++....+..+......++.|++|+++++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3466777777655552222334444556667777777766553
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=1.3e-06 Score=72.11 Aligned_cols=103 Identities=28% Similarity=0.263 Sum_probs=70.0
Q ss_pred CccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEEC
Q 039778 25 LSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDM 104 (459)
Q Consensus 25 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 104 (459)
+.+.+.|+++||.+.+......|+.|++|.|+-|+|+ ....+..|++|+.|+|..|.+.+-.....+.++++|++|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs--sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS--SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccc--cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 4577888888888777777778888888888888875 34557788888888888777764334445667777777777
Q ss_pred cccccCCccCc----ccccCCCCCcEEec
Q 039778 105 SDNEIDNLVVP----KDYRGLRKLRFLDL 129 (459)
Q Consensus 105 ~~~~~~~~~~~----~~~~~~~~L~~L~l 129 (459)
..|.......+ ..+.-+|+|++|+=
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccC
Confidence 66654332211 12456666766643
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=2.6e-06 Score=70.43 Aligned_cols=98 Identities=24% Similarity=0.227 Sum_probs=60.4
Q ss_pred CCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCc-ccccccCCCcEEE
Q 039778 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIP-ESLSNCSSLQGLY 399 (459)
Q Consensus 321 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 399 (459)
+.+.|+++||.++ .+ .+...++.|+.|.|+-|+|+. ...+..|++|++|+|..|.+.+... ..+.++++|+.|+
T Consensus 20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 5566677777766 32 334457777777777777764 4455667777777777776653321 2345677777777
Q ss_pred cccccccCCCcc-----cccCcccccEEE
Q 039778 400 ISDNDITGSIPT-----WIGNISFLDAII 423 (459)
Q Consensus 400 l~~~~~~~~~~~-----~~~~~~~L~~L~ 423 (459)
|..|+=.+..+. .+.-+|+|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 777765544442 334466776653
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=8.3e-05 Score=61.42 Aligned_cols=106 Identities=24% Similarity=0.235 Sum_probs=69.6
Q ss_pred hcccccceeeccccccccccccccccccCCceEEccCC--cccCCCcccccccCCCcEEEcccccccC-CCcccccCccc
Q 039778 342 MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGN--HFIGDIPESLSNCSSLQGLYISDNDITG-SIPTWIGNISF 418 (459)
Q Consensus 342 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 418 (459)
..+..|+.+.+.++.++. ...|..+|+|++|.++.| .+....+.....+++|+++++++|++.. .-...+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 346677888777776654 456667788899999888 4444444445566888999999888762 11123445677
Q ss_pred ccEEEcCCCcccCCCc---hhhcCCCcccEEecc
Q 039778 419 LDAIIMPDNHLEGPIP---SEFCQLDYLEILDLS 449 (459)
Q Consensus 419 L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 449 (459)
|..|++.+|..++... ..|.-+++|..|+-.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 8888888887765321 234566777666543
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=5.8e-05 Score=59.69 Aligned_cols=81 Identities=31% Similarity=0.352 Sum_probs=64.0
Q ss_pred CcEEEccCCcccccchhhhcCCccccEEEeccccccCCccc---c-cCccCceEEcCCCC-CCcccccccccCCCCcEEE
Q 039778 4 LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI---E-GMNMLESLDLSGNK-FNSSILSSLTALSSLRKLN 78 (459)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~-~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~ 78 (459)
++.+|-+++.|.....+-+..++.++.|.+.+|.-.+...+ . -.++|++|++++|. |++.....+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 57788889999888888888999999999998865543222 2 45789999999885 8888888888899999888
Q ss_pred ccCCcc
Q 039778 79 LMATGF 84 (459)
Q Consensus 79 l~~~~~ 84 (459)
+..-+.
T Consensus 183 l~~l~~ 188 (221)
T KOG3864|consen 183 LYDLPY 188 (221)
T ss_pred hcCchh
Confidence 865443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00039 Score=55.19 Aligned_cols=76 Identities=21% Similarity=0.106 Sum_probs=32.9
Q ss_pred ecCcCCCCCCCcccCCCCCcEEEccCCc-cccccchhHHhcccccceeecccc-ccccccccccccccCCceEEccCC
Q 039778 304 TFNAFNGSIPSSFGDMNSLIYLDLSNNQ-LTGEIPEHLAMGCFNLEYLLLSNN-SLQGQLFSKKNNLTKLKRLNLDGN 379 (459)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~ 379 (459)
+++.+..+....+..++.++.|.+.+|. +.+...+.+....++|+.|++++| +|++.....+..+++|+.|.+.+-
T Consensus 109 sds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 109 SDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred CCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 3333333333444444555555555542 222222223333445555555544 344444444444445555444443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.77 E-value=0.0053 Score=27.61 Aligned_cols=16 Identities=56% Similarity=0.821 Sum_probs=7.3
Q ss_pred cccEEeccCCcccccCC
Q 039778 442 YLEILDLSKNNIAGSLP 458 (459)
Q Consensus 442 ~L~~L~l~~~~~~~~~p 458 (459)
+|+.|+|++|+++ ++|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 4666666666654 544
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.58 E-value=0.0048 Score=30.00 Aligned_cols=17 Identities=65% Similarity=0.884 Sum_probs=12.6
Q ss_pred cccEEeccCCcccccCCC
Q 039778 442 YLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 442 ~L~~L~l~~~~~~~~~p~ 459 (459)
+|+.|++++|+++ ++|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp TESEEEETSSEES-EEGT
T ss_pred CccEEECCCCcCE-eCCh
Confidence 4678888888777 7774
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.09 E-value=0.011 Score=28.77 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=7.8
Q ss_pred ccEEEcCCCcccCCCchh
Q 039778 419 LDAIIMPDNHLEGPIPSE 436 (459)
Q Consensus 419 L~~L~l~~~~~~~~~~~~ 436 (459)
|++|+|++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444445555444 44433
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.26 E-value=0.00048 Score=64.47 Aligned_cols=183 Identities=23% Similarity=0.223 Sum_probs=108.6
Q ss_pred ccEEEeccCccccccchhhhh---cCCCccEEEeecCcCCCCCC----CcccCC-CCCcEEEccCCccccccchhH---H
Q 039778 273 IIALDISYNKLQGHIPVEIGK---VLPNLGFLSITFNAFNGSIP----SSFGDM-NSLIYLDLSNNQLTGEIPEHL---A 341 (459)
Q Consensus 273 L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~~~~~~---~ 341 (459)
+..+.+.+|.+.+.....+.. ..+.|+.+++++|.+.+... ..+... ..++.|++..|.+++.....+ .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 666777777766554444433 35677788888887774322 222332 456667777777664433222 2
Q ss_pred hcccccceeeccccccccc----cccccc----cccCCceEEccCCcccCCC----cccccccCC-CcEEEcccccccCC
Q 039778 342 MGCFNLEYLLLSNNSLQGQ----LFSKKN----NLTKLKRLNLDGNHFIGDI----PESLSNCSS-LQGLYISDNDITGS 408 (459)
Q Consensus 342 ~~~~~L~~L~l~~~~i~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~~~ 408 (459)
.....++.++++.|.+... ...++. ...++++|.+..|.++... ...+...++ +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 2366777888888876421 222233 3567888888888765321 122344444 56678887776643
Q ss_pred ----CcccccCc-ccccEEEcCCCcccCCCc----hhhcCCCcccEEeccCCcccc
Q 039778 409 ----IPTWIGNI-SFLDAIIMPDNHLEGPIP----SEFCQLDYLEILDLSKNNIAG 455 (459)
Q Consensus 409 ----~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~ 455 (459)
..+.+..+ ..+++++++.|++..... ..+..++.++.+.+.+|+++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22344444 567888888888875433 344566788888888887753
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.11 E-value=0.023 Score=28.28 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=15.0
Q ss_pred CCCCcEEEccCCcccccchhhhc
Q 039778 1 LSNLKFLDLSHNSFNNSVLSSLA 23 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~~~ 23 (459)
|++|++|++++|.+++.....++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 57888888888888876666553
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.84 E-value=0.0014 Score=61.42 Aligned_cols=159 Identities=28% Similarity=0.293 Sum_probs=112.5
Q ss_pred ccEEEeecCcCCCC----CCCcccCCCCCcEEEccCCccccccchhHHhcc----cccceeeccccccccc----ccccc
Q 039778 298 LGFLSITFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC----FNLEYLLLSNNSLQGQ----LFSKK 365 (459)
Q Consensus 298 L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~i~~~----~~~~~ 365 (459)
+..+.+.+|.+.+. ....+...++|+.|++++|.+.++....+.... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67788888888754 344567788999999999998855554444332 4577899999988753 44566
Q ss_pred ccccCCceEEccCCcccCC----Cccccc----ccCCCcEEEcccccccCC----CcccccCccc-ccEEEcCCCcccCC
Q 039778 366 NNLTKLKRLNLDGNHFIGD----IPESLS----NCSSLQGLYISDNDITGS----IPTWIGNISF-LDAIIMPDNHLEGP 432 (459)
Q Consensus 366 ~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~~ 432 (459)
...+.++.+++..|.+... .+..+. ...++++|.+++|.++.. ....+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 6688999999999987422 223333 367899999999987743 2234555566 77799999988744
Q ss_pred C----chhhcCC-CcccEEeccCCccccc
Q 039778 433 I----PSEFCQL-DYLEILDLSKNNIAGS 456 (459)
Q Consensus 433 ~----~~~~~~~-~~L~~L~l~~~~~~~~ 456 (459)
. ...+... ..++.++++.|+|+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEK 277 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence 2 2334444 6789999999999854
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.48 E-value=0.13 Score=25.93 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=12.7
Q ss_pred CcccEEeccCCcccccCCC
Q 039778 441 DYLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 441 ~~L~~L~l~~~~~~~~~p~ 459 (459)
++|+.|++++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45777777777777 6764
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.30 E-value=0.17 Score=25.61 Aligned_cols=17 Identities=53% Similarity=0.735 Sum_probs=9.4
Q ss_pred CcccEEeccCCcccccCC
Q 039778 441 DYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 441 ~~L~~L~l~~~~~~~~~p 458 (459)
++|+.|+|++|++. ++|
T Consensus 2 ~~L~~L~L~~N~l~-~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCEEECCCCcCC-cCC
Confidence 44556666666555 444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.30 E-value=0.17 Score=25.61 Aligned_cols=17 Identities=53% Similarity=0.735 Sum_probs=9.4
Q ss_pred CcccEEeccCCcccccCC
Q 039778 441 DYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 441 ~~L~~L~l~~~~~~~~~p 458 (459)
++|+.|+|++|++. ++|
T Consensus 2 ~~L~~L~L~~N~l~-~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCEEECCCCcCC-cCC
Confidence 44556666666555 444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.87 E-value=0.0074 Score=49.26 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=59.2
Q ss_pred cccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCccc
Q 039778 365 KNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 444 (459)
Q Consensus 365 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 444 (459)
+......+.|+++.|.+.. ....|+.+..+..++++.|.+. ..|..+.....+..+++..|..+ ..|..+...+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 3444566777777776552 3344556666777777777776 67777777777777777777766 5677777777777
Q ss_pred EEeccCCccc
Q 039778 445 ILDLSKNNIA 454 (459)
Q Consensus 445 ~L~l~~~~~~ 454 (459)
.+++.+++++
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777777665
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.24 E-value=0.4 Score=24.21 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=16.4
Q ss_pred CCCCcEEEccCCcccccchhhhc
Q 039778 1 LSNLKFLDLSHNSFNNSVLSSLA 23 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~~~ 23 (459)
+++|+.|++++|.++....+.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46778888888888766666553
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.24 E-value=0.4 Score=24.21 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=16.4
Q ss_pred CCCCcEEEccCCcccccchhhhc
Q 039778 1 LSNLKFLDLSHNSFNNSVLSSLA 23 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~~~ 23 (459)
+++|+.|++++|.++....+.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46778888888888766666553
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.38 E-value=0.43 Score=24.13 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=13.4
Q ss_pred CCCCcEEEccCCc-ccccchhhh
Q 039778 1 LSNLKFLDLSHNS-FNNSVLSSL 22 (459)
Q Consensus 1 ~~~L~~L~l~~~~-~~~~~~~~~ 22 (459)
|++|+.|++++|. +++.....+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 5677777777773 655444443
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.46 E-value=0.64 Score=24.05 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=15.0
Q ss_pred CCCcEEEccCCcccccchhhh
Q 039778 2 SNLKFLDLSHNSFNNSVLSSL 22 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~ 22 (459)
++|++|+|++|.+.+.....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 578888888888776555444
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.09 E-value=0.11 Score=42.70 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=27.2
Q ss_pred ccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccc
Q 039778 344 CFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDI 405 (459)
Q Consensus 344 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 405 (459)
++.++.|+++.+++. ..+..+.....++.+.+.+|... ..|..+...++++.++..++++
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 344455555544443 33344444444444444444433 3344444444555555444443
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.68 E-value=3 Score=21.15 Aligned_cols=14 Identities=50% Similarity=0.676 Sum_probs=8.7
Q ss_pred CCCcEEEccCCccc
Q 039778 2 SNLKFLDLSHNSFN 15 (459)
Q Consensus 2 ~~L~~L~l~~~~~~ 15 (459)
++|++|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 55666666666654
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.74 E-value=2.8 Score=39.52 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=21.0
Q ss_pred CCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCC
Q 039778 120 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSN 158 (459)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 158 (459)
+.+.+..+.+++|++.+.+.+.......|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345555555666655554444444445556666666655
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.71 E-value=3.1 Score=39.24 Aligned_cols=71 Identities=28% Similarity=0.249 Sum_probs=39.2
Q ss_pred hhHHhcccccceeeccccccccc--cccccccccCCceEEccCCcccCCCccccc--ccCCCcEEEcccccccCC
Q 039778 338 EHLAMGCFNLEYLLLSNNSLQGQ--LFSKKNNLTKLKRLNLDGNHFIGDIPESLS--NCSSLQGLYISDNDITGS 408 (459)
Q Consensus 338 ~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~ 408 (459)
.......|.+..+++++|++... ....-...|+|+.|+|++|........++. ....|++|.+.||++...
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 33444567777777777766421 111223457777888877732211222222 234577788888877754
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=52.54 E-value=55 Score=30.78 Aligned_cols=55 Identities=24% Similarity=0.176 Sum_probs=24.0
Q ss_pred CcEEEccCCcccccchhhhcC---CccccEEEecccccc-----CCcccccCccCceEEcCCC
Q 039778 4 LKFLDLSHNSFNNSVLSSLAG---LSSLKNLSLAYNRLE-----GSINIEGMNMLESLDLSGN 58 (459)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~-----~~~~~~~l~~L~~L~l~~~ 58 (459)
+++++++.+...+..+..+.. -.-++.+++++..+. +......-.+++..+++.+
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~n 278 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRN 278 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccC
Confidence 345555555554444444322 123555555544321 1222333345555555543
No 92
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=28.95 E-value=21 Score=18.05 Aligned_cols=8 Identities=25% Similarity=0.484 Sum_probs=3.1
Q ss_pred cEEecCCC
Q 039778 125 RFLDLSGL 132 (459)
Q Consensus 125 ~~L~l~~~ 132 (459)
|.|.+...
T Consensus 3 KtL~L~~v 10 (26)
T PF07723_consen 3 KTLHLDSV 10 (26)
T ss_pred eEEEeeEE
Confidence 33444333
No 93
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=25.55 E-value=64 Score=26.74 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=14.9
Q ss_pred ccccceeeccccccccccccccccccCCceEEccCCccc
Q 039778 344 CFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI 382 (459)
Q Consensus 344 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~ 382 (459)
|.+++--.+..|++.+ |.++. .+|+-.++.|+.+.
T Consensus 195 caN~eGA~L~gcNfed--ps~~k--aNLeganLkG~~~e 229 (302)
T KOG1665|consen 195 CANAEGASLKGCNFED--PSGLK--ANLEGANLKGADME 229 (302)
T ss_pred ecccccccccCcCCCC--ccchh--cccccccccccccc
Confidence 4444444444454432 22221 34555555555443
Done!