Query 039778
Match_columns 459
No_of_seqs 209 out of 2564
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 22:50:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6E-50 2E-54 399.8 33.0 447 1-459 199-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.4E-50 2.5E-54 399.1 33.4 446 1-459 99-556 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.3E-47 4.5E-52 375.1 33.6 444 2-454 33-536 (606)
4 2z63_A TOLL-like receptor 4, v 100.0 8E-46 2.7E-50 360.3 30.8 442 2-459 28-536 (570)
5 3vq2_A TLR4, TOLL-like recepto 100.0 7.4E-46 2.5E-50 362.8 30.2 440 2-457 32-561 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 8.3E-44 2.8E-48 352.8 37.2 449 2-458 25-576 (680)
7 3t6q_A CD180 antigen; protein- 100.0 9.8E-44 3.4E-48 347.7 35.4 441 5-458 15-517 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-43 5.5E-48 350.8 36.3 446 1-454 48-597 (680)
9 3vq2_A TLR4, TOLL-like recepto 100.0 4.8E-43 1.7E-47 342.9 32.5 434 5-458 14-537 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-42 6.4E-47 349.2 31.3 439 2-458 24-543 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-42 4E-47 336.2 26.4 447 2-458 26-514 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 2.4E-41 8.2E-46 328.8 31.8 435 5-458 10-511 (570)
13 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-41 1.6E-45 339.1 31.8 436 1-457 47-563 (844)
14 4eco_A Uncharacterized protein 100.0 3.3E-42 1.1E-46 336.2 20.6 434 3-454 82-600 (636)
15 2z7x_B TOLL-like receptor 1, v 100.0 6.1E-41 2.1E-45 321.8 24.8 431 5-457 3-484 (520)
16 4ecn_A Leucine-rich repeat pro 100.0 1.6E-40 5.5E-45 329.2 25.8 414 3-433 324-843 (876)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1E-38 3.5E-43 308.7 31.3 446 1-458 4-490 (549)
18 4eco_A Uncharacterized protein 100.0 3.5E-39 1.2E-43 314.9 25.7 381 41-454 199-632 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-38 1.1E-42 311.2 31.5 445 2-456 52-582 (635)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-38 6.1E-43 306.9 26.4 436 2-457 31-513 (562)
21 2z7x_B TOLL-like receptor 1, v 100.0 7.6E-39 2.6E-43 307.2 22.4 413 2-432 21-483 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 4.4E-38 1.5E-42 311.8 27.4 413 26-454 323-840 (876)
23 3v47_A TOLL-like receptor 5B a 100.0 1.6E-37 5.5E-42 293.2 29.3 365 48-458 30-412 (455)
24 3v47_A TOLL-like receptor 5B a 100.0 7.2E-37 2.5E-41 288.7 29.2 136 271-408 275-410 (455)
25 1o6v_A Internalin A; bacterial 100.0 4.6E-35 1.6E-39 276.3 31.7 345 25-431 45-389 (466)
26 1o6v_A Internalin A; bacterial 100.0 6.3E-35 2.2E-39 275.3 31.6 344 2-407 46-389 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-36 1.4E-40 290.4 21.9 414 2-433 52-513 (562)
28 4g8a_A TOLL-like receptor 4; l 100.0 9.9E-35 3.4E-39 286.3 31.1 425 1-431 75-581 (635)
29 3bz5_A Internalin-J, INLJ; leu 100.0 9.7E-35 3.3E-39 271.5 25.6 350 19-459 35-392 (457)
30 1jl5_A Outer protein YOPM; leu 100.0 4.5E-34 1.5E-38 266.8 26.9 372 2-458 11-415 (454)
31 2id5_A Lingo-1, leucine rich r 100.0 2.7E-33 9.1E-38 265.6 25.3 320 29-406 14-333 (477)
32 2id5_A Lingo-1, leucine rich r 100.0 4.8E-33 1.7E-37 263.8 26.1 320 52-431 15-334 (477)
33 4fmz_A Internalin; leucine ric 100.0 2.6E-32 8.8E-37 248.0 29.0 309 42-454 38-346 (347)
34 4fmz_A Internalin; leucine ric 100.0 2.7E-32 9.3E-37 247.9 28.4 306 22-405 40-345 (347)
35 1jl5_A Outer protein YOPM; leu 100.0 2.2E-32 7.5E-37 255.4 25.5 371 1-458 33-433 (454)
36 3o6n_A APL1; leucine-rich repe 100.0 4.5E-32 1.5E-36 250.2 24.9 309 47-431 44-353 (390)
37 3bz5_A Internalin-J, INLJ; leu 100.0 8.8E-32 3E-36 251.5 26.7 344 2-435 42-392 (457)
38 3oja_B Anopheles plasmodium-re 100.0 5.3E-31 1.8E-35 255.9 25.2 310 47-431 50-359 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 7.5E-31 2.6E-35 242.0 24.5 309 25-408 44-354 (390)
40 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-33 4.5E-38 266.9 -1.3 360 2-407 3-412 (461)
41 3oja_B Anopheles plasmodium-re 100.0 1.4E-29 4.6E-34 246.0 25.2 307 25-382 50-358 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 3.8E-33 1.3E-37 263.8 -2.2 386 49-455 4-441 (461)
43 3ogk_B Coronatine-insensitive 100.0 5.3E-32 1.8E-36 264.2 5.8 429 17-450 64-547 (592)
44 3ogk_B Coronatine-insensitive 100.0 2.4E-31 8.4E-36 259.5 7.7 422 1-427 72-548 (592)
45 1xku_A Decorin; proteoglycan, 100.0 1.3E-27 4.5E-32 215.1 26.0 153 295-452 170-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 6.1E-28 2.1E-32 217.4 22.4 131 320-452 193-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 1.3E-27 4.5E-32 215.1 24.4 270 97-428 52-330 (330)
48 2p1m_B Transport inhibitor res 100.0 4.3E-31 1.5E-35 257.9 1.1 136 46-183 103-244 (594)
49 2ft3_A Biglycan; proteoglycan, 100.0 2E-27 6.9E-32 214.0 23.5 290 27-404 34-331 (332)
50 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-28 5.7E-33 218.5 16.1 254 175-458 51-308 (313)
51 2p1m_B Transport inhibitor res 100.0 3.1E-30 1.1E-34 251.9 1.1 419 1-426 65-540 (594)
52 1ogq_A PGIP-2, polygalacturona 100.0 4E-27 1.4E-31 209.6 18.5 233 198-459 50-286 (313)
53 2z80_A TOLL-like receptor 2, v 99.9 4.6E-26 1.6E-30 207.0 19.0 279 96-433 30-317 (353)
54 2z66_A Variable lymphocyte rec 99.9 9.5E-26 3.3E-30 200.8 18.0 189 270-458 100-291 (306)
55 3zyi_A Leucine-rich repeat-con 99.9 1.9E-25 6.5E-30 209.8 20.8 133 295-430 170-303 (452)
56 3zyj_A Leucine-rich repeat-con 99.9 2.2E-25 7.4E-30 208.6 20.6 136 292-430 156-292 (440)
57 2z66_A Variable lymphocyte rec 99.9 7E-26 2.4E-30 201.7 16.0 284 100-440 10-297 (306)
58 4fcg_A Uncharacterized protein 99.9 3.9E-25 1.3E-29 197.9 19.5 133 318-453 181-313 (328)
59 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.7E-31 207.4 8.5 241 171-451 31-272 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-25 6.5E-30 196.6 15.9 156 295-452 128-285 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 9.2E-25 3.1E-29 204.4 21.4 235 2-244 64-300 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 1.2E-24 4E-29 204.4 21.6 235 2-244 75-311 (452)
63 2z80_A TOLL-like receptor 2, v 99.9 2.3E-24 7.8E-29 195.8 20.8 109 272-382 199-314 (353)
64 1ozn_A Reticulon 4 receptor; N 99.9 3.4E-25 1.2E-29 194.9 14.7 163 294-458 103-265 (285)
65 4fcg_A Uncharacterized protein 99.9 1.5E-24 5E-29 194.1 17.8 224 2-235 81-313 (328)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-23 6E-28 201.0 24.4 266 98-439 41-306 (622)
67 1wwl_A Monocyte differentiatio 99.9 3.5E-25 1.2E-29 197.2 10.1 179 271-455 121-310 (312)
68 3oja_A Leucine-rich immune mol 99.9 8.8E-25 3E-29 206.1 12.9 237 173-449 33-270 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-22 4E-27 195.3 23.4 151 50-234 42-192 (622)
70 3o53_A Protein LRIM1, AGAP0063 99.9 3.4E-24 1.2E-28 191.3 11.0 238 176-454 12-250 (317)
71 2o6q_A Variable lymphocyte rec 99.9 2.3E-22 7.9E-27 175.1 19.0 185 270-456 36-220 (270)
72 2z62_A TOLL-like receptor 4, v 99.9 1.9E-22 6.7E-27 176.5 16.4 158 271-431 76-238 (276)
73 1wwl_A Monocyte differentiatio 99.9 3.4E-24 1.2E-28 190.8 5.1 182 45-236 40-241 (312)
74 3rfs_A Internalin B, repeat mo 99.9 5.6E-23 1.9E-27 179.1 10.3 209 196-442 39-247 (272)
75 2z62_A TOLL-like receptor 4, v 99.9 5.6E-22 1.9E-26 173.5 16.5 223 7-239 12-240 (276)
76 3oja_A Leucine-rich immune mol 99.9 1.1E-22 3.6E-27 191.9 12.6 218 196-454 32-250 (487)
77 3rfs_A Internalin B, repeat mo 99.9 2.3E-21 7.9E-26 168.9 17.5 183 270-458 40-222 (272)
78 1p9a_G Platelet glycoprotein I 99.9 2.4E-21 8.1E-26 170.0 17.5 179 271-455 31-209 (290)
79 2o6q_A Variable lymphocyte rec 99.9 8.9E-21 3.1E-25 165.1 19.3 134 271-406 85-218 (270)
80 3m19_A Variable lymphocyte rec 99.9 4.5E-21 1.5E-25 165.0 17.1 181 271-456 14-194 (251)
81 2ast_B S-phase kinase-associat 99.9 2E-22 6.8E-27 182.0 8.6 257 149-438 48-314 (336)
82 4glp_A Monocyte differentiatio 99.9 2E-21 6.8E-26 172.9 13.2 157 294-455 143-308 (310)
83 2ca6_A RAN GTPase-activating p 99.9 7.9E-23 2.7E-27 188.0 2.9 138 296-433 159-319 (386)
84 3goz_A Leucine-rich repeat-con 99.9 3.7E-22 1.3E-26 181.6 6.4 257 153-432 3-299 (362)
85 2ast_B S-phase kinase-associat 99.8 1.1E-21 3.7E-26 177.1 8.6 258 98-415 48-315 (336)
86 1p9a_G Platelet glycoprotein I 99.8 1E-19 3.4E-24 159.7 20.6 207 22-241 6-213 (290)
87 1h6u_A Internalin H; cell adhe 99.8 4.2E-20 1.4E-24 163.8 17.4 195 22-237 37-231 (308)
88 1h6u_A Internalin H; cell adhe 99.8 9.5E-20 3.2E-24 161.5 19.2 190 2-211 41-230 (308)
89 2ca6_A RAN GTPase-activating p 99.8 1.5E-21 5E-26 179.6 4.3 237 1-238 31-318 (386)
90 2xwt_C Thyrotropin receptor; s 99.8 4.5E-20 1.5E-24 157.7 12.7 150 295-451 79-236 (239)
91 3goz_A Leucine-rich repeat-con 99.8 4.4E-21 1.5E-25 174.5 6.0 262 127-411 3-302 (362)
92 4glp_A Monocyte differentiatio 99.8 4.4E-20 1.5E-24 164.2 11.4 227 3-236 65-307 (310)
93 2xwt_C Thyrotropin receptor; s 99.8 6E-20 2.1E-24 156.9 11.7 185 269-459 29-222 (239)
94 2o6s_A Variable lymphocyte rec 99.8 7.5E-20 2.6E-24 152.7 11.8 155 296-458 28-182 (208)
95 3m19_A Variable lymphocyte rec 99.8 4.2E-19 1.4E-23 152.7 16.5 161 270-432 34-194 (251)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-18 8.2E-23 144.4 14.1 152 274-430 14-166 (220)
97 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 145.8 11.4 166 268-442 25-190 (208)
98 1h6t_A Internalin B; cell adhe 99.8 4.2E-18 1.4E-22 149.5 15.5 172 268-455 43-214 (291)
99 2v9t_B SLIT homolog 2 protein 99.8 5.1E-18 1.7E-22 142.4 13.9 152 274-430 14-165 (220)
100 4ezg_A Putative uncharacterize 99.8 3.1E-18 1.1E-22 141.3 12.0 152 295-455 43-195 (197)
101 4ay9_X Follicle-stimulating ho 99.8 1.7E-17 5.7E-22 150.0 17.2 223 174-427 30-256 (350)
102 2xot_A Amphoterin-induced prot 99.8 3.7E-18 1.3E-22 154.9 12.2 178 273-455 20-203 (361)
103 4ezg_A Putative uncharacterize 99.7 9.2E-18 3.2E-22 138.5 12.6 153 23-187 41-194 (197)
104 3cvr_A Invasion plasmid antige 99.7 1.4E-17 4.9E-22 158.1 15.5 161 271-458 80-247 (571)
105 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 9E-22 144.4 15.7 189 27-236 25-213 (291)
106 3e6j_A Variable lymphocyte rec 99.7 2.4E-17 8.4E-22 139.2 14.4 157 270-432 18-174 (229)
107 1m9s_A Internalin B; cell inva 99.7 3.1E-17 1.1E-21 157.6 14.5 169 25-211 42-210 (605)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 3.8E-17 1.3E-21 137.1 13.2 155 299-456 14-168 (220)
109 3e6j_A Variable lymphocyte rec 99.7 7.8E-17 2.7E-21 136.1 14.7 133 271-406 40-172 (229)
110 2v9t_B SLIT homolog 2 protein 99.7 5.7E-17 1.9E-21 136.0 13.2 134 271-406 32-165 (220)
111 1m9s_A Internalin B; cell inva 99.7 6.6E-17 2.2E-21 155.4 15.1 171 1-189 42-212 (605)
112 4ay9_X Follicle-stimulating ho 99.7 2.7E-16 9.4E-21 142.1 17.4 104 5-112 12-119 (350)
113 3cvr_A Invasion plasmid antige 99.7 7.9E-17 2.7E-21 153.0 13.6 124 297-438 121-251 (571)
114 4fs7_A Uncharacterized protein 99.7 8.6E-16 2.9E-20 141.2 20.2 330 41-422 64-393 (394)
115 3sb4_A Hypothetical leucine ri 99.7 3E-17 1E-21 147.1 9.8 101 295-398 225-326 (329)
116 1xeu_A Internalin C; cellular 99.7 3.9E-17 1.3E-21 140.9 9.1 168 271-455 19-186 (263)
117 1xeu_A Internalin C; cellular 99.7 6.1E-17 2.1E-21 139.8 9.3 168 25-211 18-185 (263)
118 4fs7_A Uncharacterized protein 99.7 3.4E-15 1.1E-19 137.3 21.4 336 59-446 58-393 (394)
119 2xot_A Amphoterin-induced prot 99.7 1.8E-16 6E-21 143.9 11.6 161 269-431 37-203 (361)
120 2ell_A Acidic leucine-rich nuc 99.7 2.7E-16 9.4E-21 126.2 11.3 136 320-459 24-164 (168)
121 3sb4_A Hypothetical leucine ri 99.7 3.6E-17 1.2E-21 146.6 6.2 290 120-448 23-328 (329)
122 1w8a_A SLIT protein; signaling 99.7 2.4E-16 8.1E-21 129.2 10.1 131 299-432 11-141 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7E-20 121.0 10.7 136 25-163 23-162 (168)
124 2o6r_A Variable lymphocyte rec 99.6 2.8E-15 9.7E-20 121.3 11.0 129 299-431 10-138 (177)
125 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4E-20 119.7 8.0 128 320-450 17-149 (149)
126 2wfh_A SLIT homolog 2 protein 99.6 5.1E-15 1.7E-19 121.1 11.9 127 299-430 13-139 (193)
127 1w8a_A SLIT protein; signaling 99.6 2.1E-15 7.1E-20 123.6 8.3 174 273-456 10-185 (192)
128 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.2E-20 118.0 8.3 127 26-155 17-147 (149)
129 4fdw_A Leucine rich hypothetic 99.6 8.8E-14 3E-18 127.0 19.8 270 70-404 111-381 (401)
130 4fdw_A Leucine rich hypothetic 99.6 1.1E-13 3.7E-18 126.5 20.4 269 94-430 110-383 (401)
131 1dce_A Protein (RAB geranylger 99.6 4.2E-17 1.4E-21 155.8 -2.6 183 268-458 346-550 (567)
132 4b8c_D Glucose-repressible alc 99.6 7.6E-16 2.6E-20 151.8 5.3 181 271-459 173-359 (727)
133 1a9n_A U2A', U2A'; complex (nu 99.6 4.5E-15 1.5E-19 119.9 8.3 133 316-454 15-153 (176)
134 4gt6_A Cell surface protein; l 99.5 9.5E-13 3.3E-17 120.9 22.0 155 43-208 58-215 (394)
135 1dce_A Protein (RAB geranylger 99.5 3.1E-16 1E-20 149.8 -3.1 196 23-229 346-566 (567)
136 4gt6_A Cell surface protein; l 99.5 3.2E-12 1.1E-16 117.4 22.9 208 13-233 50-275 (394)
137 2wfh_A SLIT homolog 2 protein 99.5 1.6E-13 5.6E-18 112.2 12.5 128 273-406 12-139 (193)
138 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 110.9 11.9 133 272-409 8-140 (177)
139 1a9n_A U2A', U2A'; complex (nu 99.5 7.4E-14 2.5E-18 112.7 9.0 134 22-161 15-153 (176)
140 4b8c_D Glucose-repressible alc 99.5 3.9E-14 1.3E-18 139.7 7.5 157 295-458 172-333 (727)
141 1ds9_A Outer arm dynein; leuci 99.5 1.5E-15 5.3E-20 125.2 -3.3 132 315-454 43-185 (198)
142 3un9_A NLR family member X1; l 99.5 3.7E-15 1.3E-19 134.8 -1.2 185 270-454 71-283 (372)
143 3g39_A Variable lymphocyte rec 99.4 1.9E-12 6.3E-17 103.5 10.1 107 321-431 10-116 (170)
144 1ds9_A Outer arm dynein; leuci 99.4 2.7E-14 9.3E-19 117.7 -1.3 150 272-430 19-185 (198)
145 3un9_A NLR family member X1; l 99.4 4E-14 1.4E-18 128.0 -1.7 161 295-455 71-253 (372)
146 3g39_A Variable lymphocyte rec 99.3 4E-12 1.4E-16 101.6 9.3 106 298-407 11-116 (170)
147 2r9u_A Variable lymphocyte rec 99.3 7E-12 2.4E-16 100.5 10.6 105 322-430 14-118 (174)
148 2r9u_A Variable lymphocyte rec 99.3 6.9E-12 2.4E-16 100.5 9.8 104 299-406 15-118 (174)
149 4h09_A Hypothetical leucine ri 99.3 5.1E-10 1.7E-14 102.3 22.8 291 21-354 41-342 (379)
150 4h09_A Hypothetical leucine ri 99.3 4.2E-10 1.4E-14 102.8 22.2 177 41-233 39-227 (379)
151 2ifg_A High affinity nerve gro 99.0 9.2E-10 3.1E-14 99.3 9.7 105 323-431 11-117 (347)
152 2ra8_A Uncharacterized protein 99.0 4.3E-10 1.5E-14 100.7 7.4 179 269-452 137-341 (362)
153 2ra8_A Uncharacterized protein 99.0 3E-10 1E-14 101.7 5.9 181 271-455 107-321 (362)
154 2ifg_A High affinity nerve gro 99.0 4.3E-10 1.5E-14 101.4 6.8 103 300-406 12-116 (347)
155 3e4g_A ATP synthase subunit S, 98.8 1.9E-09 6.4E-14 84.5 3.6 82 27-108 62-150 (176)
156 1io0_A Tropomodulin; LRR prote 98.7 2.4E-09 8.3E-14 86.5 2.2 114 316-429 32-163 (185)
157 3e4g_A ATP synthase subunit S, 98.7 7.6E-09 2.6E-13 81.1 3.9 86 296-381 61-151 (176)
158 1io0_A Tropomodulin; LRR prote 98.7 9.1E-09 3.1E-13 83.1 3.1 112 295-406 35-164 (185)
159 3rw6_A Nuclear RNA export fact 98.3 2.8E-07 9.6E-12 78.1 3.3 79 342-422 167-256 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.2E-06 4E-11 74.3 5.8 80 23-104 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 8.2E-06 2.8E-10 65.2 2.3 85 318-402 39-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 1.8E-05 6E-10 63.3 3.4 110 295-404 40-168 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0049 1.7E-07 45.8 6.1 57 372-430 11-68 (130)
164 3rfe_A Platelet glycoprotein I 95.8 0.019 6.6E-07 42.5 6.0 56 349-406 12-68 (130)
165 2lz0_A Uncharacterized protein 89.8 0.69 2.4E-05 32.1 5.4 48 11-58 5-53 (100)
166 2lz0_A Uncharacterized protein 86.7 0.62 2.1E-05 32.4 3.5 45 60-106 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-50 Score=399.80 Aligned_cols=447 Identities=30% Similarity=0.427 Sum_probs=354.2
Q ss_pred CCCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778 1 LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN 78 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 78 (459)
+++|++|++++|.+++..+. +..+++|++|++++|.+.+ +..+..+++|++|++++|.+....+.. .+++|++|+
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence 57889999999988876665 8889999999999998775 456888999999999999886554443 788899999
Q ss_pred ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCccccc-ccCCCcccEEEccC
Q 039778 79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS-IGSFPSLKTLYLKS 157 (459)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~ 157 (459)
+++|.+.+.++......+++|++|++++|.+.... +..+..+++|++|++++|.+.+. ++.. +..+++|++|++++
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~--ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGE--LPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEE--CCHHHHTTCTTCCEEECCS
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc-chHHhcCCCccEEECCCCcccCc--CCHHHHhcCCCCCEEeCcC
Confidence 99888876555533333588999999988887543 67788889999999988887632 4544 77888899999988
Q ss_pred CcccccccccccccCcc-cccEEEccccccccccchhccC--CCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecce
Q 039778 158 NNFAKTVTTTQGLCELV-HLQDLYIDRNDFIGSLPWCLAN--LTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH 234 (459)
Q Consensus 158 ~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (459)
|.+.+..+. .+..++ +|++|++++|.+.+..+..+.. +++|++|++++|.+.+.+ +..+..+++|+.|++++|.
T Consensus 353 n~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 353 NEFSGELPE--SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp SEEEECCCT--THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC-CGGGGGCTTCCEEECCSSE
T ss_pred CccCccccH--HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc-CHHHhcCCCCCEEECcCCc
Confidence 887643332 355565 7888888888887766666655 677888888888877544 5667788888888888887
Q ss_pred eeeecccccccccCCceeeecC-ccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCC
Q 039778 235 FQIPISLEPFFNYSKLKIFHAN-NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP 313 (459)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 313 (459)
+.+. ....+..+++++.+... +...+.....+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.+..+
T Consensus 430 l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 430 LSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp EESC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCC
T ss_pred ccCc-ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCC
Confidence 7632 23446666777777643 3444455556667788888888888888777776654 8888888888888887788
Q ss_pred CcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccccccc------------------------------
Q 039778 314 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFS------------------------------ 363 (459)
Q Consensus 314 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~------------------------------ 363 (459)
..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|++.+.+|.
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 8888888888888888888877776554 488888888888877654433
Q ss_pred ----------------------------------------ccccccCCceEEccCCcccCCCcccccccCCCcEEEcccc
Q 039778 364 ----------------------------------------KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDN 403 (459)
Q Consensus 364 ----------------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 403 (459)
.+..+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 2344678999999999999999999999999999999999
Q ss_pred cccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778 404 DITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 404 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 459 (459)
.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|+++|.+|+
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999995
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-50 Score=399.12 Aligned_cols=446 Identities=30% Similarity=0.442 Sum_probs=382.8
Q ss_pred CCCCcEEEccCCcccccchh--hhcCCccccEEEeccccccCCc--c-cccCccCceEEcCCCCCCcccccc---cccCC
Q 039778 1 LSNLKFLDLSHNSFNNSVLS--SLAGLSSLKNLSLAYNRLEGSI--N-IEGMNMLESLDLSGNKFNSSILSS---LTALS 72 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~~~---~~~l~ 72 (459)
+++|++|++++|.+++..+. .+..+++|++|++++|.+.+.. . +.++++|++|++++|.++...+.. +.+++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 57899999999999887777 8889999999999999876532 2 378899999999999988766665 78899
Q ss_pred CCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccE
Q 039778 73 SLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT 152 (459)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 152 (459)
+|++|++++|.+.+.. .+..+++|++|++++|.+.... + .+..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 179 ~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~-~-~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 179 ELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGI-P-FLGDCSALQHLDISGNKLSGD--FSRAISTCTELKL 251 (768)
T ss_dssp TCCEEECCSSEEESCC---BCTTCTTCCEEECCSSCCCSCC-C-BCTTCCSCCEEECCSSCCCSC--HHHHTTTCSSCCE
T ss_pred CCCEEECCCCcccccC---CcccCCcCCEEECcCCcCCCCC-c-ccccCCCCCEEECcCCcCCCc--ccHHHhcCCCCCE
Confidence 9999999999877433 3478999999999999988753 3 389999999999999998765 7888999999999
Q ss_pred EEccCCcccccccccccccCcccccEEEccccccccccchhccC-CCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEee
Q 039778 153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLAN-LTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLS 231 (459)
Q Consensus 153 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 231 (459)
|++++|.+.+..+. ..+++|++|++++|.+.+..|..+.. +++|++|++++|.+.+.+ +..+..+++|+.|+++
T Consensus 252 L~Ls~n~l~~~~~~----~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 252 LNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALS 326 (768)
T ss_dssp EECCSSCCEESCCC----CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECC
T ss_pred EECCCCcccCccCc----cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc-chHHhcCCCccEEECC
Confidence 99999988654443 27889999999999998878877766 499999999999987544 5678899999999999
Q ss_pred cceeeeecccccccccCCceeeecCc-cccCCcccCcCCCC-CccEEEeccCccccccchhhhh-cCCCccEEEeecCcC
Q 039778 232 NNHFQIPISLEPFFNYSKLKIFHANN-SLSGPFRLPTRSRK-NIIALDISYNKLQGHIPVEIGK-VLPNLGFLSITFNAF 308 (459)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~ 308 (459)
+|.+.+......+..+++++.+.... ...+.....+..++ +|++|++++|.+.+.++..+.. .+++|+.|++++|.+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 99988766666677888888887543 33334444555555 8999999999998877776653 267899999999999
Q ss_pred CCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCccc
Q 039778 309 NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPES 388 (459)
Q Consensus 309 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 388 (459)
.+..+..+..+++|+.|++++|.+++.+|..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 485 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH
Confidence 98888899999999999999999987777655 45999999999999999889999999999999999999999999999
Q ss_pred ccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778 389 LSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 389 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 459 (459)
+..+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+++|.+|.
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-47 Score=375.14 Aligned_cols=444 Identities=21% Similarity=0.266 Sum_probs=264.7
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
+++++|++++|.+++..+..|.++++|++|++++|.+.+ +..|.++++|++|++++|.+....+..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 468999999999998888999999999999999998765 456899999999999999998777888999999999999
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCccc--EEEccC
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLK--TLYLKS 157 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~--~L~l~~ 157 (459)
++|.+. ..+...+..+++|++|++++|.+.....+... .+++|++|++++|.+... .+..++.+++|+ +|++++
T Consensus 113 ~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 113 IQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYL--SKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp TTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEE--CHHHHHTTTTCCSEEEECTT
T ss_pred cccCcc-cCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCccccc--ChhhhhhhcccceeEEecCC
Confidence 999887 44445788899999999999998886544444 489999999999887653 455677778877 778887
Q ss_pred Cccccccccccc-----------------------------------------------ccCc--ccccEEEcccccccc
Q 039778 158 NNFAKTVTTTQG-----------------------------------------------LCEL--VHLQDLYIDRNDFIG 188 (459)
Q Consensus 158 ~~~~~~~~~~~~-----------------------------------------------~~~~--~~L~~L~l~~~~~~~ 188 (459)
|.+....+.... +..+ ..|+.|++++|.+.+
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 776543322100 0001 145666666666666
Q ss_pred ccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCcc-ccCCc-ccC
Q 039778 189 SLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNS-LSGPF-RLP 266 (459)
Q Consensus 189 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~-~~~ 266 (459)
..+..+..+++|++|+++++.+. .+ +..+..+++|+.|++++|.+... ....+..+++++.+..... ..... ...
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~l-p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-EL-PSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CC-CSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred cCHHHhccccCCCEEeccCCccC-CC-ChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhh
Confidence 55555666667777777766655 33 23456666666666666655421 1233444455555443221 11111 112
Q ss_pred cCCCCCccEEEeccCcccccc--chhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcc
Q 039778 267 TRSRKNIIALDISYNKLQGHI--PVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 344 (459)
Q Consensus 267 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 344 (459)
+..+++|++|++++|.+.+.. +..+ ..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+...+..+
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhccCcCCEEECCCCccccccCcchhc-ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 344555555555555554222 2222 2245555555555555444444444555555555555544433333333344
Q ss_pred cccceeeccccccccccccccccccCCceEEccCCcccCC---CcccccccCCCcEEEcccccccCCCcccccCcccccE
Q 039778 345 FNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD---IPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDA 421 (459)
Q Consensus 345 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 421 (459)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 4555555555544444444444444555555555444331 1123444444444444444444434444444444444
Q ss_pred EEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778 422 IIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 454 (459)
Q Consensus 422 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 454 (459)
|++++|++.+..|..+..++.| .|++++|+++
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 4444444444444444444444 4444444444
No 4
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8e-46 Score=360.32 Aligned_cols=442 Identities=22% Similarity=0.260 Sum_probs=351.6
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
+++++|++++|.+++..+..|.++++|++|++++|.+.+ ...|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 468999999999998888899999999999999998775 446889999999999999998777788999999999999
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcc----cEEEc
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL----KTLYL 155 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L----~~L~l 155 (459)
+++.+. .++...+..+++|++|++++|.+.....|..+..+++|++|+++++.+... .+..++.+++| +.+++
T Consensus 108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE--CGGGGHHHHTCTTCCCEEEC
T ss_pred cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee--cHHHccchhccchhhhhccc
Confidence 999876 444446889999999999999998766688899999999999999988653 44566666677 78888
Q ss_pred cCCcccccccccccccCcccccEEEcccc---------------------------------------------------
Q 039778 156 KSNNFAKTVTTTQGLCELVHLQDLYIDRN--------------------------------------------------- 184 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------------------------------------------- 184 (459)
++|.+....+. .+... +|++|+++++
T Consensus 185 ~~n~l~~~~~~--~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 185 SLNPMNFIQPG--AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp TTCCCCEECTT--TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred CCCCceecCHH--HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 88877654432 12222 4555555543
Q ss_pred -------ccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc
Q 039778 185 -------DFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN 257 (459)
Q Consensus 185 -------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (459)
.+.+..+..+..+++|++|+++++.+. .+ +..+..+ +|+.|++++|.+. .... ..+++++.+....
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l-~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~ 334 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RV-KDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SC-CBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEES
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccch-hh-hhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcC
Confidence 233344556666788889998888776 44 3445566 8889999888776 2222 3445555554322
Q ss_pred cccCCcccCcCCCCCccEEEeccCcccccc--chhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc
Q 039778 258 SLSGPFRLPTRSRKNIIALDISYNKLQGHI--PVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335 (459)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 335 (459)
..... ......+++|++|++++|.+.+.. +..+. .+++|+.|++++|.+...... +..+++|+.|++++|.+.+.
T Consensus 335 n~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 335 NKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBSCC-BCCCCBCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred Ccccc-ccccccCCCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 11111 112267899999999999887433 44444 489999999999988754443 88999999999999999855
Q ss_pred cchhHHhcccccceeeccccccccccccccccccCCceEEccCCccc-CCCcccccccCCCcEEEcccccccCCCccccc
Q 039778 336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI-GDIPESLSNCSSLQGLYISDNDITGSIPTWIG 414 (459)
Q Consensus 336 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 414 (459)
.+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|++|++++|++.+..|..+.
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 55556677999999999999999888889999999999999999987 46788899999999999999999977788999
Q ss_pred CcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778 415 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 415 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 459 (459)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|.
T Consensus 492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999999977777899999999999999999998873
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.4e-46 Score=362.78 Aligned_cols=440 Identities=20% Similarity=0.213 Sum_probs=278.7
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
+++++|++++|.+++..+..|.++++|++|++++|.+.+ +..|.++++|++|++++|.++...+..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 578999999999998888899999999999999998776 456889999999999999998777889999999999999
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCccc----EEEc
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLK----TLYL 155 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~----~L~l 155 (459)
++|.+. ..+...+..+++|++|++++|.+....+|..+..+++|++|++++|.+... .+..++.+++|+ ++++
T Consensus 112 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 112 VETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI--TVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp TTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE--CTTTTHHHHHCTTCCCEEEC
T ss_pred cCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec--Chhhhhhhhccccccceeec
Confidence 999887 455457889999999999999998766688899999999999999887653 233333333322 4555
Q ss_pred cCCcccccccccc-------------------------------------------------------------------
Q 039778 156 KSNNFAKTVTTTQ------------------------------------------------------------------- 168 (459)
Q Consensus 156 ~~~~~~~~~~~~~------------------------------------------------------------------- 168 (459)
++|.+........
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 5554433222100
Q ss_pred -----------cccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeee
Q 039778 169 -----------GLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI 237 (459)
Q Consensus 169 -----------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 237 (459)
.+..+++|+.|++.++.+.. .+ .+..+++|++|++++|.+ +.++ .+ .+++|+.|++++|....
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp--~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP--TL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC--CC-CCSSCCEEEEESCSSCE
T ss_pred cccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc--cC-CCCccceeeccCCcCcc
Confidence 02223344444444444322 22 344445555555555554 2332 12 55555555555553222
Q ss_pred ecccccccccCCceeeecCccc-cCC--cccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCC-
Q 039778 238 PISLEPFFNYSKLKIFHANNSL-SGP--FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP- 313 (459)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~-~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~- 313 (459)
.. .+..+++++.+...... ... ....+..+++|++|++++|.+. .++..+. .+++|+.|++++|.+....+
T Consensus 343 ~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 343 SF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp EC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTT
T ss_pred ch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccCh
Confidence 22 23344444444422211 111 1223344555666666666554 2332222 25666666666666655444
Q ss_pred CcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccc-ccccccccccCCceEEccCCcccCCCccccccc
Q 039778 314 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNC 392 (459)
Q Consensus 314 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 392 (459)
..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+.++..+
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 4566666666666666666633333 33446667777777666665 245566666777777777776666666666666
Q ss_pred CCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCC-cccEEeccCCcccccC
Q 039778 393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLD-YLEILDLSKNNIAGSL 457 (459)
Q Consensus 393 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~ 457 (459)
++|++|++++|++.+..|..+..+++|+.|++++|+++ .+|..+..++ +|+.|++++|++.+.-
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 77777777777766555666666677777777777766 5665566665 4777777777766543
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.3e-44 Score=352.83 Aligned_cols=449 Identities=21% Similarity=0.238 Sum_probs=275.8
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
+++++|++++|.+++..+..|.++++|++|++++|.+.+ +..+.++++|++|++++|.++......|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 478899999999888888888889999999999888765 345788899999999998887655567888999999999
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccc--cCCCcccEEEccC
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI--GSFPSLKTLYLKS 157 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~ 157 (459)
++|.+. .++...+..+++|++|++++|.+.... +..+..+++|++|++++|.+... .+..+ ..+++|++|++++
T Consensus 105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQAL--KSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCB--CHHHHGGGTTCEESEEECTT
T ss_pred CCCccC-ccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCccccc--CHHHhhccccccccEEECCC
Confidence 988876 555557888899999999998887754 56677888899998888877653 22222 3557788888888
Q ss_pred Ccccccccccc-ccc------------------------CcccccEEEccccccccccchhccCCC--CCcEEEcCCCcC
Q 039778 158 NNFAKTVTTTQ-GLC------------------------ELVHLQDLYIDRNDFIGSLPWCLANLT--SLRVLHVPDNQL 210 (459)
Q Consensus 158 ~~~~~~~~~~~-~~~------------------------~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~ 210 (459)
|.+....+... .+. ..++|+.|++++|.+.+..+..+..++ +|++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 77654433210 000 113455555555555555455554443 266666666655
Q ss_pred cCcCCCCcccCCCcccEEEeecceeeeeccccccccc---------------------------------CCceeeecC-
Q 039778 211 TGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNY---------------------------------SKLKIFHAN- 256 (459)
Q Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------------------------------~~l~~~~~~- 256 (459)
. .+.+..+..+++|+.|++++|.+... ....+..+ ++++.+...
T Consensus 261 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 261 N-VVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp C-EECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred C-ccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 4 22234455566666666666554421 11223333 334443321
Q ss_pred ccccCCcccCcCCCCCccEEEeccCcccc-ccchhhhh--cCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccc
Q 039778 257 NSLSGPFRLPTRSRKNIIALDISYNKLQG-HIPVEIGK--VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLT 333 (459)
Q Consensus 257 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 333 (459)
+...+.....+..+++|++|++++|.+.. .++...+. ..++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 12222222233444555555555443211 11111110 0134555555555555555566777777777777777776
Q ss_pred cccchhHHhcccccceeecccccccccc--------------------------ccccccccCCceEEccCCcccCCCcc
Q 039778 334 GEIPEHLAMGCFNLEYLLLSNNSLQGQL--------------------------FSKKNNLTKLKRLNLDGNHFIGDIPE 387 (459)
Q Consensus 334 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~--------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~ 387 (459)
+.++...+.++++|++|++++|++.+.. +..+..+++|++|++++|.+.+..+.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 5566555566777777777777665433 33445555666666666666555555
Q ss_pred cccccCCCcEEEcccccccCCCc--------ccccCcccccEEEcCCCcccCCCc-hhhcCCCcccEEeccCCcccccCC
Q 039778 388 SLSNCSSLQGLYISDNDITGSIP--------TWIGNISFLDAIIMPDNHLEGPIP-SEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 388 ~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
++..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+. .+| ..+..+++|+.|++++|+++ .+|
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~-~l~ 576 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLN-TLP 576 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCC-cCC
Confidence 55666666666666666553211 12455666677777776666 344 34667777777777777776 444
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.8e-44 Score=347.75 Aligned_cols=441 Identities=19% Similarity=0.183 Sum_probs=358.4
Q ss_pred cEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCC
Q 039778 5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT 82 (459)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (459)
+.++.++..++ ..|..+. +++++|++++|.+.+ +..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 56777777777 4444443 479999999998876 457999999999999999998888899999999999999999
Q ss_pred cceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccc
Q 039778 83 GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK 162 (459)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 162 (459)
.+. ......+..+++|++|++++|.+.... +..+..+++|++|++++|.+... ....+..+++|++|++++|.+..
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 92 PLI-FMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSI--KLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CCS-EECTTTTSSCTTCCEEECTTSCCSCGG-GSCCTTCTTCCEEECCSSCCCCC--CCCTTCCCTTCCEEECCSSCCCE
T ss_pred ccc-ccChhhhcccccccEeeccccCcccCC-cchhccCCcccEEECCCCccccc--CcccccCCcccCEEEcccCcccc
Confidence 987 455558999999999999999998864 46689999999999999998763 22334459999999999999875
Q ss_pred cccccccccCccccc--EEEccccccccccchhccCC-------------------------------------------
Q 039778 163 TVTTTQGLCELVHLQ--DLYIDRNDFIGSLPWCLANL------------------------------------------- 197 (459)
Q Consensus 163 ~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~l~~~------------------------------------------- 197 (459)
..+. .+..+++|+ .|++++|.+.+..+..+...
T Consensus 168 ~~~~--~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 168 LSKE--DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp ECHH--HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred cChh--hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence 4432 467788888 88999988776655444321
Q ss_pred --------CCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc-cccCCcccCcC
Q 039778 198 --------TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN-SLSGPFRLPTR 268 (459)
Q Consensus 198 --------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~ 268 (459)
..|++++++++.+. .+....+..+++|+.|++++|.+.. ....+..+++++.+.... .........+.
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISAS 322 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred hHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhh
Confidence 15777778877776 4556668889999999999998762 223467778888887543 33333345677
Q ss_pred CCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCC--CCcccCCCCCcEEEccCCccccccchhHHhcccc
Q 039778 269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSI--PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN 346 (459)
Q Consensus 269 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 346 (459)
.+++|++|++++|.+.+.++......+++|+.|++++|.+.... +..+..+++|++|++++|.+. .++...+..+++
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~ 401 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQ 401 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTT
T ss_pred ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCcc
Confidence 88999999999998887777766666999999999999988654 667889999999999999988 454455567999
Q ss_pred cceeecccccccccccc-ccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCC---CcccccCcccccEE
Q 039778 347 LEYLLLSNNSLQGQLFS-KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGS---IPTWIGNISFLDAI 422 (459)
Q Consensus 347 L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L 422 (459)
|++|++++|++.+..+. .+..+++|++|++++|.+....+..+..+++|++|++++|++.+. .+..+..+++|+.|
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 99999999999876544 488899999999999999988888899999999999999998762 33568889999999
Q ss_pred EcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778 423 IMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
++++|.+.+..|..+..+++|+.|++++|++++..|
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 999999998888999999999999999999998765
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-43 Score=350.77 Aligned_cols=446 Identities=22% Similarity=0.197 Sum_probs=253.4
Q ss_pred CCCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCc--ccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778 1 LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN 78 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 78 (459)
+++|++|++++|.+++..+..|..+++|++|++++|.+.... .|.++++|++|++++|.+....+..|+++++|++|+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 478899999999998888888989999999999998877633 488899999999999988866677888999999999
Q ss_pred ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccc--cCCCCCcEEecCCCccCCCCccccc-------------
Q 039778 79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY--RGLRKLRFLDLSGLRIRDGSKVLHS------------- 143 (459)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~------------- 143 (459)
+++|.+. ......+..+++|++|++++|.+.... +..+ ..+++|++|++++|.+... .+..
T Consensus 128 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 128 LSHNGLS-STKLGTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELSSNQIKEF--SPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp CCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECTTCCCCCB--CTTGGGGSSEECEEECT
T ss_pred CCCCccc-ccCchhhcccccCCEEEccCCcccccC-HHHhhccccccccEEECCCCccccc--Chhhhhhhhhhhhhhcc
Confidence 9988876 344446778888999999888877653 2222 2457788888877766543 2222
Q ss_pred --------------------------------------ccCCC--cccEEEccCCcccccccccccccCcccccEEEccc
Q 039778 144 --------------------------------------IGSFP--SLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDR 183 (459)
Q Consensus 144 --------------------------------------~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 183 (459)
+..++ +|+.|++++|.+....+. .+..+++|++|++++
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND--SFAWLPQLEYFFLEY 281 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT--TTTTCTTCCEEECCS
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc--cccCcccccEeeCCC
Confidence 22222 255555555544332221 344555666666666
Q ss_pred cccccccchhccCCCCCcEEEcCCCcCcC--------cCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeec
Q 039778 184 NDFIGSLPWCLANLTSLRVLHVPDNQLTG--------NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHA 255 (459)
Q Consensus 184 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (459)
|.+.+..+..+..+++|++|+++++...+ .+....+..+++|+.|++++|.+.. .....+..+++++.+..
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSL 360 (680)
T ss_dssp CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC-CCTTTTTTCTTCCEEEC
T ss_pred CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC-CChhHhccccCCcEEEC
Confidence 65555545455555555555554432211 0111234556667777776666543 22223444455554442
Q ss_pred Cc-----------------------------cccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecC
Q 039778 256 NN-----------------------------SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFN 306 (459)
Q Consensus 256 ~~-----------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 306 (459)
.. .........+..+++|+.|++++|.+.+.++...+..+++|+.|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 11 1111122344566778888888877766666555555777777777777
Q ss_pred cCCCCCCCcccCCCCCcEEEccCCccc--cccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCC
Q 039778 307 AFNGSIPSSFGDMNSLIYLDLSNNQLT--GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD 384 (459)
Q Consensus 307 ~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~ 384 (459)
.+....+..+..+++|+.|++++|.+. +.+|.. +..+++|++|++++|++++..+..|..+++|++|++++|.+...
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcc-cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 665444444444444444444444432 112221 22345555555555555444444444455555555555544322
Q ss_pred Cc--------ccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778 385 IP--------ESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 454 (459)
Q Consensus 385 ~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 454 (459)
.+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|+++
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 11 11344444555555555444222223444445555555555444322333344444444444444444
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.8e-43 Score=342.86 Aligned_cols=434 Identities=19% Similarity=0.155 Sum_probs=336.2
Q ss_pred cEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCC
Q 039778 5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT 82 (459)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (459)
++++.++..++.... .+. +++++|++++|.+.+ ...+.++++|++|++++|.++...+..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPD-DIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCT-TSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCC-CCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 578888888885443 332 789999999998876 346899999999999999999878889999999999999999
Q ss_pred cceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccc
Q 039778 83 GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK 162 (459)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 162 (459)
.+. ...+..+..+++|++|++++|.+.... +..++.+++|++|++++|.+... .++..++++++|++|++++|.+..
T Consensus 91 ~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 PIQ-SFSPGSFSGLTSLENLVAVETKLASLE-SFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCC-CCCTTSSTTCTTCCEEECTTSCCCCSS-SSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccc-ccChhhcCCcccCCEEEccCCcccccc-ccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCccee
Confidence 987 455568999999999999999998874 46699999999999999988752 267889999999999999998876
Q ss_pred cccccccccCcccc----cEEEccccccccccchhcc-------------------------------------------
Q 039778 163 TVTTTQGLCELVHL----QDLYIDRNDFIGSLPWCLA------------------------------------------- 195 (459)
Q Consensus 163 ~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~------------------------------------------- 195 (459)
..+. .+..+.+| .++++++|.+....+..+.
T Consensus 168 ~~~~--~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 168 ITVN--DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp ECTT--TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred cChh--hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 5432 23333333 2555555554433333222
Q ss_pred -------------------------------------CCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeee
Q 039778 196 -------------------------------------NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIP 238 (459)
Q Consensus 196 -------------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 238 (459)
.+++|++++++++.+. .++ .+..+++|+.|++++|.+. .
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~-~ 321 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLK-Q 321 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCS-S
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccCc-c
Confidence 2334444444444432 221 3455566667777666652 2
Q ss_pred cccccccccCCceeeecCcc-ccCCcccCcCCCCCccEEEeccCcccccc--chhhhhcCCCccEEEeecCcCCCCCCCc
Q 039778 239 ISLEPFFNYSKLKIFHANNS-LSGPFRLPTRSRKNIIALDISYNKLQGHI--PVEIGKVLPNLGFLSITFNAFNGSIPSS 315 (459)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 315 (459)
.. .+ .+++++.+..... ... ......+++|++|++++|.+.+.. +..+. .+++|+.|++++|.+.. .+..
T Consensus 322 lp--~~-~l~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~-~~~~ 394 (606)
T 3vq2_A 322 FP--TL-DLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAII-MSAN 394 (606)
T ss_dssp CC--CC-CCSSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEEE-ECCC
T ss_pred cc--cC-CCCccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCcccc-chhh
Confidence 11 22 5555555553322 111 225567889999999999887442 44444 48999999999998875 3477
Q ss_pred ccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccC-CCcccccccCC
Q 039778 316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIG-DIPESLSNCSS 394 (459)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 394 (459)
+..+++|+.|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 88999999999999999855554566779999999999999998888889999999999999999987 36788899999
Q ss_pred CcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778 395 LQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 395 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
|++|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|+++ .+|
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p 537 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSK 537 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEE
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccC
Confidence 999999999999888888999999999999999999888999999999999999999998 666
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-42 Score=349.22 Aligned_cols=439 Identities=21% Similarity=0.225 Sum_probs=253.7
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC---CcccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG---SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN 78 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 78 (459)
+++++|++++|.+++..+..|.++++|++|++++|.... +..|.++++|++|++++|.+....+..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 689999999999998889999999999999999995433 55789999999999999999888899999999999999
Q ss_pred ccCCcceeeecc-ccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCC--CcccEEEc
Q 039778 79 LMATGFKGTFDV-QELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF--PSLKTLYL 155 (459)
Q Consensus 79 l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l 155 (459)
+++|.+.+..+. ..+..+++|++|++++|.+....++..+..+++|++|++++|.+... .+..+..+ ++|+.|++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~--~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV--CEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC--CSGGGHHHHHCSSCCCEE
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee--CHHHcccccCCccceEEC
Confidence 999988753332 24888999999999999998876667899999999999999987654 33344333 45555555
Q ss_pred cCCcccccccccccccCc--------------------------------------------------------------
Q 039778 156 KSNNFAKTVTTTQGLCEL-------------------------------------------------------------- 173 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 173 (459)
++|.+....+. .+..+
T Consensus 182 ~~n~l~~~~~~--~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 182 AANSLYSRVSV--DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp CCSBSCCCCCC--CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred CCCcccccccc--chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 55544332211 11111
Q ss_pred ------ccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccccccccc
Q 039778 174 ------VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNY 247 (459)
Q Consensus 174 ------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 247 (459)
++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+.+..+..+++|+.|++++|.+. ......+..+
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 337 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGL 337 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSC
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCC
Confidence 33444444444444444444444444444444444443 222333444444555555444432 1112233334
Q ss_pred CCceeeecCc-cccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEE
Q 039778 248 SKLKIFHANN-SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLD 326 (459)
Q Consensus 248 ~~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 326 (459)
++++.+.... .........+..+++|++|++++|.+. .++. +++|+.+++++|.+... +. ...+++.++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~L~l~~N~l~~l-~~---~~~~l~~L~ 407 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPDIFLSGNKLVTL-PK---INLTANLIH 407 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSEEEEESCCCCCC-CC---CCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-cccC-----CCCcchhccCCCCcccc-cc---cccccceee
Confidence 4444443221 111111222334444555555444443 1111 34444444444444321 11 122344444
Q ss_pred ccCCccccccchhHHhcccccceeecccccccccccc-ccccccCCceEEccCCcccC-----CCcccccccCCCcEEEc
Q 039778 327 LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFS-KKNNLTKLKRLNLDGNHFIG-----DIPESLSNCSSLQGLYI 400 (459)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l 400 (459)
+++|++.+.-.......+++|+.|++++|++.+.... .+..+++|++|++++|.+.. ..+..+..+++|++|++
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 4444444211112223466666666666666543221 23345566666666665542 22234555566666666
Q ss_pred ccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778 401 SDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
++|.+.+..+..+..+++|+.|+|++|.+++..+..+. ++|+.|++++|++++..|
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence 66666655555555666666666666666543333332 556666666666655544
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-42 Score=336.23 Aligned_cols=447 Identities=21% Similarity=0.205 Sum_probs=282.4
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
++|++|++++|.+++..+..|.++++|++|++++|.+.+ +..+..+++|++|++++|.++...+..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 357777777777776666677777777777777776655 234677777777777777776555556777777777777
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN 159 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (459)
++|.+........+..+++|++|++++|.......+..+..+++|++|+++++.+... .+..+..+++|++|+++++.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEECSB
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc--ChhhhhccccCceEecccCc
Confidence 7776652112235666777777777777632222234566777777777777766543 55566667777777777666
Q ss_pred ccccccccccccCcccccEEEcccccccccc--c-hhccCCCCCcEEEcCCCcCcCcCC---CCcccCCCcccEEEeecc
Q 039778 160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSL--P-WCLANLTSLRVLHVPDNQLTGNLS---SSPLMHLTSIEVLLLSNN 233 (459)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~ 233 (459)
....... .+..+++|++|++++|.+.+.. + .....+++|+.|+++++.+.+... ...+..+++++.+++++|
T Consensus 184 ~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 184 SAFLLEI--FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp STTHHHH--HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred ccccchh--hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 5432221 2344667777777777665431 1 112235667777776665542211 122345566777777777
Q ss_pred eeeeeccc-----ccccccCCceeeecCccccC------CcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEE
Q 039778 234 HFQIPISL-----EPFFNYSKLKIFHANNSLSG------PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLS 302 (459)
Q Consensus 234 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 302 (459)
.+.+.... ..+..+.+++.+........ ..........+|++|++++|.+. .+|..++..+++|+.|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEE
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEE
Confidence 66532221 11223333333321111000 00001123456788888887776 67777665578888888
Q ss_pred eecCcCCCCC---CCcccCCCCCcEEEccCCccccccch--hHHhcccccceeeccccccccccccccccccCCceEEcc
Q 039778 303 ITFNAFNGSI---PSSFGDMNSLIYLDLSNNQLTGEIPE--HLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLD 377 (459)
Q Consensus 303 L~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 377 (459)
+++|.+.+.. ...+..+++|+.|++++|.++ .++. ..+..+++|++|++++|+++ .++..+..+++|++|+++
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECT
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECC
Confidence 8888776533 233566777888888888776 4432 34556778888888888777 455556666777777777
Q ss_pred CCcccCCCccc------------------ccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcC
Q 039778 378 GNHFIGDIPES------------------LSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQ 439 (459)
Q Consensus 378 ~~~~~~~~~~~------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 439 (459)
+|.+... +.. ...+++|++|++++|++. .+|. ...+++|+.|+|++|++++..|..+..
T Consensus 419 ~N~l~~l-~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 495 (549)
T 2z81_A 419 STGIRVV-KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR 495 (549)
T ss_dssp TSCCSCC-CTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred CCCcccc-cchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence 7765422 111 136788999999999888 6665 456889999999999999777777889
Q ss_pred CCcccEEeccCCcccccCC
Q 039778 440 LDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~p 458 (459)
+++|+.|++++|++++..|
T Consensus 496 l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 496 LTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEEecCCCccCCCc
Confidence 9999999999999988765
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=328.80 Aligned_cols=435 Identities=22% Similarity=0.224 Sum_probs=338.6
Q ss_pred cEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCC
Q 039778 5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT 82 (459)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (459)
+.++.++..++.+ |..+ .+++++|++++|.+.+ ...|.++++|++|++++|.++...+..|.++++|++|+++++
T Consensus 10 ~~~~c~~~~l~~i-p~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKI-PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSC-CSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCcccc-CCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 4566776666643 3333 3689999999998876 447899999999999999998777888999999999999999
Q ss_pred cceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccc
Q 039778 83 GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK 162 (459)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 162 (459)
.+. ..+...+..+++|++|++++|.+.... +..++.+++|++|++++|.+... .++..++++++|++|++++|.+..
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 87 PIQ-SLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCC-EECTTTTTTCTTCCEEECTTSCCCCST-TCSCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cCC-ccCHhhhcCccccccccccccccccCC-CccccccccccEEecCCCcccee-cChhhhcccCCCCEEeCcCCccce
Confidence 887 556668999999999999999998874 33588999999999999988752 257889999999999999999876
Q ss_pred cccccccccCcccc----cEEEccccccccccchhccCCCCCcEEEcCCCcCcC--------------------------
Q 039778 163 TVTTTQGLCELVHL----QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG-------------------------- 212 (459)
Q Consensus 163 ~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------------------------- 212 (459)
..+. .+..+++| +.+++++|.+....+..+... +|++++++++....
T Consensus 164 ~~~~--~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 164 IYCT--DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp ECGG--GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred ecHH--HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 5432 46667777 899999999888777777654 78888887752110
Q ss_pred -------------------------------cCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccC
Q 039778 213 -------------------------------NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSG 261 (459)
Q Consensus 213 -------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (459)
...+..+..+++|+.++++++.+.. ....+..+ +++.+........
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCS
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCccc
Confidence 1112334556777788887776652 11223333 5555543322222
Q ss_pred CcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCC--CCcccCCCCCcEEEccCCccccccchh
Q 039778 262 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSI--PSSFGDMNSLIYLDLSNNQLTGEIPEH 339 (459)
Q Consensus 262 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~ 339 (459)
..+...+++|++|+++++...+..+. ..+++|+.|++++|.+.... +..+..+++|+.|++++|.+. .++..
T Consensus 318 --~l~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~ 391 (570)
T 2z63_A 318 --QFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391 (570)
T ss_dssp --SCCBCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE
T ss_pred --ccCcccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccc
Confidence 22234677888888888877654444 34788999999988876443 456778889999999999887 45544
Q ss_pred HHhcccccceeeccccccccccc-cccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc-CCCcccccCcc
Q 039778 340 LAMGCFNLEYLLLSNNSLQGQLF-SKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT-GSIPTWIGNIS 417 (459)
Q Consensus 340 ~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~ 417 (459)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..++
T Consensus 392 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp -EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred -ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 5568999999999999887654 56788999999999999998888888999999999999999987 46888899999
Q ss_pred cccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778 418 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 418 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
+|+.|++++|++.+..|..+..+++|+.|++++|++++..|
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 99999999999998889999999999999999999986544
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=339.07 Aligned_cols=436 Identities=21% Similarity=0.226 Sum_probs=334.6
Q ss_pred CCCCcEEEccCCc-ccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccc--cccCCCCc
Q 039778 1 LSNLKFLDLSHNS-FNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSS--LTALSSLR 75 (459)
Q Consensus 1 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~ 75 (459)
+++|++|++++|. +....++.|.++++|++|++++|.+.+ +..|.++++|++|++++|.+++..+.. +.++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 5788999999984 333457888999999999999998765 567889999999999999887655544 88899999
Q ss_pred EEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCC--CC------------------------------
Q 039778 76 KLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL--RK------------------------------ 123 (459)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~------------------------------ 123 (459)
+|++++|.+.+..+...+.++++|++|++++|.+.... +..+..+ ++
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 99999988874444446888999999999888776543 2222222 22
Q ss_pred CcEEecCCCccCCCCccccc------------------------------------ccC--CCcccEEEccCCccccccc
Q 039778 124 LRFLDLSGLRIRDGSKVLHS------------------------------------IGS--FPSLKTLYLKSNNFAKTVT 165 (459)
Q Consensus 124 L~~L~l~~~~~~~~~~~~~~------------------------------------~~~--~~~L~~L~l~~~~~~~~~~ 165 (459)
|+.|++++|.+... .+.. +.. .++|+.|++++|.+....+
T Consensus 206 L~~L~Ls~n~l~~~--~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 206 LEILDVSGNGWTVD--ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp BSEEBCSSCCSSTT--TTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred eeEEecCCCcCchh--HHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 66666666644321 1111 111 2578888888887765433
Q ss_pred ccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccccccc
Q 039778 166 TTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFF 245 (459)
Q Consensus 166 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 245 (459)
. .+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .+.+..+..+++|+.|++++|.+. ......+.
T Consensus 284 ~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~ 359 (844)
T 3j0a_A 284 R--VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFK 359 (844)
T ss_dssp C--CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSC
T ss_pred h--hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCC-ccChhhhc
Confidence 3 5778999999999999999888888999999999999999987 455677899999999999999875 33344567
Q ss_pred ccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCC-CcccCCCCCcE
Q 039778 246 NYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP-SSFGDMNSLIY 324 (459)
Q Consensus 246 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~ 324 (459)
.+++|+.+........ ....+++|+.|++++|.+. .+|.. ..+++.+++++|.+..... ..+..+++|+.
T Consensus 360 ~l~~L~~L~Ls~N~l~----~i~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~ 430 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQI 430 (844)
T ss_dssp SCCCCCEEEEETCCSC----CCSSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCE
T ss_pred CCCCCCEEECCCCCCC----cccCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccce
Confidence 7788888874332221 1233789999999999988 55543 5679999999999986432 23568899999
Q ss_pred EEccCCccccccchhHHhcccccceeecccccccc-----ccccccccccCCceEEccCCcccCCCcccccccCCCcEEE
Q 039778 325 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-----QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLY 399 (459)
Q Consensus 325 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 399 (459)
|++++|++++..+...+..+++|+.|++++|.+.. ..+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 431 L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 510 (844)
T 3j0a_A 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510 (844)
T ss_dssp EEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred eeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeE
Confidence 99999999844344444558999999999999863 3445678899999999999999988888899999999999
Q ss_pred cccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccC
Q 039778 400 ISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSL 457 (459)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 457 (459)
+++|.+.+..+..+. ++|+.|+|++|.+++..|..+ .+|+.|++++|++.+.-
T Consensus 511 Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 511 LNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICEC 563 (844)
T ss_dssp EESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred CCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccc
Confidence 999999965555554 899999999999998777654 57899999999998743
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-42 Score=336.23 Aligned_cols=434 Identities=17% Similarity=0.183 Sum_probs=273.8
Q ss_pred CCcEEEccCCcccccchhhhcCCccccEEEeccccccC-Ccccc-----------cCccCceEEcCCCCCCcccccccc-
Q 039778 3 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIE-----------GMNMLESLDLSGNKFNSSILSSLT- 69 (459)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~-----------~l~~L~~L~l~~~~~~~~~~~~~~- 69 (459)
+++.|+|+++.+++..+..+..+++|++|++++|.+.. ...+. .+.+|+ ++++.+.+....+..+.
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSCH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHHH
Confidence 57889999998888888888899999999998886421 00000 012232 33333222222221111
Q ss_pred ------------------cCCCCcEEEcc--CCcceeeeccccccCCCCCcEEECcccccCCc----------------c
Q 039778 70 ------------------ALSSLRKLNLM--ATGFKGTFDVQELDSLSNLEELDMSDNEIDNL----------------V 113 (459)
Q Consensus 70 ------------------~l~~L~~L~l~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------~ 113 (459)
....++.+.+. .+.+.+ ++. .+.++++|++|++++|.+... .
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 01112222222 234443 433 566666667776666666551 0
Q ss_pred Cccccc--CCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc-ccc-cccccccccC------cccccEEEccc
Q 039778 114 VPKDYR--GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN-FAK-TVTTTQGLCE------LVHLQDLYIDR 183 (459)
Q Consensus 114 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~------~~~L~~L~l~~ 183 (459)
+|..+. .+++|++|++++|.+... +|..++++++|+.|++++|. +.. ..+. .+.. +++|++|++++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~--~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINVACNRGISGEQLKD--DWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEECTTCTTSCHHHHHH--HHHHHHHSGGGGTCCEEECCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEECcCCCCCccccchH--HHHhhhccccCCCCCEEECCC
Confidence 255555 677777777776665543 66666677777777777766 443 1111 2222 36677777777
Q ss_pred cccccccch--hccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCC-ceeeecCcccc
Q 039778 184 NDFIGSLPW--CLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSK-LKIFHANNSLS 260 (459)
Q Consensus 184 ~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~ 260 (459)
|.+. .+|. .+..+++|++|++++|.+.+.++ .+..+++|+.|++++|.+. .....+..+++ ++.+.......
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCC
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcC
Confidence 7666 4555 66666777777777776665554 5666667777777776665 11223444555 55555322222
Q ss_pred CCcccCcCC--CCCccEEEeccCccccccchhhhh------cCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCcc
Q 039778 261 GPFRLPTRS--RKNIIALDISYNKLQGHIPVEIGK------VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332 (459)
Q Consensus 261 ~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~------~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 332 (459)
..++..+.. +++|++|++++|.+.+..|..+.. .+++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus 390 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp SSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred cccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 122323333 347888888888887666654430 256788888888888755444566678888888888888
Q ss_pred ccccchhHHhccc-------ccceeeccccccccccccccc--cccCCceEEccCCcccCCCcccccccCCCcEEEc---
Q 039778 333 TGEIPEHLAMGCF-------NLEYLLLSNNSLQGQLFSKKN--NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYI--- 400 (459)
Q Consensus 333 ~~~~~~~~~~~~~-------~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l--- 400 (459)
+ .++...+...+ +|++|++++|.++ .++..+. .+++|++|++++|.+.+ +|..+..+++|++|++
T Consensus 470 ~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 470 T-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp S-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred C-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 7 77766554332 8888888888887 4555555 78888888888888876 6777778888888888
Q ss_pred ---ccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778 401 ---SDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 454 (459)
Q Consensus 401 ---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 454 (459)
++|.+.+.+|..+..+++|+.|+|++|.+. .+|..+. ++|+.|++++|++.
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 456677778888888888888888888884 7777654 78888888888765
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.1e-41 Score=321.76 Aligned_cols=431 Identities=21% Similarity=0.229 Sum_probs=306.3
Q ss_pred cEEEccCCcccccchhhhcCCccccEEEeccccccCC--cccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCC
Q 039778 5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGS--INIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT 82 (459)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (459)
++|+++++.++. .+..+. ++|++|++++|.+.+. ..+..+++|++|++++|+++...+..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578888888874 344343 7888888888887763 35788888888888888888777778888888888888888
Q ss_pred cceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcc--cEEEccCCcc
Q 039778 83 GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL--KTLYLKSNNF 160 (459)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 160 (459)
.+. .++.. .+++|++|++++|.+.....|..++.+++|++|++++|.+.. ..+..+++| +.|++++|.+
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEECTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeecccc
Confidence 776 45442 688888888888888776556788888888888888887754 245566666 8888888776
Q ss_pred --cccccc------------------------cccccCcccccEEEccccc-------cccccchhccCCCCCcEEEcCC
Q 039778 161 --AKTVTT------------------------TQGLCELVHLQDLYIDRND-------FIGSLPWCLANLTSLRVLHVPD 207 (459)
Q Consensus 161 --~~~~~~------------------------~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~ 207 (459)
....+. ...+..+++|+.+++++|. +.+..+ .+..+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 222111 0112345566666666654 333333 455566667776666
Q ss_pred CcCcCcCCCCc--ccCCCcccEEEeecceeeeecccccc----cccCCceeeecCccccCCcc-cCcCC---CCCccEEE
Q 039778 208 NQLTGNLSSSP--LMHLTSIEVLLLSNNHFQIPISLEPF----FNYSKLKIFHANNSLSGPFR-LPTRS---RKNIIALD 277 (459)
Q Consensus 208 ~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~-~~~~~---~~~L~~L~ 277 (459)
+.+.+...... ....++|+.|++++|.+.+......+ ..++.++.+....... ..+ ..+.. ..+|+.|+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 55442111000 01134777777777766533332221 4455555554322111 111 01111 14688899
Q ss_pred eccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccch--hHHhcccccceeecccc
Q 039778 278 ISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPE--HLAMGCFNLEYLLLSNN 355 (459)
Q Consensus 278 l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~ 355 (459)
++++.+.. .+. ...+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .++. ..+..+++|++|++++|
T Consensus 309 l~~n~l~~-~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 309 VSGTRMVH-MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp EESSCCCC-CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEECCSS
T ss_pred cCCCcccc-ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEECCCC
Confidence 98887763 221 134899999999999999878888999999999999999998 4332 34556999999999999
Q ss_pred ccccccc-cccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCc
Q 039778 356 SLQGQLF-SKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP 434 (459)
Q Consensus 356 ~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 434 (459)
.+.+..+ ..+..+++|++|++++|.+.+..+..+. ++|++|++++|.+. .+|..+..+++|+.|++++|++. .+|
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~ 460 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCC
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccC
Confidence 9987444 4578889999999999999877766654 79999999999999 88888889999999999999999 677
Q ss_pred hh-hcCCCcccEEeccCCcccccC
Q 039778 435 SE-FCQLDYLEILDLSKNNIAGSL 457 (459)
Q Consensus 435 ~~-~~~~~~L~~L~l~~~~~~~~~ 457 (459)
.. +..+++|+.|++++|++++..
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHhccCCcccEEECcCCCCcccC
Confidence 65 889999999999999998753
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-40 Score=329.16 Aligned_cols=414 Identities=19% Similarity=0.233 Sum_probs=215.6
Q ss_pred CCcEEEccCCcccccchhhhcCCccccEEEe-ccccccCCcccc------------------------------------
Q 039778 3 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSL-AYNRLEGSINIE------------------------------------ 45 (459)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~------------------------------------ 45 (459)
+++.|+|+++.+.+..+..+..+++|++|++ ++|.+.+...+.
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 6889999999999999999999999999999 666432220000
Q ss_pred -----------------cCccCceEEcCC--CCCCcccccccccCCCCcEEEccCCcceee-----------------ec
Q 039778 46 -----------------GMNMLESLDLSG--NKFNSSILSSLTALSSLRKLNLMATGFKGT-----------------FD 89 (459)
Q Consensus 46 -----------------~l~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~ 89 (459)
....++.+.+.. |.++. .|..+.++++|++|++++|.+.+. ++
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 011122222222 23332 444455555555555555554431 22
Q ss_pred ccccc--CCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCc-cCCCCccccccc-------CCCcccEEEccCCc
Q 039778 90 VQELD--SLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR-IRDGSKVLHSIG-------SFPSLKTLYLKSNN 159 (459)
Q Consensus 90 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-------~~~~L~~L~l~~~~ 159 (459)
. .+. .+++|++|++++|.+.... |..+..+++|+.|++++|. +.. ..+|..++ .+++|+.|++++|.
T Consensus 483 ~-~l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg-~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 483 E-ELSWSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISA-AQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp S-CCCGGGCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCTTSCH-HHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred h-hhhhccCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCCCccc-ccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 2 333 5555555555555443322 4455555555555555554 322 00332222 22355555555555
Q ss_pred ccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCc-ccEEEeecceeeee
Q 039778 160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTS-IEVLLLSNNHFQIP 238 (459)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~ 238 (459)
+...+. ...+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+ +..+..+++ |+.|++++|.+..
T Consensus 560 L~~ip~-~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~l-p~~l~~l~~~L~~L~Ls~N~L~~- 633 (876)
T 4ecn_A 560 LEEFPA-SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EI-PEDFCAFTDQVEGLGFSHNKLKY- 633 (876)
T ss_dssp CCBCCC-HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CC-CTTSCEECTTCCEEECCSSCCCS-
T ss_pred CCccCC-hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cc-hHHHhhccccCCEEECcCCCCCc-
Confidence 542211 012445555555555555554 333 4455555555555555544 33 223444454 5555555554431
Q ss_pred cccccccccC--CceeeecCc-cccCCc-----ccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCC
Q 039778 239 ISLEPFFNYS--KLKIFHANN-SLSGPF-----RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG 310 (459)
Q Consensus 239 ~~~~~~~~~~--~l~~~~~~~-~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 310 (459)
.. ..+.... +|+.+.... ...+.. ......+++|+.|++++|.+. .+|..++..+++|+.|++++|.+..
T Consensus 634 lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 634 IP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS 711 (876)
T ss_dssp CC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC
T ss_pred Cc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc
Confidence 10 1111111 122221100 000000 001112346677777777666 5666665556677777777776663
Q ss_pred CCCCcccC-------CCCCcEEEccCCccccccchhHH-hcccccceeeccccccccccccccccccCCceEEccC----
Q 039778 311 SIPSSFGD-------MNSLIYLDLSNNQLTGEIPEHLA-MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG---- 378 (459)
Q Consensus 311 ~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~---- 378 (459)
.....+.. +++|+.|++++|+++ .+|..++ ..+++|+.|++++|++.+ ++..+..+++|+.|++++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 32222222 226777777777666 5665554 346677777777776665 455566667777777654
Q ss_pred --CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCC
Q 039778 379 --NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPI 433 (459)
Q Consensus 379 --~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 433 (459)
|.+.+..|.++..+++|++|++++|++ +.+|..+. ++|+.|+|++|++....
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 555556666666666777777777766 35665544 46677777777665333
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-38 Score=308.66 Aligned_cols=446 Identities=18% Similarity=0.179 Sum_probs=333.5
Q ss_pred CCCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778 1 LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN 78 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 78 (459)
|+...+.+.+++.++.... .+ .++|++|++++|.+.+ +..+.++++|++|++++|+++...+..|.++++|++|+
T Consensus 4 C~~~~~c~~~~~~l~~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSEEECTTSCCSSCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCceEECCCCccccccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 4555667888888875444 33 2799999999998876 45789999999999999999977788999999999999
Q ss_pred ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCccc-ccccCCCcccEEEccC
Q 039778 79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSIGSFPSLKTLYLKS 157 (459)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~ 157 (459)
+++|.+. ..+...+..+++|++|++++|.+.....+..+..+++|++|++++|..... ++ ..+..+++|++|++++
T Consensus 81 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 81 LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE--IRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp CTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--ECTTTTTTCCEEEEEEEEE
T ss_pred CCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc--cCHhhhhcccccCeeeccC
Confidence 9999887 555557899999999999999998765577899999999999999874332 43 5788999999999999
Q ss_pred CcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcC--CCCcccCCCcccEEEeeccee
Q 039778 158 NNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNL--SSSPLMHLTSIEVLLLSNNHF 235 (459)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~ 235 (459)
|.+....+. .+..+++|++|+++++.........+..+++|++|+++++.+.+.. +......+++|+.++++++.+
T Consensus 158 n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 158 LSLRNYQSQ--SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp TTCCEECTT--TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred CcccccChh--hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence 998764433 5778899999999999876544444457899999999999887421 223345678999999999987
Q ss_pred eeeccc---ccccccCCceeeecCcccc-C------CcccCcCCCCCccEEEeccCcccccc----chhhhhcCCCccEE
Q 039778 236 QIPISL---EPFFNYSKLKIFHANNSLS-G------PFRLPTRSRKNIIALDISYNKLQGHI----PVEIGKVLPNLGFL 301 (459)
Q Consensus 236 ~~~~~~---~~~~~~~~l~~~~~~~~~~-~------~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L 301 (459)
...... ..+..+..++.+...+... + ........+.+++.+.+.++.+.... ........++|+.+
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L 315 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence 643221 1223344455444221111 1 11123456788999999888665211 01122336899999
Q ss_pred EeecCcCCCCCCCcccCCCCCcEEEccCCccccccchh--HHhcccccceeeccccccccccc--cccccccCCceEEcc
Q 039778 302 SITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEH--LAMGCFNLEYLLLSNNSLQGQLF--SKKNNLTKLKRLNLD 377 (459)
Q Consensus 302 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~l~ 377 (459)
++++|.+.......+..+++|++|++++|.+.+.++.. .+..+++|++|++++|++++... ..+..+++|++|+++
T Consensus 316 ~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp EEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred EeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 99999987433333467899999999999998666533 24568999999999999986432 457889999999999
Q ss_pred CCcccCCCcccccccCCCcEEEcccccccCCCcccc------------------cCcccccEEEcCCCcccCCCchhhcC
Q 039778 378 GNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWI------------------GNISFLDAIIMPDNHLEGPIPSEFCQ 439 (459)
Q Consensus 378 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------~~~~~L~~L~l~~~~~~~~~~~~~~~ 439 (459)
+|++. .+|..+..+++|++|++++|.+. .++..+ ..+++|+.|+|++|++. .+|. ...
T Consensus 396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~ 471 (549)
T 2z81_A 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASL 471 (549)
T ss_dssp TCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGG
T ss_pred CCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-ccc
Confidence 99988 56777888889999999999876 333322 25677888888888777 6665 456
Q ss_pred CCcccEEeccCCcccccCC
Q 039778 440 LDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 440 ~~~L~~L~l~~~~~~~~~p 458 (459)
+++|+.|++++|++++..|
T Consensus 472 l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 472 FPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CTTCCEEECCSSCCCCCCT
T ss_pred CccCCEEecCCCccCCcCH
Confidence 7888888888888886554
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-39 Score=314.87 Aligned_cols=381 Identities=19% Similarity=0.226 Sum_probs=302.2
Q ss_pred CcccccCccCceEEcCCCCCCcc-----------------cccccc--cCCCCcEEEccCCcceeeeccccccCCCCCcE
Q 039778 41 SINIEGMNMLESLDLSGNKFNSS-----------------ILSSLT--ALSSLRKLNLMATGFKGTFDVQELDSLSNLEE 101 (459)
Q Consensus 41 ~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 101 (459)
+..+.++++|++|++++|.++.. .+..+. ++++|++|++++|.+.+.++ ..+.++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCE
Confidence 44588899999999999999864 888888 99999999999998876665 47889999999
Q ss_pred EECcccc-cCCccCcccccCC------CCCcEEecCCCccCCCCcccc--cccCCCcccEEEccCCcccccccccccccC
Q 039778 102 LDMSDNE-IDNLVVPKDYRGL------RKLRFLDLSGLRIRDGSKVLH--SIGSFPSLKTLYLKSNNFAKTVTTTQGLCE 172 (459)
Q Consensus 102 L~l~~~~-~~~~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 172 (459)
|++++|. +....+|..+..+ ++|++|++++|.+.. ++. .++.+++|+.|++++|.+.+..+ .+..
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~---ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~ 351 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYNQLEGKLP---AFGS 351 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS---CCCHHHHTTCTTCCEEECCSCCCEEECC---CCEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc---cCchhhhccCCCCCEEeCcCCcCccchh---hhCC
Confidence 9999998 7651226666665 999999999999874 777 89999999999999999873333 4778
Q ss_pred cccccEEEccccccccccchhccCCCC-CcEEEcCCCcCcCcCCCCcccC--CCcccEEEeecceeeeecccccccccCC
Q 039778 173 LVHLQDLYIDRNDFIGSLPWCLANLTS-LRVLHVPDNQLTGNLSSSPLMH--LTSIEVLLLSNNHFQIPISLEPFFNYSK 249 (459)
Q Consensus 173 ~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 249 (459)
+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .++ ..+.. +++|+.|++++|.+.+.... .+..
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~--- 424 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDP--- 424 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCC-SCCCTTCSSCEEEEECCSSCTTTTTTC-SSCT---
T ss_pred CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccc-hhhhhcccCccCEEECcCCcCCCcchh-hhcc---
Confidence 899999999999988 67777888888 999999999987 554 34444 34899999999876532211 0100
Q ss_pred ceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCC-------CC
Q 039778 250 LKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMN-------SL 322 (459)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-------~L 322 (459)
.......+++|++|++++|.+. .+|..++..+++|+.|++++|.+.......+.... +|
T Consensus 425 -------------~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 425 -------------LDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp -------------TCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGC
T ss_pred -------------cccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCc
Confidence 0011114568999999999998 78888887799999999999999854444444333 99
Q ss_pred cEEEccCCccccccchhHH-hcccccceeeccccccccccccccccccCCceEEc------cCCcccCCCcccccccCCC
Q 039778 323 IYLDLSNNQLTGEIPEHLA-MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNL------DGNHFIGDIPESLSNCSSL 395 (459)
Q Consensus 323 ~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L 395 (459)
+.|++++|.++ .+|..++ ..+++|++|++++|++.+ ++..+..+++|++|++ ++|.+.+..|..+..+++|
T Consensus 491 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 99999999998 8887776 469999999999999997 7888889999999999 5677788889999999999
Q ss_pred cEEEcccccccCCCcccccCcccccEEEcCCCcccCCC-----chhhcC---CCcccEEeccCCccc
Q 039778 396 QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPI-----PSEFCQ---LDYLEILDLSKNNIA 454 (459)
Q Consensus 396 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~---~~~L~~L~l~~~~~~ 454 (459)
++|++++|++. .+|..+. ++|+.|+|++|++.... |..... +...+..++++|+..
T Consensus 569 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 569 TQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp CEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred CEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCccc
Confidence 99999999994 8887765 89999999999876422 222222 233355677777654
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.2e-38 Score=311.21 Aligned_cols=445 Identities=22% Similarity=0.219 Sum_probs=296.1
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
+++++|||++|.++...+.+|.++++|++|++++|.+.. +.+|.++++|++|+|++|+++...+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 378999999999998888999999999999999998876 456899999999999999998777778999999999999
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCc----ccEEEc
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPS----LKTLYL 155 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----L~~L~l 155 (459)
++|.+. .++...+..+++|++|++++|.+.....+..+..+++|++|++++|.+... .+..+..+.+ ...+++
T Consensus 132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--CGGGGHHHHTCTTCCCEEEC
T ss_pred CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc--ccccccchhhhhhhhhhhhc
Confidence 999887 566667899999999999999998877788899999999999999987653 2233322222 223444
Q ss_pred cCCccccccccc----------------------ccccCcccccEEEc------------------------------cc
Q 039778 156 KSNNFAKTVTTT----------------------QGLCELVHLQDLYI------------------------------DR 183 (459)
Q Consensus 156 ~~~~~~~~~~~~----------------------~~~~~~~~L~~L~l------------------------------~~ 183 (459)
+.+.+....... ..+..+..++...+ ..
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 444332211110 00111122222111 11
Q ss_pred cccc---cccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccccccc---------------
Q 039778 184 NDFI---GSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFF--------------- 245 (459)
Q Consensus 184 ~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------------- 245 (459)
+... ......+.....++.+.+.++.+.. ...+.....++.+++.++.+.... ...+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEE---CGGGGSCCCCSEEEEESCEESSCC-CCBCTTCCEEEEESCCSCCB
T ss_pred hhhcccccchhhhhhhhccccccccccccccc---ccccccchhhhhhhcccccccCcC-cccchhhhhcccccccCCCC
Confidence 0000 0001112223455555555554331 122344455666666665543211 11111
Q ss_pred ----ccCCceeeecCc-cc--cCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCC-CCCccc
Q 039778 246 ----NYSKLKIFHANN-SL--SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGS-IPSSFG 317 (459)
Q Consensus 246 ----~~~~l~~~~~~~-~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~ 317 (459)
.+++++.+.... .. ............+|+.+++..+.... .+..+ ..+++|+.+++..+..... ....+.
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCC-TTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccc-cccccccchhhhhccccccccccccc
Confidence 122222222110 00 00111111223344444444443331 11221 1256667777666554433 234567
Q ss_pred CCCCCcEEEccCCccccccchhHHhcccccceeecccccccc-ccccccccccCCceEEccCCcccCCCcccccccCCCc
Q 039778 318 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ 396 (459)
Q Consensus 318 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 396 (459)
.+++++.++++.|.+. ......+..+++++.|++++|.+.. ..+..|..+++|++|++++|.+.+..|.+|..+++|+
T Consensus 443 ~l~~l~~l~ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccccccccccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 7888889999988887 5555566678899999999987543 4667788899999999999999988888899999999
Q ss_pred EEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCC-CcccEEeccCCccccc
Q 039778 397 GLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQL-DYLEILDLSKNNIAGS 456 (459)
Q Consensus 397 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~ 456 (459)
+|++++|.+.+..+..+..+++|+.|+|++|++++..|+.+..+ ++|+.|+|++|++.+.
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999997777788899999999999999998888888887 6899999999999863
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-38 Score=306.95 Aligned_cols=436 Identities=23% Similarity=0.234 Sum_probs=312.7
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCC--cccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGS--INIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
...++++++++.++.+. ..+. ++|++|++++|.+.+. ..+.++++|++|++++|.++...+..|.++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCSCC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCccCC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34578999999998644 3332 7999999999988764 47899999999999999998777888999999999999
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcc--cEEEccC
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL--KTLYLKS 157 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~ 157 (459)
++|.+. .++.. .+++|++|++++|.+.....+..+..+++|++|+++++.+... .+..+++| +.|++++
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEE
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeec
Confidence 999887 56543 7899999999999998876667899999999999999888652 34444555 9999998
Q ss_pred Ccc--ccccccc------------------------ccccCcccccEEEcccccc----ccccchhccCCCCCcEEEcCC
Q 039778 158 NNF--AKTVTTT------------------------QGLCELVHLQDLYIDRNDF----IGSLPWCLANLTSLRVLHVPD 207 (459)
Q Consensus 158 ~~~--~~~~~~~------------------------~~~~~~~~L~~L~l~~~~~----~~~~~~~l~~~~~L~~L~l~~ 207 (459)
|.+ ....+.. ..+..+++|+.+++++|.. .......+..++.|+.+++.+
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 877 3322210 0122345566666655421 001112344555666666655
Q ss_pred CcCcCcCCC--CcccCCCcccEEEeecceeeeecccccc----cccCCceeeecCccccCCcccCc---CCCCCccEEEe
Q 039778 208 NQLTGNLSS--SPLMHLTSIEVLLLSNNHFQIPISLEPF----FNYSKLKIFHANNSLSGPFRLPT---RSRKNIIALDI 278 (459)
Q Consensus 208 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~---~~~~~L~~L~l 278 (459)
+.+.+.... ......++|+.|++++|.+.+......+ ..++.++................ ....+|++|++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 443321000 0011234788888888876643333221 34444444432211110000000 01256999999
Q ss_pred ccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccch--hHHhcccccceeeccccc
Q 039778 279 SYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPE--HLAMGCFNLEYLLLSNNS 356 (459)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~ 356 (459)
+++.+.. .+ ....+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .++. ..+..+++|++|++++|.
T Consensus 339 ~~n~~~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 339 SDTPFIH-MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp ESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSC
T ss_pred cCCCccc-cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCc
Confidence 9998753 22 1134899999999999999888888999999999999999998 4443 335579999999999999
Q ss_pred cccc-cccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCch
Q 039778 357 LQGQ-LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS 435 (459)
Q Consensus 357 i~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 435 (459)
+.+. ....+..+++|++|++++|.+.+..+..+. ++|++|++++|.+. .+|..+..+++|+.|++++|+++ .+|.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 490 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD 490 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCH
Confidence 9873 444578899999999999999876665554 69999999999998 78877779999999999999999 6776
Q ss_pred h-hcCCCcccEEeccCCcccccC
Q 039778 436 E-FCQLDYLEILDLSKNNIAGSL 457 (459)
Q Consensus 436 ~-~~~~~~L~~L~l~~~~~~~~~ 457 (459)
. +..+++|+.|++++|++.|..
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TSTTTCTTCCCEECCSCCBCCCH
T ss_pred HHHhcCCCCCEEEecCCCcCCCc
Confidence 6 889999999999999998864
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-39 Score=307.21 Aligned_cols=413 Identities=20% Similarity=0.222 Sum_probs=316.6
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
++|++|++++|.+++..+..|.++++|++|++++|.+.+ +..+.++++|++|++++|+++ ..+.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 579999999999998888999999999999999998876 457899999999999999997 44444 8999999999
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCC--cEEecCCCccCCCCccccc--------------
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL--RFLDLSGLRIRDGSKVLHS-------------- 143 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~~~~~~~~~~-------------- 143 (459)
++|.+.....+..+..+++|++|++++|.+... .+..+++| ++|++++|.+......+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 999887422235788999999999999988753 46667777 9999998877111112222
Q ss_pred ------------ccCCCcccEEEccCCc-------ccccccccccccCcccccEEEccccccccccchhcc---CCCCCc
Q 039778 144 ------------IGSFPSLKTLYLKSNN-------FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLA---NLTSLR 201 (459)
Q Consensus 144 ------------~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~ 201 (459)
+..+++|+.+++++|. +.+. ...+..+++|+.|++.++.+.+..+..+. ..++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI---LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH---HHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecc---hhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 3357788888888875 2222 22467788999999998877653322221 246899
Q ss_pred EEEcCCCcCcCcCCCCcc----cCCCcccEEEeecceeeeeccccccccc---CCceeeecCccccCCcccCcCCCCCcc
Q 039778 202 VLHVPDNQLTGNLSSSPL----MHLTSIEVLLLSNNHFQIPISLEPFFNY---SKLKIFHANNSLSGPFRLPTRSRKNII 274 (459)
Q Consensus 202 ~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~L~ 274 (459)
+|++++|.+.+.++...+ ..+++|+.++++++.+. .....+..+ .+++.+........... ....+++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~--~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~ 327 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC--SCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEecccccccee--cchhhhhcccccCceeEEEcCCCcccccc-chhhCCccc
Confidence 999999988766643322 78889999999888762 111112111 33444443222211111 126789999
Q ss_pred EEEeccCccccccchhhhhcCCCccEEEeecCcCCC--CCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeec
Q 039778 275 ALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG--SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 352 (459)
Q Consensus 275 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 352 (459)
+|++++|.+.+..|..+.. +++|+.|++++|.+.+ ..+..+..+++|++|++++|.+.+.++...+..+++|++|++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp EEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred EEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 9999999999767766654 8999999999999985 344568899999999999999985588777777899999999
Q ss_pred cccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCccc-ccCcccccEEEcCCCcccC
Q 039778 353 SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTW-IGNISFLDAIIMPDNHLEG 431 (459)
Q Consensus 353 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 431 (459)
++|++++..+..+. ++|++|++++|.+. .+|..+..+++|++|++++|++. .+|.. +..+++|+.|++++|++.+
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 99999876666554 79999999999998 67777779999999999999999 56664 8889999999999999985
Q ss_pred C
Q 039778 432 P 432 (459)
Q Consensus 432 ~ 432 (459)
.
T Consensus 483 ~ 483 (520)
T 2z7x_B 483 S 483 (520)
T ss_dssp C
T ss_pred c
Confidence 4
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.4e-38 Score=311.77 Aligned_cols=413 Identities=19% Similarity=0.198 Sum_probs=303.1
Q ss_pred ccccEEEeccccccC--CcccccCccCceEEc-CCCCCCcccccc-----------------------------------
Q 039778 26 SSLKNLSLAYNRLEG--SINIEGMNMLESLDL-SGNKFNSSILSS----------------------------------- 67 (459)
Q Consensus 26 ~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l-~~~~~~~~~~~~----------------------------------- 67 (459)
.+++.|+|+++.+.+ +..+.++++|++|+| +++.+....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 468888888887765 556888888888888 555443220000
Q ss_pred --------------c--ccCCCCcEEEccC--CcceeeeccccccCCCCCcEEECcccccCCc----------------c
Q 039778 68 --------------L--TALSSLRKLNLMA--TGFKGTFDVQELDSLSNLEELDMSDNEIDNL----------------V 113 (459)
Q Consensus 68 --------------~--~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------~ 113 (459)
+ ....+++.+.+.. |.+.+ ++. .+.++++|++|++++|.+... .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 1112333333332 45553 554 788999999999999999881 1
Q ss_pred Cccccc--CCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc-ccc-cccc-cc----cccCcccccEEEcccc
Q 039778 114 VPKDYR--GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN-FAK-TVTT-TQ----GLCELVHLQDLYIDRN 184 (459)
Q Consensus 114 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~-~~----~~~~~~~L~~L~l~~~ 184 (459)
+|..++ .+++|++|++++|.+... +|..++++++|+.|++++|+ +.. ..+. .. .+..+++|++|++++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 377776 999999999999987765 88899999999999999998 654 2221 11 2234559999999999
Q ss_pred ccccccch--hccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCC-ceeeecCccccC
Q 039778 185 DFIGSLPW--CLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSK-LKIFHANNSLSG 261 (459)
Q Consensus 185 ~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 261 (459)
.+. .+|. .+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+. . ....+..+++ |+.+........
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~-lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-E-IPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-C-CCTTSCEECTTCCEEECCSSCCC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-c-chHHHhhccccCCEEECcCCCCC
Confidence 998 6777 8999999999999999988 665 7889999999999999877 2 2234666666 777764432222
Q ss_pred CcccCcCCC--CCccEEEeccCccccccchhh---h-hcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc
Q 039778 262 PFRLPTRSR--KNIIALDISYNKLQGHIPVEI---G-KVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335 (459)
Q Consensus 262 ~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~---~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 335 (459)
.++..+... ++|+.|++++|.+.+.+|... . ...++|+.|++++|.+.......+..+++|+.|++++|.+. .
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-c
Confidence 333333333 348889999888876554322 1 01457889999988888444444557888999999988887 7
Q ss_pred cchhHHhc-------ccccceeeccccccccccccccc--cccCCceEEccCCcccCCCcccccccCCCcEEEccc----
Q 039778 336 IPEHLAMG-------CFNLEYLLLSNNSLQGQLFSKKN--NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISD---- 402 (459)
Q Consensus 336 ~~~~~~~~-------~~~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~---- 402 (459)
+|...+.. +++|++|++++|++. .++..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 77766543 348899999999888 5566665 78889999999998886 677788888899998866
Q ss_pred --ccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778 403 --NDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 454 (459)
Q Consensus 403 --~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 454 (459)
|.+.+.+|..+..+++|+.|+|++|.+ +.+|..+. ++|+.|+|++|++.
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 677778888888889999999999988 47887654 68899999999876
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-37 Score=293.16 Aligned_cols=365 Identities=21% Similarity=0.162 Sum_probs=216.7
Q ss_pred ccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEE
Q 039778 48 NMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFL 127 (459)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 127 (459)
++|++|++++|.++...+..+.++++|++|+++++.+...++...+..+++|++|++++|.+.... +..+..+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE-TGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC-TTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC-hhhccCcccCCEE
Confidence 566666666666665556666666666666666666554455555666666666666666665543 4556666666666
Q ss_pred ecCCCccCCCCcccc--cccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCC--CCCcEE
Q 039778 128 DLSGLRIRDGSKVLH--SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANL--TSLRVL 203 (459)
Q Consensus 128 ~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L 203 (459)
++++|.+.+. .+. .+..+++|++|++++|.+....+. ..+..+++|++|++++|.+.+..+..+..+ ..|+.+
T Consensus 109 ~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 109 TLTQCNLDGA--VLSGNFFKPLTSLEMLVLRDNNIKKIQPA-SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp ECTTSCCBTH--HHHSSTTTTCTTCCEEECCSSBCCSCCCC-GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred eCCCCCCCcc--ccCcccccCcccCCEEECCCCccCccCcc-cccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 6666665432 222 255666666666666665443222 114455666666666666555555444433 456666
Q ss_pred EcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCcc
Q 039778 204 HVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKL 283 (459)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (459)
+++++.+.+ +....+.. ........+++|++|++++|.+
T Consensus 186 ~l~~n~l~~-~~~~~~~~----------------------------------------~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 186 RLSSITLQD-MNEYWLGW----------------------------------------EKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp ECTTCBCTT-CSTTCTTH----------------------------------------HHHCCTTTTCEEEEEECTTSCC
T ss_pred ccccCcccc-cchhhccc----------------------------------------cccccccccceeeeEecCCCcc
Confidence 666655442 11111000 0000011123344444444444
Q ss_pred ccccchhhhhc--CCCccEEEeecCcCCCC----------CCCccc--CCCCCcEEEccCCccccccchhHHhcccccce
Q 039778 284 QGHIPVEIGKV--LPNLGFLSITFNAFNGS----------IPSSFG--DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349 (459)
Q Consensus 284 ~~~~~~~~~~~--~~~L~~L~L~~~~~~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 349 (459)
.+..+..+... .++++.++++++..... ....+. ..++|+.|++++|.+.+ .+...+..+++|++
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 303 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQ 303 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred cccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhcccCCCCCE
Confidence 43333333221 14455555544432211 111111 12577888888887773 33334455778888
Q ss_pred eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL 429 (459)
Q Consensus 350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 429 (459)
|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 88888887776677777778888888888887766677777788888888888888766677777788888888888888
Q ss_pred cCCCchhhcCCCcccEEeccCCcccccCC
Q 039778 430 EGPIPSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 430 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
.+..+..+..+++|+.|++++|++++..|
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 75445556777888888888888887776
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.2e-37 Score=288.71 Aligned_cols=136 Identities=24% Similarity=0.237 Sum_probs=65.8
Q ss_pred CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 350 (459)
++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcc-cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEE
Confidence 4455555555555533333322 2455555555555555444444555555555555555554 3333333345555555
Q ss_pred eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCC
Q 039778 351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGS 408 (459)
Q Consensus 351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 408 (459)
++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++...
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 5555555444444444555555555555555443333344445555555555554433
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.6e-35 Score=276.29 Aligned_cols=345 Identities=26% Similarity=0.325 Sum_probs=214.9
Q ss_pred CccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEEC
Q 039778 25 LSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDM 104 (459)
Q Consensus 25 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 104 (459)
++++++|+++++.+.....+..+++|++|++++|.+....+ +.++++|++|+++++.+.. .+ .+..+++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT--PLANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Ch--hhcCCCCCCEEEC
Confidence 45677777777766665556677777777777777654332 6677777777777776652 22 2666777777777
Q ss_pred cccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccc
Q 039778 105 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRN 184 (459)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 184 (459)
++|.+.... .+..+++|++|++++|.+... + .+..+++|+.|++.+ .+... ..+..+++|++|++++|
T Consensus 120 ~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~---~-~~~~l~~L~~L~l~~-~~~~~----~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 120 FNNQITDID---PLKNLTNLNRLELSSNTISDI---S-ALSGLTSLQQLSFGN-QVTDL----KPLANLTTLERLDISSN 187 (466)
T ss_dssp CSSCCCCCG---GGTTCTTCSEEEEEEEEECCC---G-GGTTCTTCSEEEEEE-SCCCC----GGGTTCTTCCEEECCSS
T ss_pred CCCCCCCCh---HHcCCCCCCEEECCCCccCCC---h-hhccCCcccEeecCC-cccCc----hhhccCCCCCEEECcCC
Confidence 777666652 266777777777777766542 2 356677777777652 22211 12556667777777777
Q ss_pred ccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcc
Q 039778 185 DFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFR 264 (459)
Q Consensus 185 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (459)
.+.+. ..+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+...
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~-------------------------- 236 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDI-------------------------- 236 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCC--------------------------
T ss_pred cCCCC--hhhccCCCCCEEEecCCcccccc---cccccCCCCEEECCCCCcccc--------------------------
Confidence 66543 23556677777777777665322 255566777777766654311
Q ss_pred cCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcc
Q 039778 265 LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 344 (459)
Q Consensus 265 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 344 (459)
..+..+++|++|++++|.+.+..+ ...+++|+.|++++|.+....+ +..+++|+.|++++|.+. .++. +..+
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l 308 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-DISP--ISNL 308 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS-CCGG--GGGC
T ss_pred hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc-Cchh--hcCC
Confidence 012344567777777776663322 3336777777777777664322 666777777777777766 3332 3456
Q ss_pred cccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEc
Q 039778 345 FNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIM 424 (459)
Q Consensus 345 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 424 (459)
++|++|++++|++.+..+ +..+++|++|++++|++.+. ..+..+++|++|++++|++.+..| +..+++|+.|++
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 777777777777665433 55667777777777776643 346667777777777777765444 566777777777
Q ss_pred CCCcccC
Q 039778 425 PDNHLEG 431 (459)
Q Consensus 425 ~~~~~~~ 431 (459)
++|.+++
T Consensus 383 ~~n~~~~ 389 (466)
T 1o6v_A 383 NDQAWTN 389 (466)
T ss_dssp CCEEEEC
T ss_pred cCCcccC
Confidence 7776663
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.3e-35 Score=275.33 Aligned_cols=344 Identities=24% Similarity=0.349 Sum_probs=287.0
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccC
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMA 81 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (459)
+++++|+++++.++... .+..+++|++|++++|.+.+...+..+++|++|++++|.+....+ +.++++|++|++++
T Consensus 46 ~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp HTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred ccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 57999999999987543 477899999999999998886669999999999999999875444 99999999999999
Q ss_pred CcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778 82 TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA 161 (459)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 161 (459)
|.+.. .+ .+..+++|++|++++|.+... ..+..+++|++|++.+ .+.. . ..+..+++|+.|++++|.+.
T Consensus 122 n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~-~~~~---~-~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 122 NQITD-ID--PLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGN-QVTD---L-KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp SCCCC-CG--GGTTCTTCSEEEEEEEEECCC---GGGTTCTTCSEEEEEE-SCCC---C-GGGTTCTTCCEEECCSSCCC
T ss_pred CCCCC-Ch--HHcCCCCCCEEECCCCccCCC---hhhccCCcccEeecCC-cccC---c-hhhccCCCCCEEECcCCcCC
Confidence 98773 33 488999999999999998886 3588999999999963 3333 2 23889999999999999886
Q ss_pred ccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccc
Q 039778 162 KTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL 241 (459)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 241 (459)
... .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+....
T Consensus 191 ~~~----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~-- 259 (466)
T 1o6v_A 191 DIS----VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I--GTLASLTNLTDLDLANNQISNLA-- 259 (466)
T ss_dssp CCG----GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCG--
T ss_pred CCh----hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c--hhhhcCCCCCEEECCCCccccch--
Confidence 542 36788999999999999887655 6678999999999998873 3 45788999999999998765211
Q ss_pred ccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCC
Q 039778 242 EPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNS 321 (459)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 321 (459)
.+..+++|++|++++|.+.+ ++. ...+++|+.|++++|.+.+.. .+..+++
T Consensus 260 ------------------------~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~ 310 (466)
T 1o6v_A 260 ------------------------PLSGLTKLTELKLGANQISN-ISP--LAGLTALTNLELNENQLEDIS--PISNLKN 310 (466)
T ss_dssp ------------------------GGTTCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTT
T ss_pred ------------------------hhhcCCCCCEEECCCCccCc-ccc--ccCCCccCeEEcCCCcccCch--hhcCCCC
Confidence 13456889999999999884 443 344899999999999998643 3788999
Q ss_pred CcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcc
Q 039778 322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYIS 401 (459)
Q Consensus 322 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 401 (459)
|+.|++++|.+++..+ +..+++|+.|++++|++.+. ..+..+++|++|++++|++.+..| +..+++|+.|+++
T Consensus 311 L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp CSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 9999999999985444 45699999999999999864 578889999999999999987765 7889999999999
Q ss_pred cccccC
Q 039778 402 DNDITG 407 (459)
Q Consensus 402 ~~~~~~ 407 (459)
+|++.+
T Consensus 384 ~n~~~~ 389 (466)
T 1o6v_A 384 DQAWTN 389 (466)
T ss_dssp CEEEEC
T ss_pred CCcccC
Confidence 999985
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.2e-36 Score=290.38 Aligned_cols=414 Identities=22% Similarity=0.246 Sum_probs=304.3
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
++|++|++++|.+++..+..|.++++|++|++++|.+.+ +..|.++++|++|++++|.++ ..+.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 579999999999999988999999999999999998876 456899999999999999997 44444 8999999999
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCC--cEEecCCCcc--CCCCccccc------------
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL--RFLDLSGLRI--RDGSKVLHS------------ 143 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~------------ 143 (459)
++|.+...-....+..+++|++|+++++.+... .+..+++| ++|++++|.+ ... .+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~--~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGG--ETESLQIPNTTVLHLV 202 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSS--SCCEEEECCEEEEEEE
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEeeccccccccc--CcccccccCcceEEEE
Confidence 999987322235788999999999999988764 34445555 9999998877 322 2222
Q ss_pred --------------ccCCCcccEEEccCCccc--ccccccccccCcccccEEEcccccccccc----chhccCCCCCcEE
Q 039778 144 --------------IGSFPSLKTLYLKSNNFA--KTVTTTQGLCELVHLQDLYIDRNDFIGSL----PWCLANLTSLRVL 203 (459)
Q Consensus 144 --------------~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L 203 (459)
+..+++|+.+++++|... ........+..++.|+.+++.++.+.+.. +..+ ..++|++|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEE
Confidence 235667888888877421 11112224566778888888777654321 1222 24589999
Q ss_pred EcCCCcCcCcCCCCcc----cCCCcccEEEeecceeeeeccccccc---ccCCceeeecCccccCCcccCcCCCCCccEE
Q 039778 204 HVPDNQLTGNLSSSPL----MHLTSIEVLLLSNNHFQIPISLEPFF---NYSKLKIFHANNSLSGPFRLPTRSRKNIIAL 276 (459)
Q Consensus 204 ~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 276 (459)
++++|.+.+.++...+ ..++.|+.+++..+.+. ...+.+. ...+++.+........... ....+++|++|
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~--~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L 358 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL--FSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCS--SCHHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceee--cChhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEE
Confidence 9999888766644332 44555555555544431 1101111 1123444442222111111 12578899999
Q ss_pred EeccCccccccchhhhhcCCCccEEEeecCcCCCCC--CCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccc
Q 039778 277 DISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSI--PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN 354 (459)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 354 (459)
++++|.+.+..|..+.. +++|+.|++++|.+.... +..+..+++|+.|++++|.+.+.++...+..+++|++|++++
T Consensus 359 ~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp ECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred ECCCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 99999999766666544 899999999999998643 356888999999999999998558887777899999999999
Q ss_pred cccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCccc-ccCcccccEEEcCCCcccCCC
Q 039778 355 NSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTW-IGNISFLDAIIMPDNHLEGPI 433 (459)
Q Consensus 355 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~ 433 (459)
|++++..+..+. ++|++|++++|.+. .+|..+..+++|++|++++|++. .+|.. +..+++|+.|++++|++.+..
T Consensus 438 n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 438 NMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 999876655543 79999999999988 56666669999999999999999 66665 889999999999999998643
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.9e-35 Score=286.28 Aligned_cols=425 Identities=21% Similarity=0.170 Sum_probs=301.8
Q ss_pred CCCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778 1 LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN 78 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 78 (459)
+++|++|++++|.++...+++|.++++|++|++++|.+.. ...|.++++|++|++++|+++...+..|+++++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 5799999999999999999999999999999999999876 34689999999999999999877777899999999999
Q ss_pred ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCC----cEEecCCCccCCCCc---------------
Q 039778 79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL----RFLDLSGLRIRDGSK--------------- 139 (459)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~--------------- 139 (459)
+++|.+........+..+++|++|++++|.+.... +..+..+.++ ..++++.+.+.....
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~ 233 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 233 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccccc-cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhc
Confidence 99998864333456788999999999999887764 3444333322 234444443321100
Q ss_pred -------ccccccCCCcccEEEccC------------------------------Ccccccc-cccccccCcccccEEEc
Q 039778 140 -------VLHSIGSFPSLKTLYLKS------------------------------NNFAKTV-TTTQGLCELVHLQDLYI 181 (459)
Q Consensus 140 -------~~~~~~~~~~L~~L~l~~------------------------------~~~~~~~-~~~~~~~~~~~L~~L~l 181 (459)
....+..+..++...+.. +...... .....+....+++.+.+
T Consensus 234 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 313 (635)
T 4g8a_A 234 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSL 313 (635)
T ss_dssp CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEE
T ss_pred ccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccc
Confidence 000111122222211110 0000000 00001122334444444
Q ss_pred cccccccccchhccCC---------------------CCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec-
Q 039778 182 DRNDFIGSLPWCLANL---------------------TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI- 239 (459)
Q Consensus 182 ~~~~~~~~~~~~l~~~---------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~- 239 (459)
.++.+.... .+... +.|+.+.+..+.... ......+++|+.++++.|.+....
T Consensus 314 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~---~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 314 VSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp ESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC---BCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC---Ccccccccccccchhhccccccccc
Confidence 444332211 12223 344444444443331 122346788999999888765322
Q ss_pred ccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCC
Q 039778 240 SLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDM 319 (459)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 319 (459)
.........+++.+.............+..+++|+.+++.++......+...+..+++++.++++.+.+....+..+..+
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~ 468 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 468 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc
Confidence 22234455666666654444444445567789999999999887766666666668999999999999988888888999
Q ss_pred CCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEE
Q 039778 320 NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLY 399 (459)
Q Consensus 320 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 399 (459)
+.++.|++++|...+.++...+..+++|++|++++|++.+..+..|..+++|++|+|++|.+.+..+..+..+++|++|+
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 99999999999765455555667799999999999999988889999999999999999999988888899999999999
Q ss_pred cccccccCCCcccccCc-ccccEEEcCCCcccC
Q 039778 400 ISDNDITGSIPTWIGNI-SFLDAIIMPDNHLEG 431 (459)
Q Consensus 400 l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 431 (459)
+++|++.+..|..+..+ ++|+.|+|++|++.+
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999998888888887 689999999998763
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.7e-35 Score=271.52 Aligned_cols=350 Identities=19% Similarity=0.194 Sum_probs=203.9
Q ss_pred hhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCC
Q 039778 19 LSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSN 98 (459)
Q Consensus 19 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 98 (459)
+..+..+++|++|+++++.+.+...+..+++|++|++++|.++.. .+..+++|++|++++|.+.+ . .+..+++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~---~~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-L---DVTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-C---CCTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-e---ecCCCCc
Confidence 334555666777777766666555566667777777777666542 16666677777777666552 2 2556667
Q ss_pred CcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccE
Q 039778 99 LEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178 (459)
Q Consensus 99 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 178 (459)
|++|++++|.+..+ + +..+++|++|++++|.+... .++.+++|+.|++++|...+.. .+..+++|++
T Consensus 108 L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N~l~~l-----~l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~ 174 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL--D--VSQNPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNKKITKL----DVTPQTQLTT 174 (457)
T ss_dssp CCEEECCSSCCSCC--C--CTTCTTCCEEECTTSCCSCC-----CCTTCTTCCEEECTTCSCCCCC----CCTTCTTCCE
T ss_pred CCEEECCCCcCCee--c--CCCCCcCCEEECCCCcccee-----ccccCCcCCEEECCCCCccccc----ccccCCcCCE
Confidence 77777777766654 2 56666777777777666552 2556667777777666432222 2455666777
Q ss_pred EEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCcc
Q 039778 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNS 258 (459)
Q Consensus 179 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (459)
|++++|.+.+. + +..+++|++|++++|.+.+ + .+..+++|+.|++++|.+..
T Consensus 175 L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~--------------------- 226 (457)
T 3bz5_A 175 LDCSFNKITEL-D--VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTE--------------------- 226 (457)
T ss_dssp EECCSSCCCCC-C--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSC---------------------
T ss_pred EECCCCcccee-c--cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCcccc---------------------
Confidence 77777766553 2 5566677777777766652 2 35566777777777665542
Q ss_pred ccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccch
Q 039778 259 LSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPE 338 (459)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 338 (459)
.++..+++|+.|++++|.+.+ ++. ..+++|+.++++.+ +|+.+++++|...+.+|.
T Consensus 227 ------ip~~~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~ 282 (457)
T 3bz5_A 227 ------IDVTPLTQLTYFDCSVNPLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA 282 (457)
T ss_dssp ------CCCTTCTTCSEEECCSSCCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC
T ss_pred ------cCccccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc
Confidence 012344566666666666653 221 12555666555443 233444444443333331
Q ss_pred hHHhcccccceeecccccccccccc--------ccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCc
Q 039778 339 HLAMGCFNLEYLLLSNNSLQGQLFS--------KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP 410 (459)
Q Consensus 339 ~~~~~~~~L~~L~l~~~~i~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 410 (459)
..+++|+.|++++|...+..+. .+..+++|++|++++|.+.+. .+..+++|+.|++++|++.+
T Consensus 283 ---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--- 353 (457)
T 3bz5_A 283 ---EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--- 353 (457)
T ss_dssp ---TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB---
T ss_pred ---cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC---
Confidence 2244555555555443222211 123346777777777777753 26677777777777777763
Q ss_pred ccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778 411 TWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 411 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 459 (459)
+++|..|++++|.+.+. .++..|+.+++++|+++|.+|+
T Consensus 354 -----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 354 -----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp -----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred -----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 23455555666666543 2445566777888888887774
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.5e-34 Score=266.76 Aligned_cols=372 Identities=21% Similarity=0.247 Sum_probs=210.3
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCcc-------------CceEEcCCCCCCccccc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNM-------------LESLDLSGNKFNSSILS 66 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~-------------L~~L~l~~~~~~~~~~~ 66 (459)
++|++|+++++.+ +..|..+..+++|++|++++|.+.+ +..+..+.+ +++|++++|.++. .+.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 5789999999999 6888889999999999999998764 555677665 4899999998764 332
Q ss_pred ccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccC
Q 039778 67 SLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGS 146 (459)
Q Consensus 67 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 146 (459)
..++|++|+++++.+.+ ++. .+++|++|++++|.+..+ +.. .++|++|++++|.+.. ++ .+++
T Consensus 89 ---~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l--~~~---~~~L~~L~L~~n~l~~---lp-~~~~ 151 (454)
T 1jl5_A 89 ---LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKAL--SDL---PPLLEYLGVSNNQLEK---LP-ELQN 151 (454)
T ss_dssp ---CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCC--CSC---CTTCCEEECCSSCCSS---CC-CCTT
T ss_pred ---CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcc--cCC---CCCCCEEECcCCCCCC---Cc-ccCC
Confidence 23789999999888773 432 247899999999988765 221 2689999999998875 55 5888
Q ss_pred CCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCccc
Q 039778 147 FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE 226 (459)
Q Consensus 147 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 226 (459)
+++|++|++++|.+...... ..+|++|++++|.+.+ .| .+..+++|++|++++|.+.+ ++. ..++|+
T Consensus 152 l~~L~~L~l~~N~l~~lp~~------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~ 218 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLE 218 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCC
T ss_pred CCCCCEEECCCCcCcccCCC------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCccc
Confidence 99999999999988654322 2489999999998876 44 57888999999999988773 322 235889
Q ss_pred EEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecC
Q 039778 227 VLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFN 306 (459)
Q Consensus 227 ~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 306 (459)
.|++++|.+.. ...+. .+++|++|++++|.+. .+|. .+++|+.|++++|
T Consensus 219 ~L~l~~n~l~~---lp~~~-----------------------~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N 267 (454)
T 1jl5_A 219 SIVAGNNILEE---LPELQ-----------------------NLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDN 267 (454)
T ss_dssp EEECCSSCCSS---CCCCT-----------------------TCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSS
T ss_pred EEECcCCcCCc---ccccC-----------------------CCCCCCEEECCCCcCC-cccc----cccccCEEECCCC
Confidence 99998886651 11233 3455566666665555 2332 1355666666666
Q ss_pred cCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccc-cCCceEEccCCcccCCC
Q 039778 307 AFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNL-TKLKRLNLDGNHFIGDI 385 (459)
Q Consensus 307 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-~~L~~L~l~~~~~~~~~ 385 (459)
.+.+. +.. .++|+.|++++|.++ .++. ..++|++|++++|.+.+. ... ++|++|++++|.+.+ +
T Consensus 268 ~l~~l-~~~---~~~L~~L~ls~N~l~-~l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-l 332 (454)
T 1jl5_A 268 YLTDL-PEL---PQSLTFLDVSENIFS-GLSE----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-L 332 (454)
T ss_dssp CCSCC-CCC---CTTCCEEECCSSCCS-EESC----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-C
T ss_pred ccccc-Ccc---cCcCCEEECcCCccC-cccC----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-c
Confidence 55532 111 245666666666555 2221 124566666666655431 112 356666666665553 2
Q ss_pred cccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccC--CCchhhcCC-------------CcccEEeccC
Q 039778 386 PESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG--PIPSEFCQL-------------DYLEILDLSK 450 (459)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~ 450 (459)
|.. +++|++|++++|.+. .+|. .+++|+.|++++|++.+ .+|..+..+ ++|+.|++++
T Consensus 333 p~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 333 PAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp CCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------
T ss_pred ccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC
Confidence 322 345666666666555 3443 24556666666666554 455555444 5666666666
Q ss_pred Ccccc--cCC
Q 039778 451 NNIAG--SLP 458 (459)
Q Consensus 451 ~~~~~--~~p 458 (459)
|++++ .+|
T Consensus 406 N~l~~~~~iP 415 (454)
T 1jl5_A 406 NPLREFPDIP 415 (454)
T ss_dssp ----------
T ss_pred CcCCccccch
Confidence 66665 555
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=265.62 Aligned_cols=320 Identities=19% Similarity=0.193 Sum_probs=207.5
Q ss_pred cEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccc
Q 039778 29 KNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNE 108 (459)
Q Consensus 29 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 108 (459)
+.++.++..+...+. .-.+++++|++++|+++...+..|.++++|++|++++|.+. .+....+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCc
Confidence 455555555444221 12357778888888777666677777788888888777766 3444467777777777777777
Q ss_pred cCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccccccc
Q 039778 109 IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIG 188 (459)
Q Consensus 109 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 188 (459)
+..+. +..+..+++|++|++++|.+... .+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+.+
T Consensus 92 l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 92 LKLIP-LGVFTGLSNLTKLDISENKIVIL--LDYMFQDLYNLKSLEVGDNDLVYISHR--AFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CCSCC-TTSSTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEEECCTTCCEECTT--SSTTCTTCCEEEEESCCCSS
T ss_pred CCccC-cccccCCCCCCEEECCCCccccC--ChhHccccccCCEEECCCCccceeChh--hccCCCCCCEEECCCCcCcc
Confidence 76653 34466677777777777766543 344556666666666666655433222 34455555555555555554
Q ss_pred ccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcC
Q 039778 189 SLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTR 268 (459)
Q Consensus 189 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 268 (459)
..+..+..+++|+.|+++++.+. .+....+..+
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l---------------------------------------------- 199 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRL---------------------------------------------- 199 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCC-EECTTCSCSC----------------------------------------------
T ss_pred cChhHhcccCCCcEEeCCCCcCc-EeChhhcccC----------------------------------------------
Confidence 44444555555555555555443 2222333333
Q ss_pred CCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccc
Q 039778 269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE 348 (459)
Q Consensus 269 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 348 (459)
++|++|++++|...+.++..... ..+|+.|++++|.+.......+..+++|+.|++++|.+. .++...+..+++|+
T Consensus 200 --~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~ 275 (477)
T 2id5_A 200 --YRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQ 275 (477)
T ss_dssp --TTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCC
T ss_pred --cccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCC
Confidence 44555555554444445544443 457888888888887555556778888888888888887 55555566688888
Q ss_pred eeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778 349 YLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 349 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 406 (459)
+|++++|++.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|++.
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 8888888888777777888888888888888887766667777888888888888776
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=263.84 Aligned_cols=320 Identities=22% Similarity=0.272 Sum_probs=199.1
Q ss_pred eEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCC
Q 039778 52 SLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 131 (459)
Q Consensus 52 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 131 (459)
.++.++..++ ..+..+ .+++++|+++++.+. .++...+..+++|++|++++|.+.... +..+..+++|++|++++
T Consensus 15 ~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCC
Confidence 4555555544 223222 246666666666655 333345666666666666666655543 34555666666666666
Q ss_pred CccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCc
Q 039778 132 LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLT 211 (459)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 211 (459)
|.+... .+..+.++++|++|++++|.+....+. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 90 n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 90 NRLKLI--PLGVFTGLSNLTKLDISENKIVILLDY--MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp SCCCSC--CTTSSTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CcCCcc--CcccccCCCCCCEEECCCCccccCChh--HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 655442 222345555566666655555433222 2444555555555555544444444444555555555554443
Q ss_pred CcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhh
Q 039778 212 GNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEI 291 (459)
Q Consensus 212 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 291 (459)
.++...+..+++ |+.|+++++.+. .++...
T Consensus 166 -~~~~~~l~~l~~------------------------------------------------L~~L~l~~n~i~-~~~~~~ 195 (477)
T 2id5_A 166 -SIPTEALSHLHG------------------------------------------------LIVLRLRHLNIN-AIRDYS 195 (477)
T ss_dssp -SCCHHHHTTCTT------------------------------------------------CCEEEEESCCCC-EECTTC
T ss_pred -ccChhHhcccCC------------------------------------------------CcEEeCCCCcCc-EeChhh
Confidence 222223334444 444444444444 233333
Q ss_pred hhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCC
Q 039778 292 GKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKL 371 (459)
Q Consensus 292 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L 371 (459)
+..+++|+.|++++|......+.......+|+.|++++|.++ .++...+..+++|+.|++++|.+.+..+..|..+++|
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred cccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccC
Confidence 334788888888888776555555555568888888888887 7777677778888888888888887777778888888
Q ss_pred ceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccC
Q 039778 372 KRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG 431 (459)
Q Consensus 372 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (459)
++|++++|.+.+..+.++..+++|++|++++|.+....+..+..+++|+.|++++|++.+
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 888888888887777788888888888888888886555667788888888888888774
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.6e-32 Score=248.01 Aligned_cols=309 Identities=25% Similarity=0.389 Sum_probs=175.1
Q ss_pred cccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCC
Q 039778 42 INIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL 121 (459)
Q Consensus 42 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 121 (459)
..+..+++|++|+++++.+... ..+..+++|++|++++|.+. .++. +..+++|++|++++|.+... ..+..+
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~---~~~~~l 109 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI---SALQNL 109 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC---GGGTTC
T ss_pred ccchhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc---hHHcCC
Confidence 3444556666666666655421 23555566666666555544 2221 45555555555555555443 234555
Q ss_pred CCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCc
Q 039778 122 RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLR 201 (459)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 201 (459)
++|++|+++++.+... +. +..+++|+.|++++|.. ....+ .+..+++|+
T Consensus 110 ~~L~~L~l~~n~i~~~---~~-~~~l~~L~~L~l~~n~~--------------------------~~~~~-~~~~l~~L~ 158 (347)
T 4fmz_A 110 TNLRELYLNEDNISDI---SP-LANLTKMYSLNLGANHN--------------------------LSDLS-PLSNMTGLN 158 (347)
T ss_dssp TTCSEEECTTSCCCCC---GG-GTTCTTCCEEECTTCTT--------------------------CCCCG-GGTTCTTCC
T ss_pred CcCCEEECcCCcccCc---hh-hccCCceeEEECCCCCC--------------------------ccccc-chhhCCCCc
Confidence 5555555555554432 11 44445555555554432 22211 244455555
Q ss_pred EEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccC
Q 039778 202 VLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYN 281 (459)
Q Consensus 202 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 281 (459)
+|+++++.+.+ + ..+..+++|+.|++++|.+.
T Consensus 159 ~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~n~l~--------------------------------------------- 190 (347)
T 4fmz_A 159 YLTVTESKVKD-V--TPIANLTDLYSLSLNYNQIE--------------------------------------------- 190 (347)
T ss_dssp EEECCSSCCCC-C--GGGGGCTTCSEEECTTSCCC---------------------------------------------
T ss_pred EEEecCCCcCC-c--hhhccCCCCCEEEccCCccc---------------------------------------------
Confidence 55555554431 1 11334444444444443221
Q ss_pred ccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccccc
Q 039778 282 KLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL 361 (459)
Q Consensus 282 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 361 (459)
.++. ...+++|+.+++++|.+..... +..+++|++|++++|.++ .++. +..+++|++|++++|.+++.
T Consensus 191 ----~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 191 ----DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp ----CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred ----cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC-
Confidence 1111 1124445555555554443221 455566666666666665 3333 44567777777777776652
Q ss_pred ccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCC
Q 039778 362 FSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLD 441 (459)
Q Consensus 362 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 441 (459)
..+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++..| +..++
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 4566778888888888887754 456778888888888888887777778888888888888888885444 77888
Q ss_pred cccEEeccCCccc
Q 039778 442 YLEILDLSKNNIA 454 (459)
Q Consensus 442 ~L~~L~l~~~~~~ 454 (459)
+|+.|++++|+++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 8889999888876
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.7e-32 Score=247.85 Aligned_cols=306 Identities=25% Similarity=0.357 Sum_probs=191.2
Q ss_pred hcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcE
Q 039778 22 LAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEE 101 (459)
Q Consensus 22 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 101 (459)
+..+++|++|+++++.+.+...+..+++|++|++++|.+++..+ +..+++|++|++++|.+.. + ..+..+++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I--SALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C--GGGTTCTTCSE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c--hHHcCCCcCCE
Confidence 45678999999999988887779999999999999999875433 8999999999999998763 3 36889999999
Q ss_pred EECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEc
Q 039778 102 LDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181 (459)
Q Consensus 102 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 181 (459)
|++++|.+.... . +..+++|++|++++|.... ....+..+++|+.|++++|.+..... +..+++|++|++
T Consensus 115 L~l~~n~i~~~~--~-~~~l~~L~~L~l~~n~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l 184 (347)
T 4fmz_A 115 LYLNEDNISDIS--P-LANLTKMYSLNLGANHNLS---DLSPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSL 184 (347)
T ss_dssp EECTTSCCCCCG--G-GTTCTTCCEEECTTCTTCC---CCGGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEEC
T ss_pred EECcCCcccCch--h-hccCCceeEEECCCCCCcc---cccchhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEc
Confidence 999999988863 3 8899999999999986544 23347788889999988887654332 556677777777
Q ss_pred cccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccC
Q 039778 182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSG 261 (459)
Q Consensus 182 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (459)
++|.+.+..+ +..+++|+.++++++.+.+ . ..+..+++|+.|++++|.
T Consensus 185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~--~~~~~~~~L~~L~l~~n~--------------------------- 232 (347)
T 4fmz_A 185 NYNQIEDISP--LASLTSLHYFTAYVNQITD-I--TPVANMTRLNSLKIGNNK--------------------------- 232 (347)
T ss_dssp TTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCCEEECCSSC---------------------------
T ss_pred cCCccccccc--ccCCCccceeecccCCCCC-C--chhhcCCcCCEEEccCCc---------------------------
Confidence 7776654333 5556666777666665542 1 113444444444444443
Q ss_pred CcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHH
Q 039778 262 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA 341 (459)
Q Consensus 262 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 341 (459)
+. ..+. ...+++|+.|++++|.+... ..+..+++|+.|++++|.++ .++ .+
T Consensus 233 ---------------------l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~~ 283 (347)
T 4fmz_A 233 ---------------------IT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-DIS--VL 283 (347)
T ss_dssp ---------------------CC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG--GG
T ss_pred ---------------------cC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC-CCh--hh
Confidence 22 1111 12245555555555544432 23444555555555555554 221 12
Q ss_pred hcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccc
Q 039778 342 MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDI 405 (459)
Q Consensus 342 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 405 (459)
..+++|++|++++|++.+..+..+..+++|++|++++|++.+..+ +..+++|++|++++|++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 234445555555554444444444444445555555444443322 33444444444444443
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.2e-32 Score=255.39 Aligned_cols=371 Identities=23% Similarity=0.282 Sum_probs=256.3
Q ss_pred CCCCcEEEccCCcccccchhhhcCCccc-------------cEEEeccccccCCcccccCccCceEEcCCCCCCcccccc
Q 039778 1 LSNLKFLDLSHNSFNNSVLSSLAGLSSL-------------KNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSS 67 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 67 (459)
+++|++|++++|.+++..+..+..+++| ++|+++++.+.+.+.+ .++|++|++++|.++. .+.
T Consensus 33 L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~-lp~- 108 (454)
T 1jl5_A 33 VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTE-LPE- 108 (454)
T ss_dssp -CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSS-CCC-
T ss_pred ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCc-ccc-
Confidence 4788999999999998889888888765 9999999987774443 4789999999999875 443
Q ss_pred cccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCC
Q 039778 68 LTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF 147 (459)
Q Consensus 68 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 147 (459)
..++|++|++++|.+.+ ++. + .++|++|++++|.+..+ + .+..+++|++|++++|.+.. ++.. .
T Consensus 109 --~~~~L~~L~l~~n~l~~-l~~--~--~~~L~~L~L~~n~l~~l--p-~~~~l~~L~~L~l~~N~l~~---lp~~---~ 172 (454)
T 1jl5_A 109 --LPQSLKSLLVDNNNLKA-LSD--L--PPLLEYLGVSNNQLEKL--P-ELQNSSFLKIIDVDNNSLKK---LPDL---P 172 (454)
T ss_dssp --CCTTCCEEECCSSCCSC-CCS--C--CTTCCEEECCSSCCSSC--C-CCTTCTTCCEEECCSSCCSC---CCCC---C
T ss_pred --ccCCCcEEECCCCccCc-ccC--C--CCCCCEEECcCCCCCCC--c-ccCCCCCCCEEECCCCcCcc---cCCC---c
Confidence 34899999999997762 221 1 27999999999999875 5 58999999999999998876 4433 2
Q ss_pred CcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccE
Q 039778 148 PSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEV 227 (459)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 227 (459)
++|++|++++|.+.... .+..+++|++|++++|.+.+ .|.. .++|++|++++|.+. .++ .+..+++|+.
T Consensus 173 ~~L~~L~L~~n~l~~l~----~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp--~~~~l~~L~~ 241 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEELP----ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP--ELQNLPFLTT 241 (454)
T ss_dssp TTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC--CCTTCTTCCE
T ss_pred ccccEEECcCCcCCcCc----cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc--ccCCCCCCCE
Confidence 58999999999987642 37889999999999998875 3322 368999999999887 554 3789999999
Q ss_pred EEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCc
Q 039778 228 LLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNA 307 (459)
Q Consensus 228 L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 307 (459)
|++++|.+.... ...++|++|++++|.+.+ +|.. +++|+.|++++|.
T Consensus 242 L~l~~N~l~~l~----------------------------~~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 242 IYADNNLLKTLP----------------------------DLPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENI 288 (454)
T ss_dssp EECCSSCCSSCC----------------------------SCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSC
T ss_pred EECCCCcCCccc----------------------------ccccccCEEECCCCcccc-cCcc----cCcCCEEECcCCc
Confidence 999998765210 123678889998888873 5542 4788999999888
Q ss_pred CCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcc
Q 039778 308 FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPE 387 (459)
Q Consensus 308 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 387 (459)
+.+... ..++|+.|++++|.+. .++. ..++|++|++++|++.+ .+.. +++|++|++++|.+.. +|.
T Consensus 289 l~~l~~----~~~~L~~L~l~~N~l~-~i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~ 354 (454)
T 1jl5_A 289 FSGLSE----LPPNLYYLNASSNEIR-SLCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE 354 (454)
T ss_dssp CSEESC----CCTTCCEEECCSSCCS-EECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC
T ss_pred cCcccC----cCCcCCEEECcCCcCC-cccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc
Confidence 764211 1258889999998887 3332 13588999999988875 3332 5789999999998874 444
Q ss_pred cccccCCCcEEEcccccccC--CCcccccCc-------------ccccEEEcCCCcccC--CCchhhcCCCcccEEeccC
Q 039778 388 SLSNCSSLQGLYISDNDITG--SIPTWIGNI-------------SFLDAIIMPDNHLEG--PIPSEFCQLDYLEILDLSK 450 (459)
Q Consensus 388 ~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~ 450 (459)
.+++|++|++++|++.+ .+|..+..+ ++|+.|++++|.+.+ .+|. +++.|.+++
T Consensus 355 ---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~ 425 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNS 425 (454)
T ss_dssp ---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------------------
T ss_pred ---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcC
Confidence 46789999999998887 677777766 789999999999985 4553 466778888
Q ss_pred CcccccCC
Q 039778 451 NNIAGSLP 458 (459)
Q Consensus 451 ~~~~~~~p 458 (459)
|.+.+.+|
T Consensus 426 ~~~~~~~~ 433 (454)
T 1jl5_A 426 ERVVDPYE 433 (454)
T ss_dssp --------
T ss_pred cccCCccc
Confidence 88887665
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-32 Score=250.18 Aligned_cols=309 Identities=22% Similarity=0.265 Sum_probs=186.3
Q ss_pred CccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcE
Q 039778 47 MNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRF 126 (459)
Q Consensus 47 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 126 (459)
+++++.|+++++.+.......+..+++|++|+++++.+. .++...+..+++|++|++++|.+.... +..+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCC-HHHhcCCCCCCE
Confidence 456666666666665444444566666666666666554 333345556666666666666555542 344555555555
Q ss_pred EecCCCccCCCCcccc-cccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEc
Q 039778 127 LDLSGLRIRDGSKVLH-SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHV 205 (459)
Q Consensus 127 L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 205 (459)
|++++|.+.. ++. .+..+++|++|++++|.+ .+..+..+..+++|++|++
T Consensus 122 L~L~~n~l~~---l~~~~~~~l~~L~~L~L~~n~l--------------------------~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 122 LVLERNDLSS---LPRGIFHNTPKLTTLSMSNNNL--------------------------ERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp EECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC--------------------------CBCCTTTTSSCTTCCEEEC
T ss_pred EECCCCccCc---CCHHHhcCCCCCcEEECCCCcc--------------------------CccChhhccCCCCCCEEEC
Confidence 5555555543 222 234455555555555544 4434444444555555555
Q ss_pred CCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCcccc
Q 039778 206 PDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQG 285 (459)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 285 (459)
+++.+.+ + .+..+++|+.+++++|.+.. ....++|++|++++|.+.
T Consensus 173 ~~n~l~~-~---~~~~l~~L~~L~l~~n~l~~-----------------------------~~~~~~L~~L~l~~n~l~- 218 (390)
T 3o6n_A 173 SSNRLTH-V---DLSLIPSLFHANVSYNLLST-----------------------------LAIPIAVEELDASHNSIN- 218 (390)
T ss_dssp CSSCCSB-C---CGGGCTTCSEEECCSSCCSE-----------------------------EECCSSCSEEECCSSCCC-
T ss_pred CCCcCCc-c---ccccccccceeecccccccc-----------------------------cCCCCcceEEECCCCeee-
Confidence 5554441 1 23444555555555543321 011234666666666655
Q ss_pred ccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccccccccc
Q 039778 286 HIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK 365 (459)
Q Consensus 286 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 365 (459)
.++.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+ ++...+..+++|++|++++|++.+ .+..+
T Consensus 219 ~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~ 291 (390)
T 3o6n_A 219 VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLVA-LNLYG 291 (390)
T ss_dssp EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-EESGGGTTCSSCCEEECCSSCCCE-EECSS
T ss_pred ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC-cChhHccccccCCEEECCCCcCcc-cCccc
Confidence 23322 146778888888877643 567778888888888888874 433444558888888888888774 34444
Q ss_pred ccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccC
Q 039778 366 NNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG 431 (459)
Q Consensus 366 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (459)
..+++|++|++++|++. ..+..+..+++|++|++++|++. .++ +..+++|+.|++++|++.+
T Consensus 292 ~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccc
Confidence 66788888888888777 45566777788888888888877 333 5567788888888888764
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.8e-32 Score=251.54 Aligned_cols=344 Identities=19% Similarity=0.173 Sum_probs=210.7
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccC
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMA 81 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (459)
++|++|+++++.+++. + .+..+++|++|++++|.+.+. .+..+++|++|++++|.++.. .++++++|++|++++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDT 115 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCC
Confidence 5677777777777754 2 566777777777777776664 377777777777777777643 267777777777777
Q ss_pred CcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778 82 TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA 161 (459)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 161 (459)
|.+.+ + .+..+++|++|++++|.+..+ .+..+++|++|++++|..... + .+..+++|+.|++++|.+.
T Consensus 116 N~l~~-l---~~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~--~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 116 NKLTK-L---DVSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITK--L--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp SCCSC-C---CCTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCC--C--CCTTCTTCCEEECCSSCCC
T ss_pred CcCCe-e---cCCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCCCcccc--c--ccccCCcCCEEECCCCccc
Confidence 76653 2 266777777777777777664 256677777777777743322 2 3566777777777777765
Q ss_pred ccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccc
Q 039778 162 KTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL 241 (459)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 241 (459)
... +..+++|++|++++|.+.+. .+..+++|++|++++|.+.+ ++ +..+++|+.|++++|.+....
T Consensus 184 ~l~-----l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 184 ELD-----VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp CCC-----CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--
T ss_pred eec-----cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC--
Confidence 532 55667777777777776654 25667777777777777763 32 566777777777777655211
Q ss_pred ccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCC
Q 039778 242 EPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNS 321 (459)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 321 (459)
...+++|+.|+++.+ +|+.+++++|.+....+ +..+++
T Consensus 250 -------------------------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~ 287 (457)
T 3bz5_A 250 -------------------------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRK 287 (457)
T ss_dssp -------------------------CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTT
T ss_pred -------------------------HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--cccccc
Confidence 112233333333321 22233333333222111 223344
Q ss_pred CcEEEccCCccccccchh-------HHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCC
Q 039778 322 LIYLDLSNNQLTGEIPEH-------LAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSS 394 (459)
Q Consensus 322 L~~L~l~~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 394 (459)
|+.|++++|...+.++.. .+.++++|++|++++|++++. .+..+++|++|++++|.+.+ ++.
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~ 356 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSS 356 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTT
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccc
Confidence 444444444332222211 123456777777777777753 26667777777777777663 245
Q ss_pred CcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCch
Q 039778 395 LQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS 435 (459)
Q Consensus 395 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 435 (459)
|+.|.+.+|.+.+. ..+.+|..+++++|++++.+|.
T Consensus 357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 66667777766543 2445667777777777766663
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=5.3e-31 Score=255.93 Aligned_cols=310 Identities=21% Similarity=0.255 Sum_probs=180.4
Q ss_pred CccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcE
Q 039778 47 MNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRF 126 (459)
Q Consensus 47 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 126 (459)
+++++.++++++.+....+..+..+++|++|+++++.+. .++...+..+++|++|++++|.+.... +..++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~------- 120 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQ------- 120 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCC-TTTTT-------
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCC-HHHHc-------
Confidence 345555555555554333334455555555555555444 233334444555555555555444432 23344
Q ss_pred EecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcC
Q 039778 127 LDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVP 206 (459)
Q Consensus 127 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 206 (459)
.+++|+.|++++|.+....+. .+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 121 -------------------~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 121 -------------------NVPLLTVLVLERNDLSSLPRG--IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp -------------------TCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred -------------------CCCCCCEEEeeCCCCCCCCHH--HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 444444444444444332221 23444555555555555555555555556666666666
Q ss_pred CCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccc
Q 039778 207 DNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGH 286 (459)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 286 (459)
+|.+.+ + .+..+++|+.+++++|.+.. .....+|+.|++++|.+. .
T Consensus 180 ~N~l~~-~---~~~~l~~L~~L~l~~n~l~~-----------------------------l~~~~~L~~L~ls~n~l~-~ 225 (597)
T 3oja_B 180 SNRLTH-V---DLSLIPSLFHANVSYNLLST-----------------------------LAIPIAVEELDASHNSIN-V 225 (597)
T ss_dssp TSCCSB-C---CGGGCTTCSEEECCSSCCSE-----------------------------EECCTTCSEEECCSSCCC-E
T ss_pred CCCCCC-c---ChhhhhhhhhhhcccCcccc-----------------------------ccCCchhheeeccCCccc-c
Confidence 665542 1 23445566666666554331 011235666666666655 2
Q ss_pred cchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccc
Q 039778 287 IPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKN 366 (459)
Q Consensus 287 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 366 (459)
++... .++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++ .+..+.
T Consensus 226 ~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 298 (597)
T 3oja_B 226 VRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA-LNLYGQ 298 (597)
T ss_dssp EECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECTTSCCCE-EECSSS
T ss_pred ccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH-HhcCccCCCEEECCCCCCCC-CCcccc
Confidence 33221 35777888888777643 5677778888888888888744343 34457888888888888775 344456
Q ss_pred cccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccC
Q 039778 367 NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG 431 (459)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (459)
.+++|++|++++|.+. .+|..+..+++|+.|++++|.+.. ++ +..+++|+.|++++|++.+
T Consensus 299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCC
Confidence 6778888888888777 456667777888888888888763 33 4566788888888887764
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=7.5e-31 Score=242.04 Aligned_cols=309 Identities=19% Similarity=0.201 Sum_probs=241.9
Q ss_pred CccccEEEeccccccCCc--ccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778 25 LSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL 102 (459)
Q Consensus 25 ~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 102 (459)
++++++|+++++.+...+ .+..+++|++|++++|.+....+..+..+++|++|++++|.+. ..+...+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEE
Confidence 589999999999877633 3788999999999999998777789999999999999999987 5555678999999999
Q ss_pred ECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcc
Q 039778 103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYID 182 (459)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 182 (459)
++++|.+..+. +..+..+++|++|++++|.+... .+..+..+++|++|++++|.+... .+..+++|+.|+++
T Consensus 123 ~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 123 VLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVS 194 (390)
T ss_dssp ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBC--CTTTTSSCTTCCEEECCSSCCSBC-----CGGGCTTCSEEECC
T ss_pred ECCCCccCcCC-HHHhcCCCCCcEEECCCCccCcc--ChhhccCCCCCCEEECCCCcCCcc-----ccccccccceeecc
Confidence 99999998763 34468999999999999988764 456688899999999999887543 24456677777777
Q ss_pred ccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCC
Q 039778 183 RNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGP 262 (459)
Q Consensus 183 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (459)
+|.+.. +...+.|++|+++++.+.. ++ ..
T Consensus 195 ~n~l~~-----~~~~~~L~~L~l~~n~l~~-~~---~~------------------------------------------ 223 (390)
T 3o6n_A 195 YNLLST-----LAIPIAVEELDASHNSINV-VR---GP------------------------------------------ 223 (390)
T ss_dssp SSCCSE-----EECCSSCSEEECCSSCCCE-EE---CC------------------------------------------
T ss_pred cccccc-----cCCCCcceEEECCCCeeee-cc---cc------------------------------------------
Confidence 765542 1223456666666655431 10 01
Q ss_pred cccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHh
Q 039778 263 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM 342 (459)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 342 (459)
..++|++|++++|.+.+. .. ...+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .++... .
T Consensus 224 ------~~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~ 292 (390)
T 3o6n_A 224 ------VNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG-Q 292 (390)
T ss_dssp ------CCSSCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSS-S
T ss_pred ------ccccccEEECCCCCCccc--HH-HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCccc-C
Confidence 124566666666666532 22 334899999999999999877888999999999999999998 555543 4
Q ss_pred cccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCC
Q 039778 343 GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGS 408 (459)
Q Consensus 343 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 408 (459)
.+++|++|++++|++. ..+..+..+++|++|++++|++... + +..+++|++|++++|++...
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 5899999999999998 4556678899999999999998854 2 66788999999999998743
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-33 Score=266.92 Aligned_cols=360 Identities=18% Similarity=0.132 Sum_probs=179.9
Q ss_pred CCCcEEEccCCcccccchhh-hcCCccccEEEeccccccCC------cccccCccCceEEcCCCCCCcccccccc-cCC-
Q 039778 2 SNLKFLDLSHNSFNNSVLSS-LAGLSSLKNLSLAYNRLEGS------INIEGMNMLESLDLSGNKFNSSILSSLT-ALS- 72 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~- 72 (459)
++|++|+++++.+++..+.. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.....+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56788888888877655554 66778888888888876542 2356677888888888777654443333 344
Q ss_pred ---CCcEEEccCCcceee---eccccccCCCCCcEEECcccccCCccCcc---c-ccCCCCCcEEecCCCccCCCC--cc
Q 039778 73 ---SLRKLNLMATGFKGT---FDVQELDSLSNLEELDMSDNEIDNLVVPK---D-YRGLRKLRFLDLSGLRIRDGS--KV 140 (459)
Q Consensus 73 ---~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~-~~~~~~L~~L~l~~~~~~~~~--~~ 140 (459)
+|++|++++|.+... .....+..+++|++|++++|.+.+..+.. . ....++|++|++++|.+.... .+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 577777777765521 11234566667777777666654332110 0 112345666666555544321 12
Q ss_pred cccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhcc-----CCCCCcEEEcCCCcCcCcC-
Q 039778 141 LHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLA-----NLTSLRVLHVPDNQLTGNL- 214 (459)
Q Consensus 141 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~- 214 (459)
+..+..+++|++|++++|.+ .+..+..+. ..++|++|++++|.+.+..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i--------------------------~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDI--------------------------NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBC--------------------------HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HHHHhhCCCCCEEECcCCCc--------------------------chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 23333445555555555443 322221111 1334555555555443210
Q ss_pred --CCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccc----cc
Q 039778 215 --SSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGH----IP 288 (459)
Q Consensus 215 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~ 288 (459)
....+..+++|+.|++++|.+...... .+. ......+++|++|++++|.+++. ++
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-~l~------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMA-ELC------------------PGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHH-HHH------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHH-HHH------------------HHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 012233444555555554433211000 000 00011235566666666655532 22
Q ss_pred hhhhhcCCCccEEEeecCcCCCCCCCccc-----CCCCCcEEEccCCccccccch---hHHhcccccceeeccccccccc
Q 039778 289 VEIGKVLPNLGFLSITFNAFNGSIPSSFG-----DMNSLIYLDLSNNQLTGEIPE---HLAMGCFNLEYLLLSNNSLQGQ 360 (459)
Q Consensus 289 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~i~~~ 360 (459)
..+. .+++|+.|++++|.+.+.....+. ..++|+.|++++|.+++.... ..+..+++|++|++++|.+++.
T Consensus 278 ~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 278 RVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 2222 256666666666655432211111 124666666666665533211 1122346666666666665543
Q ss_pred ccccccc-----ccCCceEEccCCcccC----CCcccccccCCCcEEEcccccccC
Q 039778 361 LFSKKNN-----LTKLKRLNLDGNHFIG----DIPESLSNCSSLQGLYISDNDITG 407 (459)
Q Consensus 361 ~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~ 407 (459)
.+..+.. .++|++|++++|.+.+ .++.++..+++|++|++++|++.+
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 3332221 4466666666666553 334445555666666666665553
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.4e-29 Score=246.02 Aligned_cols=307 Identities=19% Similarity=0.191 Sum_probs=216.1
Q ss_pred CccccEEEeccccccCCc--ccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778 25 LSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL 102 (459)
Q Consensus 25 ~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 102 (459)
+++++.++++++.+...+ .+..+++|++|++++|.+....+..|..+++|++|++++|.+. ..+...+..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence 567888888888766532 3677888888888888887666678888888888888888876 4555567888888888
Q ss_pred ECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcc
Q 039778 103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYID 182 (459)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 182 (459)
++++|.+..+. +..+..+++|++|++++|.+... .+..+..+++|+.|++++|.+... .+..+++|+.|+++
T Consensus 129 ~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 129 VLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVS 200 (597)
T ss_dssp ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBC--CTTTTTTCTTCCEEECTTSCCSBC-----CGGGCTTCSEEECC
T ss_pred EeeCCCCCCCC-HHHhccCCCCCEEEeeCCcCCCC--ChhhhhcCCcCcEEECcCCCCCCc-----Chhhhhhhhhhhcc
Confidence 88888887663 34467888888888888887664 555678888888888888887653 24557788888888
Q ss_pred ccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCC
Q 039778 183 RNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGP 262 (459)
Q Consensus 183 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (459)
+|.+.+ +...+.|++|++++|.+.. ++. ...++|+.|++++|.+...
T Consensus 201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~-~~~---~~~~~L~~L~L~~n~l~~~------------------------ 247 (597)
T 3oja_B 201 YNLLST-----LAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTDT------------------------ 247 (597)
T ss_dssp SSCCSE-----EECCTTCSEEECCSSCCCE-EEC---SCCSCCCEEECCSSCCCCC------------------------
T ss_pred cCcccc-----ccCCchhheeeccCCcccc-ccc---ccCCCCCEEECCCCCCCCC------------------------
Confidence 886653 2345678889988887752 211 2235788888887765421
Q ss_pred cccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHh
Q 039778 263 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM 342 (459)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 342 (459)
..+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+... +..+..+++|+.|++++|.+. .+|..+ .
T Consensus 248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~ 321 (597)
T 3oja_B 248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQ-P 321 (597)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGH-H
T ss_pred --hhhccCCCCCEEECCCCccCCCCHHHhcC-ccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCccc-c
Confidence 12234566777777777776554544443 77777777777777642 344455677777777777776 566554 3
Q ss_pred cccccceeeccccccccccccccccccCCceEEccCCccc
Q 039778 343 GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI 382 (459)
Q Consensus 343 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~ 382 (459)
.+++|++|++++|.+.... +..+++|++|++++|++.
T Consensus 322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence 4777777777777776432 455677777777777764
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.8e-33 Score=263.81 Aligned_cols=386 Identities=19% Similarity=0.163 Sum_probs=242.3
Q ss_pred cCceEEcCCCCCCcccccc-cccCCCCcEEEccCCcceeee---ccccccCCCCCcEEECcccccCCccCcccccCCC--
Q 039778 49 MLESLDLSGNKFNSSILSS-LTALSSLRKLNLMATGFKGTF---DVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLR-- 122 (459)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-- 122 (459)
+|++|+++++++++..... +..+++|++|++++|.+.... -...+..+++|++|++++|.+.+..+......++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4444555544444332222 444455555555554433110 0113344455555555555544322112222233
Q ss_pred --CCcEEecCCCccCCCC--cccccccCCCcccEEEccCCcccccccc--ccc-ccCcccccEEEcccccccccc----c
Q 039778 123 --KLRFLDLSGLRIRDGS--KVLHSIGSFPSLKTLYLKSNNFAKTVTT--TQG-LCELVHLQDLYIDRNDFIGSL----P 191 (459)
Q Consensus 123 --~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~~----~ 191 (459)
+|++|++++|.+.+.. .++..+..+++|++|++++|.+...... ... ....++|++|++++|.+.+.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 4666666666554321 2455666777777777777765432111 001 122456888888888776533 4
Q ss_pred hhccCCCCCcEEEcCCCcCcCcCCCCcc-----cCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccC
Q 039778 192 WCLANLTSLRVLHVPDNQLTGNLSSSPL-----MHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLP 266 (459)
Q Consensus 192 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (459)
..+..+++|++|++++|.+.+.. ...+ ...++|+.|++++|.+...... .+ ...
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l-------------------~~~ 222 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAG-VRVLCQGLKDSPCQLEALKLESCGVTSDNCR-DL-------------------CGI 222 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHH-HHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-HH-------------------HHH
T ss_pred HHHhhCCCCCEEECcCCCcchHH-HHHHHHHHhcCCCCceEEEccCCCCcHHHHH-HH-------------------HHH
Confidence 55667899999999999876322 1112 1356999999999876522100 00 112
Q ss_pred cCCCCCccEEEeccCccccccch----hhhhcCCCccEEEeecCcCCCC----CCCcccCCCCCcEEEccCCccccccch
Q 039778 267 TRSRKNIIALDISYNKLQGHIPV----EIGKVLPNLGFLSITFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPE 338 (459)
Q Consensus 267 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~ 338 (459)
+..+++|++|++++|.+.+.... .+...+++|+.|++++|.++.. .+..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 33568899999999988754332 2222478999999999988754 345566789999999999998755444
Q ss_pred hHHhc----ccccceeeccccccccc----cccccccccCCceEEccCCcccCCCcccccc-----cCCCcEEEcccccc
Q 039778 339 HLAMG----CFNLEYLLLSNNSLQGQ----LFSKKNNLTKLKRLNLDGNHFIGDIPESLSN-----CSSLQGLYISDNDI 405 (459)
Q Consensus 339 ~~~~~----~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~ 405 (459)
.+... .++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 44332 36999999999998865 3455667799999999999987665544432 67999999999999
Q ss_pred cC----CCcccccCcccccEEEcCCCcccCCCchh----hc-CCCcccEEeccCCcccc
Q 039778 406 TG----SIPTWIGNISFLDAIIMPDNHLEGPIPSE----FC-QLDYLEILDLSKNNIAG 455 (459)
Q Consensus 406 ~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~~~ 455 (459)
.+ .++..+..+++|+.|++++|++.+..... +. ...+|+.|.+.++.+..
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 86 67778888999999999999987542222 21 23467777777776553
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=5.3e-32 Score=264.17 Aligned_cols=429 Identities=12% Similarity=0.045 Sum_probs=250.5
Q ss_pred cchhhhcCCccccEEEeccccccC--------Ccc---------cccCccCceEEcCCCCCCccccccccc-CCC-CcEE
Q 039778 17 SVLSSLAGLSSLKNLSLAYNRLEG--------SIN---------IEGMNMLESLDLSGNKFNSSILSSLTA-LSS-LRKL 77 (459)
Q Consensus 17 ~~~~~~~~~~~L~~L~l~~~~~~~--------~~~---------~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L 77 (459)
.....+.++++|++|+++++.... ... ...+++|++|++++|.+++.....+.. +++ |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 334455667778888887653211 000 126778888888888776666655654 444 8888
Q ss_pred EccCCcceeeeccc-cccCCCCCcEEECcccccCCcc---CcccccCCCCCcEEecCCCccCCC--CcccccccCCCccc
Q 039778 78 NLMATGFKGTFDVQ-ELDSLSNLEELDMSDNEIDNLV---VPKDYRGLRKLRFLDLSGLRIRDG--SKVLHSIGSFPSLK 151 (459)
Q Consensus 78 ~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~ 151 (459)
++.+|......... ....+++|++|++++|.+.+.. ++.....+++|++|+++++.+... ..++..+.++++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 88777532111111 1235788888888888765542 123455677888888887776521 23444556778888
Q ss_pred EEEccCCcccccccccccccCcccccEEEccccccc---cccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEE
Q 039778 152 TLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFI---GSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVL 228 (459)
Q Consensus 152 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 228 (459)
+|++++|.+.... ..+..+++|++|+++..... ...+..+..+++|+.++++++... .+ +..+..+++|+.|
T Consensus 224 ~L~L~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l-~~~~~~~~~L~~L 298 (592)
T 3ogk_B 224 SVKVGDFEILELV---GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EM-PILFPFAAQIRKL 298 (592)
T ss_dssp EEECSSCBGGGGH---HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TG-GGGGGGGGGCCEE
T ss_pred EEeccCccHHHHH---HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HH-HHHHhhcCCCcEE
Confidence 8888887665432 24666777888887653221 122334556677777777764321 22 3455667778888
Q ss_pred EeecceeeeecccccccccCCceeeecCccc-cCCcccCcCCCCCccEEEecc-----------CccccccchhhhhcCC
Q 039778 229 LLSNNHFQIPISLEPFFNYSKLKIFHANNSL-SGPFRLPTRSRKNIIALDISY-----------NKLQGHIPVEIGKVLP 296 (459)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~ 296 (459)
++++|.+........+..+++|+.+...+.. ..........+++|++|+++. +.+++.....+...++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 8877764432222223444555554432111 111112224567788888873 3444333333444577
Q ss_pred CccEEEeecCcCCCCCCCcccC-CCCCcEEEcc----CCccccc----cchhHHhcccccceeeccccc--ccccccccc
Q 039778 297 NLGFLSITFNAFNGSIPSSFGD-MNSLIYLDLS----NNQLTGE----IPEHLAMGCFNLEYLLLSNNS--LQGQLFSKK 365 (459)
Q Consensus 297 ~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~----~~~~~~~~~~~L~~L~l~~~~--i~~~~~~~~ 365 (459)
+|+.|++..+.+++.....+.. +++|+.|++. .+.+++. ....++.++++|++|++++|. +++..+..+
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 8888888777666544444443 6778888875 3455531 122334557788888886543 444433333
Q ss_pred c-cccCCceEEccCCcccCCC-cccccccCCCcEEEcccccccCCC-cccccCcccccEEEcCCCcccCCCchhhc-CCC
Q 039778 366 N-NLTKLKRLNLDGNHFIGDI-PESLSNCSSLQGLYISDNDITGSI-PTWIGNISFLDAIIMPDNHLEGPIPSEFC-QLD 441 (459)
Q Consensus 366 ~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~ 441 (459)
. .+++|++|++++|++++.. +..+..+++|++|++++|++++.. +.....+++|+.|+|++|++++.....+. .+|
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p 538 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARP 538 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCT
T ss_pred HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCC
Confidence 3 3677888888887766432 333456777888888888765442 33344677888888888887755444343 556
Q ss_pred cccEEeccC
Q 039778 442 YLEILDLSK 450 (459)
Q Consensus 442 ~L~~L~l~~ 450 (459)
.+....+..
T Consensus 539 ~l~~~~~~~ 547 (592)
T 3ogk_B 539 YWNIELIPS 547 (592)
T ss_dssp TEEEEEECC
T ss_pred CcEEEEecC
Confidence 665554443
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.4e-31 Score=259.50 Aligned_cols=422 Identities=15% Similarity=0.106 Sum_probs=275.8
Q ss_pred CCCCcEEEccCCcc-cc--------------cchhhhcCCccccEEEeccccccCC--ccccc-Ccc-CceEEcCCCC-C
Q 039778 1 LSNLKFLDLSHNSF-NN--------------SVLSSLAGLSSLKNLSLAYNRLEGS--INIEG-MNM-LESLDLSGNK-F 60 (459)
Q Consensus 1 ~~~L~~L~l~~~~~-~~--------------~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~-l~~-L~~L~l~~~~-~ 60 (459)
+++|++|+++++.. .+ .....+..+++|++|+++++.+.+. ..+.. +++ |++|++++|. +
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 57788888877532 10 1112223678889999888866542 22333 444 8888888876 3
Q ss_pred Cccc-ccccccCCCCcEEEccCCcceeee---ccccccCCCCCcEEECcccccCCc---cCcccccCCCCCcEEecCCCc
Q 039778 61 NSSI-LSSLTALSSLRKLNLMATGFKGTF---DVQELDSLSNLEELDMSDNEIDNL---VVPKDYRGLRKLRFLDLSGLR 133 (459)
Q Consensus 61 ~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~ 133 (459)
+... .....+|++|++|++++|.+.+.. -......+++|++|+++++.+... .++..+..+++|++|+++++.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 2222 223347888888888888764221 011234578888888888877632 123445678888888888877
Q ss_pred cCCCCcccccccCCCcccEEEccCCccc-ccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcC
Q 039778 134 IRDGSKVLHSIGSFPSLKTLYLKSNNFA-KTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG 212 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 212 (459)
+.. ++..+..+++|++|++++.... ........+..+++|+.+++.++. ....+..+..+++|++|++++|.+.+
T Consensus 232 ~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 232 ILE---LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp GGG---GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred HHH---HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCH
Confidence 655 6667778888888888753221 111222345667788888887653 23455666677888888888887553
Q ss_pred cCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc------------ccc-CCcccCcCCCCCccEEEec
Q 039778 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN------------SLS-GPFRLPTRSRKNIIALDIS 279 (459)
Q Consensus 213 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~-~~~~~~~~~~~~L~~L~l~ 279 (459)
......+..+++|+.|++.++ +...........+++|+.+...+ ... .........+++|++|++.
T Consensus 308 ~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred HHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence 332234567888888888733 22111112223445555554331 111 1111123458999999998
Q ss_pred cCccccccchhhhhcCCCccEEEeec----CcCCCC-----CCCcccCCCCCcEEEccCCc--cccccchhHHhcccccc
Q 039778 280 YNKLQGHIPVEIGKVLPNLGFLSITF----NAFNGS-----IPSSFGDMNSLIYLDLSNNQ--LTGEIPEHLAMGCFNLE 348 (459)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~L~~L~L~~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~ 348 (459)
.+.+++..+..+...+++|+.|++++ +.+++. ....+.++++|+.|+++.|. +++.....+...+++|+
T Consensus 387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence 88888777777776799999999974 344432 12235678999999998654 67666777777799999
Q ss_pred eeecccccccccc-ccccccccCCceEEccCCcccCCCc-ccccccCCCcEEEcccccccCCCccccc-CcccccEEEcC
Q 039778 349 YLLLSNNSLQGQL-FSKKNNLTKLKRLNLDGNHFIGDIP-ESLSNCSSLQGLYISDNDITGSIPTWIG-NISFLDAIIMP 425 (459)
Q Consensus 349 ~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~ 425 (459)
+|++++|++++.. +..+..+++|++|++++|++++... ..+..+++|++|++++|++++.....+. .++.+....+.
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 9999999988643 3445778999999999999764433 3346789999999999998866444443 56777766666
Q ss_pred CC
Q 039778 426 DN 427 (459)
Q Consensus 426 ~~ 427 (459)
..
T Consensus 547 ~~ 548 (592)
T 3ogk_B 547 SR 548 (592)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.3e-27 Score=215.14 Aligned_cols=153 Identities=22% Similarity=0.273 Sum_probs=101.4
Q ss_pred CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL 374 (459)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 374 (459)
+++|+.|++++|.+... +..+. ++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 170 l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 170 MKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp CTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred CCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 44455555555544422 11111 56777777777776 3433344457778888888777776666667777888888
Q ss_pred EccCCcccCCCcccccccCCCcEEEcccccccCCCcccccC------cccccEEEcCCCcccC--CCchhhcCCCcccEE
Q 039778 375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGN------ISFLDAIIMPDNHLEG--PIPSEFCQLDYLEIL 446 (459)
Q Consensus 375 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L 446 (459)
++++|.+. .+|.++..+++|++|++++|++.+..+..+.. .++++.+++++|.+.. ..|..+..++.++.+
T Consensus 246 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324 (330)
T ss_dssp ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred ECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEE
Confidence 88888777 56667777888888888888887555445532 3678888999888753 456778888889999
Q ss_pred eccCCc
Q 039778 447 DLSKNN 452 (459)
Q Consensus 447 ~l~~~~ 452 (459)
++++|+
T Consensus 325 ~L~~N~ 330 (330)
T 1xku_A 325 QLGNYK 330 (330)
T ss_dssp EC----
T ss_pred EecccC
Confidence 998885
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=6.1e-28 Score=217.38 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=86.7
Q ss_pred CCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEE
Q 039778 320 NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLY 399 (459)
Q Consensus 320 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 399 (459)
++|++|++++|.+. .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 193 ~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 193 ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence 45666666666665 333333445667777777777776655556677777777777777776 5566677777777888
Q ss_pred cccccccCCCcccccC------cccccEEEcCCCccc--CCCchhhcCCCcccEEeccCCc
Q 039778 400 ISDNDITGSIPTWIGN------ISFLDAIIMPDNHLE--GPIPSEFCQLDYLEILDLSKNN 452 (459)
Q Consensus 400 l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 452 (459)
+++|++.+..+..+.. .++|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8777777544444443 356788888888776 4566777788888888888774
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.3e-27 Score=215.08 Aligned_cols=270 Identities=18% Similarity=0.251 Sum_probs=154.6
Q ss_pred CCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccc
Q 039778 97 SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176 (459)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (459)
+++++|+++++.+.... +..+..+++|++|++++|.+... .+..+..+++|++|++++|.+...... + .++|
T Consensus 52 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~l~~~---~--~~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKI--SPGAFAPLVKLERLYLSKNQLKELPEK---M--PKTL 123 (330)
T ss_dssp TTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSSCCSBCCSS---C--CTTC
T ss_pred CCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCee--CHHHhcCCCCCCEEECCCCcCCccChh---h--cccc
Confidence 45555566555555542 23455566666666666655542 345556666666666666665433222 1 1567
Q ss_pred cEEEccccccccccchhccCCCCCcEEEcCCCcCcC-cCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeec
Q 039778 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG-NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHA 255 (459)
Q Consensus 177 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (459)
++|++++|.+.+..+..+..+++|++|+++++.+.. ......+..+++|+.|++++|.+.
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~------------------- 184 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT------------------- 184 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-------------------
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-------------------
Confidence 777777777666666667777777777777776642 123344556666666666665433
Q ss_pred CccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc
Q 039778 256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335 (459)
Q Consensus 256 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 335 (459)
.+|... .++|+.|++++|.+....+..+..+++|+.|++++|.+. .
T Consensus 185 ------------------------------~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~ 230 (330)
T 1xku_A 185 ------------------------------TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-A 230 (330)
T ss_dssp ------------------------------SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-E
T ss_pred ------------------------------cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-e
Confidence 122111 144555555555554444455556666666666666665 3
Q ss_pred cchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCccccc------ccCCCcEEEcccccccC--
Q 039778 336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLS------NCSSLQGLYISDNDITG-- 407 (459)
Q Consensus 336 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~-- 407 (459)
++...+..+++|++|++++|++. ..+..+..+++|++|++++|++.+..+..|. ...+++.|++.+|++..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 33333444666677777666666 4445566667777777777776655444442 23567777777777653
Q ss_pred CCcccccCcccccEEEcCCCc
Q 039778 408 SIPTWIGNISFLDAIIMPDNH 428 (459)
Q Consensus 408 ~~~~~~~~~~~L~~L~l~~~~ 428 (459)
..|..+..+++++.++|++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 345566677777777777763
No 48
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=4.3e-31 Score=257.92 Aligned_cols=136 Identities=19% Similarity=0.177 Sum_probs=67.3
Q ss_pred cCccCceEEcCCCCCCcccccccc-cCCCCcEEEccCCcceeeeccc-cccCCCCCcEEECcccccCCcc---CcccccC
Q 039778 46 GMNMLESLDLSGNKFNSSILSSLT-ALSSLRKLNLMATGFKGTFDVQ-ELDSLSNLEELDMSDNEIDNLV---VPKDYRG 120 (459)
Q Consensus 46 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~ 120 (459)
.+++|++|++++|.+++.....+. .+++|++|++.+|...+..... ....+++|++|++++|.+.+.. ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456666666666666555555554 5666666666666322221111 2235666666666666654432 1122235
Q ss_pred CCCCcEEecCCCcc-CCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccc
Q 039778 121 LRKLRFLDLSGLRI-RDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDR 183 (459)
Q Consensus 121 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 183 (459)
+++|++|+++++.. .....+...+.++++|++|++++|..... ....+..+++|++|+++.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHHHHHCTTCSEEECSB
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHHHhcCCcceEccccc
Confidence 55666666666540 00011222233456666666666522111 112344455666665443
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2e-27 Score=213.97 Aligned_cols=290 Identities=19% Similarity=0.200 Sum_probs=147.3
Q ss_pred cccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcc
Q 039778 27 SLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD 106 (459)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 106 (459)
+++.++++++.+...+. .-.++|++|++++|.+....+..+.++++|++|++++|.+. .+....+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCC
Confidence 45566665555443211 11245566666666555444445555666666666555554 33333555555555555555
Q ss_pred cccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccccc
Q 039778 107 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDF 186 (459)
Q Consensus 107 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 186 (459)
|.+..+ +..+. ++|++|++++|.+... .+..+..+++|+.|++++|.+...
T Consensus 112 n~l~~l--~~~~~--~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~----------------------- 162 (332)
T 2ft3_A 112 NHLVEI--PPNLP--SSLVELRIHDNRIRKV--PKGVFSGLRNMNCIEMGGNPLENS----------------------- 162 (332)
T ss_dssp SCCCSC--CSSCC--TTCCEEECCSSCCCCC--CSGGGSSCSSCCEEECCSCCCBGG-----------------------
T ss_pred CcCCcc--Ccccc--ccCCEEECCCCccCcc--CHhHhCCCccCCEEECCCCccccC-----------------------
Confidence 555543 22222 4555555555554432 222344455555555554444221
Q ss_pred ccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccC
Q 039778 187 IGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLP 266 (459)
Q Consensus 187 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (459)
+..+..+..+ +|++|+++++.+. .++... .++|+.|++++|.+.
T Consensus 163 -~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~------------------------------ 206 (332)
T 2ft3_A 163 -GFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQ------------------------------ 206 (332)
T ss_dssp -GSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCC------------------------------
T ss_pred -CCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCC------------------------------
Confidence 1333344444 5666666666554 222111 134444444444322
Q ss_pred cCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccc
Q 039778 267 TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN 346 (459)
Q Consensus 267 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 346 (459)
.++...+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+ ..+++
T Consensus 207 -------------------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~ 265 (332)
T 2ft3_A 207 -------------------AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKL 265 (332)
T ss_dssp -------------------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG-GGCTT
T ss_pred -------------------ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh-hcCcc
Confidence 111111112445555555555555444445556666666666666665 555543 34666
Q ss_pred cceeecccccccccccccccc------ccCCceEEccCCccc--CCCcccccccCCCcEEEccccc
Q 039778 347 LEYLLLSNNSLQGQLFSKKNN------LTKLKRLNLDGNHFI--GDIPESLSNCSSLQGLYISDND 404 (459)
Q Consensus 347 L~~L~l~~~~i~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 404 (459)
|++|++++|+++...+..|.. .+.|+.+++.+|++. ...+.++..+++|+.+++++|.
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 666666666666544444432 356778888888765 4566677777888888887764
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.7e-28 Score=218.51 Aligned_cols=254 Identities=27% Similarity=0.440 Sum_probs=177.4
Q ss_pred cccEEEcccccccc--ccchhccCCCCCcEEEcCC-CcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCce
Q 039778 175 HLQDLYIDRNDFIG--SLPWCLANLTSLRVLHVPD-NQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLK 251 (459)
Q Consensus 175 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 251 (459)
+++.|+++++.+.+ ..|..+..+++|++|++++ +.+.+.+ +..+..+++|+.|++++|.+.....
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p----------- 118 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIP----------- 118 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence 34444444444444 3444444555555555552 4443222 2334455555555555544431111
Q ss_pred eeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCC-CCcEEEccCC
Q 039778 252 IFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMN-SLIYLDLSNN 330 (459)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-~L~~L~l~~~ 330 (459)
..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..+..+..++ .|+.|++++|
T Consensus 119 -------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 119 -------------DFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp -------------GGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred -------------HHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 11233455666666666665555655544 78888888888888766777777777 8999999999
Q ss_pred ccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCc
Q 039778 331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP 410 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 410 (459)
.+.+.++..+. .++ |++|++++|.+.+..+..+..+++|++|++++|.+....+. +..+++|++|++++|.+.+.+|
T Consensus 185 ~l~~~~~~~~~-~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 185 RLTGKIPPTFA-NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp EEEEECCGGGG-GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC
T ss_pred eeeccCChHHh-CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC
Confidence 88866666554 355 99999999999888888888899999999999998865554 7778899999999999988889
Q ss_pred ccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778 411 TWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 411 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
..+..+++|+.|++++|.+++.+|.. ..+++|+.+++++|+..+..|
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 88999999999999999999888875 788999999999998544433
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=3.1e-30 Score=251.86 Aligned_cols=419 Identities=13% Similarity=0.113 Sum_probs=228.8
Q ss_pred CCCCcEEEccCCc-ccccc--------------hhhhcCCccccEEEeccccccCC--cccc-cCccCceEEcCCC-CCC
Q 039778 1 LSNLKFLDLSHNS-FNNSV--------------LSSLAGLSSLKNLSLAYNRLEGS--INIE-GMNMLESLDLSGN-KFN 61 (459)
Q Consensus 1 ~~~L~~L~l~~~~-~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~~--~~~~-~l~~L~~L~l~~~-~~~ 61 (459)
+++|++|+++++. +.+.. ...+..+++|++|+++++.+.+. ..+. .+++|++|++++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 5789999999875 22111 12235688999999999986652 2343 6899999999999 455
Q ss_pred cc-cccccccCCCCcEEEccCCcceeeeccccc----cCCCCCcEEECcccc--cCCccCcccccCCCCCcEEecCCCcc
Q 039778 62 SS-ILSSLTALSSLRKLNLMATGFKGTFDVQEL----DSLSNLEELDMSDNE--IDNLVVPKDYRGLRKLRFLDLSGLRI 134 (459)
Q Consensus 62 ~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~ 134 (459)
+. ......+|++|++|++++|.+.+ .....+ ..+++|++|+++++. +....+......+++|++|+++++..
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDD-VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEEC-CCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCC-cchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 43 33344589999999999998653 222222 367899999999886 22222223345679999999998832
Q ss_pred CCCCcccccccCCCcccEEEccCCcccc----cccccccccCcccccEE-EccccccccccchhccCCCCCcEEEcCCCc
Q 039778 135 RDGSKVLHSIGSFPSLKTLYLKSNNFAK----TVTTTQGLCELVHLQDL-YIDRNDFIGSLPWCLANLTSLRVLHVPDNQ 209 (459)
Q Consensus 135 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 209 (459)
.. .++..+..+++|+.|++..+...- .......+..+++|+.+ .+.+... ...+..+..+++|++|++++|.
T Consensus 224 ~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 224 LE--KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp HH--HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCC
T ss_pred HH--HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCC
Confidence 22 266777889999999976653210 00111245677888888 3433221 2334444467889999999888
Q ss_pred CcCcCCCCcccCCCcccEEEeecceeeeeccccc-ccccCCceeeecCc----------ccc-CCcccCcCCCCCccEEE
Q 039778 210 LTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP-FFNYSKLKIFHANN----------SLS-GPFRLPTRSRKNIIALD 277 (459)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~----------~~~-~~~~~~~~~~~~L~~L~ 277 (459)
+.+......+..+++|+.|++.++ +. ...... ...+++|+.+.... ... .........+++|++|.
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 653332334567889999999887 32 111111 11233333332210 000 00000112245555555
Q ss_pred eccCccccccchhhhhcCCCccEEEee--c----CcCCCCC-----CCcccCCCCCcEEEccCCccccccchhHHhcccc
Q 039778 278 ISYNKLQGHIPVEIGKVLPNLGFLSIT--F----NAFNGSI-----PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN 346 (459)
Q Consensus 278 l~~~~~~~~~~~~~~~~~~~L~~L~L~--~----~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 346 (459)
+..+.+++.....+...+++|+.|+++ + +.++... ...+..+++|+.|++++ .+++.....+...+++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 555555444334443345556666665 2 1222110 01133445555555544 4443333333334555
Q ss_pred cceeecccccccccccccc-ccccCCceEEccCCcccCCCcc-cccccCCCcEEEcccccccCCCcccc-cCcccccEEE
Q 039778 347 LEYLLLSNNSLQGQLFSKK-NNLTKLKRLNLDGNHFIGDIPE-SLSNCSSLQGLYISDNDITGSIPTWI-GNISFLDAII 423 (459)
Q Consensus 347 L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~ 423 (459)
|++|++++|.+++..+..+ ..+++|++|++++|++++.... ....+++|++|++++|+++......+ ..+++++...
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 5555555555544333333 3455555555555555322222 22334555555555555532222222 2344444444
Q ss_pred cCC
Q 039778 424 MPD 426 (459)
Q Consensus 424 l~~ 426 (459)
+.+
T Consensus 538 ~~~ 540 (594)
T 2p1m_B 538 IDE 540 (594)
T ss_dssp ECS
T ss_pred ecC
Confidence 443
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4e-27 Score=209.58 Aligned_cols=233 Identities=23% Similarity=0.395 Sum_probs=204.9
Q ss_pred CCCcEEEcCCCcCcC--cCCCCcccCCCcccEEEeec-ceeeeecccccccccCCceeeecCccccCCcccCcCCCCCcc
Q 039778 198 TSLRVLHVPDNQLTG--NLSSSPLMHLTSIEVLLLSN-NHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNII 274 (459)
Q Consensus 198 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 274 (459)
.+++.|+++++.+.+ .+ +..+..+++|+.|++++ +.+.... ...+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~L~~~n~l~~~~------------------------p~~l~~l~~L~ 104 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGGINNLVGPI------------------------PPAIAKLTQLH 104 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC-CGGGGGCTTCSEEEEEEETTEESCC------------------------CGGGGGCTTCS
T ss_pred ceEEEEECCCCCccCCccc-ChhHhCCCCCCeeeCCCCCcccccC------------------------ChhHhcCCCCC
Confidence 579999999999886 45 46788999999999994 6655221 22345678999
Q ss_pred EEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccc-ccceeecc
Q 039778 275 ALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF-NLEYLLLS 353 (459)
Q Consensus 275 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~ 353 (459)
+|++++|.+.+.+|..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|..+.. ++ +|++|+++
T Consensus 105 ~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~ 182 (313)
T 1ogq_A 105 YLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTIS 182 (313)
T ss_dssp EEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECC
T ss_pred EEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECc
Confidence 9999999998778877665 999999999999999888899999999999999999998788877665 65 99999999
Q ss_pred ccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCC
Q 039778 354 NNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPI 433 (459)
Q Consensus 354 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 433 (459)
+|.+.+..+..+..++ |++|++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+.+
T Consensus 183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECC
T ss_pred CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcC
Confidence 9999988888888887 99999999999988899999999999999999999855554 788899999999999999899
Q ss_pred chhhcCCCcccEEeccCCcccccCCC
Q 039778 434 PSEFCQLDYLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 434 ~~~~~~~~~L~~L~l~~~~~~~~~p~ 459 (459)
|..+..+++|+.|++++|++++.+|+
T Consensus 261 p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ChHHhcCcCCCEEECcCCcccccCCC
Confidence 99999999999999999999999985
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.6e-26 Score=206.99 Aligned_cols=279 Identities=21% Similarity=0.211 Sum_probs=185.6
Q ss_pred CCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCccc
Q 039778 96 LSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVH 175 (459)
Q Consensus 96 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 175 (459)
|+.....+++++.+..+ |..+. ++|++|+++++.+... .+..+.++++|++|++++|.+....+. .+..+++
T Consensus 30 C~~~~~c~~~~~~l~~i--P~~~~--~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~ 101 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI--PSGLT--EAVKSLDLSNNRITYI--SNSDLQRCVNLQALVLTSNGINTIEED--SFSSLGS 101 (353)
T ss_dssp ECTTSEEECCSTTCSSC--CTTCC--TTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTSCCCEECTT--TTTTCTT
T ss_pred CCCCeEeeCCCCCcccc--ccccc--ccCcEEECCCCcCccc--CHHHhccCCCCCEEECCCCccCccCHh--hcCCCCC
Confidence 45555566677666665 43332 4777777777776542 223567777777777777776544332 3566777
Q ss_pred ccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCC-CcccCCCcccEEEeecceeeeecccccccccCCceeee
Q 039778 176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSS-SPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH 254 (459)
Q Consensus 176 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 254 (459)
|++|++++|.+.+..+..+..+++|++|++++|.+. .++. ..+..+++|+.|++++|..
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~------------------- 161 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT------------------- 161 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSS-------------------
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcc-------------------
Confidence 777777777777655555777778888888877766 3433 4556666666666666521
Q ss_pred cCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCcccc
Q 039778 255 ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG 334 (459)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 334 (459)
+. .++...+..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 162 ----------------------------~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~- 211 (353)
T 2z80_A 162 ----------------------------FT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI- 211 (353)
T ss_dssp ----------------------------CC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-
T ss_pred ----------------------------cc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-
Confidence 11 222222333677778888888777666777888889999999999886
Q ss_pred ccchhHHhcccccceeecccccccccccccc---ccccCCceEEccCCcccCC----CcccccccCCCcEEEcccccccC
Q 039778 335 EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK---NNLTKLKRLNLDGNHFIGD----IPESLSNCSSLQGLYISDNDITG 407 (459)
Q Consensus 335 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 407 (459)
.++...+..+++|+.|++++|.+.+..+..+ ...+.++.+++.++.+.+. +|.++..+++|++|++++|.+.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 7777777778999999999998876544332 2345677777777765532 4455667777777777777777
Q ss_pred CCccc-ccCcccccEEEcCCCcccCCC
Q 039778 408 SIPTW-IGNISFLDAIIMPDNHLEGPI 433 (459)
Q Consensus 408 ~~~~~-~~~~~~L~~L~l~~~~~~~~~ 433 (459)
.+|.. +..+++|+.|++++|++.+..
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 45544 467777777777777777543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=9.5e-26 Score=200.76 Aligned_cols=189 Identities=20% Similarity=0.174 Sum_probs=132.2
Q ss_pred CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778 270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349 (459)
Q Consensus 270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 349 (459)
+++|++|++++|.+.+..+......+++|+.|++++|.+....+..+..+++|++|++++|.+.+......+..+++|++
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 34555666666655532222333447888888888888877777778888888888888888874333334456888888
Q ss_pred eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcc-cccEEEcCCCc
Q 039778 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNIS-FLDAIIMPDNH 428 (459)
Q Consensus 350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 428 (459)
|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..++ +|+.|++++|.
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 88888888877777788888888888888888776666777888888888888888877777777774 88888888888
Q ss_pred ccCCCc-hh-hcCCCcccEEeccCCcccccCC
Q 039778 429 LEGPIP-SE-FCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 429 ~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~p 458 (459)
+.+.-. .. ..-+...+.+.+..+.+.+..|
T Consensus 260 ~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 260 FACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp EECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred eecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 874311 11 1122334445556666666655
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.9e-25 Score=209.76 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=60.8
Q ss_pred CCCccEEEeecCc-CCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCce
Q 039778 295 LPNLGFLSITFNA-FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR 373 (459)
Q Consensus 295 ~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 373 (459)
+++|+.|+++++. +.......+.++++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+..|..+++|++
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc--ccccccccEEECcCCcCcccCcccccCccCCCE
Confidence 4555555555432 22222233444555555555555544 2322 223444555555555444444444444445555
Q ss_pred EEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 374 LNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 374 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+|++|.+.
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 555555444444444444444555555555444333333444444445555444443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.2e-25 Score=208.65 Aligned_cols=136 Identities=21% Similarity=0.202 Sum_probs=76.4
Q ss_pred hhcCCCccEEEeecCcC-CCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccC
Q 039778 292 GKVLPNLGFLSITFNAF-NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTK 370 (459)
Q Consensus 292 ~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 370 (459)
+..+++|+.|+++++.. .......|.++++|+.|++++|.++ .++. +..+++|++|++++|.+.+..+..|..+++
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCcc
Confidence 33356666666666332 2223334556666666666666665 4442 233556666666666665555555555666
Q ss_pred CceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 371 LKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 371 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|+|++|.+.
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 666666666655555555555566666666666665444444555566666666666554
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=7e-26 Score=201.65 Aligned_cols=284 Identities=20% Similarity=0.226 Sum_probs=193.6
Q ss_pred cEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEE
Q 039778 100 EELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDL 179 (459)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 179 (459)
+.++++++.+..+ |..+ .+++++|+++++.+... -...+.++++|++|++++|.+.........+..+++|++|
T Consensus 10 ~~l~c~~~~l~~i--p~~~--~~~l~~L~L~~n~l~~i--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLTSV--PTGI--PSSATRLELESNKLQSL--PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCSSC--CSCC--CTTCCEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred CEEEcCCCCcccC--CCCC--CCCCCEEECCCCccCcc--CHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 4677777777666 3333 25788888888877652 2234567788888888877765332212234456667777
Q ss_pred EccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccc
Q 039778 180 YIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSL 259 (459)
Q Consensus 180 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (459)
++++|.+.. .+..+..+++|++|+++++.+.+......+..+++
T Consensus 84 ~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~----------------------------------- 127 (306)
T 2z66_A 84 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN----------------------------------- 127 (306)
T ss_dssp ECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT-----------------------------------
T ss_pred ECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC-----------------------------------
Confidence 777766553 33345566666666666665542221133444444
Q ss_pred cCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCC-CCCCcccCCCCCcEEEccCCccccccch
Q 039778 260 SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG-SIPSSFGDMNSLIYLDLSNNQLTGEIPE 338 (459)
Q Consensus 260 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 338 (459)
|++|++++|.+.+..+.. +..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+. .++.
T Consensus 128 -------------L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~ 192 (306)
T 2z66_A 128 -------------LIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192 (306)
T ss_dssp -------------CCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECT
T ss_pred -------------CCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC-CcCH
Confidence 445555555444333333 3348999999999999875 46778899999999999999998 4544
Q ss_pred hHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccC-CCcEEEcccccccCCCc--ccccC
Q 039778 339 HLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCS-SLQGLYISDNDITGSIP--TWIGN 415 (459)
Q Consensus 339 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~~ 415 (459)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..++ +|++|++++|++...-. ....-
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 4455699999999999999987777888999999999999999988888888884 89999999999874321 11222
Q ss_pred cccccEEEcCCCcccCCCchhhcCC
Q 039778 416 ISFLDAIIMPDNHLEGPIPSEFCQL 440 (459)
Q Consensus 416 ~~~L~~L~l~~~~~~~~~~~~~~~~ 440 (459)
+...+.+.+..+.+.+..|..+...
T Consensus 273 l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 273 IKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp HHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred HHhhhhhhccccccccCCchhhCCc
Confidence 3445555666777777777766543
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.9e-25 Score=197.89 Aligned_cols=133 Identities=21% Similarity=0.242 Sum_probs=85.7
Q ss_pred CCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcE
Q 039778 318 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQG 397 (459)
Q Consensus 318 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 397 (459)
++++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred cCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 3566666666666665 555443 346666666666666663 3344666666777777666666666666666666777
Q ss_pred EEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcc
Q 039778 398 LYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453 (459)
Q Consensus 398 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 453 (459)
|++++|++.+.+|..+..+++|+.|+|++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 77777666666666666667777777777766666676666777777776665544
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-26 Score=207.44 Aligned_cols=241 Identities=19% Similarity=0.150 Sum_probs=176.9
Q ss_pred cCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCc
Q 039778 171 CELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKL 250 (459)
Q Consensus 171 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 250 (459)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+....
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~l~----------- 96 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQELL----------- 96 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---EETTCTTCCEEECCSSEEEEEE-----------
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---hhhhcCCCCEEECcCCcccccc-----------
Confidence 34567777777777777666667777777888888777766322 2667777888888777665211
Q ss_pred eeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCC
Q 039778 251 KIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN 330 (459)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~ 330 (459)
..++|++|++++|.+.+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 97 ------------------~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 97 ------------------VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp ------------------ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred ------------------CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 125677888888777633222 2677888888888888766667777888888888888
Q ss_pred ccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCc
Q 039778 331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP 410 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 410 (459)
.+.+..+..+...+++|++|++++|.+++. .....+++|++|++++|.+.+. +..+..+++|++|++++|++. .+|
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~ 230 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIE 230 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EEC
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chh
Confidence 887545555555678888999988888754 2233478888999988888754 445778888999999988888 677
Q ss_pred ccccCcccccEEEcCCCccc-CCCchhhcCCCcccEEeccCC
Q 039778 411 TWIGNISFLDAIIMPDNHLE-GPIPSEFCQLDYLEILDLSKN 451 (459)
Q Consensus 411 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 451 (459)
..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++|
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 77888888999999988887 567777788888888888733
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.9e-25 Score=196.59 Aligned_cols=156 Identities=24% Similarity=0.272 Sum_probs=104.0
Q ss_pred CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL 374 (459)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 374 (459)
+++|+.|++++|.+.......+..+++|+.|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 566666666666666555555677777888888877776 5565555567788888888887777667777778888888
Q ss_pred EccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhc--CCCcccEEeccCCc
Q 039778 375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFC--QLDYLEILDLSKNN 452 (459)
Q Consensus 375 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 452 (459)
++++|.+.+..+..+..+++|++|++++|++....+. ..-...++.+..+.+.+.+..|..+. .+..++..++++|+
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 8888887766666677778888888888877633221 11123344445566666666776664 34556666666663
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=9.2e-25 Score=204.37 Aligned_cols=235 Identities=22% Similarity=0.322 Sum_probs=203.3
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
+++++|++++|.++...+..|.++++|++|++++|.+.+ ...|.++++|++|++++|+++......|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 578999999999998888999999999999999998775 457899999999999999998777778999999999999
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN 159 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (459)
++|.+. .++...+..+++|++|+++++.......+..+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---IP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS---CC-CCTTCSSCCEEECTTSC
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc---cc-ccCCCcccCEEECCCCc
Confidence 999987 56666889999999999998654443335678899999999999998876 33 47889999999999999
Q ss_pred ccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec
Q 039778 160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI 239 (459)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 239 (459)
+....+. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|++..+.
T Consensus 219 l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 219 LSAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCEECTT--TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred cCccChh--hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCccCCC
Confidence 8765443 5788999999999999999888888999999999999999988 566777889999999999999998777
Q ss_pred ccccc
Q 039778 240 SLEPF 244 (459)
Q Consensus 240 ~~~~~ 244 (459)
...++
T Consensus 296 ~l~~l 300 (440)
T 3zyj_A 296 DILWL 300 (440)
T ss_dssp TTHHH
T ss_pred CchHH
Confidence 65544
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.2e-24 Score=204.38 Aligned_cols=235 Identities=21% Similarity=0.285 Sum_probs=203.1
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (459)
+++++|++++|.+++..+..|.++++|++|++++|.+.+ ...|.++++|++|++++|.++......|.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 578999999999999989999999999999999998876 457889999999999999998777777999999999999
Q ss_pred cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc
Q 039778 80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN 159 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (459)
++|.+. .++...+..+++|++|+++++.......+..+..+++|++|++++|.+... ..+..+++|+.|++++|.
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM----PNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC----CCCTTCTTCCEEECTTSC
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc----ccccccccccEEECcCCc
Confidence 999987 666668899999999999986544433356788999999999999998763 347789999999999999
Q ss_pred ccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec
Q 039778 160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI 239 (459)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 239 (459)
+....+. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|++..+.
T Consensus 230 l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 230 FPEIRPG--SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CSEECGG--GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CcccCcc--cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcCCCC
Confidence 8765443 5788999999999999999888888999999999999999987 666677888999999999999998776
Q ss_pred ccccc
Q 039778 240 SLEPF 244 (459)
Q Consensus 240 ~~~~~ 244 (459)
...++
T Consensus 307 ~~~~l 311 (452)
T 3zyi_A 307 DILWL 311 (452)
T ss_dssp TTHHH
T ss_pred CchHH
Confidence 65543
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.3e-24 Score=195.78 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=51.2
Q ss_pred CccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcc---cCCCCCcEEEccCCccccc----cchhHHhcc
Q 039778 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSF---GDMNSLIYLDLSNNQLTGE----IPEHLAMGC 344 (459)
Q Consensus 272 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~ 344 (459)
+|++|++++|.+. .++......+++|+.|++++|.+.......+ ...+.++.++++++.+.+. ++.. +..+
T Consensus 199 ~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l 276 (353)
T 2z80_A 199 NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQI 276 (353)
T ss_dssp EEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH-HHTC
T ss_pred cCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH-Hhcc
Confidence 3444444444433 4444444446677777777776664332222 2234556666666555431 2221 2234
Q ss_pred cccceeeccccccccccccccccccCCceEEccCCccc
Q 039778 345 FNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI 382 (459)
Q Consensus 345 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~ 382 (459)
++|++|++++|+++......|..+++|++|++++|++.
T Consensus 277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 55555555555554322222344455555555555444
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3.4e-25 Score=194.95 Aligned_cols=163 Identities=22% Similarity=0.243 Sum_probs=127.9
Q ss_pred cCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCce
Q 039778 294 VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR 373 (459)
Q Consensus 294 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 373 (459)
.+++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 3677888888888877666777888899999999999887 666666667889999999999888766667888899999
Q ss_pred EEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcc
Q 039778 374 LNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453 (459)
Q Consensus 374 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 453 (459)
|++++|.+.+..+.++..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.-+. ......++.+..+.+.+
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~ 260 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEV 260 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCC
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCcc
Confidence 99999998877788888889999999999998866566788889999999999988743221 12224455556667777
Q ss_pred cccCC
Q 039778 454 AGSLP 458 (459)
Q Consensus 454 ~~~~p 458 (459)
.+..|
T Consensus 261 ~c~~p 265 (285)
T 1ozn_A 261 PCSLP 265 (285)
T ss_dssp BEEES
T ss_pred ccCCc
Confidence 76666
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.5e-24 Score=194.14 Aligned_cols=224 Identities=20% Similarity=0.230 Sum_probs=185.1
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEcc
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLM 80 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (459)
+++++|+++++.++ ..+..+..+++|++|++++|.+.. +..+..+++|++|++++|.+. ..+..+.++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 57899999999988 556667779999999999998775 345888999999999999987 678889999999999999
Q ss_pred CCcceeeecccc--------ccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccE
Q 039778 81 ATGFKGTFDVQE--------LDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT 152 (459)
Q Consensus 81 ~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 152 (459)
+|...+.++... +..+++|++|++++|.+..+ +..+..+++|++|++++|.+.. ++..+..+++|+.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~N~l~~---l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEE 233 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCEEEEESSCCCC---CCGGGGGCTTCCE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCEEEccCCCCCc---CchhhccCCCCCE
Confidence 887765554311 33489999999999988855 7788999999999999998875 6667888999999
Q ss_pred EEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeec
Q 039778 153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSN 232 (459)
Q Consensus 153 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (459)
|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+ +..+..+++++.+.+..
T Consensus 234 L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i-P~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 234 LDLRGCTALRNYPP--IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCIILVPP 310 (328)
T ss_dssp EECTTCTTCCBCCC--CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC-CGGGGGSCTTCEEECCG
T ss_pred EECcCCcchhhhHH--HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc-cHHHhhccCceEEeCCH
Confidence 99999887665443 5778889999999999888888888888999999999999888666 56788899999998876
Q ss_pred cee
Q 039778 233 NHF 235 (459)
Q Consensus 233 ~~~ 235 (459)
+.+
T Consensus 311 ~~~ 313 (328)
T 4fcg_A 311 HLQ 313 (328)
T ss_dssp GGS
T ss_pred HHH
Confidence 543
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.8e-23 Score=201.03 Aligned_cols=266 Identities=22% Similarity=0.211 Sum_probs=165.5
Q ss_pred CCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCccccc
Q 039778 98 NLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177 (459)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 177 (459)
++++|+++++.+..+ |..+. ++|++|++++|.+.. ++. .+++|++|++++|.+..... .+++|+
T Consensus 41 ~l~~L~ls~n~L~~l--p~~l~--~~L~~L~L~~N~l~~---lp~---~l~~L~~L~Ls~N~l~~lp~------~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGESGLTTL--PDCLP--AHITTLVIPDNNLTS---LPA---LPPELRTLEVSGNQLTSLPV------LPPGLL 104 (622)
T ss_dssp CCCEEECCSSCCSCC--CSCCC--TTCSEEEECSCCCSC---CCC---CCTTCCEEEECSCCCSCCCC------CCTTCC
T ss_pred CCcEEEecCCCcCcc--ChhhC--CCCcEEEecCCCCCC---CCC---cCCCCCEEEcCCCcCCcCCC------CCCCCC
Confidence 355555555555543 33222 455555555555543 222 34555666666555543221 345566
Q ss_pred EEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc
Q 039778 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN 257 (459)
Q Consensus 178 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (459)
+|++++|.+.+... .+++|++|++++|.+. .++. .+++|+.|++++|.+...
T Consensus 105 ~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l------------------- 156 (622)
T 3g06_A 105 ELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL------------------- 156 (622)
T ss_dssp EEEECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-------------------
T ss_pred EEECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-------------------
Confidence 66666665544222 3456666666666554 2321 235666666666644310
Q ss_pred cccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccc
Q 039778 258 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP 337 (459)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 337 (459)
...+.+|+.|++++|.+. .+| ..+++|+.|++++|.+.... . ..++|+.|++.+|.++ .++
T Consensus 157 ---------~~~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~-~l~ 217 (622)
T 3g06_A 157 ---------PALPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLT-SLP 217 (622)
T ss_dssp ---------CCCCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS-SCC
T ss_pred ---------CCccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCccc-ccC
Confidence 012345677777777766 455 23678888888888877432 2 2367888888888887 555
Q ss_pred hhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcc
Q 039778 338 EHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNIS 417 (459)
Q Consensus 338 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 417 (459)
. .+++|+.|++++|.+++ ++ ..+++|++|++++|.+.. +|. .+++|+.|++++|.+. .+|..+..++
T Consensus 218 ~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 218 A----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp C----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred C----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 4 25788888888888875 22 445788888888888774 444 4578888888888888 7788888888
Q ss_pred cccEEEcCCCcccCCCchhhcC
Q 039778 418 FLDAIIMPDNHLEGPIPSEFCQ 439 (459)
Q Consensus 418 ~L~~L~l~~~~~~~~~~~~~~~ 439 (459)
+|+.|+|++|.+.+..|..+..
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHHHh
Confidence 8888888888888766665543
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=3.5e-25 Score=197.24 Aligned_cols=179 Identities=21% Similarity=0.185 Sum_probs=138.9
Q ss_pred CCccEEEeccCccccccchhhhhc----CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCcccccc--chhH-Hhc
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKV----LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEI--PEHL-AMG 343 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~-~~~ 343 (459)
++|++|++++|.+.+. |..+... .++|++|++++|.+....+..+..+++|++|++++|.+.+.+ +..+ +..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 3444444444444433 4333321 388999999999998877788999999999999999876442 2222 356
Q ss_pred ccccceeeccccccccc---cccccccccCCceEEccCCcccCCCc-ccccccCCCcEEEcccccccCCCcccccCcccc
Q 039778 344 CFNLEYLLLSNNSLQGQ---LFSKKNNLTKLKRLNLDGNHFIGDIP-ESLSNCSSLQGLYISDNDITGSIPTWIGNISFL 419 (459)
Q Consensus 344 ~~~L~~L~l~~~~i~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 419 (459)
+++|++|++++|++.+. ....+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .+|..+. ++|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L 276 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL 276 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCc
Confidence 89999999999998842 22344677999999999999987664 45566799999999999998 7787766 899
Q ss_pred cEEEcCCCcccCCCchhhcCCCcccEEeccCCcccc
Q 039778 420 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 455 (459)
Q Consensus 420 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 455 (459)
+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus 277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999954 76 8899999999999999986
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.8e-25 Score=206.10 Aligned_cols=237 Identities=19% Similarity=0.159 Sum_probs=181.1
Q ss_pred cccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCcee
Q 039778 173 LVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKI 252 (459)
Q Consensus 173 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 252 (459)
+++|++|++++|.+.+..+..|..+++|++|++++|.+.+.. .+..+++|+.|++++|.+....
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~l~~l~~L~~L~Ls~N~l~~l~------------- 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQELL------------- 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE---ECTTCTTCCEEECCSSEEEEEE-------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc---ccccCCCCCEEEecCCcCCCCC-------------
Confidence 446777777777777666667777777777777777766332 1667777888888777665211
Q ss_pred eecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCcc
Q 039778 253 FHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332 (459)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 332 (459)
..++|++|++++|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 97 ----------------~~~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 97 ----------------VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp ----------------ECTTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred ----------------CCCCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence 115788888888877743332 267889999999988877777788889999999999999
Q ss_pred ccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCccc
Q 039778 333 TGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTW 412 (459)
Q Consensus 333 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 412 (459)
++..+..+...+++|++|++++|.+++. .....+++|++|++++|.+.+. +..+..+++|+.|++++|.+. .+|..
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 232 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKA 232 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTT
T ss_pred CCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchh
Confidence 8666666665689999999999998865 2334588999999999998854 445888899999999999988 57777
Q ss_pred ccCcccccEEEcCCCccc-CCCchhhcCCCcccEEecc
Q 039778 413 IGNISFLDAIIMPDNHLE-GPIPSEFCQLDYLEILDLS 449 (459)
Q Consensus 413 ~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 449 (459)
+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888899999999999887 4567778888888888876
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.2e-22 Score=195.31 Aligned_cols=151 Identities=20% Similarity=0.233 Sum_probs=69.3
Q ss_pred CceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEec
Q 039778 50 LESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDL 129 (459)
Q Consensus 50 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 129 (459)
+++|+++++.++ ..+..+. ++|++|++++|.+. .++. .+++|++|++++|.+..+ +. .+++|++|++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l--p~---~l~~L~~L~L 108 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL--PV---LPPGLLELSI 108 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC--CC---CCTTCCEEEE
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC--CC---CCCCCCEEEC
Confidence 445555555444 2232222 44555555554443 2221 345555555555555443 22 4455555555
Q ss_pred CCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCc
Q 039778 130 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQ 209 (459)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 209 (459)
++|.+.. ++. .+++|+.|++++|.+..... .+++|++|++++|.+.+. +. .+++|+.|++++|.
T Consensus 109 s~N~l~~---l~~---~l~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 109 FSNPLTH---LPA---LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp CSCCCCC---CCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSC
T ss_pred cCCcCCC---CCC---CCCCcCEEECCCCCCCcCCC------CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCC
Confidence 5555443 222 34455555555555443221 124555555555554432 11 23455556665555
Q ss_pred CcCcCCCCcccCCCcccEEEeecce
Q 039778 210 LTGNLSSSPLMHLTSIEVLLLSNNH 234 (459)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~ 234 (459)
+. .++ ..+++|+.|++++|.
T Consensus 173 l~-~l~----~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 173 LT-SLP----MLPSGLQELSVSDNQ 192 (622)
T ss_dssp CS-CCC----CCCTTCCEEECCSSC
T ss_pred CC-CCc----ccCCCCcEEECCCCC
Confidence 54 221 234455555555543
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=3.4e-24 Score=191.28 Aligned_cols=238 Identities=21% Similarity=0.188 Sum_probs=192.9
Q ss_pred ccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeec
Q 039778 176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHA 255 (459)
Q Consensus 176 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (459)
++..+++.+.+.......+..+++|++|++++|.+. .+.+..+..+++|+.|++++|.+.....
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------- 75 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--------------- 75 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE---------------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh---------------
Confidence 455556666655555555666789999999999987 4545678999999999999998753221
Q ss_pred CccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc
Q 039778 256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335 (459)
Q Consensus 256 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 335 (459)
+..+++|++|++++|.+.+ ++ ..++|+.|++++|.+...... .+++|+.|++++|.++ .
T Consensus 76 -----------~~~l~~L~~L~Ls~n~l~~-l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~ 134 (317)
T 3o53_A 76 -----------LESLSTLRTLDLNNNYVQE-LL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-M 134 (317)
T ss_dssp -----------ETTCTTCCEEECCSSEEEE-EE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-S
T ss_pred -----------hhhcCCCCEEECcCCcccc-cc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-C
Confidence 3456789999999998873 33 258999999999999865433 3578999999999998 5
Q ss_pred cchhHHhcccccceeecccccccccccccc-ccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCccccc
Q 039778 336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKK-NNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIG 414 (459)
Q Consensus 336 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 414 (459)
++...+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. + ....+++|++|++++|.+. .+|..+.
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~ 211 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQ 211 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGG
T ss_pred ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhc
Confidence 555555679999999999999998766666 4789999999999998855 2 2335899999999999999 5666688
Q ss_pred CcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778 415 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 454 (459)
Q Consensus 415 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 454 (459)
.+++|+.|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 9999999999999999 67888999999999999999998
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.3e-22 Score=175.12 Aligned_cols=185 Identities=23% Similarity=0.254 Sum_probs=161.2
Q ss_pred CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778 270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349 (459)
Q Consensus 270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 349 (459)
.+++++|+++++.+. .++...+..+++|+.|++++|.+.......|..+++|++|++++|.+. .++...+..+++|++
T Consensus 36 ~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 36 PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAE 113 (270)
T ss_dssp CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCE
T ss_pred CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCE
Confidence 367999999999988 555544555899999999999998777777889999999999999998 777777778999999
Q ss_pred eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL 429 (459)
Q Consensus 350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 429 (459)
|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 99999999988888889999999999999999877666788999999999999999966666788899999999999999
Q ss_pred cCCCchhhcCCCcccEEeccCCccccc
Q 039778 430 EGPIPSEFCQLDYLEILDLSKNNIAGS 456 (459)
Q Consensus 430 ~~~~~~~~~~~~~L~~L~l~~~~~~~~ 456 (459)
....+..+..+++|+.|++++|++.+.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcCCHHHhccccCCCEEEecCCCeeCC
Confidence 965556688899999999999998765
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.9e-22 Score=176.45 Aligned_cols=158 Identities=20% Similarity=0.188 Sum_probs=89.1
Q ss_pred CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc-cchhHHhcccccce
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE-IPEHLAMGCFNLEY 349 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~ 349 (459)
++|++|++++|.+. .++...+..+++|+.|++++|.+.......+..+++|++|++++|.+.+. ++.. +..+++|++
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~ 153 (276)
T 2z62_A 76 SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEH 153 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCE
T ss_pred cCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCE
Confidence 44445555555444 22222233367777777777777655555566677777777777766521 2332 334666666
Q ss_pred eeccccccccccccccccccCCc----eEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcC
Q 039778 350 LLLSNNSLQGQLFSKKNNLTKLK----RLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP 425 (459)
Q Consensus 350 L~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 425 (459)
|++++|++.+..+..+..+++|+ +|++++|.+....+..+. ..+|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 66666666655555555555555 566666666544333332 2356666666666664333445556666666666
Q ss_pred CCcccC
Q 039778 426 DNHLEG 431 (459)
Q Consensus 426 ~~~~~~ 431 (459)
+|++.+
T Consensus 233 ~N~~~c 238 (276)
T 2z62_A 233 TNPWDC 238 (276)
T ss_dssp SSCBCC
T ss_pred CCcccc
Confidence 666653
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=3.4e-24 Score=190.79 Aligned_cols=182 Identities=19% Similarity=0.211 Sum_probs=90.0
Q ss_pred ccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeecccccc-------CCCCCcEEECcccccCCccCccc
Q 039778 45 EGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELD-------SLSNLEELDMSDNEIDNLVVPKD 117 (459)
Q Consensus 45 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~ 117 (459)
...++|+.|+++++.+ ..+..+... |++|+++++.+........+. .+++|++|++++|.+.... +..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA-PPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC-CCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh-HHH
Confidence 3445555566665555 333333322 555555555543211111121 4556666666666655432 222
Q ss_pred c--cCCCCCcEEecCCCccCCCCcccccccCC-----CcccEEEccCCcccccccccccccCcccccEEEccccccccc-
Q 039778 118 Y--RGLRKLRFLDLSGLRIRDGSKVLHSIGSF-----PSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGS- 189 (459)
Q Consensus 118 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~- 189 (459)
+ ..+++|++|++++|.+... +..+..+ ++|++|++++|.+....+. .+..+++|++|++++|.+.+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE--QVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT--TCCCCSSCCEEECCSCTTCHHH
T ss_pred HHHhcCCCccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCCCccchHH--HhccCCCCCEEECCCCCcCcch
Confidence 2 5566666666666655542 3333333 5666666666665443322 345566666666666654432
Q ss_pred -cchhc--cCCCCCcEEEcCCCcCcC--cCCCCcccCCCcccEEEeecceee
Q 039778 190 -LPWCL--ANLTSLRVLHVPDNQLTG--NLSSSPLMHLTSIEVLLLSNNHFQ 236 (459)
Q Consensus 190 -~~~~l--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~ 236 (459)
.+..+ ..+++|++|++++|.+.+ .+....+..+++|+.|++++|.+.
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 12222 455666666666666542 111122345566666666666544
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=5.6e-23 Score=179.13 Aligned_cols=209 Identities=23% Similarity=0.233 Sum_probs=129.3
Q ss_pred CCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccE
Q 039778 196 NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIA 275 (459)
Q Consensus 196 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 275 (459)
.+++|++|++.++.+. . ...+..+++|+.|++++|.+.... .+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~-~--~~~l~~l~~L~~L~l~~n~l~~~~--------------------------~l~~l~~L~~ 89 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-S--VQGIQYLPNVRYLALGGNKLHDIS--------------------------ALKELTNLTY 89 (272)
T ss_dssp HHTTCCEEECTTSCCC-C--CTTGGGCTTCCEEECTTSCCCCCG--------------------------GGTTCTTCCE
T ss_pred cccceeeeeeCCCCcc-c--ccccccCCCCcEEECCCCCCCCch--------------------------hhcCCCCCCE
Confidence 3456666666666544 1 123455566666666655443100 1223455666
Q ss_pred EEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccc
Q 039778 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 355 (459)
Q Consensus 276 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 355 (459)
|++++|.+. .++...+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|
T Consensus 90 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 90 LILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp EECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCC
Confidence 666666655 344433334677777777777777666666677777777777777776 555555555777777777777
Q ss_pred ccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCch
Q 039778 356 SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS 435 (459)
Q Consensus 356 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 435 (459)
++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.. .+++|+.++++.|.+.+.+|.
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence 7776555556667777777777777776655556667777777777776552 245666666777777766776
Q ss_pred hhcCCCc
Q 039778 436 EFCQLDY 442 (459)
Q Consensus 436 ~~~~~~~ 442 (459)
.++.++.
T Consensus 241 ~~~~~~~ 247 (272)
T 3rfs_A 241 SAGSVAP 247 (272)
T ss_dssp TTSCBCG
T ss_pred cccccCC
Confidence 6665543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=5.6e-22 Score=173.52 Aligned_cols=223 Identities=23% Similarity=0.255 Sum_probs=175.2
Q ss_pred EEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcc
Q 039778 7 LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGF 84 (459)
Q Consensus 7 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 84 (459)
++..+..++ ..+..+ .++|++|++++|.+.+ ...+.++++|++|++++|.+....+..+.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444454554 233333 2579999999998876 33688899999999999999877777899999999999999988
Q ss_pred eeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccc
Q 039778 85 KGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV 164 (459)
Q Consensus 85 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 164 (459)
. ..+...+..+++|++|++++|.+.... +..+..+++|++|++++|.+... .++..+..+++|++|++++|.+....
T Consensus 89 ~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 89 Q-SLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp C-EECTTTTTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred C-ccChhhhcCCccccEEECCCCCccccC-chhcccCCCCCEEECcCCcccee-cCchhhccCCCCCEEECCCCCCCcCC
Confidence 7 455567889999999999999988764 34688999999999999988653 25678889999999999999887654
Q ss_pred cccccccCccccc----EEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec
Q 039778 165 TTTQGLCELVHLQ----DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI 239 (459)
Q Consensus 165 ~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 239 (459)
.. .+..++.|+ .|++++|.+.+..+..+. ..+|++|++++|.+. .++...+..+++|+.|++++|++.+..
T Consensus 166 ~~--~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 166 CT--DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GG--GGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred HH--HhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccC
Confidence 32 344555555 899999998876555554 458999999999987 555667788999999999999887544
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-22 Score=191.92 Aligned_cols=218 Identities=22% Similarity=0.209 Sum_probs=181.5
Q ss_pred CCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccE
Q 039778 196 NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIA 275 (459)
Q Consensus 196 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 275 (459)
.+++|++|++++|.+. .+.+..+..+++|+.|++++|.+..... +..+++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------------l~~l~~L~~ 84 (487)
T 3oja_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--------------------------LESLSTLRT 84 (487)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--------------------------CTTCTTCCE
T ss_pred cCCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--------------------------cccCCCCCE
Confidence 3458999999999988 4556778999999999999998763221 345688999
Q ss_pred EEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccc
Q 039778 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 355 (459)
Q Consensus 276 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 355 (459)
|++++|.+.+ ++. .++|+.|++++|.+....+. .+++|+.|++++|.+++ ++...+..+++|++|++++|
T Consensus 85 L~Ls~N~l~~-l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 85 LDLNNNYVQE-LLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp EECCSSEEEE-EEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTS
T ss_pred EEecCCcCCC-CCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCC
Confidence 9999999873 332 48999999999999865443 45789999999999984 44444456999999999999
Q ss_pred ccccccccccc-cccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCc
Q 039778 356 SLQGQLFSKKN-NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP 434 (459)
Q Consensus 356 ~i~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 434 (459)
.+++..+..+. .+++|++|++++|.+.+.. ....+++|++|++++|.+. .+|+.+..+++|+.|++++|.+. .+|
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp 230 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EEC
T ss_pred CCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCc-ccc
Confidence 99987777775 7899999999999988652 2345899999999999999 45566889999999999999999 578
Q ss_pred hhhcCCCcccEEeccCCccc
Q 039778 435 SEFCQLDYLEILDLSKNNIA 454 (459)
Q Consensus 435 ~~~~~~~~L~~L~l~~~~~~ 454 (459)
..+..+++|+.|++++|+++
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBC
T ss_pred hhhccCCCCCEEEcCCCCCc
Confidence 88999999999999999998
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.3e-21 Score=168.91 Aligned_cols=183 Identities=23% Similarity=0.263 Sum_probs=101.0
Q ss_pred CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778 270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349 (459)
Q Consensus 270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 349 (459)
+++|+.|++.++.+. .++. ...+++|+.|++++|.+.+. ..+..+++|++|++++|.++ .++...+..+++|++
T Consensus 40 l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred ccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCE
Confidence 445556666655544 2221 12255666666666655432 34555566666666666555 444444444566666
Q ss_pred eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL 429 (459)
Q Consensus 350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 429 (459)
|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 66666665554444455556666666666655544444455556666666666665544444445556666666666666
Q ss_pred cCCCchhhcCCCcccEEeccCCcccccCC
Q 039778 430 EGPIPSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 430 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
.+..+..+..+++|+.|++++|++.+..|
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 54444445556666666666666655554
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2.4e-21 Score=170.02 Aligned_cols=179 Identities=25% Similarity=0.238 Sum_probs=108.3
Q ss_pred CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 350 (459)
+.++.|++++|.+.+ ++...+..+++|+.|++++|.+..... ...+++|+.|++++|.+. .++..+ ..+++|++|
T Consensus 31 ~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L 105 (290)
T 1p9a_G 31 KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLG-QTLPALTVL 105 (290)
T ss_dssp TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCT-TTCTTCCEE
T ss_pred CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhh-ccCCCCCEE
Confidence 455666666666552 222223336666666666666653322 245566666666666665 555432 346666777
Q ss_pred eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
++++|++++..+..|..+++|++|++++|.+....+..+..+++|+.|++++|++....+..+..+++|+.|++++|.+.
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 77776666555556666667777777777666555555566666777777777666333344556667777777777666
Q ss_pred CCCchhhcCCCcccEEeccCCcccc
Q 039778 431 GPIPSEFCQLDYLEILDLSKNNIAG 455 (459)
Q Consensus 431 ~~~~~~~~~~~~L~~L~l~~~~~~~ 455 (459)
.+|..+...++|+.|++++|++.+
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred -ccChhhcccccCCeEEeCCCCccC
Confidence 566666666667777777666654
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=8.9e-21 Score=165.08 Aligned_cols=134 Identities=29% Similarity=0.356 Sum_probs=88.7
Q ss_pred CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 350 (459)
++|++|++++|.+. .++...+..+++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 85 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 85 KNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162 (270)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCccccee
Confidence 44444445444444 344444444677777777777777666666777777777777777776 5565555567777777
Q ss_pred eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778 351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 406 (459)
++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 77777777655556666777777777777776555555666777777777777664
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.5e-21 Score=165.04 Aligned_cols=181 Identities=20% Similarity=0.262 Sum_probs=148.5
Q ss_pred CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 350 (459)
...++++++++.+. .+|..+ .+.++.|+++++.+....+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEE
Confidence 35677888888777 666543 367889999999988777778888899999999999888 5665556678899999
Q ss_pred eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+.
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999988777777888899999999999888766666788889999999999888555557888899999999999988
Q ss_pred CCCchhhcCCCcccEEeccCCccccc
Q 039778 431 GPIPSEFCQLDYLEILDLSKNNIAGS 456 (459)
Q Consensus 431 ~~~~~~~~~~~~L~~L~l~~~~~~~~ 456 (459)
+..+..+..+++|+.|++++|++.+.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66666788889999999999998876
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2e-22 Score=182.00 Aligned_cols=257 Identities=16% Similarity=0.149 Sum_probs=136.9
Q ss_pred cccEEEccCCcccccccccccccCc--ccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCccc
Q 039778 149 SLKTLYLKSNNFAKTVTTTQGLCEL--VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE 226 (459)
Q Consensus 149 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 226 (459)
.++.++++++.+.. ..+..+ ++++.+++.++.+.+..+. +..+++|++|++++|.+.+......+..+++|+
T Consensus 48 ~~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCCH-----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 36677777766531 123344 5677777777776655444 335677777777777654331234456667777
Q ss_pred EEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccC-ccccccchhhhhcCCCccEEEeec
Q 039778 227 VLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYN-KLQGHIPVEIGKVLPNLGFLSITF 305 (459)
Q Consensus 227 ~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~ 305 (459)
.|++++|.+..... ..+..+++|++|++++| .+++.........+++|+.|++++
T Consensus 122 ~L~L~~~~l~~~~~------------------------~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 122 NLSLEGLRLSDPIV------------------------NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp EEECTTCBCCHHHH------------------------HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred EEeCcCcccCHHHH------------------------HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence 77776665431110 11223466667777766 444322222233366666666666
Q ss_pred C-cCCCC-CCCcccCCC-CCcEEEccCC--ccccccchhHHhcccccceeeccccc-cccccccccccccCCceEEccCC
Q 039778 306 N-AFNGS-IPSSFGDMN-SLIYLDLSNN--QLTGEIPEHLAMGCFNLEYLLLSNNS-LQGQLFSKKNNLTKLKRLNLDGN 379 (459)
Q Consensus 306 ~-~~~~~-~~~~~~~~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~~ 379 (459)
| .+.+. .+..+..++ +|++|++++| .+++......+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 6 55432 233455556 6666666666 33322222233446666666666666 45455555666666666666666
Q ss_pred c-ccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhc
Q 039778 380 H-FIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFC 438 (459)
Q Consensus 380 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 438 (459)
. +.......+..+++|++|++++| +.+.....+. .++..|++++|.+++..|..++
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 4 22222224555666666666666 3322211111 2344555666666655555444
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=172.86 Aligned_cols=157 Identities=22% Similarity=0.219 Sum_probs=126.2
Q ss_pred cCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc--cc-hhHHhcccccceeeccccccccccc--c-cccc
Q 039778 294 VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE--IP-EHLAMGCFNLEYLLLSNNSLQGQLF--S-KKNN 367 (459)
Q Consensus 294 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~~~~~~L~~L~l~~~~i~~~~~--~-~~~~ 367 (459)
.+++|+.|++++|.+....+..+..+++|++|++++|++.+. ++ ......+++|++|++++|+++.... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 478889999999988877778888999999999999987632 22 2223468899999999999863221 1 3467
Q ss_pred ccCCceEEccCCcccCCCccccccc---CCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCccc
Q 039778 368 LTKLKRLNLDGNHFIGDIPESLSNC---SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 444 (459)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 444 (459)
+++|++|++++|.+.+..|..+..+ ++|++|++++|++. .+|..+. ++|+.|+|++|++++ +|. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCcc
Confidence 8999999999999988777666665 69999999999999 7777664 799999999999994 444 67889999
Q ss_pred EEeccCCcccc
Q 039778 445 ILDLSKNNIAG 455 (459)
Q Consensus 445 ~L~l~~~~~~~ 455 (459)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999985
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=7.9e-23 Score=188.01 Aligned_cols=138 Identities=19% Similarity=0.182 Sum_probs=63.2
Q ss_pred CCccEEEeecCcCCCCC-C---CcccCCCCCcEEEccCCcccccc----chhHHhcccccceeeccccccc----ccccc
Q 039778 296 PNLGFLSITFNAFNGSI-P---SSFGDMNSLIYLDLSNNQLTGEI----PEHLAMGCFNLEYLLLSNNSLQ----GQLFS 363 (459)
Q Consensus 296 ~~L~~L~L~~~~~~~~~-~---~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~----~~~~~ 363 (459)
++|+.|++++|.+.... + ..+..+++|+.|++++|.+++.. ....+..+++|++|++++|.++ ..++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 55555555555554221 1 23334455555555555554221 1112223455555555555553 22334
Q ss_pred ccccccCCceEEccCCcccCC----Cccccc--ccCCCcEEEcccccccC----CCcccc-cCcccccEEEcCCCcccCC
Q 039778 364 KKNNLTKLKRLNLDGNHFIGD----IPESLS--NCSSLQGLYISDNDITG----SIPTWI-GNISFLDAIIMPDNHLEGP 432 (459)
Q Consensus 364 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~ 432 (459)
.+..+++|++|++++|.+... ++.++. .+++|++|++++|.+.+ .+|..+ .++++|+.|++++|.+.+.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 444555555555555554433 122221 14555555555555553 244433 2345555555555555543
Q ss_pred C
Q 039778 433 I 433 (459)
Q Consensus 433 ~ 433 (459)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 3
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=3.7e-22 Score=181.60 Aligned_cols=257 Identities=18% Similarity=0.124 Sum_probs=151.0
Q ss_pred EEccCCcccccccccccccCcccccEEEccccccccccc----hhccCCC-CCcEEEcCCCcCcCcCCCCcccCC-----
Q 039778 153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLP----WCLANLT-SLRVLHVPDNQLTGNLSSSPLMHL----- 222 (459)
Q Consensus 153 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~----- 222 (459)
+.++++.+.+..+. .+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+.. ...+..+
T Consensus 3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN-SDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC-HHHHHHHHHTSC
T ss_pred cccccccchHHHHH--HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH-HHHHHHHHhccC
Confidence 45666666544332 23444558888888888777665 6666777 7888888888776332 3333332
Q ss_pred CcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCC-CCccEEEeccCccccccchhhhhc----CCC
Q 039778 223 TSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSR-KNIIALDISYNKLQGHIPVEIGKV----LPN 297 (459)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~----~~~ 297 (459)
++|+.|++++|.+....... + ...+..+ ++|++|++++|.+.+..+..+... ..+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~-l-------------------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 139 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDE-L-------------------VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHH-H-------------------HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred CCccEEECcCCcCChHHHHH-H-------------------HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence 77888888877654211110 0 0011122 567788888877765444443322 247
Q ss_pred ccEEEeecCcCCCCCCCc----ccCCC-CCcEEEccCCccccccchhHH---hcc-cccceeecccccccccc----ccc
Q 039778 298 LGFLSITFNAFNGSIPSS----FGDMN-SLIYLDLSNNQLTGEIPEHLA---MGC-FNLEYLLLSNNSLQGQL----FSK 364 (459)
Q Consensus 298 L~~L~L~~~~~~~~~~~~----~~~~~-~L~~L~l~~~~~~~~~~~~~~---~~~-~~L~~L~l~~~~i~~~~----~~~ 364 (459)
|++|++++|.+.+..... +...+ +|++|++++|.+++..+..+. ..+ ++|++|++++|.+++.. +..
T Consensus 140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 777777777776433222 23333 777777777777644443322 223 47777777777776532 233
Q ss_pred ccc-ccCCceEEccCCcccCCCc----ccccccCCCcEEEcccccccCC-------CcccccCcccccEEEcCCCcccCC
Q 039778 365 KNN-LTKLKRLNLDGNHFIGDIP----ESLSNCSSLQGLYISDNDITGS-------IPTWIGNISFLDAIIMPDNHLEGP 432 (459)
Q Consensus 365 ~~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~ 432 (459)
+.. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+...
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 333 3477777777777765543 2234556777777777764322 223445566777777777776644
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.1e-21 Score=177.14 Aligned_cols=258 Identities=17% Similarity=0.140 Sum_probs=164.4
Q ss_pred CCcEEECcccccCCccCcccccCC--CCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCccc
Q 039778 98 NLEELDMSDNEIDNLVVPKDYRGL--RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVH 175 (459)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 175 (459)
.++.++++++.+. +..+..+ +.++.++++++.+... ...+..+++|++|++++|.+... .....+..+++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~---~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQP---LAEHFSPFRVQHMDLSNSVIEVS-TLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSC---CCSCCCCBCCCEEECTTCEECHH-HHHHHHTTBCC
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCcccccc---chhhccCCCCCEEEccCCCcCHH-HHHHHHhhCCC
Confidence 4677777776654 2344444 6777777777766542 22344567777777776665321 01123455666
Q ss_pred ccEEEccccccccccchhccCCCCCcEEEcCCC-cCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeee
Q 039778 176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDN-QLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH 254 (459)
Q Consensus 176 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 254 (459)
|++|++++|.+.+..+..+..+++|++|++++| .+.+......+.
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~---------------------------------- 165 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS---------------------------------- 165 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH----------------------------------
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh----------------------------------
Confidence 666666666655555555556666666666665 232111111122
Q ss_pred cCccccCCcccCcCCCCCccEEEeccC-ccccccchhhhhcCC-CccEEEeecC--cCC-CCCCCcccCCCCCcEEEccC
Q 039778 255 ANNSLSGPFRLPTRSRKNIIALDISYN-KLQGHIPVEIGKVLP-NLGFLSITFN--AFN-GSIPSSFGDMNSLIYLDLSN 329 (459)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~L~~~--~~~-~~~~~~~~~~~~L~~L~l~~ 329 (459)
.+++|++|++++| .+++.........++ +|+.|++++| .+. ...+..+..+++|+.|++++
T Consensus 166 --------------~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 166 --------------SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp --------------HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred --------------cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 3455666666666 555432233334488 9999999999 454 23345667889999999999
Q ss_pred Cc-cccccchhHHhcccccceeecccc-ccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccC
Q 039778 330 NQ-LTGEIPEHLAMGCFNLEYLLLSNN-SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITG 407 (459)
Q Consensus 330 ~~-~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 407 (459)
|. +++..+..+ ..+++|++|++++| .+.......+..+++|++|++++| +.......+. .+++.|++++|.+++
T Consensus 232 ~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 232 SVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTT 307 (336)
T ss_dssp CTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCC
T ss_pred CCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCcc
Confidence 98 765666554 45899999999999 454444456788999999999999 5433333332 246677799999998
Q ss_pred CCcccccC
Q 039778 408 SIPTWIGN 415 (459)
Q Consensus 408 ~~~~~~~~ 415 (459)
..|..+..
T Consensus 308 ~~~~~~~~ 315 (336)
T 2ast_B 308 IARPTIGN 315 (336)
T ss_dssp TTCSSCSS
T ss_pred ccCCcccc
Confidence 88876654
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=1e-19 Score=159.66 Aligned_cols=207 Identities=22% Similarity=0.256 Sum_probs=169.4
Q ss_pred hcCCccccEEEeccccccCCc-ccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCc
Q 039778 22 LAGLSSLKNLSLAYNRLEGSI-NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLE 100 (459)
Q Consensus 22 ~~~~~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 100 (459)
+..++++++++++++.+...+ .+ .+++++|++++|.++...+..+..+++|++|+++++.+.. ++. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC--CCCCCcCC
Confidence 566788999999888776532 23 3689999999999987777889999999999999998873 332 36789999
Q ss_pred EEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEE
Q 039778 101 ELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180 (459)
Q Consensus 101 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 180 (459)
+|++++|.+..+ +..+..+++|++|++++|.+... .+..+..+++|+.|++++|++...... .+..+++|+.|+
T Consensus 81 ~L~Ls~N~l~~l--~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~ 154 (290)
T 1p9a_G 81 TLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSL--PLGALRGLGELQELYLKGNELKTLPPG--LLTPTPKLEKLS 154 (290)
T ss_dssp EEECCSSCCSSC--CCCTTTCTTCCEEECCSSCCCCC--CSSTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEE
T ss_pred EEECCCCcCCcC--chhhccCCCCCEEECCCCcCccc--CHHHHcCCCCCCEEECCCCCCCccChh--hcccccCCCEEE
Confidence 999999999876 67788999999999999998864 446788999999999999998765543 467889999999
Q ss_pred ccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccc
Q 039778 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL 241 (459)
Q Consensus 181 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 241 (459)
+++|.+....+..+..+++|++|++++|.+. .+ +..+...++|+.+++++|++......
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i-p~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TI-PKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC-CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc-ChhhcccccCCeEEeCCCCccCcCcc
Confidence 9999998777777888999999999999987 55 34456678999999999988755443
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.2e-20 Score=163.80 Aligned_cols=195 Identities=23% Similarity=0.347 Sum_probs=162.6
Q ss_pred hcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcE
Q 039778 22 LAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEE 101 (459)
Q Consensus 22 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 101 (459)
+..+++|++|+++++.+.+...+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. . ..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C--GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c--hhhcCCCCCCE
Confidence 34578999999999988887788899999999999999875443 8899999999999998763 3 36888999999
Q ss_pred EECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEc
Q 039778 102 LDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181 (459)
Q Consensus 102 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 181 (459)
|++++|.+... + .+..+++|++|++++|.+... +. +..+++|+.|++++|.+..... +..+++|+.|++
T Consensus 112 L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l 180 (308)
T 1h6u_A 112 LDLTSTQITDV--T-PLAGLSNLQVLYLDLNQITNI---SP-LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKA 180 (308)
T ss_dssp EECTTSCCCCC--G-GGTTCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred EECCCCCCCCc--h-hhcCCCCCCEEECCCCccCcC---cc-ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEEC
Confidence 99999998886 3 388999999999999988763 32 7789999999999998875433 678899999999
Q ss_pred cccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeee
Q 039778 182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI 237 (459)
Q Consensus 182 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 237 (459)
++|.+.+..+ +..+++|++|++++|.+.+ +. .+..+++|+.|++++|.+..
T Consensus 181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 181 DDNKISDISP--LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCccCcChh--hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeeec
Confidence 9999876554 7788999999999999873 32 47889999999999998863
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=9.5e-20 Score=161.50 Aligned_cols=190 Identities=24% Similarity=0.392 Sum_probs=143.0
Q ss_pred CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccC
Q 039778 2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMA 81 (459)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (459)
++|++|+++++.++... .+..+++|++|++++|.+.+...+..+++|++|++++|.+... ..+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS 116 (308)
T ss_dssp HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred CCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence 56888888888877532 5777888888888888877755588888888888888887642 3677888888888888
Q ss_pred CcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778 82 TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA 161 (459)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 161 (459)
|.+.. ++ .+..+++|++|++++|.+.... .+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+.
T Consensus 117 n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~---~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 117 TQITD-VT--PLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSD---LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp SCCCC-CG--GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCC---CGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCC-ch--hhcCCCCCCEEECCCCccCcCc---cccCCCCccEEEccCCcCCC---Chh-hcCCCCCCEEECCCCccC
Confidence 87763 32 4777888888888888877763 27778888888888887765 333 777888888888888776
Q ss_pred ccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCc
Q 039778 162 KTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLT 211 (459)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 211 (459)
.... +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 187 ~~~~----l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DISP----LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCGG----GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred cChh----hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 5432 5677888888888888776543 677888888888888765
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.5e-21 Score=179.57 Aligned_cols=237 Identities=19% Similarity=0.201 Sum_probs=176.2
Q ss_pred CCCCcEEEccCCcccccchhh----hcCCccccEEEeccccccC-----Ccc-------cccCccCceEEcCCCCCCc--
Q 039778 1 LSNLKFLDLSHNSFNNSVLSS----LAGLSSLKNLSLAYNRLEG-----SIN-------IEGMNMLESLDLSGNKFNS-- 62 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~-----~~~-------~~~l~~L~~L~l~~~~~~~-- 62 (459)
+++|++|++++|.+++..+.. +..+++|++|++++|.+.. +.. +..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 478999999999988765544 6689999999999875432 112 3688999999999999886
Q ss_pred --ccccccccCCCCcEEEccCCcceeeecccc----ccCC---------CCCcEEECcccccCCccCc---ccccCCCCC
Q 039778 63 --SILSSLTALSSLRKLNLMATGFKGTFDVQE----LDSL---------SNLEELDMSDNEIDNLVVP---KDYRGLRKL 124 (459)
Q Consensus 63 --~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~~~~~~---~~~~~~~~L 124 (459)
..+..+..+++|++|++++|.+.. ..... +..+ ++|++|++++|.+.....+ ..+..+++|
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGP-QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHH-HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCH-HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 356678899999999999998752 22222 3333 8999999999998754434 466788999
Q ss_pred cEEecCCCccCCCC---cccccccCCCcccEEEccCCccccc--ccccccccCcccccEEEccccccccc----cchhcc
Q 039778 125 RFLDLSGLRIRDGS---KVLHSIGSFPSLKTLYLKSNNFAKT--VTTTQGLCELVHLQDLYIDRNDFIGS----LPWCLA 195 (459)
Q Consensus 125 ~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~ 195 (459)
++|++++|.+.... ..+..+..+++|+.|++++|.+... ......+..+++|++|++++|.+.+. ++..+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 99999999876321 1223778899999999999987421 11122467788999999999988765 445553
Q ss_pred --CCCCCcEEEcCCCcCcC----cCCCCcccCCCcccEEEeecceeeee
Q 039778 196 --NLTSLRVLHVPDNQLTG----NLSSSPLMHLTSIEVLLLSNNHFQIP 238 (459)
Q Consensus 196 --~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~ 238 (459)
.+++|++|++++|.+.+ .++.....++++|+.|++++|.+...
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 38999999999998875 24333235689999999999987643
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=4.5e-20 Score=157.66 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=77.2
Q ss_pred CCCccEEEeec-CcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccc---eeecccc-cccccccccccccc
Q 039778 295 LPNLGFLSITF-NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE---YLLLSNN-SLQGQLFSKKNNLT 369 (459)
Q Consensus 295 ~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~i~~~~~~~~~~~~ 369 (459)
+++|+.|++++ +.+.......|..+++|+.|++++|.+. .+|. +..+++|+ +|++++| .+....+..|..++
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchh
Confidence 34444444444 4443333334444455555555555544 2333 23344444 5555555 55544444455566
Q ss_pred CCc-eEEccCCcccCCCcccccccCCCcEEEccccc-ccCCCcccccCc-ccccEEEcCCCcccCCCchhhcCCCcccEE
Q 039778 370 KLK-RLNLDGNHFIGDIPESLSNCSSLQGLYISDND-ITGSIPTWIGNI-SFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 446 (459)
Q Consensus 370 ~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 446 (459)
+|+ +|++++|.+....+..+.. ++|++|++++|+ +....+..+..+ ++|+.|++++|.+. .+|.. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEE
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCcee
Confidence 666 6666666655332233333 566666666663 553334455556 66666666666666 34432 45566666
Q ss_pred eccCC
Q 039778 447 DLSKN 451 (459)
Q Consensus 447 ~l~~~ 451 (459)
.++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 66655
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=4.4e-21 Score=174.48 Aligned_cols=262 Identities=20% Similarity=0.144 Sum_probs=182.7
Q ss_pred EecCCCccCCCCcccccccCCCcccEEEccCCcccccccc--cccccCcc-cccEEEccccccccccchhccCC-----C
Q 039778 127 LDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT--TQGLCELV-HLQDLYIDRNDFIGSLPWCLANL-----T 198 (459)
Q Consensus 127 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~ 198 (459)
+.++.+.+.+. ++..+...++|++|++++|.+...... ...+..++ +|++|++++|.+.+..+..+..+ +
T Consensus 3 ~~ls~n~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNP--VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCH--HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHH--HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 45677776653 555556666699999999998655431 13466777 89999999999887766666553 8
Q ss_pred CCcEEEcCCCcCcCcCCCC----cccCC-CcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCC-CCC
Q 039778 199 SLRVLHVPDNQLTGNLSSS----PLMHL-TSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRS-RKN 272 (459)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~ 272 (459)
+|++|++++|.+.+.. .. .+..+ ++|+.|++++|.+...... .+. ..+.. +++
T Consensus 81 ~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~-------------------~~l~~~~~~ 139 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFK-------------------QAFSNLPAS 139 (362)
T ss_dssp TCCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHH-------------------HHHTTSCTT
T ss_pred CccEEECcCCcCChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHH-------------------HHHHhCCCc
Confidence 9999999999887432 22 23444 7999999999976522111 110 01112 368
Q ss_pred ccEEEeccCccccccchhhh---hcCC-CccEEEeecCcCCCCCCCc----ccCC-CCCcEEEccCCccccc----cchh
Q 039778 273 IIALDISYNKLQGHIPVEIG---KVLP-NLGFLSITFNAFNGSIPSS----FGDM-NSLIYLDLSNNQLTGE----IPEH 339 (459)
Q Consensus 273 L~~L~l~~~~~~~~~~~~~~---~~~~-~L~~L~L~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~ 339 (459)
|++|++++|.+.+.....+. ...+ +|+.|++++|.+.+..+.. +..+ ++|+.|++++|.+.+. ++..
T Consensus 140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 99999999998864444332 1244 8999999999987665433 3444 5999999999998843 3333
Q ss_pred HHhcccccceeeccccccccccc----cccccccCCceEEccCCcccCCCc-------ccccccCCCcEEEcccccccCC
Q 039778 340 LAMGCFNLEYLLLSNNSLQGQLF----SKKNNLTKLKRLNLDGNHFIGDIP-------ESLSNCSSLQGLYISDNDITGS 408 (459)
Q Consensus 340 ~~~~~~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~ 408 (459)
+....++|++|++++|.+++..+ ..+..+++|++|++++|.+....+ ..+..+++|++|++++|++.+.
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33334699999999999987544 344677899999999998544332 3566778899999999998866
Q ss_pred Ccc
Q 039778 409 IPT 411 (459)
Q Consensus 409 ~~~ 411 (459)
.+.
T Consensus 300 ~~~ 302 (362)
T 3goz_A 300 HSI 302 (362)
T ss_dssp GCH
T ss_pred chH
Confidence 443
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=164.20 Aligned_cols=227 Identities=20% Similarity=0.196 Sum_probs=169.3
Q ss_pred CCcEEEccCCcccccchhhh---cCCccccEEEeccccccC--Cccc--ccCccCceEEcCCCCCCcccc----cccccC
Q 039778 3 NLKFLDLSHNSFNNSVLSSL---AGLSSLKNLSLAYNRLEG--SINI--EGMNMLESLDLSGNKFNSSIL----SSLTAL 71 (459)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~--~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l 71 (459)
.++.+.+.++.+++.....+ ..+++|++|++++|.+.+ +..+ ..+++|++|++++|.++...+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46788888887765333222 235679999999998765 3344 789999999999999875433 344579
Q ss_pred CCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCC---ccCcccccCCCCCcEEecCCCccCCCCcccc-cccCC
Q 039778 72 SSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDN---LVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH-SIGSF 147 (459)
Q Consensus 72 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~ 147 (459)
++|++|++++|.+. ..+...+..+++|++|++++|.+.. ......+..+++|++|++++|.+......+. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 99999999999986 5555678899999999999998654 2223345788999999999998865322222 24678
Q ss_pred CcccEEEccCCccccccc-ccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCccc
Q 039778 148 PSLKTLYLKSNNFAKTVT-TTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE 226 (459)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 226 (459)
++|++|++++|.+....+ ....+..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+ ++ .+..+++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~--~~~~l~~L~ 297 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-AP--QPDELPEVD 297 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CC--CTTSCCCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cc--hhhhCCCcc
Confidence 999999999999877633 2222333479999999999988 4455553 799999999999883 32 257789999
Q ss_pred EEEeecceee
Q 039778 227 VLLLSNNHFQ 236 (459)
Q Consensus 227 ~L~l~~~~~~ 236 (459)
.|++++|++.
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 9999998765
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=6e-20 Score=156.88 Aligned_cols=185 Identities=19% Similarity=0.224 Sum_probs=155.6
Q ss_pred CCCCccEEEeccCccccccchhhhhcCCCccEEEeecCc-CCCCCCCcccCCCCCcEEEccC-CccccccchhHHhcccc
Q 039778 269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNA-FNGSIPSSFGDMNSLIYLDLSN-NQLTGEIPEHLAMGCFN 346 (459)
Q Consensus 269 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~ 346 (459)
...++++|+++++.+. .++...+..+++|+.|++++|. +.......|.++++|++|++++ |.+. .++...+..+++
T Consensus 29 ~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~ 106 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPL 106 (239)
T ss_dssp CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTT
T ss_pred CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCC
Confidence 3458999999999998 5666555569999999999997 8766777899999999999998 8888 777777778999
Q ss_pred cceeeccccccccccccccccccCCc---eEEccCC-cccCCCcccccccCCCc-EEEcccccccCCCcccccCcccccE
Q 039778 347 LEYLLLSNNSLQGQLFSKKNNLTKLK---RLNLDGN-HFIGDIPESLSNCSSLQ-GLYISDNDITGSIPTWIGNISFLDA 421 (459)
Q Consensus 347 L~~L~l~~~~i~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~ 421 (459)
|++|++++|++.+ .+. +..+++|+ +|++++| .+....+..|..+++|+ +|++++|++. .+|......++|+.
T Consensus 107 L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 107 LKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183 (239)
T ss_dssp CCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred CCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence 9999999999986 333 77888888 9999999 88876667789999999 9999999998 55554334489999
Q ss_pred EEcCCCc-ccCCCchhhcCC-CcccEEeccCCcccccCCC
Q 039778 422 IIMPDNH-LEGPIPSEFCQL-DYLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 422 L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p~ 459 (459)
|++++|+ +....+..+..+ ++|+.|++++|+++ .+|+
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~ 222 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCC
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCCh
Confidence 9999995 885556778889 99999999999998 6663
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=7.5e-20 Score=152.69 Aligned_cols=155 Identities=23% Similarity=0.263 Sum_probs=76.6
Q ss_pred CCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEE
Q 039778 296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLN 375 (459)
Q Consensus 296 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 375 (459)
++++.|+++++.+.......+..+++|++|++++|.+. .++...+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34555555555554444444445555555555555554 44444444455555555555555544344444555555555
Q ss_pred ccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccc
Q 039778 376 LDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 455 (459)
Q Consensus 376 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 455 (459)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .++.|+.|+++.|+++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 55555554433344455555555555555553333334445555555555554441 23344555555555555
Q ss_pred cCC
Q 039778 456 SLP 458 (459)
Q Consensus 456 ~~p 458 (459)
.+|
T Consensus 180 ~ip 182 (208)
T 2o6s_A 180 VVR 182 (208)
T ss_dssp TBB
T ss_pred eee
Confidence 554
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=4.2e-19 Score=152.73 Aligned_cols=161 Identities=24% Similarity=0.286 Sum_probs=141.2
Q ss_pred CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778 270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349 (459)
Q Consensus 270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 349 (459)
.+.++.|+++++.+.+ ++...+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++
T Consensus 34 ~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 34 PADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDK 111 (251)
T ss_dssp CTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCE
Confidence 4689999999999985 44444445899999999999999888888999999999999999998 777777778999999
Q ss_pred eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL 429 (459)
Q Consensus 350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 429 (459)
|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 99999999977777788899999999999999977777888999999999999999966667888999999999999999
Q ss_pred cCC
Q 039778 430 EGP 432 (459)
Q Consensus 430 ~~~ 432 (459)
.+.
T Consensus 192 ~c~ 194 (251)
T 3m19_A 192 DCS 194 (251)
T ss_dssp CTT
T ss_pred eCC
Confidence 854
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=144.38 Aligned_cols=152 Identities=26% Similarity=0.291 Sum_probs=83.9
Q ss_pred cEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCC-CCcccCCCCCcEEEccCCccccccchhHHhcccccceeec
Q 039778 274 IALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSI-PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 352 (459)
Q Consensus 274 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 352 (459)
+.++++++.+. .+|..+ .+.++.|++++|.+.... ...|..+++|+.|++++|.++ .++...+..+++|++|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEEC
Confidence 46666666665 444432 234556666666655432 233555556666666666555 444434444555666666
Q ss_pred cccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 353 SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 353 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 666555555555555555666666655555555555555555555555555555444555555555555555555554
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1e-18 Score=145.78 Aligned_cols=166 Identities=24% Similarity=0.224 Sum_probs=143.7
Q ss_pred CCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccc
Q 039778 268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL 347 (459)
Q Consensus 268 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 347 (459)
...+++++|+++++.+. .++...+..+++|++|++++|.+.......+..+++|++|++++|.+. .++...+..+++|
T Consensus 25 ~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L 102 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQL 102 (208)
T ss_dssp CCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCC
Confidence 34568999999999998 566655556999999999999999777777899999999999999998 7777777779999
Q ss_pred ceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCC
Q 039778 348 EYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN 427 (459)
Q Consensus 348 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 427 (459)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++. ..+++|+.|+++.|
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWIN 175 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHH
Confidence 99999999999777777889999999999999998776667888999999999999776 34578999999999
Q ss_pred cccCCCchhhcCCCc
Q 039778 428 HLEGPIPSEFCQLDY 442 (459)
Q Consensus 428 ~~~~~~~~~~~~~~~ 442 (459)
.+.+.+|..++.++.
T Consensus 176 ~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 176 KHSGVVRNSAGSVAP 190 (208)
T ss_dssp HCTTTBBCTTSSBCT
T ss_pred hCCceeeccCccccC
Confidence 999999988887654
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4.2e-18 Score=149.50 Aligned_cols=172 Identities=20% Similarity=0.325 Sum_probs=140.3
Q ss_pred CCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccc
Q 039778 268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL 347 (459)
Q Consensus 268 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 347 (459)
..+++|++|+++++.+. .++. ...+++|+.|++++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTC
T ss_pred hhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCC
Confidence 35678999999999887 4443 3348999999999999886443 888999999999999987 4443 4568999
Q ss_pred ceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCC
Q 039778 348 EYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN 427 (459)
Q Consensus 348 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 427 (459)
++|++++|++.+. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999998863 5677889999999999998865 567888999999999999885443 788999999999999
Q ss_pred cccCCCchhhcCCCcccEEeccCCcccc
Q 039778 428 HLEGPIPSEFCQLDYLEILDLSKNNIAG 455 (459)
Q Consensus 428 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 455 (459)
.+. .++. +..+++|+.|++++|+++.
T Consensus 189 ~i~-~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HIS-DLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCC-BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred cCC-CChh-hccCCCCCEEECcCCcccC
Confidence 988 4553 8889999999999998874
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=5.1e-18 Score=142.40 Aligned_cols=152 Identities=20% Similarity=0.225 Sum_probs=91.4
Q ss_pred cEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecc
Q 039778 274 IALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 353 (459)
Q Consensus 274 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 353 (459)
+.++++++.++ .+|..+ .++++.|++++|.+.......|..+++|+.|++++|.+. .+....+..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence 56666666665 455432 246666666666666555555666666666666666665 3433334456666666666
Q ss_pred ccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 354 NNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 354 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
+|.++......|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666544445556666666666666666555555666666666666666666444445556666666666666654
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.1e-18 Score=141.31 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=121.7
Q ss_pred CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL 374 (459)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 374 (459)
+++|+.|+++++.+... + .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 67788888888888732 3 5777888899999888765 333 34458899999999999887777888889999999
Q ss_pred EccCCcccCCCcccccccCCCcEEEccccc-ccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcc
Q 039778 375 NLDGNHFIGDIPESLSNCSSLQGLYISDND-ITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453 (459)
Q Consensus 375 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 453 (459)
++++|.+.+..+..+..+++|++|++++|+ +. .++ .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|+|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 999999887777888899999999999998 55 555 67889999999999999884 44 678899999999999998
Q ss_pred cc
Q 039778 454 AG 455 (459)
Q Consensus 454 ~~ 455 (459)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 64
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1.7e-17 Score=150.04 Aligned_cols=223 Identities=14% Similarity=0.079 Sum_probs=129.1
Q ss_pred ccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEE-EeecceeeeecccccccccCCcee
Q 039778 174 VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVL-LLSNNHFQIPISLEPFFNYSKLKI 252 (459)
Q Consensus 174 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~l~~ 252 (459)
+++++|++++|.+....+.+|.++++|++|++++|.+.+.++...+.++++++.+ .+.+|.+....
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~------------- 96 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN------------- 96 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-------------
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-------------
Confidence 3566666666666554445566666666666666665544544555666665543 33333332100
Q ss_pred eecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeec-CcCCCCCCCcccCCC-CCcEEEccCC
Q 039778 253 FHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITF-NAFNGSIPSSFGDMN-SLIYLDLSNN 330 (459)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~-~L~~L~l~~~ 330 (459)
...+..+++|++|++++|.+. .++........++..+++.+ +.+.......|..+. .++.|++++|
T Consensus 97 -----------~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 97 -----------PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp -----------TTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred -----------chhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 112334456666666666665 33333322245566677655 344434444455543 5777888888
Q ss_pred ccccccchhHHhcccccceeeccc-cccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCC
Q 039778 331 QLTGEIPEHLAMGCFNLEYLLLSN-NSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 409 (459)
+++ .++..++. .++|+.+++.+ |.++.....+|..+++|++|++++|+++...+.. +.+|+.|.+.++.....+
T Consensus 165 ~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 165 GIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKL 239 (350)
T ss_dssp CCC-EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCC
T ss_pred ccc-CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcC
Confidence 777 66666654 56777777764 4555444456777778888888888776443322 446666666666555456
Q ss_pred cccccCcccccEEEcCCC
Q 039778 410 PTWIGNISFLDAIIMPDN 427 (459)
Q Consensus 410 ~~~~~~~~~L~~L~l~~~ 427 (459)
|. +.++++|+.+++.++
T Consensus 240 P~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 240 PT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CC-TTTCCSCCEEECSCH
T ss_pred CC-chhCcChhhCcCCCC
Confidence 53 566777777777654
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3.7e-18 Score=154.93 Aligned_cols=178 Identities=24% Similarity=0.211 Sum_probs=141.6
Q ss_pred ccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCccc-CCCCCcEEEccCCccccccchhHHhcccccceee
Q 039778 273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFG-DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL 351 (459)
Q Consensus 273 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 351 (459)
-+.++++++.+. .+|..+ .+.++.|+|++|.+.......+. .+++|+.|++++|++. .++...+..+++|++|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence 357788888777 566543 45688999999988877777776 8889999999999988 66666666789999999
Q ss_pred ccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccc---cCcccccEEEcCCCc
Q 039778 352 LSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWI---GNISFLDAIIMPDNH 428 (459)
Q Consensus 352 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 428 (459)
+++|++....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+ ..+++|+.|+|++|.
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99999887777778888999999999999887777888889999999999999884333344 468899999999999
Q ss_pred ccCCCchhhcCCCc--ccEEeccCCcccc
Q 039778 429 LEGPIPSEFCQLDY--LEILDLSKNNIAG 455 (459)
Q Consensus 429 ~~~~~~~~~~~~~~--L~~L~l~~~~~~~ 455 (459)
+....+..+..++. ++.|++++|++.+
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCccCHHHhhhccHhhcceEEecCCCccC
Confidence 98544566777776 4889999998875
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=9.2e-18 Score=138.48 Aligned_cols=153 Identities=23% Similarity=0.349 Sum_probs=104.2
Q ss_pred cCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778 23 AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL 102 (459)
Q Consensus 23 ~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 102 (459)
..+++|++|+++++.+.+...+..+++|++|++++|.+.. ...+..+++|++|++++|.+.. .....+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEE
Confidence 4456777777777777665567777778888887776542 3367777778888887777653 223356777778888
Q ss_pred ECcccccCCccCcccccCCCCCcEEecCCCc-cCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEc
Q 039778 103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR-IRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181 (459)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 181 (459)
++++|.+.... +..+..+++|++|++++|. +.. ++ .+..+++|+.|++++|.+.... .+..+++|++|++
T Consensus 118 ~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~---~~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l 188 (197)
T 4ezg_A 118 DISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITD---IM-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYA 188 (197)
T ss_dssp ECCSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCC---CG-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEE
T ss_pred EecCCccCcHh-HHHHhhCCCCCEEEccCCCCccc---cH-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEe
Confidence 88877776533 4567777788888888776 544 33 5667778888888887776532 3566777888888
Q ss_pred cccccc
Q 039778 182 DRNDFI 187 (459)
Q Consensus 182 ~~~~~~ 187 (459)
++|++.
T Consensus 189 ~~N~i~ 194 (197)
T 4ezg_A 189 FSQTIG 194 (197)
T ss_dssp CBC---
T ss_pred eCcccC
Confidence 777654
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.4e-17 Score=158.08 Aligned_cols=161 Identities=30% Similarity=0.379 Sum_probs=129.6
Q ss_pred CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 350 (459)
++|++|++++|.+. .+| ..+++|+.|++++|.+.. ++. +.. +|+.|++++|.++ .+|. .+++|+.|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L 145 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYI 145 (571)
T ss_dssp TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEE
T ss_pred CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEE
Confidence 67999999999888 677 337899999999998886 444 554 8999999999988 4666 48899999
Q ss_pred eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccc-------cEEE
Q 039778 351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFL-------DAII 423 (459)
Q Consensus 351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~ 423 (459)
++++|.+++ ++. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.+. .+|. +.. +| +.|+
T Consensus 146 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 146 NADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFR 213 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEE
T ss_pred eCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEe
Confidence 999999886 333 46889999999999886 555 55 78999999999988 6766 543 67 9999
Q ss_pred cCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778 424 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
|++|.++ .+|..+..+++|+.|+|++|++++.+|
T Consensus 214 Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 214 CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred cCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 9999998 688888889999999999999988765
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=2.6e-17 Score=144.43 Aligned_cols=189 Identities=24% Similarity=0.370 Sum_probs=133.0
Q ss_pred cccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcc
Q 039778 27 SLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD 106 (459)
Q Consensus 27 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 106 (459)
++..+.+....+.+......+++|++|++++|.+... ..+..+++|++|++++|.+.+ .+. +..+++|++|++++
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCS
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCC
Confidence 3444445555555555566777777788877776533 346777788888887777663 322 67777888888888
Q ss_pred cccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccccc
Q 039778 107 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDF 186 (459)
Q Consensus 107 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 186 (459)
|.+... ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+
T Consensus 100 n~l~~~---~~l~~l~~L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 100 NKVKDL---SSLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp SCCCCG---GGGTTCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCC
T ss_pred CcCCCC---hhhccCCCCCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCcc
Confidence 777664 2477778888888888877652 3566778888888888877654 2466778888888888887
Q ss_pred ccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceee
Q 039778 187 IGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236 (459)
Q Consensus 187 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 236 (459)
.+..+ +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l--~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-L--RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-C--GGGTTCTTCSEEEEEEEEEE
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-C--hhhccCCCCCEEECcCCccc
Confidence 76554 6778888888888887763 3 23777888888888888765
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.4e-17 Score=139.24 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=127.2
Q ss_pred CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778 270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349 (459)
Q Consensus 270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 349 (459)
.+.-+.++.+++.+. .+|..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++
T Consensus 18 ~Cs~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 18 SCSGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTV 92 (229)
T ss_dssp EEETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred EEeCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCE
Confidence 345677888888776 666543 478999999999998877788888899999999999887 777777777889999
Q ss_pred eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL 429 (459)
Q Consensus 350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 429 (459)
|++++|++++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 999999888766677788888999999888887 5677778888889999998888855556677888888888888888
Q ss_pred cCC
Q 039778 430 EGP 432 (459)
Q Consensus 430 ~~~ 432 (459)
.+.
T Consensus 172 ~c~ 174 (229)
T 3e6j_A 172 DCE 174 (229)
T ss_dssp CTT
T ss_pred cCC
Confidence 743
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.1e-17 Score=157.62 Aligned_cols=169 Identities=27% Similarity=0.362 Sum_probs=79.4
Q ss_pred CccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEEC
Q 039778 25 LSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDM 104 (459)
Q Consensus 25 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 104 (459)
+++|+.|+++++.+.+...+..+++|++|+|++|.+....+ +..+++|++|++++|.+.. + ..+..+++|++|++
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L--SSLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C--TTSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C--hhhccCCCCCEEEe
Confidence 44555555555544444445555555555555555443222 4455555555555554431 1 13444555555555
Q ss_pred cccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccc
Q 039778 105 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRN 184 (459)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 184 (459)
++|.+..+ ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|
T Consensus 117 s~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 117 EHNGISDI---NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTSCCCCC---GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred cCCCCCCC---ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCC
Confidence 55554443 2344455555555555544431 334445555555555554433222 344445555555555
Q ss_pred ccccccchhccCCCCCcEEEcCCCcCc
Q 039778 185 DFIGSLPWCLANLTSLRVLHVPDNQLT 211 (459)
Q Consensus 185 ~~~~~~~~~l~~~~~L~~L~l~~~~~~ 211 (459)
.+.+. ..+..+++|+.|++++|.+.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCc
Confidence 44432 12444455555555554443
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=3.8e-17 Score=137.07 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=114.5
Q ss_pred cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778 299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG 378 (459)
Q Consensus 299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 378 (459)
+.++++++.+... +..+. +.++.|++++|.+++..+...+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4677777777643 33332 35678888888877433455566678888888888888766666777788888888888
Q ss_pred CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccccc
Q 039778 379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGS 456 (459)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 456 (459)
|.+....+..|..+++|++|++++|.+.+..|..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|++.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 888776666777788888888888888766677777788888888888888766677777888888888888887654
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=7.8e-17 Score=136.15 Aligned_cols=133 Identities=27% Similarity=0.276 Sum_probs=66.2
Q ss_pred CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 350 (459)
++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.......|..+++|+.|++++|.++ .++...+..+++|++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence 455555555555553222222 22455555555555554444444455555555555555554 4444444445555555
Q ss_pred eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778 351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 406 (459)
++++|++. .++..+..+++|++|++++|.+....+..+..+++|+.|++.+|++.
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55555554 33444445555555555555555443344445555555555555544
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=5.7e-17 Score=135.99 Aligned_cols=134 Identities=24% Similarity=0.331 Sum_probs=67.8
Q ss_pred CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 350 (459)
++++.|+++++.+. .++...+..+++|+.|++++|.+....+..|.++++|++|++++|.++ .++..++..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEE
Confidence 44555555555554 233322333455555555555555444445555555555555555554 4444444445555555
Q ss_pred eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778 351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 406 (459)
++++|++.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|++.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555555444445555555555555555555444444445555555555555443
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=6.6e-17 Score=155.37 Aligned_cols=171 Identities=25% Similarity=0.349 Sum_probs=148.4
Q ss_pred CCCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEcc
Q 039778 1 LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLM 80 (459)
Q Consensus 1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (459)
+++|+.|+++++.++... .+..+++|+.|+|++|.+.+...+..+++|+.|+|++|.+.. +..+..+++|++|+++
T Consensus 42 L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CTTSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--ChhhccCCCCCEEEec
Confidence 468999999999988643 588899999999999999887779999999999999999874 3478999999999999
Q ss_pred CCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcc
Q 039778 81 ATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (459)
+|.+.. + ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+... +. +..+++|+.|++++|.+
T Consensus 118 ~N~l~~-l--~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~---~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 118 HNGISD-I--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDI---VP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp TSCCCC-C--GGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCC
T ss_pred CCCCCC-C--ccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCc---hh-hccCCCCCEEECcCCCC
Confidence 998873 3 3688899999999999999886 5788999999999999998774 33 88999999999999998
Q ss_pred cccccccccccCcccccEEEccccccccc
Q 039778 161 AKTVTTTQGLCELVHLQDLYIDRNDFIGS 189 (459)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 189 (459)
... ..+..+++|+.|++++|++...
T Consensus 188 ~~l----~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 188 SDL----RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CBC----GGGTTCTTCSEEECCSEEEECC
T ss_pred CCC----hHHccCCCCCEEEccCCcCcCC
Confidence 764 2478899999999999988764
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=2.7e-16 Score=142.08 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=48.3
Q ss_pred cEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCccc-ccccccCCCCcEEEc-c
Q 039778 5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSI-LSSLTALSSLRKLNL-M 80 (459)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l-~ 80 (459)
++++.+++.++.+ |..+ .+++++|++++|.+.. ..+|.++++|++|+|++|++.+.. ..+|.++++++.+.. .
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3445555555522 2222 2355555555555543 223555555555555555543322 234455555444322 2
Q ss_pred CCcceeeeccccccCCCCCcEEECcccccCCc
Q 039778 81 ATGFKGTFDVQELDSLSNLEELDMSDNEIDNL 112 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 112 (459)
.+.+. .++...+..+++|++|++++|.+...
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred CCccc-ccCchhhhhccccccccccccccccC
Confidence 23333 33334455555555555555555443
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=7.9e-17 Score=153.04 Aligned_cols=124 Identities=29% Similarity=0.314 Sum_probs=57.9
Q ss_pred CccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEc
Q 039778 297 NLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNL 376 (459)
Q Consensus 297 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 376 (459)
+|+.|++++|.+.. ++. .+++|+.|++++|.++ .+|. .+++|++|++++|.+++ ++. +. ++|++|++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 44444444444443 111 3344555555555544 2333 24455555555555543 222 32 45555555
Q ss_pred cCCcccCCCcccccccCCC-------cEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhc
Q 039778 377 DGNHFIGDIPESLSNCSSL-------QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFC 438 (459)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 438 (459)
++|.+. .+|. +.. +| +.|++++|.+. .+|..+..+++|+.|+|++|.+++.+|..+.
T Consensus 188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 555544 2233 322 34 55555555555 4455455555555555555555554454443
No 114
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.70 E-value=8.6e-16 Score=141.21 Aligned_cols=330 Identities=12% Similarity=0.105 Sum_probs=177.9
Q ss_pred CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccC
Q 039778 41 SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120 (459)
Q Consensus 41 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 120 (459)
..+|.+|.+|+.+.+... ++.+...+|.+|++|+.+.+..+ + ..++..+|..+++|+.+.+... +..+. ..++..
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~-~~aF~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-V-KMIGRCTFSGCYALKSILLPLM-LKSIG-VEAFKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCCCCCCTT-CCEEC-TTTTTT
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-c-eEccchhhcccccchhhcccCc-eeeec-ceeeec
Confidence 345566666666666532 44455555666666666666433 2 2344445556666665555432 22221 233344
Q ss_pred CCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCC
Q 039778 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSL 200 (459)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 200 (459)
+..++.......... ...+|.++++|+.+.+..+.. ... ...+..+.+|+.+.+..+ +......+|.++..|
T Consensus 139 ~~~~~~~~~~~~~~i----~~~aF~~c~~L~~i~l~~~~~-~I~--~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 139 CDFKEITIPEGVTVI----GDEAFATCESLEYVSLPDSME-TLH--NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp CCCSEEECCTTCCEE----CTTTTTTCTTCCEEECCTTCC-EEC--TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred ccccccccCcccccc----chhhhcccCCCcEEecCCccc-eec--cccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 433332222222111 123455666666666654321 111 123555666666666543 333444556666666
Q ss_pred cEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEecc
Q 039778 201 RVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISY 280 (459)
Q Consensus 201 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 280 (459)
+.+.+.+.... + .........|+.+.+...... .. ...+..+..++.+.+..
T Consensus 211 ~~i~~~~~~~~--i-~~~~~~~~~l~~i~ip~~~~~--i~-----------------------~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 211 ENMEFPNSLYY--L-GDFALSKTGVKNIIIPDSFTE--LG-----------------------KSVFYGCTDLESISIQN 262 (394)
T ss_dssp CBCCCCTTCCE--E-CTTTTTTCCCCEEEECTTCCE--EC-----------------------SSTTTTCSSCCEEEECC
T ss_pred ceeecCCCceE--e-ehhhcccCCCceEEECCCcee--cc-----------------------cccccccccceeEEcCC
Confidence 66666554321 1 122233455666655432111 00 11233445555555554
Q ss_pred CccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccc
Q 039778 281 NKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ 360 (459)
Q Consensus 281 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 360 (459)
+.. .+....+..+..++.+......+. ...|..+.+|+.+.+.++ +. .+...+|.+|++|+.+++..+ +...
T Consensus 263 ~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I 334 (394)
T 4fs7_A 263 NKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEI 334 (394)
T ss_dssp TTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred Ccc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEE
Confidence 322 233333444666666666554332 245667778888888654 44 677777777888888888653 5545
Q ss_pred cccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEE
Q 039778 361 LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAI 422 (459)
Q Consensus 361 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 422 (459)
...+|.++.+|+.+++..+ +..+...+|..|.+|+.+++..+ +. .+..+|.++++|+.+
T Consensus 335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 5677888888888888765 66566677888888888888654 22 334567777777764
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=3e-17 Score=147.07 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=48.3
Q ss_pred CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccc-eeeccccccccccccccccccCCce
Q 039778 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE-YLLLSNNSLQGQLFSKKNNLTKLKR 373 (459)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~L~~ 373 (459)
+++|+.++++++.+.......|.++++|+.++++++ +. .++..+|.+|++|+ .+++.+ .+......+|..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 455555555555444444444555555555555544 33 44444444455554 555544 333333444444444444
Q ss_pred EEccCCcccCCCcccccccCCCcEE
Q 039778 374 LNLDGNHFIGDIPESLSNCSSLQGL 398 (459)
Q Consensus 374 L~l~~~~~~~~~~~~~~~~~~L~~L 398 (459)
+++.++.+....+.+|.++++|++|
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEeCCCccCccchhhhcCCcchhhh
Confidence 4444444444444444444444444
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3.9e-17 Score=140.94 Aligned_cols=168 Identities=20% Similarity=0.252 Sum_probs=101.3
Q ss_pred CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 350 (459)
.++..++++++.+. .++ . ...+++|+.|++++|.+.... .+..+++|+.|++++|.++ .++. +..+++|++|
T Consensus 19 ~~l~~l~l~~~~i~-~~~-~-~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 19 ANAVKQNLGKQSVT-DLV-S-QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHTCSCTT-SEE-C-HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEE
T ss_pred HHHHHHHhcCCCcc-ccc-c-hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEE
Confidence 34455555555555 222 1 122566777777776665332 4666667777777777666 3433 4456777777
Q ss_pred eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
++++|++.+... +.. ++|++|++++|.+.+. ..+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCc
Confidence 777776664221 222 6677777777766643 246666777777777777663 33 4566677777777777766
Q ss_pred CCCchhhcCCCcccEEeccCCcccc
Q 039778 431 GPIPSEFCQLDYLEILDLSKNNIAG 455 (459)
Q Consensus 431 ~~~~~~~~~~~~L~~L~l~~~~~~~ 455 (459)
+. ..+..+++|+.|++++|++++
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch--HHhccCCCCCEEeCCCCcccC
Confidence 43 456666777777777777664
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=6.1e-17 Score=139.76 Aligned_cols=168 Identities=19% Similarity=0.268 Sum_probs=94.2
Q ss_pred CccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEEC
Q 039778 25 LSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDM 104 (459)
Q Consensus 25 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 104 (459)
+.++..++++++.+.+...+..+++|++|++++|.++.. + .+..+++|++|++++|.+. ..+. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEEC
Confidence 344555555555555544555566666666666655432 2 4556666666666666554 2222 555666666666
Q ss_pred cccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccc
Q 039778 105 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRN 184 (459)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 184 (459)
++|.+.... . +.. ++|++|++++|.+... ..+..+++|+.|++++|++.+.. .+..+++|++|++++|
T Consensus 93 ~~N~l~~l~--~-~~~-~~L~~L~L~~N~l~~~----~~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 93 NRNRLKNLN--G-IPS-ACLSRLFLDNNELRDT----DSLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CSSCCSCCT--T-CCC-SSCCEEECCSSCCSBS----GGGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTS
T ss_pred CCCccCCcC--c-ccc-CcccEEEccCCccCCC----hhhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCC
Confidence 666665542 1 222 6666666666665542 23556666666666666655431 3455666666666666
Q ss_pred ccccccchhccCCCCCcEEEcCCCcCc
Q 039778 185 DFIGSLPWCLANLTSLRVLHVPDNQLT 211 (459)
Q Consensus 185 ~~~~~~~~~l~~~~~L~~L~l~~~~~~ 211 (459)
.+.+. ..+..+++|+.|+++++.+.
T Consensus 161 ~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 161 EITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cCcch--HHhccCCCCCEEeCCCCccc
Confidence 66554 44555666666666666554
No 118
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=3.4e-15 Score=137.27 Aligned_cols=336 Identities=13% Similarity=0.094 Sum_probs=226.7
Q ss_pred CCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCC
Q 039778 59 KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 138 (459)
Q Consensus 59 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 138 (459)
.++.+...+|.+|.+|+.+.+... +. .++..+|..|++|+.+++.++ +..+. ..++..+..|+.+.+..+-.. .
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~-~~aF~~c~~L~~i~~p~~l~~-i- 131 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIG-RCTFSGCYALKSILLPLMLKS-I- 131 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEEC-TTTTTTCTTCCCCCCCTTCCE-E-
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEcc-chhhcccccchhhcccCceee-e-
Confidence 356677888999999999999754 33 677778999999999999755 44443 467788888888877654221 1
Q ss_pred cccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCc
Q 039778 139 KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSP 218 (459)
Q Consensus 139 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 218 (459)
...++..+............. . ...++..+.+|+.+.+.++ +......+|..+.+|+.+.+..+ +. .+....
T Consensus 132 -~~~aF~~~~~~~~~~~~~~~~--i--~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~ 203 (394)
T 4fs7_A 132 -GVEAFKGCDFKEITIPEGVTV--I--GDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LK-IIRDYC 203 (394)
T ss_dssp -CTTTTTTCCCSEEECCTTCCE--E--CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CC-EECTTT
T ss_pred -cceeeecccccccccCccccc--c--chhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ce-EeCchh
Confidence 223444554433332222211 1 1235778889999998654 33455677888899999988765 22 455666
Q ss_pred ccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCc
Q 039778 219 LMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 298 (459)
Q Consensus 219 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 298 (459)
+..+..|+.+.+..+.... ......+..|+.+.+.... . .+....+..+..+
T Consensus 204 F~~~~~L~~i~~~~~~~~i--------------------------~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l 255 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYYL--------------------------GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDL 255 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEE--------------------------CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSC
T ss_pred hccccccceeecCCCceEe--------------------------ehhhcccCCCceEEECCCc-e-ecccccccccccc
Confidence 7788888877665542221 1112234567777775432 1 3444455558888
Q ss_pred cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778 299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG 378 (459)
Q Consensus 299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 378 (459)
+.+.+..+.. ......|..+..++.+..... .++...+..+.+|+.+.+.++ +......+|..+.+|+.+++.+
T Consensus 256 ~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 256 ESISIQNNKL-RIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp CEEEECCTTC-EECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred eeEEcCCCcc-eeeccccccccccceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence 8888876533 345667888888888887664 355566777899999998764 5545567888899999999965
Q ss_pred CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEE
Q 039778 379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 446 (459)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 446 (459)
+ +..+...+|.+|.+|+.+.+..+ +......+|.+|++|+.+++.++ +. .+...|..+++|+.+
T Consensus 330 ~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 330 L-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred c-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 4 66566778889999999999766 65455678889999999998765 22 234567788888764
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.8e-16 Score=143.92 Aligned_cols=161 Identities=27% Similarity=0.254 Sum_probs=135.5
Q ss_pred CCCCccEEEeccCccccccchhhhh-cCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccc
Q 039778 269 SRKNIIALDISYNKLQGHIPVEIGK-VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL 347 (459)
Q Consensus 269 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 347 (459)
....++.|++++|.+. .++...+. .+++|+.|++++|.+....+..|..+++|+.|++++|.+. .++...+..+++|
T Consensus 37 ~~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 114 (361)
T 2xot_A 37 LPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQAL 114 (361)
T ss_dssp CCTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTC
T ss_pred CCCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCC
Confidence 3456899999999998 45444443 5899999999999999877788999999999999999998 7777777789999
Q ss_pred ceeeccccccccccccccccccCCceEEccCCcccCCCcccc---cccCCCcEEEcccccccCCCcccccCccc--ccEE
Q 039778 348 EYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESL---SNCSSLQGLYISDNDITGSIPTWIGNISF--LDAI 422 (459)
Q Consensus 348 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L 422 (459)
++|++++|++....+..|..+++|++|++++|.+....+..+ ..+++|+.|++++|.+....+..+..++. ++.|
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence 999999999998888899999999999999999986555545 56899999999999999555567777776 4889
Q ss_pred EcCCCcccC
Q 039778 423 IMPDNHLEG 431 (459)
Q Consensus 423 ~l~~~~~~~ 431 (459)
+|++|.+.+
T Consensus 195 ~l~~N~~~C 203 (361)
T 2xot_A 195 YLHNNPLEC 203 (361)
T ss_dssp ECCSSCEEC
T ss_pred EecCCCccC
Confidence 999998863
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.7e-16 Score=126.16 Aligned_cols=136 Identities=24% Similarity=0.246 Sum_probs=101.3
Q ss_pred CCCcEEEccCCccc-cccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEE
Q 039778 320 NSLIYLDLSNNQLT-GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGL 398 (459)
Q Consensus 320 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 398 (459)
++|+.|++++|.++ +.++.. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56777777777765 345544 34577888888888887754 667778888888888888876666666678888888
Q ss_pred EcccccccCCC-cccccCcccccEEEcCCCcccCCCc---hhhcCCCcccEEeccCCcccccCCC
Q 039778 399 YISDNDITGSI-PTWIGNISFLDAIIMPDNHLEGPIP---SEFCQLDYLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 399 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~p~ 459 (459)
++++|.+.+.. +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+. ++|+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 88888887432 2677788888888888888884443 36788888888888888877 5653
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.6e-17 Score=146.58 Aligned_cols=290 Identities=11% Similarity=0.041 Sum_probs=163.8
Q ss_pred CCCCCcEEecCCCccCCCCcccccccC-CCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccC--
Q 039778 120 GLRKLRFLDLSGLRIRDGSKVLHSIGS-FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLAN-- 196 (459)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-- 196 (459)
.++++++|.+++.-... ....+.. +++|+.|++++|++....... ...+.++.+....+. ....+|..
T Consensus 23 ~~~~l~~L~l~g~i~~~---~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~---I~~~aF~~~~ 93 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAE---DFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANF---VPAYAFSNVV 93 (329)
T ss_dssp HHHHCSEEEEEEEECHH---HHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTE---ECTTTTEEEE
T ss_pred hhCceeEEEEeccccHH---HHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccc---cCHHHhcccc
Confidence 35678888887642211 1122333 788999999999876221111 111223334333332 23345666
Q ss_pred ------CCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc-----cccCCccc
Q 039778 197 ------LTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN-----SLSGPFRL 265 (459)
Q Consensus 197 ------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~ 265 (459)
|++|+++++.+ .+. .+....+..+++|+.+++..+.+. ......|..+..+..+.... ........
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 88888888888 555 566777888888888888877654 22223333333222222111 00000011
Q ss_pred CcCCCCCcc-EEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcc
Q 039778 266 PTRSRKNII-ALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 344 (459)
Q Consensus 266 ~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 344 (459)
.+..+..|+ .+.+.... .++..+.. .-....+++.+.+.+.-.. .....+...+
T Consensus 171 ~f~~~~~L~~~i~~~~~~---~l~~~~~~---------------------~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~ 225 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG---KLEDEIMK---------------------AGLQPRDINFLTIEGKLDN-ADFKLIRDYM 225 (329)
T ss_dssp CEEESCCCEEEEEECTTC---CHHHHHHH---------------------TTCCGGGCSEEEEEECCCH-HHHHHHHHHC
T ss_pred ccccccccceeEEecCCC---cHHHHHhh---------------------cccCccccceEEEeeeecH-HHHHHHHHhc
Confidence 112222332 12221110 11111111 0012245566666554221 2222333347
Q ss_pred cccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCc-EEEcccccccCCCcccccCcccccEEE
Q 039778 345 FNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ-GLYISDNDITGSIPTWIGNISFLDAII 423 (459)
Q Consensus 345 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~ 423 (459)
++|+.+++++|+++.....+|..+++|+++++.++ +..+.+.+|..+.+|+ .+.+.+ .+....+.+|..+++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 78888888888777767777888888888888776 6666667788888888 888877 66645567788888888888
Q ss_pred cCCCcccCCCchhhcCCCcccEEec
Q 039778 424 MPDNHLEGPIPSEFCQLDYLEILDL 448 (459)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~L~~L~l 448 (459)
++++.+....+..|..+++|+.|+.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 8888777555667788888887753
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=2.4e-16 Score=129.23 Aligned_cols=131 Identities=19% Similarity=0.165 Sum_probs=79.9
Q ss_pred cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778 299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG 378 (459)
Q Consensus 299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 378 (459)
+.++++++.+.. ++..+. ++++.|++++|.+.+..+..++..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 456666666643 233222 26667777776665222223344566666666666666665566666666666666666
Q ss_pred CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCC
Q 039778 379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGP 432 (459)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 432 (459)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 666655555566666666666666666655566666666666666666666643
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=2.1e-15 Score=121.01 Aligned_cols=136 Identities=21% Similarity=0.214 Sum_probs=82.6
Q ss_pred CccccEEEecccccc--C-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcE
Q 039778 25 LSSLKNLSLAYNRLE--G-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEE 101 (459)
Q Consensus 25 ~~~L~~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 101 (459)
.++|++|++++|.+. . +..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.... ...+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL-DMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCC-CHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHH-HHHHhhCCCCCE
Confidence 356677777666655 2 22346666777777777666543 55666677777777766665322 224445677777
Q ss_pred EECcccccCCccCcccccCCCCCcEEecCCCccCCCCccc-ccccCCCcccEEEccCCccccc
Q 039778 102 LDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSIGSFPSLKTLYLKSNNFAKT 163 (459)
Q Consensus 102 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 163 (459)
|++++|.+........+..+++|++|++++|.+....... ..+..+++|+.|++++|.....
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 7777777666532356667777777777777666531100 2566677777777777665443
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=2.8e-15 Score=121.29 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=67.0
Q ss_pred cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778 299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG 378 (459)
Q Consensus 299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 378 (459)
+.++++++.+.... ..+ .++|+.|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCC-CCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555554322 111 235566666666555 44444444455666666666655544444455555566666665
Q ss_pred CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccC
Q 039778 379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG 431 (459)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (459)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 55554444444555555566665555553333334455555555555555553
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.2e-15 Score=119.74 Aligned_cols=128 Identities=23% Similarity=0.259 Sum_probs=89.0
Q ss_pred CCCcEEEccCCccc-cccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEE
Q 039778 320 NSLIYLDLSNNQLT-GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGL 398 (459)
Q Consensus 320 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 398 (459)
++|+.|++++|.+. +.++. .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45667777777665 34444 234467777777777776654 566677788888888888776566666667788888
Q ss_pred EcccccccCC-CcccccCcccccEEEcCCCcccCCCc---hhhcCCCcccEEeccC
Q 039778 399 YISDNDITGS-IPTWIGNISFLDAIIMPDNHLEGPIP---SEFCQLDYLEILDLSK 450 (459)
Q Consensus 399 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~ 450 (459)
++++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888887742 23667778888888888888875444 4577788888887764
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=5.1e-15 Score=121.14 Aligned_cols=127 Identities=23% Similarity=0.208 Sum_probs=78.5
Q ss_pred cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778 299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG 378 (459)
Q Consensus 299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 378 (459)
+.++++++.+... +..+. ++|+.|++++|.++ .++. .+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGIP--RDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSC-CSCCC--TTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcC-CCCCC--CCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 4566666665532 22222 46677777777666 5553 344566677777777766665556666666777777777
Q ss_pred CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7666655556666666777777776666433445666666666666666665
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=2.1e-15 Score=123.60 Aligned_cols=174 Identities=24% Similarity=0.290 Sum_probs=130.8
Q ss_pred ccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCC-cccCCCCCcEEEccCCccccccchhHHhcccccceee
Q 039778 273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS-SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL 351 (459)
Q Consensus 273 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 351 (459)
-++++++++.+. .+|..+ .++++.|++++|.+...... .+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEE
Confidence 378999999886 777654 35899999999999866654 4889999999999999998 55445556799999999
Q ss_pred ccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcc-cccCcccccEEEcCCCccc
Q 039778 352 LSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPT-WIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 352 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 430 (459)
+++|++.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++....+- .+. ..++...+.+....
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~ 162 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAAR 162 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCB
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCC
Confidence 999999988888899999999999999999988888899999999999999998854431 111 11222234444444
Q ss_pred CCCchhhcCCCcccEEeccCCccccc
Q 039778 431 GPIPSEFCQLDYLEILDLSKNNIAGS 456 (459)
Q Consensus 431 ~~~~~~~~~~~~L~~L~l~~~~~~~~ 456 (459)
+..|..+ ......++..+.+.+.
T Consensus 163 C~~P~~l---~~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 163 CGAPSKV---RDVQIKDLPHSEFKCS 185 (192)
T ss_dssp BCSSTTT---TTSBGGGSCTTTCCCC
T ss_pred CCCChHH---cCCChhhCcHhhcCcC
Confidence 4555544 3344456666666544
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.4e-15 Score=117.97 Aligned_cols=127 Identities=24% Similarity=0.276 Sum_probs=56.4
Q ss_pred ccccEEEecccccc--C-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778 26 SSLKNLSLAYNRLE--G-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL 102 (459)
Q Consensus 26 ~~L~~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 102 (459)
++|++|++++|.+. . +..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+.. ...+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCT-HHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchH-HHHhhhCCCCCEE
Confidence 44555555544443 1 22234445555555555544432 34444555555555555444222 1133334555555
Q ss_pred ECcccccCCccCcccccCCCCCcEEecCCCccCCCCccc-ccccCCCcccEEEc
Q 039778 103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSIGSFPSLKTLYL 155 (459)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l 155 (459)
++++|.+.....+..+..+++|++|++++|.+....... ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555444322244455555555555555444321100 13444555555544
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=8.8e-14 Score=127.05 Aligned_cols=270 Identities=10% Similarity=0.141 Sum_probs=145.8
Q ss_pred cCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCc
Q 039778 70 ALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPS 149 (459)
Q Consensus 70 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 149 (459)
.+..++.+.+.+. +. .++..+|..+ +|+.+.+..+ +..+. ..++..+ .|+.+.+.. .+... -..+|.+|++
T Consensus 111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~-~~aF~~~-~L~~i~lp~-~l~~I--~~~aF~~c~~ 181 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIG-DMAFFNS-TVQEIVFPS-TLEQL--KEDIFYYCYN 181 (401)
T ss_dssp ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEEC-TTTTTTC-CCCEEECCT-TCCEE--CSSTTTTCTT
T ss_pred ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEEC-HHhcCCC-CceEEEeCC-CccEe--hHHHhhCccc
Confidence 3455555555443 11 3444455553 4666665544 33332 2334442 466666654 22221 2234566666
Q ss_pred ccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEE
Q 039778 150 LKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLL 229 (459)
Q Consensus 150 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 229 (459)
|+.+++.++.+....... +. +.+|+.+.+..+ +..+...+|.+|++|+++.+.++ +. .+....+.. .+|+.+.
T Consensus 182 L~~l~l~~n~l~~I~~~a--F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 182 LKKADLSKTKITKLPAST--FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CCEEECTTSCCSEECTTT--TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEE
T ss_pred CCeeecCCCcceEechhh--Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEE
Confidence 666666666555444332 22 456777777533 45555667777777888877663 22 344455555 5677777
Q ss_pred eecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCC
Q 039778 230 LSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFN 309 (459)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 309 (459)
+..+-.. .. ...+..|.+|+.+.+.++.... +...
T Consensus 255 lp~~i~~--I~-----------------------~~aF~~c~~L~~l~l~~~~~~~--------------------~~~~ 289 (401)
T 4fdw_A 255 LPNGVTN--IA-----------------------SRAFYYCPELAEVTTYGSTFND--------------------DPEA 289 (401)
T ss_dssp EETTCCE--EC-----------------------TTTTTTCTTCCEEEEESSCCCC--------------------CTTC
T ss_pred eCCCccE--EC-----------------------hhHhhCCCCCCEEEeCCccccC--------------------Cccc
Confidence 7443100 00 1122333444444444332210 0001
Q ss_pred CCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccc
Q 039778 310 GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESL 389 (459)
Q Consensus 310 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 389 (459)
......|.+|++|+.+.+.+ .+. .++..+|.+|++|+.+.+..+ +......+|..+ +|+.+++.++.........|
T Consensus 290 ~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp EECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred EECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence 23345667777777777773 355 666677777777777777544 444456677777 77777777777665555566
Q ss_pred cccC-CCcEEEccccc
Q 039778 390 SNCS-SLQGLYISDND 404 (459)
Q Consensus 390 ~~~~-~L~~L~l~~~~ 404 (459)
..++ +++.|.+-.+.
T Consensus 366 ~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 366 YGFPDDITVIRVPAES 381 (401)
T ss_dssp CCSCTTCCEEEECGGG
T ss_pred cCCCCCccEEEeCHHH
Confidence 6653 56777776654
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.1e-13 Score=126.46 Aligned_cols=269 Identities=10% Similarity=0.123 Sum_probs=189.0
Q ss_pred cCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCc
Q 039778 94 DSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL 173 (459)
Q Consensus 94 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 173 (459)
..+..++.+.+.+. +..+. ..++..+ +|+.+.+..+ +... -..+|.+ .+|+.+.+.. .+..+... .+..|
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~-~~aF~~~-~L~~i~l~~~-i~~I--~~~aF~~-~~L~~i~lp~-~l~~I~~~--aF~~c 179 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIP-KDAFRNS-QIAKVVLNEG-LKSI--GDMAFFN-STVQEIVFPS-TLEQLKED--IFYYC 179 (401)
T ss_dssp EECSSCSEEECCTT-CCEEC-TTTTTTC-CCSEEECCTT-CCEE--CTTTTTT-CCCCEEECCT-TCCEECSS--TTTTC
T ss_pred EecCCccEEEECCc-cCEeh-HhhcccC-CccEEEeCCC-ccEE--CHHhcCC-CCceEEEeCC-CccEehHH--HhhCc
Confidence 34578888888664 44443 4556665 7999998865 3321 2234555 4699999876 34333333 58889
Q ss_pred ccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceee
Q 039778 174 VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIF 253 (459)
Q Consensus 174 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~ 253 (459)
++|+.+++.++.+......+|. +.+|+++.+.++ +. .+....+.++++|+.+.+..+- .
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l-~----------------- 238 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENV-S----------------- 238 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTC-C-----------------
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCc-c-----------------
Confidence 9999999999888877777777 689999999864 43 5667788899999988886541 1
Q ss_pred ecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccc
Q 039778 254 HANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLT 333 (459)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 333 (459)
.+....+.. .+|+.+.+. +.+.......|.+|++|+.+.+.++...
T Consensus 239 --------------------------------~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 239 --------------------------------TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp --------------------------------EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred --------------------------------Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 111112221 344555552 2233344566777777777777765442
Q ss_pred ----cccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCC
Q 039778 334 ----GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409 (459)
Q Consensus 334 ----~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 409 (459)
..++...|.+|++|+.+.+.+ .+......+|..+++|+.+.+..+ +..+...+|.++ +|+++.+.+|......
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 147788888999999999984 576667789999999999999665 666677889999 9999999999877555
Q ss_pred cccccCcc-cccEEEcCCCccc
Q 039778 410 PTWIGNIS-FLDAIIMPDNHLE 430 (459)
Q Consensus 410 ~~~~~~~~-~L~~L~l~~~~~~ 430 (459)
...|..++ ++..|.+..+.+.
T Consensus 362 ~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CSSCCCSCTTCCEEEECGGGHH
T ss_pred cccccCCCCCccEEEeCHHHHH
Confidence 56777774 7889998877654
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=4.2e-17 Score=155.78 Aligned_cols=183 Identities=17% Similarity=0.217 Sum_probs=142.0
Q ss_pred CCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCc-------------CCCCCCCcccCCCCCcEEE-ccCCccc
Q 039778 268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNA-------------FNGSIPSSFGDMNSLIYLD-LSNNQLT 333 (459)
Q Consensus 268 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~ 333 (459)
..++.|+.|+++++.+. .+|..+.. +++|+.|+++++. ..+..+..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45788999999999887 78887776 7888888875543 2333445566677788887 5555443
Q ss_pred cccchhHHh-------cccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778 334 GEIPEHLAM-------GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 334 ~~~~~~~~~-------~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 406 (459)
.++..... ....|+.|++++|.+++ ++. ++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 22221110 13468899999999986 344 888999999999999988 67888999999999999999998
Q ss_pred CCCcccccCcccccEEEcCCCcccCCC-chhhcCCCcccEEeccCCcccccCC
Q 039778 407 GSIPTWIGNISFLDAIIMPDNHLEGPI-PSEFCQLDYLEILDLSKNNIAGSLP 458 (459)
Q Consensus 407 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~p 458 (459)
+ +| .+..+++|+.|+|++|.+.+.. |..+..+++|+.|+|++|++++..|
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 4 66 7889999999999999999665 8899999999999999999986544
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=7.6e-16 Score=151.85 Aligned_cols=181 Identities=26% Similarity=0.245 Sum_probs=112.6
Q ss_pred CCccEEEeccCccccccchhhhhcCCCccEEEe-----ecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccc
Q 039778 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSI-----TFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF 345 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L-----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 345 (459)
+.++.|++.++.+.. .+..... ...|+.+.+ ..+.+. ..+..+..++.|+.|+|++|.+. .++..++ .++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCC
T ss_pred CccceEEeeCCCCCc-chhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCC
Confidence 456677777666653 2322221 222222222 222222 34566778889999999999887 7887776 589
Q ss_pred ccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcC
Q 039778 346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP 425 (459)
Q Consensus 346 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 425 (459)
+|++|+|++|.++ .++..+..+++|++|+|++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 9999999999988 67778888999999999999988 66888888999999999999887 778888899999999999
Q ss_pred CCcccCCCchhhcCCC-cccEEeccCCcccccCCC
Q 039778 426 DNHLEGPIPSEFCQLD-YLEILDLSKNNIAGSLPS 459 (459)
Q Consensus 426 ~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~p~ 459 (459)
+|.+++.+|..+.... .+..+++++|.+++.+|+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 9999877777665432 222466777777777764
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=4.5e-15 Score=119.90 Aligned_cols=133 Identities=15% Similarity=0.165 Sum_probs=81.7
Q ss_pred ccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCC
Q 039778 316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL 395 (459)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 395 (459)
+..+++|+.|++++|.+. .++. +....++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 344556666666666665 4432 233234677777777766643 456666777777777777664433444666777
Q ss_pred cEEEcccccccCCCcc--cccCcccccEEEcCCCcccCCCchh----hcCCCcccEEeccCCccc
Q 039778 396 QGLYISDNDITGSIPT--WIGNISFLDAIIMPDNHLEGPIPSE----FCQLDYLEILDLSKNNIA 454 (459)
Q Consensus 396 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~ 454 (459)
++|++++|.+. .+|. .+..+++|+.|++++|++. .+|.. +..+++|+.|++++|+..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777665 4444 5666677777777777766 44443 666677777777766543
No 134
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.54 E-value=9.5e-13 Score=120.91 Aligned_cols=155 Identities=10% Similarity=0.086 Sum_probs=71.8
Q ss_pred ccccCc-cCceEEcCCCCCCcccccccccCCCCcEEEccCCc--ceeeeccccccCCCCCcEEECcccccCCccCccccc
Q 039778 43 NIEGMN-MLESLDLSGNKFNSSILSSLTALSSLRKLNLMATG--FKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119 (459)
Q Consensus 43 ~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 119 (459)
+|.++. .|+.+.+... ++.+...+|.+|.+|+.+.+..+. ....++..+|..|.+|+.+.+..+ +..+. ..++.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~-~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID-SEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC-TTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh-hhhhh
Confidence 444442 3555555433 444445555555555555554321 112344445555555555554332 22221 23455
Q ss_pred CCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCC
Q 039778 120 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTS 199 (459)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 199 (459)
.+..|+.+.+......- ....+..+..|+.+.+..+ +...... ++. ...|+.+.+... +......++..+..
T Consensus 135 ~c~~L~~i~lp~~~~~I---~~~~F~~c~~L~~i~~~~~-~~~I~~~--aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTSV---ADGMFSYCYSLHTVTLPDS-VTAIEER--AFT-GTALTQIHIPAK-VTRIGTNAFSECFA 206 (394)
T ss_dssp TCTTCCEEECCTTCCEE---CTTTTTTCTTCCEEECCTT-CCEECTT--TTT-TCCCSEEEECTT-CCEECTTTTTTCTT
T ss_pred hhcccccccccceeeee---cccceecccccccccccce-eeEeccc--ccc-ccceeEEEECCc-ccccccchhhhccc
Confidence 55556655554322110 1224455566666665433 1111111 122 245666666443 22334456667777
Q ss_pred CcEEEcCCC
Q 039778 200 LRVLHVPDN 208 (459)
Q Consensus 200 L~~L~l~~~ 208 (459)
++.......
T Consensus 207 l~~~~~~~~ 215 (394)
T 4gt6_A 207 LSTITSDSE 215 (394)
T ss_dssp CCEEEECCS
T ss_pred cceeccccc
Confidence 777665544
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=3.1e-16 Score=149.85 Aligned_cols=196 Identities=19% Similarity=0.207 Sum_probs=133.9
Q ss_pred cCCccccEEEeccccccC-CcccccCccCceEEcCCCC-------------CCcccccccccCCCCcEEE-ccCCcceee
Q 039778 23 AGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNK-------------FNSSILSSLTALSSLRKLN-LMATGFKGT 87 (459)
Q Consensus 23 ~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~ 87 (459)
..+++|+.|+++++.+.. +..+.++++|++|+++++. .....+..+..+++|+.|+ +..+... .
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-D 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-H
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-h
Confidence 346777777777777655 4456777777777776553 2334455566777777776 3333221 1
Q ss_pred ecc-----ccccC--CCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcc
Q 039778 88 FDV-----QELDS--LSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160 (459)
Q Consensus 88 ~~~-----~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (459)
... ..+.. ...|+.|++++|.+..+ |. +..+++|+.|++++|.+.. +|..++.+++|+.|++++|.+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l--p~-~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CH-LEQLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC--CC-GGGGTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSSCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCC--cC-ccccccCcEeecCcccccc---cchhhhcCCCCCEEECCCCCC
Confidence 100 01111 13588888888888876 44 8888888888888888874 777888888888888888888
Q ss_pred cccccccccccCcccccEEEcccccccccc-chhccCCCCCcEEEcCCCcCcCcCCC--CcccCCCcccEEE
Q 039778 161 AKTVTTTQGLCELVHLQDLYIDRNDFIGSL-PWCLANLTSLRVLHVPDNQLTGNLSS--SPLMHLTSIEVLL 229 (459)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~ 229 (459)
...+ .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+..+. .....+|+|+.|+
T Consensus 499 ~~lp----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 499 ENVD----GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCG----GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCc----ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 7642 4777888888888888888765 77888888888888888887643221 1233467777775
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.51 E-value=3.2e-12 Score=117.37 Aligned_cols=208 Identities=9% Similarity=0.116 Sum_probs=126.6
Q ss_pred cccccchhhhcCCc-cccEEEeccc-cccCCcccccCccCceEEcCCCC---CCcccccccccCCCCcEEEccCCcceee
Q 039778 13 SFNNSVLSSLAGLS-SLKNLSLAYN-RLEGSINIEGMNMLESLDLSGNK---FNSSILSSLTALSSLRKLNLMATGFKGT 87 (459)
Q Consensus 13 ~~~~~~~~~~~~~~-~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 87 (459)
.++.+...+|.+++ .|+++.+..+ .-.+..+|.+|.+|+.+.+..+. ++.+...+|.+|.+|+.+.+... + ..
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~-~~ 127 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-V-TE 127 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-C-SE
T ss_pred eeeEcCHhhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-c-ce
Confidence 35667778888875 5899998765 22346788899999999887653 66667788889999998887654 2 25
Q ss_pred eccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccccccccc
Q 039778 88 FDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 167 (459)
Q Consensus 88 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 167 (459)
++..++..+.+|+.+.+... +..+. ..++..+..|+.+.+..+-. . +.........|+.+.+...... . ..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~-~~~F~~c~~L~~i~~~~~~~-~---I~~~aF~~~~l~~i~ip~~~~~-i--~~ 198 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVA-DGMFSYCYSLHTVTLPDSVT-A---IEERAFTGTALTQIHIPAKVTR-I--GT 198 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEECCTTCC-E---ECTTTTTTCCCSEEEECTTCCE-E--CT
T ss_pred ehhhhhhhhcccccccccce-eeeec-ccceecccccccccccceee-E---eccccccccceeEEEECCcccc-c--cc
Confidence 66667888899999988654 23332 45677888888888875422 1 2222223456787777544221 1 12
Q ss_pred ccccCcccccEEEccccccccccc-------------hhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecc
Q 039778 168 QGLCELVHLQDLYIDRNDFIGSLP-------------WCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233 (459)
Q Consensus 168 ~~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (459)
..+..+..++.............. ..+.....+..+.+.+. +. .+....+..+..|+.+.+...
T Consensus 199 ~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 199 NAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp TTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTT
T ss_pred chhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccc
Confidence 245566677766554432211100 01112234445554332 11 333556777888888777543
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=112.16 Aligned_cols=128 Identities=24% Similarity=0.283 Sum_probs=104.0
Q ss_pred ccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeec
Q 039778 273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 352 (459)
Q Consensus 273 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 352 (459)
-+.++++++.+. .+|..+ .++++.|++++|.+. ..+..+..+++|+.|++++|.++ .++...+..+++|++|++
T Consensus 12 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEEC
Confidence 367888888877 666543 468899999999887 44577888889999999999888 666666677889999999
Q ss_pred cccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778 353 SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 353 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 406 (459)
++|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++|++.
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999988877778888899999999999888666667888889999999998875
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.6e-13 Score=110.95 Aligned_cols=133 Identities=24% Similarity=0.270 Sum_probs=98.4
Q ss_pred CccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceee
Q 039778 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL 351 (459)
Q Consensus 272 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 351 (459)
..+.++++++.+. .+|..+ .++++.|++++|.+.......+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILY 82 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEE
Confidence 3567777777766 555432 467888888888887666666777888888888888887 66666666688888888
Q ss_pred ccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCC
Q 039778 352 LSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409 (459)
Q Consensus 352 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 409 (459)
+++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|++....
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8888887666666777888888888888877655555677788888888888877443
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=7.4e-14 Score=112.69 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=106.2
Q ss_pred hcCCccccEEEeccccccCCcccccCc-cCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCc
Q 039778 22 LAGLSSLKNLSLAYNRLEGSINIEGMN-MLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLE 100 (459)
Q Consensus 22 ~~~~~~L~~L~l~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 100 (459)
+..+.+|+.|++++|.+.....+..+. +|++|++++|.++.. ..+..+++|++|++++|.+. .++...+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCC
Confidence 456788999999999887755566555 899999999988754 67888999999999999887 45544567889999
Q ss_pred EEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccc----cccCCCcccEEEccCCccc
Q 039778 101 ELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH----SIGSFPSLKTLYLKSNNFA 161 (459)
Q Consensus 101 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~ 161 (459)
+|++++|.+..+.....+..+++|+.|++++|.+.. .+. .+..+++|+.|+++++...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~---~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN---KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG---STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC---cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999998776322378889999999999998875 344 3778899999999888764
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=3.9e-14 Score=139.68 Aligned_cols=157 Identities=23% Similarity=0.268 Sum_probs=103.0
Q ss_pred CCCccEEEeecCcCCCCCCCcccCCCCCcEEE-----ccCCccccccchhHHhcccccceeecccccccccccccccccc
Q 039778 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLD-----LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLT 369 (459)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~-----l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 369 (459)
.+..+.+.+..+.+.... ..+.....|..+. +..+.+. ++...+..+++|+.|++++|.+. .++..+..++
T Consensus 172 ~~~~~~l~L~~n~~~~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEAN-QALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred CCccceEEeeCCCCCcch-hhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence 356778888777776432 2222222233322 2233332 34455667899999999999998 4555566899
Q ss_pred CCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEecc
Q 039778 370 KLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS 449 (459)
Q Consensus 370 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 449 (459)
+|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..|..+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 9999999999998 77888999999999999999999 88999999999999999999998 889889999999999999
Q ss_pred CCcccccCC
Q 039778 450 KNNIAGSLP 458 (459)
Q Consensus 450 ~~~~~~~~p 458 (459)
+|++++.+|
T Consensus 325 ~N~l~~~~p 333 (727)
T 4b8c_D 325 GNPLEKQFL 333 (727)
T ss_dssp TSCCCSHHH
T ss_pred CCccCCCCh
Confidence 999998766
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.5e-15 Score=125.21 Aligned_cols=132 Identities=21% Similarity=0.270 Sum_probs=62.3
Q ss_pred cccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCC
Q 039778 315 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSS 394 (459)
Q Consensus 315 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 394 (459)
.+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+ .+ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 3444455555555555554 233 2233555555555555554 233333444555555555555443 22 3444555
Q ss_pred CcEEEcccccccCCCc-ccccCcccccEEEcCCCcccCCCch----------hhcCCCcccEEeccCCccc
Q 039778 395 LQGLYISDNDITGSIP-TWIGNISFLDAIIMPDNHLEGPIPS----------EFCQLDYLEILDLSKNNIA 454 (459)
Q Consensus 395 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~~~~ 454 (459)
|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|. .+..+++|+.|+ +++++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 5555555555542111 2444555555555555555433222 144555565554 44444
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=3.7e-15 Score=134.84 Aligned_cols=185 Identities=14% Similarity=0.047 Sum_probs=112.5
Q ss_pred CCCccEEEeccCccccccchhhhh----cCCCccEEEeecCcCCCCCCCcc-cCCCCCcEEEccCCccccccchhHHh--
Q 039778 270 RKNIIALDISYNKLQGHIPVEIGK----VLPNLGFLSITFNAFNGSIPSSF-GDMNSLIYLDLSNNQLTGEIPEHLAM-- 342 (459)
Q Consensus 270 ~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~-- 342 (459)
.+.|++|++++|.+++.....+.. ..++|+.|+|++|.+.+.....+ ..+++|+.|++++|.+++.....+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467888888888876433333322 23578888888887764322222 23457888888888876444433332
Q ss_pred --cccccceeecccccccccc----ccccccccCCceEEccCCcccCCC----cccccccCCCcEEEcccccccCCC---
Q 039778 343 --GCFNLEYLLLSNNSLQGQL----FSKKNNLTKLKRLNLDGNHFIGDI----PESLSNCSSLQGLYISDNDITGSI--- 409 (459)
Q Consensus 343 --~~~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~--- 409 (459)
..++|++|++++|.+++.. ..++...++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3467888888888776532 334456778888888888776443 344566678888888888776532
Q ss_pred -cccccCcccccEEEcCCCcccCCCchhhcCC---Cc--ccEEe--ccCCccc
Q 039778 410 -PTWIGNISFLDAIIMPDNHLEGPIPSEFCQL---DY--LEILD--LSKNNIA 454 (459)
Q Consensus 410 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~--L~~L~--l~~~~~~ 454 (459)
+..+...++|+.|+|++|.+.+.....+..+ .. |+.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 2344456778888888888775444444322 21 66666 5555543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.9e-12 Score=103.54 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=84.4
Q ss_pred CCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEc
Q 039778 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYI 400 (459)
Q Consensus 321 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 400 (459)
..+.++++++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3578888888887 677654 368888888888888777777888888888888888888666666778888888888
Q ss_pred ccccccCCCcccccCcccccEEEcCCCcccC
Q 039778 401 SDNDITGSIPTWIGNISFLDAIIMPDNHLEG 431 (459)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (459)
++|.+.+..+..+..+++|+.|+|++|.+.+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8888885555567788888888888888773
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=2.7e-14 Score=117.71 Aligned_cols=150 Identities=21% Similarity=0.285 Sum_probs=115.6
Q ss_pred CccEEEeccCccccccc------hhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccc
Q 039778 272 NIIALDISYNKLQGHIP------VEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF 345 (459)
Q Consensus 272 ~L~~L~l~~~~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 345 (459)
.++.++++.+.+.+..| ..+.. +++|+.|++++|.+.. .+ .+..+++|+.|++++|.+. .++.. +..++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~-~~~~~ 93 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL-DAVAD 93 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH-HHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch-hhcCC
Confidence 34444444444444433 34444 9999999999999986 34 7888999999999999998 77764 34579
Q ss_pred ccceeeccccccccccccccccccCCceEEccCCcccCCCc-ccccccCCCcEEEcccccccCCCcc----------ccc
Q 039778 346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIP-ESLSNCSSLQGLYISDNDITGSIPT----------WIG 414 (459)
Q Consensus 346 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~ 414 (459)
+|++|++++|++++. ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|. .+.
T Consensus 94 ~L~~L~L~~N~l~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcC--CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 999999999999863 368889999999999999885433 4678899999999999998755443 367
Q ss_pred CcccccEEEcCCCccc
Q 039778 415 NISFLDAIIMPDNHLE 430 (459)
Q Consensus 415 ~~~~L~~L~l~~~~~~ 430 (459)
.+++|+.|+ ++.+.
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 889999876 66665
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=4e-14 Score=128.05 Aligned_cols=161 Identities=17% Similarity=0.123 Sum_probs=114.9
Q ss_pred CCCccEEEeecCcCCCCCCCcc----c-CCCCCcEEEccCCccccccchhHHhcccccceeecccccccccccccc----
Q 039778 295 LPNLGFLSITFNAFNGSIPSSF----G-DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK---- 365 (459)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~---- 365 (459)
.+.++.|++++|.+.......+ . ..++|+.|++++|.+++.....+...+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5778889998888864332222 2 236888999998888765556666667788999999988876544443
Q ss_pred -ccccCCceEEccCCcccCCC----cccccccCCCcEEEcccccccCCC----cccccCcccccEEEcCCCcccCC----
Q 039778 366 -NNLTKLKRLNLDGNHFIGDI----PESLSNCSSLQGLYISDNDITGSI----PTWIGNISFLDAIIMPDNHLEGP---- 432 (459)
Q Consensus 366 -~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~---- 432 (459)
...++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.. +..+...++|+.|+|++|.+.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 23578899999998876433 333466788999999998877532 45566677899999999888753
Q ss_pred CchhhcCCCcccEEeccCCcccc
Q 039778 433 IPSEFCQLDYLEILDLSKNNIAG 455 (459)
Q Consensus 433 ~~~~~~~~~~L~~L~l~~~~~~~ 455 (459)
++..+...++|+.|+|++|+|+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 33445567888999999988864
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=4e-12 Score=101.57 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=86.1
Q ss_pred ccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEcc
Q 039778 298 LGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLD 377 (459)
Q Consensus 298 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 377 (459)
.+.++++++.+... +..+ .++|+.|++++|.++ .++...+..+++|++|++++|++.+..+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 46888888888753 3333 268999999999998 5655556678999999999999987777778889999999999
Q ss_pred CCcccCCCcccccccCCCcEEEcccccccC
Q 039778 378 GNHFIGDIPESLSNCSSLQGLYISDNDITG 407 (459)
Q Consensus 378 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 407 (459)
+|.+....+..+..+++|++|++++|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999887766678888999999999998873
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=7e-12 Score=100.50 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=87.5
Q ss_pred CcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcc
Q 039778 322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYIS 401 (459)
Q Consensus 322 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 401 (459)
-+.++++++.+. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 378899999887 777754 3789999999999988778888889999999999999887666667888999999999
Q ss_pred cccccCCCcccccCcccccEEEcCCCccc
Q 039778 402 DNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
+|.+.+..+..+..+++|+.|+|++|.+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99988544456888899999999999887
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=6.9e-12 Score=100.50 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=87.2
Q ss_pred cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778 299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG 378 (459)
Q Consensus 299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 378 (459)
+.++++++.+.. ++..+. ++|+.|++++|.+. .++...+..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 688999988864 344343 78999999999998 56555666799999999999999977667788899999999999
Q ss_pred CcccCCCcccccccCCCcEEEccccccc
Q 039778 379 NHFIGDIPESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 406 (459)
|.+....+..+..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9998766666888999999999999987
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=5.1e-10 Score=102.29 Aligned_cols=291 Identities=11% Similarity=0.097 Sum_probs=165.5
Q ss_pred hhcCCccccEEEecccc-ccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCC
Q 039778 21 SLAGLSSLKNLSLAYNR-LEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNL 99 (459)
Q Consensus 21 ~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 99 (459)
++....+|+++.+...- -.+..+|.+|.+|+.+++..+ ++.+...+|.+| +|+.+.+..+ + ..++..+|..+ +|
T Consensus 41 ~~~~~~~i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l-~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNSGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-V-KKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECTTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-C-CEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCCCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-e-eEeccceeccC-Cc
Confidence 35567889999997652 235678999999999999754 666778889988 6888887644 2 24555567655 79
Q ss_pred cEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccc----------ccccc
Q 039778 100 EELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV----------TTTQG 169 (459)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------~~~~~ 169 (459)
+.+.+.++ +..+. ..++..+ .++.+.+..... .. ....+..+.+++.+.+......... .....
T Consensus 116 ~~i~lp~~-~~~i~-~~~F~~~-~l~~~~~~~~v~-~i--~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 116 DDFEFPGA-TTEIG-NYIFYNS-SVKRIVIPKSVT-TI--KDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp SEEECCTT-CCEEC-TTTTTTC-CCCEEEECTTCC-EE--CSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred ccccCCCc-ccccc-ccccccc-eeeeeeccceee-cc--ccchhcccccccccccccccceeecccceecccccceecc
Confidence 99999765 22221 2334443 566665554321 11 2234567777877776544322111 01112
Q ss_pred ccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCC
Q 039778 170 LCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSK 249 (459)
Q Consensus 170 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 249 (459)
+.....+..+.+.... .......+..+..|+.+.+... +. .+....+..+..|+.+.+..+-.. ..
T Consensus 190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~v~~--I~--------- 255 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKNVTS--IG--------- 255 (379)
T ss_dssp CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTTCCE--EC---------
T ss_pred ccccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCCccE--eC---------
Confidence 3344556666554432 2234455667888999988664 22 344566778888988887654111 00
Q ss_pred ceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccC
Q 039778 250 LKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSN 329 (459)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 329 (459)
...+..+.+|+.+.+... +. .++...+..+.+|+.+.+..+.+.......|.+|.+|+.+.+..
T Consensus 256 --------------~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 256 --------------SFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp --------------TTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred --------------ccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 122344555666655432 21 33344444455555555555544444445555555555555543
Q ss_pred CccccccchhHHhcccccceeeccc
Q 039778 330 NQLTGEIPEHLAMGCFNLEYLLLSN 354 (459)
Q Consensus 330 ~~~~~~~~~~~~~~~~~L~~L~l~~ 354 (459)
+ ++ .+...+|.+|++|+.+.+..
T Consensus 320 ~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 320 A-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp T-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred c-cc-EEHHHHhhCCCCCCEEEECC
Confidence 2 33 44445555555555555543
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.30 E-value=4.2e-10 Score=102.84 Aligned_cols=177 Identities=7% Similarity=0.059 Sum_probs=106.2
Q ss_pred CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccC
Q 039778 41 SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120 (459)
Q Consensus 41 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 120 (459)
.+.+....+|+.+.+... ++.+...+|.+|.+|+.+.+..+ +. .++..+|..+ +|+.+.+..+ +..+. ..++..
T Consensus 39 ~~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~-~~aF~~ 112 (379)
T 4h09_A 39 IPWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFG-DYVFQG 112 (379)
T ss_dssp STTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEEC-TTTTTT
T ss_pred ccccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEec-cceecc
Confidence 345677889999999764 66678889999999999999755 33 6777788887 6888877543 34432 334444
Q ss_pred CCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccccccc------------
Q 039778 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIG------------ 188 (459)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------ 188 (459)
.+|+.+.+....... ....+.++ .++.+.+..+ +..... ..+..+..++.+.+.......
T Consensus 113 -~~L~~i~lp~~~~~i---~~~~F~~~-~l~~~~~~~~-v~~i~~--~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (379)
T 4h09_A 113 -TDLDDFEFPGATTEI---GNYIFYNS-SVKRIVIPKS-VTTIKD--GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNK 184 (379)
T ss_dssp -CCCSEEECCTTCCEE---CTTTTTTC-CCCEEEECTT-CCEECS--CTTTTCTTCCEEEECTTCSSEEEETTEEEETTS
T ss_pred -CCcccccCCCccccc---cccccccc-eeeeeeccce-eecccc--chhcccccccccccccccceeecccceeccccc
Confidence 479999987653221 11233333 5666655433 211211 245667778877766542211
Q ss_pred ccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecc
Q 039778 189 SLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233 (459)
Q Consensus 189 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (459)
.....+..+..+..+.+..... .+....+..+.+++.+.+..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~ 227 (379)
T 4h09_A 185 TILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG 227 (379)
T ss_dssp SEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT
T ss_pred ceecccccccccccccccccee--EEeecccccccccceeeeccc
Confidence 1122334455666666654321 233455566777877776543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=9.2e-10 Score=99.27 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=86.4
Q ss_pred cEEEccCC-ccccccchhHHhcccccceeeccc-cccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEc
Q 039778 323 IYLDLSNN-QLTGEIPEHLAMGCFNLEYLLLSN-NSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYI 400 (459)
Q Consensus 323 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 400 (459)
..++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 34688887 787 7887 45688899999996 8998777788999999999999999998888888899999999999
Q ss_pred ccccccCCCcccccCcccccEEEcCCCcccC
Q 039778 401 SDNDITGSIPTWIGNISFLDAIIMPDNHLEG 431 (459)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (459)
++|.+....+..+..++ |+.|+|.+|.+.+
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999854444555554 9999999998873
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=4.3e-10 Score=100.72 Aligned_cols=179 Identities=18% Similarity=0.101 Sum_probs=112.3
Q ss_pred CCCCccEEEeccCccc---------cccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchh
Q 039778 269 SRKNIIALDISYNKLQ---------GHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEH 339 (459)
Q Consensus 269 ~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 339 (459)
.+++|+.|.+...... +.+. .+...+|+|+.|.++++... ..+. + ..++|+.|++..|.++......
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 3456777777543221 0122 33345889999999887322 1222 3 3689999999988877554444
Q ss_pred HHh-cccccceeecccc--ccccc-----ccccc--ccccCCceEEccCCcccCCCcccc---cccCCCcEEEccccccc
Q 039778 340 LAM-GCFNLEYLLLSNN--SLQGQ-----LFSKK--NNLTKLKRLNLDGNHFIGDIPESL---SNCSSLQGLYISDNDIT 406 (459)
Q Consensus 340 ~~~-~~~~L~~L~l~~~--~i~~~-----~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 406 (459)
+.. .+|+|++|+|+.+ ...+. +...+ ..+|+|++|++.+|.+.+..+..+ ..+++|++|+++.|.+.
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 442 5899999998632 21111 11122 357899999999988765433333 25788999999998887
Q ss_pred CCC----cccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCc
Q 039778 407 GSI----PTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN 452 (459)
Q Consensus 407 ~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 452 (459)
+.. +..+..+++|+.|+|++|.+.++....+.+.. ...+++++++
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred hHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 643 33445678999999999988755444444311 3457777665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=3e-10 Score=101.71 Aligned_cols=181 Identities=14% Similarity=0.141 Sum_probs=120.1
Q ss_pred CCccEEEeccCcccc-cc---chhh---hhcCCCccEEEeecCcCCC---------CCCCcccCCCCCcEEEccCCcccc
Q 039778 271 KNIIALDISYNKLQG-HI---PVEI---GKVLPNLGFLSITFNAFNG---------SIPSSFGDMNSLIYLDLSNNQLTG 334 (459)
Q Consensus 271 ~~L~~L~l~~~~~~~-~~---~~~~---~~~~~~L~~L~L~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~~~ 334 (459)
..++.|.+..+...+ .. ...+ ...+++|+.|.+....... .+...+..+|+|+.|.+.++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456777777655431 11 0111 2237899999996643211 12234567899999999987322
Q ss_pred ccchhHHhcccccceeeccccccccccccccc--cccCCceEEccCC--cccCC-----Ccccc--cccCCCcEEEcccc
Q 039778 335 EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKN--NLTKLKRLNLDGN--HFIGD-----IPESL--SNCSSLQGLYISDN 403 (459)
Q Consensus 335 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~~ 403 (459)
.++. . ..++|++|++..|.+.......+. .+|+|++|+|+.+ ...+. +...+ ..+++|+.|.+.+|
T Consensus 186 ~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2333 2 378999999999988765555554 6899999998632 11111 11222 25789999999999
Q ss_pred cccCCCccccc---CcccccEEEcCCCcccCC----CchhhcCCCcccEEeccCCcccc
Q 039778 404 DITGSIPTWIG---NISFLDAIIMPDNHLEGP----IPSEFCQLDYLEILDLSKNNIAG 455 (459)
Q Consensus 404 ~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 455 (459)
.+.+..+..+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|+|++|.++.
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 88754433333 478999999999998764 33344567999999999999874
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=4.3e-10 Score=101.43 Aligned_cols=103 Identities=22% Similarity=0.167 Sum_probs=87.5
Q ss_pred EEEeecC-cCCCCCCCcccCCCCCcEEEccC-CccccccchhHHhcccccceeeccccccccccccccccccCCceEEcc
Q 039778 300 FLSITFN-AFNGSIPSSFGDMNSLIYLDLSN-NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLD 377 (459)
Q Consensus 300 ~L~L~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 377 (459)
.++.+++ .+.. ++. +..+++|+.|+|++ |.+. .++...+..+++|+.|+|++|.+.+..+..|..+++|++|+|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4677777 6764 555 88899999999997 8998 7777777789999999999999998888899999999999999
Q ss_pred CCcccCCCcccccccCCCcEEEccccccc
Q 039778 378 GNHFIGDIPESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 378 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 406 (459)
+|.+....+..+..+. |+.|++.+|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999866555565554 999999999887
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.82 E-value=1.9e-09 Score=84.50 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=41.5
Q ss_pred cccEEEeccccccC--CcccccCccCceEEcCCCC-CCcccccccccC----CCCcEEEccCCcceeeeccccccCCCCC
Q 039778 27 SLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNK-FNSSILSSLTAL----SSLRKLNLMATGFKGTFDVQELDSLSNL 99 (459)
Q Consensus 27 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~~~~~~~~L 99 (459)
.|++|++++|.+.+ ...+..+++|++|+|++|. +++.....++.+ ++|++|++++|...++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555433 2234455555555555553 555444444442 3555555555543323334445555555
Q ss_pred cEEECcccc
Q 039778 100 EELDMSDNE 108 (459)
Q Consensus 100 ~~L~l~~~~ 108 (459)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=2.4e-09 Score=86.53 Aligned_cols=114 Identities=15% Similarity=0.086 Sum_probs=51.8
Q ss_pred ccCCCCCcEEEccCC-ccccccchhHH---hcccccceeecccccccccc----ccccccccCCceEEccCCcccCCC--
Q 039778 316 FGDMNSLIYLDLSNN-QLTGEIPEHLA---MGCFNLEYLLLSNNSLQGQL----FSKKNNLTKLKRLNLDGNHFIGDI-- 385 (459)
Q Consensus 316 ~~~~~~L~~L~l~~~-~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~~~~~~-- 385 (459)
+...++|++|++++| .+.+.....+. ...++|++|++++|.+.+.. ...+...++|++|+|++|.+.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344556666666666 55533222222 12345555555555554322 222233345555555555544332
Q ss_pred --cccccccCCCcEEEc--ccccccCCC----cccccCcccccEEEcCCCcc
Q 039778 386 --PESLSNCSSLQGLYI--SDNDITGSI----PTWIGNISFLDAIIMPDNHL 429 (459)
Q Consensus 386 --~~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~ 429 (459)
..++...++|++|++ ++|.+.+.. ...+...++|+.|+|++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 223344445555555 445444321 12222334455555555544
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.71 E-value=7.6e-09 Score=81.06 Aligned_cols=86 Identities=9% Similarity=-0.037 Sum_probs=58.0
Q ss_pred CCccEEEeecCcCCCCCCCcccCCCCCcEEEccCC-ccccccchhHHhc---ccccceeeccccc-cccccccccccccC
Q 039778 296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN-QLTGEIPEHLAMG---CFNLEYLLLSNNS-LQGQLFSKKNNLTK 370 (459)
Q Consensus 296 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~---~~~L~~L~l~~~~-i~~~~~~~~~~~~~ 370 (459)
..|+.|++++|.+++.....+.++++|+.|++++| .+++.....+... +++|++|++++|. |++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 35777777777776666666677777888888777 4665555555431 4567777777773 66666666666777
Q ss_pred CceEEccCCcc
Q 039778 371 LKRLNLDGNHF 381 (459)
Q Consensus 371 L~~L~l~~~~~ 381 (459)
|++|++++|+.
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 77777777763
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=9.1e-09 Score=83.14 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=53.0
Q ss_pred CCCccEEEeecC-cCCCC----CCCcccCCCCCcEEEccCCccccccchhHH---hcccccceeeccccccccc----cc
Q 039778 295 LPNLGFLSITFN-AFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLA---MGCFNLEYLLLSNNSLQGQ----LF 362 (459)
Q Consensus 295 ~~~L~~L~L~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~----~~ 362 (459)
.+.|++|+|++| .+.+. +...+...++|++|++++|.+.+.....+. ...++|++|++++|.|++. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 455555555555 55432 122334445555556655555433322221 1234555566655555542 22
Q ss_pred cccccccCCceEEc--cCCcccCCC----cccccccCCCcEEEccccccc
Q 039778 363 SKKNNLTKLKRLNL--DGNHFIGDI----PESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 363 ~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 406 (459)
.++...++|++|++ ++|.+.... ...+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 33444455555655 555554332 122334455555655555543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=2.8e-07 Score=78.08 Aligned_cols=79 Identities=25% Similarity=0.281 Sum_probs=44.6
Q ss_pred hcccccceeecccccccc--ccccccccccCCceEEccCCcccCCCcccccccC--CCcEEEcccccccCCCcc------
Q 039778 342 MGCFNLEYLLLSNNSLQG--QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCS--SLQGLYISDNDITGSIPT------ 411 (459)
Q Consensus 342 ~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~------ 411 (459)
..+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 346677777777777665 2234445667777777777766643 1222222 666666666666644331
Q ss_pred -cccCcccccEE
Q 039778 412 -WIGNISFLDAI 422 (459)
Q Consensus 412 -~~~~~~~L~~L 422 (459)
.+..+|+|+.|
T Consensus 245 ~il~~~P~L~~L 256 (267)
T 3rw6_A 245 AIRERFPKLLRL 256 (267)
T ss_dssp HHHHHCTTCCEE
T ss_pred HHHHHCcccCeE
Confidence 23345555554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=1.2e-06 Score=74.27 Aligned_cols=80 Identities=28% Similarity=0.346 Sum_probs=57.0
Q ss_pred cCCccccEEEeccccccCCcc----cccCccCceEEcCCCCCCcccccccccCC--CCcEEEccCCcceeeec------c
Q 039778 23 AGLSSLKNLSLAYNRLEGSIN----IEGMNMLESLDLSGNKFNSSILSSLTALS--SLRKLNLMATGFKGTFD------V 90 (459)
Q Consensus 23 ~~~~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~------~ 90 (459)
..+++|++|+|++|.+.+... +..+++|+.|+|++|.+... ..+..+. +|++|.+.+|.+...++ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457889999999998877443 34788999999999988754 2333333 89999999888764332 1
Q ss_pred ccccCCCCCcEEEC
Q 039778 91 QELDSLSNLEELDM 104 (459)
Q Consensus 91 ~~~~~~~~L~~L~l 104 (459)
..+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23567888888863
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.78 E-value=8.2e-06 Score=65.20 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=37.3
Q ss_pred CCCCCcEEEccCC-ccccccchhHHh---cccccceeeccccccccccc----cccccccCCceEEccCCcccCCCc---
Q 039778 318 DMNSLIYLDLSNN-QLTGEIPEHLAM---GCFNLEYLLLSNNSLQGQLF----SKKNNLTKLKRLNLDGNHFIGDIP--- 386 (459)
Q Consensus 318 ~~~~L~~L~l~~~-~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~--- 386 (459)
.-+.|+.|++.++ .+.+.....++. .-+.|+.|+|++|+|.+... +++..-+.|++|+|++|.+.....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445666666553 444332222222 22345555555555543222 222333455555555555443322
Q ss_pred -ccccccCCCcEEEccc
Q 039778 387 -ESLSNCSSLQGLYISD 402 (459)
Q Consensus 387 -~~~~~~~~L~~L~l~~ 402 (459)
.++.....|++|++++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 2223334455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.72 E-value=1.8e-05 Score=63.30 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=51.6
Q ss_pred CCCccEEEeecC-cCCCC----CCCcccCCCCCcEEEccCCccccccchhHH---hcccccceeecccccccccc----c
Q 039778 295 LPNLGFLSITFN-AFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLA---MGCFNLEYLLLSNNSLQGQL----F 362 (459)
Q Consensus 295 ~~~L~~L~L~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~----~ 362 (459)
-+.|+.|+|+++ .+.+. +...+..-+.|+.|+|++|.+.+.....+. ..-+.|++|+|+.|.|+... .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 445666666553 44421 223344445566666666665543332222 22345666666666665432 2
Q ss_pred cccccccCCceEEccCCc---ccCC----CcccccccCCCcEEEccccc
Q 039778 363 SKKNNLTKLKRLNLDGNH---FIGD----IPESLSNCSSLQGLYISDND 404 (459)
Q Consensus 363 ~~~~~~~~L~~L~l~~~~---~~~~----~~~~~~~~~~L~~L~l~~~~ 404 (459)
+++..-+.|++|+|+++. +... +..++...+.|++|+++.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 233344456666665432 1211 12233444555555555443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.54 E-value=0.0049 Score=45.80 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=42.2
Q ss_pred ceEEccCCccc-CCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778 372 KRLNLDGNHFI-GDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430 (459)
Q Consensus 372 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (459)
..++-++..++ ..+|..+. .+|++|+|++|.+....+..|..+++|+.|+|++|...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777765 24565544 46889999999988555567778889999999998776
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.80 E-value=0.019 Score=42.53 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=43.3
Q ss_pred eeeccccccc-cccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778 349 YLLLSNNSLQ-GQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406 (459)
Q Consensus 349 ~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 406 (459)
.++-++.+++ ..++..+ .++|++|+|++|.++...+..|..+++|++|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 2334333 257999999999999877778889999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.78 E-value=0.69 Score=32.11 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=31.0
Q ss_pred CCcccccchhhhcCCccccEEEecccc-ccCCcccccCccCceEEcCCC
Q 039778 11 HNSFNNSVLSSLAGLSSLKNLSLAYNR-LEGSINIEGMNMLESLDLSGN 58 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~ 58 (459)
+-.++.+...+|.+|..|+.+.|-.+- ..+..+|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcCC
Confidence 345666666777777777777776552 234556777777777777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.66 E-value=0.62 Score=32.36 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcc
Q 039778 60 FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD 106 (459)
Q Consensus 60 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 106 (459)
++.+...+|.+|.+|+.+.+..+ ...+...+|..|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 34444455555555555555443 1133444555555555555543
Done!