Your job contains 1 sequence.
>039779
FGREPIALVSSSSSQSTSVIELAAAAAAAADEDNGAECGNGNAGSKRPPWNRQPSNGAAE
MEPVMGAHSWPALSETTRGSSSSTKSSSDSLKGSVDGSSSSSVLQGTAATNSSSHKQVSN
NANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNNPSPRDHTQKSG
FGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGNQDWNSHRNYSGRD
AHMQPQRVVQRFTRHPPPPPPPPPPSSSPFIPPPPVRPFGSPIGFPEFASPVYYVAAAPP
EALRGVPFVAPIPPHAVFFPAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVP
IRLIAGFNKVSLLTDNIQLILDALRSSTVVEVQGDRIRKRNDWMRWIMPPGKFSSLPSPQ
SQGKSGIDMLSAQVQSISLDQKTLNHSRSSSGDLSNLSPTCSSAGKDQVSI
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039779
(471 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2125334 - symbol:LARP1c "La related protein 1c... 449 8.6e-73 2
TAIR|locus:2156912 - symbol:LARP1b "AT5G66100" species:37... 487 1.8e-46 1
UNIPROTKB|G3V0E9 - symbol:LARP1B "La-related protein 1B" ... 227 6.7e-17 1
WB|WBGene00020097 - symbol:larp-1 species:6239 "Caenorhab... 210 9.2e-17 2
POMBASE|SPAC1527.03 - symbol:SPAC1527.03 "RNA-binding pro... 202 2.4e-16 2
UNIPROTKB|G3XAJ5 - symbol:LARP1B "La-related protein 1B" ... 227 2.9e-16 1
UNIPROTKB|Q659C4 - symbol:LARP1B "La-related protein 1B" ... 227 8.2e-16 1
UNIPROTKB|E1BVY8 - symbol:LOC420093 "Uncharacterized prot... 174 1.1e-12 1
ASPGD|ASPL0000062948 - symbol:AN1288 species:162425 "Emer... 181 1.4e-12 3
UNIPROTKB|F1P339 - symbol:LARP1 "Uncharacterized protein"... 197 2.1e-12 1
UNIPROTKB|Q6PKG0 - symbol:LARP1 "La-related protein 1" sp... 203 2.3e-12 2
UNIPROTKB|F1P301 - symbol:SSB "Uncharacterized protein" s... 167 6.7e-12 1
UNIPROTKB|Q5ZKS1 - symbol:SSB "Uncharacterized protein" s... 167 6.7e-12 1
RGD|1306683 - symbol:Larp1 "La ribonucleoprotein domain f... 193 6.9e-12 1
MGI|MGI:1890165 - symbol:Larp1 "La ribonucleoprotein doma... 193 7.3e-12 1
UNIPROTKB|F1MZU1 - symbol:LARP1 "Uncharacterized protein"... 192 8.0e-12 1
UNIPROTKB|D6RAF3 - symbol:LARP7 "La-related protein 7" sp... 151 3.8e-10 1
UNIPROTKB|D6RF49 - symbol:LARP7 "La-related protein 7" sp... 151 3.8e-10 1
UNIPROTKB|F1NYE7 - symbol:SSB "Uncharacterized protein" s... 167 1.2e-09 1
UNIPROTKB|E7ERC4 - symbol:SSB "Lupus La protein" species:... 144 2.2e-09 1
UNIPROTKB|E9PFL9 - symbol:SSB "Lupus La protein" species:... 144 2.2e-09 1
FB|FBgn0261618 - symbol:larp "La related protein" species... 167 2.2e-09 2
FB|FBgn0035424 - symbol:CG11505 species:7227 "Drosophila ... 167 8.7e-09 1
UNIPROTKB|F1NJ86 - symbol:LARP7 "Uncharacterized protein"... 148 2.6e-08 1
TAIR|locus:2170478 - symbol:LARP6a "La related protein 6a... 150 2.8e-08 2
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp... 151 3.6e-08 1
SGD|S000000542 - symbol:SRO9 "Cytoplasmic RNA-binding pro... 117 4.2e-08 2
UNIPROTKB|F1MR14 - symbol:F1MR14 "Uncharacterized protein... 152 1.1e-07 1
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp... 151 1.4e-07 1
ZFIN|ZDB-GENE-030131-6403 - symbol:larp6 "La ribonucleopr... 148 2.3e-07 1
MGI|MGI:107634 - symbol:Larp7 "La ribonucleoprotein domai... 149 2.3e-07 1
RGD|1592474 - symbol:Larp7 "La ribonucleoprotein domain f... 149 2.3e-07 1
UNIPROTKB|Q5XI01 - symbol:Larp7 "La-related protein 7" sp... 149 2.3e-07 1
UNIPROTKB|I3LNK9 - symbol:I3LNK9 "Uncharacterized protein... 149 2.4e-07 1
UNIPROTKB|E2QW27 - symbol:LARP7 "Uncharacterized protein"... 149 2.4e-07 1
UNIPROTKB|F1S150 - symbol:LARP7 "Uncharacterized protein"... 149 2.4e-07 1
UNIPROTKB|E1BQG3 - symbol:LARP7 "Uncharacterized protein"... 148 3.2e-07 1
ZFIN|ZDB-GENE-030131-223 - symbol:ssb "Sjogren syndrome a... 145 3.5e-07 1
UNIPROTKB|F1S1V1 - symbol:SSB "Uncharacterized protein" s... 145 3.5e-07 1
UNIPROTKB|E9PFH8 - symbol:SSB "Lupus La protein" species:... 144 3.6e-07 1
UNIPROTKB|P10881 - symbol:SSB "Lupus La protein homolog" ... 144 4.6e-07 1
UNIPROTKB|E2RH09 - symbol:SSB "Uncharacterized protein" s... 144 4.6e-07 1
UNIPROTKB|P05455 - symbol:SSB "Lupus La protein" species:... 144 4.7e-07 1
UNIPROTKB|F1MAB1 - symbol:Ssb "Lupus La protein homolog" ... 143 5.3e-07 1
RGD|620804 - symbol:Ssb "Sjogren syndrome antigen B" spec... 143 6.3e-07 1
UNIPROTKB|Q66HM7 - symbol:Ssb "Sjogren syndrome antigen B... 143 6.3e-07 1
SGD|S000002209 - symbol:LHP1 "RNA binding protein require... 139 6.7e-07 1
MGI|MGI:98423 - symbol:Ssb "Sjogren syndrome antigen B" s... 142 8.1e-07 1
UNIPROTKB|Q9BRS8 - symbol:LARP6 "La-related protein 6" sp... 141 1.4e-06 1
UNIPROTKB|F1NWE6 - symbol:LARP6 "Uncharacterized protein"... 139 2.0e-06 1
UNIPROTKB|F1PKV9 - symbol:LARP6 "Uncharacterized protein"... 136 2.3e-06 2
WB|WBGene00016653 - symbol:C44E4.4 species:6239 "Caenorha... 137 2.7e-06 1
UNIPROTKB|F1MBD0 - symbol:LARP6 "Uncharacterized protein"... 137 3.1e-06 1
UNIPROTKB|F1SIT3 - symbol:LARP6 "Uncharacterized protein"... 137 3.9e-06 1
MGI|MGI:2443114 - symbol:Larp4 "La ribonucleoprotein doma... 139 4.1e-06 1
UNIPROTKB|H9KZD5 - symbol:LARP4 "Uncharacterized protein"... 139 4.3e-06 1
ZFIN|ZDB-GENE-030131-6896 - symbol:larp7 "La ribonucleopr... 137 4.7e-06 1
MGI|MGI:1914807 - symbol:Larp6 "La ribonucleoprotein doma... 136 5.1e-06 1
RGD|1308414 - symbol:Larp6 "La ribonucleoprotein domain f... 136 5.1e-06 1
RGD|1592944 - symbol:LOC680385 "similar to Sjogren syndro... 133 7.7e-06 1
DICTYBASE|DDB_G0281763 - symbol:DDB_G0281763 "Lupus La pr... 132 7.9e-06 1
CGD|CAL0005700 - symbol:SLF1 species:5476 "Candida albica... 132 9.8e-06 1
UNIPROTKB|Q5ADL6 - symbol:SLF1 "Potential polysome-associ... 132 9.8e-06 1
UNIPROTKB|Q96J85 - symbol:LARP4 "La-related protein 4" sp... 131 1.1e-05 1
UNIPROTKB|F1MHD9 - symbol:LARP4 "Uncharacterized protein"... 133 1.5e-05 1
UNIPROTKB|E9PDG5 - symbol:LARP4 "La-related protein 4" sp... 131 1.5e-05 1
UNIPROTKB|F1M4K9 - symbol:LOC683071 "Protein LOC683071" s... 131 2.3e-05 1
FB|FBgn0260771 - symbol:Larp7 "La related protein 7" spec... 131 2.4e-05 1
RGD|1306654 - symbol:Bub3 "budding uninhibited by benzimi... 131 2.6e-05 1
FB|FBgn0011638 - symbol:La "La autoantigen-like" species:... 128 2.6e-05 1
UNIPROTKB|G3XAA8 - symbol:LARP4 "La-related protein 4" sp... 131 2.7e-05 1
UNIPROTKB|F1SH87 - symbol:LARP4 "Uncharacterized protein"... 131 3.0e-05 1
UNIPROTKB|E2R028 - symbol:LARP4 "Uncharacterized protein"... 131 3.1e-05 1
UNIPROTKB|F1PIU8 - symbol:LARP4 "Uncharacterized protein"... 131 3.2e-05 1
UNIPROTKB|Q71RC2 - symbol:LARP4 "La-related protein 4" sp... 131 3.2e-05 1
ZFIN|ZDB-GENE-041008-244 - symbol:zgc:162969 "zgc:162969"... 128 3.6e-05 1
DICTYBASE|DDB_G0282811 - symbol:gtaK "GATA zinc finger do... 129 4.5e-05 1
DICTYBASE|DDB_G0291342 - symbol:tacA "transcription facto... 129 6.1e-05 1
TAIR|locus:2051734 - symbol:LARP6b "AT2G43970" species:37... 109 0.00018 2
DICTYBASE|DDB_G0292472 - symbol:DDB_G0292472 species:4468... 122 0.00021 1
DICTYBASE|DDB_G0280599 - symbol:fhkB "forkhead-associated... 125 0.00025 1
POMBASE|SPAC57A10.10c - symbol:sla1 "La protein homolog" ... 117 0.00027 1
FB|FBgn0033936 - symbol:CG17386 species:7227 "Drosophila ... 125 0.00027 2
UNIPROTKB|Q81YQ6 - symbol:BA_3482 "Uncharacterized protei... 119 0.00032 1
TIGR_CMR|BA_3482 - symbol:BA_3482 "conserved hypothetical... 119 0.00032 1
DICTYBASE|DDB_G0287057 - symbol:gtaN "GATA zinc finger do... 122 0.00043 1
UNIPROTKB|Q86YZ3 - symbol:HRNR "Hornerin" species:9606 "H... 125 0.00070 1
DICTYBASE|DDB_G0283357 - symbol:DDB_G0283357 "unknown" sp... 121 0.00076 1
DICTYBASE|DDB_G0281179 - symbol:clkA "protein kinase, CMG... 119 0.00090 1
>TAIR|locus:2125334 [details] [associations]
symbol:LARP1c "La related protein 1c" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM]
[GO:0048523 "negative regulation of cellular process" evidence=RCA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010150 "leaf senescence"
evidence=IMP] GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AF370207 EMBL:AY133869 IPI:IPI00542126 RefSeq:NP_567991.1
UniGene:At.23352 UniGene:At.70045 ProteinModelPortal:Q94K80
SMR:Q94K80 PRIDE:Q94K80 EnsemblPlants:AT4G35890.1 GeneID:829743
KEGG:ath:AT4G35890 TAIR:At4g35890 HOGENOM:HOG000151189
InParanoid:Q94K80 OMA:MSPRRIS PhylomeDB:Q94K80
ProtClustDB:CLSN2917672 Genevestigator:Q94K80 Uniprot:Q94K80
Length = 523
Score = 449 (163.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 106/257 (41%), Positives = 137/257 (53%)
Query: 4 EPIALVXXXXXXXXXVIELXXXXXXXXDEDNGAECGNGNAGSKRPPWNRQPSNGAAEMEP 63
EPIA V + DE + A G NAG K+P W R PSNGA+E+ P
Sbjct: 75 EPIASVSVAAPTAAVL----TVEAAAGDEKSEASGGQDNAG-KKPVWKR-PSNGASEVGP 128
Query: 64 VMGAHSWPALSETTRGXXXXXXXXXXXXX----XXXXXXXXXXXXQGTAATNSSSHKQVS 119
VMGA SWPALSETT+ QG A + + KQ +
Sbjct: 129 VMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIANASVPAPKQ-A 187
Query: 120 NNANPNSTTNHAASNRQRSMK-RNNSHSSSNGGLPQPPASQGSVVEGRSNNPSPRDHTQK 178
ANPN T NH+ RQRS K RN + S+NG + QP A QGS E S+NPSPR QK
Sbjct: 188 GRANPNPTPNHS---RQRSFKQRNGASGSANGTVSQPSA-QGSFTELPSHNPSPRGQNQK 243
Query: 179 SGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGNQDWNSHRNYSG 238
+GF SQ HGG ++P R S++++NGN HH ++GGRR+Q+ GNQ+W R+++G
Sbjct: 244 NGFASQNHGGTENPSQRDSYRNQNGN--------HHQSHGGRRNQEHGNQNWTFQRSFNG 295
Query: 239 RDAHMQPQRVVQRFTRH 255
R+ + Q QR F RH
Sbjct: 296 REGNAQSQRGTPAFVRH 312
Score = 305 (112.4 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 62/139 (44%), Positives = 96/139 (69%)
Query: 306 VPFVAPIPPHAVFF-PAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLI 364
+P++ PIP FF DP LH ++ QI YYFS+ENL+ D +LR M+++G+VP+R++
Sbjct: 348 MPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVV 407
Query: 365 AGFNKVSLLTDNIQLILDALRSSTVVEVQGDRIRKRNDWMRWIMPPGKFSSLPSPQSQGK 424
AGF KV+ LTDNIQ I++AL++S VEVQGD IRKR++W W++ S PQS +
Sbjct: 408 AGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWVLRRNPTGS--GPQSVDR 465
Query: 425 SGIDMLSAQVQSISLDQKT 443
+ D ++ ++ ++S+DQ +
Sbjct: 466 A--DAVAKRLGNLSVDQSS 482
Score = 45 (20.9 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 34 NGAECGNGNAGSKR--PPWNRQPSNGAAEMEPVMGAHSWPA 72
NG E GNA S+R P + R PS + M A +P+
Sbjct: 294 NGRE---GNAQSQRGTPAFVRHPSPTVQPIPQFMAAQPFPS 331
Score = 42 (19.8 bits), Expect = 5.5e-29, Sum P(2) = 5.5e-29
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 125 NSTTNHAASNRQRSMKRNNSHSSSNGGLPQPP 156
++T+N+ AS+ + + +H S + Q P
Sbjct: 3 SATSNNPASSSMSPRRISGNHGSPTASVAQSP 34
>TAIR|locus:2156912 [details] [associations]
symbol:LARP1b "AT5G66100" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0010150 "leaf senescence"
evidence=IMP] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AY091765 EMBL:AY149955 IPI:IPI00523817
RefSeq:NP_201411.2 UniGene:At.9216 ProteinModelPortal:Q8RWR2
SMR:Q8RWR2 PaxDb:Q8RWR2 PRIDE:Q8RWR2 EnsemblPlants:AT5G66100.1
GeneID:836742 KEGG:ath:AT5G66100 TAIR:At5g66100
HOGENOM:HOG000149120 InParanoid:Q8RWR2 OMA:DQMNDEG PhylomeDB:Q8RWR2
ProtClustDB:CLSN2915016 Genevestigator:Q8RWR2 Uniprot:Q8RWR2
Length = 453
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 116/336 (34%), Positives = 184/336 (54%)
Query: 108 AATNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRS 167
A +N+S++ ++ + S+ N A +N QR R N+++SS+ ++ +V
Sbjct: 137 ATSNTSTNANAGSSVSATSSENSAVNNSQRKPFRRNNNTSSS-------STSSNVSNAAP 189
Query: 168 NNPSPRDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGN 227
N ++H+Q+ G GS F GN R S ++RN + +PRG+G HH G RR+ + GN
Sbjct: 190 LNTRDQNHSQRGG-GS-FGSGNF----RNSQRNRNSSSYPRGEGLHH---GNRRNYEHGN 240
Query: 228 QDWNSHRNYSGRDAHMQPQRVVQRFTRHXXXXXXXXXXXXXXXXXXXXXXXXXXXIGFPE 287
Q SHRNYSGRD H+QPQR V I +P+
Sbjct: 241 QSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPPSFPASSAQYMAAPQLGSYGGPIIYPD 300
Query: 288 FASXXXXXXXXXXEALRGVPFVAPIPPHAVFFPAPDPQLHSRIVTQIDYYFSNENLVKDT 347
+A G+ V P P ++F D L+++I+TQ++YYFS +NL +D
Sbjct: 301 YAQHVFMPHPSPDPM--GL--VGPFPLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDE 356
Query: 348 FLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEVQGDRIRKRNDWMRWI 407
LR M+D+GWVP+R+IA F +++ LT+NIQ IL+ALRSS VVE+QG+ +R+R DW +++
Sbjct: 357 HLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVEIQGETLRRRGDWDKYL 416
Query: 408 MPPGKFSSLPSPQSQGKSGIDMLSAQVQSISLDQKT 443
+P S P+ G S L +Q++S++L +++
Sbjct: 417 LPREPSRSGPAA---GASNNASLVSQIESMTLSERS 449
Score = 202 (76.2 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 58/178 (32%), Positives = 86/178 (48%)
Query: 42 NAGSKRPP-WNRQPSNGAAEMEPVMGA-HSWPALSETTRGXXXXXXXXXXXXXXXXXXXX 99
NA K PP WN SN ++++ PVMGA SWPALS + R
Sbjct: 71 NADKKPPPVWNMPSSNSSSDVGPVMGAAESWPALSLSARSSSIKSPSLDASKPFPDGSSS 130
Query: 100 XXXXXQGTAATNSSSHKQVSNNANPNSTTNHAASNRQRS-MKRNNSHSSSNGGLPQPPAS 158
Q T+ N+S++ ++ + S+ N A +N QR +RNN+ SSS+ +
Sbjct: 131 SIPPPQATS--NTSTNANAGSSVSATSSENSAVNNSQRKPFRRNNNTSSSS--------T 180
Query: 159 QGSVVEGRSNNPSPRDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHN 216
+V N ++H+Q+ G GS F GN R S ++RN + +PRG+G HH N
Sbjct: 181 SSNVSNAAPLNTRDQNHSQRGG-GS-FGSGNF----RNSQRNRNSSSYPRGEGLHHGN 232
>UNIPROTKB|G3V0E9 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_115615.2 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3V0E9 SMR:G3V0E9 PRIDE:G3V0E9
Ensembl:ENST00000432347 ArrayExpress:G3V0E9 Bgee:G3V0E9
Uniprot:G3V0E9
Length = 358
Score = 227 (85.0 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 319 FPAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQ 378
+P + L I QI+YYFS ENL +D FLR MD+QG++PI LIAGF +V LT N+
Sbjct: 208 YPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLN 267
Query: 379 LILDALRSSTVVEVQGDRIRKRNDWMRWIMP-PGKFSSLPSPQSQ 422
LIL+AL+ ST VE+ +++RK+ + +W +P P S P+ SQ
Sbjct: 268 LILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQ 312
>WB|WBGene00020097 [details] [associations]
symbol:larp-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0034046 "poly(G) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0040010 GO:GO:0008266
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0040035 GO:GO:0000932 GO:GO:0034046
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 GeneTree:ENSGT00390000000523
EMBL:FO080694 ProteinModelPortal:D5MCN2 SMR:D5MCN2 PRIDE:D5MCN2
EnsemblMetazoa:R144.7b KEGG:cel:CELE_R144.7 CTD:175680
WormBase:R144.7b OMA:CAEMNTL ArrayExpress:D5MCN2 Uniprot:D5MCN2
Length = 1150
Score = 210 (79.0 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 55/123 (44%), Positives = 73/123 (59%)
Query: 306 VPFVAPI--PPHAVFFPAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRL 363
+PF API PP A P D L + QI+YYFS ENL KD FLR+ M +G++P+ L
Sbjct: 559 IPF-APIYNPPTAPR-PVTDDTLKEYVRKQIEYYFSEENLQKDFFLRRKMGPEGYLPVAL 616
Query: 364 IAGFNKVSLLTDNIQLILDALRSSTVVEVQGD--RIRKRNDWMRW-IMPP-GKFSSLPSP 419
IA F +V LT++ LIL+AL+ ST V++ D +IR + W +MP SLP P
Sbjct: 617 IASFPRVRSLTEDYSLILEALKDSTKVDMSPDGLQIRAPVNPTIWPLMPTVSGADSLPGP 676
Query: 420 QSQ 422
SQ
Sbjct: 677 SSQ 679
Score = 74 (31.1 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 140 KRNNSHSSSNGGLPQPPASQGSVVEGRSNNPSPRDHTQKSGFGSQFHGGNDHPHPRGSFK 199
K+ N+ + S+ +P PP S S + SN+P +H K + GN P +
Sbjct: 353 KKVNNKAGSD--MPTPPNST-SPHQSESNSP---EHLPKDK--APIMNGNAKNAPAAN-- 402
Query: 200 HRNGNQHPRGD-GSHHHNYGGRRDQDRGNQDWNSHRN--YSGR-DAHMQPQ-RVVQRFTR 254
RNGN G + H GG R +D+ RN + R + H P+ QR R
Sbjct: 403 -RNGNNTSTAKTGDYWHKNGGERKEDKSQPKAYYQRNDRFQARANPHAPPKLTAAQRKER 461
Score = 63 (27.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 25/89 (28%), Positives = 34/89 (38%)
Query: 154 QPPASQGSVVEGRS---NNPSPR-DHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRG 209
QP S VV G++ ++PS + HTQ S S N P + HP
Sbjct: 5 QPMLSFAKVVSGQAEDASSPSQQVQHTQDSSHSST-QNENSQPEKQA---------HPPH 54
Query: 210 DGSHHHNYGGRRDQDRGNQDWNSHRNYSG 238
+ N GGR ++ RG N G
Sbjct: 55 NRREKENVGGRSERPRGEGKGKRRNNRKG 83
Score = 59 (25.8 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 25/122 (20%), Positives = 44/122 (36%)
Query: 108 AATNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRS 167
+ +N ++Q + N A S+ + H S + P + ++ G +
Sbjct: 336 SGSNGIYYQQGGTHGWKKKVNNKAGSDMPTPPNSTSPHQSESNSPEHLPKDKAPIMNGNA 395
Query: 168 NNPSPRDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRD--QDR 225
N +P + +G N G + H+NG + + D S Y R D Q R
Sbjct: 396 KN-AP---------AANRNGNNTSTAKTGDYWHKNGGER-KEDKSQPKAYYQRNDRFQAR 444
Query: 226 GN 227
N
Sbjct: 445 AN 446
Score = 54 (24.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 105 QGTAATNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSN-GGLPQPPASQGSVV 163
Q A++ S Q + +++ +ST N + +++ +N N GG + P +G
Sbjct: 17 QAEDASSPSQQVQHTQDSSHSSTQNENSQPEKQAHPPHNRREKENVGGRSERPRGEGKGK 76
Query: 164 E--GRSNNPSPRDHTQ 177
R + PR T+
Sbjct: 77 RRNNRKGDRKPRGETK 92
Score = 54 (24.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 131 AASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNNPSPRDHTQKSGFGSQFHGGND 190
++ ++Q +++SHSS+ QP + +P P + +K G G ++
Sbjct: 22 SSPSQQVQHTQDSSHSSTQNENSQPE---------KQAHP-PHNRREKENVG----GRSE 67
Query: 191 HPHPRGSFKHRN---GNQHPRGD 210
P G K RN G++ PRG+
Sbjct: 68 RPRGEGKGKRRNNRKGDRKPRGE 90
>POMBASE|SPAC1527.03 [details] [associations]
symbol:SPAC1527.03 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005844 "polysome" evidence=ISO] [GO:0006412
"translation" evidence=ISO] PomBase:SPAC1527.03 GO:GO:0005829
EMBL:CU329670 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0002181 GO:GO:0005844 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 HSSP:P05455
OrthoDB:EOG46MFST RefSeq:NP_594554.1 ProteinModelPortal:Q9P6K0
EnsemblFungi:SPAC1527.03.1 GeneID:2541645 KEGG:spo:SPAC1527.03
NextBio:20802738 Uniprot:Q9P6K0
Length = 475
Score = 202 (76.2 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 38/120 (31%), Positives = 72/120 (60%)
Query: 330 IVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTV 389
+ +Q++YYFS ENL KD FLR++MDD+G+VP+ +A FN++ + ++ L+ A ++S +
Sbjct: 329 LTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAACKASDI 388
Query: 390 VEVQGD-------RIRKRNDWMRWIMPPG---KFSSLPSPQSQGKSGIDMLSAQVQSISL 439
++V D ++R++ W WI+P KF PQ S + L++ + ++++
Sbjct: 389 IDVAIDLQSPMSIKVRRKETWSPWILPSESRLKFEMAKYPQINSSSSMSPLASSISNLTI 448
Score = 67 (28.6 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 30/112 (26%), Positives = 45/112 (40%)
Query: 110 TNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHS-SSNGGLPQPPASQGSVVEGRSN 168
TN S K S + + ++N +A R S + SS G P S+ S +
Sbjct: 194 TNYSREKDASRSID---SSNPSAEYRDDINNTFGSQTVSSANGKEVPQTSEDS------S 244
Query: 169 NPSPRDHTQKSGFGSQFHGGNDHPHPRG----SFKHRNGNQHPRGDGSHHHN 216
+ +P H+ SG GGN H + + SF H+ N G H+N
Sbjct: 245 SQAPH-HSSSSGHAPSQQGGNKHSYKKSDSQQSFHHKGRNTRK---GQRHNN 292
Score = 50 (22.7 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 17/62 (27%), Positives = 20/62 (32%)
Query: 175 HTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGNQDWNSHR 234
HT S S ND G+ + R GN G NY +D R N
Sbjct: 156 HTPISNRKSS-RSRNDGSRRNGNGRRR-GNYSSHGSNKRQTNYSREKDASRSIDSSNPSA 213
Query: 235 NY 236
Y
Sbjct: 214 EY 215
Score = 50 (22.7 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 33/145 (22%), Positives = 54/145 (37%)
Query: 109 ATNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHS------SSNGGLPQPPA-SQGS 161
A ++SS K S + P S N A +++ + + +SH S + L P
Sbjct: 60 ANHTSSDKSKSEDYQP-SNVNVWALRKEKMIPKKHSHVKQEKRFSKSLQLQDPNVWPSPE 118
Query: 162 VVEGRSNNPSPRDHTQKSGFGSQFHGGNDHPHPRGSFKH----RNGNQHPRGDGSHHHNY 217
+ E + + D +QK + +G +F H + R DGS +
Sbjct: 119 IAEKQVEDRKLSDDSQKP-LAPKANGKEKWVTITPNFTHTPISNRKSSRSRNDGSRRNGN 177
Query: 218 GGRRDQDRGNQDWNSHRNYSG-RDA 241
G RR + NYS +DA
Sbjct: 178 GRRRGNYSSHGSNKRQTNYSREKDA 202
Score = 49 (22.3 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 13/66 (19%), Positives = 26/66 (39%)
Query: 106 GTAATNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNS-HSSSNGGLPQPPASQGSVVE 164
G A + +K ++ + +H N ++ + NN + + + P + VV
Sbjct: 255 GHAPSQQGGNKHSYKKSDSQQSFHHKGRNTRKGQRHNNGFYRNIANNIQGPFPNYPVVVN 314
Query: 165 GRSNNP 170
G NP
Sbjct: 315 GNGVNP 320
Score = 41 (19.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 106 GTAATNSSSHKQVSNNANPNSTT--NHAASNRQR-SMKRNNSHSSSNGGLPQPPASQG-S 161
G+ +S++ K+V + +S+ +H++S+ S + N HS Q +G +
Sbjct: 224 GSQTVSSANGKEVPQTSEDSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQSFHHKGRN 283
Query: 162 VVEGRSNN 169
+G+ +N
Sbjct: 284 TRKGQRHN 291
Score = 39 (18.8 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 111 NSSSHKQVSNNANPNSTTNHAASNRQRS 138
NS + K N N + NH +S++ +S
Sbjct: 45 NSLTGKTAEENLNDEA--NHTSSDKSKS 70
>UNIPROTKB|G3XAJ5 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_835144.1 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3XAJ5 SMR:G3XAJ5 PRIDE:G3XAJ5
Ensembl:ENST00000427266 ArrayExpress:G3XAJ5 Bgee:G3XAJ5
Uniprot:G3XAJ5
Length = 522
Score = 227 (85.0 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 319 FPAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQ 378
+P + L I QI+YYFS ENL +D FLR MD+QG++PI LIAGF +V LT N+
Sbjct: 208 YPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLN 267
Query: 379 LILDALRSSTVVEVQGDRIRKRNDWMRWIMP-PGKFSSLPSPQSQ 422
LIL+AL+ ST VE+ +++RK+ + +W +P P S P+ SQ
Sbjct: 268 LILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQ 312
>UNIPROTKB|Q659C4 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 EMBL:AK001240
EMBL:AK027164 EMBL:AK092764 EMBL:AK098437 EMBL:AL137759
EMBL:AL832170 EMBL:BX537937 EMBL:AC096898 EMBL:AC099340
EMBL:AC108045 EMBL:AC114735 EMBL:AC124030 EMBL:BC030516
EMBL:BC050654 EMBL:BC062606 EMBL:BC110300 IPI:IPI00383949
IPI:IPI00855721 IPI:IPI00855786 IPI:IPI00855812 IPI:IPI00855930
IPI:IPI00855953 IPI:IPI00856120 IPI:IPI00940348 IPI:IPI00943149
RefSeq:NP_060548.2 RefSeq:NP_115615.2 RefSeq:NP_835144.1
UniGene:Hs.657067 HSSP:Q71RC2 ProteinModelPortal:Q659C4 SMR:Q659C4
DIP:DIP-47319N IntAct:Q659C4 PhosphoSite:Q659C4 DMDM:158564329
PaxDb:Q659C4 PRIDE:Q659C4 DNASU:55132 Ensembl:ENST00000264584
Ensembl:ENST00000326639 Ensembl:ENST00000354456
Ensembl:ENST00000394288 Ensembl:ENST00000441387 GeneID:55132
KEGG:hsa:55132 UCSC:uc003ifw.1 UCSC:uc003iga.3 UCSC:uc003igc.3
UCSC:uc003igf.3 CTD:55132 GeneCards:GC04P128983 HGNC:HGNC:24704
HPA:HPA036280 neXtProt:NX_Q659C4 PharmGKB:PA165664174
InParanoid:Q659C4 OMA:PPYVKKH OrthoDB:EOG4PZJ64 PhylomeDB:Q659C4
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806 ArrayExpress:Q659C4
Bgee:Q659C4 CleanEx:HS_LARP2 Genevestigator:Q659C4
InterPro:IPR006607 SMART:SM00684 Uniprot:Q659C4
Length = 914
Score = 227 (85.0 bits), Expect = 8.2e-16, P = 8.2e-16
Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 319 FPAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQ 378
+P + L I QI+YYFS ENL +D FLR MD+QG++PI LIAGF +V LT N+
Sbjct: 208 YPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLN 267
Query: 379 LILDALRSSTVVEVQGDRIRKRNDWMRWIMP-PGKFSSLPSPQSQ 422
LIL+AL+ ST VE+ +++RK+ + +W +P P S P+ SQ
Sbjct: 268 LILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQ 312
>UNIPROTKB|E1BVY8 [details] [associations]
symbol:LOC420093 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00510000048191 EMBL:AADN02072211 IPI:IPI00821190
Ensembl:ENSGALT00000041247 Uniprot:E1BVY8
Length = 173
Score = 174 (66.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 38/86 (44%), Positives = 58/86 (67%)
Query: 319 FPAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDN 376
+ PDPQL RIV+Q+++Y S+ENL KD FL +++ G+V I+L+ F KV LT +
Sbjct: 70 YSIPDPQLIRRIVSQVEFYLSDENLAKDAFLLKHVQKNKLGFVSIKLLTSFKKVKYLTRD 129
Query: 377 IQLILDALRSSTVVEV--QGDRIRKR 400
+L L ALR S ++EV +G ++R+R
Sbjct: 130 WRLTLYALRFSKLLEVNQEGTKVRRR 155
>ASPGD|ASPL0000062948 [details] [associations]
symbol:AN1288 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:BN001308 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AACD01000017 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 OrthoDB:EOG46MFST RefSeq:XP_658892.1
EnsemblFungi:CADANIAT00001332 GeneID:2877068 KEGG:ani:AN1288.2
HOGENOM:HOG000208218 OMA:TFSYAQA Uniprot:Q5BDU2
Length = 734
Score = 181 (68.8 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 45/129 (34%), Positives = 70/129 (54%)
Query: 302 ALRGVPFVAPIPPHAV-FFPAPDP-QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWV 359
++ G V P P A+ F P + + I Q+DYYFS +NL KD +LR++MD QG+V
Sbjct: 546 SMYGYQPVQPGPMSAMPFQPYMESFSVIGMITLQLDYYFSVDNLCKDIYLRKHMDSQGFV 605
Query: 360 PIRLIAGFNKVSLLTDNIQLILDALRSSTVVEVQG-----DRIRKRNDWMRWIMPPGKFS 414
+ +IA F +V L+++ +L+ A R E DR+R R W +W++P +
Sbjct: 606 ALNVIANFKRVKQLSEDFELLRHASRQLKAAEYHAGEDGIDRLRPRERWEQWVLPIEQRD 665
Query: 415 SLPSPQSQG 423
PS Q+ G
Sbjct: 666 --PSAQNAG 672
Score = 62 (26.9 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 32/121 (26%), Positives = 50/121 (41%)
Query: 105 QGTAATNSSSH---KQVSNNANPNSTT-----NHAASNRQRSMKRNNSHSSSNGG--LPQ 154
QG+ A S+S + N+A NS +++A N +++ + GG L
Sbjct: 317 QGSTAKQSASGDRGRNEPNSARANSLPAPSRRSNSADNGNTDVRKTQMPDRTRGGKGLDN 376
Query: 155 PPASQGSVVEG----RSNNPSPRDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQH-PRG 209
A+ G V G R P P++H GF GG+ +P S NG + P G
Sbjct: 377 ANAASGKQVNGEPFSRHAKPFPKNH---EGFQK---GGDYTKNPNLSVDTHNGPRSGPNG 430
Query: 210 D 210
+
Sbjct: 431 E 431
Score = 53 (23.7 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 27/128 (21%), Positives = 42/128 (32%)
Query: 119 SNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNNPSPRDHTQK 178
+N A+ S + +N+ G + P G + P+ +
Sbjct: 377 ANAASGKQVNGEPFSRHAKPFPKNHEGFQKGGDYTKNPNLSVDTHNGPRSGPNGERRFEN 436
Query: 179 SGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGNQDWNSHRNYSG 238
+ F N H R F R RG GSH GG + G Q + N+ G
Sbjct: 437 GPKSADF--SNLHSD-RKEFTPRA----ERGRGSHRGRGGGHAGYN-GAQASHFPNNHMG 488
Query: 239 RDAHMQPQ 246
+M P+
Sbjct: 489 PQGYMHPK 496
Score = 48 (22.0 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 27/153 (17%), Positives = 57/153 (37%)
Query: 106 GTAATNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQ---PPASQGSV 162
G +A S++ + S + N + A++ +R+NS + N + + P ++G
Sbjct: 313 GQSAQGSTAKQSASGDRGRNEPNSARANSLPAPSRRSNSADNGNTDVRKTQMPDRTRGG- 371
Query: 163 VEGRSNNPSPRDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRD 222
+G +N + Q +G H P P+ + G + + + G R
Sbjct: 372 -KGL-DNANAASGKQVNGEPFSRHA---KPFPKNHEGFQKGGDYTKNPNLSVDTHNGPRS 426
Query: 223 QDRGNQDW-NSHRNYSGRDAHMQPQRVVQRFTR 254
G + + N ++ + H + R R
Sbjct: 427 GPNGERRFENGPKSADFSNLHSDRKEFTPRAER 459
Score = 44 (20.5 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 23/114 (20%), Positives = 41/114 (35%)
Query: 106 GTAATNSSSHKQVSNNANPNSTTNHAAS-NRQRSMKRNNSHSSSNGGLPQPPAS----QG 160
GT+ T Q S + NS + + ++ K + P P + +
Sbjct: 98 GTSETTWDKQSQTSGSDKENSAAKGTETKSSEKKKKEKPAPPKELKAAPLPAVNVWQQRK 157
Query: 161 SVVEGRSN-NPSPRDHTQKSGFGSQFHGGND--HPHPRGSFKHRNGNQHPRGDG 211
E + NP+ + S S+ ++ P+ S K + G+ RGDG
Sbjct: 158 EAQEAKVKANPAANVVAKASKSTSETSSVSEDTQDQPKTSSKKKGGDLSKRGDG 211
Score = 37 (18.1 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 58 AAEMEPVMGAHSWP 71
+A + PV A SWP
Sbjct: 217 SAPVPPVADAASWP 230
>UNIPROTKB|F1P339 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:AADN02028672 IPI:IPI00590067
Ensembl:ENSGALT00000006374 Uniprot:F1P339
Length = 927
Score = 197 (74.4 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 39/84 (46%), Positives = 56/84 (66%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALR 385
L I QI+YYFS +NL +D FLR+ MD G++PI LIA F++V LT +I LI+ AL+
Sbjct: 242 LKDYIKRQIEYYFSVDNLERDFFLRRKMDSDGFLPITLIASFHRVQALTTDISLIIKALK 301
Query: 386 SSTVVEVQGDRIRKRNDWMRWIMP 409
S VVE+ +IR++ +W +P
Sbjct: 302 DSKVVEIVDQKIRRKEQPEKWALP 325
>UNIPROTKB|Q6PKG0 [details] [associations]
symbol:LARP1 "La-related protein 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0016239
"positive regulation of macroautophagy" evidence=IMP]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684 EMBL:BC001460
EMBL:BC033856 EMBL:AK091465 EMBL:AB018274 EMBL:AL133034
IPI:IPI00185919 IPI:IPI00411690 PIR:T42646 RefSeq:NP_056130.2
UniGene:Hs.292078 ProteinModelPortal:Q6PKG0 SMR:Q6PKG0
IntAct:Q6PKG0 MINT:MINT-1631511 STRING:Q6PKG0 PhosphoSite:Q6PKG0
DMDM:73621135 PaxDb:Q6PKG0 PRIDE:Q6PKG0 DNASU:23367
Ensembl:ENST00000336314 Ensembl:ENST00000518297 GeneID:23367
KEGG:hsa:23367 UCSC:uc003lvo.3 UCSC:uc010jie.1 CTD:23367
GeneCards:GC05P154092 HGNC:HGNC:29531 HPA:CAB015222 MIM:612059
neXtProt:NX_Q6PKG0 PharmGKB:PA142671564 HOGENOM:HOG000113283
HOVERGEN:HBG054322 InParanoid:Q6PKG0 OMA:GSEPATY ChiTaRS:LARP1
GenomeRNAi:23367 NextBio:45430 PMAP-CutDB:Q6PKG0 Bgee:Q6PKG0
CleanEx:HS_LARP1 Genevestigator:Q6PKG0 GermOnline:ENSG00000155506
Uniprot:Q6PKG0
Length = 1096
Score = 203 (76.5 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALR 385
L I QI+YYFS +NL +D FLR+ MD G++PI LIA F++V LT +I LI AL+
Sbjct: 403 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 462
Query: 386 SSTVVEVQGDRIRKRNDWMRWIMPP 410
S VVE+ +++R+R + +W +PP
Sbjct: 463 DSKVVEIVDEKVRRREEPEKWPLPP 487
Score = 39 (18.8 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 14/62 (22%), Positives = 21/62 (33%)
Query: 124 PNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNNPSPR-DHTQKSGFG 182
P T A +++ + G P P +G +G + P P K G G
Sbjct: 10 PGGATLLQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTG 69
Query: 183 SQ 184
Q
Sbjct: 70 QQ 71
Score = 38 (18.4 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 40 NGNAGSKRPPWNRQPSNGAAEME-----PVM--GAHSWPALSETTRG 79
+G+A RPP + G + E P+ GA PA+S+ G
Sbjct: 50 DGSARRPRPPCAKPHKEGTGQQERESPRPLQLPGAEG-PAISDGEEG 95
>UNIPROTKB|F1P301 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02020271 IPI:IPI01017187
Ensembl:ENSGALT00000038515 ArrayExpress:F1P301 Uniprot:F1P301
Length = 205
Score = 167 (63.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 42/118 (35%), Positives = 65/118 (55%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L S+I QI+YYF N NL +D FL++ + D GWVP+ ++ FN++S L+ + +I++AL
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSKDFGVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKRNDWMRWIMPPGKFSSLPSPQSQGKSGIDMLSAQVQSISLD 440
R S ++E+ D+ + R P K LP Q K+ I S V+ LD
Sbjct: 73 RKSKTGLMEINEDKTKIRRS-------PNK--PLPELNDQYKAAIKNRSVYVKGFPLD 121
>UNIPROTKB|Q5ZKS1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 GeneTree:ENSGT00530000063464 HOGENOM:HOG000006947
OrthoDB:EOG4C2HB3 EMBL:AADN02020271 EMBL:AJ720013 IPI:IPI00599030
UniGene:Gga.42753 UniGene:Gga.53297 SMR:Q5ZKS1 STRING:Q5ZKS1
Ensembl:ENSGALT00000015751 HOVERGEN:HBG059895 InParanoid:Q5ZKS1
Uniprot:Q5ZKS1
Length = 137
Score = 167 (63.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 42/118 (35%), Positives = 65/118 (55%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L S+I QI+YYF N NL +D FL++ + D GWVP+ ++ FN++S L+ + +I++AL
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSKDFGVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKRNDWMRWIMPPGKFSSLPSPQSQGKSGIDMLSAQVQSISLD 440
R S ++E+ D+ + R P K LP Q K+ I S V+ LD
Sbjct: 73 RKSKTGLMEINEDKTKIRRS-------PNK--PLPELNDQYKAAIKNRSVYVKGFPLD 121
>RGD|1306683 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10116 "Rattus norvegicus" [GO:0016239 "positive regulation
of macroautophagy" evidence=ISO] RGD:1306683 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684
GeneTree:ENSGT00390000000523 IPI:IPI00369227 PRIDE:F1M062
Ensembl:ENSRNOT00000036959 Uniprot:F1M062
Length = 1024
Score = 193 (73.0 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALR 385
L I QI+YYFS +NL +D FLR+ MD G++PI LIA F++V LT +I LI AL+
Sbjct: 330 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 389
Query: 386 SSTVVEVQGDRIRKRNDWMRWIMP 409
S VVE+ +++R+R + +W +P
Sbjct: 390 DSKVVEMVEEKVRRREEPEKWPLP 413
>MGI|MGI:1890165 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISA] [GO:0016239 "positive regulation of
macroautophagy" evidence=ISO] MGI:MGI:1890165 GO:GO:0005737
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
EMBL:AL672182 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 OrthoDB:EOG4PZJ64 InterPro:IPR006607
SMART:SM00684 HOGENOM:HOG000113283 HOVERGEN:HBG054322 OMA:GSEPATY
EMBL:BC053449 EMBL:AK129202 IPI:IPI00929761 IPI:IPI00929786
UniGene:Mm.248843 ProteinModelPortal:Q6ZQ58 SMR:Q6ZQ58
STRING:Q6ZQ58 PhosphoSite:Q6ZQ58 PaxDb:Q6ZQ58 PRIDE:Q6ZQ58
Ensembl:ENSMUST00000071487 UCSC:uc007jah.2
GeneTree:ENSGT00390000000523 InParanoid:Q6ZQ58 Bgee:Q6ZQ58
CleanEx:MM_LARP1 Genevestigator:Q6ZQ58
GermOnline:ENSMUSG00000037331 Uniprot:Q6ZQ58
Length = 1072
Score = 193 (73.0 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALR 385
L I QI+YYFS +NL +D FLR+ MD G++PI LIA F++V LT +I LI AL+
Sbjct: 378 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 437
Query: 386 SSTVVEVQGDRIRKRNDWMRWIMP 409
S VVE+ +++R+R + +W +P
Sbjct: 438 DSKVVEMVEEKVRRREEPEKWPLP 461
>UNIPROTKB|F1MZU1 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:DAAA02020719 IPI:IPI00714415
PRIDE:F1MZU1 Ensembl:ENSBTAT00000011109 Uniprot:F1MZU1
Length = 951
Score = 192 (72.6 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALR 385
L I QI+YYFS +NL +D FLR+ MD G++P+ LIA F++V LT +I LI AL+
Sbjct: 258 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPMTLIASFHRVQALTTDISLIFAALK 317
Query: 386 SSTVVEVQGDRIRKRNDWMRWIMP 409
S VVE+ +++R+R + +W +P
Sbjct: 318 DSKVVEIVEEKVRRREEPEKWPLP 341
>UNIPROTKB|D6RAF3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966387
ProteinModelPortal:D6RAF3 SMR:D6RAF3 Ensembl:ENST00000507443
HOGENOM:HOG000213946 ArrayExpress:D6RAF3 Bgee:D6RAF3 Uniprot:D6RAF3
Length = 129
Score = 151 (58.2 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 33 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 92
Query: 383 ALRSSTVVEV--QGDRIRKR 400
ALRSS VVE+ +G RIR++
Sbjct: 93 ALRSSAVVELDLEGTRIRRK 112
>UNIPROTKB|D6RF49 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00967495
ProteinModelPortal:D6RF49 SMR:D6RF49 Ensembl:ENST00000508577
ArrayExpress:D6RF49 Bgee:D6RF49 Uniprot:D6RF49
Length = 119
Score = 151 (58.2 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 33 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 92
Query: 383 ALRSSTVVEV--QGDRIRKR 400
ALRSS VVE+ +G RIR++
Sbjct: 93 ALRSSAVVELDLEGTRIRRK 112
>UNIPROTKB|F1NYE7 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS
EMBL:AADN02020271 IPI:IPI00680677 Ensembl:ENSGALT00000033213
ArrayExpress:F1NYE7 Uniprot:F1NYE7
Length = 404
Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 42/118 (35%), Positives = 65/118 (55%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L S+I QI+YYF N NL +D FL++ + D GWVP+ ++ FN++S L+ + +I++AL
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSKDFGVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKRNDWMRWIMPPGKFSSLPSPQSQGKSGIDMLSAQVQSISLD 440
R S ++E+ D+ + R P K LP Q K+ I S V+ LD
Sbjct: 73 RKSKTGLMEINEDKTKIRRS-------PNK--PLPELNDQYKAAIKNRSVYVKGFPLD 121
>UNIPROTKB|E7ERC4 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916922
ProteinModelPortal:E7ERC4 SMR:E7ERC4 PRIDE:E7ERC4
Ensembl:ENST00000422006 ArrayExpress:E7ERC4 Bgee:E7ERC4
Uniprot:E7ERC4
Length = 184
Score = 144 (55.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/78 (35%), Positives = 52/78 (66%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ ++ FN+++ LT + +I++AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++E+ D+ + R
Sbjct: 73 SKSKAELMEISEDKTKIR 90
>UNIPROTKB|E9PFL9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00917205
ProteinModelPortal:E9PFL9 SMR:E9PFL9 PRIDE:E9PFL9
Ensembl:ENST00000413002 ArrayExpress:E9PFL9 Bgee:E9PFL9
Uniprot:E9PFL9
Length = 134
Score = 144 (55.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/78 (35%), Positives = 52/78 (66%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ ++ FN+++ LT + +I++AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++E+ D+ + R
Sbjct: 73 SKSKAELMEISEDKTKIR 90
>FB|FBgn0261618 [details] [associations]
symbol:larp "La related protein" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0035071
"salivary gland cell autophagic cell death" evidence=IEP]
[GO:0048102 "autophagic cell death" evidence=IEP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0051225 "spindle assembly" evidence=IMP]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0051299 "centrosome separation" evidence=IMP] [GO:0007053
"spindle assembly involved in male meiosis" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0007140 "male
meiosis" evidence=IMP] [GO:0000001 "mitochondrion inheritance"
evidence=IMP] [GO:0035186 "syncytial blastoderm mitotic cell cycle"
evidence=IMP] EMBL:AE014297 GO:GO:0005829 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0000001 GO:GO:0035071
GO:GO:0035186 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 InterPro:IPR006607 SMART:SM00684
ChiTaRS:LARP1 GeneTree:ENSGT00390000000523 EMBL:AF221108
EMBL:AY113653 EMBL:AY118468 EMBL:BT100187 RefSeq:NP_001163757.1
RefSeq:NP_001247347.1 RefSeq:NP_001247348.1 RefSeq:NP_524998.1
RefSeq:NP_733244.5 RefSeq:NP_733245.1 IntAct:Q9VAW5 STRING:Q9VAW5
PaxDb:Q9VAW5 PRIDE:Q9VAW5 EnsemblMetazoa:FBtr0301180
EnsemblMetazoa:FBtr0306389 EnsemblMetazoa:FBtr0306390 GeneID:53567
KEGG:dme:Dmel_CG42551 CTD:53567 FlyBase:FBgn0261618
InParanoid:Q9VAW5 OMA:EPEINEM PhylomeDB:Q9VAW5 GenomeRNAi:53567
NextBio:841422 Bgee:Q9VAW5 GermOnline:CG14066 GO:GO:0007053
Uniprot:Q9VAW5
Length = 1673
Score = 167 (63.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 34/105 (32%), Positives = 61/105 (58%)
Query: 303 LRGVPFVAPIPPHAVFFPAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIR 362
L G + +P A + + I Q++YYFS +NL D FLR+ MD +G++P+
Sbjct: 708 LMGTHYFGNVP--AAYIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVT 765
Query: 363 LIAGFNKVSLLTDNIQLILDALRSSTVVEV-QGDRIRKRNDWMRW 406
LIA F++V LT ++ +I++A++ S +E+ +G ++R + W
Sbjct: 766 LIASFHRVLALTTDVAVIVNAIKESDKLELFEGYKVRTKTTPTTW 810
Score = 54 (24.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 40/185 (21%), Positives = 57/185 (30%)
Query: 35 GAECGNGNAGSKRPPWNRQPSNGAAEMEPVMGAHSWPALSE--TTRGXXXXXXXXXXXXX 92
G G+G A S P N +A+ + A S SE T
Sbjct: 418 GGTSGSGKATSNEPKRNPTKKQQSAKTAAAVAASSNTTSSEVATESNVAGTTSSSNSNPS 477
Query: 93 XXXXXXXXXXXXQGTAA-TNSSSHK-QVSNNANP--NS---TTNHAASNRQRSMKRNNSH 145
Q T A S+SH + +A P NS TT AA K+ H
Sbjct: 478 SSTTTTNTTTNSQATTAPVASTSHDAKAQRDAEPAANSAAGTTGTAAG--PALTKKIPKH 535
Query: 146 SSSNGGLPQPPASQGSVVEGRSNNPSPRDHTQKSGFGSQFHGGNDHPHPRG-SFKHRNGN 204
+ +S+ + GR N D + +H G +H +
Sbjct: 536 KWRPLPIDLAKSSRPKPIGGRPNRRFSDDIADQRRPPRVYHDRQPGAGGAGVESRHPHAG 595
Query: 205 QHPRG 209
+HP G
Sbjct: 596 RHPYG 600
Score = 43 (20.2 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 199 KHRNGNQHP---RGDGSHHHNYGGRR 221
K + +Q P RGDG GGRR
Sbjct: 136 KEKPRDQQPAGGRGDGQKPQQAGGRR 161
Score = 40 (19.1 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 39 GNGNAG--SKRPPWNRQPSNGAAEMEPVMGAHSWPALSETT 77
G G AG S+ P R P SW + S TT
Sbjct: 581 GAGGAGVESRHPHAGRHPYGSRPATATSERVDSWRSSSSTT 621
Score = 38 (18.4 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 107 TAATNSSSHKQVSNNANPNSTTNHAAS 133
TAAT S++ S A P +TT A +
Sbjct: 352 TAATTSAAAATSSAAAVPAATTETATT 378
>FB|FBgn0035424 [details] [associations]
symbol:CG11505 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
EMBL:AE014296 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 HSSP:Q71RC2
GeneTree:ENSGT00530000063417 EMBL:BT010118 RefSeq:NP_647793.1
RefSeq:NP_728843.1 RefSeq:NP_995985.2 ProteinModelPortal:Q9I7T7
SMR:Q9I7T7 IntAct:Q9I7T7 MINT:MINT-298656 STRING:Q9I7T7
PaxDb:Q9I7T7 EnsemblMetazoa:FBtr0073046 GeneID:38399
KEGG:dme:Dmel_CG11505 UCSC:CG11505-RB FlyBase:FBgn0035424
InParanoid:Q9VZS2 OMA:TPNINAS OrthoDB:EOG4V15H8 PhylomeDB:Q9I7T7
ChiTaRS:CG11505 GenomeRNAi:38399 NextBio:808431 Bgee:Q9I7T7
Uniprot:Q9I7T7
Length = 1531
Score = 167 (63.8 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 37/87 (42%), Positives = 51/87 (58%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLIL 381
P +L + TQ++YYFS ENL DT+L MD +VPI +A FN V LT++I LI
Sbjct: 264 PLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLIT 323
Query: 382 DALRSSTVVEVQGDRIRKRNDWMRWIM 408
+ LR S V+V +R R + R I+
Sbjct: 324 EVLRESPNVQVDDKGLRVRPNRKRCII 350
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 148 (57.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 35 QVLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 94
Query: 383 ALRSSTVVEV--QGDRIRKR 400
A++SS+VVE+ +G RIR+R
Sbjct: 95 AVKSSSVVELDLEGTRIRRR 114
>TAIR|locus:2170478 [details] [associations]
symbol:LARP6a "La related protein 6a" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0048193
"Golgi vesicle transport" evidence=RCA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 HSSP:P19339 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 KO:K15191 HOGENOM:HOG000244026
EMBL:AY050403 EMBL:BT000588 IPI:IPI00526923 RefSeq:NP_851141.1
UniGene:At.9180 ProteinModelPortal:Q94A38 SMR:Q94A38 IntAct:Q94A38
STRING:Q94A38 PRIDE:Q94A38 EnsemblPlants:AT5G46250.1 GeneID:834667
KEGG:ath:AT5G46250 TAIR:At5g46250 InParanoid:Q94A38 OMA:WRNGMRV
PhylomeDB:Q94A38 ProtClustDB:CLSN2680453 Genevestigator:Q94A38
Uniprot:Q94A38
Length = 422
Score = 150 (57.9 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 42/121 (34%), Positives = 65/121 (53%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
P +L+ +I+ Q++YYFS+ENL D FL M + +G+VPI IA F+K+ LT + L
Sbjct: 99 PIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHAL 158
Query: 380 ILDALRSSTVVEVQGDRIR-KRNDWMRWIMPPGKFSSLPS--PQSQGKSGIDMLSAQVQS 436
I+ AL+ S+ + V D + KR + I P F+ L P+ I + + S
Sbjct: 159 IVSALKESSFLVVSADEKKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGS 218
Query: 437 I 437
I
Sbjct: 219 I 219
Score = 46 (21.3 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 204 NQHPRGDG-SHHHNYGGRRDQDRG 226
N P D H N G RDQD G
Sbjct: 64 NLSPSDDDFDHERNSGEDRDQDHG 87
>UNIPROTKB|D6RFF0 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
Length = 299
Score = 151 (58.2 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 33 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 92
Query: 383 ALRSSTVVEV--QGDRIRKR 400
ALRSS VVE+ +G RIR++
Sbjct: 93 ALRSSAVVELDLEGTRIRRK 112
>SGD|S000000542 [details] [associations]
symbol:SRO9 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0002181 "cytoplasmic translation"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005844 "polysome"
evidence=IDA] SGD:S000000542 GO:GO:0005737 EMBL:X59720
EMBL:BK006937 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0002181 GO:GO:0005844 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000067375 OrthoDB:EOG46MFST PIR:S19365
RefSeq:NP_009893.2 ProteinModelPortal:P25567 SMR:P25567
DIP:DIP-6638N IntAct:P25567 MINT:MINT-633857 STRING:P25567
PaxDb:P25567 PeptideAtlas:P25567 EnsemblFungi:YCL037C GeneID:850320
KEGG:sce:YCL037C CYGD:YCL037c HOGENOM:HOG000057093 OMA:VSTISIE
NextBio:965730 Genevestigator:P25567 GermOnline:YCL037C
Uniprot:P25567
Length = 434
Score = 117 (46.2 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 33/94 (35%), Positives = 48/94 (51%)
Query: 318 FFPA-PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLT-- 374
F+P P + I QI+YYFS ENL D +LR + G+ P+ LI+ F +V ++
Sbjct: 252 FYPVQPVLMAINNIARQIEYYFSEENLTVDNYLRSKLSKDGFAPLSLISKFYRVVNMSFG 311
Query: 375 DNIQLILDALR------SSTVVEVQGDRIRKRND 402
+ LIL ALR ++TV +G K D
Sbjct: 312 GDTNLILAALREIVANEAATVNVAEGTLAAKEGD 345
Score = 81 (33.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 36/156 (23%), Positives = 67/156 (42%)
Query: 109 ATNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSN 168
A+N +S+K NN S+T+ + +NR+ K+++ H++ + + +V E S
Sbjct: 101 ASNGNSNKS-KNNKTAASSTSSSNANRK---KKHHQHNAKKQQQMKKDGFESAVGEEDSK 156
Query: 169 NPSPRDHTQKSGFGSQFHGGNDH-PH------P-RGSFKHRNGNQHPRGDG--SHHHNYG 218
+ + +++ Q + H N H H P R F + N P+ G Y
Sbjct: 157 DATSQENGQSTQQQQPPHHRNHHHSHHHNSNGPQRRKFHNSNNAGMPQNQGFPPQFKPYQ 216
Query: 219 GRRDQDRGNQDWNSHRNYSGRDAH-MQPQ-RVVQRF 252
GR ++ N H ++ H QP ++ Q+F
Sbjct: 217 GRNARNNNNNRSKYHNHFHHNQQHPQQPMVKLQQQF 252
Score = 79 (32.9 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 34/139 (24%), Positives = 53/139 (38%)
Query: 108 AATNSSSHKQVSNNANPNSTTNH---AASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVE 164
+ T S K ++N N N + N+ A+S + R H N Q G E
Sbjct: 90 SGTKRSGSKNGASNGNSNKSKNNKTAASSTSSSNANRKKKHHQHNAKKQQQMKKDG--FE 147
Query: 165 GRSNNPSPRDHT-QKSGFGSQFHGGNDHPHPRGSF-KHRNGNQHPRGDGSHHHNYGGRRD 222
+D T Q++G +Q PH R H + + P+ H+ N G
Sbjct: 148 SAVGEEDSKDATSQENGQSTQ---QQQPPHHRNHHHSHHHNSNGPQRRKFHNSNNAGM-P 203
Query: 223 QDRGNQDWNSHRNYSGRDA 241
Q++G + Y GR+A
Sbjct: 204 QNQGFPP--QFKPYQGRNA 220
>UNIPROTKB|F1MR14 [details] [associations]
symbol:F1MR14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:DAAA02016483 EMBL:DAAA02016480 EMBL:DAAA02016481
EMBL:DAAA02016482 IPI:IPI00691372 Ensembl:ENSBTAT00000012693
ArrayExpress:F1MR14 Uniprot:F1MR14
Length = 578
Score = 152 (58.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 35/80 (43%), Positives = 54/80 (67%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + IV Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 31 QVLADIVKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 90
Query: 383 ALRSSTVVEV--QGDRIRKR 400
AL+SS VVE+ +G RIR++
Sbjct: 91 ALKSSAVVELDLEGTRIRRK 110
>UNIPROTKB|Q4G0J3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
Genevestigator:Q4G0J3 Uniprot:Q4G0J3
Length = 582
Score = 151 (58.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 33 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 92
Query: 383 ALRSSTVVEV--QGDRIRKR 400
ALRSS VVE+ +G RIR++
Sbjct: 93 ALRSSAVVELDLEGTRIRRK 112
>ZFIN|ZDB-GENE-030131-6403 [details] [associations]
symbol:larp6 "La ribonucleoprotein domain family,
member 6" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001756 "somitogenesis" evidence=IMP]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
ZFIN:ZDB-GENE-030131-6403 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0001756 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 CTD:55323 HOGENOM:HOG000010108
HOVERGEN:HBG070244 OMA:TSGGENE EMBL:BC056595 IPI:IPI00487082
RefSeq:NP_956197.1 UniGene:Dr.6975 ProteinModelPortal:Q6PHD4
GeneID:334471 KEGG:dre:334471 InParanoid:Q6PHD4 NextBio:20810417
ArrayExpress:Q6PHD4 Uniprot:Q6PHD4
Length = 485
Score = 148 (57.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
PDP+L ++V QI+YY S+ENL D FL +++ + G+V ++L+ F KV LT + +
Sbjct: 74 PDPELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTRDWRT 133
Query: 380 ILDALRSSTVVEV--QGDRIRKRNDWMRWIMPPGKFSSLPS 418
ALR S ++E+ +G ++R+R+ +P SLPS
Sbjct: 134 TAYALRHSNLLELNDEGRKVRRRST-----VPVFASESLPS 169
>MGI|MGI:107634 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0035562 "negative regulation of chromatin binding"
evidence=IGI] [GO:0036093 "germ cell proliferation" evidence=IMP]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107634 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 CTD:51574
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 ChiTaRS:LARP7 EMBL:AC113952 EMBL:BC020127
EMBL:BC023165 EMBL:BC029178 EMBL:AK012726 EMBL:AK012772
EMBL:AK015041 EMBL:AK162147 IPI:IPI00340860 IPI:IPI00831552
RefSeq:NP_613059.2 UniGene:Mm.291032 ProteinModelPortal:Q05CL8
SMR:Q05CL8 IntAct:Q05CL8 STRING:Q05CL8 PhosphoSite:Q05CL8
PaxDb:Q05CL8 PRIDE:Q05CL8 DNASU:28036 Ensembl:ENSMUST00000029588
GeneID:28036 KEGG:mmu:28036 UCSC:uc008rhd.1
GeneTree:ENSGT00530000063464 InParanoid:Q05CL8 OMA:NNPPEDA
NextBio:306558 Bgee:Q05CL8 CleanEx:MM_LARP7 Genevestigator:Q05CL8
Uniprot:Q05CL8
Length = 570
Score = 149 (57.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 27 QVLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 86
Query: 383 ALRSSTVVEV--QGDRIRKR 400
AL+SS+VVE+ +G RIR++
Sbjct: 87 ALKSSSVVELDLEGTRIRRK 106
>RGD|1592474 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0035562
"negative regulation of chromatin binding" evidence=ISO]
[GO:0036093 "germ cell proliferation" evidence=ISO] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 149 (57.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 28 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 87
Query: 383 ALRSSTVVEV--QGDRIRKR 400
AL+SS+VVE+ +G RIR++
Sbjct: 88 ALKSSSVVELDLEGTRIRRK 107
>UNIPROTKB|Q5XI01 [details] [associations]
symbol:Larp7 "La-related protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 149 (57.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 28 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 87
Query: 383 ALRSSTVVEV--QGDRIRKR 400
AL+SS+VVE+ +G RIR++
Sbjct: 88 ALKSSSVVELDLEGTRIRRK 107
>UNIPROTKB|I3LNK9 [details] [associations]
symbol:I3LNK9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464
Ensembl:ENSSSCT00000031777 OMA:NASEECE Uniprot:I3LNK9
Length = 580
Score = 149 (57.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 33 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIAR 92
Query: 383 ALRSSTVVEV--QGDRIRKR 400
AL+SS VVE+ +G RIR++
Sbjct: 93 ALKSSAVVELDLEGTRIRRK 112
>UNIPROTKB|E2QW27 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AAEX03016829 ProteinModelPortal:E2QW27
Ensembl:ENSCAFT00000018607 Uniprot:E2QW27
Length = 582
Score = 149 (57.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 32 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 91
Query: 383 ALRSSTVVEV--QGDRIRKR 400
AL+SS+VVE+ +G RIR++
Sbjct: 92 ALKSSSVVELDLEGTRIRRK 111
>UNIPROTKB|F1S150 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA EMBL:FP236150
Ensembl:ENSSSCT00000009986 Uniprot:F1S150
Length = 582
Score = 149 (57.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 33 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIAR 92
Query: 383 ALRSSTVVEV--QGDRIRKR 400
AL+SS VVE+ +G RIR++
Sbjct: 93 ALKSSAVVELDLEGTRIRRK 112
>UNIPROTKB|E1BQG3 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AADN02009328 IPI:IPI00680045 Ensembl:ENSGALT00000019679
ArrayExpress:E1BQG3 Uniprot:E1BQG3
Length = 602
Score = 148 (57.2 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 35 QVLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 94
Query: 383 ALRSSTVVEV--QGDRIRKR 400
A++SS+VVE+ +G RIR+R
Sbjct: 95 AVKSSSVVELDLEGTRIRRR 114
>ZFIN|ZDB-GENE-030131-223 [details] [associations]
symbol:ssb "Sjogren syndrome antigen B (autoantigen
La)" species:7955 "Danio rerio" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-223 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:CABZ01067486
EMBL:BC045392 IPI:IPI00506214 RefSeq:NP_955841.1 UniGene:Dr.3463
SMR:Q7ZTI0 STRING:Q7ZTI0 Ensembl:ENSDART00000041627 GeneID:321504
KEGG:dre:321504 InParanoid:Q7ZTI0 NextBio:20807405 Uniprot:Q7ZTI0
Length = 401
Score = 145 (56.1 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++ QI+YYF + NL +D FL++ + D GWVP+ + FN++ LT +I+++L
Sbjct: 10 LEKKVAEQIEYYFGDHNLPRDKFLKEQLQLDDGWVPLETMLKFNRLKSLTSEESVIVESL 69
Query: 385 -RSST-VVEVQGDRIRKRND 402
+S T ++E+ D+ + R D
Sbjct: 70 LKSKTGLLEISEDKTKIRRD 89
>UNIPROTKB|F1S1V1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS EMBL:CU466304
Ensembl:ENSSSCT00000017354 Uniprot:F1S1V1
Length = 402
Score = 145 (56.1 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 28/78 (35%), Positives = 52/78 (66%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ ++ FN+++ LT + +I++AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIIEAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++E+ D+ + R
Sbjct: 73 SKSKAELMEISEDKTKIR 90
>UNIPROTKB|E9PFH8 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916802
ProteinModelPortal:E9PFH8 SMR:E9PFH8 PRIDE:E9PFH8
Ensembl:ENST00000409005 ArrayExpress:E9PFH8 Bgee:E9PFH8
Uniprot:E9PFH8
Length = 361
Score = 144 (55.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 28/78 (35%), Positives = 52/78 (66%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ ++ FN+++ LT + +I++AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++E+ D+ + R
Sbjct: 73 SKSKAELMEISEDKTKIR 90
>UNIPROTKB|P10881 [details] [associations]
symbol:SSB "Lupus La protein homolog" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:X13698 EMBL:BC103234 IPI:IPI00687044 PIR:S03849
RefSeq:NP_788838.1 UniGene:Bt.15513 ProteinModelPortal:P10881
SMR:P10881 STRING:P10881 PRIDE:P10881 Ensembl:ENSBTAT00000011484
GeneID:338071 KEGG:bta:338071 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS NextBio:20812521 Uniprot:P10881
Length = 404
Score = 144 (55.7 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/78 (35%), Positives = 52/78 (66%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ ++ FN+++ LT + +I++AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++E+ D+ + R
Sbjct: 73 SKSKAELMEISEDKTKIR 90
>UNIPROTKB|E2RH09 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 OMA:ENAEMKS EMBL:AAEX03017743
RefSeq:XP_535952.2 ProteinModelPortal:E2RH09
Ensembl:ENSCAFT00000038572 GeneID:478787 KEGG:cfa:478787
Uniprot:E2RH09
Length = 406
Score = 144 (55.7 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/78 (35%), Positives = 52/78 (66%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ ++ FN+++ LT + +I++AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++E+ D+ + R
Sbjct: 73 SKSKAELMEISEDKTKIR 90
>UNIPROTKB|P05455 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=TAS] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0006400 "tRNA modification"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471058 GO:GO:0030529 GO:GO:0006400 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 CTD:6741
HOGENOM:HOG000006947 HOVERGEN:HBG001407 OMA:ENAEMKS EMBL:X13697
EMBL:J04205 EMBL:BT009862 EMBL:AB451228 EMBL:AC009967 EMBL:BC001289
EMBL:BC020818 EMBL:M20328 IPI:IPI00009032 PIR:A31888
RefSeq:NP_003133.1 UniGene:Hs.632535 PDB:1OWX PDB:1S79 PDB:1S7A
PDB:1YTY PDB:1ZH5 PDB:2VOD PDB:2VON PDB:2VOO PDB:2VOP PDBsum:1OWX
PDBsum:1S79 PDBsum:1S7A PDBsum:1YTY PDBsum:1ZH5 PDBsum:2VOD
PDBsum:2VON PDBsum:2VOO PDBsum:2VOP DisProt:DP00229
ProteinModelPortal:P05455 SMR:P05455 DIP:DIP-29750N IntAct:P05455
MINT:MINT-5002383 STRING:P05455 PhosphoSite:P05455 DMDM:125985
PaxDb:P05455 PeptideAtlas:P05455 PRIDE:P05455 DNASU:6741
Ensembl:ENST00000260956 Ensembl:ENST00000409333 GeneID:6741
KEGG:hsa:6741 UCSC:uc002ufk.3 GeneCards:GC02P170619 HGNC:HGNC:11316
HPA:CAB004643 HPA:HPA012385 HPA:HPA017287 MIM:109090
neXtProt:NX_P05455 PharmGKB:PA36140 InParanoid:P05455
OrthoDB:EOG4C2HB3 PhylomeDB:P05455 EvolutionaryTrace:P05455
GenomeRNAi:6741 NextBio:26296 PMAP-CutDB:P05455 ArrayExpress:P05455
Bgee:P05455 CleanEx:HS_SSB Genevestigator:P05455
GermOnline:ENSG00000138385 GO:GO:0008334 Uniprot:P05455
Length = 408
Score = 144 (55.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/78 (35%), Positives = 52/78 (66%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ ++ FN+++ LT + +I++AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++E+ D+ + R
Sbjct: 73 SKSKAELMEISEDKTKIR 90
>UNIPROTKB|F1MAB1 [details] [associations]
symbol:Ssb "Lupus La protein homolog" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 RGD:620804
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 IPI:IPI00196913 PRIDE:F1MAB1
Ensembl:ENSRNOT00000010625 ArrayExpress:F1MAB1 Uniprot:F1MAB1
Length = 381
Score = 143 (55.4 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ + FN+++ LT + +I+ AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQAL 72
Query: 385 RSS--TVVEVQGDRIRKR 400
S ++EV D+ + R
Sbjct: 73 SKSKANLMEVSADKTKIR 90
>RGD|620804 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 RGD:620804 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0030529 GO:GO:0008033
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OrthoDB:EOG4C2HB3 EMBL:X67859 IPI:IPI00212219
PIR:JC1494 UniGene:Rn.24494 ProteinModelPortal:P38656 SMR:P38656
DIP:DIP-46500N STRING:P38656 PhosphoSite:P38656 PRIDE:P38656
UCSC:RGD:620804 InParanoid:P38656 ArrayExpress:P38656
Genevestigator:P38656 GermOnline:ENSRNOG00000007998 Uniprot:P38656
Length = 415
Score = 143 (55.4 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ + FN+++ LT + +I+ AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQAL 72
Query: 385 RSS--TVVEVQGDRIRKR 400
S ++EV D+ + R
Sbjct: 73 SKSKANLMEVSADKTKIR 90
>UNIPROTKB|Q66HM7 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:620804 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 EMBL:CH473949 InterPro:IPR006630 PROSITE:PS50961
KO:K11090 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 CTD:6741
HOVERGEN:HBG001407 OMA:ENAEMKS UniGene:Rn.24494 EMBL:BC081780
IPI:IPI00471902 RefSeq:NP_112381.2 SMR:Q66HM7 STRING:Q66HM7
Ensembl:ENSRNOT00000011174 GeneID:81783 KEGG:rno:81783
InParanoid:Q66HM7 NextBio:615635 Genevestigator:Q66HM7
Uniprot:Q66HM7
Length = 415
Score = 143 (55.4 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ + FN+++ LT + +I+ AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQAL 72
Query: 385 RSS--TVVEVQGDRIRKR 400
S ++EV D+ + R
Sbjct: 73 SKSKANLMEVSADKTKIR 90
>SGD|S000002209 [details] [associations]
symbol:LHP1 "RNA binding protein required for maturation of
tRNA and U6 snRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0000049 "tRNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008033 "tRNA processing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 SGD:S000002209 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0030529 GO:GO:0008033 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:L33023 EMBL:Z74099 EMBL:AY558373
EMBL:L13282 EMBL:X80801 PIR:B48600 RefSeq:NP_010232.1
ProteinModelPortal:P33399 SMR:P33399 DIP:DIP-6444N IntAct:P33399
MINT:MINT-652314 STRING:P33399 PaxDb:P33399 PeptideAtlas:P33399
EnsemblFungi:YDL051W GeneID:851509 KEGG:sce:YDL051W CYGD:YDL051w
OMA:NDGWVEL NextBio:968869 Genevestigator:P33399 GermOnline:YDL051W
Uniprot:P33399
Length = 275
Score = 139 (54.0 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 324 PQLHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILD 382
P++ R + Q+++YFS N D FLR + + GWVPI IA FN++ + +++
Sbjct: 27 PEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKYRP-VDKVIE 85
Query: 383 ALRSSTVVEVQ--GDRIRKR 400
ALRSS ++EV G+ +++R
Sbjct: 86 ALRSSEILEVSADGENVKRR 105
>MGI|MGI:98423 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:98423 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:L00993
EMBL:BC003820 EMBL:Y07951 IPI:IPI00134300 RefSeq:NP_001103615.1
RefSeq:NP_033304.1 UniGene:Mm.10508 ProteinModelPortal:P32067
SMR:P32067 DIP:DIP-37706N IntAct:P32067 STRING:P32067
PhosphoSite:P32067 PaxDb:P32067 PRIDE:P32067
Ensembl:ENSMUST00000090852 Ensembl:ENSMUST00000166411 GeneID:20823
KEGG:mmu:20823 InParanoid:P32067 ChiTaRS:SSB NextBio:299565
Bgee:P32067 CleanEx:MM_SSB Genevestigator:P32067
GermOnline:ENSMUSG00000068882 Uniprot:P32067
Length = 415
Score = 142 (55.0 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ + FN+++ LT + +I+ AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++EV D+ + R
Sbjct: 73 SKSKAKLMEVSADKTKIR 90
>UNIPROTKB|Q9BRS8 [details] [associations]
symbol:LARP6 "La-related protein 6" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
PROSITE:PS50102 GO:GO:0005634 GO:GO:0005794 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 EMBL:AF443828 EMBL:AF443829
EMBL:AK002058 EMBL:AL833876 EMBL:AC009269 EMBL:AC090868
EMBL:BC006082 EMBL:BC009446 EMBL:BC014018 EMBL:BC039153
IPI:IPI00377127 IPI:IPI00414661 RefSeq:NP_060827.2
RefSeq:NP_932062.1 UniGene:Hs.416755 HSSP:P05455
ProteinModelPortal:Q9BRS8 SMR:Q9BRS8 STRING:Q9BRS8
PhosphoSite:Q9BRS8 DMDM:74752287 PaxDb:Q9BRS8 PRIDE:Q9BRS8
Ensembl:ENST00000299213 Ensembl:ENST00000344870 GeneID:55323
KEGG:hsa:55323 UCSC:uc002ass.3 CTD:55323 GeneCards:GC15M071123
HGNC:HGNC:24012 HPA:HPA020338 MIM:611300 neXtProt:NX_Q9BRS8
PharmGKB:PA142671568 eggNOG:NOG239004 HOGENOM:HOG000010108
HOVERGEN:HBG070244 InParanoid:Q9BRS8 OMA:TSGGENE OrthoDB:EOG4NGGMP
ChiTaRS:LARP6 GenomeRNAi:55323 NextBio:59586 ArrayExpress:Q9BRS8
Bgee:Q9BRS8 CleanEx:HS_LARP6 Genevestigator:Q9BRS8 Uniprot:Q9BRS8
Length = 491
Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
PD +L ++V QI++YFS+ENL KD FL +++ + G+V ++L+ F KV LT + +
Sbjct: 88 PDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 380 ILDALRSSTVVEVQGDRIRKR 400
AL+ S V+E+ D + R
Sbjct: 148 TAHALKYSVVLELNEDHRKVR 168
>UNIPROTKB|F1NWE6 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 OMA:TSGGENE
GeneTree:ENSGT00510000048191 EMBL:AADN02040372 EMBL:AADN02040373
EMBL:AADN02040374 EMBL:AADN02040375 EMBL:AADN02040376
EMBL:AADN02040377 EMBL:AADN02040378 EMBL:AADN02040379
IPI:IPI00582301 Ensembl:ENSGALT00000006440 Uniprot:F1NWE6
Length = 444
Score = 139 (54.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/83 (36%), Positives = 53/83 (63%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
P+ L ++V QI+YYFS+ENL KD FL +++ + G+V ++L+ F KV LT + +
Sbjct: 43 PENDLIQKLVAQIEYYFSDENLEKDAFLLKHVRRNKMGYVSVKLLTSFKKVKHLTRDWRT 102
Query: 380 ILDALRSSTVVEVQGD--RIRKR 400
AL+ S ++E+ D ++R++
Sbjct: 103 TTHALKYSDMLELNDDNRKVRRK 125
>UNIPROTKB|F1PKV9 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:AAEX03016265 Ensembl:ENSCAFT00000027928 Uniprot:F1PKV9
Length = 428
Score = 136 (52.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
PD +L ++V QI++YFS+ENL KD FL +++ + G+V ++L+ F KV LT + +
Sbjct: 24 PDQELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 83
Query: 380 ILDALRSSTVVEVQGDRIRKR 400
AL+ S +E+ D + R
Sbjct: 84 TAHALKYSVTLELNEDHRKVR 104
Score = 43 (20.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 218 GGRRDQDRGNQDW 230
GG ++D G Q+W
Sbjct: 9 GGENERDDGEQEW 21
>WB|WBGene00016653 [details] [associations]
symbol:C44E4.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
EMBL:FO080862 GO:GO:0030529 GO:GO:0040027 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
PIR:T30953 RefSeq:NP_491411.1 ProteinModelPortal:O01806 SMR:O01806
STRING:O01806 PaxDb:O01806 EnsemblMetazoa:C44E4.4 GeneID:172070
KEGG:cel:CELE_C44E4.4 UCSC:C44E4.4 CTD:172070 WormBase:C44E4.4
HOGENOM:HOG000022257 InParanoid:O01806 OMA:KSANSEI NextBio:873891
Uniprot:O01806
Length = 396
Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 26/78 (33%), Positives = 52/78 (66%)
Query: 329 RIVTQIDYYFSNENLVKDTFLRQNM-DDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSS 387
+I+ Q++YYF N NL +D FL++ + +D GWVPI + FN+++ ++ + + I +A+++S
Sbjct: 15 KIIKQLEYYFGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEKIANAVKNS 74
Query: 388 T--VVEVQGDRIR-KRND 402
++ V D + +RN+
Sbjct: 75 GSGIISVSEDNQKIRRNE 92
>UNIPROTKB|F1MBD0 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:DAAA02027971 IPI:IPI00826749 Ensembl:ENSBTAT00000005109
ArrayExpress:F1MBD0 Uniprot:F1MBD0
Length = 425
Score = 137 (53.3 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
PD +L ++V QI++YFS+ENL KD FL +++ + G+V ++L+ F KV LT + +
Sbjct: 21 PDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 80
Query: 380 ILDALRSSTVVEVQGDRIRKR 400
AL+ S +E+ D + R
Sbjct: 81 TAHALKYSVTLELNEDHRKVR 101
>UNIPROTKB|F1SIT3 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 CTD:55323 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:CU074280 EMBL:CU302364 RefSeq:XP_003121812.3
Ensembl:ENSSSCT00000005486 GeneID:100522415 KEGG:ssc:100522415
Uniprot:F1SIT3
Length = 492
Score = 137 (53.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
PD +L ++V QI++YFS+ENL KD FL +++ + G+V ++L+ F KV LT + +
Sbjct: 88 PDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 380 ILDALRSSTVVEVQGDRIRKR 400
AL+ S +E+ D + R
Sbjct: 148 TAHALKYSVTLELNEDHRKVR 168
>MGI|MGI:2443114 [details] [associations]
symbol:Larp4 "La ribonucleoprotein domain family, member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007010 "cytoskeleton organization" evidence=ISO]
[GO:0022604 "regulation of cell morphogenesis" evidence=ISO]
InterPro:IPR000504 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2443114
GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 HOGENOM:HOG000004803
HOVERGEN:HBG055137 CTD:113251 EMBL:AK049756 EMBL:AK141743
IPI:IPI00828620 RefSeq:NP_001019697.2 UniGene:Mm.28811
UniGene:Mm.490671 ProteinModelPortal:Q8BWW4 SMR:Q8BWW4
PhosphoSite:Q8BWW4 PaxDb:Q8BWW4 PRIDE:Q8BWW4 GeneID:207214
KEGG:mmu:207214 UCSC:uc007xql.1 InParanoid:Q8BWW4 OrthoDB:EOG44MXRZ
NextBio:371897 CleanEx:MM_LARP4 Genevestigator:Q8BWW4
GermOnline:ENSMUSG00000023025 Uniprot:Q8BWW4
Length = 719
Score = 139 (54.0 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 333 QIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV 392
Q+++ FS ENL KD +L MD +VPI +A ++ LT N LIL+ LRSS +V+V
Sbjct: 122 QLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQV 181
Query: 393 --QGDRIR 398
+G+++R
Sbjct: 182 DEKGEKVR 189
>UNIPROTKB|H9KZD5 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0022604
"regulation of cell morphogenesis" evidence=IEA] InterPro:IPR000504
SMART:SM00360 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063417 OMA:WTIANME EMBL:AADN02072425
EMBL:AADN02072426 Ensembl:ENSGALT00000009951 Uniprot:H9KZD5
Length = 750
Score = 139 (54.0 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 333 QIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV 392
Q+++ FS ENL KD +L MD +VPI IA + LT ++ LILD LRSS +V+V
Sbjct: 126 QLEFCFSRENLSKDLYLMSQMDSDQFVPIWTIANMEGIKKLTTDMDLILDVLRSSPMVQV 185
Query: 393 Q--GDRIR 398
G+++R
Sbjct: 186 DETGEKVR 193
>ZFIN|ZDB-GENE-030131-6896 [details] [associations]
symbol:larp7 "La ribonucleoprotein domain family,
member 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6896 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
EMBL:BC049455 IPI:IPI00509628 RefSeq:NP_956224.1 UniGene:Dr.29131
HSSP:Q7YZ92 ProteinModelPortal:Q7ZWE3 STRING:Q7ZWE3 PRIDE:Q7ZWE3
GeneID:334956 KEGG:dre:334956 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 InParanoid:Q7ZWE3 KO:K15191 OrthoDB:EOG4TXBS0
NextBio:20810607 ArrayExpress:Q7ZWE3 InterPro:IPR014886
Pfam:PF08777 Uniprot:Q7ZWE3
Length = 555
Score = 137 (53.3 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 29/80 (36%), Positives = 54/80 (67%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQ--GWVPIRLIAGFNKVSLLTDNIQLILD 382
QL S + Q++++F + NL KD F++ ++ G++ I ++ FN++ LT +++LI
Sbjct: 41 QLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIAR 100
Query: 383 ALRSSTVVEV--QGDRIRKR 400
AL++ST+VEV +G RIR++
Sbjct: 101 ALKNSTIVEVNDEGTRIRRK 120
>MGI|MGI:1914807 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 MGI:MGI:1914807 GO:GO:0005634
GO:GO:0005794 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HSSP:P05455 CTD:55323
eggNOG:NOG239004 HOGENOM:HOG000010108 HOVERGEN:HBG070244
OMA:TSGGENE OrthoDB:EOG4NGGMP EMBL:AK017372 EMBL:AK020966
EMBL:AK039614 EMBL:AK042616 EMBL:AK087521 EMBL:BC090615
IPI:IPI00309063 RefSeq:NP_080511.2 UniGene:Mm.44546
ProteinModelPortal:Q8BN59 SMR:Q8BN59 STRING:Q8BN59
PhosphoSite:Q8BN59 PaxDb:Q8BN59 PRIDE:Q8BN59
Ensembl:ENSMUST00000038407 GeneID:67557 KEGG:mmu:67557
UCSC:uc009pzh.1 GeneTree:ENSGT00510000048191 InParanoid:Q8BN59
NextBio:324917 Bgee:Q8BN59 CleanEx:MM_LARP6 Genevestigator:Q8BN59
Uniprot:Q8BN59
Length = 492
Score = 136 (52.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
PD +L ++V QI++YFS+ENL KD FL +++ + G+V ++L+ F KV LT + +
Sbjct: 88 PDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 380 ILDALRSSTVVEVQGDRIRKR 400
AL+ S +E+ D + R
Sbjct: 148 TAHALKYSVTLELNEDHRKVR 168
>RGD|1308414 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 RGD:1308414 GO:GO:0005634
GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:CH473975 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 CTD:55323 OMA:TSGGENE
OrthoDB:EOG4NGGMP GeneTree:ENSGT00510000048191 IPI:IPI00370054
RefSeq:NP_001101624.1 UniGene:Rn.33750 Ensembl:ENSRNOT00000017147
GeneID:315731 KEGG:rno:315731 UCSC:RGD:1308414 NextBio:669749
Uniprot:D3ZCR5
Length = 492
Score = 136 (52.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
PD +L ++V QI++YFS+ENL KD FL +++ + G+V ++L+ F KV LT + +
Sbjct: 88 PDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 380 ILDALRSSTVVEVQGDRIRKR 400
AL+ S +E+ D + R
Sbjct: 148 TAHALKYSVTLELNEDHRKVR 168
>RGD|1592944 [details] [associations]
symbol:LOC680385 "similar to Sjogren syndrome antigen B"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592944 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 OrthoDB:EOG4C2HB3 IPI:IPI00767397
RefSeq:XP_001058361.1 RefSeq:XP_002726506.1 PRIDE:D3ZLH9
Ensembl:ENSRNOT00000015427 GeneID:680385 KEGG:rno:680385
UCSC:RGD:1592944 OMA:ATESEKC NextBio:718589 Uniprot:D3ZLH9
Length = 402
Score = 133 (51.9 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWV + + FN+++ LT + +I+ AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPQDKFLKEQIKLDEGWVSLETMIKFNRLNRLTTDFNVIVQAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++EV D+ + R
Sbjct: 73 SKSKAKLMEVSADKTKIR 90
>DICTYBASE|DDB_G0281763 [details] [associations]
symbol:DDB_G0281763 "Lupus La protein" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 SMART:SM00360
dictyBase:DDB_G0281763 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
RefSeq:XP_640625.1 ProteinModelPortal:Q54TG6 STRING:Q54TG6
EnsemblProtists:DDB0233755 GeneID:8623235 KEGG:ddi:DDB_G0281763
InParanoid:Q54TG6 OMA:NDDANAC ProtClustDB:CLSZ2430537
Uniprot:Q54TG6
Length = 354
Score = 132 (51.5 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 29/80 (36%), Positives = 55/80 (68%)
Query: 328 SRIVTQIDYYFSNENLVKDTFLR----QNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDA 383
++I+ Q++YYFS+ N +D FLR +N+D+ ++ I +IA FN++ ++ ++QLI +A
Sbjct: 7 TQILKQVEYYFSDSNFPRDKFLRSEAAKNVDN--YISIDVIASFNRMKTISTDLQLITEA 64
Query: 384 LRSSTVVEVQGD-RIRKRND 402
L+ ST ++V D ++ +R D
Sbjct: 65 LKKSTRLQVSEDGKMVRRLD 84
>CGD|CAL0005700 [details] [associations]
symbol:SLF1 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0005700 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AACQ01000029 EMBL:AACQ01000028 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 RefSeq:XP_719801.1
RefSeq:XP_719918.1 ProteinModelPortal:Q5ADL6 GeneID:3638500
GeneID:3638613 KEGG:cal:CaO19.14118 KEGG:cal:CaO19.6826
eggNOG:NOG317739 HOGENOM:HOG000093975 Uniprot:Q5ADL6
Length = 397
Score = 132 (51.5 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 333 QIDYYFSNENLVKDTFLRQ--NMDDQGWVPIRLIAGFNKVSLLTDN---IQLILDALRSS 387
QI+YYFS ENL KDT+LR N D G + + + FN++ +LT+N L+L+++
Sbjct: 312 QIEYYFSTENLCKDTYLRSLFNKSD-GSIQLSQLLSFNRMRMLTNNGKYTNLVLESIEEI 370
Query: 388 TVVEVQGDRIRKRND------WMRWIM 408
++E+ D K ND W WI+
Sbjct: 371 PILELLLDENDKNNDSVRLVNWKSWII 397
>UNIPROTKB|Q5ADL6 [details] [associations]
symbol:SLF1 "Potential polysome-associated RNA binding
protein" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0005700 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AACQ01000029 EMBL:AACQ01000028 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 RefSeq:XP_719801.1
RefSeq:XP_719918.1 ProteinModelPortal:Q5ADL6 GeneID:3638500
GeneID:3638613 KEGG:cal:CaO19.14118 KEGG:cal:CaO19.6826
eggNOG:NOG317739 HOGENOM:HOG000093975 Uniprot:Q5ADL6
Length = 397
Score = 132 (51.5 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 333 QIDYYFSNENLVKDTFLRQ--NMDDQGWVPIRLIAGFNKVSLLTDN---IQLILDALRSS 387
QI+YYFS ENL KDT+LR N D G + + + FN++ +LT+N L+L+++
Sbjct: 312 QIEYYFSTENLCKDTYLRSLFNKSD-GSIQLSQLLSFNRMRMLTNNGKYTNLVLESIEEI 370
Query: 388 TVVEVQGDRIRKRND------WMRWIM 408
++E+ D K ND W WI+
Sbjct: 371 PILELLLDENDKNNDSVRLVNWKSWII 397
>UNIPROTKB|Q96J85 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AC090058 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000004803
UniGene:Hs.26613 DNASU:113251 GeneID:113251 KEGG:hsa:113251
CTD:113251 HGNC:HGNC:24320 PharmGKB:PA142671566 ChiTaRS:LARP4
GenomeRNAi:113251 NextBio:78808 RefSeq:NP_001164275.1 EMBL:AY004310
IPI:IPI01012507 SMR:Q96J85 STRING:Q96J85 Ensembl:ENST00000518561
HOVERGEN:HBG062469 Uniprot:Q96J85
Length = 375
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 333 QIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV 392
Q+++ FS ENL KD +L MD ++PI +A ++ LT + LIL+ LRSS +V+V
Sbjct: 56 QLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 115
Query: 393 --QGDRIR 398
+G+++R
Sbjct: 116 DEKGEKVR 123
>UNIPROTKB|F1MHD9 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 OMA:WTIANME
EMBL:DAAA02012927 IPI:IPI01002357 Ensembl:ENSBTAT00000022821
Uniprot:F1MHD9
Length = 621
Score = 133 (51.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
+L + Q+++ FS ENL KD +L MD +VPI +A ++ LT + LIL+ L
Sbjct: 117 ELKECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTDPDLILEVL 176
Query: 385 RSSTVVEV--QGDRIR 398
RSS +V+V +G+++R
Sbjct: 177 RSSPMVQVDEKGEKVR 192
>UNIPROTKB|E9PDG5 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AC090058 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 UniGene:Hs.26613
DNASU:113251 GeneID:113251 KEGG:hsa:113251 CTD:113251
HGNC:HGNC:24320 ChiTaRS:LARP4 GenomeRNAi:113251 NextBio:78808
IPI:IPI00418689 RefSeq:NP_001164275.1 ProteinModelPortal:E9PDG5
SMR:E9PDG5 Ensembl:ENST00000522085 ArrayExpress:E9PDG5 Bgee:E9PDG5
Uniprot:E9PDG5
Length = 445
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 333 QIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV 392
Q+++ FS ENL KD +L MD ++PI +A ++ LT + LIL+ LRSS +V+V
Sbjct: 126 QLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 185
Query: 393 --QGDRIR 398
+G+++R
Sbjct: 186 DEKGEKVR 193
>UNIPROTKB|F1M4K9 [details] [associations]
symbol:LOC683071 "Protein LOC683071" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 IPI:IPI00952080
Ensembl:ENSRNOT00000065149 Uniprot:F1M4K9
Length = 574
Score = 131 (51.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 333 QIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV 392
Q++ FS ENL KD +L MD +VPI IA ++ LT + LIL+ LRSS +V+V
Sbjct: 22 QLESCFSRENLSKDLYLISQMDSDQFVPIWTIANMEEIKKLTTDPDLILEVLRSSPMVQV 81
Query: 393 -QGDRIR 398
+G+++R
Sbjct: 82 DEGEKVR 88
>FB|FBgn0260771 [details] [associations]
symbol:Larp7 "La related protein 7" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0097322 "7SK snRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:AE014298 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 KO:K15191
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
GO:GO:0097322 EMBL:AY061107 RefSeq:NP_524795.2 UniGene:Dm.31047
SMR:Q9W362 IntAct:Q9W362 STRING:Q9W362 EnsemblMetazoa:FBtr0301275
GeneID:44900 KEGG:dme:Dmel_CG42569 UCSC:CG12058-RA
FlyBase:FBgn0260771 InParanoid:Q9W362 OMA:PGLIVEC OrthoDB:EOG4CVDQ5
GenomeRNAi:44900 NextBio:837804 Uniprot:Q9W362
Length = 595
Score = 131 (51.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALR 385
L + I Q+++YF + NL KD FLR+ ++ +VP+ + FNK+ LT ++Q I AL
Sbjct: 59 LFNSIRGQMEFYFGDANLSKDRFLRRYVEQDPYVPLEIFLTFNKIKTLTQDVQQIAKALS 118
Query: 386 SSTVVEVQGDRIR-KR 400
+S ++E+ ++ KR
Sbjct: 119 NSQLLELDETELKVKR 134
>RGD|1306654 [details] [associations]
symbol:Bub3 "budding uninhibited by benzimidazoles 3 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000070 "mitotic
sister chromatid segregation" evidence=ISO] [GO:0000776
"kinetochore" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0007059 "chromosome segregation" evidence=ISO] [GO:0008608
"attachment of spindle microtubules to kinetochore" evidence=ISO]
[GO:0051983 "regulation of chromosome segregation" evidence=ISO]
[GO:0071173 "spindle assembly checkpoint" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 RGD:1306654 Gene3D:2.130.10.10 SUPFAM:SSF50978
HOVERGEN:HBG002942 EMBL:AY325173 IPI:IPI00382243 UniGene:Rn.6897
ProteinModelPortal:Q7TP72 IntAct:Q7TP72 PRIDE:Q7TP72
UCSC:RGD:1306654 InParanoid:Q7TP72 ArrayExpress:Q7TP72
Genevestigator:Q7TP72 Uniprot:Q7TP72
Length = 628
Score = 131 (51.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 28/129 (21%), Positives = 61/129 (47%)
Query: 107 TAATNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGR 166
+++ NS+S+ SNN++ NST+N++ SN S NN++++SN S + +
Sbjct: 421 SSSNNSNSNNSNSNNSSSNSTSNNSNSNNSNSNNSNNNNNNSNNSNSNNSNSNSNNSNNK 480
Query: 167 SNNPSPRDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRG 226
++N + ++ S + + N+ S + N N + S +++ ++
Sbjct: 481 NSNNNSNNNNSNSNSNNSNNSSNNSSSSNNSNSNNNSNNSNNSNNSSNNSSSSNNSNNKN 540
Query: 227 NQDWNSHRN 235
N + N+ N
Sbjct: 541 NSNNNNSNN 549
Score = 126 (49.4 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 31/126 (24%), Positives = 57/126 (45%)
Query: 110 TNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNN 169
+NS+S+ + N+N NS N++ SN S +N+ SSSN ++ + SNN
Sbjct: 470 SNSNSNNSNNKNSNNNSNNNNSNSNSNNSNNSSNNSSSSNNSNSNNNSNNSNNSNNSSNN 529
Query: 170 PSPRDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGNQD 229
S +++ S + N++ + S + N N + + S +N + N +
Sbjct: 530 SSSSNNSNNKN-NSNNNNSNNNNNSNSSSSNNNSNSNNNSNSSSSNNNSSSNNNSNNNSN 588
Query: 230 WNSHRN 235
NS+ N
Sbjct: 589 NNSNSN 594
>FB|FBgn0011638 [details] [associations]
symbol:La "La autoantigen-like" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0008098
"5S rRNA primary transcript binding" evidence=NAS;IDA] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:AE014134 GO:GO:0000166 GO:GO:0003677 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:U07652 EMBL:L32988 PIR:A53773 PIR:A53781 RefSeq:NP_477014.1
RefSeq:NP_724257.1 UniGene:Dm.4836 ProteinModelPortal:P40796
SMR:P40796 DIP:DIP-19001N IntAct:P40796 MINT:MINT-785398
STRING:P40796 PaxDb:P40796 EnsemblMetazoa:FBtr0081373
EnsemblMetazoa:FBtr0081374 GeneID:35305 KEGG:dme:Dmel_CG10922
CTD:35305 FlyBase:FBgn0011638 InParanoid:P40796 OMA:EHNEERR
OrthoDB:EOG4GF1X7 PhylomeDB:P40796 GenomeRNAi:35305 NextBio:792866
Bgee:P40796 GermOnline:CG10922 GO:GO:0008098 Uniprot:P40796
Length = 390
Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 25/75 (33%), Positives = 48/75 (64%)
Query: 330 IVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSS 387
I+ Q++YYF + NL +D FLR+ + ++ GWVP+ ++ F +++ L+ ++ I+ AL S
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
Query: 388 T--VVEVQGDRIRKR 400
+VE+ D++ R
Sbjct: 114 EEGLVEISEDKLSLR 128
>UNIPROTKB|G3XAA8 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CH471111 GO:GO:0030529
EMBL:AC090058 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 RefSeq:NP_001164279.1 UniGene:Hs.26613 GeneID:113251
KEGG:hsa:113251 CTD:113251 HGNC:HGNC:24320 ChiTaRS:LARP4
GenomeRNAi:113251 NextBio:78808 ProteinModelPortal:G3XAA8
SMR:G3XAA8 PRIDE:G3XAA8 Ensembl:ENST00000293618 ArrayExpress:G3XAA8
Bgee:G3XAA8 Uniprot:G3XAA8
Length = 653
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 333 QIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV 392
Q+++ FS ENL KD +L MD ++PI +A ++ LT + LIL+ LRSS +V+V
Sbjct: 126 QLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 185
Query: 393 --QGDRIR 398
+G+++R
Sbjct: 186 DEKGEKVR 193
>UNIPROTKB|F1SH87 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417
EMBL:AEMK01178304 EMBL:CU856260 EMBL:CU984599
Ensembl:ENSSSCT00000000235 OMA:CKEYEIM Uniprot:F1SH87
Length = 699
Score = 131 (51.2 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 333 QIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV 392
Q+++ FS ENL KD +L MD ++PI +A ++ LT + LIL+ LRSS +V+V
Sbjct: 124 QLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 183
Query: 393 --QGDRIR 398
+G+++R
Sbjct: 184 DEKGEKVR 191
>UNIPROTKB|E2R028 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 CTD:113251
EMBL:AAEX03015048 EMBL:AAEX03015046 EMBL:AAEX03015047
RefSeq:XP_534803.2 Ensembl:ENSCAFT00000013044 GeneID:477609
KEGG:cfa:477609 Uniprot:E2R028
Length = 721
Score = 131 (51.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 333 QIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV 392
Q+++ FS ENL KD +L MD ++PI +A ++ LT + LIL+ LRSS +V+V
Sbjct: 123 QLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 182
Query: 393 --QGDRIR 398
+G+++R
Sbjct: 183 DEKGEKVR 190
>UNIPROTKB|F1PIU8 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 OMA:WTIANME
EMBL:AAEX03015048 EMBL:AAEX03015046 EMBL:AAEX03015047
Ensembl:ENSCAFT00000013013 Uniprot:F1PIU8
Length = 723
Score = 131 (51.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 333 QIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV 392
Q+++ FS ENL KD +L MD ++PI +A ++ LT + LIL+ LRSS +V+V
Sbjct: 125 QLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 184
Query: 393 --QGDRIR 398
+G+++R
Sbjct: 185 DEKGEKVR 192
>UNIPROTKB|Q71RC2 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IMP] [GO:0022604 "regulation
of cell morphogenesis" evidence=IMP] InterPro:IPR000504
PROSITE:PS50102 SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 EMBL:CH471111 GO:GO:0022604
EMBL:AC090058 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 HOGENOM:HOG000004803
HOVERGEN:HBG055137 EMBL:AK055521 EMBL:AK125113 EMBL:AK291746
EMBL:AF370416 EMBL:BX647457 EMBL:CR936626 IPI:IPI00043638
IPI:IPI00395347 IPI:IPI00797384 IPI:IPI00982060
RefSeq:NP_001164279.1 RefSeq:NP_443111.4 RefSeq:NP_954658.2
UniGene:Hs.26613 PDB:2CQK PDB:3PKN PDBsum:2CQK PDBsum:3PKN
ProteinModelPortal:Q71RC2 SMR:Q71RC2 IntAct:Q71RC2 STRING:Q71RC2
PhosphoSite:Q71RC2 DMDM:189047131 PaxDb:Q71RC2 PRIDE:Q71RC2
DNASU:113251 Ensembl:ENST00000347328 Ensembl:ENST00000398473
Ensembl:ENST00000429001 Ensembl:ENST00000518444
Ensembl:ENST00000520064 GeneID:113251 KEGG:hsa:113251
UCSC:uc001rwm.3 UCSC:uc001rws.2 UCSC:uc009zlr.1 CTD:113251
GeneCards:GC12P050794 HGNC:HGNC:24320 HPA:HPA039306 HPA:HPA039673
neXtProt:NX_Q71RC2 PharmGKB:PA142671566 OMA:WTIANME ChiTaRS:LARP4
EvolutionaryTrace:Q71RC2 GenomeRNAi:113251 NextBio:78808
PMAP-CutDB:Q71RC2 ArrayExpress:Q71RC2 Bgee:Q71RC2 CleanEx:HS_LARP4
Genevestigator:Q71RC2 GermOnline:ENSG00000161813 Uniprot:Q71RC2
Length = 724
Score = 131 (51.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 333 QIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV 392
Q+++ FS ENL KD +L MD ++PI +A ++ LT + LIL+ LRSS +V+V
Sbjct: 126 QLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 185
Query: 393 --QGDRIR 398
+G+++R
Sbjct: 186 DEKGEKVR 193
>ZFIN|ZDB-GENE-041008-244 [details] [associations]
symbol:zgc:162969 "zgc:162969" species:7955 "Danio
rerio" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 ZFIN:ZDB-GENE-041008-244
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
HOVERGEN:HBG070244 GeneTree:ENSGT00510000048191 EMBL:CU062501
IPI:IPI00500994 UniGene:Dr.75982 Ensembl:ENSDART00000004483
OMA:YEYLEGA Uniprot:A8B8W4
Length = 471
Score = 128 (50.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
P+ + +I TQ++ Y S+ENL D FL +++ + G+V ++L+ F K+ LT + +
Sbjct: 57 PNDDVTQQIATQLENYLSDENLSDDAFLLKHVQRNKMGYVSLKLLTSFKKIRDLTRDWRT 116
Query: 380 ILDALRSSTVVEVQ--GDRIRKRN---DWMRWIMPPGK 412
L A R+S +EV G ++R+R DW+ I P K
Sbjct: 117 TLAAARTSLQLEVNEMGTKVRRRTPVPDWLLCI-PTSK 153
>DICTYBASE|DDB_G0282811 [details] [associations]
symbol:gtaK "GATA zinc finger domain-containing
protein 11" species:44689 "Dictyostelium discoideum" [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000679 InterPro:IPR013088
Pfam:PF00320 PROSITE:PS00344 PROSITE:PS50114 SMART:SM00401
dictyBase:DDB_G0282811 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 Gene3D:3.30.50.10
GO:GO:0003700 GO:GO:0006351 eggNOG:COG5641 HSSP:P17679
EMBL:AB183264 RefSeq:XP_001134553.1 ProteinModelPortal:Q5KSV0
EnsemblProtists:DDB0232953 GeneID:8623761 KEGG:ddi:DDB_G0282811
OMA:CCACERY Uniprot:Q5KSV0
Length = 650
Score = 129 (50.5 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 30/140 (21%), Positives = 62/140 (44%)
Query: 110 TNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNN 169
TN++++ +NN N N+ +N+ +SN + NN+ ++S P P ++ ++
Sbjct: 129 TNNNNNNNNNNNNNNNNNSNNNSSNNNNNNNNNNNFNNSPTSSPTPYVPTTPLINSYPSS 188
Query: 170 PSP-RDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGNQ 228
P S F+ H HP + N N + +++HN + + N
Sbjct: 189 PFLINQQPLSSSTPFPFNHQPYHIHPFTTLSLNNSNGINNNNHNNNHNNSNNNNNNNSNS 248
Query: 229 DWNSHRNYSGRDAHMQPQRV 248
+ N+H N++ + + PQ +
Sbjct: 249 NSNNHNNHNNNNQSIVPQSI 268
>DICTYBASE|DDB_G0291342 [details] [associations]
symbol:tacA "transcription factor TacA" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071285 "cellular response to
lithium ion" evidence=IMP] [GO:0031150 "sorocarp stalk development"
evidence=IMP] [GO:0010629 "negative regulation of gene expression"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR006594 InterPro:IPR007087
InterPro:IPR013087 InterPro:IPR015880 PROSITE:PS00028
PROSITE:PS50157 PROSITE:PS50896 SMART:SM00355 SMART:SM00667
dictyBase:DDB_G0291342 GO:GO:0005829 GO:GO:0005634
EMBL:AAFI02000177 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5048
Gene3D:3.30.160.60 GO:GO:0010629 GO:GO:0071285 GO:GO:0031150
RefSeq:XP_635152.2 EnsemblProtists:DDB0304583 GeneID:8628098
KEGG:ddi:DDB_G0291342 InParanoid:Q54ET8 OMA:HGHHNHG Uniprot:Q54ET8
Length = 810
Score = 129 (50.5 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 35/134 (26%), Positives = 59/134 (44%)
Query: 111 NSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNNP 170
+ S + + + N+TTN+ +N S NN+++SSN +S + NN
Sbjct: 377 DKKSQFSIQSQNDDNNTTNNN-NNNNISNNNNNNNNSSN-------SSNNN---NHGNNR 425
Query: 171 SPRDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSH-HHNYGGRRDQDRG-NQ 228
+ +H+ + HG N H H H +G+ H G +H HHN+G + + G N
Sbjct: 426 NIHNHSHGHNQHNHGHGHNQHNHGHNHGHHNHGHGHNHGHHNHGHHNHGHNHNHNHGHNH 485
Query: 229 DWNSHRNYSGRDAH 242
+ +H N H
Sbjct: 486 NHGNHNNGQNTPIH 499
Score = 118 (46.6 bits), Expect = 0.00098, P = 0.00098
Identities = 33/129 (25%), Positives = 59/129 (45%)
Query: 110 TNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNN 169
TN++++ +SNN N N+ ++++++N RN H+ S+G Q G +N
Sbjct: 394 TNNNNNNNISNNNNNNNNSSNSSNNNNHGNNRN-IHNHSHGH-NQHNHGHGHNQHNHGHN 451
Query: 170 PSPRDHTQKSGFGSQFHG----GNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDR 225
+H G HG G++H H G H +GN H G + HN+
Sbjct: 452 HGHHNHGHGHNHGHHNHGHHNHGHNHNHNHGH-NHNHGN-HNNGQNTPIHNHFSSAPIPI 509
Query: 226 GNQDWNSHR 234
G+ + N+++
Sbjct: 510 GSNNNNNNK 518
>TAIR|locus:2051734 [details] [associations]
symbol:LARP6b "AT2G43970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:AC004005 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 UniGene:At.20914 EMBL:AF332565
EMBL:AF375410 EMBL:AF367277 EMBL:AY056238 EMBL:AY129474
IPI:IPI00531024 PIR:T00677 RefSeq:NP_566004.1 UniGene:At.20070
UniGene:At.74750 UniGene:At.74872 UniGene:At.74992
ProteinModelPortal:O80567 SMR:O80567 IntAct:O80567 PRIDE:O80567
EnsemblPlants:AT2G43970.1 GeneID:819002 KEGG:ath:AT2G43970
TAIR:At2g43970 HOGENOM:HOG000244026 InParanoid:O80567 OMA:HEEDDAT
PhylomeDB:O80567 ProtClustDB:CLSN2688918 ArrayExpress:O80567
Genevestigator:O80567 Uniprot:O80567
Length = 545
Score = 109 (43.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
P+ + +IV Q++YYFS+ NL L + + D +G+VPI ++A F K+ + +N
Sbjct: 190 PEDSIQ-KIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 248
Query: 380 ILDALRSST--VVEVQGDRIRK 399
+ L++S V G ++R+
Sbjct: 249 LAAVLQNSAKLFVSEDGKKVRR 270
Score = 57 (25.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 33/127 (25%), Positives = 51/127 (40%)
Query: 120 NNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQ--PPASQGSVVEG-RSNNPSPRDHT 176
++++ S+T A+S+ S+ R+ S S N G P+ P + + + R P P H
Sbjct: 21 SHSHSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTTPPLPQPPRMIIPPPPPHG 80
Query: 177 QKSGFGSQ--FHGGNDHPHPRGSFKHRNGNQHP--RGDGSHHHNYGGRRDQDRGNQDWNS 232
+ Q F+ P P N HP R HHHN R Q++ +
Sbjct: 81 MLHMYHHQPPFNTPVLGPVPIQPHLVPVQNHHPHHRFHQHHHHN----RHQNQQYVPVRN 136
Query: 233 HRNYSGR 239
H Y R
Sbjct: 137 HGEYQQR 143
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 122 (48.0 bits), Expect = 0.00021, P = 0.00021
Identities = 35/140 (25%), Positives = 65/140 (46%)
Query: 111 NSSSHKQVSNNANPNSTTNHAASNRQRSMKRNN---SHSSSNGGLPQPPASQGSVVEGRS 167
N+S+ +NN N N+ N +N + NN S SSSN S G+ +
Sbjct: 301 NNSNSNFNNNNGNFNNPFNFNGNNNNNNNNGNNYNNSGSSSNNNNNNNKNSNGN----HN 356
Query: 168 NNPSPRDHTQKSGFGSQFHGGNDHPHPRGSFKHR-NGNQHPRGD---GSHHHNYGGRRDQ 223
NN + ++ S +G+ ++ N++ + +F + NGN + + G ++NY +
Sbjct: 357 NNGNNFNNNYNSNYGNMYNNNNNNGNTNNNFNNNGNGNNNNNRNSYNGYDNNNYNNNNNN 416
Query: 224 DRGN--QDWNSHRNYSGRDA 241
+ N D+N + NY+G +
Sbjct: 417 NNNNFSDDYNGYNNYNGNSS 436
>DICTYBASE|DDB_G0280599 [details] [associations]
symbol:fhkB "forkhead-associated kinase protein B"
species:44689 "Dictyostelium discoideum" [GO:0016772 "transferase
activity, transferring phosphorus-containing groups" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004674 "protein serine/threonine
kinase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016301 "kinase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000253 InterPro:IPR000719
InterPro:IPR002290 InterPro:IPR008271 InterPro:IPR008984
InterPro:IPR011009 InterPro:IPR017441 Pfam:PF00069 Pfam:PF00498
PROSITE:PS00107 PROSITE:PS00108 PROSITE:PS50006 PROSITE:PS50011
SMART:SM00220 SMART:SM00240 dictyBase:DDB_G0280599 GO:GO:0005524
GenomeReviews:CM000152_GR eggNOG:COG0515 SUPFAM:SSF56112
GO:GO:0004674 Gene3D:2.60.200.20 SUPFAM:SSF49879 EMBL:AAFI02000037
InterPro:IPR020636 PANTHER:PTHR24347 HSSP:O43293
RefSeq:XP_001134559.1 ProteinModelPortal:Q1ZXH2
EnsemblProtists:DDB0233266 GeneID:8622630 KEGG:ddi:DDB_G0280599
InParanoid:Q1ZXH2 Uniprot:Q1ZXH2
Length = 1142
Score = 125 (49.1 bits), Expect = 0.00025, P = 0.00025
Identities = 25/125 (20%), Positives = 58/125 (46%)
Query: 111 NSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNNP 170
N++++ +NN N N+ N+ +N ++ NN ++++N + + + +NN
Sbjct: 953 NNNNNNNNNNNNNNNNNNNNNINNNNNNINNNNINNNNNNNNNNNNNTNTNNINNNNNNY 1012
Query: 171 SPRDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGNQDW 230
+ H + + H N+H H + N N + + +H+HN+ + + N +
Sbjct: 1013 N-NSHNHNNNNHNHNHNLNNHNHNNNHHHNHNHNHNHNHNHNHNHNHNHNHNHNHNNHNN 1071
Query: 231 NSHRN 235
N++ N
Sbjct: 1072 NNNNN 1076
Score = 121 (47.7 bits), Expect = 0.00069, P = 0.00069
Identities = 29/136 (21%), Positives = 59/136 (43%)
Query: 110 TNSSSHKQ-VSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSN 168
TN + KQ NN N N+ N+ +N + NN+ +++N + + + +N
Sbjct: 938 TNYALFKQNFDNNNNNNNNNNNNNNNNNNNNNNNNNINNNNNNINNNNINNNNNNNNNNN 997
Query: 169 NPSPRDHTQKSGFG---SQFHGGNDHPHPRGSFKHR-NGNQHPRGDGSHHHNYGGRRDQD 224
N + ++ + S H N+H H H N N H + +H+HN+ + +
Sbjct: 998 NNTNTNNINNNNNNYNNSHNHNNNNHNHNHNLNNHNHNNNHHHNHNHNHNHNHNHNHNHN 1057
Query: 225 RGNQDWNSHRNYSGRD 240
+ ++H N++ +
Sbjct: 1058 HNHNHNHNHNNHNNNN 1073
>POMBASE|SPAC57A10.10c [details] [associations]
symbol:sla1 "La protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0034307 "regulation
of ascospore formation" evidence=IMP] [GO:0034414 "tRNA 3'-trailer
cleavage, endonucleolytic" evidence=IMP] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IGI] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC57A10.10c GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0030529 GO:GO:0031137 InterPro:IPR006630
PROSITE:PS50961 EMBL:AF022949 EMBL:AB011371 PIR:T38937 PIR:T43542
RefSeq:NP_593315.1 ProteinModelPortal:P87058 STRING:P87058
PRIDE:P87058 EnsemblFungi:SPAC57A10.10c.1 GeneID:2541530
KEGG:spo:SPAC57A10.10c eggNOG:COG5193 HOGENOM:HOG000113277
KO:K11090 OMA:FFEENAG OrthoDB:EOG43JGF6 NextBio:20802627
GO:GO:0034307 GO:GO:0006386 GO:GO:0034414 Pfam:PF05383
SMART:SM00715 Uniprot:P87058
Length = 298
Score = 117 (46.2 bits), Expect = 0.00027, P = 0.00027
Identities = 26/76 (34%), Positives = 48/76 (63%)
Query: 328 SRIVTQIDYYFSNENLVKDTFL-RQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRS 386
+ ++ Q+++YFS+ NL D FL + + GWVPI+ IA F ++ ++ I++ALR
Sbjct: 65 AEVLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRFQP-LEAIVNALRK 123
Query: 387 ST-VVEVQ--GDRIRK 399
S ++EV G+++R+
Sbjct: 124 SPELLEVDEAGEKVRR 139
>FB|FBgn0033936 [details] [associations]
symbol:CG17386 species:7227 "Drosophila melanogaster"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
EMBL:AE013599 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
eggNOG:NOG239004 GeneTree:ENSGT00510000048191 EMBL:BT044172
RefSeq:NP_610964.1 UniGene:Dm.24512 SMR:A1Z9R1
EnsemblMetazoa:FBtr0087488 GeneID:36605 KEGG:dme:Dmel_CG17386
UCSC:CG17386-RA FlyBase:FBgn0033936 InParanoid:A1Z9R1 OMA:RTIVACD
OrthoDB:EOG4D51CP GenomeRNAi:36605 NextBio:799463 Uniprot:A1Z9R1
Length = 867
Score = 125 (49.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 26/83 (31%), Positives = 54/83 (65%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
P +L + I +++YFSNE+++KD FL +++ + +G+V ++L++ F +V LT ++
Sbjct: 277 PSEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKV 336
Query: 380 ILDALR-SSTVVEVQ--GDRIRK 399
+ DA+R S +E+ G ++R+
Sbjct: 337 VGDAVRRKSRKIELNDVGTKVRR 359
Score = 43 (20.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 109 ATNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGG 151
++N S+ + S +A P S T+H + +S SS G
Sbjct: 113 SSNGSTSEDTSPSAPPMSPTDHQLVDVGMGSSIGDSDESSEEG 155
>UNIPROTKB|Q81YQ6 [details] [associations]
symbol:BA_3482 "Uncharacterized protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
InterPro:IPR024449 Pfam:PF12791 RefSeq:NP_845763.1
RefSeq:YP_022643.1 DNASU:1084171 EnsemblBacteria:EBBACT00000011330
EnsemblBacteria:EBBACT00000013938 GeneID:1084171 GeneID:2817342
KEGG:ban:BA_3482 KEGG:bar:GBAA_3482 PATRIC:18784566
HOGENOM:HOG000094522 OMA:GRESQGN ProtClustDB:CLSK917044
BioCyc:BANT261594:GJ7F-3401-MONOMER Uniprot:Q81YQ6
Length = 440
Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
Identities = 43/147 (29%), Positives = 61/147 (41%)
Query: 106 GTAATNSSSHKQVSNNANPNSTTNHA--ASNRQRSMKRNNSHSSSNGGLPQPPASQGSVV 163
G + ++ Q NN + N+ N R + NN H N G SQG+
Sbjct: 297 GRESQQGNNGNQQGNNGRESQQGNNGNQQGNNGRGSQGNNGHQQENNGR----GSQGNNG 352
Query: 164 EGRSNN----PSPRDHTQKS-GFGSQFHGGNDH-PHPRGSFKHRNGNQH-PRGDGSHHHN 216
+ NN H Q++ G GSQ + GN + RGS + NGNQ G GS N
Sbjct: 353 NQQGNNGRGSQGNNGHQQENNGRGSQGNNGNQQGDNGRGSQQGNNGNQQGDNGRGSQKEN 412
Query: 217 YG--------GRRDQDRGNQDWNSHRN 235
G G + ++RG+Q N +N
Sbjct: 413 VGNEQGNNGRGSQQENRGHQQGNEKKN 439
>TIGR_CMR|BA_3482 [details] [associations]
symbol:BA_3482 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR InterPro:IPR024449 Pfam:PF12791
RefSeq:NP_845763.1 RefSeq:YP_022643.1 DNASU:1084171
EnsemblBacteria:EBBACT00000011330 EnsemblBacteria:EBBACT00000013938
GeneID:1084171 GeneID:2817342 KEGG:ban:BA_3482 KEGG:bar:GBAA_3482
PATRIC:18784566 HOGENOM:HOG000094522 OMA:GRESQGN
ProtClustDB:CLSK917044 BioCyc:BANT261594:GJ7F-3401-MONOMER
Uniprot:Q81YQ6
Length = 440
Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
Identities = 43/147 (29%), Positives = 61/147 (41%)
Query: 106 GTAATNSSSHKQVSNNANPNSTTNHA--ASNRQRSMKRNNSHSSSNGGLPQPPASQGSVV 163
G + ++ Q NN + N+ N R + NN H N G SQG+
Sbjct: 297 GRESQQGNNGNQQGNNGRESQQGNNGNQQGNNGRGSQGNNGHQQENNGR----GSQGNNG 352
Query: 164 EGRSNN----PSPRDHTQKS-GFGSQFHGGNDH-PHPRGSFKHRNGNQH-PRGDGSHHHN 216
+ NN H Q++ G GSQ + GN + RGS + NGNQ G GS N
Sbjct: 353 NQQGNNGRGSQGNNGHQQENNGRGSQGNNGNQQGDNGRGSQQGNNGNQQGDNGRGSQKEN 412
Query: 217 YG--------GRRDQDRGNQDWNSHRN 235
G G + ++RG+Q N +N
Sbjct: 413 VGNEQGNNGRGSQQENRGHQQGNEKKN 439
>DICTYBASE|DDB_G0287057 [details] [associations]
symbol:gtaN "GATA zinc finger domain-containing
protein 14" species:44689 "Dictyostelium discoideum" [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR000679 Pfam:PF00320
PROSITE:PS00344 PROSITE:PS50114 SMART:SM00401
dictyBase:DDB_G0287057 GenomeReviews:CM000153_GR GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 eggNOG:COG5641
EMBL:AAFI02000096 HSSP:P17679 RefSeq:XP_637400.1
ProteinModelPortal:Q54KX0 EnsemblProtists:DDB0220469 GeneID:8625931
KEGG:ddi:DDB_G0287057 OMA:GANEDHL Uniprot:Q54KX0
Length = 953
Score = 122 (48.0 bits), Expect = 0.00043, P = 0.00043
Identities = 26/124 (20%), Positives = 57/124 (45%)
Query: 112 SSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNNPS 171
+++ + NN N + NH +N Q + +NN++ +S Q + + ++NN +
Sbjct: 383 NTNQNNIQNNHNQQNNNNHQNNNNQNNNYQNNNNQNSGNNNNQ---NHHNNKFNQNNNHN 439
Query: 172 PRDHTQKSGFGSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGNQDWN 231
+H+ + + N++ H + H N N + + ++H+N +Q+ N N
Sbjct: 440 QNNHSNNQNKNNHNNNHNNNNHNNNN--HNNNNNNHNNNNNNHNNNNNHNNQNNHNNQNN 497
Query: 232 SHRN 235
+H N
Sbjct: 498 NHNN 501
>UNIPROTKB|Q86YZ3 [details] [associations]
symbol:HRNR "Hornerin" species:9606 "Homo sapiens"
[GO:0005509 "calcium ion binding" evidence=IEA] [GO:0031424
"keratinization" evidence=IEA] [GO:0001533 "cornified envelope"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] InterPro:IPR001240 InterPro:IPR001751
InterPro:IPR002048 InterPro:IPR011992 InterPro:IPR020922
PROSITE:PS00303 PROSITE:PS50222 Prosite:PS00018 GO:GO:0070062
GO:GO:0005509 Gene3D:1.10.238.10 InterPro:IPR018247 GO:GO:0006568
eggNOG:NOG12793 GO:GO:0017111 GO:GO:0001533 GO:GO:0031424
InterPro:IPR013787 Pfam:PF01023 GO:GO:0009143 HOGENOM:HOG000112590
OrthoDB:EOG4RJG10 GO:GO:0004640 EMBL:AB104446 EMBL:BR000036
EMBL:AL589986 IPI:IPI00398625 RefSeq:NP_001009931.1
UniGene:Hs.490162 ProteinModelPortal:Q86YZ3 SMR:Q86YZ3
IntAct:Q86YZ3 MINT:MINT-2809380 STRING:Q86YZ3 PhosphoSite:Q86YZ3
DMDM:45476906 UCD-2DPAGE:Q86YZ3 PaxDb:Q86YZ3 PRIDE:Q86YZ3
Ensembl:ENST00000368801 GeneID:388697 KEGG:hsa:388697
UCSC:uc001ezt.1 CTD:388697 GeneCards:GC01M152184 H-InvDB:HIX0200013
HGNC:HGNC:20846 HPA:HPA031469 neXtProt:NX_Q86YZ3
PharmGKB:PA134936141 InParanoid:Q86YZ3 OMA:NNYAIDS
GenomeRNAi:388697 NextBio:102292 ArrayExpress:Q86YZ3 Bgee:Q86YZ3
CleanEx:HS_HRNR Genevestigator:Q86YZ3 GermOnline:ENSG00000197915
Uniprot:Q86YZ3
Length = 2850
Score = 125 (49.1 bits), Expect = 0.00070, P = 0.00070
Identities = 43/154 (27%), Positives = 64/154 (41%)
Query: 107 TAATNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNS--HSSSNGGLPQPPAS-QGSVV 163
++ + SS +Q S+ S + H++ Q S S H G Q P+S Q
Sbjct: 386 SSGQHGSSSRQSSSYGQHESASRHSSGRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHGTG 445
Query: 164 EGRSNNPSPRDHTQKSGFGSQF-HGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRD 222
GRS++ P + SG+ S F H + H G +H +G+ H G G H G R
Sbjct: 446 FGRSSSSGP--YVSGSGYSSGFGHHESSSEHSSGYTQHGSGSGHSSGHGQH----GSRSG 499
Query: 223 QD-RGNQDWNSHRNYSGRDAHMQPQRVVQRFTRH 255
Q RG + +S + S H R +RH
Sbjct: 500 QSSRGERQGSSAGSSSSYGQHGSGSRQSLGHSRH 533
>DICTYBASE|DDB_G0283357 [details] [associations]
symbol:DDB_G0283357 "unknown" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0283357 EMBL:AAFI02000054 RefSeq:XP_639110.1
ProteinModelPortal:Q54R73 EnsemblProtists:DDB0302625 GeneID:8624043
KEGG:ddi:DDB_G0283357 OMA:NSANEND Uniprot:Q54R73
Length = 1247
Score = 121 (47.7 bits), Expect = 0.00076, P = 0.00076
Identities = 37/143 (25%), Positives = 68/143 (47%)
Query: 110 TNSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNN 169
+NSSS+ S+N N N+ N+ +N S +NS+ ++N S + +S N
Sbjct: 292 SNSSSNSSSSSNNNNNNNNNNN-NNNNSSSSSSNSNGNNNNNYHSYGYSNSKYNQQKSYN 350
Query: 170 PSPRDHTQKSGFG-SQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNY-GGRRDQDRGN 227
+P H SG G + ++ N++ + G+ NGN G+ S+ + + GG + Q+ N
Sbjct: 351 NAP--HQLNSGGGQNSYYNKNNYNNGNGNIG--NGNNSGSGNSSNSNGWSGGYQKQNGAN 406
Query: 228 QDWNSHRNYSGRDAHMQPQRVVQ 250
+ + + + QPQ+ Q
Sbjct: 407 RYQSQSQQQPQQQQQQQPQQPQQ 429
>DICTYBASE|DDB_G0281179 [details] [associations]
symbol:clkA "protein kinase, CMGC group"
species:44689 "Dictyostelium discoideum" [GO:0016772 "transferase
activity, transferring phosphorus-containing groups" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004674 "protein serine/threonine
kinase activity" evidence=IEA;ISS] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016301 "kinase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000719 InterPro:IPR008271
InterPro:IPR011009 InterPro:IPR017441 Pfam:PF00069 PROSITE:PS00107
PROSITE:PS00108 PROSITE:PS50011 dictyBase:DDB_G0281179
GO:GO:0005524 GenomeReviews:CM000152_GR eggNOG:COG0515
SUPFAM:SSF56112 EMBL:AAFI02000040 GO:GO:0004674 KO:K08287
HSSP:P49761 RefSeq:XP_640867.1 ProteinModelPortal:Q54UA9
EnsemblProtists:DDB0230105 GeneID:8622923 KEGG:ddi:DDB_G0281179
OMA:ICNENDY ProtClustDB:CLSZ2846791 Uniprot:Q54UA9
Length = 932
Score = 119 (46.9 bits), Expect = 0.00090, P = 0.00090
Identities = 32/140 (22%), Positives = 65/140 (46%)
Query: 111 NSSSHKQVSNNANPNSTTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNNP 170
NS+S+ ++N+N NS +N ++N + N+H S+NGG + V +NN
Sbjct: 264 NSNSNSNSNSNSNSNSNSNSNSNNNNYNNYGYNNHKSNNGG--NRYSDDDDNVFNNNNNN 321
Query: 171 SPRDHTQKSGFGSQFHGGNDHPHPRG------SFKHRNGNQHPRGDGSHHHNYGGRRDQD 224
+ ++ + + S + ND+ + G S + N N + + ++ +NY +
Sbjct: 322 NNNNNNNYNNYNSNNNYNNDYDYNDGKRANIYSRNNSNNNNNSKSGNNNSNNYNHNNSNN 381
Query: 225 RG--NQDWNSHRNYSGRDAH 242
G N N + NY+ +++
Sbjct: 382 NGGYNNYNNGYNNYNNNNSN 401
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.130 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 471 377 0.00089 117 3 11 23 0.46 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 89
No. of states in DFA: 613 (65 KB)
Total size of DFA: 261 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.11u 0.08s 41.19t Elapsed: 00:00:02
Total cpu time: 41.11u 0.08s 41.19t Elapsed: 00:00:02
Start: Sat May 11 16:01:12 2013 End: Sat May 11 16:01:14 2013