BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039779
(471 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 61/88 (69%)
Query: 319 FPAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQ 378
+P + L I QI+YYFS ENL +D FLR MD+QG++PI LIAGF +V LT N+
Sbjct: 208 YPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLN 267
Query: 379 LILDALRSSTVVEVQGDRIRKRNDWMRW 406
LIL+AL+ ST VE+ +++RK+ + +W
Sbjct: 268 LILEALKDSTEVEIVDEKMRKKIEPEKW 295
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALR 385
L I QI+YYFS +NL +D FLR+ MD G++PI LIA F++V LT +I LI AL+
Sbjct: 403 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 462
Query: 386 SSTVVEVQGDRIRKRNDWMRWIMPP 410
S VVE+ +++R+R + +W +PP
Sbjct: 463 DSKVVEIVDEKVRRREEPEKWPLPP 487
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALR 385
L I QI+YYFS +NL +D FLR+ MD G++PI LIA F++V LT +I LI AL+
Sbjct: 378 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 437
Query: 386 SSTVVEVQGDRIRKRNDWMRWIMP 409
S VVE+ +++R+R + +W +P
Sbjct: 438 DSKVVEMVEEKVRRREEPEKWPLP 461
>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1527.03 PE=1 SV=1
Length = 475
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 62/101 (61%), Gaps = 10/101 (9%)
Query: 330 IVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTV 389
+ +Q++YYFS ENL KD FLR++MDD+G+VP+ +A FN++ + ++ L+ A ++S +
Sbjct: 329 LTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAACKASDI 388
Query: 390 VEVQGD-------RIRKRNDWMRWIMPPG---KFSSLPSPQ 420
++V D ++R++ W WI+P KF PQ
Sbjct: 389 IDVAIDLQSPMSIKVRRKETWSPWILPSESRLKFEMAKYPQ 429
>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505
PE=1 SV=2
Length = 1531
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 51/87 (58%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLIL 381
P +L + TQ++YYFS ENL DT+L MD +VPI +A FN V LT++I LI
Sbjct: 264 PLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLIT 323
Query: 382 DALRSSTVVEVQGDRIRKRNDWMRWIM 408
+ LR S V+V +R R + R I+
Sbjct: 324 EVLRESPNVQVDDKGLRVRPNRKRCII 350
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 12/147 (8%)
Query: 302 ALRGVPFVAPIPPHAVFFPAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPI 361
L G + +P A + + I Q++YYFS +NL D FLR+ MD +G++P+
Sbjct: 707 VLMGTHYFGNVP--AAYIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPV 764
Query: 362 RLIAGFNKVSLLTDNIQLILDALRSSTVVEV-QGDRIRKRNDWMRWIM---------PPG 411
LIA F++V LT ++ +I++A++ S +E+ +G ++R + W + P
Sbjct: 765 TLIASFHRVLALTTDVAVIVNAIKESDKLELFEGYKVRTKTTPTTWPITEVPEVNEGEPK 824
Query: 412 KFSSLPSPQSQGKSGIDMLSAQVQSIS 438
+L Q + G + L Q ++ S
Sbjct: 825 AIGTLEQEQLEQNDGQEKLEEQTEADS 851
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDD--QGWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 27 QVLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 86
Query: 383 ALRSSTVVE--VQGDRIRKRN 401
AL+SS+VVE ++G RIR++
Sbjct: 87 ALKSSSVVELDLEGTRIRRKK 107
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDD--QGWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 33 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 92
Query: 383 ALRSSTVVE--VQGDRIRKRN 401
ALRSS VVE ++G RIR++
Sbjct: 93 ALRSSAVVELDLEGTRIRRKK 113
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDD--QGWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 33 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 92
Query: 383 ALRSSTVVE--VQGDRIRKRN 401
ALRSS VVE ++G RIR++
Sbjct: 93 ALRSSAVVELDLEGTRIRRKK 113
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDD--QGWVPIRLIAGFNKVSLLTDNIQLILD 382
Q+ + I Q+D++F + NL KD FLR+ ++ G+V I L+ FNK+ LT + +LI
Sbjct: 28 QVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIAR 87
Query: 383 ALRSSTVVE--VQGDRIRKRN 401
AL+SS+VVE ++G RIR++
Sbjct: 88 ALKSSSVVELDLEGTRIRRKK 108
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQN-MDDQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL+Q + D GWVP+ + FN++S LT + +IL AL
Sbjct: 12 LDTKICEQIEYYFGDHNLPRDKFLKQQVLLDNGWVPLETMIKFNRLSKLTTDFNIILQAL 71
Query: 385 RSST--VVEVQGDRIRKR 400
+ S ++E+ ++ + R
Sbjct: 72 KKSKTELLEINEEKCKIR 89
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
PD +L ++V QI++YFS+ENL KD FL +++ + G+V ++L+ F KV LT + +
Sbjct: 88 PDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 380 ILDALRSSTVVEVQGDRIRKR 400
AL+ S V+E+ D + R
Sbjct: 148 TAHALKYSVVLELNEDHRKVR 168
>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2
Length = 719
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALR 385
L + Q+++ FS ENL KD +L MD +VPI +A ++ LT N LIL+ LR
Sbjct: 115 LKECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLR 174
Query: 386 SSTVVEV--QGDRIR 398
SS +V+V +G+++R
Sbjct: 175 SSPMVQVDEKGEKVR 189
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDD--QGWVPIRLIAGFNKVSLLTDNIQLILD 382
QL + I Q+D++F + NL KD FLR+ ++ G++ I L+A FNK+ +T + +LI
Sbjct: 35 QLLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIAR 94
Query: 383 ALRSSTVVEVQ--GDRIRKR 400
A+++S+VVE+ G +IR+R
Sbjct: 95 AVKNSSVVEINLSGTKIRRR 114
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ ++ FN+++ LT + +I++AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++E+ D+ + R
Sbjct: 73 SKSKAELMEISEDKTKIR 90
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ ++ FN+++ LT + +I++AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++E+ D+ + R
Sbjct: 73 SKSKAELMEISEDKTKIR 90
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 322 PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQL 379
PD +L ++V QI++YFS+ENL KD FL +++ + G+V ++L+ F KV LT + +
Sbjct: 88 PDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 380 ILDALRSSTVVEVQGDRIRKR 400
AL+ S +E+ D + R
Sbjct: 148 TAHALKYSVTLELNEDHRKVR 168
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ + FN+++ LT + +I+ AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQAL 72
Query: 385 RSS--TVVEVQGDRIRKR 400
S ++EV D+ + R
Sbjct: 73 SKSKAKLMEVSADKTKIR 90
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 328 SRIVTQIDYYFSNENLVKDTFLRQN-MDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRS 386
++I QI+YYF + NL +D FL+Q + D GWVP+ + FN++S LT + IL AL+
Sbjct: 15 TKICEQIEYYFGDHNLPRDKFLKQQILLDDGWVPLETMIKFNRLSKLTTDFNTILQALKK 74
Query: 387 ST--VVEVQGDRIRKR 400
S ++E+ ++ + R
Sbjct: 75 SKTELLEINEEKCKIR 90
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILDAL 384
L ++I QI+YYF + NL +D FL++ + D+GWVP+ + FN+++ LT + +I+ AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQAL 72
Query: 385 RSST--VVEVQGDRIRKR 400
S ++EV D+ + R
Sbjct: 73 SKSKANLMEVSADKTKIR 90
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNM-DDQGWVPIRLIAGFNKVSLLTDNIQLILDA 383
+L + + Q++YYF + NL +D FL++ + D+GWVP+ ++ F ++ L+++ ++I+DA
Sbjct: 42 KLEASTIRQLEYYFGDANLARDKFLQEQISKDEGWVPVDVLLTFKRLKSLSEDKKVIVDA 101
Query: 384 LRSST--VVEVQGDRIRKR 400
+ S ++EV DR + R
Sbjct: 102 IEKSDEGLIEVSEDREKLR 120
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 326 LHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALR 385
L + Q+++ FS ENL KD +L MD ++PI +A ++ LT + LIL+ LR
Sbjct: 119 LKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLR 178
Query: 386 SSTVVEV--QGDRIR 398
SS +V+V +G+++R
Sbjct: 179 SSPMVQVDEKGEKVR 193
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 325 QLHSRIVTQIDYYFSNENLVKDTFLRQNMDD--QGWVPIRLIAGFNKVSLLTDNIQLILD 382
QL S + Q++++F + NL KD F++ ++ G++ I ++ FN++ LT +++LI
Sbjct: 41 QLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIAR 100
Query: 383 ALRSSTVVEV--QGDRIRKR 400
AL++ST+VEV +G RIR++
Sbjct: 101 ALKNSTIVEVNDEGTRIRRK 120
>sp|Q92615|LAR4B_HUMAN La-related protein 4B OS=Homo sapiens GN=LARP4B PE=1 SV=3
Length = 738
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 322 PDPQLHSRIVTQ--IDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQL 379
PD Q R V + +++ S ENL D +L MD +VPI +A + + L+ ++ L
Sbjct: 150 PDSQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDL 209
Query: 380 ILDALRSSTVVEV--QGDRIRKRNDWMRWIM 408
I++ LRS +V+V +G+++R + I+
Sbjct: 210 IVEVLRSLPLVQVDEKGEKVRPNQNRCIVIL 240
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 324 PQLHSRIVTQIDYYFSNENLVKDTFLRQNMD-DQGWVPIRLIAGFNKVSLLTDNIQLILD 382
P++ R + Q+++YFS N D FLR + + GWVPI IA FN++ + +++
Sbjct: 27 PEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKYRP-VDKVIE 85
Query: 383 ALRSSTVVEVQGD 395
ALRSS ++EV D
Sbjct: 86 ALRSSEILEVSAD 98
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 330 IVTQIDYYFSNENLVKDTFLRQNM--DDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSS 387
I+ Q++YYF + NL +D FLR+ + ++ GWVP+ ++ F +++ L+ ++ I+ AL S
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
Query: 388 T--VVEVQGDRI 397
+VE+ D++
Sbjct: 114 EEGLVEISEDKL 125
>sp|Q6A0A2|LAR4B_MOUSE La-related protein 4B OS=Mus musculus GN=Larp4b PE=1 SV=2
Length = 741
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 334 IDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEV- 392
+++ S ENL D +L MD +VPI +A + + L+ ++ LI++ LRS +V+V
Sbjct: 166 LEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVD 225
Query: 393 -QGDRIR 398
+G+++R
Sbjct: 226 EKGEKVR 232
>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRO9 PE=1 SV=2
Length = 434
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 318 FFPA-PDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLT-- 374
F+P P + I QI+YYFS ENL D +LR + G+ P+ LI+ F +V ++
Sbjct: 252 FYPVQPVLMAINNIARQIEYYFSEENLTVDNYLRSKLSKDGFAPLSLISKFYRVVNMSFG 311
Query: 375 DNIQLILDALR 385
+ LIL ALR
Sbjct: 312 GDTNLILAALR 322
>sp|Q01722|GCR2_YEAST Glycolytic genes transcriptional activator GCR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GCR2 PE=1
SV=1
Length = 534
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 57 GAAEMEPVMGAHSWPALSE--TTRGSSSSTKSSSDSLKGSVDGSSSSSVLQGTAATNSSS 114
G A +MG+ S P + E T+ GS++ TK++SDS G+ +G+SSS+ +A +N+S+
Sbjct: 54 GIANPTGLMGSDSTPNIDEIITSTGSNALTKTNSDSANGTPNGNSSST----SAISNASN 109
Query: 115 HKQVSNNANPNSTTNHAASNRQRS 138
NNA+ ++T+N + Q S
Sbjct: 110 PATTGNNASSSATSNGIYTQAQYS 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,217,289
Number of Sequences: 539616
Number of extensions: 10034914
Number of successful extensions: 143733
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 1865
Number of HSP's that attempted gapping in prelim test: 69345
Number of HSP's gapped (non-prelim): 32968
length of query: 471
length of database: 191,569,459
effective HSP length: 121
effective length of query: 350
effective length of database: 126,275,923
effective search space: 44196573050
effective search space used: 44196573050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)