BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039780
(701 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IFG|A Chain A, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|B Chain B, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|C Chain C, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|D Chain D, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|E Chain E, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|F Chain F, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|G Chain G, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|H Chain H, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|I Chain I, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|J Chain J, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|K Chain K, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|L Chain L, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|M Chain M, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|N Chain N, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|O Chain O, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|P Chain P, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFH|Q Chain Q, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|R Chain R, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|S Chain S, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|T Chain T, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|U Chain U, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|V Chain V, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|W Chain W, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|X Chain X, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|Y Chain Y, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|Z Chain Z, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|1 Chain 1, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|2 Chain 2, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|3 Chain 3, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|4 Chain 4, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|5 Chain 5, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|6 Chain 6, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
Length = 484
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 23/129 (17%)
Query: 431 SGSVIGQLTKLSSVKDVPKHLAEAIPNQV-------------GFFMTYVLTSGWASLSVE 477
SG+ +G L ++VK V H+A+A+ GFF VLT + V
Sbjct: 326 SGATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVA 385
Query: 478 IMQPFF----LLRNILKKFICRIKNNPPNGTLSFPYQTEVPRL------LLFGFLGFICS 527
+ F L R ++ + R+ N+ G ++ Y ++ R+ L +G +G
Sbjct: 386 KEETFGPLAPLFRFASEEELVRLANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTG 445
Query: 528 VMAPLILPF 536
+++ + PF
Sbjct: 446 LISNEVAPF 454
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWV 324
P ILS PD + G++ + + E+ +CF+T AA + H NP
Sbjct: 651 PTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRT-LQRFCAATLEHGMNP---- 705
Query: 325 TEMAPEPNDVLWSNLSIPYRQLLTQL 350
++P P +R+L+ Q+
Sbjct: 706 -PISPRPE----------WRELMDQM 720
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWV 324
P +LS PD + G++ + + E+ +CF+T AA + H NP
Sbjct: 669 PTHLALLSQPPDTINGSLRVTVQGEVIEQSFGEEHLCFRT-LQRFCAATLEHGMNP---- 723
Query: 325 TEMAPEPNDVLWSNLSIPYRQLLTQL 350
++P P +R+L+ Q+
Sbjct: 724 -PISPRPE----------WRELMDQM 738
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 161 LLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLS 220
+L+ + + +++I +HFTVL+ + + ++ +++S KE + S
Sbjct: 104 ILFLRNHNFDGLDVSWIYPDQKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVS-AG 162
Query: 221 HHMVHRSSRVQRLMNDAEKI 240
M+ S +V++L D + I
Sbjct: 163 RQMIDNSYQVEKLAKDLDFI 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,074,999
Number of Sequences: 62578
Number of extensions: 733322
Number of successful extensions: 2016
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2010
Number of HSP's gapped (non-prelim): 12
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)