Query 039780
Match_columns 701
No_of_seqs 289 out of 944
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1134 Uncharacterized conser 100.0 7E-112 2E-116 969.6 48.9 657 3-664 4-707 (728)
2 COG5594 Uncharacterized integr 100.0 8E-112 2E-116 935.1 43.2 613 2-626 20-722 (827)
3 PF02714 DUF221: Domain of unk 100.0 5.7E-59 1.2E-63 499.6 27.7 292 298-589 1-325 (325)
4 PF13967 RSN1_TM: Late exocyto 100.0 5.7E-35 1.2E-39 279.6 14.3 156 5-165 1-157 (157)
5 PF04547 Anoctamin: Calcium-ac 98.4 3.2E-05 6.8E-10 87.2 21.7 205 372-589 164-397 (452)
6 PF14703 DUF4463: Domain of un 96.5 0.0031 6.6E-08 53.6 4.0 22 223-244 1-22 (85)
7 KOG2513 Protein required for m 96.2 0.16 3.4E-06 57.4 16.5 213 375-596 312-564 (647)
8 TIGR01659 sex-lethal sex-letha 95.6 0.089 1.9E-06 57.0 11.0 139 182-328 103-272 (346)
9 PLN03134 glycine-rich RNA-bind 93.9 0.46 9.9E-06 44.8 9.8 76 186-328 34-111 (144)
10 PLN03120 nucleic acid binding 93.7 0.43 9.2E-06 49.0 9.8 33 186-223 4-36 (260)
11 PLN03121 nucleic acid binding 92.9 0.66 1.4E-05 46.9 9.6 35 185-224 4-38 (243)
12 KOG0122 Translation initiation 92.9 0.44 9.5E-06 47.8 8.0 77 185-328 188-266 (270)
13 TIGR01648 hnRNP-R-Q heterogene 92.2 0.74 1.6E-05 53.0 10.0 55 186-245 58-120 (578)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 92.1 0.82 1.8E-05 49.5 10.0 37 186-227 3-39 (352)
15 KOG0149 Predicted RNA-binding 91.6 0.44 9.5E-06 47.6 6.3 31 189-224 15-45 (247)
16 TIGR01661 ELAV_HUD_SF ELAV/HuD 90.9 0.76 1.6E-05 49.8 8.1 75 187-328 270-346 (352)
17 KOG0144 RNA-binding protein CU 90.8 1 2.2E-05 48.7 8.5 35 187-226 35-69 (510)
18 TIGR01628 PABP-1234 polyadenyl 90.5 0.88 1.9E-05 52.8 8.7 36 188-228 2-37 (562)
19 TIGR01648 hnRNP-R-Q heterogene 89.6 1.5 3.3E-05 50.6 9.4 38 294-331 268-307 (578)
20 KOG0125 Ataxin 2-binding prote 87.3 2.8 6E-05 44.0 8.5 87 187-342 97-195 (376)
21 KOG0117 Heterogeneous nuclear 86.8 2.8 6E-05 45.7 8.5 37 292-328 205-245 (506)
22 TIGR01628 PABP-1234 polyadenyl 86.7 2.9 6.2E-05 48.6 9.6 37 185-226 177-213 (562)
23 KOG4206 Spliceosomal protein s 86.2 0.88 1.9E-05 45.2 4.1 46 292-337 49-96 (221)
24 TIGR01645 half-pint poly-U bin 84.2 7.6 0.00017 45.2 11.1 45 292-336 243-289 (612)
25 PF12621 DUF3779: Phosphate me 82.5 0.9 1.9E-05 39.5 2.2 37 651-691 32-68 (95)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 82.0 4.4 9.6E-05 46.1 8.2 35 186-225 2-36 (481)
27 PF13893 RRM_5: RNA recognitio 81.6 2.6 5.6E-05 32.3 4.3 24 295-318 21-44 (56)
28 KOG0145 RNA-binding protein EL 79.9 11 0.00024 38.3 8.9 136 188-331 43-209 (360)
29 TIGR01622 SF-CC1 splicing fact 79.1 5.9 0.00013 44.6 8.0 35 185-224 88-122 (457)
30 PF07810 TMC: TMC domain; Int 77.6 6.5 0.00014 35.2 6.0 52 503-559 48-104 (111)
31 TIGR01642 U2AF_lg U2 snRNP aux 76.3 12 0.00026 42.8 9.5 36 293-328 335-372 (509)
32 PF04059 RRM_2: RNA recognitio 73.6 3.8 8.2E-05 35.8 3.4 25 294-318 44-68 (97)
33 smart00361 RRM_1 RNA recogniti 72.5 4.8 0.0001 32.5 3.6 26 293-318 35-60 (70)
34 TIGR01622 SF-CC1 splicing fact 72.4 16 0.00034 41.2 9.1 78 184-328 184-263 (457)
35 KOG0117 Heterogeneous nuclear 70.1 11 0.00023 41.4 6.4 75 266-344 94-177 (506)
36 KOG0127 Nucleolar protein fibr 69.1 14 0.0003 41.5 7.1 23 293-315 332-354 (678)
37 TIGR01649 hnRNP-L_PTB hnRNP-L/ 68.8 22 0.00047 40.5 9.2 38 185-227 274-312 (481)
38 PF00076 RRM_1: RNA recognitio 66.5 5.5 0.00012 31.3 2.8 27 292-318 36-62 (70)
39 KOG4211 Splicing factor hnRNP- 64.4 47 0.001 37.1 10.0 24 292-315 142-165 (510)
40 PF14259 RRM_6: RNA recognitio 63.9 6.5 0.00014 31.3 2.7 24 293-316 37-60 (70)
41 PF00076 RRM_1: RNA recognitio 63.4 11 0.00023 29.6 3.9 33 189-226 1-33 (70)
42 KOG0148 Apoptosis-promoting RN 63.3 14 0.00031 37.8 5.5 37 185-226 5-41 (321)
43 smart00362 RRM_2 RNA recogniti 58.9 16 0.00034 28.1 4.2 25 293-317 37-61 (72)
44 KOG0109 RNA-binding protein LA 58.3 24 0.00052 36.7 6.1 50 189-244 5-56 (346)
45 PF14259 RRM_6: RNA recognitio 58.0 14 0.00031 29.3 3.7 33 189-226 1-33 (70)
46 smart00360 RRM RNA recognition 57.2 13 0.00029 28.4 3.5 25 292-316 35-59 (71)
47 KOG0107 Alternative splicing f 56.8 11 0.00025 36.2 3.3 37 292-328 44-82 (195)
48 smart00362 RRM_2 RNA recogniti 56.4 16 0.00036 28.0 3.9 34 188-226 1-34 (72)
49 KOG0108 mRNA cleavage and poly 52.8 44 0.00094 37.4 7.6 35 187-226 19-53 (435)
50 cd00590 RRM RRM (RNA recogniti 49.9 21 0.00046 27.5 3.6 26 293-318 38-63 (74)
51 cd00590 RRM RRM (RNA recogniti 47.0 31 0.00066 26.6 4.1 34 188-226 1-34 (74)
52 PF14362 DUF4407: Domain of un 45.6 1.1E+02 0.0023 32.5 9.1 60 531-590 46-107 (301)
53 KOG0113 U1 small nuclear ribon 43.2 78 0.0017 33.2 7.0 64 186-316 101-164 (335)
54 KOG1457 RNA binding protein (c 41.8 31 0.00067 34.5 3.8 24 294-317 76-99 (284)
55 PF07292 NID: Nmi/IFP 35 domai 41.5 6 0.00013 33.8 -1.0 30 183-212 49-79 (88)
56 KOG0148 Apoptosis-promoting RN 38.2 2.3E+02 0.0049 29.5 9.3 40 185-229 61-100 (321)
57 KOG0132 RNA polymerase II C-te 37.7 1E+02 0.0022 36.5 7.6 42 292-333 454-499 (894)
58 PF01102 Glycophorin_A: Glycop 35.5 31 0.00068 31.4 2.6 21 12-32 74-94 (122)
59 KOG2514 Uncharacterized conser 34.0 50 0.0011 39.3 4.5 49 377-425 439-487 (861)
60 PF11823 DUF3343: Protein of u 33.3 70 0.0015 26.0 4.2 36 296-334 2-37 (73)
61 KOG0123 Polyadenylate-binding 32.9 90 0.0019 34.2 6.1 116 189-318 79-231 (369)
62 KOG4208 Nucleolar RNA-binding 31.7 47 0.001 32.9 3.3 26 292-317 89-114 (214)
63 TIGR01659 sex-lethal sex-letha 31.2 61 0.0013 35.2 4.4 37 185-226 192-228 (346)
64 PF11608 Limkain-b1: Limkain b 31.0 92 0.002 26.5 4.4 41 294-334 38-80 (90)
65 PF02654 CobS: Cobalamin-5-pho 24.9 3.9E+02 0.0086 27.1 8.9 107 514-622 104-215 (235)
66 PF06570 DUF1129: Protein of u 24.5 6.1E+02 0.013 25.1 10.0 21 600-620 182-202 (206)
67 COG0724 RNA-binding proteins ( 22.2 1.1E+02 0.0024 30.5 4.3 36 186-226 115-150 (306)
68 KOG0146 RNA-binding protein ET 22.1 82 0.0018 32.4 3.1 37 292-328 57-98 (371)
69 PF04059 RRM_2: RNA recognitio 21.7 96 0.0021 27.1 3.1 28 187-217 2-29 (97)
70 KOG0114 Predicted RNA-binding 21.3 1E+02 0.0023 27.2 3.1 26 294-319 56-81 (124)
71 KOG1548 Transcription elongati 20.9 1.1E+02 0.0024 32.7 3.9 27 292-318 311-337 (382)
72 PF15159 PIG-Y: Phosphatidylin 20.4 83 0.0018 25.9 2.2 26 525-550 43-68 (72)
73 KOG2591 c-Mpl binding protein, 20.1 1.7E+02 0.0037 33.4 5.2 23 295-317 212-234 (684)
No 1
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=7.4e-112 Score=969.65 Aligned_cols=657 Identities=36% Similarity=0.584 Sum_probs=584.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHcCCCCCcceecCcccccccccCCC-CCCccCCCCC-cchhhhhhcCChHHHHHhc
Q 039780 3 LSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNY-PPSLLRYLPS-PSWVVKAWETTEDDILALG 80 (701)
Q Consensus 3 ~~~~~tsl~in~~i~~~~~llF~~LR~~~~~~~vY~pr~~~~~~~~~~~-p~~~~~~~~~-f~Wi~~~~~~~e~~i~~~~ 80 (701)
.+++..+-.+|...+..++.+|.+++.+++|.++|.|++.+.+..+.+. ......+... ++|+.+++|++|+|++++|
T Consensus 4 ~~~~~~~s~~~~~~~~~~~~~~~~l~l~~~~~~vy~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wl~~~~k~~~~ei~~~~ 83 (728)
T KOG1134|consen 4 FESIGISSTLNLNSAFAFLFLFLFLRLQPRNFRVYLPIWSLKGLRSSPIESKVEPVPSSVNFGWLPALLKIPDEEILEHA 83 (728)
T ss_pred cccccccccccchhhHHHHHHHHHHHhhhcceEEEEeeeeeccccCcCccccCCCCCCcccccchHHHhcCCHHHHHHHh
Confidence 4445555667777777888888889889999999999998776542111 0000111223 9999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhheeeeeeeCCcccccCCCCCcccccccccccCCCcchHHHHHHHHHHHHHHHH
Q 039780 81 GMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACG 160 (701)
Q Consensus 81 GlDa~~flrfl~~~i~if~~~~i~~~~ILlPvn~~g~~~~~~~~~~~~l~~lTisNv~~~s~~lw~h~i~~~~~~~~~~~ 160 (701)
|+||++||||+++++++|+++++++++||+|||+++++..+. ..+++|++|++|++.+|+++|+|++++|++++++||
T Consensus 84 GlDa~~~L~~~~~~~~lf~~~~~l~~~illPVn~~~~~~~~~--~~~s~~~ls~snv~~~s~~lw~Hv~~~y~~~~~~~~ 161 (728)
T KOG1134|consen 84 GLDAYVFLRFLKLGIKLFAVLSLLSVPILLPVNWTNGNLELG--NEDSLDKLSISNVQPGSSLLWAHVFFTYLFTFFTLF 161 (728)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhheEEeeEEEecCccccc--ccchhhhhhheeccCCCCCEEEEeehhHHHHHHHHH
Confidence 999999999999999999999999999999999999876543 222799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHH
Q 039780 161 LLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI 240 (701)
Q Consensus 161 ~l~~e~~~~~~~R~~~l~~~~~~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~ 240 (701)
++++||+++.++|++|++++.+++++.|++++++|.....+..+..+++|+..++.++.++++++|..++.++.+++++.
T Consensus 162 ~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~k~ 241 (728)
T KOG1134|consen 162 ILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPPPDGVSVSVIVRHFFSLNHPVKVRSHQVVYNESKLSKLLSKLKKL 241 (728)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccCCCCCchhhHHhhhhhccCCceeehhHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999755555677888999999999999999999999999999999988
Q ss_pred -HHHh--cc--cccCCCCCCCCC----CCccCc-c--hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHH
Q 039780 241 -CRVF--KG--VSAEQKSKPCLL----PCFCGA-P--NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAA 308 (701)
Q Consensus 241 -~~~l--k~--~~~~~~~rp~~~----~~~~~~-~--~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A 308 (701)
.+++ ++ .....++||... |++|++ | +||++|+ ++++++|.++|+....+++.+.|||||+|+.+|
T Consensus 242 ~~~~l~~~~~~~~~~~~~rP~~k~~~~~l~gkkvdai~yy~~kl---~~l~~~i~~~~~~~~~~~~~~~aFVtf~sr~~A 318 (728)
T KOG1134|consen 242 RENKLYKEHKRLKSNPKKRPKRKLGFCGLFGKKVDAIDYYSEKL---QELSEDIEELRESLYEEKPLPAAFVTFKSRYGA 318 (728)
T ss_pred hHHHHHHhhhhhccccccCCcceeeeeeeecceecHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCceEEEEEEeeHHH
Confidence 4444 11 111122666532 455655 4 8999999 999999988887776668899999999999999
Q ss_pred HHHHHHhccCCCCceEEeeCCCCCCeeecccCCchhhh---------------------------hccHHhhHHhccccc
Q 039780 309 VVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL---------------------------LTQLEQLSHAFPFLK 361 (701)
Q Consensus 309 ~~a~q~~~~~~p~~~~v~~AP~P~DIiW~Nl~~~~~~r---------------------------ls~l~~L~~~~p~l~ 361 (701)
+.|+|..++.+|.+|.++.||||+||.|+|+.+++++| ++|+++|.+.+||++
T Consensus 319 ~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~l~nl~~l~~~~Pflk 398 (728)
T KOG1134|consen 319 AVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQALTNLEGLSKVFPFLK 398 (728)
T ss_pred HHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhh
Confidence 99999999999999999999999999999999998886 679999999999999
Q ss_pred ccchhhhHHHHHHhchHHHHHHHHHHHhHHHHHHHHHhcCCcchhhhHhhhcchhhhhhhhHHHHHHHhhhhHHHHhhhc
Q 039780 362 GMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKL 441 (701)
Q Consensus 362 ~~~~~~~~~~ii~g~lP~l~l~~l~~llP~i~~~ls~~eg~~t~S~~e~s~~~k~f~F~~vnvflv~~l~~s~~~~l~~~ 441 (701)
.+.+.++++++++|+||++++.++++++|.++++++++||+.|+|+.|++++.|+|+|+++|+|++++++|+++.++..+
T Consensus 399 ~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~sa~~~~~~~ 478 (728)
T KOG1134|consen 399 PILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGSALRQLLSI 478 (728)
T ss_pred hhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHH
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999988554
Q ss_pred -cCCCcHHHHHHHhcCchhHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHhhhcc-CCCC--CCCCC-CCCCCccchhHH
Q 039780 442 -SSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICR-IKNN--PPNGT-LSFPYQTEVPRL 516 (701)
Q Consensus 442 -~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~~~-~~~~--~~~~~-~~f~~g~~y~~~ 516 (701)
.+|.+++..+|.++|++++||++|++++|++|.++||+|+++|+++.+++.+.+ ++++ +.+++ +.+++|..||+.
T Consensus 479 l~~p~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~p~~~~~~g~~yP~~ 558 (728)
T KOG1134|consen 479 LSTPRLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYEPLSSFYFGTIYPRI 558 (728)
T ss_pred hcCHhHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhhcCCccccchhhhccHH
Confidence 468999999999999999999999999999999999999999999988887764 4443 34555 888999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheEEeccCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 039780 517 LLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPV 596 (701)
Q Consensus 517 l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~~~qi~~~g~f~lk~~~~ 596 (701)
+++++||++||++||+|+|||++||+++|+|||||++|||.++|||||++||.+++++++|++++|+||+|+|++|+.+.
T Consensus 559 ~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~ih~~ii~~l~l~ql~l~gl~~~k~~~~ 638 (728)
T KOG1134|consen 559 LLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDIHRRIIFGLILFQLILFGLFSLKKGAV 638 (728)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceehhHHHHHHHHHHHHHHHhhcCchhhhhhHHHHhhhchhhhhc-CChHHHhHhhhhcccCCccCCcc
Q 039780 597 ASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQG-GRMEEIYQQLKFAYCQFRLISLD 664 (701)
Q Consensus 597 ~~~~~~~l~i~ti~f~~~~~~~~~~~~~~~pl~~~~~~d~~~~~~-~~~~~~~~~~~~~y~~p~l~~~~ 664 (701)
.+.+++|++++|++||.+|+.+|.|.+.++|++++...|..|+.. ++++...+.+.++|.+|++.+.+
T Consensus 639 ~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 707 (728)
T KOG1134|consen 639 ASVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNMENLYNYLKSAYVLPVFLSGS 707 (728)
T ss_pred cchHHHHHHHHHHHHHHHHhhhccccccccchhhhhhccCCccccCCChhhccccccccccCccccccc
Confidence 999999999999999999999999999999999999988888744 44667788899999999997654
No 2
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=8.1e-112 Score=935.11 Aligned_cols=613 Identities=27% Similarity=0.394 Sum_probs=547.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHcCCCCCcceecCccccccccc-CCCCCCccCCCCCcchhhhhhcCChHHHHHhc
Q 039780 2 ELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASER-KNYPPSLLRYLPSPSWVVKAWETTEDDILALG 80 (701)
Q Consensus 2 ~~~~~~tsl~in~~i~~~~~llF~~LR~~~~~~~vY~pr~~~~~~~~-~~~p~~~~~~~~~f~Wi~~~~~~~e~~i~~~~ 80 (701)
+.+++.|++.+++.++++++++|++||+| ++++|+||+..+++++ .+.|. +.+.|||+.++++++|+.+++++
T Consensus 20 s~~~~~t~l~f~~~~~~~~l~~f~iLR~r--~k~lY~pr~~~~~~~~~~P~~~----~ss~~gWl~~L~~i~d~~~l~~a 93 (827)
T COG5594 20 STSAVITQLVFAGLIFLVFLILFLILRKR--WKRLYAPRTNFDGQNECLPEPN----PSSYWGWLEPLVKIPDEFLLQYA 93 (827)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHhcCcceeecCCCcccCCCC----ccchHHHHHHHHhCCHHHHHHHc
Confidence 47899999999999999999999999987 6799999999888762 22232 23569999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhheeeeeeeCCcccccC-CCCCcccccccccccCCCcchHHHHHHHHHHHHHHH
Q 039780 81 GMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHD-ISSETLEIFTIANVKESSEWLWTHCFALYVITCSAC 159 (701)
Q Consensus 81 GlDa~~flrfl~~~i~if~~~~i~~~~ILlPvn~~g~~~~~~~-~~~~~l~~lTisNv~~~s~~lw~h~i~~~~~~~~~~ 159 (701)
|+|||+||||+|||+++++++|+++++||+|||++.++..+.+ ...++++++|++|++. ++++|+|++.+|++.++++
T Consensus 94 GlD~y~fLrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~gn~~s~s~l~~Ls~~Nv~~-~n~~~aHvf~~~~f~~~vl 172 (827)
T COG5594 94 GLDGYFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKATNGNSDSESGLDKLSISNVSP-SNRLYAHVFLSWFFFGYVL 172 (827)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhHEeeeeeecccccccCCccchhhhhHhhhhcccC-CCceeeeeehhHHHHHHHH
Confidence 9999999999999999999999999999999998875432221 2457899999999987 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCC---------CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhH
Q 039780 160 GLLYFEHKSISRTRLAYITGSPP---------NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRV 230 (701)
Q Consensus 160 ~~l~~e~~~~~~~R~~~l~~~~~---------~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L 230 (701)
|.+++|++.+.++||++++++.+ +.++|||+++++|++.++ .+.+.++|++...+++.+..+|||.+.+
T Consensus 173 fii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~--~e~L~~~~~kl~~~~i~~~~l~~~~~~l 250 (827)
T COG5594 173 FIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS--DEELKELFDKLKVGEIDSDVLCRDLGTL 250 (827)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC--chhHHHHHhhcCeeeeccchhhhhhHHH
Confidence 99999999999999999998642 347899999999998776 4669999999988888888999999999
Q ss_pred HHHHHHHHHHHHHhc------------c---------c----c-----------cCCCCCCCCC------CCccCc-c--
Q 039780 231 QRLMNDAEKICRVFK------------G---------V----S-----------AEQKSKPCLL------PCFCGA-P-- 265 (701)
Q Consensus 231 ~~L~~~~e~~~~~lk------------~---------~----~-----------~~~~~rp~~~------~~~~~~-~-- 265 (701)
+++.++|.+..+|++ . . . .+.++||+++ |.+|++ |
T Consensus 251 ~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVdaI 330 (827)
T COG5594 251 QELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVDAI 330 (827)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceecHH
Confidence 999999987766651 1 0 0 0123466654 344555 4
Q ss_pred hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCCCceE-EeeCCCCCCeeecccCCchh
Q 039780 266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWV-TEMAPEPNDVLWSNLSIPYR 344 (701)
Q Consensus 266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~~-v~~AP~P~DIiW~Nl~~~~~ 344 (701)
+|+++++ ++++++|+..|+......++++|||||+|+..||+|+|.+..+++.... ++.||+|+||+|+|+..+++
T Consensus 331 ~y~s~~l---~~l~~~i~~~r~~~~~~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~Nl~ls~~ 407 (827)
T COG5594 331 DYYSAKL---TKLDAEIENARKSLYENTPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRK 407 (827)
T ss_pred HHHHHHH---HHHHHHHHHHHhCccccCccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccccchHHHH
Confidence 8999999 8899999888876655667889999999999999999999899987766 99999999999999999999
Q ss_pred hh---------------------------hccHHhhHHhcccccccch-hhhHHHHHHhchHHHHHHHHHHHhHHHHHHH
Q 039780 345 QL---------------------------LTQLEQLSHAFPFLKGMFK-KKFISHVVTGYLPSVILILFLYAAPPTMMVF 396 (701)
Q Consensus 345 ~r---------------------------ls~l~~L~~~~p~l~~~~~-~~~~~~ii~g~lP~l~l~~l~~llP~i~~~l 396 (701)
+| ++|+++|++.|||++.+.+ .|+++++++|+||++++.+++.++|++++++
T Consensus 408 ~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l~~ivP~fir~L 487 (827)
T COG5594 408 ERLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWL 487 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH
Confidence 88 6799999999999999876 5799999999999999999999999999999
Q ss_pred HHhcCCcchhhhHhhhcchhhhhhhhHHHHHHHhhhhHHHHh-hhccCCCcHHHHHHHhcCchhHHHHHHHHHHHhhhhh
Q 039780 397 STIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQL-TKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLS 475 (701)
Q Consensus 397 s~~eg~~t~S~~e~s~~~k~f~F~~vnvflv~~l~~s~~~~l-~~~~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~ 475 (701)
+.+||..|+|+.|+.++.|||.|+++|+|+|++++|++.+.+ +...+|.+++.+||+++|++|+||++||++||+++.+
T Consensus 488 s~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~~s~~~llA~~lpk~SnFfi~~iilqgl~~~~ 567 (827)
T COG5594 488 SYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEPTSIMTLLANNLPKASNFFISYIILQGLSGFP 567 (827)
T ss_pred HHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcChHhHHHHHHhccHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999877666 5567999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHhh-hccCCCC---CCCCCCCCCCccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 039780 476 VEIMQPFFLLRNILKKF-ICRIKNN---PPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQ 551 (701)
Q Consensus 476 ~~Ll~~~~li~~~~~~~-~~~~~~~---~~~~~~~f~~g~~y~~~l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~ 551 (701)
++|+|+++|+.+++..+ ..+|+|+ ++..++.|+||+.||+.+++++|+++||+|+|+|+.||++||++.|++|||+
T Consensus 568 ~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~ 647 (827)
T COG5594 568 GTLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYN 647 (827)
T ss_pred hHHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998766554 4566665 5778999999999999999999999999999999999999999999999999
Q ss_pred heEEeccCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHhccccccceehhHHHHHHHHHHHHHHHhhcCchhhhh
Q 039780 552 IINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKI 626 (701)
Q Consensus 552 llyvy~~~~esgG~~~~~~~~~~~~~l~~~qi~~~g~f~lk~~~~~~~~~~~l~i~ti~f~~~~~~~~~~~~~~~ 626 (701)
++||++.++||||++||+|++|+++|+++||+||+|+|++.++|+.+.+++|++.+|++||.+|++.|.|+.++.
T Consensus 648 l~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~~~f~pl~~~i 722 (827)
T COG5594 648 LIYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLSKYI 722 (827)
T ss_pred hhhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcceeEeehHHHHHHHHHHHHHHHHhhcccccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999776443
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=5.7e-59 Score=499.63 Aligned_cols=292 Identities=32% Similarity=0.642 Sum_probs=273.4
Q ss_pred EEEEeCCHHHHHHHHHHhccCCCCceEEeeCCCCCCeeecccCCchhhh---------------------------hccH
Q 039780 298 AFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL---------------------------LTQL 350 (701)
Q Consensus 298 aFVtF~s~~~A~~a~q~~~~~~p~~~~v~~AP~P~DIiW~Nl~~~~~~r---------------------------ls~l 350 (701)
|||||+++++|+.|+|..++++|.+|.+++||||+||+|+||+.+..+| ++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7999999999999999999999999999999999999999999998776 4567
Q ss_pred HhhHHhcccccccch-hhhHHHHHHhchHHHHHHHHHHHhHHHHHHHHHhcCCcchhhhHhhhcchhhhhhhhHHHHHHH
Q 039780 351 EQLSHAFPFLKGMFK-KKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNV 429 (701)
Q Consensus 351 ~~L~~~~p~l~~~~~-~~~~~~ii~g~lP~l~l~~l~~llP~i~~~ls~~eg~~t~S~~e~s~~~k~f~F~~vnvflv~~ 429 (701)
+++.+.+|+++++.+ ++...++++|++|+++++++|.++|.++++++++|||.|+|+.|+++++|+|+|+++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788889988854 4677899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhh-ccCCCcHHHHHHHhcCchhHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHhhhc-cCCCCC--C-CCC
Q 039780 430 LSGSVIGQLTK-LSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFIC-RIKNNP--P-NGT 504 (701)
Q Consensus 430 l~~s~~~~l~~-~~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~~-~~~~~~--~-~~~ 504 (701)
+++++++.++. +.+|+++.+.+|.++|++++||++|++++++.+.+++|+|++++++..++++.. +++|+. . .++
T Consensus 161 l~~~~~~~~~~~~~~~~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~ 240 (325)
T PF02714_consen 161 LAGTILSALKNIINNPGSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEP 240 (325)
T ss_pred hhHHHHHHHHHHHhCcchHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence 99999988844 558999999999999999999999999999999999999999999888887765 566652 3 499
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheEEeccCcCCCCccHHHHHHHHHHHHHHHHHH
Q 039780 505 LSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQII 584 (701)
Q Consensus 505 ~~f~~g~~y~~~l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~~~qi~ 584 (701)
++|+||..||..+++++|+++||+++|+++|+|++||++.|++||||++|||++++||||++||.+++++++|++++|++
T Consensus 241 ~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~~ 320 (325)
T PF02714_consen 241 PPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQFT 320 (325)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 039780 585 ALGIF 589 (701)
Q Consensus 585 ~~g~f 589 (701)
|+|+|
T Consensus 321 ~~g~f 325 (325)
T PF02714_consen 321 MIGLF 325 (325)
T ss_pred HHHhC
Confidence 99986
No 4
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=100.00 E-value=5.7e-35 Score=279.56 Aligned_cols=156 Identities=30% Similarity=0.497 Sum_probs=136.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCcceecCccccccc-ccCCCCCCccCCCCCcchhhhhhcCChHHHHHhcCch
Q 039780 5 AFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALAS-ERKNYPPSLLRYLPSPSWVVKAWETTEDDILALGGMD 83 (701)
Q Consensus 5 ~~~tsl~in~~i~~~~~llF~~LR~~~~~~~vY~pr~~~~~~-~~~~~p~~~~~~~~~f~Wi~~~~~~~e~~i~~~~GlD 83 (701)
|+.+|+++|++++++++++|++||+| +.++|+||...+++ .++++|. ...++|+|++++++++|+|++++||+|
T Consensus 1 s~~~sl~~~~~i~~~~~~~F~~lR~~--~~~iY~pR~~~~~~~~~~~~~~---~~~g~f~Wi~~~~~~~d~~i~~~~GlD 75 (157)
T PF13967_consen 1 SFLTSLAINLIIFLVLLLLFCILRKR--FPRIYQPRSYLPHPEPERPPPL---PSRGFFGWIKPVFKISDDEILRHCGLD 75 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--cHHhcccccccCCcccccCCCC---CCCCchHHHHHHHcCCHHHHHHHcCCC
Confidence 68999999999999999999999987 67899999987632 1222221 224579999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeeeeeCCcccccCCCCCcccccccccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 039780 84 ALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLY 163 (701)
Q Consensus 84 a~~flrfl~~~i~if~~~~i~~~~ILlPvn~~g~~~~~~~~~~~~l~~lTisNv~~~s~~lw~h~i~~~~~~~~~~~~l~ 163 (701)
|++|+||+|+++++|+++++++++||+|||++|++..+.....+++|++|++|++++++++|+|++++|+++++++++++
T Consensus 76 a~~flrflr~~~~~f~~~~i~~~~vLlPi~~~~~~~~~~~~~~~~l~~~tisnv~~~s~~lw~h~v~~~i~~~~~~~~l~ 155 (157)
T PF13967_consen 76 AYVFLRFLRMLIKIFLFLSILSLPVLLPINYTGGDDDGDSDNESGLDRLTISNVPKGSSRLWAHVVFAYIFTFYVLYLLW 155 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeeeEEeCCCCccccccccccccccHHhhcCCCCeehHHHHHHHHHHHHHHhhhe
Confidence 99999999999999999999999999999999887643222237999999999999999999999999999999999999
Q ss_pred HH
Q 039780 164 FE 165 (701)
Q Consensus 164 ~e 165 (701)
+|
T Consensus 156 ~E 157 (157)
T PF13967_consen 156 RE 157 (157)
T ss_pred eC
Confidence 86
No 5
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=98.38 E-value=3.2e-05 Score=87.18 Aligned_cols=205 Identities=13% Similarity=0.129 Sum_probs=135.2
Q ss_pred HHHhchHHHHHHHHHHHhHHHHHHHHHhcCCcchhhhHhhhcchhhhhhhhHHHHHHHhhhhHHHHh--hhccCCCcHHH
Q 039780 372 VVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQL--TKLSSVKDVPK 449 (701)
Q Consensus 372 ii~g~lP~l~l~~l~~llP~i~~~ls~~eg~~t~S~~e~s~~~k~f~F~~vnvflv~~l~~s~~~~l--~~~~~p~~i~~ 449 (701)
++.+++-++.+.+++.+.-.+...+.++|.|.|.++.|.+...|.|.|+++|.+.-.... +.+... +.+ +| +..+
T Consensus 164 ~~~~vl~~v~i~il~~iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~~~~~~~-~~-~~~~ 240 (452)
T PF04547_consen 164 LIPTVLNAVVILILNFIYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYGVRQEEC-QP-CLSR 240 (452)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccc-CC-CHHH
Confidence 333334444555566667778888999999999999999999999999999998643332 233322 111 22 2222
Q ss_pred HHHHhcCchhHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHhhh-c----cCC----CC------------CCCCCCCCC
Q 039780 450 HLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFI-C----RIK----NN------------PPNGTLSFP 508 (701)
Q Consensus 450 ~l~~~lp~~s~FFi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~-~----~~~----~~------------~~~~~~~f~ 508 (701)
| +.-+++.++++-+.+...|.+ .|.+....+++. . ++. ++ +-.+.++++
T Consensus 241 -L-------~~ql~~~~~~~qi~~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~ 310 (452)
T PF04547_consen 241 -L-------RIQLFTIMVTKQIINNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYD 310 (452)
T ss_pred -H-------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCC
Confidence 1 223344445554555555544 445444443331 1 111 00 012445555
Q ss_pred Cc---cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheEEeccC---cCCCCccHHHHHHHHHHHHHHHH
Q 039780 509 YQ---TEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKS---YESGGQYWPIAHKTIIASLVLTQ 582 (701)
Q Consensus 509 ~g---~~y~~~l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~llyvy~~~---~esgG~~~~~~~~~~~~~l~~~q 582 (701)
-. ..|..+..-+-....||++.|+...++++.-++-.-+|++.+++.++++ -.++=..|-.++.-+...-++..
T Consensus 311 ~~g~~~dY~emviQFGyv~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN 390 (452)
T PF04547_consen 311 PDGLFDDYLEMVIQFGYVTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITN 390 (452)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHH
Confidence 43 7888888888889999999999999999999999999999999988643 23333569999998877777777
Q ss_pred HHHHHHH
Q 039780 583 IIALGIF 589 (701)
Q Consensus 583 i~~~g~f 589 (701)
..++++-
T Consensus 391 ~~li~~~ 397 (452)
T PF04547_consen 391 AALIAFT 397 (452)
T ss_pred HHHHHhh
Confidence 7777665
No 6
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=96.48 E-value=0.0031 Score=53.65 Aligned_cols=22 Identities=23% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEecchhHHHHHHHHHHHHHHh
Q 039780 223 MVHRSSRVQRLMNDAEKICRVF 244 (701)
Q Consensus 223 i~~~~~~L~~L~~~~e~~~~~l 244 (701)
||||+++|++|+++|++++++|
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kL 22 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKL 22 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999988
No 7
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=0.16 Score=57.38 Aligned_cols=213 Identities=15% Similarity=0.156 Sum_probs=115.9
Q ss_pred hchHHHHHHHHHHHhHHHHH----HHHHhcCCcchhhhHhhhcchhhhhhhhHHHHHHHhhhhHHHHhhhccCCCcHHHH
Q 039780 375 GYLPSVILILFLYAAPPTMM----VFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKH 450 (701)
Q Consensus 375 g~lP~l~l~~l~~llP~i~~----~ls~~eg~~t~S~~e~s~~~k~f~F~~vnvflv~~l~~s~~~~l~~~~~p~~i~~~ 450 (701)
.++|++++.++..++..+-+ +|.++|.|.|+|..+++...|.+.|+|+|.++--...+-... |-..+...
T Consensus 312 s~lP~iv~~~li~~~t~~Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~------d~~~Lk~~ 385 (647)
T KOG2513|consen 312 SYLPTIVYAVLIPVLTRIYKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLR------DMELLKQQ 385 (647)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cHHHHHHH
Confidence 67899998888877766655 556789999999999999999999999999864333321111 11112222
Q ss_pred HHHhcCchhHHH------HHHHHHHHhhhhhHHhhhhH--HHHHHHHH--hhhc-------cCCCC-C----------CC
Q 039780 451 LAEAIPNQVGFF------MTYVLTSGWASLSVEIMQPF--FLLRNILK--KFIC-------RIKNN-P----------PN 502 (701)
Q Consensus 451 l~~~lp~~s~FF------i~yii~~~~~~~~~~Ll~~~--~li~~~~~--~~~~-------~~~~~-~----------~~ 502 (701)
|+.-+-.+-.++ +.|...+.--+= ...|.. ...-.... .... +..|+ + ..
T Consensus 386 l~~~li~sQ~l~~~~e~~~p~f~~~~~r~~--~~~~f~t~~~ae~~~s~~~~i~~~~~~~~~~s~~~~a~~~~~~~qa~~ 463 (647)
T KOG2513|consen 386 LATLLITSQSLLNLMEIALPYFKIRTKRYE--NYIRFRTKSFAEELASAQAKIDGESPGFPAPSREPEAQLFPSLKQAEL 463 (647)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHhhhhhh--hhhhHHHHHHHHhhccchhhhcccccCCCCcccccchhhcccchhhhh
Confidence 222111100000 011111100000 000000 00000000 0000 00011 0 01
Q ss_pred CCCCCCCc---cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheEEeccC----cCCCCccHHHHHHHHH
Q 039780 503 GTLSFPYQ---TEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKS----YESGGQYWPIAHKTII 575 (701)
Q Consensus 503 ~~~~f~~g---~~y~~~l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~llyvy~~~----~esgG~~~~~~~~~~~ 575 (701)
+..--.|. ..|=.+.+-|-....||++.|+--.+|++-=.+.+=++-+.++.+..++ .++=|. |..++..+-
T Consensus 464 E~~~~~ydgtf~Dylel~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG~-Wq~~l~~lS 542 (647)
T KOG2513|consen 464 ESGLAEYDGTFDDYLELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIGA-WQNALELLS 542 (647)
T ss_pred cchhhhhcchhHHHHHHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhHH-HHHHHHHHH
Confidence 11112222 2344556667778899999999999999999999999999999888754 455554 877777765
Q ss_pred HHHHHHHHHHHHHHh-cccccc
Q 039780 576 ASLVLTQIIALGIFG-IKKSPV 596 (701)
Q Consensus 576 ~~l~~~qi~~~g~f~-lk~~~~ 596 (701)
+--++....++|+-. .++.|.
T Consensus 543 vls~vtncaLi~~~~~~~~~~~ 564 (647)
T KOG2513|consen 543 VLSCVTNCALIGMYPQVNKLWP 564 (647)
T ss_pred HHHHHHhHHHHhccccccccCc
Confidence 555555555555544 344443
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=95.58 E-value=0.089 Score=56.99 Aligned_cols=139 Identities=18% Similarity=0.224 Sum_probs=73.4
Q ss_pred CCCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhH-H--------HHHHHHHHHHHHhcccccCCC
Q 039780 182 PNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRV-Q--------RLMNDAEKICRVFKGVSAEQK 252 (701)
Q Consensus 182 ~~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L-~--------~L~~~~e~~~~~lk~~~~~~~ 252 (701)
...+..||.|.+||.+..+ +.|+++|+++. .|.++.++.|...= . +-.++.++++..|.+.....+
T Consensus 103 ~~~~~~~LfVgnLp~~~te---~~L~~lF~~~G--~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTD---RELYALFRTIG--PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCCCCcEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 3456789999999998764 78999999864 57888888764310 0 113455666666522111000
Q ss_pred ------CCCC-----CCCCccCc-chhh-hhhhcCccchhhh---hhhhh--hhhhhccCCceEEEEeCCHHHHHHHHHH
Q 039780 253 ------SKPC-----LLPCFCGA-PNSF-EILSNEPDNVRGN---IGLDI--SNLATEKENAVAFVCFKTRYAAVVAAEI 314 (701)
Q Consensus 253 ------~rp~-----~~~~~~~~-~~~y-~~~~~~~~~l~~~---i~~~~--~~~~~~~~~~~aFVtF~s~~~A~~a~q~ 314 (701)
.+|. ...+|.+. +... ++++ +++-++ |...+ .+....+..+.|||+|++..+|..|.+.
T Consensus 178 ~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L---~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 178 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQL---DTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred eeeeecccccccccccceeEEeCCCCcccHHHH---HHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 0110 00122222 1011 1111 111111 10000 0011234568999999999999999998
Q ss_pred hccCCC----CceEEeeC
Q 039780 315 LHSENP----MLWVTEMA 328 (701)
Q Consensus 315 ~~~~~p----~~~~v~~A 328 (701)
+..... ..+.|..|
T Consensus 255 lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 255 LNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred hCCCccCCCceeEEEEEC
Confidence 776532 23455555
No 9
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=93.92 E-value=0.46 Score=44.76 Aligned_cols=76 Identities=14% Similarity=0.294 Sum_probs=53.3
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP 265 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~ 265 (701)
..+|.|.|||.+..+ +.|+++|+++ +.+.++.++.|.
T Consensus 34 ~~~lfVgnL~~~~te---~~L~~~F~~~--G~I~~v~i~~d~-------------------------------------- 70 (144)
T PLN03134 34 STKLFIGGLSWGTDD---ASLRDAFAHF--GDVVDAKVIVDR-------------------------------------- 70 (144)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEEecC--------------------------------------
Confidence 468999999998764 7899999875 456666654320
Q ss_pred hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..+.|||+|++..+|+.|.+.+.... ...+.|+.|
T Consensus 71 ------------------------~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 71 ------------------------ETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 012345899999999999999998665442 234555555
No 10
>PLN03120 nucleic acid binding protein; Provisional
Probab=93.75 E-value=0.43 Score=48.99 Aligned_cols=33 Identities=30% Similarity=0.235 Sum_probs=26.1
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM 223 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i 223 (701)
.+||.|.|||.+..+ +.|++||+.+ |.+.++.+
T Consensus 4 ~rtVfVgNLs~~tTE---~dLrefFS~~--G~I~~V~I 36 (260)
T PLN03120 4 VRTVKVSNVSLKATE---RDIKEFFSFS--GDIEYVEM 36 (260)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEE
Confidence 579999999998664 7799999875 56666665
No 11
>PLN03121 nucleic acid binding protein; Provisional
Probab=92.95 E-value=0.66 Score=46.91 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=27.4
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV 224 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~ 224 (701)
.-|||.|+||+.+..+ +.|++||+.. |.+.++.+.
T Consensus 4 ~g~TV~V~NLS~~tTE---~dLrefFS~~--G~I~~V~I~ 38 (243)
T PLN03121 4 GGYTAEVTNLSPKATE---KDVYDFFSHC--GAIEHVEII 38 (243)
T ss_pred CceEEEEecCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 4589999999998764 7899999874 566666653
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=92.88 E-value=0.44 Score=47.77 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=55.3
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
+.-||.|+|+|.+.++ +.|++.|..+ +.+.++.+++|-
T Consensus 188 D~~tvRvtNLsed~~E---~dL~eLf~~f--g~i~rvylardK------------------------------------- 225 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMRE---DDLEELFRPF--GPITRVYLARDK------------------------------------- 225 (270)
T ss_pred ccceeEEecCccccCh---hHHHHHhhcc--CccceeEEEEcc-------------------------------------
Confidence 4469999999998775 5677777765 345677776540
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCCCc--eEEeeC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPML--WVTEMA 328 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~--~~v~~A 328 (701)
..+...|.|||||.++.+|+.|...+....-.+ ++|+.|
T Consensus 226 -------------------------~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 226 -------------------------ETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred -------------------------ccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 013456899999999999999998887665433 446665
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=92.18 E-value=0.74 Score=53.04 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=38.6
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHH--------HHHHHHHHHHHhc
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQR--------LMNDAEKICRVFK 245 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~--------L~~~~e~~~~~lk 245 (701)
..+|.|.|||.+..+ +.|.++|+++ +.+.++.+.+|.....+ -.+..+++++.++
T Consensus 58 ~~~lFVgnLp~~~tE---d~L~~~F~~~--G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~ln 120 (578)
T TIGR01648 58 GCEVFVGKIPRDLYE---DELVPLFEKA--GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLN 120 (578)
T ss_pred CCEEEeCCCCCCCCH---HHHHHHHHhh--CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcC
Confidence 479999999998764 7799999986 56788888887433222 1245566666663
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=92.06 E-value=0.82 Score=49.51 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=30.4
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRS 227 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~ 227 (701)
.-+|+|.|||.+..+ +.|+++|+++ |.+.++.+++|-
T Consensus 3 ~~~l~V~nLp~~~~e---~~l~~~F~~~--G~i~~v~i~~d~ 39 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQ---EEIRSLFTSI--GEIESCKLVRDK 39 (352)
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHcc--CCEEEEEEEEcC
Confidence 458999999998764 7899999986 578888888763
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=91.60 E-value=0.44 Score=47.56 Aligned_cols=31 Identities=13% Similarity=0.582 Sum_probs=23.5
Q ss_pred EEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780 189 VLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV 224 (701)
Q Consensus 189 VlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~ 224 (701)
|.|-|+|.+.+ +|.|++||+++ |++++..|+
T Consensus 15 ifVggL~w~T~---~~~l~~yFeqf--GeI~eavvi 45 (247)
T KOG0149|consen 15 IFVGGLAWETH---KETLRRYFEQF--GEIVEAVVI 45 (247)
T ss_pred EEEcCcccccc---hHHHHHHHHHh--CceEEEEEE
Confidence 89999999876 47899999987 455555553
No 16
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=90.86 E-value=0.76 Score=49.78 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=53.7
Q ss_pred eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcch
Q 039780 187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPN 266 (701)
Q Consensus 187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~ 266 (701)
++|.|.|||.+..+ +.|+++|+.+ |.+.++.+++|-
T Consensus 270 ~~lfV~NL~~~~~e---~~L~~~F~~f--G~v~~v~i~~d~--------------------------------------- 305 (352)
T TIGR01661 270 YCIFVYNLSPDTDE---TVLWQLFGPF--GAVQNVKIIRDL--------------------------------------- 305 (352)
T ss_pred cEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeEcC---------------------------------------
Confidence 47999999987654 7899999976 467777775430
Q ss_pred hhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeC
Q 039780 267 SFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMA 328 (701)
Q Consensus 267 ~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~A 328 (701)
..++..|.|||+|.+..+|..|.+.++...- ..+.|..+
T Consensus 306 -----------------------~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 306 -----------------------TTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred -----------------------CCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 0123458999999999999999998776532 23444443
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=90.80 E-value=1 Score=48.67 Aligned_cols=35 Identities=20% Similarity=0.501 Sum_probs=27.6
Q ss_pred eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
--+.|-.||+...+ +.|+++|++| +.|.++.+.+|
T Consensus 35 vKlfVgqIprt~sE---~dlr~lFe~y--g~V~einl~kD 69 (510)
T KOG0144|consen 35 VKLFVGQIPRTASE---KDLRELFEKY--GNVYEINLIKD 69 (510)
T ss_pred hhheeccCCccccH---HHHHHHHHHh--CceeEEEeecc
Confidence 34788999997654 6799999998 46788888776
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=90.46 E-value=0.88 Score=52.85 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=30.0
Q ss_pred eEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecch
Q 039780 188 TVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSS 228 (701)
Q Consensus 188 TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~ 228 (701)
||.|.|||.+..+ +.|+++|+++ |.+.+|.+++|..
T Consensus 2 sl~VgnLp~~vte---~~L~~~F~~~--G~v~~v~v~~d~~ 37 (562)
T TIGR01628 2 SLYVGDLDPDVTE---AKLYDLFKPF--GPVLSVRVCRDSV 37 (562)
T ss_pred eEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecCC
Confidence 7999999998764 7799999987 4688999998753
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=89.59 E-value=1.5 Score=50.56 Aligned_cols=38 Identities=26% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP 331 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P 331 (701)
..+.|||.|++..+|..|.+.+.... ...+.|..|..+
T Consensus 268 ~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 268 IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 45799999999999999998776553 345677887544
No 20
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=87.29 E-value=2.8 Score=43.96 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=60.5
Q ss_pred eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcch
Q 039780 187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPN 266 (701)
Q Consensus 187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~ 266 (701)
+-+.|+|||=+.+| ..|+..|+++ |.|++|.|++|-
T Consensus 97 kRLhVSNIPFrFRd---pDL~aMF~kf--G~VldVEIIfNE--------------------------------------- 132 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRD---PDLRAMFEKF--GKVLDVEIIFNE--------------------------------------- 132 (376)
T ss_pred ceeEeecCCccccC---ccHHHHHHhh--CceeeEEEEecc---------------------------------------
Confidence 45999999998776 4577788876 578888887650
Q ss_pred hhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeC----------CCCCCe
Q 039780 267 SFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMA----------PEPNDV 334 (701)
Q Consensus 267 ~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~A----------P~P~DI 334 (701)
.-..|.+||||++..+|..|.+.++.... .+..|..| |.|.-.
T Consensus 133 -------------------------RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~~~ 187 (376)
T KOG0125|consen 133 -------------------------RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKVLPYPN 187 (376)
T ss_pred -------------------------CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcccCCCcc
Confidence 01237899999999999999998886532 22223222 455556
Q ss_pred eecccCCc
Q 039780 335 LWSNLSIP 342 (701)
Q Consensus 335 iW~Nl~~~ 342 (701)
-|.++...
T Consensus 188 g~~~~~a~ 195 (376)
T KOG0125|consen 188 GWKLLPAV 195 (376)
T ss_pred ccccccch
Confidence 67776664
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=86.75 E-value=2.8 Score=45.65 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=29.3
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCCCCce----EEeeC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSENPMLW----VTEMA 328 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~----~v~~A 328 (701)
.|..|.|||.+.|-.+|.++.|.+...+-.-| .|.+|
T Consensus 205 ~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWA 245 (506)
T KOG0117|consen 205 TKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWA 245 (506)
T ss_pred ccccceEEEEeecchhHHHHHhhccCCceeecCCcceeecc
Confidence 56789999999999999999998877665433 45555
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=86.72 E-value=2.9 Score=48.59 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=28.3
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
...+|.|+|+|.+..+ +.|+++|+++ |.+.++.+.++
T Consensus 177 ~~~~l~V~nl~~~~te---e~L~~~F~~f--G~i~~~~i~~~ 213 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNE---DKLRELFAKF--GEITSAAVMKD 213 (562)
T ss_pred CCCeEEEeCCCCcCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 3457999999998754 7799999886 45677777665
No 23
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=86.16 E-value=0.88 Score=45.22 Aligned_cols=46 Identities=26% Similarity=0.185 Sum_probs=36.1
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeCCCCCCeeec
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMAPEPNDVLWS 337 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~AP~P~DIiW~ 337 (701)
.|..|.|||+|++..+|..|...++...- ..+++++|-+++||+=+
T Consensus 49 ~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 49 PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 45689999999999988888776665432 34678899999998866
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=84.19 E-value=7.6 Score=45.15 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=33.0
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCeee
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDVLW 336 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DIiW 336 (701)
++..|.|||.|.+..+|..|.+.+.... ....+|..|..|.|=.|
T Consensus 243 gksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~ 289 (612)
T TIGR01645 243 RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALL 289 (612)
T ss_pred CCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccC
Confidence 3467899999999999999998776553 34466777665555555
No 25
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=82.49 E-value=0.9 Score=39.51 Aligned_cols=37 Identities=22% Similarity=0.118 Sum_probs=29.3
Q ss_pred hhhcccCCccCCccccccccccccCCCCCCCchhhhhcCCc
Q 039780 651 LKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSEAETAGLT 691 (701)
Q Consensus 651 ~~~~y~~p~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 691 (701)
...+|.||+++... + ..|+|+|+.|++..|-+..+..
T Consensus 32 ~~~ay~~Pa~~~~~--P--~lWIP~D~~GvS~~ei~~~~~~ 68 (95)
T PF12621_consen 32 HKHAYLHPAVSAPQ--P--ILWIPRDPLGVSRQEIEETRKV 68 (95)
T ss_pred HHhccCCHhHcCCC--C--eEEeecCCCCCCHHHHHHhhcC
Confidence 46799999997633 3 6999999999998887766543
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=81.97 E-value=4.4 Score=46.10 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.9
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH 225 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~ 225 (701)
++||.|.|||.+..+ +.|++.|+.+ |.|.++.++.
T Consensus 2 s~vv~V~nLp~~~te---~~L~~~f~~f--G~V~~v~i~~ 36 (481)
T TIGR01649 2 SPVVHVRNLPQDVVE---ADLVEALIPF--GPVSYVMMLP 36 (481)
T ss_pred ccEEEEcCCCCCCCH---HHHHHHHHhc--CCeeEEEEEC
Confidence 479999999998764 7799999886 5677777664
No 27
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=81.62 E-value=2.6 Score=32.26 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.4
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
.+.|||+|.+..+|..|.+.++..
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 599999999999999999977654
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=79.88 E-value=11 Score=38.28 Aligned_cols=136 Identities=20% Similarity=0.260 Sum_probs=76.1
Q ss_pred eEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHH---------HHHHHHHHHHhcccccCC------C
Q 039780 188 TVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRL---------MNDAEKICRVFKGVSAEQ------K 252 (701)
Q Consensus 188 TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L---------~~~~e~~~~~lk~~~~~~------~ 252 (701)
.+.|.-+|....+ |.++..|... |+++++.++||--.=+.| -++.|+++..|.+.+... -
T Consensus 43 NLIvNYLPQ~MTq---dE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQ---DELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred eeeeeecccccCH---HHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3667888987654 7789988875 578899999884332222 256677776663222111 1
Q ss_pred CCCCCC-----CCccCc--chhhhhhhcCccchhhhhhh-hhhhh----hhccCCceEEEEeCCHHHHHHHHHHhccCCC
Q 039780 253 SKPCLL-----PCFCGA--PNSFEILSNEPDNVRGNIGL-DISNL----ATEKENAVAFVCFKTRYAAVVAAEILHSENP 320 (701)
Q Consensus 253 ~rp~~~-----~~~~~~--~~~y~~~~~~~~~l~~~i~~-~~~~~----~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p 320 (701)
-||..- .++-.. ..--++++ |++-...-. ..++. ......|.+||.|+.+.+|..|...+..++|
T Consensus 118 ARPSs~~Ik~aNLYvSGlPktMtqkel---E~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKTMTQKEL---EQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred ccCChhhhcccceEEecCCccchHHHH---HHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 244310 011000 00112222 322221100 01111 1144679999999999999999999999888
Q ss_pred Cce----EEeeCCCC
Q 039780 321 MLW----VTEMAPEP 331 (701)
Q Consensus 321 ~~~----~v~~AP~P 331 (701)
..+ .|..|-.|
T Consensus 195 ~g~tepItVKFannP 209 (360)
T KOG0145|consen 195 SGCTEPITVKFANNP 209 (360)
T ss_pred CCCCCCeEEEecCCc
Confidence 653 35555555
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=79.12 E-value=5.9 Score=44.58 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=27.0
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV 224 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~ 224 (701)
..+||.|.|||.+..+ +.|+++|+++ |.+.++.++
T Consensus 88 ~~~~l~V~nlp~~~~~---~~l~~~F~~~--G~v~~v~i~ 122 (457)
T TIGR01622 88 DDRTVFVLQLALKARE---RDLYEFFSKV--GKVRDVQCI 122 (457)
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEe
Confidence 3689999999998754 6799999886 366666664
No 30
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=77.64 E-value=6.5 Score=35.17 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=39.7
Q ss_pred CCCCCCCcc-----chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheEEeccC
Q 039780 503 GTLSFPYQT-----EVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKS 559 (701)
Q Consensus 503 ~~~~f~~g~-----~y~~~l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~llyvy~~~ 559 (701)
..++|+... .|.|.+ ..+|+.||++.|+ ++++-+++.+++.|+.+++.+.|+
T Consensus 48 g~~eF~i~~nvL~liY~Qtl--~WiG~ffsPlLP~---i~~ik~~i~FYvKk~sll~~c~p~ 104 (111)
T PF07810_consen 48 GKPEFDIPKNVLDLIYNQTL--VWIGMFFSPLLPA---INVIKLFILFYVKKFSLLYNCQPP 104 (111)
T ss_pred CCCCccHhhhHHHHHHcchh--hhhhHHhchhHHH---HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666554 455544 6889999888887 567788889999999999998875
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=76.32 E-value=12 Score=42.77 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=27.0
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~A 328 (701)
+..|.|||+|.+..+|..|.+.+..... ..+.|+.|
T Consensus 335 ~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 335 LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4468999999999999999988765543 33555555
No 32
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=73.63 E-value=3.8 Score=35.76 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=20.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
..|.|||-|.+..+|....+..++.
T Consensus 44 N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 44 NLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 4689999999999998888876544
No 33
>smart00361 RRM_1 RNA recognition motif.
Probab=72.55 E-value=4.8 Score=32.52 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.4
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
+..|.|||+|++..+|+.|.+.++..
T Consensus 35 ~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 35 HKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999999999999999987665
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=72.43 E-value=16 Score=41.16 Aligned_cols=78 Identities=13% Similarity=0.235 Sum_probs=52.4
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
+...||.|.|||.+..+ +.|+++|+.+ |.+.++.+.++-
T Consensus 184 p~~~~l~v~nl~~~~te---~~l~~~f~~~--G~i~~v~~~~d~------------------------------------ 222 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITE---QELRQIFEPF--GDIEDVQLHRDP------------------------------------ 222 (457)
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC------------------------------------
Confidence 44689999999987654 6788899865 345555443210
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..|.|||+|.+..+|..|.+.+.... ...+.|..|
T Consensus 223 --------------------------~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 223 --------------------------ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred --------------------------CCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 012345899999999999999998766532 223455554
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=70.06 E-value=11 Score=41.36 Aligned_cols=75 Identities=19% Similarity=0.120 Sum_probs=43.8
Q ss_pred hhhhhhhcCccchhhhh------hhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCc-eEEeeCCCCCCeee
Q 039780 266 NSFEILSNEPDNVRGNI------GLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPML-WVTEMAPEPNDVLW 336 (701)
Q Consensus 266 ~~y~~~~~~~~~l~~~i------~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~-~~v~~AP~P~DIiW 336 (701)
|-|++++ .-+-+++ |+.+ +.......|.|||||.+...|+.|...+.++ +|.+ +.|...-.-.-.+=
T Consensus 94 D~~EdeL---vplfEkiG~I~elRLMm-D~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFi 169 (506)
T KOG0117|consen 94 DVFEDEL---VPLFEKIGKIYELRLMM-DPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFI 169 (506)
T ss_pred cccchhh---HHHHHhccceeeEEEee-cccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEe
Confidence 6677766 4444443 2121 1122567899999999999999999988776 2222 22222222344555
Q ss_pred cccCCchh
Q 039780 337 SNLSIPYR 344 (701)
Q Consensus 337 ~Nl~~~~~ 344 (701)
.|+...+.
T Consensus 170 G~IPK~k~ 177 (506)
T KOG0117|consen 170 GNIPKTKK 177 (506)
T ss_pred ccCCcccc
Confidence 55555443
No 36
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=69.05 E-value=14 Score=41.54 Aligned_cols=23 Identities=39% Similarity=0.407 Sum_probs=19.7
Q ss_pred cCCceEEEEeCCHHHHHHHHHHh
Q 039780 293 KENAVAFVCFKTRYAAVVAAEIL 315 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~ 315 (701)
.+.|+|||-|+++.+|+.|....
T Consensus 332 ~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 332 HSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred CcccceEEEeccHHHHHHHHHhc
Confidence 45689999999999999988753
No 37
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=68.82 E-value=22 Score=40.55 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=29.4
Q ss_pred cceeEEEeCCCC-CChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780 185 SHFTVLVRAVPW-SAEQSYSESVKEFFMKYYAPSYLSHHMVHRS 227 (701)
Q Consensus 185 s~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~ 227 (701)
...+|+|.|+|. ... .+.|++.|+++ |.|.++.+.++-
T Consensus 274 ~~~~l~v~nL~~~~vt---~~~L~~lF~~y--G~V~~vki~~~~ 312 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVN---CDRLFNLFCVY--GNVERVKFMKNK 312 (481)
T ss_pred CCCEEEEeCCCCCCCC---HHHHHHHHHhc--CCeEEEEEEeCC
Confidence 456999999997 444 37899999987 577888887763
No 38
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=66.46 E-value=5.5 Score=31.31 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=22.4
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
++..+.|||+|++..+|..|.+.++..
T Consensus 36 ~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 36 GKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred ccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 345689999999999999999876654
No 39
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=64.40 E-value=47 Score=37.05 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.5
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHh
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEIL 315 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~ 315 (701)
.++++-|||.|.|+.+|+.|.|-.
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~rh 165 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALGRH 165 (510)
T ss_pred CCcccceEEEecCHHHHHHHHHHH
Confidence 568999999999999999999853
No 40
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=63.87 E-value=6.5 Score=31.31 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.9
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhc
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILH 316 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~ 316 (701)
+..+.|||+|.|..+|..|.+..+
T Consensus 37 ~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 37 QSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCEEEEEeCCHHHHHHHHHHCC
Confidence 456899999999999999998764
No 41
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=63.41 E-value=11 Score=29.64 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=25.3
Q ss_pred EEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 189 VLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 189 VlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
|.|.|||.+..+ +.|+++|+++ |.+..+.+..+
T Consensus 1 l~v~nlp~~~t~---~~l~~~f~~~--g~i~~~~~~~~ 33 (70)
T PF00076_consen 1 LYVGNLPPDVTE---EELRDFFSQF--GKIESIKVMRN 33 (70)
T ss_dssp EEEESETTTSSH---HHHHHHHHTT--STEEEEEEEEE
T ss_pred cEEcCCCCcCCH---HHHHHHHHHh--hhccccccccc
Confidence 689999998764 7899999985 45566666654
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=63.26 E-value=14 Score=37.82 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=27.4
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
..||+.|-|+..+..+ +.|...|... +.|.+..+++|
T Consensus 5 ~prtlyvgnld~~vte---~~i~~lf~qi--g~v~~~k~i~~ 41 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTE---DFIATLFNQI--GSVTKTKVIFD 41 (321)
T ss_pred CCceEEeeccChhhHH---HHHHHHHHhc--cccccceeehh
Confidence 3489999999886554 6677788876 46677777766
No 43
>smart00362 RRM_2 RNA recognition motif.
Probab=58.85 E-value=16 Score=28.14 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.0
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhcc
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHS 317 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~ 317 (701)
+..+.|||+|++..+|+.|.+.++.
T Consensus 37 ~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 37 KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 4568999999999999999887654
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=58.32 E-value=24 Score=36.65 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=33.6
Q ss_pred EEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhH--HHHHHHHHHHHHHh
Q 039780 189 VLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRV--QRLMNDAEKICRVF 244 (701)
Q Consensus 189 VlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L--~~L~~~~e~~~~~l 244 (701)
+.|-|+|.+..+ ..|+..|+.+ ++|++.-|+.|.+=+ ++ ....+.+.++|
T Consensus 5 LFIGNLp~~~~~---~elr~lFe~y--gkVlECDIvKNYgFVHiEd-ktaaedairNL 56 (346)
T KOG0109|consen 5 LFIGNLPREATE---QELRSLFEQY--GKVLECDIVKNYGFVHIED-KTAAEDAIRNL 56 (346)
T ss_pred hhccCCCcccch---HHHHHHHHhh--CceEeeeeecccceEEeec-ccccHHHHhhc
Confidence 568899987653 6788999987 588888888776432 22 12235566666
No 45
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=58.00 E-value=14 Score=29.28 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=24.4
Q ss_pred EEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 189 VLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 189 VlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
|+|+|||.+..+ +.|.++|+.+ +.+.++.+.++
T Consensus 1 v~i~nlp~~~~~---~~l~~~f~~~--g~v~~v~~~~~ 33 (70)
T PF14259_consen 1 VYISNLPPSTTE---EDLRNFFSRF--GPVEKVRLIKN 33 (70)
T ss_dssp EEEESSTTT--H---HHHHHHCTTS--SBEEEEEEEES
T ss_pred CEEeCCCCCCCH---HHHHHHHHhc--CCcceEEEEee
Confidence 689999998654 7799999986 35777777765
No 46
>smart00360 RRM RNA recognition motif.
Probab=57.18 E-value=13 Score=28.40 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=21.2
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhc
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILH 316 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~ 316 (701)
.+..+.|||+|++..+|..|.+.++
T Consensus 35 ~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 35 GKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHcC
Confidence 3457899999999999999988665
No 47
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=56.78 E-value=11 Score=36.16 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=30.8
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
..+-+.|||+|++..+|..|...|...+ ...+.|++.
T Consensus 44 rnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 44 RNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred ecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 3577999999999999999999988877 455777763
No 48
>smart00362 RRM_2 RNA recognition motif.
Probab=56.38 E-value=16 Score=28.02 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=24.1
Q ss_pred eEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 188 TVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 188 TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
||.|+|+|.+..+ +.|+++|+++. .+..+.+.++
T Consensus 1 ~v~i~~l~~~~~~---~~l~~~~~~~g--~v~~~~~~~~ 34 (72)
T smart00362 1 TLFVGNLPPDVTE---EDLKELFSKFG--PIESVKIPKD 34 (72)
T ss_pred CEEEcCCCCcCCH---HHHHHHHHhcC--CEEEEEEecC
Confidence 6899999997653 67888998764 4555555544
No 49
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=52.81 E-value=44 Score=37.39 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=27.7
Q ss_pred eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
++|.|.|||-+..+ +.|.++|.+. +.|.++.+++|
T Consensus 19 ~~v~vgnip~~~se---~~l~~~~~~~--g~v~s~~~v~D 53 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSE---EQLLSIFSGV--GPVLSFRLVYD 53 (435)
T ss_pred cceEecCCCCcccH---HHHHHHHhcc--Cccceeeeccc
Confidence 89999999998654 7888888875 46777777665
No 50
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=49.89 E-value=21 Score=27.53 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=21.9
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
++.+.|||+|++..+|+.|.+.++..
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999999999999999876554
No 51
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=47.03 E-value=31 Score=26.59 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=24.7
Q ss_pred eEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 188 TVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 188 TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
+|.|+|+|....+ +.++++|+.+ +.+.++.+.++
T Consensus 1 ~i~i~~l~~~~~~---~~i~~~~~~~--g~i~~~~~~~~ 34 (74)
T cd00590 1 TLFVGNLPPDVTE---EDLRELFSKF--GKVESVRIVRD 34 (74)
T ss_pred CEEEeCCCCccCH---HHHHHHHHhc--CCEEEEEEeeC
Confidence 5889999997653 6788899886 45566666554
No 52
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=45.62 E-value=1.1e+02 Score=32.48 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhheEEeccCc--CCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Q 039780 531 PLILPFLLIYFVLAYLVYKNQIINVYKKSY--ESGGQYWPIAHKTIIASLVLTQIIALGIFG 590 (701)
Q Consensus 531 Plil~f~~~yF~l~y~v~Ky~llyvy~~~~--esgG~~~~~~~~~~~~~l~~~qi~~~g~f~ 590 (701)
|..+++|+++.++.+.+||+-+.-+-.... .-.+..+|++.--++.|+++++...+-+|.
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvliaivIs~pl~l~iF~ 107 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIAIVISEPLELKIFE 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999885432211 001245666666777777777777766663
No 53
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=43.16 E-value=78 Score=33.17 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=47.8
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP 265 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~ 265 (701)
..|++|.-|+-++.+ ..|++.|+.|. .+.++.+|+|.
T Consensus 101 y~TLFv~RLnydT~E---skLrreF~~YG--~IkrirlV~d~-------------------------------------- 137 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSE---SKLRREFEKYG--PIKRIRLVRDK-------------------------------------- 137 (335)
T ss_pred cceeeeeeccccccH---HHHHHHHHhcC--cceeEEEeeec--------------------------------------
Confidence 469999999987654 67889998874 45566666540
Q ss_pred hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhc
Q 039780 266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILH 316 (701)
Q Consensus 266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~ 316 (701)
+ ..++.|+|||.|+...+-++|..-..
T Consensus 138 ------v------------------TgkskGYAFIeye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 138 ------V------------------TGKSKGYAFIEYEHERDMKAAYKDAD 164 (335)
T ss_pred ------c------------------cCCccceEEEEeccHHHHHHHHHhcc
Confidence 0 15678999999999999998876544
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=41.84 E-value=31 Score=34.49 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHhcc
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHS 317 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~ 317 (701)
..+.|||||.|.+.|..|...+..
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcC
Confidence 348999999999999999888764
No 55
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=41.51 E-value=6 Score=33.84 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=20.4
Q ss_pred CCcceeEEEeCCCCCCh-hhhHHHHHHHHhh
Q 039780 183 NPSHFTVLVRAVPWSAE-QSYSESVKEFFMK 212 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~-~~~~~~l~~~F~~ 212 (701)
..|.+||+|+|||...+ +.+.+.|+=+|++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~LeIhFqK 79 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLEIHFQK 79 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEEEEEec
Confidence 46789999999999544 3344555555654
No 56
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=38.19 E-value=2.3e+02 Score=29.50 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=30.5
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchh
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSR 229 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~ 229 (701)
+++-|.|-++.++.+. |.|++-|..+ |+|.+..|++|...
T Consensus 61 ~hfhvfvgdls~eI~~---e~lr~aF~pF--GevS~akvirD~~T 100 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDN---EKLREAFAPF--GEVSDAKVIRDMNT 100 (321)
T ss_pred cceeEEehhcchhcch---HHHHHHhccc--cccccceEeecccC
Confidence 3678999999887653 6788888765 57788889998643
No 57
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=37.67 E-value=1e+02 Score=36.47 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=31.6
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCCCC--ceEEeeC--CCCCC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSENPM--LWVTEMA--PEPND 333 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~p~--~~~v~~A--P~P~D 333 (701)
..+.++|||+...+.+|+.|.|.+...+-. ..++.+| +.|++
T Consensus 454 i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 454 IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 567899999999999999999998865543 3334444 56666
No 58
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.46 E-value=31 Score=31.42 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCC
Q 039780 12 INSAIAVLLFLLYSVLRKQPG 32 (701)
Q Consensus 12 in~~i~~~~~llF~~LR~~~~ 32 (701)
+..+++++++++|++.|+|.+
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 445566778888888887643
No 59
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.01 E-value=50 Score=39.35 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhcCCcchhhhHhhhcchhhhhhhhHHH
Q 039780 377 LPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVF 425 (701)
Q Consensus 377 lP~l~l~~l~~llP~i~~~ls~~eg~~t~S~~e~s~~~k~f~F~~vnvf 425 (701)
+-.+++.+++.+---+..+++..|.+.|.|+.|.|+.-|.|.||++|..
T Consensus 439 in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~y 487 (861)
T KOG2514|consen 439 INLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYY 487 (861)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhc
Confidence 3334444555555556778889999999999999999999999999974
No 60
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.32 E-value=70 Score=26.03 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=28.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCCCCceEEeeCCCCCCe
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDV 334 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~~p~~~~v~~AP~P~DI 334 (701)
....|||.|..+|-.|-+.+...+- .++..|-|++|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi---~~~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI---PVRLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC---cEEEeCCChhc
Confidence 4678999999999998887766543 44567888877
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=32.86 E-value=90 Score=34.24 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred EEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHH------HHHHHHHHHh-------------ccccc
Q 039780 189 VLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLM------NDAEKICRVF-------------KGVSA 249 (701)
Q Consensus 189 VlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~------~~~e~~~~~l-------------k~~~~ 249 (701)
|.|.|+|++.++ +.|.+.|..+ |.++++.++.|.+...--. +..++++.++ ...+.
T Consensus 79 ~~i~nl~~~~~~---~~~~d~f~~~--g~ilS~kv~~~~~g~kg~FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDN---KSLYDTFSEF--GNILSCKVATDENGSKGYFVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCc---HHHHHHHHhh--cCeeEEEEEEcCCCceeeEEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Q ss_pred CCCCCCCCCCCccCcchhhhhhhcCccchhhhhhhhhhhhhh------------------ccCCceEEEEeCCHHHHHHH
Q 039780 250 EQKSKPCLLPCFCGAPNSFEILSNEPDNVRGNIGLDISNLAT------------------EKENAVAFVCFKTRYAAVVA 311 (701)
Q Consensus 250 ~~~~rp~~~~~~~~~~~~y~~~~~~~~~l~~~i~~~~~~~~~------------------~~~~~~aFVtF~s~~~A~~a 311 (701)
..+.+|.+ + +.++.+.....+...+..+.+... .+..+.+||.|.+..+|..|
T Consensus 154 ~er~~~~~--------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~a 224 (369)
T KOG0123|consen 154 EEREAPLG--------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKA 224 (369)
T ss_pred hhhccccc--------c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHH
Q ss_pred HHHhccC
Q 039780 312 AEILHSE 318 (701)
Q Consensus 312 ~q~~~~~ 318 (701)
.+.+...
T Consensus 225 v~~l~~~ 231 (369)
T KOG0123|consen 225 VETLNGK 231 (369)
T ss_pred HHhccCC
No 62
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=31.66 E-value=47 Score=32.89 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.6
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhcc
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHS 317 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~ 317 (701)
++.-|+|||.|.|..-|.+|+.+..+
T Consensus 89 GNSKgYAFVEFEs~eVA~IaAETMNN 114 (214)
T KOG4208|consen 89 GNSKGYAFVEFESEEVAKIAAETMNN 114 (214)
T ss_pred CCcCceEEEEeccHHHHHHHHHHhhh
Confidence 56779999999999999999987554
No 63
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=31.19 E-value=61 Score=35.24 Aligned_cols=37 Identities=14% Similarity=0.359 Sum_probs=29.0
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
...+|.|.|||.+..+ +.|+++|+++ +.+.++.+.+|
T Consensus 192 ~~~~lfV~nLp~~vte---e~L~~~F~~f--G~V~~v~i~~d 228 (346)
T TIGR01659 192 KDTNLYVTNLPRTITD---DQLDTIFGKY--GQIVQKNILRD 228 (346)
T ss_pred ccceeEEeCCCCcccH---HHHHHHHHhc--CCEEEEEEeec
Confidence 4578999999998764 7799999887 46677777665
No 64
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=31.04 E-value=92 Score=26.51 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=24.7
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeCCCCCCe
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMAPEPNDV 334 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~AP~P~DI 334 (701)
..++|.|-|.++..|..|..-+..... .+..|+..|.++|.
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNREF 80 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S---
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcccc
Confidence 358999999999999999887665543 45677778877664
No 65
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=24.93 E-value=3.9e+02 Score=27.13 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhe---EEeccCcCCCCccHHHHH--HHHHHHHHHHHHHHHHH
Q 039780 514 PRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQII---NVYKKSYESGGQYWPIAH--KTIIASLVLTQIIALGI 588 (701)
Q Consensus 514 ~~~l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~ll---yvy~~~~esgG~~~~~~~--~~~~~~l~~~qi~~~g~ 588 (701)
+...+++.+.+-|+.++-+...-......+....-|...+ ....|+.+.-|..+..-. +++..++++.=+..+.+
T Consensus 104 Gv~al~~~lllk~~~l~~l~~~~~~~~l~i~~~~~r~~~~~~~~~~~p~~~Glg~~f~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T PF02654_consen 104 GVLALVLVLLLKYAALSSLPSHGLALALLIAPVLARLSMLLLAAFSKPRPEGLGALFVGSAKKRQVLIALIILLLLALFL 183 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhHHhccCChhHHHHHHHHHHHHHHHH
Confidence 4445555555555555544432223333444455565443 233455566666554322 34444444432222222
Q ss_pred HhccccccceehhHHHHHHHHHHHHHHHhhcCch
Q 039780 589 FGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPS 622 (701)
Q Consensus 589 f~lk~~~~~~~~~~~l~i~ti~f~~~~~~~~~~~ 622 (701)
.... +......+.-.+.+.++..++++++.-.
T Consensus 184 ~~~~--~~~~~~~~~~~~~~~~~~~~~~r~lGG~ 215 (235)
T PF02654_consen 184 GGIP--WIGLLALLVALLLALLLARYARRRLGGI 215 (235)
T ss_pred hhhH--HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 2111 2222233444567777888898887654
No 66
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.48 E-value=6.1e+02 Score=25.11 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q 039780 600 FTIPLIVGTLLFNEYCRQRFF 620 (701)
Q Consensus 600 ~~~~l~i~ti~f~~~~~~~~~ 620 (701)
..+.+-++++...+|.+++|.
T Consensus 182 ~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 182 VYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344455667777888888873
No 67
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=22.23 E-value=1.1e+02 Score=30.50 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=27.6
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
.+||.|.|||.+..+ +.|.++|.++. .+.++.+.+|
T Consensus 115 ~~~l~v~nL~~~~~~---~~l~~~F~~~g--~~~~~~~~~d 150 (306)
T COG0724 115 NNTLFVGNLPYDVTE---EDLRELFKKFG--PVKRVRLVRD 150 (306)
T ss_pred CceEEEeCCCCCCCH---HHHHHHHHhcC--ceeEEEeeec
Confidence 489999999987764 78999999875 4556666554
No 68
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=22.10 E-value=82 Score=32.38 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=29.5
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCCC-----CceEEeeC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSENP-----MLWVTEMA 328 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~p-----~~~~v~~A 328 (701)
....|+|||-|++..+||.|...+++++- ..+.|..|
T Consensus 57 g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 57 GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA 98 (371)
T ss_pred CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec
Confidence 44679999999999999999999998753 24556655
No 69
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=21.74 E-value=96 Score=27.07 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=17.9
Q ss_pred eeEEEeCCCCCChhhhHHHHHHHHhhhCCCC
Q 039780 187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPS 217 (701)
Q Consensus 187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~ 217 (701)
-|||++|||....+ +.|.+.+++...++
T Consensus 2 TTvMirNIPn~~t~---~~L~~~l~~~~~g~ 29 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQ---EMLIQILDEHFKGK 29 (97)
T ss_pred eeEEEecCCCCCCH---HHHHHHHHHhccCc
Confidence 48999999998764 44444444444343
No 70
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=21.33 E-value=1e+02 Score=27.22 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN 319 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~ 319 (701)
..|+|||.+++..+|..|+.-+...+
T Consensus 56 TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 56 TRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred cCceEEEEehHhhhHHHHHHHhcccc
Confidence 46999999999999999998665544
No 71
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=20.91 E-value=1.1e+02 Score=32.71 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=23.9
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
..+-|.|=|+|++...|..|+|+++..
T Consensus 311 ~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 311 RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 467899999999999999999998754
No 72
>PF15159 PIG-Y: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Probab=20.40 E-value=83 Score=25.88 Aligned_cols=26 Identities=19% Similarity=0.600 Sum_probs=23.1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHh
Q 039780 525 ICSVMAPLILPFLLIYFVLAYLVYKN 550 (701)
Q Consensus 525 ~Ys~i~Plil~f~~~yF~l~y~v~Ky 550 (701)
-|+.+.|+.+|..+++-...|+..|+
T Consensus 43 yY~lLvPl~iPv~~~~vy~nWls~k~ 68 (72)
T PF15159_consen 43 YYCLLVPLTIPVTIVFVYFNWLSWKF 68 (72)
T ss_pred ceeeehhhhhhHHHHHHHHHHHhHHH
Confidence 47889999999999999999998886
No 73
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=20.12 E-value=1.7e+02 Score=33.35 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhcc
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHS 317 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~ 317 (701)
...-||||++..+||.|...++.
T Consensus 212 N~nWyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 212 NDNWYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred cCceEEEeecchhHHHHHHHHHH
Confidence 46789999999999999876654
Done!