Query 039780
Match_columns 701
No_of_seqs 289 out of 944
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 22:52:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lkz_A RNA-binding protein 5; 96.8 0.0044 1.5E-07 52.7 8.2 80 184-328 7-92 (95)
2 2dnz_A Probable RNA-binding pr 96.7 0.013 4.6E-07 49.1 11.1 82 184-332 3-86 (95)
3 4fxv_A ELAV-like protein 1; RN 96.6 0.008 2.7E-07 51.4 8.8 77 185-328 18-96 (99)
4 2jrs_A RNA-binding protein 39; 96.6 0.014 4.7E-07 50.7 10.2 84 183-333 23-108 (108)
5 3s8s_A Histone-lysine N-methyl 96.5 0.012 3.9E-07 51.5 9.1 80 184-330 4-85 (110)
6 1x5s_A Cold-inducible RNA-bind 96.3 0.024 8.2E-07 48.2 10.3 79 183-328 9-89 (102)
7 3p5t_L Cleavage and polyadenyl 96.3 0.0092 3.1E-07 49.8 7.4 80 187-331 2-83 (90)
8 3bs9_A Nucleolysin TIA-1 isofo 96.3 0.015 5.3E-07 47.7 8.7 78 184-328 4-83 (87)
9 2lxi_A RNA-binding protein 10; 96.3 0.0075 2.6E-07 50.6 6.8 36 293-328 42-80 (91)
10 2dgp_A Bruno-like 4, RNA bindi 96.3 0.031 1.1E-06 47.9 10.9 80 183-329 10-94 (106)
11 2dgs_A DAZ-associated protein 96.2 0.038 1.3E-06 46.7 10.9 81 183-331 7-89 (99)
12 1whw_A Hypothetical protein ri 96.2 0.03 1E-06 47.3 10.3 81 184-331 6-88 (99)
13 3mdf_A Peptidyl-prolyl CIS-tra 96.2 0.02 6.9E-07 46.8 8.8 68 184-318 5-72 (85)
14 1x5t_A Splicing factor 3B subu 96.2 0.026 8.8E-07 47.4 9.4 37 293-329 46-84 (96)
15 4a8x_A RNA-binding protein wit 96.1 0.02 6.8E-07 47.2 8.4 36 294-329 46-83 (88)
16 2cpz_A CUG triplet repeat RNA- 96.1 0.029 1E-06 48.9 9.9 79 184-329 23-103 (115)
17 3nmr_A Cugbp ELAV-like family 96.1 0.011 3.9E-07 55.1 7.7 37 185-226 2-38 (175)
18 1x5u_A Splicing factor 3B subu 96.1 0.035 1.2E-06 47.5 10.1 80 183-329 12-93 (105)
19 2e5h_A Zinc finger CCHC-type a 96.1 0.022 7.5E-07 47.6 8.5 79 183-328 13-93 (94)
20 2x1f_A MRNA 3'-END-processing 96.0 0.029 9.8E-07 47.2 9.2 38 293-330 42-81 (96)
21 2dgv_A HnRNP M, heterogeneous 96.0 0.038 1.3E-06 45.9 9.7 79 183-330 5-85 (92)
22 3md1_A Nuclear and cytoplasmic 96.0 0.036 1.2E-06 45.0 9.2 76 187-329 2-79 (83)
23 2dgo_A Cytotoxic granule-assoc 96.0 0.048 1.6E-06 47.5 10.6 79 183-328 12-92 (115)
24 2do4_A Squamous cell carcinoma 95.9 0.041 1.4E-06 46.6 9.8 78 184-329 15-94 (100)
25 2div_A TRNA selenocysteine ass 95.9 0.045 1.5E-06 46.2 9.8 69 183-318 6-75 (99)
26 1p27_B RNA-binding protein 8A; 95.9 0.047 1.6E-06 46.7 10.0 78 184-328 21-100 (106)
27 2fy1_A RNA-binding motif prote 95.9 0.062 2.1E-06 47.1 11.0 77 185-329 6-84 (116)
28 2cq3_A RNA-binding protein 9; 95.9 0.075 2.6E-06 45.2 11.3 78 183-329 12-91 (103)
29 2cqc_A Arginine/serine-rich sp 95.9 0.032 1.1E-06 46.7 8.7 78 184-328 13-92 (95)
30 2dnh_A Bruno-like 5, RNA bindi 95.8 0.061 2.1E-06 45.9 10.6 78 184-329 13-95 (105)
31 1b7f_A Protein (SXL-lethal pro 95.8 0.018 6.1E-07 53.5 7.7 37 185-226 2-38 (168)
32 4f25_A Polyadenylate-binding p 95.8 0.037 1.3E-06 48.4 9.1 75 185-328 4-80 (115)
33 2cqi_A Nucleolysin TIAR; RNA r 95.8 0.073 2.5E-06 45.3 10.8 78 184-330 13-92 (103)
34 2dnm_A SRP46 splicing factor; 95.8 0.043 1.5E-06 46.7 9.2 78 184-328 11-90 (103)
35 2cq0_A Eukaryotic translation 95.8 0.041 1.4E-06 46.9 9.0 80 183-329 12-93 (103)
36 2a3j_A U1 small nuclear ribonu 95.7 0.065 2.2E-06 48.0 10.4 44 294-337 71-116 (127)
37 2ywk_A Putative RNA-binding pr 95.7 0.046 1.6E-06 45.7 8.9 78 183-328 13-92 (95)
38 2cqd_A RNA-binding region cont 95.7 0.041 1.4E-06 48.0 8.9 79 183-328 14-93 (116)
39 2dhg_A TRNA selenocysteine ass 95.7 0.058 2E-06 46.0 9.7 78 184-328 7-87 (104)
40 2cqg_A TDP-43, TAR DNA-binding 95.7 0.042 1.5E-06 46.8 8.8 80 184-330 13-92 (103)
41 1wi8_A EIF-4B, eukaryotic tran 95.7 0.054 1.8E-06 46.3 9.4 81 183-331 12-94 (104)
42 2la6_A RNA-binding protein FUS 95.7 0.067 2.3E-06 45.2 9.9 36 293-328 61-98 (99)
43 1oo0_B CG8781-PA, drosophila Y 95.6 0.056 1.9E-06 46.6 9.5 78 184-328 24-103 (110)
44 3ucg_A Polyadenylate-binding p 95.6 0.048 1.6E-06 44.9 8.6 76 185-328 5-82 (89)
45 1p1t_A Cleavage stimulation fa 95.6 0.03 1E-06 47.7 7.5 81 184-331 6-88 (104)
46 2cqb_A Peptidyl-prolyl CIS-tra 95.6 0.039 1.3E-06 46.9 8.2 80 183-329 9-90 (102)
47 1h2v_Z 20 kDa nuclear CAP bind 95.6 0.057 2E-06 49.9 10.0 80 184-330 37-118 (156)
48 1x4h_A RNA-binding protein 28; 95.6 0.07 2.4E-06 46.0 9.9 79 184-329 13-99 (111)
49 2cph_A RNA binding motif prote 95.5 0.085 2.9E-06 45.1 10.2 82 183-330 12-96 (107)
50 2dng_A Eukaryotic translation 95.5 0.064 2.2E-06 45.7 9.2 78 183-329 12-91 (103)
51 3ex7_B RNA-binding protein 8A; 95.5 0.071 2.4E-06 47.2 9.8 79 183-328 19-99 (126)
52 3s7r_A Heterogeneous nuclear r 95.5 0.043 1.5E-06 45.1 7.8 38 183-225 8-45 (87)
53 2err_A Ataxin-2-binding protei 95.4 0.067 2.3E-06 46.3 9.3 77 183-328 26-104 (109)
54 3ns6_A Eukaryotic translation 95.4 0.034 1.2E-06 47.4 7.3 36 293-328 52-90 (100)
55 3ulh_A THO complex subunit 4; 95.4 0.066 2.3E-06 45.8 9.2 79 182-328 25-105 (107)
56 3md3_A Nuclear and cytoplasmic 95.4 0.02 6.8E-07 52.9 6.2 36 187-227 1-36 (166)
57 1x4a_A Splicing factor, argini 95.4 0.11 3.7E-06 44.7 10.5 35 294-328 60-96 (109)
58 2cqp_A RNA-binding protein 12; 95.4 0.046 1.6E-06 46.0 8.0 40 293-332 55-96 (98)
59 2d9p_A Polyadenylate-binding p 95.4 0.074 2.5E-06 45.2 9.2 78 183-329 12-91 (103)
60 1fxl_A Paraneoplastic encephal 95.3 0.058 2E-06 49.6 9.2 38 185-227 1-38 (167)
61 2khc_A Testis-specific RNP-typ 95.3 0.046 1.6E-06 47.8 8.0 68 184-318 38-105 (118)
62 2kt5_A RNA and export factor-b 95.3 0.12 4.1E-06 45.6 10.8 78 184-329 33-112 (124)
63 2cpj_A Non-POU domain-containi 95.3 0.11 3.8E-06 43.8 10.1 37 295-331 51-89 (99)
64 2dgw_A Probable RNA-binding pr 95.3 0.079 2.7E-06 43.9 9.0 76 183-328 7-84 (91)
65 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.3 0.063 2.1E-06 48.3 9.0 68 184-318 61-128 (140)
66 3lqv_A PRE-mRNA branch site pr 95.2 0.11 3.9E-06 45.0 10.2 76 184-329 6-83 (115)
67 2cpf_A RNA binding motif prote 95.2 0.07 2.4E-06 44.9 8.5 81 184-328 3-85 (98)
68 2cpe_A RNA-binding protein EWS 95.2 0.11 3.8E-06 44.9 9.9 37 292-328 62-100 (113)
69 1s79_A Lupus LA protein; RRM, 95.2 0.06 2E-06 46.2 7.9 37 183-224 8-44 (103)
70 1wg1_A KIAA1579 protein, homol 95.1 0.046 1.6E-06 45.2 7.0 38 295-332 40-79 (88)
71 2dgx_A KIAA0430 protein; RRM d 95.1 0.15 5.2E-06 42.8 10.2 33 296-328 53-87 (96)
72 2kxn_B Transformer-2 protein h 95.1 0.092 3.1E-06 47.0 9.2 78 184-328 44-123 (129)
73 1uaw_A Mouse-musashi-1; RNP-ty 95.0 0.068 2.3E-06 42.6 7.5 24 293-316 40-63 (77)
74 4f02_A Polyadenylate-binding p 95.0 0.012 4E-07 57.7 3.3 37 186-227 15-51 (213)
75 2dnq_A RNA-binding protein 4B; 95.0 0.21 7.3E-06 41.1 10.7 34 296-329 43-78 (90)
76 1x4e_A RNA binding motif, sing 94.9 0.074 2.5E-06 43.4 7.5 67 185-318 4-70 (85)
77 3r27_A HnRNP L, heterogeneous 94.9 0.15 5.1E-06 43.6 9.5 33 296-328 58-94 (100)
78 2do0_A HnRNP M, heterogeneous 94.9 0.14 4.8E-06 44.3 9.7 77 184-328 13-91 (114)
79 2ek1_A RNA-binding protein 12; 94.8 0.056 1.9E-06 45.2 6.7 36 293-328 55-92 (95)
80 2ki2_A SS-DNA binding protein 94.8 0.045 1.5E-06 45.3 5.9 37 293-330 41-79 (90)
81 2cpd_A Apobec-1 stimulating pr 94.8 0.22 7.4E-06 41.9 10.4 33 296-328 52-86 (99)
82 1x5o_A RNA binding motif, sing 94.7 0.17 5.8E-06 43.8 9.9 67 184-318 23-89 (114)
83 1u6f_A Tcubp1, RNA-binding pro 94.7 0.15 5.2E-06 45.9 9.8 77 185-328 41-119 (139)
84 2e44_A Insulin-like growth fac 94.7 0.21 7.1E-06 41.7 9.9 34 298-331 57-92 (96)
85 2rs2_A Musashi-1, RNA-binding 94.6 0.093 3.2E-06 45.4 7.6 78 184-328 23-101 (109)
86 2fc8_A NCL protein; structure 94.6 0.14 4.7E-06 43.4 8.6 37 294-330 53-91 (102)
87 1whx_A Hypothetical protein ri 94.5 0.11 3.9E-06 45.0 8.2 35 296-330 47-83 (111)
88 1wex_A Hypothetical protein (r 94.5 0.25 8.6E-06 42.4 10.2 34 296-329 52-89 (104)
89 3n9u_C Cleavage and polyadenyl 94.5 0.13 4.5E-06 47.7 9.0 79 185-328 54-134 (156)
90 2mss_A Protein (musashi1); RNA 94.5 0.09 3.1E-06 41.7 6.9 21 293-313 39-59 (75)
91 2f3j_A RNA and export factor b 94.4 0.15 5E-06 48.4 9.4 83 184-334 86-170 (177)
92 1why_A Hypothetical protein ri 94.4 0.28 9.4E-06 41.1 10.2 34 295-328 53-90 (97)
93 2dnp_A RNA-binding protein 14; 94.4 0.29 9.8E-06 40.3 10.1 33 297-329 45-79 (90)
94 1nu4_A U1A RNA binding domain; 94.4 0.11 3.8E-06 43.4 7.6 40 295-334 51-92 (97)
95 1x4c_A Splicing factor, argini 94.4 0.21 7.1E-06 42.9 9.4 33 296-328 51-90 (108)
96 2lea_A Serine/arginine-rich sp 94.4 0.11 3.8E-06 46.8 8.0 77 185-328 46-124 (135)
97 1iqt_A AUF1, heterogeneous nuc 94.3 0.068 2.3E-06 42.4 5.8 22 293-314 39-60 (75)
98 2dh8_A DAZ-associated protein 94.3 0.094 3.2E-06 44.7 7.0 37 183-224 13-49 (105)
99 2dis_A Unnamed protein product 94.3 0.21 7.2E-06 42.7 9.3 36 293-328 50-89 (109)
100 1rk8_A CG8781-PA, CG8781-PA pr 94.2 0.21 7E-06 46.6 9.8 78 184-328 70-149 (165)
101 2kn4_A Immunoglobulin G-bindin 94.1 0.2 6.9E-06 46.1 9.5 78 184-328 68-147 (158)
102 2dnn_A RNA-binding protein 12; 94.1 0.11 3.7E-06 45.2 7.0 33 185-223 15-47 (109)
103 1x4g_A Nucleolysin TIAR; struc 94.1 0.35 1.2E-05 41.4 10.3 35 295-329 61-97 (109)
104 2nlw_A Eukaryotic translation 94.0 0.31 1E-05 41.6 9.7 38 293-330 59-99 (105)
105 2dgu_A Heterogeneous nuclear r 93.9 0.34 1.1E-05 41.1 9.8 35 296-330 46-82 (103)
106 1x4f_A Matrin 3; structural ge 93.9 0.2 6.9E-06 43.7 8.4 40 296-335 63-106 (112)
107 2j76_E EIF-4B, EIF4B, eukaryot 93.9 0.11 3.9E-06 43.9 6.7 78 184-329 17-96 (100)
108 2cpy_A RNA-binding protein 12; 93.9 0.12 4.1E-06 45.0 7.0 35 184-223 13-48 (114)
109 1x4b_A Heterogeneous nuclear r 93.9 0.2 6.7E-06 43.6 8.4 75 186-328 27-103 (116)
110 2jwn_A Embryonic polyadenylate 93.9 0.15 5.2E-06 44.8 7.8 76 186-329 36-113 (124)
111 2hgl_A HNRPF protein, heteroge 93.8 0.14 4.9E-06 46.3 7.6 78 184-328 42-122 (136)
112 1wg5_A Heterogeneous nuclear r 93.8 0.18 6.3E-06 43.0 7.9 43 293-337 55-99 (104)
113 2cq4_A RNA binding motif prote 93.8 0.1 3.5E-06 45.3 6.3 33 186-223 25-57 (114)
114 2e5j_A Methenyltetrahydrofolat 93.8 0.69 2.4E-05 38.6 11.4 38 294-331 55-94 (97)
115 2kvi_A Nuclear polyadenylated 93.7 0.28 9.6E-06 41.0 8.8 33 296-328 46-80 (96)
116 2la4_A Nuclear and cytoplasmic 93.6 0.29 9.9E-06 41.2 8.8 28 183-213 24-51 (101)
117 2jvr_A Nucleolar protein 3; RN 93.6 0.26 8.8E-06 42.9 8.5 36 294-329 66-103 (111)
118 2m2b_A RNA-binding protein 10; 93.5 0.16 5.6E-06 45.3 7.4 25 293-318 65-89 (131)
119 2hvz_A Splicing factor, argini 93.5 0.47 1.6E-05 39.9 9.9 35 294-328 36-72 (101)
120 2jvo_A Nucleolar protein 3; nu 93.5 0.37 1.3E-05 41.4 9.4 34 295-328 65-100 (108)
121 2cq1_A PTB-like protein L; RRM 93.5 0.34 1.2E-05 41.3 8.9 35 295-329 51-89 (101)
122 2cpi_A CCR4-NOT transcription 93.4 0.16 5.4E-06 44.0 6.8 36 293-328 61-98 (111)
123 2lmi_A GRSF-1, G-rich sequence 93.2 0.22 7.4E-06 42.8 7.4 28 183-213 8-35 (107)
124 1x4d_A Matrin 3; structural ge 93.2 0.4 1.4E-05 41.0 9.0 35 296-330 53-91 (102)
125 2diu_A KIAA0430 protein; struc 93.1 0.13 4.4E-06 43.4 5.3 41 296-336 47-89 (96)
126 2xnq_A Nuclear polyadenylated 93.0 0.66 2.3E-05 38.9 10.0 34 295-328 57-92 (97)
127 2hgm_A HNRPF protein, heteroge 92.9 0.18 6.1E-06 45.0 6.5 27 184-213 40-66 (126)
128 2i2y_A Fusion protein consists 92.9 0.7 2.4E-05 42.0 10.8 75 184-330 71-147 (150)
129 2qfj_A FBP-interacting repress 92.8 0.42 1.4E-05 46.0 9.6 77 185-328 124-202 (216)
130 2adc_A Polypyrimidine tract-bi 92.7 0.28 9.5E-06 48.3 8.4 39 184-227 32-71 (229)
131 3beg_B Splicing factor, argini 92.6 0.38 1.3E-05 41.8 8.2 23 296-318 52-74 (115)
132 2cjk_A Nuclear polyadenylated 92.5 0.2 6.7E-06 46.2 6.5 33 186-223 3-35 (167)
133 1fje_B Nucleolin RBD12, protei 92.4 0.1 3.5E-06 48.7 4.4 37 292-328 133-171 (175)
134 1l3k_A Heterogeneous nuclear r 92.3 0.35 1.2E-05 45.7 8.1 37 183-224 10-46 (196)
135 1qm9_A Polypyrimidine tract-bi 92.2 0.27 9.2E-06 46.9 7.3 38 185-227 2-40 (198)
136 3q2s_C Cleavage and polyadenyl 91.9 0.35 1.2E-05 47.8 7.9 79 185-328 67-147 (229)
137 2e5g_A U6 snRNA-specific termi 91.9 0.84 2.9E-05 37.8 9.2 33 297-330 47-81 (94)
138 2g4b_A Splicing factor U2AF 65 91.9 0.46 1.6E-05 43.8 8.3 78 184-328 92-171 (172)
139 2qfj_A FBP-interacting repress 91.7 0.42 1.4E-05 45.9 8.2 77 185-328 27-105 (216)
140 1wel_A RNA-binding protein 12; 91.7 0.22 7.5E-06 43.9 5.6 35 293-328 65-101 (124)
141 3sde_A Paraspeckle component 1 91.6 0.92 3.1E-05 45.4 10.8 49 295-343 58-108 (261)
142 2cjk_A Nuclear polyadenylated 91.5 0.47 1.6E-05 43.5 7.9 35 293-328 127-163 (167)
143 2wbr_A GW182, gawky, LD47780P; 91.1 1.2 4.2E-05 36.9 9.0 34 295-328 43-78 (89)
144 3smz_A Protein raver-1, ribonu 91.0 0.84 2.9E-05 46.1 9.9 49 295-343 57-107 (284)
145 2ghp_A U4/U6 snRNA-associated 90.6 0.43 1.5E-05 48.6 7.3 39 184-227 39-77 (292)
146 2voo_A Lupus LA protein; RNA-b 90.2 0.47 1.6E-05 45.5 6.8 35 186-225 109-143 (193)
147 3pgw_S U1-70K; protein-RNA com 90.1 0.83 2.8E-05 49.7 9.3 78 186-330 102-181 (437)
148 2yh0_A Splicing factor U2AF 65 89.9 1.1 3.9E-05 42.1 9.2 78 184-328 112-191 (198)
149 3smz_A Protein raver-1, ribonu 89.8 1.6 5.4E-05 44.1 10.7 39 292-330 223-263 (284)
150 1l3k_A Heterogeneous nuclear r 89.4 0.98 3.3E-05 42.5 8.3 36 184-224 102-137 (196)
151 3tyt_A Heterogeneous nuclear r 89.1 1.3 4.5E-05 42.7 9.0 35 296-330 43-79 (205)
152 3u1l_A PRE-mRNA-splicing facto 88.7 1.6 5.6E-05 43.3 9.5 25 296-320 180-204 (240)
153 3pgw_A U1-A; protein-RNA compl 88.1 2 6.7E-05 43.3 10.0 40 294-333 51-92 (282)
154 3pgw_A U1-A; protein-RNA compl 85.5 2.6 8.7E-05 42.4 9.1 33 296-328 245-280 (282)
155 2g4b_A Splicing factor U2AF 65 85.0 3.9 0.00013 37.3 9.5 26 185-213 3-28 (172)
156 3sde_A Paraspeckle component 1 85.0 2.7 9.2E-05 42.0 8.9 75 186-328 96-176 (261)
157 2d9o_A DNAJ (HSP40) homolog, s 84.8 1.3 4.6E-05 37.5 5.5 37 293-329 52-88 (100)
158 2dit_A HIV TAT specific factor 84.8 1.7 5.8E-05 37.3 6.4 46 293-338 62-109 (112)
159 2ghp_A U4/U6 snRNA-associated 84.2 1.6 5.4E-05 44.2 6.9 38 185-226 116-153 (292)
160 1jmt_A Splicing factor U2AF 35 82.9 0.96 3.3E-05 38.6 3.8 37 293-329 66-104 (104)
161 3tyt_A Heterogeneous nuclear r 82.1 3 0.0001 40.1 7.6 24 295-318 165-188 (205)
162 3s6e_A RNA-binding protein 39; 80.9 1.5 5.1E-05 38.2 4.4 36 294-329 54-91 (114)
163 2dnl_A Cytoplasmic polyadenyla 80.6 1.4 4.7E-05 38.1 4.0 24 293-316 50-73 (114)
164 2dgt_A RNA-binding protein 30; 80.1 2.4 8.1E-05 34.7 5.3 40 182-226 6-45 (92)
165 1sjq_A Polypyrimidine tract-bi 79.9 2.2 7.5E-05 36.6 5.0 38 183-225 13-50 (105)
166 2dha_A FLJ20171 protein; RRM d 79.8 2.1 7E-05 37.8 5.0 47 173-226 14-62 (123)
167 2ytc_A PRE-mRNA-splicing facto 79.1 2.6 9E-05 33.7 5.2 38 183-225 9-46 (85)
168 2pe8_A Splicing factor 45; RRM 78.9 1.8 6E-05 37.0 4.1 37 294-330 55-93 (105)
169 2xs2_A Deleted in azoospermia- 77.9 2.5 8.5E-05 35.3 4.8 39 183-226 6-44 (102)
170 1fj7_A Nucleolin RBD1, protein 77.8 3.6 0.00012 34.2 5.8 36 292-328 55-92 (101)
171 3d2w_A TAR DNA-binding protein 77.6 1.7 5.8E-05 35.7 3.5 38 183-225 8-45 (89)
172 2fc9_A NCL protein; structure 77.6 2.7 9.2E-05 35.0 4.9 36 293-328 51-88 (101)
173 2cpx_A Hypothetical protein FL 77.0 3.8 0.00013 35.0 5.8 37 292-328 64-102 (115)
174 1wf0_A TDP-43, TAR DNA-binding 76.6 2 6.7E-05 34.9 3.7 35 185-224 4-38 (88)
175 1wf1_A RNA-binding protein RAL 76.3 2.3 7.8E-05 36.2 4.1 37 295-331 62-100 (110)
176 3v4m_A Splicing factor U2AF 65 75.9 2.3 7.9E-05 36.3 4.0 37 293-329 57-95 (105)
177 2ad9_A Polypyrimidine tract-bi 75.3 3.4 0.00012 36.2 5.0 37 184-225 29-65 (119)
178 1x5p_A Negative elongation fac 75.1 3.5 0.00012 34.1 4.9 37 293-329 47-85 (97)
179 2krb_A Eukaryotic translation 74.1 2.2 7.7E-05 34.0 3.3 26 293-318 45-70 (81)
180 1fjc_A Nucleolin RBD2, protein 73.5 3.2 0.00011 34.1 4.2 37 293-329 51-89 (96)
181 2cqh_A IGF-II mRNA-binding pro 73.1 2.9 9.9E-05 34.2 3.9 35 295-329 44-81 (93)
182 2db1_A Heterogeneous nuclear r 71.3 4.5 0.00015 35.0 4.8 40 184-226 15-55 (118)
183 1sjr_A Polypyrimidine tract-bi 69.0 6.8 0.00023 36.4 5.7 35 295-329 84-122 (164)
184 1wez_A HnRNP H', FTP-3, hetero 68.7 5 0.00017 33.8 4.4 37 184-226 13-49 (102)
185 2bz2_A Negative elongation fac 68.4 7.2 0.00025 33.9 5.6 37 293-329 71-109 (121)
186 2ytc_A PRE-mRNA-splicing facto 66.4 4.8 0.00016 32.1 3.7 22 294-315 47-68 (85)
187 2dgt_A RNA-binding protein 30; 65.4 7.2 0.00025 31.7 4.7 34 295-328 44-79 (92)
188 2e5i_A Heterogeneous nuclear r 65.1 10 0.00034 33.4 5.8 37 296-332 62-103 (124)
189 2krb_A Eukaryotic translation 64.7 6 0.0002 31.3 4.0 36 187-224 2-40 (81)
190 1wf0_A TDP-43, TAR DNA-binding 63.4 2.8 9.4E-05 34.0 1.7 36 294-329 41-76 (88)
191 3ue2_A Poly(U)-binding-splicin 63.0 5.1 0.00017 34.9 3.4 86 185-330 19-108 (118)
192 2diu_A KIAA0430 protein; struc 62.6 9.8 0.00034 31.9 4.9 57 183-246 6-68 (96)
193 1fxl_A Paraneoplastic encephal 61.9 8.4 0.00029 34.6 4.9 37 293-329 42-80 (167)
194 2hzc_A Splicing factor U2AF 65 60.9 10 0.00035 30.2 4.8 26 185-213 5-30 (87)
195 1wf1_A RNA-binding protein RAL 60.7 12 0.00041 31.5 5.4 34 185-223 26-60 (110)
196 3egn_A RNA-binding protein 40; 60.2 6.3 0.00022 35.1 3.7 37 292-328 89-127 (143)
197 1b7f_A Protein (SXL-lethal pro 59.9 9.5 0.00033 34.4 4.9 51 292-342 42-100 (168)
198 2cq2_A Hypothetical protein LO 59.3 6.7 0.00023 34.0 3.5 23 296-318 64-86 (114)
199 2ad9_A Polypyrimidine tract-bi 58.3 8.4 0.00029 33.6 4.0 34 295-328 67-104 (119)
200 2hgn_A Heterogeneous nuclear r 56.8 5.4 0.00018 35.9 2.5 36 184-225 44-79 (139)
201 1sjq_A Polypyrimidine tract-bi 56.5 9.2 0.00031 32.6 3.8 34 295-328 52-89 (105)
202 3d2w_A TAR DNA-binding protein 56.5 6.2 0.00021 32.2 2.7 35 294-328 47-81 (89)
203 3zzy_A Polypyrimidine tract-bi 56.2 9.8 0.00034 33.8 4.1 35 297-331 68-106 (130)
204 1wez_A HnRNP H', FTP-3, hetero 55.4 7.2 0.00024 32.7 3.0 23 292-314 52-74 (102)
205 3md3_A Nuclear and cytoplasmic 54.9 17 0.00059 32.4 5.8 78 184-328 85-164 (166)
206 2dhx_A Poly (ADP-ribose) polym 53.2 14 0.00046 31.4 4.2 35 185-222 7-44 (104)
207 3nmr_A Cugbp ELAV-like family 53.0 18 0.0006 32.7 5.6 68 184-319 93-160 (175)
208 2hzc_A Splicing factor U2AF 65 52.8 8.7 0.0003 30.6 3.0 25 293-318 51-75 (87)
209 2pe8_A Splicing factor 45; RRM 49.2 22 0.00074 30.0 5.0 40 185-226 7-48 (105)
210 1fje_B Nucleolin RBD12, protei 49.1 18 0.00062 32.8 5.0 37 292-329 51-89 (175)
211 2dnl_A Cytoplasmic polyadenyla 48.8 12 0.0004 32.0 3.3 28 184-214 6-33 (114)
212 2cqh_A IGF-II mRNA-binding pro 46.8 17 0.00057 29.4 3.8 28 184-214 6-33 (93)
213 2lcw_A RNA-binding protein FUS 51.9 4.3 0.00015 34.8 0.0 36 293-328 55-92 (116)
214 2fc9_A NCL protein; structure 45.0 15 0.00051 30.3 3.3 27 184-213 13-39 (101)
215 2db1_A Heterogeneous nuclear r 44.5 8 0.00027 33.3 1.6 22 292-313 58-79 (118)
216 3ue2_A Poly(U)-binding-splicin 44.0 18 0.00062 31.3 3.8 10 235-244 82-91 (118)
217 2dha_A FLJ20171 protein; RRM d 42.1 8.2 0.00028 33.8 1.2 23 292-314 65-87 (123)
218 4f02_A Polyadenylate-binding p 41.9 25 0.00086 33.4 4.9 36 186-226 103-138 (213)
219 2lcw_A RNA-binding protein FUS 47.5 5.6 0.00019 34.0 0.0 28 184-214 5-32 (116)
220 1fj7_A Nucleolin RBD1, protein 41.3 25 0.00084 28.9 4.1 27 185-214 16-42 (101)
221 2adc_A Polypyrimidine tract-bi 41.3 29 0.001 33.4 5.3 36 295-330 72-109 (229)
222 2hgn_A Heterogeneous nuclear r 41.2 13 0.00046 33.2 2.6 22 292-313 83-104 (139)
223 1qm9_A Polypyrimidine tract-bi 40.2 23 0.00079 32.9 4.2 35 295-329 41-77 (198)
224 1fjc_A Nucleolin RBD2, protein 39.5 22 0.00075 28.8 3.5 28 183-213 13-40 (96)
225 2cpx_A Hypothetical protein FL 38.2 27 0.00092 29.4 4.0 28 184-214 23-50 (115)
226 2dnr_A Synaptojanin-1; RRM dom 37.4 23 0.00079 29.3 3.1 32 296-328 50-83 (91)
227 2j8a_A Histone-lysine N-methyl 36.5 37 0.0013 30.2 4.5 35 187-226 3-41 (136)
228 3dxb_A Thioredoxin N-terminall 34.3 32 0.0011 32.8 4.3 38 293-330 173-212 (222)
229 2xs2_A Deleted in azoospermia- 32.7 8.1 0.00028 32.0 -0.4 22 292-313 47-68 (102)
230 2yh0_A Splicing factor U2AF 65 32.3 27 0.00094 32.2 3.3 26 185-213 3-28 (198)
231 3tht_A Alkylated DNA repair pr 28.9 36 0.0012 35.5 3.7 24 295-318 56-79 (345)
232 2rdd_B UPF0092 membrane protei 26.6 33 0.0011 23.2 1.9 17 527-543 4-20 (37)
233 2cq2_A Hypothetical protein LO 24.7 75 0.0026 27.2 4.4 35 185-224 24-60 (114)
234 1sjr_A Polypyrimidine tract-bi 24.5 78 0.0027 29.1 4.7 55 187-246 47-106 (164)
235 2dhx_A Poly (ADP-ribose) polym 23.8 1.1E+02 0.0037 25.9 5.0 45 296-340 48-95 (104)
236 2dit_A HIV TAT specific factor 23.2 1.3E+02 0.0043 25.1 5.7 38 184-223 13-58 (112)
237 3egn_A RNA-binding protein 40; 22.4 70 0.0024 28.0 3.9 28 184-214 43-70 (143)
238 3zzy_A Polypyrimidine tract-bi 22.0 91 0.0031 27.4 4.5 54 188-246 30-88 (130)
239 1ufw_A Synaptojanin 2; RNP dom 21.6 53 0.0018 27.3 2.7 21 297-318 60-80 (95)
240 2e5i_A Heterogeneous nuclear r 21.0 99 0.0034 26.8 4.5 52 189-246 28-84 (124)
No 1
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.76 E-value=0.0044 Score=52.74 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=55.6
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...-||.|+|||.+..+ +.|+++|+++.+-.+.++.+++|
T Consensus 7 ~~m~tlfV~nL~~~~te---e~L~~~F~~~G~i~v~~v~i~~d------------------------------------- 46 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVV---DSIMTALSPYASLAVNNIRLIKD------------------------------------- 46 (95)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHSTTTCCCCGGGEECCCC-------------------------------------
T ss_pred CccCEEEEeCCCCcCCH---HHHHHHHHhhCCccEEEEEEEec-------------------------------------
Confidence 44569999999998764 78999998875434444444221
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC------CceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP------MLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p------~~~~v~~A 328 (701)
...++..|.|||+|.+..+|+.|.+.++...+ ..+.|+.|
T Consensus 47 -------------------------~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 47 -------------------------KQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp -------------------------SSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred -------------------------CCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 00134568999999999999999998776532 24556665
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.013 Score=49.09 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=57.8
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
+..+||.|.|||.+..+ +.|+++|+++ +.+.++.+.+|-
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~------------------------------------ 41 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITE---DMLRGIFEPF--GKIDNIVLMKDS------------------------------------ 41 (95)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEECCS------------------------------------
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEeecC------------------------------------
Confidence 45689999999998654 6799999876 345555553210
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPN 332 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~ 332 (701)
...+..+.|||+|++..+|..|.+.+.... ...+.|+.|.++.
T Consensus 42 --------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 42 --------------------------DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp --------------------------SSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred --------------------------CCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 012456899999999999999998766543 3456777775443
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.59 E-value=0.008 Score=51.38 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=55.4
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
+..+|.|.|||.+..+ +.|+++|+++ |.+.++.+.+|- .
T Consensus 18 ~gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~---------------------------~--------- 56 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRDK---------------------------V--------- 56 (99)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECS---------------------------S---------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeecC---------------------------C---------
Confidence 3468999999998764 7799999986 466676664430 0
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
.++..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 57 --------------------------tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 57 --------------------------AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp --------------------------SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred --------------------------CCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 02335799999999999999998776542 234667766
No 4
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.55 E-value=0.014 Score=50.73 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=59.8
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
.+..+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++-
T Consensus 23 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 62 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITE---DMLRGIFEPF--GRIESIQLMMDS----------------------------------- 62 (108)
T ss_dssp CSSCEEEEEECCCSSCCH---HHHHHHHTTT--SCEEEEEEEEET-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC-----------------------------------
Confidence 455789999999997654 6799999876 356566554320
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPND 333 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~D 333 (701)
..++..|.|||+|.+..+|..|.+.+.... ...+.|+.|-+..|
T Consensus 63 ---------------------------~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~d 108 (108)
T 2jrs_A 63 ---------------------------ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 108 (108)
T ss_dssp ---------------------------TTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSCC
T ss_pred ---------------------------CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCCC
Confidence 002335799999999999999998776543 34577888766554
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.46 E-value=0.012 Score=51.48 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=58.9
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
+..+||.|.|+|.+..+ +.|+++|+++ |.+.++.+.+|-
T Consensus 4 ~p~~~lfV~nL~~~~te---~~L~~~F~~~--G~i~~v~i~~d~------------------------------------ 42 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRE---TFLKDMCRKY--GEVEEVEILLHP------------------------------------ 42 (110)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT------------------------------------
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEECC------------------------------------
Confidence 45689999999998764 7799999886 567777765430
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
...+..|.|||+|++..+|+.|.+.+.... ...+.|+.|+.
T Consensus 43 --------------------------~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 43 --------------------------RTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp --------------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred --------------------------CCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 002345899999999999999999876653 34566777753
No 6
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.33 E-value=0.024 Score=48.22 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=55.7
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++. .+.++.+.++ +
T Consensus 9 ~~~~~~l~v~nLp~~~t~---~~l~~~f~~~G--~i~~v~i~~~----------------------------~------- 48 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNE---QSLEQVFSKYG--QISEVVVVKD----------------------------R------- 48 (102)
T ss_dssp CCCCSEEEEESCCTTCCH---HHHHHHHHHHS--CCCEEEECCC----------------------------S-------
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeEEEEEEeC----------------------------C-------
Confidence 345689999999998754 67999998873 4555555221 0
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 49 ---------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 49 ---------------------------ETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp ---------------------------SSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred ---------------------------CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 012346899999999999999998776543 345666665
No 7
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.33 E-value=0.0092 Score=49.79 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=52.1
Q ss_pred eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcch
Q 039780 187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPN 266 (701)
Q Consensus 187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~ 266 (701)
+||.|.|+|.+..+ +.|+++|+++....+.++.+.+|-
T Consensus 2 ~~l~V~nL~~~~t~---~~l~~~F~~~G~~~v~~v~i~~~~--------------------------------------- 39 (90)
T 3p5t_L 2 IALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENR--------------------------------------- 39 (90)
T ss_dssp --CEEESCCTTCCH---HHHHHHHHTTTCCCCCCEEEEECT---------------------------------------
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHHhCCCceEEEEEEecC---------------------------------------
Confidence 68999999998754 779999987642256666654320
Q ss_pred hhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780 267 SFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP 331 (701)
Q Consensus 267 ~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P 331 (701)
..++..|.|||+|.+..+|..|.+.+.... ...+.|+.|..|
T Consensus 40 -----------------------~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 40 -----------------------ANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp -----------------------TTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred -----------------------CCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 012345899999999999999998777653 345667666443
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.31 E-value=0.015 Score=47.75 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=53.8
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
++.+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++-
T Consensus 4 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 42 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITT---AAIAAAFAPF--GRISDARVVKDM------------------------------------ 42 (87)
T ss_dssp --CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCceEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEecC------------------------------------
Confidence 45689999999998654 7799999986 356666553320
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..|.|||+|++..+|..|.+.+.... ...+.++.|
T Consensus 43 --------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 43 --------------------------ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --------------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred --------------------------CCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 002345799999999999999998766542 234556554
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.31 E-value=0.0075 Score=50.62 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=26.8
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC---CCCceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE---NPMLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~---~p~~~~v~~A 328 (701)
+..|.|||+|.+..+|..|.+.+.+. +...+.|+.|
T Consensus 42 ~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 42 QSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 45689999999999999998765332 2345667766
No 10
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.30 E-value=0.031 Score=47.91 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=56.7
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++. .+.++.+.+|
T Consensus 10 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------ 48 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDE---KDLKPLFEEFG--KIYELTVLKD------------------------------------ 48 (106)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHHHHS--CCCEEECCCC------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeeEEEEEec------------------------------------
Confidence 455789999999998764 67999999873 4555554211
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC-----CCceEEeeCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN-----PMLWVTEMAP 329 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~-----p~~~~v~~AP 329 (701)
....+..+.|||+|.+..+|..|.+.++... ...+.|+.|-
T Consensus 49 --------------------------~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 49 --------------------------RFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp --------------------------SSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred --------------------------CCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 0012346899999999999999998776543 3456777764
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.23 E-value=0.038 Score=46.72 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=55.6
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++ +.+.++.+.+|
T Consensus 7 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------ 45 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVMIYD------------------------------------ 45 (99)
T ss_dssp CSSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEECCC------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeC------------------------------------
Confidence 345689999999998764 7799999876 35555554221
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP 331 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P 331 (701)
....+..+.|||+|.+..+|..|.+ +.... ...+.|+.|-.+
T Consensus 46 --------------------------~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 46 --------------------------AEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp --------------------------TTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred --------------------------CCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 0012346899999999999999998 54332 345667776433
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.22 E-value=0.03 Score=47.31 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=55.7
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++. .+.++.+.++
T Consensus 6 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------- 43 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSE---EDLEKLFSAYG--PLSELHYPID------------------------------------- 43 (99)
T ss_dssp CSCEEEEEECCCTTCCH---HHHHHHHHTTS--CEEEEECCCC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEeEEEEEec-------------------------------------
Confidence 45689999999998754 67999998763 4444443111
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEP 331 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P 331 (701)
+ ...+..+.|||+|.+..+|..|.+.+... ....+.|+.|-.+
T Consensus 44 -------------~------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 44 -------------S------------LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp -------------T------------TTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred -------------C------------CCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 0 01345689999999999999999876644 2345667776443
No 13
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.20 E-value=0.02 Score=46.81 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=48.9
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
++.+||.|.|+|.+..+ +.|+++|+++. .+.++.+.+|.
T Consensus 5 ~~~~~l~V~nl~~~~~~---~~l~~~f~~~G--~i~~v~i~~~~------------------------------------ 43 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDD---KVLHAAFIPFG--DITDIQIPLDY------------------------------------ 43 (85)
T ss_dssp CCSSEEEEECCCTTCCH---HHHHHHHGGGS--CEEEEECCEET------------------------------------
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHhccC--CEEEEEEEECC------------------------------------
Confidence 45689999999998754 77999998863 45444432110
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
...+..+.|||+|.+..+|..|.+.++..
T Consensus 44 --------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 44 --------------------------ETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp --------------------------TTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred --------------------------CCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 01234689999999999999999876654
No 14
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.15 E-value=0.026 Score=47.39 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=28.0
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
+..+.|||+|.+..+|..|.+.++... ...+.|+.|-
T Consensus 46 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 46 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp SCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 456899999999999999998766542 3445677663
No 15
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.13 E-value=0.02 Score=47.15 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=27.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
..|.|||+|.+..+|..|.+.+.... ...+.++.|-
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 56899999999999999999776543 3345566653
No 16
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.12 E-value=0.029 Score=48.92 Aligned_cols=79 Identities=13% Similarity=0.231 Sum_probs=55.9
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
+..+||.|.|||.+..+ +.|+++|+++ +.+.++.+.+|-
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 61 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGD---QDLLQMFMPF--GNVVSAKVFIDK------------------------------------ 61 (115)
T ss_dssp STTCCEEEESCCSSCCH---HHHHHHHGGG--SCCSEEEEEECS------------------------------------
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC------------------------------------
Confidence 45689999999998764 7799999987 356666654320
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
+ ..+..+.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 62 ------------~--------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 62 ------------Q--------------TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp ------------S--------------SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred ------------C--------------CCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 0 02335799999999999999998766542 3345666653
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.11 E-value=0.011 Score=55.12 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=29.7
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
+++||.|.|||.+..+ +.|+++|+++ |.+.++.+.++
T Consensus 2 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 38 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSE---KDLRELFEQY--GAVYEINVLRD 38 (175)
T ss_dssp CCEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEE
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEec
Confidence 4689999999998764 7799999987 45777777765
No 18
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.10 E-value=0.035 Score=47.49 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=56.0
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++ +.+.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------ 50 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSE---PLLWELFLQA--GPVVNTHMPKD------------------------------------ 50 (105)
T ss_dssp CCTTTEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCBC------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec------------------------------------
Confidence 345689999999998754 6799999886 34545443211
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
. ...+..+.|||+|.+..+|..|.+.++... ...+.|+.|-
T Consensus 51 --------------~------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 51 --------------R------------VTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp --------------S------------SSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred --------------C------------CCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 0 012356899999999999999999776543 3456777764
No 19
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.07 E-value=0.022 Score=47.61 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=53.4
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
.++.++|.|.|||.+..+ +.|+++|+++. .+.++.+.++ +
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G--~v~~v~i~~~----------------------------~------- 52 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTN---NDLYRIFSKYG--KVVKVTIMKD----------------------------K------- 52 (94)
T ss_dssp CCCTTSEEEESCCTTSCH---HHHHHHTTTTS--CEEEEEECCC----------------------------S-------
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeEEEEEEeC----------------------------C-------
Confidence 456789999999997754 67999998763 4555554221 0
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..+.|||+|++..+|..|.+.+.... ...+.|+.|
T Consensus 53 ---------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 53 ---------------------------DTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp ---------------------------SSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred ---------------------------CCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 002345799999999999999998765432 233445544
No 20
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.05 E-value=0.029 Score=47.23 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=28.8
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPE 330 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~ 330 (701)
+..|.|||+|.+..+|..|.+.+... +...+.|+.|-.
T Consensus 42 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 42 RSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 44689999999999999999876654 234566777643
No 21
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.01 E-value=0.038 Score=45.92 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=54.3
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....++|.|.|||.+..+ +.|+++|+++ +.+.++.+.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~~~i~~~------------------------------------ 43 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTW---KMLKDKFNEC--GHVLYADIKME------------------------------------ 43 (92)
T ss_dssp SSSCCEEEECSCCTTCCH---HHHHHHHHTT--SCEEEEEEEES------------------------------------
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcc------------------------------------
Confidence 355689999999997654 6789999876 34444443210
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
..+..+.|||+|.+..+|..|.+.++... ...+.|+.|-.
T Consensus 44 ----------------------------~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 44 ----------------------------NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp ----------------------------SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred ----------------------------CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 02335799999999999999998766543 23455666533
No 22
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.99 E-value=0.036 Score=45.03 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=53.7
Q ss_pred eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcch
Q 039780 187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPN 266 (701)
Q Consensus 187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~ 266 (701)
+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++.
T Consensus 2 ~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~--------------------------------------- 37 (83)
T 3md1_A 2 FNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWDM--------------------------------------- 37 (83)
T ss_dssp EEEEEECCCTTCCH---HHHHHHHTTS--TTEEEEEEEECT---------------------------------------
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEcC---------------------------------------
Confidence 79999999998754 7789999876 456666554320
Q ss_pred hhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 267 SFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 267 ~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
...+..|.|||+|.+..+|..|.+.+.... ...+.++.|-
T Consensus 38 -----------------------~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 38 -----------------------QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp -----------------------TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred -----------------------CCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 002335799999999999999998776543 3345666663
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=95.98 E-value=0.048 Score=47.49 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=55.6
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++ +.+.++.+.++-
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 51 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITT---EDIKAAFAPF--GRISDARVVKDM----------------------------------- 51 (115)
T ss_dssp STTCEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC-----------------------------------
Confidence 345789999999998764 7799999987 356666654320
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..+.|||+|.+..+|+.|.+.+.... ...+.|+.|
T Consensus 52 ---------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 52 ---------------------------ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp ---------------------------TTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred ---------------------------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 002335799999999999999998776542 234556655
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.94 E-value=0.041 Score=46.60 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=55.4
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++ +.+.++.+.++
T Consensus 15 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------- 52 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTK---EELEEICKAH--GTVKDLRLVTN------------------------------------- 52 (100)
T ss_dssp CCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEEC-------------------------------------
Confidence 45689999999998754 6799999876 35555555322
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
+ ..+..+.|||+|++..+|..|.+.+... +...+.|+.|-
T Consensus 53 -------------~-------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 53 -------------R-------------AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp -------------T-------------TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred -------------C-------------CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 0 0233579999999999999999876643 33456777764
No 25
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.90 E-value=0.045 Score=46.21 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=50.1
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcc-eEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYL-SHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCF 261 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~-~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~ 261 (701)
....+||.|.|||.+..+ +.|+++|+++. .+. ++.+.+|-
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~~v~i~~~~---------------------------------- 46 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDE---NFISRAFATMG--ETVMSVKIIRNR---------------------------------- 46 (99)
T ss_dssp CSSSSEEEECSCCTTCCH---HHHHHHHHHTT--CCCCEEEEEECS----------------------------------
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHHhC--CcceEEEEeecC----------------------------------
Confidence 345689999999998754 77999999863 455 66654320
Q ss_pred cCcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 262 CGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 262 ~~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
...+..+.|||+|.+..+|+.|.+.+...
T Consensus 47 ----------------------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 47 ----------------------------LTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp ----------------------------SSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred ----------------------------CCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 00233479999999999999999876543
No 26
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.89 E-value=0.047 Score=46.71 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=55.2
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++ |.+.++.+.+|-
T Consensus 21 ~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~------------------------------------ 59 (106)
T 1p27_B 21 VEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLDR------------------------------------ 59 (106)
T ss_dssp TTBEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCeEEEEEEecC------------------------------------
Confidence 44689999999998754 6799999887 456666654320
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 60 --------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 60 --------------------------RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp --------------------------TTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred --------------------------CCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 002335799999999999999998766543 344566665
No 27
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=95.89 E-value=0.062 Score=47.12 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=55.1
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
..+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++
T Consensus 6 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~-------------------------------------- 42 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNE---KMLKAVFGKH--GPISEVLLIKD-------------------------------------- 42 (116)
T ss_dssp SCCEEEEECCTTTCCH---HHHHHHHHTS--SCCSEEEEECS--------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC--------------------------------------
Confidence 4579999999998654 7799999876 34656555321
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
+ ..+..+.|||+|++..+|..|.+.+.... ...+.|+.|-
T Consensus 43 ------------~-------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 43 ------------R-------------TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp ------------T-------------TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred ------------C-------------CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 0 02346899999999999999998776543 3456666663
No 28
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.89 E-value=0.075 Score=45.18 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=55.1
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....++|.|.|||.+..+ +.|+++|+++ +.+.++.+.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~------------------------------------ 50 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFN------------------------------------ 50 (103)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHGGGT--SCEEEEEEECC------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec------------------------------------
Confidence 345689999999998764 6799999886 35555554321
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
. ....+.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 51 -------------~---------------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 51 -------------E---------------RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp -------------T---------------TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred -------------C---------------CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 0 013579999999999999999876654 23446666664
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.87 E-value=0.032 Score=46.66 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=54.0
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
+..+||.|.|||.+..+ +.|+++|+++ +.+.++.+.++-
T Consensus 13 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~------------------------------------ 51 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYDQ------------------------------------ 51 (95)
T ss_dssp CGGGCEEEESCCSSCCH---HHHHHHHHTT--SCEEEEEEEECS------------------------------------
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEEcC------------------------------------
Confidence 45689999999998654 6799999886 356666554320
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..+.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 52 --------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 52 --------------------------QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp --------------------------SSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred --------------------------CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 001235799999999999999998765432 234455554
No 30
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=95.85 E-value=0.061 Score=45.89 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=55.9
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
+..+||.|.|||.+..+ +.|+++|+++. .+.++.+.++
T Consensus 13 ~~~~~l~v~nLp~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------- 50 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSE---EDVLRLFQPFG--VIDECTVLRG------------------------------------- 50 (105)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHHTTTS--CEEEEEEEEC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEEC-------------------------------------
Confidence 45689999999998754 67999998763 4555555322
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--C---CceEEeeCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--P---MLWVTEMAP 329 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p---~~~~v~~AP 329 (701)
. ..+..+.|||+|.+..+|..|.+.++... . ..+.|+.|-
T Consensus 51 ------------~--------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 51 ------------P--------------DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp ------------S--------------SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred ------------C--------------CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 0 01234799999999999999998776543 2 456777763
No 31
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.85 E-value=0.018 Score=53.45 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=28.6
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
+.+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++
T Consensus 2 ~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i~~~ 38 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTD---RELYALFRAI--GPINTCRIMRD 38 (168)
T ss_dssp CCSEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEE
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEe
Confidence 4689999999998764 6799999986 45667766654
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=95.81 E-value=0.037 Score=48.44 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=53.3
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
+..+|.|.|||.+..+ +.|+++|+++ |.+.++.+.+|.
T Consensus 4 ~~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~d~------------------------------------- 41 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDE------------------------------------- 41 (115)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET-------------------------------------
T ss_pred CCCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEeecC-------------------------------------
Confidence 3468999999998764 7899999987 466666664320
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
....|.|||+|.+..+|+.|.+.++... ...+.|+.|
T Consensus 42 ---------------------------~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 42 ---------------------------NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp ---------------------------TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ---------------------------CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 0113799999999999999998766543 234556655
No 33
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.80 E-value=0.073 Score=45.27 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=55.0
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++. .+.++.+.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------- 50 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTE---VLILQLFSQIG--PCKSCKMITE------------------------------------- 50 (103)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHHHHHS--CEEEEEEECC-------------------------------------
T ss_pred CCCCEEEEeCCCccCCH---HHHHHHHHhcC--CEeEEEEEec-------------------------------------
Confidence 45689999999998754 77999998873 4555555321
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPE 330 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~ 330 (701)
.....+.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 51 ---------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 51 ---------------------------HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp ---------------------------CCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred ---------------------------CCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 0012479999999999999999876543 234566777643
No 34
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.77 E-value=0.043 Score=46.74 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=54.2
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++ +.+.++.+.+|
T Consensus 11 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~------------------------------------- 48 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSP---DSLRRVFEKY--GRVGDVYIPRE------------------------------------- 48 (103)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCBC-------------------------------------
T ss_pred CCCeEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeC-------------------------------------
Confidence 45689999999998754 7799999876 34544443211
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
. ...+..+.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 49 -------------~------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 49 -------------P------------HTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp -------------S------------SSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred -------------C------------CCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 0 012346899999999999999998766543 234566665
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.75 E-value=0.041 Score=46.89 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=55.8
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++ +.+.++.+.++-
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 51 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRE---TDLQELFRPF--GSISRIYLAKDK----------------------------------- 51 (103)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHTTSTTT--CCEEEEEEEECS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeecC-----------------------------------
Confidence 355789999999998754 6788999876 356566553320
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
...+..+.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 52 ---------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 52 ---------------------------TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp ---------------------------SSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred ---------------------------CCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 002335799999999999999999766543 3345666663
No 36
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=95.70 E-value=0.065 Score=47.99 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCeeec
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDVLWS 337 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~ 337 (701)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|-.+.|....
T Consensus 71 ~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 71 NSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp SCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred cCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 45899999999999999998876653 345678888777666543
No 37
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=95.69 E-value=0.046 Score=45.71 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=54.2
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++ +.+.++.+.+|
T Consensus 13 ~~~~~~l~v~nlp~~~~~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------ 51 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVRE---EILYELFLQA--GPLTKVTICKD------------------------------------ 51 (95)
T ss_dssp TTGGGEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC------------------------------------
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC------------------------------------
Confidence 355789999999998754 7799999886 35555555322
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
. ..+..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 52 -------------~--------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 52 -------------R--------------EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp -------------T--------------TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred -------------C--------------CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 0 02235799999999999999998766543 233445544
No 38
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.68 E-value=0.041 Score=48.03 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=54.2
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++ +.+.++.+.++ +
T Consensus 14 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~---------------------------~-------- 53 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTD---ASLRKYFEGF--GDIEEAVVITD---------------------------R-------- 53 (116)
T ss_dssp SCSSSEEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEESCC---------------------------S--------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeeEEEEEEc---------------------------C--------
Confidence 345689999999998764 7799999876 34555554221 0
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC-CCCceEEeeC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE-NPMLWVTEMA 328 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~-~p~~~~v~~A 328 (701)
...+..+.|||+|.+..+|+.|.+.+... ....+.|+.|
T Consensus 54 ---------------------------~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 54 ---------------------------QTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp ---------------------------SSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred ---------------------------CCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 01234689999999999999998865531 2234566666
No 39
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.68 E-value=0.058 Score=45.96 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=54.4
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|++.+ +.+.++.+.+|
T Consensus 7 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~~-G~v~~v~i~~~------------------------------------- 45 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDD---GMLYEFFVKVY-PSCRGGKVVLD------------------------------------- 45 (104)
T ss_dssp SCCCCEEEECCCTTCCH---HHHHHHHHHHC-TTEEEEEEEEC-------------------------------------
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHhC-CCeEEEEEEEC-------------------------------------
Confidence 45689999999998754 77999999833 45666665432
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC---CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN---PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~---p~~~~v~~A 328 (701)
+ ..+..+.|||+|.+..+|..|.+.++... ...+.++.|
T Consensus 46 -------------~-------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 46 -------------Q-------------TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp -------------T-------------TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred -------------C-------------CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 0 01234799999999999999998766543 234455555
No 40
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.67 E-value=0.042 Score=46.77 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=54.7
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++ +.+.++.+.++- .
T Consensus 13 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~---------------------------~-------- 52 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTE---QDLKEYFSTF--GEVLMVQVKKDL---------------------------K-------- 52 (103)
T ss_dssp CCCCCEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEEECS---------------------------S--------
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCeEEEEEEecC---------------------------C--------
Confidence 44679999999998764 7799999887 356666654320 0
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCCCceEEeeCCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPE 330 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~~v~~AP~ 330 (701)
..+..+.|||+|.+..+|..|.+..+.-+...+.++.|-.
T Consensus 53 ---------------------------~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 53 ---------------------------TGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp ---------------------------SCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred ---------------------------CCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 0233579999999999999998842222334566766643
No 41
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.66 E-value=0.054 Score=46.26 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=54.9
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++ + +.++.+.++-
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G-i~~v~i~~~~----------------------------------- 50 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPREP----------------------------------- 50 (104)
T ss_dssp SSSCEEEEEESCCSSCCH---HHHHHHTTTS--C-EEEEECCBCS-----------------------------------
T ss_pred CCCCCEEEEeCCCCcCCH---HHHHHHHHHC--C-ceEEEEecCC-----------------------------------
Confidence 345689999999998764 7799999876 3 6555542210
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEP 331 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P 331 (701)
+ ...+..+.|||+|.+..+|..|. .+... ....+.|+.|-.+
T Consensus 51 -------------~-------------~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 51 -------------S-------------NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp -------------S-------------CTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred -------------C-------------CCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 0 00234689999999999999999 55543 2344667776433
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=95.66 E-value=0.067 Score=45.19 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=26.6
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
+..|.|||+|.+..+|+.|.+.+.... ...+.|+.|
T Consensus 61 ~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 61 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp SEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 345899999999999999998766543 234555554
No 43
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=95.64 E-value=0.056 Score=46.62 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=53.9
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++
T Consensus 24 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------- 61 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLD------------------------------------- 61 (110)
T ss_dssp TTBEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEECCBC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEec-------------------------------------
Confidence 45689999999997654 6799999887 34544443211
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...++..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 62 -------------------------~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 62 -------------------------RRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp -------------------------TTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred -------------------------CCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 0013446899999999999999998766542 334556655
No 44
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=95.61 E-value=0.048 Score=44.92 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=52.7
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
+.+||.|.|+|.+..+ +.|+++|+++ |.+.++.+.++.
T Consensus 5 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------- 42 (89)
T 3ucg_A 5 DARSIYVGNVDYGATA---EELEAHFHGC--GSVNRVTILCDK------------------------------------- 42 (89)
T ss_dssp HHTEEEEESCCTTCCH---HHHHHHHGGG--CCEEEEEEEESC-------------------------------------
T ss_pred cCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecC-------------------------------------
Confidence 3579999999998754 7799999986 456666554320
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..+.|||+|.+..+|..|. .+.... ...+.++.|
T Consensus 43 -------------------------~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 43 -------------------------FSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp -------------------------SSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred -------------------------CCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 01234689999999999999988 554432 234556665
No 45
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.58 E-value=0.03 Score=47.73 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=56.5
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
.+.+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++-
T Consensus 6 ~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~~------------------------------------ 44 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATE---EQLKDIFSEV--GPVVSFRLVYDR------------------------------------ 44 (104)
T ss_dssp HHHSCEEEESCCTTSCH---HHHHHHHHTT--SCCSEEEEEEET------------------------------------
T ss_pred CCccEEEEeCCCCcCCH---HHHHHHHHhc--CCeeEEEEEeCC------------------------------------
Confidence 34689999999998654 6799999876 355566553320
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP 331 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P 331 (701)
...+..|.|||+|.+..+|..|.+.+.... ...+.|+.|-.+
T Consensus 45 --------------------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 45 --------------------------ETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp --------------------------TTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred --------------------------CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 002335799999999999999998766543 345667776443
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.58 E-value=0.039 Score=46.86 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=54.4
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
..+.++|.|.|||.+..+ +.|+++|+++ +.+.++.+.+|
T Consensus 9 ~~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~------------------------------------ 47 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLD------------------------------------ 47 (102)
T ss_dssp CCCCSCEEEESCCSSCCH---HHHHHHHTTT--SCCCCEECCCC------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHhhcc--CCEEEEEEEec------------------------------------
Confidence 345689999999998654 7799999876 34444443211
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
....+..+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 48 --------------------------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 48 --------------------------YETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp --------------------------SSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred --------------------------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 001245689999999999999999876543 23445666663
No 47
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=95.58 E-value=0.057 Score=49.86 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=56.6
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++. .+.++.+.++-
T Consensus 37 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~~------------------------------------ 75 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTE---EQIYELFSKSG--DIKKIIMGLDK------------------------------------ 75 (156)
T ss_dssp TTCCEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEecC------------------------------------
Confidence 35689999999997654 77999998874 56666654320
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
+ ..+..+.|||+|.+..+|..|.+.+.... ...+.|+.|..
T Consensus 76 ------------~--------------~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 76 ------------M--------------KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp ------------T--------------TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred ------------C--------------CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 0 02234799999999999999998766542 34566777643
No 48
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.57 E-value=0.07 Score=45.97 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=54.6
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++. .+.++.+.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------- 50 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEE---EALGEVLQQFG--DLKYVRVVLH------------------------------------- 50 (111)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTTS--CEEEEECCBC-------------------------------------
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeEEEEEEec-------------------------------------
Confidence 34689999999998754 77999998763 4555444221
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhc------cC--CCCceEEeeCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILH------SE--NPMLWVTEMAP 329 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~------~~--~p~~~~v~~AP 329 (701)
....+..+.|||+|.+..+|..|.+.+. .. ....+.|+.|-
T Consensus 51 -------------------------~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 51 -------------------------PDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp -------------------------SSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred -------------------------CCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 0012346899999999999999998775 22 23456676663
No 49
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.52 E-value=0.085 Score=45.09 Aligned_cols=82 Identities=26% Similarity=0.343 Sum_probs=56.1
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....++|.|.|||.+..+ +.|+++|+++. .+.++.+.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~~----------------------------------- 51 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQ---REIRELFSTFG--ELKTVRLPKKM----------------------------------- 51 (107)
T ss_dssp SSCCCCEEEESCCTTCCH---HHHHHHHHTTS--CEEEEECCCCC-----------------------------------
T ss_pred CCCCCEEEEeCCCCcCCH---HHHHHHHHccC--CeEEEEEecCC-----------------------------------
Confidence 345689999999998754 67999998863 45444432110
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHh-ccC--CCCceEEeeCCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEIL-HSE--NPMLWVTEMAPE 330 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~-~~~--~p~~~~v~~AP~ 330 (701)
+ ...+..+.|||+|.+..+|..|.+.+ ... ....+.|+.|-.
T Consensus 52 --------------~------------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 52 --------------T------------GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp --------------S------------SSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred --------------C------------CCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 0 01345689999999999999999887 443 234567777643
No 50
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.49 E-value=0.064 Score=45.68 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=54.3
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++ + +.++.+.+|-
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g-i~~v~i~~~~----------------------------------- 50 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQ---GDIDAIFKDL--S-IRSVRLVRDK----------------------------------- 50 (103)
T ss_dssp SSSCEEEEEESCCTTCCH---HHHHHHTTTS--C-EEEEEEEECS-----------------------------------
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhC--C-ceEEEEeecC-----------------------------------
Confidence 345689999999998764 7799999887 3 6666664320
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
...+..+.|||+|.+..+|..|. .+... ....+.|+.|-
T Consensus 51 ---------------------------~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 51 ---------------------------DTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp ---------------------------SSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred ---------------------------CCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 00233579999999999999998 44433 22345676664
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=95.47 E-value=0.071 Score=47.18 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=54.4
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++. .+.++.+.++
T Consensus 19 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------ 57 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATE---EDIHDKFAEYG--EIKNIHLNLD------------------------------------ 57 (126)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHHHHHTTS--CEEEEECCBC------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEec------------------------------------
Confidence 345689999999998754 77999998763 4544443211
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
....+..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 58 --------------------------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 58 --------------------------RRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp --------------------------TTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred --------------------------CCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 0013446899999999999999998776543 334556655
No 52
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=95.47 E-value=0.043 Score=45.10 Aligned_cols=38 Identities=13% Similarity=0.419 Sum_probs=28.5
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH 225 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~ 225 (701)
....+||.|.|||.+..+ +.|+++|+++ |.+.++.+.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 45 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSK---KDLKDYFTKF--GEVVDCTIKM 45 (87)
T ss_dssp CSCTTEEEEECCCTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEee
Confidence 355689999999998754 7799999876 4566666543
No 53
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.45 E-value=0.067 Score=46.26 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=54.0
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++ |.+.++.+.+|
T Consensus 26 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~------------------------------------ 64 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFN------------------------------------ 64 (109)
T ss_dssp TTCCCEEEEESCCTTCCH---HHHHHHGGGT--CCCSCEEECCB------------------------------------
T ss_pred CCCCCEEEEECCCCcCCH---HHHHHHHHhc--CCEEEEEEEEC------------------------------------
Confidence 345689999999998754 7799999886 34555544211
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
. .+..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 65 -------------~---------------~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 65 -------------E---------------RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp -------------T---------------TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -------------C---------------CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 0 1235899999999999999998766542 334556665
No 54
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=95.45 E-value=0.034 Score=47.35 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=27.5
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCCC---CceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSENP---MLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~p---~~~~v~~A 328 (701)
+..|.|||+|.+..+|+.|.+.+....- ..+.|..|
T Consensus 52 ~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 52 KTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp EECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 3468999999999999999987765432 34566665
No 55
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.44 E-value=0.066 Score=45.85 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=55.0
Q ss_pred CCCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCc
Q 039780 182 PNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCF 261 (701)
Q Consensus 182 ~~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~ 261 (701)
.....++|.|.|||.+..+ +.|+++|+++ +.+.++.+.++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~----------------------------------- 64 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVHYD----------------------------------- 64 (107)
T ss_dssp CCCCSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC-----------------------------------
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC-----------------------------------
Confidence 3455789999999998754 6799999876 35555555332
Q ss_pred cCcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 262 CGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 262 ~~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
. ..+..+.|||+|.+..+|+.|.+.+.... ...+.|+.|
T Consensus 65 ---------------~-------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 65 ---------------R-------------SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp ---------------T-------------TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred ---------------C-------------CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 0 02335799999999999999998766543 233455555
No 56
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.02 Score=52.88 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=28.7
Q ss_pred eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780 187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRS 227 (701)
Q Consensus 187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~ 227 (701)
|||.|.|||.+..+ +.|+++|+++ |.+.++.+.++-
T Consensus 1 R~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~ 36 (166)
T 3md3_A 1 RVLYVGNLDKAITE---DILKQYFQVG--GPIANIKIMIDK 36 (166)
T ss_dssp CEEEEEEEETTCCH---HHHHHHHGGG--SCEEEEEEECCC
T ss_pred CEEEECCCCCcCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 69999999998764 7799999987 467778776654
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.41 E-value=0.11 Score=44.72 Aligned_cols=35 Identities=20% Similarity=0.036 Sum_probs=26.4
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
..+.|||+|++..+|..|.+.++... ...+.|+.|
T Consensus 60 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 60 GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35799999999999999998766542 334566665
No 58
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.40 E-value=0.046 Score=46.02 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=30.3
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEPN 332 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P~ 332 (701)
+..+.|||+|.+..+|+.|.+.+... ....+.|+.|-.|.
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 34589999999999999999877654 33456777776553
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.37 E-value=0.074 Score=45.22 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=54.8
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....+||.|.|||.+..+ +.|+++|+++. .+.++.+.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------ 50 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDD---ERLRKAFSPFG--TITSAKVMME------------------------------------ 50 (103)
T ss_dssp CSSCCCEEEECCCTTCCH---HHHHHTTTTTS--CEEEEEEEEC------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEEcC------------------------------------
Confidence 345689999999998764 67899998753 4545444211
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
..+..+.|||+|.+..+|..|.+.++... ...+.|+.|-
T Consensus 51 ----------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 51 ----------------------------GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp ----------------------------SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred ----------------------------CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 02335799999999999999998766543 3456677663
No 60
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.35 E-value=0.058 Score=49.65 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=29.8
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRS 227 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~ 227 (701)
+.+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++-
T Consensus 1 s~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~~~~~~ 38 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQ---EEFRSLFGSI--GEIESCKLVRDK 38 (167)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT
T ss_pred CcceEEEcCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCC
Confidence 3579999999998754 7799999986 457777777653
No 61
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=95.34 E-value=0.046 Score=47.83 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=49.1
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
+..+||.|.|||.+..+ +.|+++|+++ |.+.++.+.+|
T Consensus 38 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~------------------------------------- 75 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTD---TDLASTFLPF--GNVISAKVFID------------------------------------- 75 (118)
T ss_dssp CCSEEEEEECSCTTCCH---HHHHHHTTTS--CEEEEEEECCC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeC-------------------------------------
Confidence 45689999999998754 7799999876 34555544211
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
. ...+..+.|||+|.+..+|..|.+.++..
T Consensus 76 ------------~-------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 76 ------------K-------------QTSLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp ------------S-------------SSSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred ------------C-------------CCCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 0 01345689999999999999999876554
No 62
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=95.34 E-value=0.12 Score=45.62 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=54.9
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++
T Consensus 33 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~------------------------------------- 70 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYD------------------------------------- 70 (124)
T ss_dssp SSCEEEEEESCCSSCCH---HHHHHHHHTT--SCCSEEEEECC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEC-------------------------------------
Confidence 34579999999997654 6799999876 35555555321
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
+ ..+..|.|||+|.+..+|..|.+.+... +...+.|+.|.
T Consensus 71 -------------~-------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 71 -------------R-------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp -------------S-------------SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred -------------C-------------CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 0 0234689999999999999999876543 23456666664
No 63
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.32 E-value=0.11 Score=43.78 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=28.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP 331 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P 331 (701)
.+.|||+|++..+|..|.+.++... ...+.|+.|-.+
T Consensus 51 kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 51 KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 3799999999999999998776543 345677777443
No 64
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.31 E-value=0.079 Score=43.89 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=53.0
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
....++|.|.|||.+..+ +.|+++|+++ .+.++.+.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~---~i~~v~i~~~------------------------------------ 44 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTE---KNVMEFLAPL---KPVAIRIVRN------------------------------------ 44 (91)
T ss_dssp CCCCCEEEEECCCSSCCH---HHHHHHHTTS---CCSEEEEEEC------------------------------------
T ss_pred CCCccEEEEECCCCCCCH---HHHHHHHhhC---CceEEEEEEC------------------------------------
Confidence 345689999999998754 6799999876 3555555321
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..|.|||+|.+..+|+.|.+ +.... ...+.|..|
T Consensus 45 ---------------------------~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 45 ---------------------------AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp ---------------------------TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred ---------------------------CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 002345899999999999999998 55432 334556665
No 65
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.29 E-value=0.063 Score=48.34 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=48.5
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++. .+.++.+.++
T Consensus 61 ~~~~~l~v~nlp~~~~~---~~l~~~f~~~G--~i~~v~i~~~------------------------------------- 98 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDD---KVLHAAFIPFG--DITDIQIPLD------------------------------------- 98 (140)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHHGGGS--CEEEEECCCC-------------------------------------
T ss_pred CCCcEEEEEeCCCCCCH---HHHHHHHHhcC--CEEEEEEeec-------------------------------------
Confidence 34689999999998654 77999998863 4444443211
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
....+..|.|||+|.+..+|..|.+.+...
T Consensus 99 -------------------------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 99 -------------------------YETEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp -------------------------TTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred -------------------------CCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 001345689999999999999999876543
No 66
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.23 E-value=0.11 Score=45.03 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=54.0
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+.+ |.+.++.+.++
T Consensus 6 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~------------------------------------- 43 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITA---EEMYDIFGKY--GPIRQIRVGNT------------------------------------- 43 (115)
T ss_dssp TCCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEECS-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeC-------------------------------------
Confidence 34579999999997754 6799999876 34555554211
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
.+..|.|||+|.+..+|..|.+.++... ...+.++.|-
T Consensus 44 ----------------------------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 44 ----------------------------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp ----------------------------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred ----------------------------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 1125799999999999999999776553 3456677664
No 67
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.23 E-value=0.07 Score=44.86 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=54.9
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++ +.+.++.+.++-.
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 42 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTE---ETLKGVFSKV--GAIKSCTISKKKN----------------------------------- 42 (98)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEEEC-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-----------------------------------
Confidence 34689999999998754 7799999876 3566666543210
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
+....+..+.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 43 ------------------------~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 43 ------------------------KAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp ------------------------TTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred ------------------------CCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 00002345799999999999999999766542 234556555
No 68
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.16 E-value=0.11 Score=44.89 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=27.9
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
.+..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 62 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 62 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred CCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 3557899999999999999998766542 334566665
No 69
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.16 E-value=0.06 Score=46.24 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=28.6
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV 224 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~ 224 (701)
....+||.|.|+|.+..+ +.|+++|+++ |.+.++.+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te---~~L~~~F~~~--G~v~~v~i~ 44 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMR 44 (103)
T ss_dssp CSGGGCEEEECCCTTCCH---HHHHHHHHTS--SCEEEEEEE
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHhhc--CCEEEEEEE
Confidence 355689999999998764 7799999986 456666664
No 70
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=95.15 E-value=0.046 Score=45.20 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.4
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCCC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEPN 332 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P~ 332 (701)
.|.|||+|.+..+|..|.+.++.. ....+.++.||...
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 479999999999999999977654 34456788887643
No 71
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.10 E-value=0.15 Score=42.75 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=25.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA 328 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A 328 (701)
+.|||+|.+..+|+.|.+.+... ....+.|+.|
T Consensus 53 g~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 53 LKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 57999999999999999876654 2345667766
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.07 E-value=0.092 Score=47.02 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=55.1
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...++|.|.|||.+..+ +.|+++|+++ |.+.++.+.+|-
T Consensus 44 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~------------------------------------ 82 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYDQ------------------------------------ 82 (129)
T ss_dssp CCSSCBCEETCTTSCCH---HHHHHHHTTT--SCEEEEEEECCS------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC------------------------------------
Confidence 34689999999998764 6799999876 355565553220
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..+.|||+|++..+|..|.+.+.... ...+.|+.|
T Consensus 83 --------------------------~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 83 --------------------------QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp --------------------------SSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred --------------------------CCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 012346899999999999999998776543 234566665
No 73
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.02 E-value=0.068 Score=42.62 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=20.6
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhc
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILH 316 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~ 316 (701)
+..|.|||+|++..+|..|.+...
T Consensus 40 ~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 40 RSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp SCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CcCceEEEEEcCHHHHHHHHHhCC
Confidence 456899999999999999998665
No 74
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=95.00 E-value=0.012 Score=57.73 Aligned_cols=37 Identities=14% Similarity=0.041 Sum_probs=30.5
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRS 227 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~ 227 (701)
.+||.|.|||.+..+ +.|+++|+++ |.+.++.+.+|-
T Consensus 15 ~~tlfVgnLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~ 51 (213)
T 4f02_A 15 MASLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRDM 51 (213)
T ss_dssp CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEeccc
Confidence 479999999998764 7899999987 568888888763
No 75
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.99 E-value=0.21 Score=41.13 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=25.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
+.|||+|.+..+|..|.+.++.. +...+.|+.|-
T Consensus 43 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 43 NYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 58999999999999999876654 23456676663
No 76
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.90 E-value=0.074 Score=43.41 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=48.3
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
..+||.|.|||.+..+ +.|+++|+++ +.+.++.+.++-
T Consensus 4 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~------------------------------------- 41 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKAILDK------------------------------------- 41 (85)
T ss_dssp CCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEEECCS-------------------------------------
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC-------------------------------------
Confidence 4579999999998764 6788888876 355555543210
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
...+..|.|||+|.+..+|..|.+.++..
T Consensus 42 -------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (85)
T 1x4e_A 42 -------------------------TTNKCKGYGFVDFDSPSAAQKAVTALKAS 70 (85)
T ss_dssp -------------------------SSCSCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred -------------------------CCCCcCcEEEEEECCHHHHHHHHHHhcCC
Confidence 01234689999999999999999876544
No 77
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=94.88 E-value=0.15 Score=43.57 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=25.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC----CCceEEeeC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSEN----PMLWVTEMA 328 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~~----p~~~~v~~A 328 (701)
|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 58 g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 58 RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 689999999999999998766543 334556655
No 78
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.86 E-value=0.14 Score=44.28 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=53.0
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++ +.+.++.+.++
T Consensus 13 ~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~------------------------------------- 50 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGW---KKLKEVFSMA--GVVVRADILED------------------------------------- 50 (114)
T ss_dssp CCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC-------------------------------------
Confidence 44689999999998754 7799999876 35555554322
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
+ ..+..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 51 ------------~--------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 51 ------------K--------------DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp ------------T--------------TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ------------C--------------CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 0 01234799999999999999998766542 233455554
No 79
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=94.84 E-value=0.056 Score=45.16 Aligned_cols=36 Identities=19% Similarity=0.080 Sum_probs=25.9
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
+..+.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 345899999999999999998766542 233445544
No 80
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=94.78 E-value=0.045 Score=45.31 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=25.7
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
+..|.|||+|++.. |..|.+.+.... ...+.|+.|..
T Consensus 41 ~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 41 KPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34689999999999 998888766543 33455666643
No 81
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.78 E-value=0.22 Score=41.93 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=25.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA 328 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A 328 (701)
+.|||+|++..+|..|.+.++.. ....+.|+.|
T Consensus 52 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 52 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 59999999999999999876654 2345666665
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.74 E-value=0.17 Score=43.78 Aligned_cols=67 Identities=7% Similarity=0.244 Sum_probs=48.8
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
....||.|.|||.+..+ +.|+++|+++ +.+.++.+.+|
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~------------------------------------- 60 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDE---QELENMLKPF--GQVISTRILRD------------------------------------- 60 (114)
T ss_dssp CCTTEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEEEC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC-------------------------------------
Confidence 45679999999998754 6799999876 34555555322
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
. ..+..+.|||+|.+..+|+.|.+.+...
T Consensus 61 -------------~-------------~g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 61 -------------S-------------SGTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp -------------S-------------SSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred -------------C-------------CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 0 0223479999999999999999976654
No 83
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=94.69 E-value=0.15 Score=45.86 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=54.8
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
..+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++-
T Consensus 41 ~~~~l~V~nLp~~~~~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------- 78 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDE---VQLRQLFERY--GPIESVKIVCDR------------------------------------- 78 (139)
T ss_dssp TTSEEEEESCSTTCCH---HHHHHHHHHH--SCEEEEEEEEET-------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC-------------------------------------
Confidence 3579999999998764 6799999987 456666654320
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA 328 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A 328 (701)
...+..+.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 79 -------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 79 -------------------------ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp -------------------------TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred -------------------------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 00233579999999999999999876653 2345666665
No 84
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.66 E-value=0.21 Score=41.66 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=26.5
Q ss_pred EEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780 298 AFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP 331 (701)
Q Consensus 298 aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P 331 (701)
|||+|.+..+|..|.+.+.... ...+.|+.|.+.
T Consensus 57 afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 57 VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 9999999999999998766543 345678887544
No 85
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=94.56 E-value=0.093 Score=45.37 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=51.8
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++ |.+.++.+.+|
T Consensus 23 ~~~~~lfV~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~~------------------------------------- 60 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRD------------------------------------- 60 (109)
T ss_dssp ---CCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECCC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcc--CCeEEEEEEEC-------------------------------------
Confidence 44689999999998764 6799999876 45555555321
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC-CCCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE-NPMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~-~p~~~~v~~A 328 (701)
...++..|.|||+|.+..+|..|.+..... +...+.++.|
T Consensus 61 -------------------------~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 61 -------------------------PLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp -------------------------TTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred -------------------------CCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 001344689999999999999998864311 2334556665
No 86
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.55 E-value=0.14 Score=43.38 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=27.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
..+.|||+|.+..+|..|.+.+.... ...+.|+.|-.
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 35799999999999999998766543 34566777643
No 87
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.55 E-value=0.11 Score=44.96 Aligned_cols=35 Identities=26% Similarity=0.109 Sum_probs=27.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
+.|||+|.+..+|+.|.+.++... ...+.|+.|+.
T Consensus 47 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 47 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 579999999999999998876553 34566777753
No 88
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.53 E-value=0.25 Score=42.39 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=25.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeCC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMAP 329 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~AP 329 (701)
+.|||+|++..+|..|.+.+... +...+.++.|-
T Consensus 52 g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 52 RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 68999999999999998865432 23456666663
No 89
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=94.52 E-value=0.13 Score=47.69 Aligned_cols=79 Identities=11% Similarity=0.065 Sum_probs=55.2
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
..++|.|.|||.+..+ +.|+++|+++.+..+.++.+++|-
T Consensus 54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d~------------------------------------- 93 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAENR------------------------------------- 93 (156)
T ss_dssp --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEECT-------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEecC-------------------------------------
Confidence 4589999999998764 779999988743266676665430
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
..++..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 94 -------------------------~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 94 -------------------------ANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -------------------------TTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred -------------------------CCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 002345899999999999999999876543 234556655
No 90
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=94.51 E-value=0.09 Score=41.70 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.3
Q ss_pred cCCceEEEEeCCHHHHHHHHH
Q 039780 293 KENAVAFVCFKTRYAAVVAAE 313 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q 313 (701)
+..|.|||+|++..+|+.|.+
T Consensus 39 ~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 39 RHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp TSCBEEEEECSCHHHHHHHHS
T ss_pred CcCcEEEEEECCHHHHHHHHH
Confidence 456899999999999998876
No 91
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=94.44 E-value=0.15 Score=48.43 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=58.0
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
....||.|.|||.+..+ +.|+++|+++ +.+.++.+.++
T Consensus 86 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d------------------------------------- 123 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYD------------------------------------- 123 (177)
T ss_dssp TTCEEEEEECCCSCCCH---HHHHHHHHHT--SCCSEEEECCC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC-------------------------------------
Confidence 34589999999998754 6799999886 34555555221
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCe
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDV 334 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DI 334 (701)
. ..+..+.|||+|.+..+|..|.+.+.... ...+.|+.|..+...
T Consensus 124 -------------~-------------~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~ 170 (177)
T 2f3j_A 124 -------------R-------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL 170 (177)
T ss_dssp -------------T-------------TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGG
T ss_pred -------------C-------------CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 0 02346899999999999999998766542 345677777654433
No 92
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.43 E-value=0.28 Score=41.08 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=26.5
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC----CCceEEeeC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN----PMLWVTEMA 328 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~----p~~~~v~~A 328 (701)
.+.|||+|.+..+|+.|.+.++... ...+.|+.|
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 3699999999999999998766542 345677776
No 93
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.39 E-value=0.29 Score=40.31 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=25.3
Q ss_pred eEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 297 VAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 297 ~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 45 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 45 YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 8999999999999999876654 23456666663
No 94
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=94.39 E-value=0.11 Score=43.42 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=30.1
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCe
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDV 334 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DI 334 (701)
.|.|||+|.+..+|..|.+.++... ...+.++.|-.+.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 4799999999999999998776543 345677777555543
No 95
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.36 E-value=0.21 Score=42.91 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=25.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCCC-------CceEEeeC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSENP-------MLWVTEMA 328 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~~p-------~~~~v~~A 328 (701)
+.|||+|.+..+|+.|.+.+....- ..+.|+.|
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 7999999999999999997664321 34667776
No 96
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=94.36 E-value=0.11 Score=46.83 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=53.4
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
..+||.|.|||.+..+ +.|+++|+++. .+.++.+.++
T Consensus 46 ~~~~l~V~nLp~~~te---~~L~~~F~~~G--~i~~v~i~~~-------------------------------------- 82 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSP---DTLRRVFEKYG--RVGDVYIPRD-------------------------------------- 82 (135)
T ss_dssp GCCCEEEECCCSSCHH---HHHHHHHGGGS--CCSEEECCCC--------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEEec--------------------------------------
Confidence 4579999999998754 77999998863 4545443211
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
....+..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 83 ------------------------~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 83 ------------------------RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp ------------------------SSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred ------------------------CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 0012456899999999999999998766543 234566665
No 97
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=94.33 E-value=0.068 Score=42.42 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.1
Q ss_pred cCCceEEEEeCCHHHHHHHHHH
Q 039780 293 KENAVAFVCFKTRYAAVVAAEI 314 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~ 314 (701)
+..|.|||+|++..+|..|.+.
T Consensus 39 ~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 39 KRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SSCCCEEEECSSSHHHHHHHTT
T ss_pred CcCCEEEEEECCHHHHHHHHHh
Confidence 4568999999999999999874
No 98
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.29 E-value=0.094 Score=44.72 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=27.9
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV 224 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~ 224 (701)
....++|.|.|||.+..+ +.|+++|+++ +.+.++.+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~ 49 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQ---ETLRSYFSQY--GEVVDCVIM 49 (105)
T ss_dssp SSSSSEECCBSCCTTCCH---HHHHHHHHTT--SCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 345689999999998754 7799999886 456666654
No 99
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.29 E-value=0.21 Score=42.75 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=26.9
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhc--cC--CCCceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILH--SE--NPMLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~--~~--~p~~~~v~~A 328 (701)
+..|.|||+|.+..+|..|.+.++ .. ....+.|+.|
T Consensus 50 ~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 50 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred CcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 456899999999999999998764 22 2345667666
No 100
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=94.23 E-value=0.21 Score=46.61 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=54.2
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|.++ |.+.++.+..+-
T Consensus 70 ~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~~~~------------------------------------ 108 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLDR------------------------------------ 108 (165)
T ss_dssp C-CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHhhcC--CCEEEEEEEecC------------------------------------
Confidence 45679999999997654 7799999987 456666654320
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..|.|||+|.+..+|..|.+.+.... ...+.|..|
T Consensus 109 --------------------------~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 109 --------------------------RTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp --------------------------TTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred --------------------------CCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 002335799999999999999998766542 234455554
No 101
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.14 E-value=0.2 Score=46.08 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=54.2
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...++|.|.|||.+..+ +.|+++|+.+. .+.++.+.+|
T Consensus 68 ~~~~~l~v~nl~~~~~~---~~l~~~F~~~G--~v~~~~i~~~------------------------------------- 105 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSP---DTLRRVFEKYG--RVGDVYIPRD------------------------------------- 105 (158)
T ss_dssp CBCCEEEEESCCTTCCH---HHHHHHHHHHS--CEEEEECCCC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEeec-------------------------------------
Confidence 34689999999998754 77999998873 4555444211
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
. ...+..|.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 106 -------------~------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 106 -------------R------------YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp -------------S------------SCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred -------------C------------CCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 0 012356899999999999999998766542 344566665
No 102
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.10 E-value=0.11 Score=45.17 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=25.3
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM 223 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i 223 (701)
..++|.|.|||.+..+ +.|+++|+.+ .+.++.+
T Consensus 15 ~~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i 47 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHL 47 (109)
T ss_dssp HHHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEE
Confidence 4579999999998764 7799999876 3455555
No 103
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.06 E-value=0.35 Score=41.42 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=26.4
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
.+.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 4799999999999999998776542 3345666664
No 104
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=94.00 E-value=0.31 Score=41.61 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=29.1
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCC-ceEEeeCCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE--NPM-LWVTEMAPE 330 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~-~~~v~~AP~ 330 (701)
+..|.|||+|.+..+|+.|.+.+... ... .+.|+.|-+
T Consensus 59 ~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 59 KTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp BSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 45689999999999999999976654 233 567777754
No 105
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=93.94 E-value=0.34 Score=41.08 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=25.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPE 330 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~ 330 (701)
+.|||+|.+..+|..|.+.++.. +...+.|+.|-.
T Consensus 46 ~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 46 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 38999999999999999876654 234566666643
No 106
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.91 E-value=0.2 Score=43.71 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=29.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeCCCCCCee
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMAPEPNDVL 335 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~AP~P~DIi 335 (701)
+.|||+|.+..+|..|.+.+... ....+.|+.|-...++.
T Consensus 63 g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 63 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 68999999999999999866432 33456777776555544
No 107
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=93.91 E-value=0.11 Score=43.89 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=50.8
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++ | +.++.+.++
T Consensus 17 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i~~~------------------------------------- 53 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPRE------------------------------------- 53 (100)
T ss_dssp ---CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEECSCC-------------------------------------
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEEEec-------------------------------------
Confidence 45689999999998764 5688899875 3 555554211
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
. ...++..|.|||+|.+..+|..|. .+.... ...+.|+.|-
T Consensus 54 ------------~------------~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 54 ------------P------------SNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp ------------T------------TTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred ------------C------------CcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 0 001345689999999999999999 555432 2345566653
No 108
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.88 E-value=0.12 Score=44.97 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=25.7
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCc-ceEEE
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSY-LSHHM 223 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v-~~v~i 223 (701)
...+||.|.|||.+..+ +.|+++|+++ +.+ .++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g~v~~~v~i 48 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITK---MDVLQFLEGI--PVDENAVHV 48 (114)
T ss_dssp SCCCEEEEESCCTTSCH---HHHHHHTTTS--CCCSTTEEE
T ss_pred CCccEEEEeCcCCcCCH---HHHHHHHHhC--CCcCCeEEE
Confidence 45689999999998764 6799999876 344 34444
No 109
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.88 E-value=0.2 Score=43.56 Aligned_cols=75 Identities=11% Similarity=0.253 Sum_probs=51.6
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP 265 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~ 265 (701)
.++|.|.|||.+..+ +.|+++|+++ +.+.++.+.+|-
T Consensus 27 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------- 63 (116)
T 1x4b_A 27 FRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVMRDP-------------------------------------- 63 (116)
T ss_dssp HTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEECCT--------------------------------------
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEECC--------------------------------------
Confidence 479999999998764 7799999876 355566553220
Q ss_pred hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780 266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA 328 (701)
Q Consensus 266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A 328 (701)
...+..|.|||+|.+..+|..|.+. ... ....+.|+.|
T Consensus 64 ------------------------~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 64 ------------------------ASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp ------------------------TTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred ------------------------CCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 0123468999999999999999875 222 2234566665
No 110
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=93.87 E-value=0.15 Score=44.83 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=52.7
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP 265 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~ 265 (701)
.+||.|.|||.+..+ +.|+++|+++ |.+.++.+.+|-
T Consensus 36 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------- 72 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTA---QDLEAHFSSC--GSINRITILCDK-------------------------------------- 72 (124)
T ss_dssp HTEEEEEEECTTCCH---HHHHHHHHTT--SCEEEEEEEEEC--------------------------------------
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecC--------------------------------------
Confidence 579999999998654 7799999976 456666654320
Q ss_pred hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
...+..|.|||+|.+..+|..|. .+... ....+.|+.|-
T Consensus 73 ------------------------~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 73 ------------------------FSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp ------------------------TTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred ------------------------CCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 00234589999999999999998 44433 23345676663
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=93.85 E-value=0.14 Score=46.32 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=52.8
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCC-CcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAP-SYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~-~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
...++|.|.|||.+..+ +.|+++|+++... .+.++.+++|-
T Consensus 42 ~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~d~----------------------------------- 83 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIYTR----------------------------------- 83 (136)
T ss_dssp CTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEECS-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEECC-----------------------------------
Confidence 34689999999998764 7799999886321 14455554320
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA 328 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A 328 (701)
. .+..|.|||+|++..+|..|.+ +... ......|..|
T Consensus 84 ---------------------------~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 84 ---------------------------E-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp ---------------------------S-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred ---------------------------C-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 0 2345899999999999999988 4433 2234556555
No 112
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.80 E-value=0.18 Score=42.96 Aligned_cols=43 Identities=23% Similarity=0.141 Sum_probs=28.8
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCeeec
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDVLWS 337 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~ 337 (701)
+..|.|||+|.+..+|+.|.+. .... .....|..| .+.++.|.
T Consensus 55 ~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~~ 99 (104)
T 1wg5_A 55 RSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRTS 99 (104)
T ss_dssp CBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCCS
T ss_pred CcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHHh
Confidence 4568999999999999999886 3322 223455555 34555443
No 113
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.79 E-value=0.1 Score=45.29 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=25.3
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM 223 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i 223 (701)
.+||.|.|||.+..+ +.|+++|+++ |.+.++.+
T Consensus 25 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i 57 (114)
T 2cq4_A 25 ARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRI 57 (114)
T ss_dssp HTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhC--CCEeEEEE
Confidence 479999999998754 6799999876 35555554
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.77 E-value=0.69 Score=38.58 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=28.9
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP 331 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P 331 (701)
..+.|||+|.+..+|+.|.+.+.... ...+.|+.|-.+
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 45799999999999999998776553 345777776443
No 115
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.28 Score=41.01 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=25.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 46 AFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp TEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 699999999999999998766543 234556555
No 116
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.29 Score=41.23 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=22.2
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKY 213 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 213 (701)
.+..+||.|.|||.+..+ +.|+++|+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~---~~l~~~f~~~ 51 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATE---ADLIPLFQNF 51 (101)
T ss_dssp CSSCCEEEEESCCTTCCH---HHHHHHHHTT
T ss_pred CCCCCEEEEcCCCcccCH---HHHHHHHHhC
Confidence 345689999999997754 6788888876
No 117
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=93.57 E-value=0.26 Score=42.91 Aligned_cols=36 Identities=17% Similarity=0.048 Sum_probs=27.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
..|.|||+|++..+|..|.+.+... +...+.|+.|.
T Consensus 66 ~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 66 FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3589999999999999999876544 23456677764
No 118
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=93.54 E-value=0.16 Score=45.29 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.5
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
+..|.|||+|.+. +|..|.+.+...
T Consensus 65 ~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 65 LNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp SBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CcceEEEEEECCH-HHHHHHHHhcCC
Confidence 4568999999999 999999887765
No 119
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=93.51 E-value=0.47 Score=39.90 Aligned_cols=35 Identities=23% Similarity=0.114 Sum_probs=26.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
..+.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 35799999999999999998765442 334666665
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=93.49 E-value=0.37 Score=41.42 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=25.7
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 3799999999999999998766542 334566665
No 121
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.47 E-value=0.34 Score=41.31 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=25.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeCC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMAP 329 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~AP 329 (701)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 379999999999999998865422 23345666664
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.38 E-value=0.16 Score=43.99 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=27.7
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A 328 (701)
+..|.|||+|.+..+|+.|.+.+... ....+.|+.|
T Consensus 61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a 98 (111)
T 2cpi_A 61 GPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLG 98 (111)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESC
T ss_pred CCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 35689999999999999999976654 2345667766
No 123
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=93.24 E-value=0.22 Score=42.75 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=22.4
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKY 213 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 213 (701)
..+.++|.|.|+|.+..+ +.|+++|+.+
T Consensus 8 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~ 35 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTM---EDVLNFFSDC 35 (107)
T ss_dssp CSSCCEEEEECCCSSCCS---HHHHHHTTTS
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHhc
Confidence 345689999999998764 6789999875
No 124
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.20 E-value=0.4 Score=40.97 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=26.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeCCC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMAPE 330 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~AP~ 330 (701)
+.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 53 g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 53 NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 57999999999999999876543 234566777653
No 125
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.06 E-value=0.13 Score=43.42 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=35.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeCCCCCCeee
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMAPEPNDVLW 336 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~AP~P~DIiW 336 (701)
|.|||+|.++.+|+.|.+.++...- ..++++.|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 8999999999999999988777653 5688999999999863
No 126
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=92.97 E-value=0.66 Score=38.90 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=25.6
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
.|.|||+|++..+|..|.+.+.... ...+.++.|
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 57 NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3789999999999999998766542 344566665
No 127
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=92.92 E-value=0.18 Score=45.05 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=22.3
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKY 213 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 213 (701)
...++|.|.|||.+..+ +.|+++|+++
T Consensus 40 ~~~~~lfVgnLp~~~te---~dL~~~F~~~ 66 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTK---EEIVQFFSGL 66 (126)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcC
Confidence 34689999999998764 7799999876
No 128
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.87 E-value=0.7 Score=42.00 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=54.1
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...+||.|.|||.+..+ +.|+++|+++. .+.++.+.+
T Consensus 71 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~G--~i~~v~i~~-------------------------------------- 107 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNK---TELERAFGYYG--PLRSVWVAR-------------------------------------- 107 (150)
T ss_dssp TTSCEEEEESCCSCCSC---HHHHHHHHHHS--CEEEEEECS--------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhC--CEEEEEEee--------------------------------------
Confidence 45689999999998764 67899998863 444444310
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
+ ..|.|||+|.+..+|..|.+.++... ...+.|+.|-.
T Consensus 108 ------------~-----------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 108 ------------N-----------------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp ------------S-----------------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred ------------C-----------------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 0 24799999999999999998766543 34566777643
No 129
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=92.78 E-value=0.42 Score=45.98 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=54.4
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
..++|.|.|||.+..+ +.|+++|+++ |.+.++.+.++.
T Consensus 124 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~------------------------------------- 161 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSD---DDIKSVFEAF--GKIKSATLARDP------------------------------------- 161 (216)
T ss_dssp TSCEEEEECCCTTCCH---HHHHHHHTTS--SCEEEEEEEECT-------------------------------------
T ss_pred CCcEEEEeCCCCcCCH---HHHHHHHhcc--CCeeEEEEEecC-------------------------------------
Confidence 4579999999998653 7799999876 456666654320
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..+.|||+|++..+|..|.+.++... ...+.|+.|
T Consensus 162 -------------------------~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 162 -------------------------TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp -------------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred -------------------------CCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 002345799999999999999999876543 234556554
No 130
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=92.74 E-value=0.28 Score=48.27 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=30.7
Q ss_pred CcceeEEEeCCCC-CChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780 184 PSHFTVLVRAVPW-SAEQSYSESVKEFFMKYYAPSYLSHHMVHRS 227 (701)
Q Consensus 184 ~s~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~ 227 (701)
+..+||.|.|||. +..+ +.|+++|+++ |.+.++.+.++-
T Consensus 32 ~~~~~l~V~nLp~~~~te---~~L~~~F~~~--G~i~~v~i~~~~ 71 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKILFNK 71 (229)
T ss_dssp CCCSEEEEESCCTTTCCH---HHHHHHHHHH--TCEEEEEECCTT
T ss_pred CCCCEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEEEEECC
Confidence 4568999999998 7654 7799999987 457788877654
No 131
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=92.60 E-value=0.38 Score=41.81 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
+.|||+|.+..+|+.|.+.+...
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 89999999999999999977654
No 132
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=92.46 E-value=0.2 Score=46.17 Aligned_cols=33 Identities=15% Similarity=0.542 Sum_probs=25.0
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM 223 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i 223 (701)
++||.|.|||.+..+ +.|+++|+++ |.+.++.+
T Consensus 3 ~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i 35 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTE---DNLREYFGKY--GTVTDLKI 35 (167)
T ss_dssp GGEEEECSCCTTCCH---HHHHHHHTTT--CCEEEEEC
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEE
Confidence 579999999998764 7799999876 34555543
No 133
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=92.37 E-value=0.1 Score=48.67 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=28.8
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
.+..|.|||+|.+..+|..|.+.++... ...+.++.|
T Consensus 133 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 133 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 4567999999999999999999776542 344667776
No 134
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=92.25 E-value=0.35 Score=45.75 Aligned_cols=37 Identities=8% Similarity=0.250 Sum_probs=28.2
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV 224 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~ 224 (701)
....+||.|.|||.+..+ +.|+++|+++ |.+.++.+.
T Consensus 10 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~ 46 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTD---ESLRSHFEQW--GTLTDCVVM 46 (196)
T ss_dssp CGGGGEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEE
Confidence 345789999999998754 7799999987 456666654
No 135
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=92.18 E-value=0.27 Score=46.85 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=29.3
Q ss_pred cceeEEEeCCCC-CChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780 185 SHFTVLVRAVPW-SAEQSYSESVKEFFMKYYAPSYLSHHMVHRS 227 (701)
Q Consensus 185 s~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~ 227 (701)
+++||.|.|||. +..+ +.|+++|+++ |.+.++.+.++-
T Consensus 2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~--G~i~~v~i~~~~ 40 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKILFNK 40 (198)
T ss_dssp CCCEEEEECCCSSSCCH---HHHHHHHHTT--CCCSEEECSTTC
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEEEeCC
Confidence 468999999999 7654 7799999987 457777776553
No 136
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=91.91 E-value=0.35 Score=47.84 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=53.9
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
..+||.|.|||.+..+ +.|+++|+++....+.++.+.+|-
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d~------------------------------------- 106 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENR------------------------------------- 106 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEECT-------------------------------------
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEecC-------------------------------------
Confidence 4579999999998764 779999987632256666665430
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..+.|||+|.+..+|+.|.+.+.... -..+.|+.|
T Consensus 107 -------------------------~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 107 -------------------------ANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -------------------------TTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred -------------------------CCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 002335799999999999999988665443 234566665
No 137
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.89 E-value=0.84 Score=37.78 Aligned_cols=33 Identities=9% Similarity=-0.118 Sum_probs=23.8
Q ss_pred eEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 297 VAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 297 ~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
.|||+|.+..+|..|.+ +.... ...+.|+.|.+
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 99999999999999998 55432 23345555543
No 138
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=91.89 E-value=0.46 Score=43.85 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=53.5
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...++|.|.|+|.+..+ +.|+++|+++ |.+.++.+.++-
T Consensus 92 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~------------------------------------ 130 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKDS------------------------------------ 130 (172)
T ss_dssp TTTTCEEEECCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCceEEEEEecC------------------------------------
Confidence 34689999999997654 7799999876 455555553320
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
..++..|.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 131 --------------------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 131 --------------------------ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp --------------------------TTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred --------------------------CCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 002345799999999999999998776543 233445444
No 139
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=91.74 E-value=0.42 Score=45.94 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=53.0
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA 264 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~ 264 (701)
..+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++.
T Consensus 27 ~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~------------------------------------- 64 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGE---DTIRQAFAPF--GPIKSIDMSWDS------------------------------------- 64 (216)
T ss_dssp HHTEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEECCC--------------------------------------
T ss_pred cCCEEEEECCCCCCCH---HHHHHHHHhC--CCEEEEEEeecC-------------------------------------
Confidence 3579999999998764 7799999887 355555542210
Q ss_pred chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeC
Q 039780 265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMA 328 (701)
Q Consensus 265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~A 328 (701)
...+..+.|||+|.+..+|..|.+.+....- ..+.+..+
T Consensus 65 -------------------------~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 65 -------------------------VTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp -------------------------CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred -------------------------CCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 0124568999999999999999987665432 33445443
No 140
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.70 E-value=0.22 Score=43.93 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=25.2
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
+..|.|||+|.+..+|..|.+ +.... ...+.|..|
T Consensus 65 ~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 65 KATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp SEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 446899999999999999998 54432 234555555
No 141
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=91.61 E-value=0.92 Score=45.45 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=37.5
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCeeecccCCch
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDVLWSNLSIPY 343 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~Nl~~~~ 343 (701)
.|.|||+|.+..+|..|.+.+.... ...+.+..|....-|+=.||....
T Consensus 58 kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~ 108 (261)
T 3sde_A 58 RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVV 108 (261)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCC
Confidence 3799999999999999998766542 345678888777777777777643
No 142
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=91.51 E-value=0.47 Score=43.51 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=25.8
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A 328 (701)
+..|.|||+|.+..+|..|.+ +... ....+.|+.|
T Consensus 127 ~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 127 QSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp TTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred ccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 456899999999999999988 3322 2345667776
No 143
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=91.12 E-value=1.2 Score=36.91 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=26.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
.|.|||+|.++.+|..|.+.+...+ .....|..|
T Consensus 43 kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 43 QGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 5899999999999999999876543 234566666
No 144
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=90.96 E-value=0.84 Score=46.10 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=38.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCCCCeeecccCCch
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEPNDVLWSNLSIPY 343 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P~DIiW~Nl~~~~ 343 (701)
.|.|||+|.+..+|..|.+.+... ....+.++.+|...-|+=.||....
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~ 107 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSL 107 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcC
Confidence 479999999999999999876654 2345677888887778888887654
No 145
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=90.62 E-value=0.43 Score=48.58 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=29.6
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRS 227 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~ 227 (701)
.+.+||.|.|||.+..+ +.|+++|+++ |.+.++.+.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 77 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQ---NKVYKYFKHC--GPIIHVDVADSL 77 (292)
T ss_dssp ---CEEEEEEECTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 45689999999998764 7799999987 467888887753
No 146
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=90.25 E-value=0.47 Score=45.50 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=26.8
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH 225 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~ 225 (701)
.+||.|.|+|.+.. .+.|+++|+++ |.+.++.+.+
T Consensus 109 ~~~l~V~nLp~~~t---~~~L~~~F~~~--G~v~~v~i~~ 143 (193)
T 2voo_A 109 NRSVYIKGFPTDAT---LDDIKEWLEDK--GQVLNIQMRR 143 (193)
T ss_dssp HTEEEEECCCTTCC---HHHHHHHHTTS--CCEEEEEEEE
T ss_pred cCEEEecCCCCcCC---HHHHHHHHhcC--CCEEEEEEEE
Confidence 47999999999765 37799999986 4566666643
No 147
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=90.11 E-value=0.83 Score=49.75 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=55.7
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP 265 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~ 265 (701)
..||.|.|||.+..+ +.|+++|..+ |.|.++.|+.|-
T Consensus 102 ~~~lfV~nL~~~~te---~~L~~~F~~~--G~I~~v~i~~d~-------------------------------------- 138 (437)
T 3pgw_S 102 FKTLFVARVNYDTTE---SKLRREFEVY--GPIKRIHMVYSK-------------------------------------- 138 (437)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEeeccC--------------------------------------
Confidence 479999999998754 7799999986 456566553220
Q ss_pred hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
...+..|.|||+|.+..+|..|.+.+.... ...+.|..|-.
T Consensus 139 ------------------------~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 139 ------------------------RSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred ------------------------CCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 012346899999999999999998876553 23456776643
No 148
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=89.91 E-value=1.1 Score=42.12 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=54.5
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...++|.|.|+|.+..+ +.|+++|+++ |.+.++.+.++.
T Consensus 112 ~~~~~l~v~nl~~~~~~---~~l~~~f~~~--G~v~~~~~~~~~------------------------------------ 150 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKDS------------------------------------ 150 (198)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTB--SCEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHc--CCccEEEEeecC------------------------------------
Confidence 34589999999997653 6799999876 355555553220
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
...+..|.|||+|.+..+|..|.+.++... ...+.++.|
T Consensus 151 --------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 151 --------------------------ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp --------------------------TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred --------------------------CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 012345799999999999999998766543 334566666
No 149
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=89.81 E-value=1.6 Score=44.06 Aligned_cols=39 Identities=10% Similarity=-0.013 Sum_probs=29.5
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
++..|.|||+|.+..+|..|.+.+.... ...+.+..|..
T Consensus 223 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 223 GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 3457899999999999999999776653 33466777643
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=89.41 E-value=0.98 Score=42.53 Aligned_cols=36 Identities=11% Similarity=0.277 Sum_probs=26.7
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV 224 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~ 224 (701)
...++|.|.|||.+..+ +.|+++|+.+ |.+.++.+.
T Consensus 102 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~ 137 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIM 137 (196)
T ss_dssp -CCSEEEEECCTTTCCH---HHHHHHHTTT--SCEEEEEEE
T ss_pred CCcceEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEe
Confidence 34589999999998654 7799999876 456666654
No 151
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=89.09 E-value=1.3 Score=42.71 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=26.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
|.|||+|.+..+|+.|.+.+.... ...+.|..|-.
T Consensus 43 g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 43 GAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 789999999999999999877553 23455666643
No 152
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=88.68 E-value=1.6 Score=43.28 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCCC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSENP 320 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~~p 320 (701)
|.|||+|.+..+|..|.+.+....-
T Consensus 180 G~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 180 NCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 7999999999999999987765443
No 153
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=88.12 E-value=2 Score=43.27 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=29.7
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPND 333 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~D 333 (701)
..|.|||+|.+..+|..|.+.++... ...+.|+.|-...|
T Consensus 51 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 51 MRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 92 (282)
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence 45899999999999999998776543 34566777754444
No 154
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=85.48 E-value=2.6 Score=42.39 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=24.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCCC---CceEEeeC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSENP---MLWVTEMA 328 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~~p---~~~~v~~A 328 (701)
|.|||+|.+..+|..|.+.++...- ..+.|+.|
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 6999999999999999998776432 23445443
No 155
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=85.00 E-value=3.9 Score=37.33 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=21.3
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKY 213 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 213 (701)
.++||.|.|||.+..+ +.|+++|+++
T Consensus 3 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 28 (172)
T 2g4b_A 3 SARRLYVGNIPFGITE---EAMMDFFNAQ 28 (172)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred cccEEEEcCCCcccCH---HHHHHHHHHH
Confidence 3589999999998764 7788888876
No 156
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=84.98 E-value=2.7 Score=41.95 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=52.9
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP 265 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~ 265 (701)
..+|.|.|+|.+..+ +.|+++|+.+ |.+.++.+.+| +
T Consensus 96 ~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~----------------------------~---------- 132 (261)
T 3sde_A 96 GAALTVKNLSPVVSN---ELLEQAFSQF--GPVEKAVVVVD----------------------------D---------- 132 (261)
T ss_dssp SSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEE----------------------------T----------
T ss_pred CCcccccCCCCCCCH---HHHHHHHHhc--CCeEEEEeeeC----------------------------C----------
Confidence 569999999987653 7799999876 35666655332 0
Q ss_pred hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC------CCCceEEeeC
Q 039780 266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE------NPMLWVTEMA 328 (701)
Q Consensus 266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~------~p~~~~v~~A 328 (701)
.++..|.|||+|.+..+|..|.+.+.+. .+....+.+|
T Consensus 133 -------------------------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 133 -------------------------RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp -------------------------TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred -------------------------CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 0234589999999999999999887432 2344556554
No 157
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.80 E-value=1.3 Score=37.50 Aligned_cols=37 Identities=22% Similarity=-0.016 Sum_probs=28.3
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCCCCceEEeeCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAP 329 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~~v~~AP 329 (701)
+..|.|||+|.+..+|..|.+.........+.|+.|-
T Consensus 52 ~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 52 KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 4578999999999999999987554444556677763
No 158
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.79 E-value=1.7 Score=37.33 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=34.3
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCCCCeeecc
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEPNDVLWSN 338 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P~DIiW~N 338 (701)
+..|.|||+|.+..+|+.|.+.+... ....+.++.|.+..|.-++.
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 35799999999999999999887654 33456778876666654443
No 159
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=84.24 E-value=1.6 Score=44.24 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=27.7
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
..++|.|.|+|.+..+ +.|+++|+.+. ..+.++.+.++
T Consensus 116 ~~~~l~v~nlp~~~t~---~~l~~~f~~~G-~~i~~v~i~~~ 153 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQ---RNIRDLLQDIN-VVALSIRLPSL 153 (292)
T ss_dssp CSCEEEEECCCTTCCH---HHHHHHHHHTT-CCCCEEECC--
T ss_pred CCCEEEEECCCCCCCH---HHHHHHHHHhC-CCeEEEEEEeC
Confidence 4689999999998754 67999999863 15667776554
No 160
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=82.90 E-value=0.96 Score=38.61 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=28.5
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
+..|.|||+|.+..+|+.|.+.++... .....++.+|
T Consensus 66 ~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 66 HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred CccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 457999999999999999999877653 3345566665
No 161
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=82.09 E-value=3 Score=40.11 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=21.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
.|.|||.|.+..+|..|.+.++..
T Consensus 165 ~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 165 SSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp SEEEEEECSSHHHHHHHHHHHTTC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCC
Confidence 489999999999999999987764
No 162
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=80.86 E-value=1.5 Score=38.17 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=28.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
..|.|||+|.+..+|..|.+.+.... ...+.++.+|
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 46999999999999999999887653 3345566654
No 163
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.56 E-value=1.4 Score=38.05 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=21.1
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhc
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILH 316 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~ 316 (701)
+..|.|||+|.+..+|+.|.+.++
T Consensus 50 ~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 50 PPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CcccEEEEEECCHHHHHHHHHhhh
Confidence 456899999999999999998764
No 164
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.11 E-value=2.4 Score=34.72 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=30.4
Q ss_pred CCCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 182 PNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 182 ~~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
.....+||.|.|||.+..+ +.|+++|+++ +.+.++.+.++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~v~~~~~ 45 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTN---QELRAKFEEY--GPVIECDIVKD 45 (92)
T ss_dssp CCCSSEEEEEESCCSSCCH---HHHHHHHHTT--SCCCEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEECC
Confidence 3455689999999998754 7799999986 45677776544
No 165
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.87 E-value=2.2 Score=36.56 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=30.4
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH 225 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~ 225 (701)
.+...+|.|.|||.+..+ +.|+++|+++ |.+.++.+.+
T Consensus 13 ~~~~~~LfV~nLp~~vte---~dL~~lF~~f--G~V~~v~i~~ 50 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLK 50 (105)
T ss_dssp CCCCCEEEECSCCTTSCH---HHHHHHHHHH--CCEEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEc
Confidence 355689999999998764 7799999987 5788888764
No 166
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.84 E-value=2.1 Score=37.80 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=34.0
Q ss_pred HHHHHhCCCCCCcceeEEEeCCCCCChhhhHHHHHHHHhhhCC--CCcceEEEEec
Q 039780 173 RLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYA--PSYLSHHMVHR 226 (701)
Q Consensus 173 R~~~l~~~~~~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~--~~v~~v~i~~~ 226 (701)
+++++.. ...++|.|.|||.+..+ +.|+++|+++.+ +.+.++.+++|
T Consensus 14 ~~~~~~~----~~~~~v~V~nLp~~~te---~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 14 VAQFLSK----ENQVIVRMRGLPFTATA---EEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp HHHHHHC----CSCCEEEECSCCTTCCH---HHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred HHhhccC----CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCccCCcceEEEEEC
Confidence 3455542 34689999999998764 789999998754 34567887654
No 167
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.12 E-value=2.6 Score=33.70 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=29.3
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH 225 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~ 225 (701)
.+..+||.|.|||.+..+ +.|+++|+++ |.+.++.+.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~---~~l~~~f~~~--G~i~~~~~~~ 46 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITE---TDLRNHFYQF--GEIRTITVVQ 46 (85)
T ss_dssp CSSCCCEEEECCTTTSCH---HHHHHHHHTT--SCEEEEEEEG
T ss_pred CCCccEEEEcCCCCCCCH---HHHHHHHHhC--CCEeEEEEEC
Confidence 355689999999998654 7799999987 4577777653
No 168
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=78.89 E-value=1.8 Score=37.02 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=29.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
..|.|||+|.+..+|..|.+.++... ...+.++.|++
T Consensus 55 ~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 55 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred CcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 46899999999999999999887653 34566777763
No 169
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=77.92 E-value=2.5 Score=35.31 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=30.1
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
....+||.|.|||.+..+ +.|+++|+.+ |.+.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDE---TEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEEC
Confidence 345689999999998754 7799999987 46777777554
No 170
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=77.85 E-value=3.6 Score=34.21 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=27.4
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
.+..|.|||+|.+..+|+.|.+ +.... ...+.|+.|
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 55 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 3457899999999999999998 66543 345667666
No 171
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=77.62 E-value=1.7 Score=35.71 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=28.5
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH 225 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~ 225 (701)
.++..||.|.|+|.+..+ +.|+++|+++ |.+.++.+.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te---~~L~~~F~~~--G~i~~v~i~~ 45 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTA---EELQQFFCQY--GEVVDVFIPK 45 (89)
T ss_dssp ---CCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEEee
Confidence 456789999999998764 7899999987 5677777653
No 172
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.56 E-value=2.7 Score=35.01 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=27.4
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A 328 (701)
+..+.|||+|.+..+|+.|.+.++.. +...+.|+.|
T Consensus 51 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 51 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 45689999999999999999876643 2344666666
No 173
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.95 E-value=3.8 Score=34.95 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=28.4
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
.+..+.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 64 g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 64 GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4567899999999999999998776543 344666666
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.60 E-value=2 Score=34.89 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=27.7
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV 224 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~ 224 (701)
..+||.|.|||.+..+ +.|+++|+++ +.+.++.+.
T Consensus 4 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~ 38 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTE---DELREFFSQY--GDVMDVFIP 38 (88)
T ss_dssp CCCEEEEESCCSSSCH---HHHHHHSTTT--SCCCEEECC
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEEe
Confidence 4589999999998764 7799999987 456777764
No 175
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=76.26 E-value=2.3 Score=36.21 Aligned_cols=37 Identities=24% Similarity=0.145 Sum_probs=27.5
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP 331 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P 331 (701)
.+.|||+|.+..+|+.|.+.+.... ...+.|+.|-.|
T Consensus 62 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 62 KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4799999999999999998766542 344567776433
No 176
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=75.94 E-value=2.3 Score=36.26 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=28.5
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
+..|.|||+|++..+|..|.+.++... .....++.+|
T Consensus 57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 57 PGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 356899999999999999999887653 3345566655
No 177
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.33 E-value=3.4 Score=36.18 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=29.7
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH 225 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~ 225 (701)
+...+|.|.|||.+..+ +.|+++|+++ |.+.++.+.+
T Consensus 29 ~ps~~LfVgNLp~~vte---~dL~~lF~~f--G~V~~v~i~~ 65 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLK 65 (119)
T ss_dssp SCCSEEEEESCCTTCCH---HHHHHHHTTT--SCCCEEEEEG
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEeC
Confidence 44689999999998754 7799999987 5678888764
No 178
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.07 E-value=3.5 Score=34.12 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=27.6
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
+..+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 34679999999999999999876544 23456677663
No 179
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=74.07 E-value=2.2 Score=33.96 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=21.9
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
+..|.|||+|.+..+|+.|.+.+...
T Consensus 45 ~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 45 KTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp BCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred cEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 45689999999999999999866554
No 180
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=73.48 E-value=3.2 Score=34.13 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=27.9
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
+..|.|||+|.+..+|..|.+.+... ....+.++.|.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 51 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 34589999999999999999876643 23456677763
No 181
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.14 E-value=2.9 Score=34.22 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=26.9
Q ss_pred CceEEEEeCCHHHHHHHHHHhcc-C--CCCceEEeeCC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHS-E--NPMLWVTEMAP 329 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~-~--~p~~~~v~~AP 329 (701)
.+.|||+|.+..+|..|.+.++. . ....+.|+.|-
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 47999999999999999987766 3 33456676663
No 182
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=71.28 E-value=4.5 Score=35.01 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=30.0
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCC-CcceEEEEec
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAP-SYLSHHMVHR 226 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~-~v~~v~i~~~ 226 (701)
...+||.|.|||.+..+ +.|+++|+++.+. .+.++.+++|
T Consensus 15 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~~ 55 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIYT 55 (118)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEEC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEEC
Confidence 34689999999998764 7799999986421 2677887654
No 183
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=68.99 E-value=6.8 Score=36.37 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=28.7
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCCC----CceEEeeCC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSENP----MLWVTEMAP 329 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~p----~~~~v~~AP 329 (701)
.+.|||+|.+..+|..|.+.+....- ..++|+.|-
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 47899999999999999998877653 457788774
No 184
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.74 E-value=5 Score=33.75 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=28.4
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
...++|.|.|||.+..+ +.|+++|+++. ++++.+++|
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G---~~~v~i~~d 49 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATE---NDIYNFFSPLN---PMRVHIEIG 49 (102)
T ss_dssp SSSCEEEEESCCTTCCH---HHHHHSSCSCC---CSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHcC---ceEEEEEEC
Confidence 45689999999998764 77999999864 347777654
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=68.43 E-value=7.2 Score=33.93 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=28.0
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
+..|.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 456899999999999999998766543 3456666663
No 186
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.42 E-value=4.8 Score=32.08 Aligned_cols=22 Identities=50% Similarity=0.510 Sum_probs=19.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHh
Q 039780 294 ENAVAFVCFKTRYAAVVAAEIL 315 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~ 315 (701)
..+.|||+|.+..+|..|.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHh
Confidence 3589999999999999999866
No 187
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.37 E-value=7.2 Score=31.69 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=25.9
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA 328 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A 328 (701)
.+.|||+|++..+|..|.+.+... ....+.|+.|
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 459999999999999999876543 2345667766
No 188
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=65.09 E-value=10 Score=33.38 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=29.4
Q ss_pred c-eEEEEeCCHHHHHHHHHHhccCCC----CceEEeeCCCCC
Q 039780 296 A-VAFVCFKTRYAAVVAAEILHSENP----MLWVTEMAPEPN 332 (701)
Q Consensus 296 ~-~aFVtF~s~~~A~~a~q~~~~~~p----~~~~v~~AP~P~ 332 (701)
| .|||+|.+..+|..|.+.++...- ..+.|+.|-.++
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 6 599999999999999998887653 357788885444
No 189
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=64.75 E-value=6 Score=31.34 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=26.5
Q ss_pred eeEEEeCCCCCChhh---hHHHHHHHHhhhCCCCcceEEEE
Q 039780 187 FTVLVRAVPWSAEQS---YSESVKEFFMKYYAPSYLSHHMV 224 (701)
Q Consensus 187 ~TVlV~~IP~~~~~~---~~~~l~~~F~~~~~~~v~~v~i~ 224 (701)
+||.|.|||.+..+. ..+.|+++|+++ |.+.++.+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~ 40 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP 40 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEec
Confidence 689999999876431 357899999986 456666654
No 190
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.35 E-value=2.8 Score=33.99 Aligned_cols=36 Identities=19% Similarity=-0.047 Sum_probs=23.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCCCCceEEeeCC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAP 329 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~~v~~AP 329 (701)
..+.|||+|++..+|+.+.+.-..-+...+.+..|.
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAE 76 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecC
Confidence 568999999999999754332111133455566654
No 191
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=62.97 E-value=5.1 Score=34.92 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=56.9
Q ss_pred cceeEEEeCCCC--CChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780 185 SHFTVLVRAVPW--SAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC 262 (701)
Q Consensus 185 s~~TVlV~~IP~--~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~ 262 (701)
.+++|.++|+-. +..+.+.+.|++.|+++ |.|.++.|.++. +.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~---------------------------~~------ 63 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEK---------------------------QG------ 63 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEE---------------------------ES------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecC---------------------------CC------
Confidence 357899999843 44445677888888876 467777775431 00
Q ss_pred CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
. ....+..|.|||+|.+..+|..|.+.+.... ...+.++.+|+
T Consensus 64 -------------~------------~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 64 -------------E------------EEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp -------------S------------STTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred -------------c------------ccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 0 0002335899999999999999999887653 33455666654
No 192
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.63 E-value=9.8 Score=31.87 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=37.1
Q ss_pred CCcceeEEEeCCCCCCh-hhhHHHHHHHHhhhCCCCcceEE-----EEecchhHHHHHHHHHHHHHHhcc
Q 039780 183 NPSHFTVLVRAVPWSAE-QSYSESVKEFFMKYYAPSYLSHH-----MVHRSSRVQRLMNDAEKICRVFKG 246 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~-~~~~~~l~~~F~~~~~~~v~~v~-----i~~~~~~L~~L~~~~e~~~~~lk~ 246 (701)
.|++-++.|.|+|.+.+ +.+++.|++.|+++. |.|+++. |.++. .+..+++++++.+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG-G~Vl~VtgG~AfV~F~~------~esA~~A~~~l~G 68 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG-GKVLSITGCSAILRFIN------QDSAERAQKRMEN 68 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT-CCEEECCTTCEEEEESS------HHHHHHHHHHHTT
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC-CeeEEEecCEEEEEECC------HHHHHHHHHHhcC
Confidence 34543488999999765 456778999999873 4666652 44432 3455677777743
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=61.91 E-value=8.4 Score=34.59 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=27.2
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
+..|.|||+|.+..+|..|.+.+.... ...+.++.|.
T Consensus 42 ~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 42 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 455899999999999999998766542 2345566654
No 194
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=60.85 E-value=10 Score=30.15 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=21.6
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKY 213 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 213 (701)
..+||.|.|||.+..+ +.|+++|+++
T Consensus 5 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 30 (87)
T 2hzc_A 5 SARRLYVGNIPFGITE---EAMMDFFNAQ 30 (87)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHH
Confidence 4689999999998754 6788999887
No 195
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=60.67 E-value=12 Score=31.52 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=26.5
Q ss_pred cceeEEEeCCCCC-ChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780 185 SHFTVLVRAVPWS-AEQSYSESVKEFFMKYYAPSYLSHHM 223 (701)
Q Consensus 185 s~~TVlV~~IP~~-~~~~~~~~l~~~F~~~~~~~v~~v~i 223 (701)
..+||.|.|||.+ ..+ +.|+++|+++. .+.++.+
T Consensus 26 ~~~~l~V~nl~~~~~t~---~~l~~~F~~~G--~v~~v~i 60 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKK---SDVETIFSKYG--RVAGCSV 60 (110)
T ss_dssp CSSEEEECSCCCSSCCH---HHHHHHHGGGS--CCSEEEE
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhCC--CeEEEEE
Confidence 3479999999998 654 77999999874 5666655
No 196
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=60.24 E-value=6.3 Score=35.12 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=27.5
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
.+..|.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 89 g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 89 GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3456899999999999999998766542 234556665
No 197
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=59.92 E-value=9.5 Score=34.36 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=33.8
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC------CCCCeeecccCCc
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP------EPNDVLWSNLSIP 342 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP------~P~DIiW~Nl~~~ 342 (701)
.+..|.|||+|.+..+|..|.+.+.... ...+.++.|. ...-|+-.||...
T Consensus 42 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~ 100 (168)
T 1b7f_A 42 GYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRT 100 (168)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTT
T ss_pred CccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCC
Confidence 3456899999999999999998765542 2345555553 2334556666543
No 198
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.27 E-value=6.7 Score=34.01 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
|.|||+|.+..+|..|.+.+..+
T Consensus 64 gfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 64 PYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999987765
No 199
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.31 E-value=8.4 Score=33.62 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=25.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhcc----CCCCceEEeeC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHS----ENPMLWVTEMA 328 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~----~~p~~~~v~~A 328 (701)
.|.|||+|++..+|..|.+.+.. -....+.|+.|
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 48999999999999999886542 12345666666
No 200
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=56.81 E-value=5.4 Score=35.87 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=27.0
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH 225 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~ 225 (701)
...++|.|.|||.+..+ +.|+++|+++. ++++.+++
T Consensus 44 ~~~~~lfV~nLp~~~te---~dL~~~F~~~G---i~~v~i~~ 79 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATE---NDIYNFFSPLN---PVRVHIEI 79 (139)
T ss_dssp -CCCCEECCSCCTTCCH---HHHHHHHCSCC---CSEEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC---CeEEEEEE
Confidence 34689999999998764 78999999863 44666644
No 201
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.49 E-value=9.2 Score=32.60 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=24.8
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMA 328 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~A 328 (701)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 589999999999999999865432 2234455555
No 202
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=56.47 E-value=6.2 Score=32.16 Aligned_cols=35 Identities=20% Similarity=-0.039 Sum_probs=21.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCCCCceEEeeC
Q 039780 294 ENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMA 328 (701)
Q Consensus 294 ~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~~v~~A 328 (701)
..|.|||+|++..+|..+...-..-+.....+..|
T Consensus 47 srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNA 81 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEEC
T ss_pred CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEc
Confidence 57899999999999884322211112344555555
No 203
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=56.16 E-value=9.8 Score=33.80 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=28.0
Q ss_pred eEEEEeCCHHHHHHHHHHhccCCC----CceEEeeCCCC
Q 039780 297 VAFVCFKTRYAAVVAAEILHSENP----MLWVTEMAPEP 331 (701)
Q Consensus 297 ~aFVtF~s~~~A~~a~q~~~~~~p----~~~~v~~AP~P 331 (701)
.|||+|.+..+|..|.+.+....- ..++++.|...
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 499999999999999999887643 44678887543
No 204
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.36 E-value=7.2 Score=32.74 Aligned_cols=23 Identities=30% Similarity=0.141 Sum_probs=19.7
Q ss_pred ccCCceEEEEeCCHHHHHHHHHH
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEI 314 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~ 314 (701)
.+..+.|||+|.+..+|+.|.+.
T Consensus 52 g~~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 52 GRVTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp SCEEEEEEEECSSSHHHHHHHTT
T ss_pred CCEeeEEEEEECCHHHHHHHHHh
Confidence 45678999999999999999863
No 205
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=54.89 E-value=17 Score=32.40 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=55.2
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...++|.|.|+|.+..+ +.|+++|+++ |.+.++.+.++. ..
T Consensus 85 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~~---------------------------~~------- 125 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWDM---------------------------QT------- 125 (166)
T ss_dssp TTCEEEEEESCCTTCCH---HHHHHHHTTS--TTEEEEEEEECT---------------------------TT-------
T ss_pred CCCceEEECCCCCCCCH---HHHHHHHhcc--CCeeEEEEEecC---------------------------CC-------
Confidence 45689999999998754 7799999876 467777775541 00
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMA 328 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~A 328 (701)
.+..|.|||+|++..+|..|.+.++...- ..+.++.|
T Consensus 126 ----------------------------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 126 ----------------------------GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp ----------------------------CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ----------------------------CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 12347999999999999999987765532 23445444
No 206
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.24 E-value=14 Score=31.42 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=26.3
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhh---hCCCCcceEE
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMK---YYAPSYLSHH 222 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~---~~~~~v~~v~ 222 (701)
...+|.|+|+|++..+ +.|+-||++ ...|.+.++.
T Consensus 7 ~~~~I~V~~lPp~~~~---e~L~LYFEn~rrsGGG~V~~v~ 44 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPD---ELLTLYFENRRRSGGGPVLSWQ 44 (104)
T ss_dssp CCCEEEEESCCTTSCH---HHHHHHHHCTTTTCCCCEEEEE
T ss_pred CccEEEEECCCCCCCh---hHheEEEeCCCcCCCceeeEEE
Confidence 3469999999997754 789999998 3455666554
No 207
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=53.05 E-value=18 Score=32.71 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=51.4
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG 263 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~ 263 (701)
...++|.|.|+|.+..+ +.|+++|+++ |.+.++.+.++ +.
T Consensus 93 ~~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~~~----------------------------~~------- 132 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTE---NDIRVMFSSF--GQIEECRILRG----------------------------PD------- 132 (175)
T ss_dssp GGGSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC----------------------------TT-------
T ss_pred CCCCeEEEcCCCCcCCH---HHHHHHHHhC--CCEEEEEEEEC----------------------------CC-------
Confidence 35689999999998654 7799999987 45777777543 00
Q ss_pred cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC
Q 039780 264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN 319 (701)
Q Consensus 264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~ 319 (701)
++..|.|||+|.+..+|..|.+.++...
T Consensus 133 ----------------------------g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 133 ----------------------------GLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp ----------------------------SCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred ----------------------------CCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 0124789999999999999998877643
No 208
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=52.82 E-value=8.7 Score=30.58 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.3
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
+..+.|||+|++..+|..|. .+...
T Consensus 51 ~~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 34799999999999999998 55443
No 209
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=49.19 E-value=22 Score=30.02 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=29.3
Q ss_pred cceeEEEeCCCC--CChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 185 SHFTVLVRAVPW--SAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 185 s~~TVlV~~IP~--~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
.+++|.++|+.. +..+...+.|++.|+++ |.+.++.+.++
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~ 48 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEI 48 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecC
Confidence 357999999964 33344578899999987 57888888875
No 210
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=49.09 E-value=18 Score=32.82 Aligned_cols=37 Identities=16% Similarity=0.010 Sum_probs=26.4
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP 329 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP 329 (701)
.+..|.|||+|.+..+|..|.+ +... ....+.++.|.
T Consensus 51 ~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 51 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp ETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCC
T ss_pred CccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCC
Confidence 3457899999999999999996 4433 23345666654
No 211
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.77 E-value=12 Score=31.96 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=23.0
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYY 214 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 214 (701)
...+||.|.|||.+..+ +.|+++|+++.
T Consensus 6 ~~~~~lfVgnLp~~~te---~~L~~~F~~~G 33 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDE---DEITASFRRFG 33 (114)
T ss_dssp SCCCCEEEECCCTTCCH---HHHHHHTTTTC
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhcC
Confidence 34689999999998764 77999999874
No 212
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.80 E-value=17 Score=29.42 Aligned_cols=28 Identities=4% Similarity=0.118 Sum_probs=23.2
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYY 214 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 214 (701)
...+||.|.|||.+..+ +.|+++|+++.
T Consensus 6 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G 33 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTA---DDLRQLFGDRK 33 (93)
T ss_dssp CCCCCEEEECCCTTCCH---HHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcC
Confidence 45689999999998764 77999999875
No 213
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=51.91 E-value=4.3 Score=34.81 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=25.7
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
+..+.|||+|.+..+|+.|.+.+.... ...+.|+.|
T Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 55 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 456899999999999999988655432 233445555
No 214
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.98 E-value=15 Score=30.27 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=22.1
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKY 213 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 213 (701)
...++|.|.|||.+..+ +.|+++|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATE---ETLQEVFEKA 39 (101)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHCSSC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC
Confidence 45689999999998754 7799999875
No 215
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.55 E-value=8 Score=33.34 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.6
Q ss_pred ccCCceEEEEeCCHHHHHHHHH
Q 039780 292 EKENAVAFVCFKTRYAAVVAAE 313 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q 313 (701)
.+..|.|||+|++..+|..|.+
T Consensus 58 g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 58 GRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp SCEEEEEEEEBSSHHHHHHHGG
T ss_pred CCCCeEEEEEECCHHHHHHHHh
Confidence 4567899999999999999988
No 216
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=43.98 E-value=18 Score=31.31 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=6.3
Q ss_pred HHHHHHHHHh
Q 039780 235 NDAEKICRVF 244 (701)
Q Consensus 235 ~~~e~~~~~l 244 (701)
++.+++++.|
T Consensus 82 e~A~~Ai~~L 91 (118)
T 3ue2_A 82 SETHKAIQAL 91 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4556666666
No 217
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.07 E-value=8.2 Score=33.83 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=20.2
Q ss_pred ccCCceEEEEeCCHHHHHHHHHH
Q 039780 292 EKENAVAFVCFKTRYAAVVAAEI 314 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q~ 314 (701)
.++.|.|||+|.+..+|..|.+.
T Consensus 65 gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 65 GRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp SCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCEeeEEEEEECCHHHHHHHHHh
Confidence 45679999999999999999874
No 218
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=41.93 E-value=25 Score=33.41 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=29.1
Q ss_pred ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
..+|.|.|+|.+..+ +.|+++|+++ |.+.++.+.+|
T Consensus 103 ~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~~~i~~d 138 (213)
T 4f02_A 103 VGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCD 138 (213)
T ss_dssp TTEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEE
T ss_pred cccceECCcccccHH---HHHHHHHhhc--CCeEEEEeecc
Confidence 468999999998764 7899999987 46778887665
No 219
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=47.53 E-value=5.6 Score=34.05 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=22.3
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYY 214 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 214 (701)
...++|.|.|||.+..+ +.|+++|+++.
T Consensus 5 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G 32 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTI---ESVADYFKQIG 32 (116)
Confidence 44689999999987654 67889998864
No 220
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=41.33 E-value=25 Score=28.86 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=21.8
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhhC
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYY 214 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 214 (701)
..++|.|.|||.+..+ +.|+++|+++.
T Consensus 16 ~~~~l~V~nLp~~~t~---~~l~~~F~~~G 42 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSV---AELKVAISELF 42 (101)
T ss_dssp CSEEEEEECCCTTSCH---HHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 4689999999998764 67888888764
No 221
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=41.31 E-value=29 Score=33.36 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=27.0
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
.|.|||+|.+..+|..|.+.+.... ...+.++.|..
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 6789999999999999998766542 34556666643
No 222
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=41.24 E-value=13 Score=33.20 Aligned_cols=22 Identities=32% Similarity=0.187 Sum_probs=19.4
Q ss_pred ccCCceEEEEeCCHHHHHHHHH
Q 039780 292 EKENAVAFVCFKTRYAAVVAAE 313 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q 313 (701)
.+..+.|||+|++..+|..|.+
T Consensus 83 g~srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 83 GRVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp SCSSCCCEEECSHHHHHHHHTT
T ss_pred CCCceEEEEEeCCHHHHHHHHh
Confidence 4678999999999999999983
No 223
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=40.16 E-value=23 Score=32.94 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=26.4
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP 329 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP 329 (701)
.|.|||+|.+..+|+.|.+.++... ...+.++.|.
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 6799999999999999998766543 2345566654
No 224
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=39.49 E-value=22 Score=28.80 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780 183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKY 213 (701)
Q Consensus 183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 213 (701)
....+||.|.|||.+..+ +.|+++|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~---~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITE---DELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCCH---HHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhhC
Confidence 345689999999998754 6799999875
No 225
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.25 E-value=27 Score=29.37 Aligned_cols=28 Identities=4% Similarity=0.217 Sum_probs=22.4
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYY 214 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 214 (701)
+..+||.|.|||.+..+ +.|+++|+++.
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~G 50 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTE---RDLVSLFARFQ 50 (115)
T ss_dssp SCCSEEEEECCCTTCCH---HHHHHHTHHHH
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 34589999999997654 67889998874
No 226
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.39 E-value=23 Score=29.31 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=23.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780 296 AVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA 328 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A 328 (701)
+.+||||++..+|..|.+ +...+ ....+|++|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 449999999999999888 55443 234566665
No 227
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=36.50 E-value=37 Score=30.21 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=27.5
Q ss_pred eeEEEeCC----CCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780 187 FTVLVRAV----PWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR 226 (701)
Q Consensus 187 ~TVlV~~I----P~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~ 226 (701)
-.|.|.|+ |....+ +.|+++|+++ |.|.++.+..|
T Consensus 3 ~kI~VgnL~~~~~~~tte---~~Lk~~Fs~f--GeV~~~~li~D 41 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD---ISIKNYFKKY--GEISHFEAFND 41 (136)
T ss_dssp CEEEEEESSSSCCCCCCH---HHHHHHHHTT--SCCSEEEEEEC
T ss_pred cEEEEeCCCCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 36899999 887654 7899999986 46777777666
No 228
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=34.28 E-value=32 Score=32.83 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=29.8
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780 293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE 330 (701)
Q Consensus 293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~ 330 (701)
+..|.+||.|.+..+|+.|.+.+.... .....++.+|+
T Consensus 173 ~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 173 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred CceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 345899999999999999999987753 44566777664
No 229
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=32.75 E-value=8.1 Score=32.01 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.0
Q ss_pred ccCCceEEEEeCCHHHHHHHHH
Q 039780 292 EKENAVAFVCFKTRYAAVVAAE 313 (701)
Q Consensus 292 ~~~~~~aFVtF~s~~~A~~a~q 313 (701)
.+..|.|||+|.+..+|+.|.+
T Consensus 47 g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 47 GVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp SCEEEEEEEEESSCCCHHHHTT
T ss_pred CCccceEEEEECCHHHHHHHHh
Confidence 3456899999999999998887
No 230
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=32.30 E-value=27 Score=32.21 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=21.1
Q ss_pred cceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780 185 SHFTVLVRAVPWSAEQSYSESVKEFFMKY 213 (701)
Q Consensus 185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 213 (701)
.++||.|.|||.+..+ +.|+++|+++
T Consensus 3 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGITE---EAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCCH---HHHHHHHHHH
Confidence 4689999999998764 6788898876
No 231
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=28.88 E-value=36 Score=35.47 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC
Q 039780 295 NAVAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 295 ~~~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
.|.|||+|++..+|+.|.+.+...
T Consensus 56 kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 56 KPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp CSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 379999999999999999987764
No 232
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=26.60 E-value=33 Score=23.20 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=12.5
Q ss_pred hhhhhHHHHHHHHHHHH
Q 039780 527 SVMAPLILPFLLIYFVL 543 (701)
Q Consensus 527 s~i~Plil~f~~~yF~l 543 (701)
+.+.|+++.++.+||++
T Consensus 4 ~~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMI 20 (37)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667888888888765
No 233
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.75 E-value=75 Score=27.25 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=26.2
Q ss_pred cceeEEE--eCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780 185 SHFTVLV--RAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV 224 (701)
Q Consensus 185 s~~TVlV--~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~ 224 (701)
..+++.| -|+|.+..+ +.|+++|+++. .+.++.+.
T Consensus 24 pt~~L~V~Ng~L~~~~te---~~L~~~F~~fG--~v~~v~i~ 60 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSR---NQLLPVLEKCG--LVDALLMP 60 (114)
T ss_dssp CCSEEEEETCTGGGTCCH---HHHHHHHHHHS--CEEEEECC
T ss_pred CCCEEEEECCCCCCCCCH---HHHHHHHHhcC--CeEEEEEe
Confidence 3578999 559987654 78999999884 66666653
No 234
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=24.55 E-value=78 Score=29.11 Aligned_cols=55 Identities=13% Similarity=0.230 Sum_probs=35.5
Q ss_pred eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHH-----HHHHHHHHHHHhcc
Q 039780 187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQR-----LMNDAEKICRVFKG 246 (701)
Q Consensus 187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~-----L~~~~e~~~~~lk~ 246 (701)
.+|.|.|+|.+..+ +.|+++|+++ |.|.++.+..+-.+-.. =.++.+++.+.|.+
T Consensus 47 l~l~VgNL~~~vte---d~L~~~Fs~f--G~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG 106 (164)
T 1sjr_A 47 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 106 (164)
T ss_dssp EEEEECSCCSCCCH---HHHHHHHHHH--SCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTT
T ss_pred EEEEEeCcCCCCCH---HHHHHHHHhc--CCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 46789999987654 6799999988 57888887543211100 12455666666633
No 235
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.83 E-value=1.1e+02 Score=25.91 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=29.5
Q ss_pred ceEEEEeCCHHHHHHHHHH-hccCCCCceEEeeCC--CCCCeeecccC
Q 039780 296 AVAFVCFKTRYAAVVAAEI-LHSENPMLWVTEMAP--EPNDVLWSNLS 340 (701)
Q Consensus 296 ~~aFVtF~s~~~A~~a~q~-~~~~~p~~~~v~~AP--~P~DIiW~Nl~ 340 (701)
+.|.|||.+...|+.+.+. .+.-+.....|.+.| +|+-+.=++|.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecCC
Confidence 8999999999998877664 333344556666643 45555555544
No 236
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.24 E-value=1.3e+02 Score=25.07 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=26.3
Q ss_pred CcceeEEEeCCCCCCh--------hhhHHHHHHHHhhhCCCCcceEEE
Q 039780 184 PSHFTVLVRAVPWSAE--------QSYSESVKEFFMKYYAPSYLSHHM 223 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~--------~~~~~~l~~~F~~~~~~~v~~v~i 223 (701)
...+||.|+|+..... +.+++.|+++|+++ |.+.++.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 3468999999944221 12567899999987 46777755
No 237
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=22.35 E-value=70 Score=28.00 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=22.8
Q ss_pred CcceeEEEeCCCCCChhhhHHHHHHHHhhhC
Q 039780 184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYY 214 (701)
Q Consensus 184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 214 (701)
....||.|.|||.+..+ +.|+++|+.+.
T Consensus 43 ~~~~~l~V~nLp~~~te---~~L~~~F~~~G 70 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQE---KDLKYIFGRYV 70 (143)
T ss_dssp SCCSEEEEEEECTTCCH---HHHHHHHGGGC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 34579999999998754 77999999874
No 238
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=22.02 E-value=91 Score=27.41 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=35.8
Q ss_pred eEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHH-----HHHHHHHHHHhcc
Q 039780 188 TVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRL-----MNDAEKICRVFKG 246 (701)
Q Consensus 188 TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L-----~~~~e~~~~~lk~ 246 (701)
.|.|.|+|.+..+ +.|++.|+++ |.|.++.+..+.+..+.. .++.+++++.|.+
T Consensus 30 ~I~V~NL~~~vte---~~L~~lFs~y--G~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG 88 (130)
T 3zzy_A 30 RIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 88 (130)
T ss_dssp EEEEESCCSCCCH---HHHHHHHTTS--SCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCH---HHHHHHHhCc--CCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 5679999987654 6799999987 578888776553221111 2456677777733
No 239
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.63 E-value=53 Score=27.33 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=17.8
Q ss_pred eEEEEeCCHHHHHHHHHHhccC
Q 039780 297 VAFVCFKTRYAAVVAAEILHSE 318 (701)
Q Consensus 297 ~aFVtF~s~~~A~~a~q~~~~~ 318 (701)
.+||||++..+|..|.+ +...
T Consensus 60 ~~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 60 QMLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp EEEEECSCSHHHHHHHH-GGGS
T ss_pred cEEEEEcChHHHHHHHh-cCCe
Confidence 39999999999999998 5544
No 240
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.98 E-value=99 Score=26.84 Aligned_cols=52 Identities=10% Similarity=0.069 Sum_probs=33.5
Q ss_pred EEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHH-----HHHHHHHHHHHhcc
Q 039780 189 VLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQR-----LMNDAEKICRVFKG 246 (701)
Q Consensus 189 VlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~-----L~~~~e~~~~~lk~ 246 (701)
|.|.|+|.+..+ +.|++.|+++ |.|.++.+..+.+ ... =.++.+++.+.|.+
T Consensus 28 l~V~NL~~~vt~---~~L~~~Fs~y--G~V~~v~i~~~~G-f~aFVef~~~~~A~~A~~~LnG 84 (124)
T 2e5i_A 28 LSIQNPLYPITV---DVLYTVCNPV--GKVQRIVIFKRNG-IQAMVEFESVLCAQKAKAALNG 84 (124)
T ss_dssp EEEESCCSCCCH---HHHHHHHTTT--SCEEEEEEEESSS-EEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEcCcCCCCCH---HHHHHHHHhc--CCEEEEEEEeCCC-CEEEEEECCHHHHHHHHHHhCC
Confidence 458999987654 6799999987 5788887755421 100 02455666666643
Done!