BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039782
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CJ69|BMPER_MOUSE BMP-binding endothelial regulator protein OS=Mus musculus GN=Bmper
PE=1 SV=1
Length = 685
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 71 CKPQCKHRIANCDSPGSACYDPRFIGGDGIVFYFHGKSNEHFSLVSDSELQINA-RFIGH 129
C P C + C G DP + DG F F G + L D + + +
Sbjct: 353 CCPICTEKPGVCTVFG----DPHYNTFDGRTFNFQGTC--QYVLTKDCSSPASPFQVLVK 406
Query: 130 RPAGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDHLKFSYNGQDLVIP 182
A R+R F+W +++ ++ + SL+ HL +NG + +P
Sbjct: 407 NDARRTRSFSWTKSVELMLGESTVSLQ-----------QHLTVRWNGSRIALP 448
>sp|Q59S50|DBP7_CANAL ATP-dependent RNA helicase DBP7 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP7 PE=3 SV=1
Length = 727
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 25/197 (12%)
Query: 131 PAGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDHLKFSY--NGQDLVIPEGPLSI 188
P +++ T++ + + + +FS + DHL+F + Q LVIP
Sbjct: 115 PTSTTKELTYLPSNAPMKDATNFSGLGLNEKLSIHLTDHLRFMHPTKIQQLVIPS----- 169
Query: 189 WYSEEKDVKVERVSSKNSAIVSLKDTAEILVNVVPVTKEDDRVHKYQVPADD-CFAHLEV 247
S E D+ V+ + + + L V+P+ + R +K+++ + FA +
Sbjct: 170 LISTENDLFVKAQTG----------SGKTLAFVLPIFHKLMRENKFKINRESGLFAIILT 219
Query: 248 QFRFFNLSAKVDGVLGRTYRPDFENPAKPGVAMAVLGGEKEYKTESLFSTNCKTCIFATG 307
R L+ ++ GVL R + PG+ V+GGEK+ ++ C + G
Sbjct: 220 PTR--ELATQIYGVLETLTR--CHHWIVPGI---VIGGEKKKSEKARLRKGCNILVATPG 272
Query: 308 SGADHQETTELMKFGTL 324
ADH E T+ + L
Sbjct: 273 RLADHLENTKTLDISQL 289
>sp|Q5N3J1|RPIA_SYNP6 Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=rpiA PE=3 SV=2
Length = 232
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 107 KSNEHFSLVSDSELQINARFIGHRPAGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNE 166
+S L S S + +++G R R+ + T IQA+ FQS + E T NE
Sbjct: 20 QSGMVVGLGSGSTAALMIQYLGDRV--RNGELTNIQAVPTSFQSSVLANEYGIPLTTLNE 77
Query: 167 IDHLKFSYNGQDLVIPE 183
+D + + +G D V P+
Sbjct: 78 VDRIDIAIDGADEVDPQ 94
>sp|P97280|ITIH3_MESAU Inter-alpha-trypsin inhibitor heavy chain H3 OS=Mesocricetus
auratus GN=ITIH3 PE=1 SV=1
Length = 886
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 18/73 (24%)
Query: 254 LSAKVDGVLGRTYRP-DFE--------NPAKPGVAMAV--------LGGEKEYKTESLFS 296
+SA+ G+LG+ +RP DFE +PAKP M V G +++Y+ ++
Sbjct: 798 MSARTHGLLGQFFRPFDFEVSDVRPGSDPAKPDATMVVKNHQLTVTRGSQRDYRKDASVG 857
Query: 297 TNCKTCIFATGSG 309
T TC F +G
Sbjct: 858 TKV-TCWFVHNNG 869
>sp|Q502B3|B3GL2_DANRE UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 OS=Danio
rerio GN=b3galnt2 PE=2 SV=1
Length = 491
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 123 NARFIGHRPAGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDH---------LKFS 173
+A +G R A R + +G+L H+ L A TW + +KF
Sbjct: 26 SAELLGFRAADRPKADVREVLVGVLSARHNHELRQAIRDTWLGYLKQHPHFQNRVLVKFI 85
Query: 174 YNGQDLVIPEGPLSIWYS-EEKDVKVERVSSKNSAIVSLKDTAEILVNVVPVTKEDDRV 231
Q +P L YS + ++ VS + AI+S+ D++ +L + VPV D +V
Sbjct: 86 IGAQGCSVPLEDLEDQYSCSQLELSEAAVSGQEMAILSVPDSSALLQSDVPVLSLDFKV 144
>sp|Q8D951|KATG_VIBVU Catalase-peroxidase OS=Vibrio vulnificus (strain CMCP6) GN=katG
PE=3 SV=1
Length = 723
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 163 WDNEIDHLKFSYNGQDLVIPEGPLSIWY-------SEEKDVKVERVSSKNSAIVSLKDTA 215
WDN HL FSY D + + P W E+K V VE + +++ I++ A
Sbjct: 325 WDNGFFHLLFSY---DWWLQKSPAGAWQWEPVNIKEEDKPVDVEDPTIRHNPIMT---DA 378
Query: 216 EILVNVVP-VTKEDDRVHKYQVPADDCFAHLEVQFRFFNLSAKVDGVLGRTYRPDFENPA 274
++ + + P K +R HK + FA +F L+ + G R + PD PA
Sbjct: 379 DMALKLDPEYRKISERFHKDPAYFSETFARA-----WFKLTHRDMGPKARYFGPDV--PA 431
Query: 275 KPGVAM-AVLGGEKEYKTESLFSTNCKTCIFATG 307
+ + V G K+Y +++ K I A+G
Sbjct: 432 ETLIWQDPVPTGRKDYDVDAV-----KAKIIASG 460
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,071,542
Number of Sequences: 539616
Number of extensions: 5526765
Number of successful extensions: 11652
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 11640
Number of HSP's gapped (non-prelim): 29
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)