Query 039782
Match_columns 340
No_of_seqs 92 out of 104
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 13:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06830 Root_cap: Root cap; 100.0 7.2E-37 1.6E-41 230.7 2.8 57 248-304 1-57 (57)
2 PF06668 ITI_HC_C: Inter-alpha 98.9 2.3E-08 5.1E-13 90.6 14.4 133 117-272 1-138 (188)
3 smart00216 VWD von Willebrand 97.9 0.00048 1E-08 58.1 14.3 116 87-222 13-135 (162)
4 PF00094 VWD: von Willebrand f 97.2 0.0058 1.2E-07 50.1 10.9 111 88-220 3-119 (159)
5 cd01951 lectin_L-type legume l 87.6 8.5 0.00018 34.6 10.9 96 95-214 70-177 (223)
6 smart00282 LamG Laminin G doma 59.6 39 0.00085 27.2 6.5 67 95-179 12-85 (135)
7 PF13650 Asp_protease_2: Aspar 58.8 29 0.00064 25.6 5.2 20 247-266 71-90 (90)
8 COG3354 FlaG Putative archaeal 53.0 1.1E+02 0.0023 28.2 8.6 63 109-190 49-116 (154)
9 PF00139 Lectin_legB: Legume l 51.8 47 0.001 30.5 6.4 106 94-214 78-190 (236)
10 PF03633 Glyco_hydro_65C: Glyc 51.3 21 0.00047 25.8 3.3 38 144-181 12-52 (54)
11 PF07481 DUF1521: Domain of Un 47.8 45 0.00097 31.1 5.5 62 87-157 41-104 (171)
12 cd00110 LamG Laminin G domain; 45.3 1.1E+02 0.0025 24.5 7.0 63 97-178 33-102 (151)
13 cd00225 API3 Ascaris pepsin in 43.5 20 0.00044 32.9 2.6 27 95-127 94-120 (159)
14 cd06899 lectin_legume_LecRK_Ar 43.1 2.6E+02 0.0057 25.9 9.9 98 95-212 78-184 (236)
15 COG1245 Predicted ATPase, RNas 39.0 21 0.00046 38.3 2.3 32 223-264 73-108 (591)
16 PF05720 Dicty_CAD: Cell-cell 37.8 86 0.0019 26.1 5.2 45 144-193 27-74 (82)
17 PF11008 DUF2846: Protein of u 36.6 1.1E+02 0.0023 25.4 5.7 61 107-175 32-92 (117)
18 PF13510 Fer2_4: 2Fe-2S iron-s 35.9 26 0.00056 27.7 1.9 18 168-185 2-19 (82)
19 PF09087 Cyc-maltodext_N: Cycl 35.0 44 0.00095 27.7 3.1 38 169-211 15-55 (88)
20 PF02210 Laminin_G_2: Laminin 34.2 2.2E+02 0.0047 21.9 7.6 67 97-181 6-79 (128)
21 PF12992 DUF3876: Domain of un 30.8 1E+02 0.0022 25.9 4.6 63 188-262 18-84 (95)
22 TIGR02745 ccoG_rdxA_fixG cytoc 29.1 3.7E+02 0.008 28.0 9.2 51 44-100 238-289 (434)
23 PF10989 DUF2808: Protein of u 28.0 4E+02 0.0087 23.1 8.4 91 133-226 24-132 (146)
24 PRK06944 sulfur carrier protei 27.6 48 0.001 24.3 2.0 15 170-184 1-15 (65)
25 PRK05659 sulfur carrier protei 27.5 51 0.0011 24.3 2.2 15 170-184 1-15 (66)
26 PF06394 Pepsin-I3: Pepsin inh 26.7 32 0.00069 28.1 1.0 30 92-127 7-37 (76)
27 cd05479 RP_DDI RP_DDI; retrope 26.1 2.6E+02 0.0057 23.2 6.4 24 169-192 18-43 (124)
28 PF13464 DUF4115: Domain of un 25.9 65 0.0014 24.8 2.5 19 167-185 47-65 (77)
29 PF04790 Sarcoglycan_1: Sarcog 25.6 3E+02 0.0065 26.8 7.5 21 104-124 74-94 (264)
30 cd05484 retropepsin_like_LTR_2 24.8 2E+02 0.0043 22.3 5.1 53 170-222 3-66 (91)
31 cd00070 GLECT Galectin/galacto 24.3 1.7E+02 0.0038 24.2 5.0 54 117-180 39-101 (127)
32 cd05483 retropepsin_like_bacte 23.9 1.5E+02 0.0033 21.9 4.2 23 169-191 4-28 (96)
33 KOG1446 Histone H3 (Lys4) meth 23.9 1.3E+02 0.0028 30.4 4.8 74 168-256 191-272 (311)
34 PRK00407 hypothetical protein; 23.8 95 0.0021 27.2 3.4 72 138-210 63-136 (139)
35 PRK15172 putative aldose-1-epi 23.3 5.7E+02 0.012 24.5 8.9 76 159-234 58-163 (300)
36 PF00054 Laminin_G_1: Laminin 21.7 4E+02 0.0087 22.0 6.6 64 98-179 7-76 (131)
37 TIGR03032 conserved hypothetic 21.6 48 0.001 33.7 1.3 43 239-292 122-169 (335)
38 PF14652 DUF4457: Domain of un 20.5 4.1E+02 0.0089 26.3 7.5 85 90-181 9-128 (329)
No 1
>PF06830 Root_cap: Root cap; InterPro: IPR009646 The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die [].This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process.
Probab=100.00 E-value=7.2e-37 Score=230.72 Aligned_cols=57 Identities=61% Similarity=1.183 Sum_probs=56.5
Q ss_pred eeEEeccCcccccccceeccCCCcccCCCCccceeecCCCcccccCccccCCCceee
Q 039782 248 QFRFFNLSAKVDGVLGRTYRPDFENPAKPGVAMAVLGGEKEYKTESLFSTNCKTCIF 304 (340)
Q Consensus 248 ~FKF~~Lsd~V~GVLGQTYRpdyvn~vk~gv~MPvmGGe~~Y~tSsLfsaDC~v~rF 304 (340)
||||++|||+|||||||||||||+||+|+||+|||||||++|+|||||||||++|||
T Consensus 1 ~FkF~~Lt~~V~GVLGQTYr~~yvn~vk~g~~MPvmGG~~~y~ts~lfs~DC~v~rF 57 (57)
T PF06830_consen 1 QFKFYSLTDDVHGVLGQTYRPDYVNPVKVGVAMPVMGGEDKYRTSSLFSTDCAVCRF 57 (57)
T ss_pred CceeeccccccceeccccccCCcccccccCCCCccccCCccceeccccccCcchhcC
Confidence 799999999999999999999999999999999999999999999999999999998
No 2
>PF06668 ITI_HC_C: Inter-alpha-trypsin inhibitor heavy chain C-terminus; InterPro: IPR010600 This entry represents the C-terminal region of inter-alpha-trypsin inhibitor heavy chains. Inter-alpha-trypsin inhibitors are glycoproteins with a high inhibitory activity against trypsin, built up from different combinations of four polypeptides: bikunin and the three heavy chains that belong to this family (HC1, HC2, HC3). The heavy chains do not have any protease inhibitory properties but have the capacity to interact in vitro and in vivo with hyaluronic acid, which promotes the stability of the extra-cellular matrix. This domain is associated with the VWA domain IPR002035 from INTERPRO.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0030212 hyaluronan metabolic process
Probab=98.94 E-value=2.3e-08 Score=90.56 Aligned_cols=133 Identities=23% Similarity=0.363 Sum_probs=93.9
Q ss_pred CCcceeeeEEeecCCCC-CCCCceeEEeeeeeecceeEEEeeeecccCCCCCceEEEEECCeEeecCCCCCceeEeCCCC
Q 039782 117 DSELQINARFIGHRPAG-RSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDHLKFSYNGQDLVIPEGPLSIWYSEEKD 195 (340)
Q Consensus 117 D~~LhINAHFIG~r~~g-~~RDfTWiQalgi~F~~H~l~i~A~k~~~Wd~~vD~l~vt~dGe~v~ip~~~~a~W~s~~~~ 195 (340)
|..+.+|.+.||..++. ..+-=|+...|||.|+.-.+.|+.+ -++++|+=+++...++=...+.-. .++
T Consensus 1 ~sGi~VnGqliGak~~~~~~~~~TYF~~i~I~~~~~~~~I~vt--------~~~I~l~~g~~~~~l~w~~t~~~~--~~~ 70 (188)
T PF06668_consen 1 DSGITVNGQLIGAKKPPGEKKLRTYFGRIGITFQKPDVKIEVT--------PEKITLTDGRRRSVLSWSDTASVK--QPG 70 (188)
T ss_pred CCCEEEeCEEccCCCCCCCCCCCceEEEEEEEECCCCeEEEEE--------ccEEEEecCCCceeEeEcceEEEc--cCc
Confidence 67899999999985543 8899999999999999888888888 677777655566655322222222 267
Q ss_pred eEEEEEcCCCeEEEEecccEEEEEEEEeccccCCcccccCCCCCCccceeeeeeEEe---ccCcccccccceeccC-CCc
Q 039782 196 VKVERVSSKNSAIVSLKDTAEILVNVVPVTKEDDRVHKYQVPADDCFAHLEVQFRFF---NLSAKVDGVLGRTYRP-DFE 271 (340)
Q Consensus 196 l~V~Rt~~~N~V~V~l~g~~~i~~~VVPit~eDsriHnYg~~~dD~faHLel~FKF~---~Lsd~V~GVLGQTYRp-dyv 271 (340)
|.|+=. ..-.|.|++.+-+++.+-.-.+ .+=|.| -.-|| +|-.. .||++|||+|||-|++ +|.
T Consensus 71 l~v~v~-k~~~l~v~~~~~v~F~Il~Hr~----~~~~~~------~~d~L--GfYi~ds~~lS~~vhGLLGQF~~~~~~~ 137 (188)
T PF06668_consen 71 LEVSVN-KNKNLTVTLGDGVTFVILLHRV----WKKHPY------QRDFL--GFYILDSHGLSPSVHGLLGQFYHEPDFE 137 (188)
T ss_pred EEEEEE-CCceEEEEeCCceEEEEEEEee----cCCCCC------CCCee--EEEecCCCCCCCcccccccCccCCCceE
Confidence 777643 3446999999999999865544 222233 23344 44333 6899999999999999 765
Q ss_pred c
Q 039782 272 N 272 (340)
Q Consensus 272 n 272 (340)
-
T Consensus 138 v 138 (188)
T PF06668_consen 138 V 138 (188)
T ss_pred E
Confidence 3
No 3
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=97.93 E-value=0.00048 Score=58.06 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=77.2
Q ss_pred CcccCCeeeccCCceEEEecCCCCceeeecC-C---cceeeeEEeecCCCCCCCCceeEEeeeeeecceeEEEeeeeccc
Q 039782 87 SACYDPRFIGGDGIVFYFHGKSNEHFSLVSD-S---ELQINARFIGHRPAGRSRDFTWIQALGILFQSHSFSLEAAKAAT 162 (340)
Q Consensus 87 s~C~DPRFiGGDG~~FYFHGkkd~~FcivSD-~---~LhINAHFIG~r~~g~~RDfTWiQalgi~F~~H~l~i~A~k~~~ 162 (340)
++-+||++.=.||.+|.|+| +-.|.|+.| . ++.|-++..... . +-+|..++-|..+++.+.+...
T Consensus 13 ~v~g~~~~~TFDg~~y~~~g--~C~yvL~~~~~~~~~f~V~~~~~~~~----~-~~~~~~~v~v~~~~~~i~~~~~---- 81 (162)
T smart00216 13 SVSGDPHYTTFDGVAYTFPG--NCYYVLAQDCSSEPTFSVLLKNVPCG----G-GATCLKSVKVELNGDEIELKDD---- 81 (162)
T ss_pred EEcCCCCeECcCCCEEeecC--ceEEEEEEECCCCCCEEEEEEecCCC----C-CceEEEEEEEEECCEEEEEEeC----
Confidence 47889999999999999966 667999888 3 555666554322 1 2689999999999988777531
Q ss_pred CCCCCceEEEEECCeEeecCCCCCce---eEeCCCCeEEEEEcCCCeEEEEecccEEEEEEEE
Q 039782 163 WDNEIDHLKFSYNGQDLVIPEGPLSI---WYSEEKDVKVERVSSKNSAIVSLKDTAEILVNVV 222 (340)
Q Consensus 163 Wd~~vD~l~vt~dGe~v~ip~~~~a~---W~s~~~~l~V~Rt~~~N~V~V~l~g~~~i~~~VV 222 (340)
.++|.+||+++.+|...... |... ..+.|..+ .-+|.|...|.-.+.+.+-
T Consensus 82 ------~~~v~vng~~v~~p~~~~~~~v~~~~~-~~~~v~~~--~~gl~v~~dg~~~~~V~~~ 135 (162)
T smart00216 82 ------NGTVTVNGQQVSLPYKTSDGSIQIRSS-GGYVVVIT--SLGLQVTFDGLTLLSVQLP 135 (162)
T ss_pred ------CCEEEECCEEeeCCcCcCCceEEEEEC-ceEEEEEC--CCCEEEEECCCcEEEEEEC
Confidence 68999999999998743321 1211 12333322 4455555555444444443
No 4
>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes. Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].
Probab=97.21 E-value=0.0058 Score=50.12 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=72.6
Q ss_pred cccCCeeeccCCceEEEecCCCCcee--eecCCc----ceeeeEEeecCCCCCCCCceeEEeeeeeecceeEEEeeeecc
Q 039782 88 ACYDPRFIGGDGIVFYFHGKSNEHFS--LVSDSE----LQINARFIGHRPAGRSRDFTWIQALGILFQSHSFSLEAAKAA 161 (340)
Q Consensus 88 ~C~DPRFiGGDG~~FYFHGkkd~~Fc--ivSD~~----LhINAHFIG~r~~g~~RDfTWiQalgi~F~~H~l~i~A~k~~ 161 (340)
+=+||+|+=.||..|.|+| +..|- |+.|.. +++.+... +.+.....-+++.+|.|.+++|.+.|....
T Consensus 3 v~g~~~~~TFDg~~y~~~~--~c~y~~vl~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~v~i~~~~~~i~i~~~~-- 76 (159)
T PF00094_consen 3 VYGDPHITTFDGKSYSFPG--NCTYILVLAQDCSSDPKFSFSVENK--NCPCGQSGTSCTRKVTIRLGNHEIEIKPNN-- 76 (159)
T ss_pred EeCCCeEEcCCCCEEecCC--CceEEEEeecccCccccccccceee--eeccCCCCcceeeEEEEEcccceeeEeccc--
Confidence 4579999999999999999 56788 776633 34444432 111223333499999999999988887652
Q ss_pred cCCCCCceEEEEECCeEeecCCCCCceeEeCCCCeEEEEEcCCCeEEEEecccEEEEEE
Q 039782 162 TWDNEIDHLKFSYNGQDLVIPEGPLSIWYSEEKDVKVERVSSKNSAIVSLKDTAEILVN 220 (340)
Q Consensus 162 ~Wd~~vD~l~vt~dGe~v~ip~~~~a~W~s~~~~l~V~Rt~~~N~V~V~l~g~~~i~~~ 220 (340)
.+.+++||+++..|... .+..|+++. ...+.|....-++|.+.
T Consensus 77 -------~~~v~vng~~~~~p~~~--------~~~~i~~~~-~~~~~v~~~~~~~v~~~ 119 (159)
T PF00094_consen 77 -------GDQVTVNGQPVSLPYWS--------SGGSIERYS-GGFVVVVFSSGVRVQVN 119 (159)
T ss_pred -------cceEEEeeecccCcccc--------CcceEEeec-cccEEEEEecCCeEEEE
Confidence 78999999999984321 223555554 23344444444444433
No 5
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=87.59 E-value=8.5 Score=34.57 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=57.4
Q ss_pred eccCCceEEEecCCCCceeeecCCcceeeeEEeecCCCCCCCCceeEEeeeeeecceeEEEeeeecccCCCCCceEEEEE
Q 039782 95 IGGDGIVFYFHGKSNEHFSLVSDSELQINARFIGHRPAGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDHLKFSY 174 (340)
Q Consensus 95 iGGDG~~FYFHGkkd~~FcivSD~~LhINAHFIG~r~~g~~RDfTWiQalgi~F~~H~l~i~A~k~~~Wd~~vD~l~vt~ 174 (340)
.||||..|-|+......-.. +.. .--.|. ..- -+.|+|-||.|+= ...||.+.+|+.|-+
T Consensus 70 ~~gdG~aF~l~~~~~~~~~~-~g~-----~~~lG~-------~~~-~~~~aVefDT~~N------~~~~dp~~~higi~~ 129 (223)
T cd01951 70 NGADGIAFVLQNDPAGALGG-GGG-----GGGLGY-------GGI-GNSVAVEFDTYKN------DDNNDPNGNHISIDV 129 (223)
T ss_pred CCCCcEEEEEecCCCCcccc-CCC-----CCccCc-------ccc-CCeEEEEEecccc------CCCCCCCCCEEEEEc
Confidence 58999999999765322111 000 001111 111 1578888887731 223788899999999
Q ss_pred CCeEee-----------cCCCCC-ceeEeCCCCeEEEEEcCCCeEEEEeccc
Q 039782 175 NGQDLV-----------IPEGPL-SIWYSEEKDVKVERVSSKNSAIVSLKDT 214 (340)
Q Consensus 175 dGe~v~-----------ip~~~~-a~W~s~~~~l~V~Rt~~~N~V~V~l~g~ 214 (340)
||..-. ++.... .+|. .+.|+.....+.+.|+|.+.
T Consensus 130 n~~~~~~~~~~~~~~~~~~~~~~~g~~~----~v~I~Y~~~~~~L~v~l~~~ 177 (223)
T cd01951 130 NGNGNNTALATSLGSASLPNGTGLGNEH----TVRITYDPTTNTLTVYLDNG 177 (223)
T ss_pred CCCCCCcccccccceeeCCCccCCCCEE----EEEEEEeCCCCEEEEEECCC
Confidence 998532 111111 2233 48888888888999998775
No 6
>smart00282 LamG Laminin G domain.
Probab=59.62 E-value=39 Score=27.24 Aligned_cols=67 Identities=18% Similarity=0.394 Sum_probs=38.6
Q ss_pred eccCCceEEEecCCCCceeeecCCcceeeeEE-eecCC-----C-CCCCCceeEEeeeeeecceeEEEeeeecccCCCCC
Q 039782 95 IGGDGIVFYFHGKSNEHFSLVSDSELQINARF-IGHRP-----A-GRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEI 167 (340)
Q Consensus 95 iGGDG~~FYFHGkkd~~FcivSD~~LhINAHF-IG~r~-----~-g~~RDfTWiQalgi~F~~H~l~i~A~k~~~Wd~~v 167 (340)
.-.||.-||-++..+.+|-.+.=.+=+|-.++ .|..+ + ..--|..| |++.|... .
T Consensus 12 ~~~~g~l~~~~~~~~~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~~dg~W----------H~v~i~~~--------~ 73 (135)
T smart00282 12 TSPNGLLLYAGSKNGGDYLALELRDGRLVLRYDLGSGPARLTSDPTPLNDGQW----------HRVAVERN--------G 73 (135)
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEECCeEeCCCCE----------EEEEEEEe--------C
Confidence 34579999998865566654442233344444 23211 1 22233344 77777765 5
Q ss_pred ceEEEEECCeEe
Q 039782 168 DHLKFSYNGQDL 179 (340)
Q Consensus 168 D~l~vt~dGe~v 179 (340)
..+.+++||+..
T Consensus 74 ~~~~l~VD~~~~ 85 (135)
T smart00282 74 RRVTLSVDGENP 85 (135)
T ss_pred CEEEEEECCCcc
Confidence 678999998643
No 7
>PF13650 Asp_protease_2: Aspartyl protease
Probab=58.76 E-value=29 Score=25.62 Aligned_cols=20 Identities=35% Similarity=0.757 Sum_probs=14.8
Q ss_pred eeeEEeccCcccccccceec
Q 039782 247 VQFRFFNLSAKVDGVLGRTY 266 (340)
Q Consensus 247 l~FKF~~Lsd~V~GVLGQTY 266 (340)
+.|-+.++....+|+||..+
T Consensus 71 ~~~~v~~~~~~~~~iLG~df 90 (90)
T PF13650_consen 71 VPFLVVDLGDPIDGILGMDF 90 (90)
T ss_pred EEEEEECCCCCCEEEeCCcC
Confidence 45555667789999999753
No 8
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=53.03 E-value=1.1e+02 Score=28.24 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=42.1
Q ss_pred CCceeeecCCcceeeeEEeecCCCCCCCCceeEEeeeeeecceeEEEeeeecccCCCCCceEEEEECCeEee-----cCC
Q 039782 109 NEHFSLVSDSELQINARFIGHRPAGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDHLKFSYNGQDLV-----IPE 183 (340)
Q Consensus 109 d~~FcivSD~~LhINAHFIG~r~~g~~RDfTWiQalgi~F~~H~l~i~A~k~~~Wd~~vD~l~vt~dGe~v~-----ip~ 183 (340)
.+||+|++|++ +|+.-- -|.++ ...|||--+.-..--.+.+.++|-+||+-+. .-.
T Consensus 49 ~~dFaIIndPg-~i~~~~---------~~g~~---------t~t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~~~~~ 109 (154)
T COG3354 49 QTDFAIINDPG-QIPYVG---------TDGPY---------TYTFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYVTFTS 109 (154)
T ss_pred hccEEEecCCC-CCcccc---------CCCce---------EEEEEEecCCCcccccCCCeEEEEEcCcEeccceEEEEe
Confidence 46899999986 232211 11111 4678888887777778889999999995443 334
Q ss_pred CCCceeE
Q 039782 184 GPLSIWY 190 (340)
Q Consensus 184 ~~~a~W~ 190 (340)
..++.|+
T Consensus 110 ~~gs~i~ 116 (154)
T COG3354 110 VNGSSIR 116 (154)
T ss_pred cCCCeeE
Confidence 5677886
No 9
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=51.80 E-value=47 Score=30.47 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=55.3
Q ss_pred eeccCCceEEEecCCCCceeeecCCcceeeeEEeecCCCCCCCCceeEEeeeeeecceeEEEeeeecccCCCCCceEEEE
Q 039782 94 FIGGDGIVFYFHGKSNEHFSLVSDSELQINARFIGHRPAGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDHLKFS 173 (340)
Q Consensus 94 FiGGDG~~FYFHGkkd~~FcivSD~~LhINAHFIG~r~~g~~RDfTWiQalgi~F~~H~l~i~A~k~~~Wd~~vD~l~vt 173 (340)
--||||..|.+|...+ ... .--.-+.|.-+.... ...=-+.++|-||.++ -.....|+ -+|+.|-
T Consensus 78 ~~~~dGlAFvi~~~~~--~~~------~~~g~~lG~~~~~~~-~~~~~~~vAVEFDT~~----N~~~~d~~--~nHIgI~ 142 (236)
T PF00139_consen 78 NNGGDGLAFVIQPDPN--LPG------GSSGGYLGLFNSSTD-GNGINNSVAVEFDTYK----NPEYNDPD--DNHIGID 142 (236)
T ss_dssp SS-BEEEEEEEEETTS--STT------TSSGGGTTTSSSSST-TGGGGCEEEEEEETST----CGGGTTTS--SSEEEEE
T ss_pred ccCCCceEEEEecCcc--ccc------CCCCCccCccccccC-CCccCcEEEEEEeeee----cccccccC--CCEEEEE
Confidence 3478999988877651 100 011222333211100 0112368999999887 12233344 4999999
Q ss_pred ECCeEeecCCCCC--ceeEe--CC---CCeEEEEEcCCCeEEEEeccc
Q 039782 174 YNGQDLVIPEGPL--SIWYS--EE---KDVKVERVSSKNSAIVSLKDT 214 (340)
Q Consensus 174 ~dGe~v~ip~~~~--a~W~s--~~---~~l~V~Rt~~~N~V~V~l~g~ 214 (340)
+||..-.-..... ..+.. .. -.+.|+....+..+.|.+.+.
T Consensus 143 ~n~~~s~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~ 190 (236)
T PF00139_consen 143 VNSVVSNKTASAGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDN 190 (236)
T ss_dssp ESSSSESEEEE----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEET
T ss_pred CCCCcccccccccccccccccccCCcEEEEEEEEcCCccEEEEEEecc
Confidence 9986433211110 11111 00 237778888888888888766
No 10
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=51.30 E-value=21 Score=25.78 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=18.7
Q ss_pred eeeeecceeEEEeeee--cccCCCCCc-eEEEEECCeEeec
Q 039782 144 LGILFQSHSFSLEAAK--AATWDNEID-HLKFSYNGQDLVI 181 (340)
Q Consensus 144 lgi~F~~H~l~i~A~k--~~~Wd~~vD-~l~vt~dGe~v~i 181 (340)
+.|.|.+|.|.|..++ +.-.-.+.+ .|+|.++|+++.|
T Consensus 12 F~~~~rg~~l~v~i~~~~v~v~~~~g~~~l~i~v~g~~~~L 52 (54)
T PF03633_consen 12 FRLRYRGHWLEVEITHEKVTVTLLSGDAPLTIKVYGEEVTL 52 (54)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEESS--EEEEETT-----
T ss_pred EEEEECCEEEEEEEECCEEEEEEccCCccEEEEECCCcccc
Confidence 3466677877776663 222223333 7777777777765
No 11
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=47.84 E-value=45 Score=31.08 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=35.0
Q ss_pred CcccCCee-eccCCce-EEEecCCCCceeeecCCcceeeeEEeecCCCCCCCCceeEEeeeeeecceeEEEee
Q 039782 87 SACYDPRF-IGGDGIV-FYFHGKSNEHFSLVSDSELQINARFIGHRPAGRSRDFTWIQALGILFQSHSFSLEA 157 (340)
Q Consensus 87 s~C~DPRF-iGGDG~~-FYFHGkkd~~FcivSD~~LhINAHFIG~r~~g~~RDfTWiQalgi~F~~H~l~i~A 157 (340)
.+-+||+| +.|||.+ |.| |++-.|-|=-=.-++||..=.|+ .-|.-.-|-|.-++..++|+-
T Consensus 41 riwGDPHvd~~Gdg~~~fDF--k~~~tf~L~DGTKItV~T~p~gn-------g~T~askLtIt~Gd~~~~V~g 104 (171)
T PF07481_consen 41 RIWGDPHVDADGDGKTDFDF--KGDMTFQLDDGTKITVDTVPWGN-------GMTYASKLTITNGDNAWQVEG 104 (171)
T ss_pred EEeCCCccccCCCcccceee--cCceEEEeCCCCEEEEeeeecCC-------CcEEeeeEEEEcCCceEEEee
Confidence 36799999 9999766 999 44555544222333333333333 345545555555555555443
No 12
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=45.32 E-value=1.1e+02 Score=24.46 Aligned_cols=63 Identities=22% Similarity=0.440 Sum_probs=36.3
Q ss_pred cCCceEEEecCCCCce-eeecCCcceeeeEE-ee-----cCCCCCCCCceeEEeeeeeecceeEEEeeeecccCCCCCce
Q 039782 97 GDGIVFYFHGKSNEHF-SLVSDSELQINARF-IG-----HRPAGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDH 169 (340)
Q Consensus 97 GDG~~FYFHGkkd~~F-civSD~~LhINAHF-IG-----~r~~g~~RDfTWiQalgi~F~~H~l~i~A~k~~~Wd~~vD~ 169 (340)
.||..||.+.+...+| .|--. +=+|-..+ .| .+.+..--|..| |++.|... ...
T Consensus 33 ~~g~l~~~~~~~~~~~~~l~l~-~g~l~~~~~~g~~~~~~~~~~~v~dg~W----------h~v~i~~~--------~~~ 93 (151)
T cd00110 33 PNGLLLYAGSQNGGDFLALELE-DGRLVLRYDLGSGSLVLSSKTPLNDGQW----------HSVSVERN--------GRS 93 (151)
T ss_pred CCeEEEEecCCCCCCEEEEEEE-CCEEEEEEcCCcccEEEEccCccCCCCE----------EEEEEEEC--------CCE
Confidence 3899999988754454 44333 22444444 22 111112334444 88887766 368
Q ss_pred EEEEECCeE
Q 039782 170 LKFSYNGQD 178 (340)
Q Consensus 170 l~vt~dGe~ 178 (340)
++|.+||++
T Consensus 94 ~~l~VD~~~ 102 (151)
T cd00110 94 VTLSVDGER 102 (151)
T ss_pred EEEEECCcc
Confidence 999999974
No 13
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=43.54 E-value=20 Score=32.88 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=23.9
Q ss_pred eccCCceEEEecCCCCceeeecCCcceeeeEEe
Q 039782 95 IGGDGIVFYFHGKSNEHFSLVSDSELQINARFI 127 (340)
Q Consensus 95 iGGDG~~FYFHGkkd~~FcivSD~~LhINAHFI 127 (340)
+++|-++|||-| |+|-+.-|-||.+|+
T Consensus 94 t~~DTtq~yFdG------C~VqnNklYvg~~~~ 120 (159)
T cd00225 94 SPDDTTQFYFDG------CMVQNNKVYVGNTYA 120 (159)
T ss_pred CCCcceEEEEee------eEEECCEEEECCEEe
Confidence 467889999987 999999999998887
No 14
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=43.08 E-value=2.6e+02 Score=25.87 Aligned_cols=98 Identities=15% Similarity=0.295 Sum_probs=50.4
Q ss_pred eccCCceEEEecCCCCceeeecCCcceeeeEEeecCCCCCCCCceeEEeeeeeecceeEEEeeeeccc-CCCCCceEEEE
Q 039782 95 IGGDGIVFYFHGKSNEHFSLVSDSELQINARFIGHRPAGRSRDFTWIQALGILFQSHSFSLEAAKAAT-WDNEIDHLKFS 173 (340)
Q Consensus 95 iGGDG~~FYFHGkkd~~FcivSD~~LhINAHFIG~r~~g~~RDfTWiQalgi~F~~H~l~i~A~k~~~-Wd~~vD~l~vt 173 (340)
.||||..|.++..+..-= -.-.-.+|.-+..-..... -+.++|.||+++= .. +|-+-+|+-|-
T Consensus 78 ~~gdGlAF~i~~~~~~~~--------~~~G~~lG~~~~~~~~~~~-~~~vAVEFDT~~n-------~~~~D~~~nHigId 141 (236)
T cd06899 78 LGGDGLAFFLAPTDSLPP--------ASSGGYLGLFNSSNNGNSS-NHIVAVEFDTFQN-------PEFGDPDDNHVGID 141 (236)
T ss_pred CCCCeEEEEEecCCCCCC--------CCCcceeeeecCCCCCCcc-cceEEEEeecccC-------cccCCCCCCeEEEE
Confidence 579999998886543200 0112333432211100011 2678888887531 22 36677999999
Q ss_pred ECCeEeecCCCCCceeEeC--------CCCeEEEEEcCCCeEEEEec
Q 039782 174 YNGQDLVIPEGPLSIWYSE--------EKDVKVERVSSKNSAIVSLK 212 (340)
Q Consensus 174 ~dGe~v~ip~~~~a~W~s~--------~~~l~V~Rt~~~N~V~V~l~ 212 (340)
+||. ... ....|.+. .-.+.|+..+.++.+.|.|.
T Consensus 142 vn~~-~S~---~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~ 184 (236)
T cd06899 142 VNSL-VSV---KAGYWDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLA 184 (236)
T ss_pred cCCc-ccc---eeeccccccccccCCCeEEEEEEEcCCCCEEEEEEE
Confidence 9985 111 11122211 01256666666677666664
No 15
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=38.97 E-value=21 Score=38.26 Aligned_cols=32 Identities=41% Similarity=0.791 Sum_probs=26.3
Q ss_pred eccccCCcccccCCCCCCccceeeeeeEEecc----Ccccccccce
Q 039782 223 PVTKEDDRVHKYQVPADDCFAHLEVQFRFFNL----SAKVDGVLGR 264 (340)
Q Consensus 223 Pit~eDsriHnYg~~~dD~faHLel~FKF~~L----sd~V~GVLGQ 264 (340)
|-.=|+.-+|.||.+ +||.|.| ..+|-|+||+
T Consensus 73 P~eLe~e~vHRYg~N----------gFkL~~LP~pr~G~V~GilG~ 108 (591)
T COG1245 73 PEELEEEVVHRYGVN----------GFKLYRLPTPRPGKVVGILGP 108 (591)
T ss_pred chhhcccceeeccCC----------ceEEecCCCCCCCcEEEEEcC
Confidence 555566789999875 7999998 6779999998
No 16
>PF05720 Dicty_CAD: Cell-cell adhesion domain; InterPro: IPR008601 This family is based on a group of Dictyostelium discoideum (Slime mould) proteins that are essential in early development []. P16642 from SWISSPROT and P16643 from SWISSPROT are located on the cell surface and mediate cell-cell adhesion.; GO: 0007155 cell adhesion
Probab=37.77 E-value=86 Score=26.14 Aligned_cols=45 Identities=29% Similarity=0.530 Sum_probs=32.9
Q ss_pred eeeeecceeEEEeeeecccCCCC---CceEEEEECCeEeecCCCCCceeEeCC
Q 039782 144 LGILFQSHSFSLEAAKAATWDNE---IDHLKFSYNGQDLVIPEGPLSIWYSEE 193 (340)
Q Consensus 144 lgi~F~~H~l~i~A~k~~~Wd~~---vD~l~vt~dGe~v~ip~~~~a~W~s~~ 193 (340)
+.|+| +...++- .-|+.+ +..-+|.+|||..+||.+.+..|+..+
T Consensus 27 ~~~rf--~~ykteG---plw~~~~F~v~S~kiE~~Gq~ydiPss~~~~~~~~d 74 (82)
T PF05720_consen 27 YFIRF--IQYKTEG---PLWNNNEFKVNSGKIERNGQEYDIPSSRGSSWRDDD 74 (82)
T ss_pred eEEEE--EEeEecc---CcccccceEeeeeeEEECCEEeeCCcccCceeeccC
Confidence 45566 3344444 358764 477899999999999999999999643
No 17
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=36.58 E-value=1.1e+02 Score=25.39 Aligned_cols=61 Identities=11% Similarity=0.310 Sum_probs=39.0
Q ss_pred CCCCceeeecCCcceeeeEEeecCCCCCCCCceeEEeeeeeecceeEEEeeeecccCCCCCceEEEEEC
Q 039782 107 KSNEHFSLVSDSELQINARFIGHRPAGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDHLKFSYN 175 (340)
Q Consensus 107 kkd~~FcivSD~~LhINAHFIG~r~~g~~RDfTWiQalgi~F~~H~l~i~A~k~~~Wd~~vD~l~vt~d 175 (340)
+.+..+--.-..++.||-..||...+| .|.|++ +.-+.|+|.....-...| ....|.|+++
T Consensus 32 R~~~~~g~~~~~~v~vdg~~ig~l~~g---~y~~~~---v~pG~h~i~~~~~~~~~~--~~~~l~~~~~ 92 (117)
T PF11008_consen 32 RPSSFFGSAVKPDVYVDGELIGELKNG---GYFYVE---VPPGKHTISAKSEFSSSP--GANSLDVTVE 92 (117)
T ss_pred EECCccCccccceEEECCEEEEEeCCC---eEEEEE---ECCCcEEEEEecCccCCC--CccEEEEEEc
Confidence 445555447788999999999997554 677765 344678887733322222 4555555554
No 18
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=35.93 E-value=26 Score=27.73 Aligned_cols=18 Identities=17% Similarity=0.532 Sum_probs=14.7
Q ss_pred ceEEEEECCeEeecCCCC
Q 039782 168 DHLKFSYNGQDLVIPEGP 185 (340)
Q Consensus 168 D~l~vt~dGe~v~ip~~~ 185 (340)
+.++|+|||+++..+++.
T Consensus 2 ~~v~i~idG~~v~~~~G~ 19 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPGE 19 (82)
T ss_dssp EEEEEEETTEEEEEEET-
T ss_pred CEEEEEECCEEEEEcCCC
Confidence 468999999999998754
No 19
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=35.05 E-value=44 Score=27.75 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=24.5
Q ss_pred eEEEEECCeEeecCCCCCceeEeCCCCeE---EEEEcCCCeEEEEe
Q 039782 169 HLKFSYNGQDLVIPEGPLSIWYSEEKDVK---VERVSSKNSAIVSL 211 (340)
Q Consensus 169 ~l~vt~dGe~v~ip~~~~a~W~s~~~~l~---V~Rt~~~N~V~V~l 211 (340)
.|+|-+-|+.|. .++++...|+++ |+|+++.|.+.|.|
T Consensus 15 ~LQLmvyG~nI~-----~~~v~i~~~gV~i~~v~~~~npNYLFv~L 55 (88)
T PF09087_consen 15 ELQLMVYGKNIA-----SAEVSISYPGVTIKKVVKTDNPNYLFVYL 55 (88)
T ss_dssp EEEEEEESTTGG-----GSEEEE-BTTEEEEEEEE-SSTTEEEEEE
T ss_pred cEEEEEecCCcc-----cCEEEEeCCCeEEEEEEecCCCCEEEEEE
Confidence 456666666555 345554445655 48899999999998
No 20
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=34.17 E-value=2.2e+02 Score=21.92 Aligned_cols=67 Identities=18% Similarity=0.397 Sum_probs=40.7
Q ss_pred cCCceEEEecCCCCceeeecCCcceeeeEE-ee------cCCCCCCCCceeEEeeeeeecceeEEEeeeecccCCCCCce
Q 039782 97 GDGIVFYFHGKSNEHFSLVSDSELQINARF-IG------HRPAGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDH 169 (340)
Q Consensus 97 GDG~~FYFHGkkd~~FcivSD~~LhINAHF-IG------~r~~g~~RDfTWiQalgi~F~~H~l~i~A~k~~~Wd~~vD~ 169 (340)
.||+-||-..+...+|-.|.=.+=++-.++ +| ...+..--|..| |++.|... -.+
T Consensus 6 ~~g~Ll~~~~~~~~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~~dg~w----------h~v~i~~~--------~~~ 67 (128)
T PF02210_consen 6 PNGLLLYIGSEDNGDFLSLELVDGRLVVRYNLGGSEIVTTFSNSNLNDGQW----------HKVSISRD--------GNR 67 (128)
T ss_dssp SSEEEEEEEESTTSEEEEEEEETTEEEEEEESSSSEEEEEECSSSSTSSSE----------EEEEEEEE--------TTE
T ss_pred CCEeEEEEcCCCCCEEEEEEEECCEEEEEEEccccceeeeccCccccccce----------eEEEEEEe--------eee
Confidence 478888888888855554432233344444 33 111223345556 88888777 555
Q ss_pred EEEEECCeEeec
Q 039782 170 LKFSYNGQDLVI 181 (340)
Q Consensus 170 l~vt~dGe~v~i 181 (340)
++|++|+++...
T Consensus 68 ~~l~Vd~~~~~~ 79 (128)
T PF02210_consen 68 VTLTVDGQSVSS 79 (128)
T ss_dssp EEEEETTSEEEE
T ss_pred EEEEecCccceE
Confidence 999999887765
No 21
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=30.83 E-value=1e+02 Score=25.88 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=34.2
Q ss_pred eeEeC--CCCeEEEEEcCCCeEEEEecc--cEEEEEEEEeccccCCcccccCCCCCCccceeeeeeEEeccCccccccc
Q 039782 188 IWYSE--EKDVKVERVSSKNSAIVSLKD--TAEILVNVVPVTKEDDRVHKYQVPADDCFAHLEVQFRFFNLSAKVDGVL 262 (340)
Q Consensus 188 ~W~s~--~~~l~V~Rt~~~N~V~V~l~g--~~~i~~~VVPit~eDsriHnYg~~~dD~faHLel~FKF~~Lsd~V~GVL 262 (340)
+|+|. .|.+.|.|.+..=.|.++-.. .=++.-..-||.++|.. --.+++|+..=--|....+|
T Consensus 18 ~W~Sv~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~------------~fI~~g~ri~l~Yd~~~D~L 84 (95)
T PF12992_consen 18 EWESVNGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGN------------LFIETGFRIDLAYDEEKDVL 84 (95)
T ss_pred EeEccCCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCE------------EEEecCcEEEEEEcccCCEE
Confidence 79995 499999999555444443322 12223333444444443 34456664443345555555
No 22
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=29.13 E-value=3.7e+02 Score=27.99 Aligned_cols=51 Identities=20% Similarity=0.400 Sum_probs=29.6
Q ss_pred cCCCCCCCCCC-CCCCCCeeEEecCCCCCccccccccccCCCCCCcccCCeeeccCCc
Q 039782 44 ECPFECPNTES-DDPKAKVCYVNCDHPTCKPQCKHRIANCDSPGSACYDPRFIGGDGI 100 (340)
Q Consensus 44 ~CP~~Cp~~~~-~~~k~~~C~vdC~s~~Ck~~C~~rk~~Cd~pGs~C~DPRFiGGDG~ 100 (340)
.|-..||..-. .+.+...|. .| ..|...|..-...+..| -+--||+-++..
T Consensus 238 ~Cv~vCP~gi~~~~~~~~~Ci-~C--g~CidaCp~a~~~~g~~---~~li~~~~~~~~ 289 (434)
T TIGR02745 238 LCVQVCPTGIDIRDGLQLECI-NC--GLCIDACDDVMEKMGKP---KGLISYTSEAAL 289 (434)
T ss_pred hhHHhCCCCCEeCCCCchhCh-hh--hHHHHhCCChHHhcCCC---cCCceeecchhc
Confidence 57777776522 345566784 68 78999995433333333 223466666544
No 23
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.01 E-value=4e+02 Score=23.11 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=45.1
Q ss_pred CCCCCceeEEeeeeeecceeEEEeeeecccCCCCCceEEEEEC-------CeEeecCCCCCceeEeCCCCeEEEE---Ec
Q 039782 133 GRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDHLKFSYN-------GQDLVIPEGPLSIWYSEEKDVKVER---VS 202 (340)
Q Consensus 133 g~~RDfTWiQalgi~F~~H~l~i~A~k~~~Wd~~vD~l~vt~d-------Ge~v~ip~~~~a~W~s~~~~l~V~R---t~ 202 (340)
+++|=||++=.=..--+=-+|.|....--.|--+-+.+.+..- |++|.| ..+.|......|+|.= ..
T Consensus 24 ~~~~y~~~~~p~~~~~~L~~l~I~~p~~~~~~~~~~~i~v~~~~~g~~~~g~~ipl---~~v~~~~~~~~i~I~f~~PV~ 100 (146)
T PF10989_consen 24 GATYYFTIIVPQDAGEALQKLTISQPDGFDGSIDFDKIQVRAFSLGPRRRGESIPL---AEVEWDEDGRTITITFDEPVP 100 (146)
T ss_pred cceEEEEEEccccCCCcceeEEEEccccccccccCCcceEEEEeccCcccCCccCc---eEEEEcCCCCEEEEEeCCCCC
Confidence 5555566543212112234555555444444222222222222 666653 2335555445566632 24
Q ss_pred CCCeEEEEe--------cccEEEEEEEEeccc
Q 039782 203 SKNSAIVSL--------KDTAEILVNVVPVTK 226 (340)
Q Consensus 203 ~~N~V~V~l--------~g~~~i~~~VVPit~ 226 (340)
..+.|.|.+ .|.....+.+-|.++
T Consensus 101 pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~ 132 (146)
T PF10989_consen 101 PGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGD 132 (146)
T ss_pred CCCEEEEEEEeeeCCCCCCeEEEEEEEECCCC
Confidence 566777776 367788888888754
No 24
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=27.63 E-value=48 Score=24.34 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=13.1
Q ss_pred EEEEECCeEeecCCC
Q 039782 170 LKFSYNGQDLVIPEG 184 (340)
Q Consensus 170 l~vt~dGe~v~ip~~ 184 (340)
++|++||+++.+|++
T Consensus 1 m~i~vNg~~~~~~~~ 15 (65)
T PRK06944 1 MDIQLNQQTLSLPDG 15 (65)
T ss_pred CEEEECCEEEECCCC
Confidence 479999999999875
No 25
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=27.48 E-value=51 Score=24.34 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=13.1
Q ss_pred EEEEECCeEeecCCC
Q 039782 170 LKFSYNGQDLVIPEG 184 (340)
Q Consensus 170 l~vt~dGe~v~ip~~ 184 (340)
++|++||+++.+|++
T Consensus 1 m~i~vNG~~~~~~~~ 15 (66)
T PRK05659 1 MNIQLNGEPRELPDG 15 (66)
T ss_pred CEEEECCeEEEcCCC
Confidence 479999999999875
No 26
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=26.70 E-value=32 Score=28.08 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=23.2
Q ss_pred Ceee-ccCCceEEEecCCCCceeeecCCcceeeeEEe
Q 039782 92 PRFI-GGDGIVFYFHGKSNEHFSLVSDSELQINARFI 127 (340)
Q Consensus 92 PRFi-GGDG~~FYFHGkkd~~FcivSD~~LhINAHFI 127 (340)
|+|- +.|-++|+|-| |+|.|.-|-||.+|+
T Consensus 7 psFc~~~~t~~~~~~G------C~V~~nklyvng~~~ 37 (76)
T PF06394_consen 7 PSFCTINDTTQYGFDG------CVVQNNKLYVNGKYA 37 (76)
T ss_dssp -GGG--TT-EEEEETT------EEEETTEEEETTCEE
T ss_pred CCccccccceeEeeee------eEEECCEEEECCEee
Confidence 4453 44667899988 999999999999999
No 27
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=26.14 E-value=2.6e+02 Score=23.22 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=16.1
Q ss_pred eEEEEECCeEeec--CCCCCceeEeC
Q 039782 169 HLKFSYNGQDLVI--PEGPLSIWYSE 192 (340)
Q Consensus 169 ~l~vt~dGe~v~i--p~~~~a~W~s~ 192 (340)
.+.+++||.++.. .+|....+-++
T Consensus 18 ~v~~~Ing~~~~~LvDTGAs~s~Is~ 43 (124)
T cd05479 18 YINVEINGVPVKAFVDSGAQMTIMSK 43 (124)
T ss_pred EEEEEECCEEEEEEEeCCCceEEeCH
Confidence 4567889999874 44555566664
No 28
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=25.88 E-value=65 Score=24.79 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.7
Q ss_pred CceEEEEECCeEeecCCCC
Q 039782 167 IDHLKFSYNGQDLVIPEGP 185 (340)
Q Consensus 167 vD~l~vt~dGe~v~ip~~~ 185 (340)
...++|++||+++.++...
T Consensus 47 a~~v~v~~nG~~~~~~~~~ 65 (77)
T PF13464_consen 47 AGAVEVTVNGKPVDLLGPP 65 (77)
T ss_pred CCcEEEEECCEECCCCCCC
Confidence 5788999999999996543
No 29
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=25.56 E-value=3e+02 Score=26.81 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=20.1
Q ss_pred EecCCCCceeeecCCcceeee
Q 039782 104 FHGKSNEHFSLVSDSELQINA 124 (340)
Q Consensus 104 FHGkkd~~FcivSD~~LhINA 124 (340)
.||++|+.-.|-|+.|+.|||
T Consensus 74 I~s~~d~~l~i~s~~~v~~~~ 94 (264)
T PF04790_consen 74 IHSFRDSPLVIQSSRNVTLNA 94 (264)
T ss_pred eeeecCCCEEEEecCceEEEE
Confidence 589999999999999999999
No 30
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=24.82 E-value=2e+02 Score=22.27 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=30.3
Q ss_pred EEEEECCeEeecCCCCCce--eEeCC-------CCeE--EEEEcCCCeEEEEecccEEEEEEEE
Q 039782 170 LKFSYNGQDLVIPEGPLSI--WYSEE-------KDVK--VERVSSKNSAIVSLKDTAEILVNVV 222 (340)
Q Consensus 170 l~vt~dGe~v~ip~~~~a~--W~s~~-------~~l~--V~Rt~~~N~V~V~l~g~~~i~~~VV 222 (340)
+++.+||+++.+-=++||. +-|.+ +.+. -.+...+|+-.+++.|.+++.+.+-
T Consensus 3 ~~~~Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~~~G~~~~~v~~~ 66 (91)
T cd05484 3 VTLLVNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLSVLGQILVTVKYG 66 (91)
T ss_pred EEEEECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEeeEeEEEEEEEEEC
Confidence 6789999999987777773 33310 1011 1223336666667777765555443
No 31
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=24.31 E-value=1.7e+02 Score=24.21 Aligned_cols=54 Identities=26% Similarity=0.385 Sum_probs=38.2
Q ss_pred CCcceeeeEEeec---CCCCCCCCceeEEee---eeee---cceeEEEeeeecccCCCCCceEEEEECCeEee
Q 039782 117 DSELQINARFIGH---RPAGRSRDFTWIQAL---GILF---QSHSFSLEAAKAATWDNEIDHLKFSYNGQDLV 180 (340)
Q Consensus 117 D~~LhINAHFIG~---r~~g~~RDfTWiQal---gi~F---~~H~l~i~A~k~~~Wd~~vD~l~vt~dGe~v~ 180 (340)
|--||+|.+|-.. || ......|-+.- +..| ....|.|.+. .|+..|.+||.++.
T Consensus 39 ~i~lH~n~rf~~~~IV~N--s~~~g~Wg~Eer~~~~pf~~g~~F~l~i~~~--------~~~f~i~vng~~~~ 101 (127)
T cd00070 39 DIALHFNPRFDENVIVRN--SFLNGNWGPEERSGGFPFQPGQPFELTILVE--------EDKFQIFVNGQHFF 101 (127)
T ss_pred CEEEEEeeeCCCCEEEEc--CCCCCEecHhhccCCCCCCCCCeEEEEEEEc--------CCEEEEEECCEeEE
Confidence 7789999999642 33 22334786554 3444 4667888887 89999999999775
No 32
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=23.89 E-value=1.5e+02 Score=21.94 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=14.8
Q ss_pred eEEEEECCeEeec--CCCCCceeEe
Q 039782 169 HLKFSYNGQDLVI--PEGPLSIWYS 191 (340)
Q Consensus 169 ~l~vt~dGe~v~i--p~~~~a~W~s 191 (340)
.+.+++||+++.+ .++....|-+
T Consensus 4 ~v~v~i~~~~~~~llDTGa~~s~i~ 28 (96)
T cd05483 4 VVPVTINGQPVRFLLDTGASTTVIS 28 (96)
T ss_pred EEEEEECCEEEEEEEECCCCcEEcC
Confidence 3577888988875 4444445555
No 33
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=23.86 E-value=1.3e+02 Score=30.45 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=46.0
Q ss_pred ceEEEEECCeEeecCCCCCc-eeEeCC-CCeEEEEEcCCCeEEEEecccEEEEEEEEe------ccccCCcccccCCCCC
Q 039782 168 DHLKFSYNGQDLVIPEGPLS-IWYSEE-KDVKVERVSSKNSAIVSLKDTAEILVNVVP------VTKEDDRVHKYQVPAD 239 (340)
Q Consensus 168 D~l~vt~dGe~v~ip~~~~a-~W~s~~-~~l~V~Rt~~~N~V~V~l~g~~~i~~~VVP------it~eDsriHnYg~~~d 239 (340)
.+|+++=||+-|-|-+..+- .|-.+- ..+.=+++...|. +.+-++|.-+| .+..|++||-|
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~------~~~~~~a~ftPds~Fvl~gs~dg~i~vw----- 259 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA------GNLPLSATFTPDSKFVLSGSDDGTIHVW----- 259 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC------CCcceeEEECCCCcEEEEecCCCcEEEE-----
Confidence 35777777777777553332 233332 2233345545554 34445666666 47889999999
Q ss_pred CccceeeeeeEEeccCc
Q 039782 240 DCFAHLEVQFRFFNLSA 256 (340)
Q Consensus 240 D~faHLel~FKF~~Lsd 256 (340)
||+.++|+..+..
T Consensus 260 ----~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 260 ----NLETGKKVAVLRG 272 (311)
T ss_pred ----EcCCCcEeeEecC
Confidence 6688999988744
No 34
>PRK00407 hypothetical protein; Provisional
Probab=23.83 E-value=95 Score=27.16 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=46.3
Q ss_pred ceeEEeeeeeecceeEEEeeeecccCCCCCceEEEEECCeEeecCCC-CCceeEeCC-CCeEEEEEcCCCeEEEE
Q 039782 138 FTWIQALGILFQSHSFSLEAAKAATWDNEIDHLKFSYNGQDLVIPEG-PLSIWYSEE-KDVKVERVSSKNSAIVS 210 (340)
Q Consensus 138 fTWiQalgi~F~~H~l~i~A~k~~~Wd~~vD~l~vt~dGe~v~ip~~-~~a~W~s~~-~~l~V~Rt~~~N~V~V~ 210 (340)
|.|++.|=.+|+.+.+....-++.. +.+.-+|.-+.=||+++.... .+.+-.... .+|.|++++..-.+.|-
T Consensus 63 ~~~L~ElL~~~~~~~~~~~~~~v~i-~~~~~~l~a~~~Ge~~d~~~H~~~~eVKAvTyh~l~i~~~~~~~~~~vi 136 (139)
T PRK00407 63 YRWLEELLYYYDSEGLVFSKFDVKI-DEDDMTLKAKAWGEKFDPEIHERRTVVKAMTYHDMEIEKEDGCWMAQFV 136 (139)
T ss_pred HHHHHHHHHHhccceEEEEEEEEEE-cCCceEEEEEEEeeecCcccccCCceEEEeecccEEEEEcCCeEEEEEE
Confidence 5688888777888877766665554 445578888899999987543 233322221 47899887444444443
No 35
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=23.34 E-value=5.7e+02 Score=24.45 Aligned_cols=76 Identities=18% Similarity=0.334 Sum_probs=48.9
Q ss_pred ecccCCCCCceEEEEECCeEeecCCCC------------CceeEeC---CCCeEEEEEcCCC---------eEEEEec--
Q 039782 159 KAATWDNEIDHLKFSYNGQDLVIPEGP------------LSIWYSE---EKDVKVERVSSKN---------SAIVSLK-- 212 (340)
Q Consensus 159 k~~~Wd~~vD~l~vt~dGe~v~ip~~~------------~a~W~s~---~~~l~V~Rt~~~N---------~V~V~l~-- 212 (340)
...-|-.-+..-++++||+...||..+ ...|+-. +..++++...... .|+.+|.
T Consensus 58 ~L~P~anRI~~g~f~~~G~~y~L~~N~~~~~~~lHG~~~~~~W~v~~~~~~~v~l~~~~~~~~gyP~~~~~~v~y~L~~~ 137 (300)
T PRK15172 58 VLIPWPNRIANGCYRYQGQEYQLPINEHVSKAAIHGLLAWRDWQISELTATSVTLTAFLPPSYGYPFMLASQVIYSLDAA 137 (300)
T ss_pred EecccCCeecCCEEEECCEEEECCCCCCCCCcccCCCccCceEEEEEecCCEEEEEEEcCCCCCCCEEEEEEEEEEEccC
Confidence 456677778888899999999998543 2257642 2345555443221 3666674
Q ss_pred ccEEEEEEEEeccccCCc----cccc
Q 039782 213 DTAEILVNVVPVTKEDDR----VHKY 234 (340)
Q Consensus 213 g~~~i~~~VVPit~eDsr----iHnY 234 (340)
+.++|+..|+-..+++-. .|-|
T Consensus 138 ~~L~i~~~~~n~~~~~~P~~~g~HpY 163 (300)
T PRK15172 138 TGLSVEIASQNIGDVPAPYGVGIHPY 163 (300)
T ss_pred CeEEEEEEEEECCCCceeeEEecCce
Confidence 468888888776666555 5777
No 36
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=21.69 E-value=4e+02 Score=21.98 Aligned_cols=64 Identities=20% Similarity=0.490 Sum_probs=0.0
Q ss_pred CCceEEEecCCCCceeeecCCcceeeeEE-eecCC-----CCCCCCceeEEeeeeeecceeEEEeeeecccCCCCCceEE
Q 039782 98 DGIVFYFHGKSNEHFSLVSDSELQINARF-IGHRP-----AGRSRDFTWIQALGILFQSHSFSLEAAKAATWDNEIDHLK 171 (340)
Q Consensus 98 DG~~FYFHGkkd~~FcivSD~~LhINAHF-IG~r~-----~g~~RDfTWiQalgi~F~~H~l~i~A~k~~~Wd~~vD~l~ 171 (340)
||+.||-=.+...||..+.=.+=++--++ .|..+ +..-=|..| |++.+.-. -..+.
T Consensus 7 ~Gllly~g~~~~~dfial~L~~G~l~~~~~~G~~~~~~~~~~~i~dg~w----------h~v~~~r~--------~~~~~ 68 (131)
T PF00054_consen 7 NGLLLYLGSKDGKDFIALELRDGRLEFRYNLGSGPASLRSPQKINDGKW----------HTVSVSRN--------GRNGS 68 (131)
T ss_dssp SEEEEEEESSTTSSEEEEEEETTEEEEEEESSSEEEEEEESSETTSSSE----------EEEEEEEE--------TTEEE
T ss_pred CceEEECCcCCCCCEEEEEEECCEEEEEEeCCCccceecCCCccCCCcc----------eEEEEEEc--------CcEEE
Q ss_pred EEECCeEe
Q 039782 172 FSYNGQDL 179 (340)
Q Consensus 172 vt~dGe~v 179 (340)
|++||+..
T Consensus 69 L~Vd~~~~ 76 (131)
T PF00054_consen 69 LSVDGEEV 76 (131)
T ss_dssp EEETTSEE
T ss_pred EEECCccc
No 37
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=21.63 E-value=48 Score=33.72 Aligned_cols=43 Identities=30% Similarity=0.559 Sum_probs=36.3
Q ss_pred CCccceeeeeeEEeccCcccccccceeccCCCcccCCCCc-----cceeecCCCccccc
Q 039782 239 DDCFAHLEVQFRFFNLSAKVDGVLGRTYRPDFENPAKPGV-----AMAVLGGEKEYKTE 292 (340)
Q Consensus 239 dD~faHLel~FKF~~Lsd~V~GVLGQTYRpdyvn~vk~gv-----~MPvmGGe~~Y~tS 292 (340)
=-|+|.|+-.+.|..+ ++|.|++++.+-- .|-+..|+++|.|.
T Consensus 122 fSCLatl~~~~SF~P~-----------WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa 169 (335)
T TIGR03032 122 FSCLATVSPDYSFVPL-----------WKPPFISKLAPEDRCHLNGMALDDGEPRYVTA 169 (335)
T ss_pred ceeEEEECCCCccccc-----------cCCccccccCccCceeecceeeeCCeEEEEEE
Confidence 3599999999999987 9999999988832 45668999999985
No 38
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=20.53 E-value=4.1e+02 Score=26.33 Aligned_cols=85 Identities=20% Similarity=0.422 Sum_probs=51.0
Q ss_pred cCCeeeccCCceEEEecCCCCceeeecCCccee-----e------------eEEeecCCCCCCCCceeEEeeeeee---c
Q 039782 90 YDPRFIGGDGIVFYFHGKSNEHFSLVSDSELQI-----N------------ARFIGHRPAGRSRDFTWIQALGILF---Q 149 (340)
Q Consensus 90 ~DPRFiGGDG~~FYFHGkkd~~FcivSD~~LhI-----N------------AHFIG~r~~g~~RDfTWiQalgi~F---~ 149 (340)
|||++||=-|+.|+ ++.++ ..-|+-.++.+ | .+.|.-++.......-|. +.| .
T Consensus 9 G~~~~iGLTgie~~--d~~~~-~i~i~~~~i~~~p~Din~~p~~~~d~r~l~~Lidg~~~T~d~~~MWl----~pf~~~~ 81 (329)
T PF14652_consen 9 GDPHYIGLTGIEVL--DKNGQ-KIPISPSQISASPRDINDLPGYSDDPRTLDKLIDGVNLTTDDEHMWL----APFSPGK 81 (329)
T ss_pred CCCCeEecceEEEE--cCCCC-EeeccHHHeEEcccccccccccCCCccceeEEECCeEccCcccceEE----eecCCCC
Confidence 79999999999997 55444 22222222222 1 334555556667778887 222 3
Q ss_pred ceeEEEeeee------cccCCCC---------CceEEEEECCeEeec
Q 039782 150 SHSFSLEAAK------AATWDNE---------IDHLKFSYNGQDLVI 181 (340)
Q Consensus 150 ~H~l~i~A~k------~~~Wd~~---------vD~l~vt~dGe~v~i 181 (340)
.|.|+|.-.+ .--|+.+ |..++|.+||..|.-
T Consensus 82 ~~~i~i~f~~~~~is~iRIWNYNks~~ds~~GvK~v~I~ldg~~i~~ 128 (329)
T PF14652_consen 82 QHVITIRFPEPTSISGIRIWNYNKSREDSYRGVKDVKIYLDGKLIFP 128 (329)
T ss_pred CEEEEEEeCCCceeeEEEEEcCCCCcchhhcCeEEEEEEECCEEeec
Confidence 4445444322 2246632 568999999999864
Done!