Query 039784
Match_columns 88
No_of_seqs 102 out of 203
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 22:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b7j_A Neuraminidase; hydrolas 38.6 9.7 0.00033 31.6 1.0 16 62-77 269-284 (469)
2 2htq_A Neuraminidase; zanamivi 38.4 12 0.00042 30.4 1.6 17 62-78 187-203 (390)
3 1xu2_R Tumor necrosis factor r 33.5 14 0.00047 22.0 0.8 19 34-52 20-38 (47)
4 1v0z_A Neuraminidase; glycosid 32.6 9.3 0.00032 31.1 -0.0 17 62-78 188-204 (389)
5 1f8d_A Neuraminidase; hydrolas 32.1 9.6 0.00033 31.0 -0.0 17 62-78 188-204 (388)
6 3tia_A Neuraminidase; 6-bladed 30.0 11 0.00036 31.4 -0.1 16 62-77 268-283 (469)
7 2h9e_C Anti-coagulant protein 29.3 4.5 0.00015 25.4 -1.9 50 28-81 13-79 (84)
8 1nmb_N N9 neuraminidase; compl 29.1 16 0.00056 30.3 0.9 17 62-78 270-286 (470)
9 4gdi_A Neuraminidase; influenz 27.9 12 0.0004 30.3 -0.2 17 62-78 190-206 (373)
10 3b7e_A Neuraminidase; 6-bladed 27.7 13 0.00044 30.2 0.0 17 62-78 187-203 (385)
11 3sal_A Neuraminidase; 6-bladed 26.3 12 0.0004 30.6 -0.4 18 61-78 187-204 (395)
12 3tje_F Tumor necrosis factor r 25.7 24 0.00081 24.3 1.1 23 52-77 41-72 (156)
13 1nsc_A Neuraminidase; hydrolas 21.1 12 0.00042 30.4 -1.3 14 62-75 191-204 (390)
14 3qd6_R CD40L receptor, tumor n 20.8 48 0.0017 22.6 1.9 26 52-80 15-48 (177)
No 1
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=38.60 E-value=9.7 Score=31.60 Aligned_cols=16 Identities=38% Similarity=0.810 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCcccc
Q 039784 62 PSGTYGHKDECPCYRD 77 (88)
Q Consensus 62 P~Gtygnk~~CpCY~~ 77 (88)
++|+..|.|||.||.+
T Consensus 269 l~gs~~HiEECSCY~~ 284 (469)
T 4b7j_A 269 MNAPNYHYEECSCYPD 284 (469)
T ss_dssp CCCTTCCCCSCEEEEE
T ss_pred cCCCcccceeeeeccC
Confidence 4688888899998876
No 2
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=38.36 E-value=12 Score=30.36 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCccccc
Q 039784 62 PSGTYGHKDECPCYRDL 78 (88)
Q Consensus 62 P~Gtygnk~~CpCY~~m 78 (88)
.+|+..|.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46889999999999765
No 3
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=33.48 E-value=14 Score=21.98 Aligned_cols=19 Identities=37% Similarity=0.997 Sum_probs=16.2
Q ss_pred hhHHHhhcCcchHHHHHHh
Q 039784 34 CAVRCSKAGREDRCLKYCG 52 (88)
Q Consensus 34 C~~RCs~~~~~~~C~~~C~ 52 (88)
|..||+.+..+..|-.||.
T Consensus 20 C~l~Cs~~~~p~tC~~fC~ 38 (47)
T 1xu2_R 20 CQLRCSSNTPPLTCQRYCN 38 (47)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred hhcccCCCCCcchHHHHHh
Confidence 8889997777888999986
No 4
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=32.57 E-value=9.3 Score=31.06 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCccccc
Q 039784 62 PSGTYGHKDECPCYRDL 78 (88)
Q Consensus 62 P~Gtygnk~~CpCY~~m 78 (88)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 47889999999999775
No 5
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=32.08 E-value=9.6 Score=30.98 Aligned_cols=17 Identities=41% Similarity=0.892 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCccccc
Q 039784 62 PSGTYGHKDECPCYRDL 78 (88)
Q Consensus 62 P~Gtygnk~~CpCY~~m 78 (88)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 47889999999999765
No 6
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding, glycosylation, ANT hydrolase-hydrolase inhibitor complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus} PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A* 1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A* 2aep_A* 2aeq_A* 4gzq_A* 4gzo_A* 4gzp_A* 4gzt_A* 4gzs_A* ...
Probab=29.97 E-value=11 Score=31.37 Aligned_cols=16 Identities=44% Similarity=0.937 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCcccc
Q 039784 62 PSGTYGHKDECPCYRD 77 (88)
Q Consensus 62 P~Gtygnk~~CpCY~~ 77 (88)
.+|+.+|.|||.||-+
T Consensus 268 l~~~~~HiEECSCYp~ 283 (469)
T 3tia_A 268 LSGSAQHIEECSCYPR 283 (469)
T ss_dssp CCSSCCCCEEEEEEEE
T ss_pred cCCCCccceeeeecCC
Confidence 4566677777777754
No 7
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=29.31 E-value=4.5 Score=25.36 Aligned_cols=50 Identities=26% Similarity=0.620 Sum_probs=21.1
Q ss_pred CCChH-HhhHHHhhc-------Cc-chHH-HHHHhHhhccccccCCCCCCCC-------CCCCcccccccC
Q 039784 28 DFCDS-KCAVRCSKA-------GR-EDRC-LKYCGICCDKCHCVPSGTYGHK-------DECPCYRDLKNS 81 (88)
Q Consensus 28 ~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~~C~CVP~Gtygnk-------~~CpCY~~m~t~ 81 (88)
.+|++ +|...|+.. .+ ...| .+.|. .-|.|.+ |.+-|. ++|||+.+-...
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~~-G~vr~~~g~CV~~~~Cpc~~~~~~y 79 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCEE-GFYRNKDDKCVSAEDCELDNMDFIY 79 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEECS-SCEECTTCCEECHHHHGGGGEEEEC
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCCC-CeEEcCCCCEECHHHCCCCcCCeEC
Confidence 57888 999999853 11 3578 56665 6788854 888773 568887654433
No 8
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN; 2.20A {Influenza a virus} SCOP: b.68.1.1
Probab=29.15 E-value=16 Score=30.31 Aligned_cols=17 Identities=41% Similarity=0.911 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCccccc
Q 039784 62 PSGTYGHKDECPCYRDL 78 (88)
Q Consensus 62 P~Gtygnk~~CpCY~~m 78 (88)
.+|+..|.|||.||-+.
T Consensus 270 l~~~~~HiEECscy~~~ 286 (470)
T 1nmb_N 270 LTGTAKHIEECSCYGEQ 286 (470)
T ss_dssp CCSSCSCCCSCEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 36777888888888654
No 9
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=27.86 E-value=12 Score=30.32 Aligned_cols=17 Identities=18% Similarity=0.040 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCccccc
Q 039784 62 PSGTYGHKDECPCYRDL 78 (88)
Q Consensus 62 P~Gtygnk~~CpCY~~m 78 (88)
.+|+..|.|||.||.+.
T Consensus 190 l~~s~~HiEECSCYp~~ 206 (373)
T 4gdi_A 190 LNTTGINFEYSTCYTIN 206 (373)
T ss_dssp CCCTTCCCEEEEEEEET
T ss_pred cCCCCCCceeeeecCCC
Confidence 36888999999999653
No 10
>3b7e_A Neuraminidase; 6-bladed beta-propeller, glycosidase, hydrolase, membrane, transmembrane, virion; HET: NAG FUC ZMR; 1.45A {Influenza a virus} PDB: 3beq_A* 3cye_A* 2hty_A* 2hu0_A* 2hu4_A* 3cl2_A* 3ckz_A* 3cl0_A* 3ti4_A* 3nss_A* 3ti3_A* 3ti5_A* 3ti6_A* 2htv_A* 2htw_A*
Probab=27.71 E-value=13 Score=30.22 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCccccc
Q 039784 62 PSGTYGHKDECPCYRDL 78 (88)
Q Consensus 62 P~Gtygnk~~CpCY~~m 78 (88)
.+|+..|.|||.||-+.
T Consensus 187 l~gs~~HiEECSCYp~~ 203 (385)
T 3b7e_A 187 LNAPNYHYEECSCYPDT 203 (385)
T ss_dssp CCCTTCCCEEEEEEEET
T ss_pred cCCCccceEeeeEecCC
Confidence 47889999999999765
No 11
>3sal_A Neuraminidase; 6-bladed beta-propeller, hydrolase, calcium binding, glycosy; HET: NAG BMA; 1.50A {Influenza a virus} PDB: 3san_A* 3ti8_A* 4gb1_A* 3o9j_A* 3o9k_A*
Probab=26.31 E-value=12 Score=30.55 Aligned_cols=18 Identities=44% Similarity=0.789 Sum_probs=14.6
Q ss_pred cCCCCCCCCCCCCccccc
Q 039784 61 VPSGTYGHKDECPCYRDL 78 (88)
Q Consensus 61 VP~Gtygnk~~CpCY~~m 78 (88)
.++|..+|.|||.||-+.
T Consensus 187 ~l~~~~qHiEECSCYp~~ 204 (395)
T 3sal_A 187 EVSFQGGHIEECSCYPNL 204 (395)
T ss_dssp EECCTTCCCEEEEEEEET
T ss_pred ecCCCCccceeeeecCCC
Confidence 357888999999999663
No 12
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=25.67 E-value=24 Score=24.32 Aligned_cols=23 Identities=30% Similarity=0.941 Sum_probs=14.7
Q ss_pred hHhhccccccCCCCCCC--------CCCC-Ccccc
Q 039784 52 GICCDKCHCVPSGTYGH--------KDEC-PCYRD 77 (88)
Q Consensus 52 ~~CC~~C~CVP~Gtygn--------k~~C-pCY~~ 77 (88)
+.||.+| |||||=. .-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 4567777 6888732 3567 67665
No 13
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} SCOP: b.68.1.1 PDB: 1a4g_A* 1nsb_A* 1a4q_A* 1nsd_A* 3k37_A* 3k36_A* 3k38_A* 3k39_A* 3k3a_A* 1b9v_A* 1b9s_A* 1b9t_A* 1inv_A* 1ivb_A* 1inf_A* 1vcj_A*
Probab=21.13 E-value=12 Score=30.37 Aligned_cols=14 Identities=43% Similarity=1.073 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCcc
Q 039784 62 PSGTYGHKDECPCY 75 (88)
Q Consensus 62 P~Gtygnk~~CpCY 75 (88)
.+|+..|.|||.||
T Consensus 191 lsgsaqHiEECSCY 204 (390)
T 1nsc_A 191 PTGRVEHTEECTCG 204 (390)
T ss_dssp CEESCSBCEEEEEE
T ss_pred cCCCccceEeeeec
Confidence 46888999999999
No 14
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=20.78 E-value=48 Score=22.64 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=16.2
Q ss_pred hHhhccccccCCCCCCC-------CCCC-Cccccccc
Q 039784 52 GICCDKCHCVPSGTYGH-------KDEC-PCYRDLKN 80 (88)
Q Consensus 52 ~~CC~~C~CVP~Gtygn-------k~~C-pCY~~m~t 80 (88)
|.||.+| |+|+|=. .-+| ||-.+..+
T Consensus 15 ~~CC~~C---ppG~~~~~~C~~~~~t~C~pC~~gty~ 48 (177)
T 3qd6_R 15 SQCCSLC---QPGQKLVSDCTEFTETECLPCGESEFL 48 (177)
T ss_dssp SSEECCB---CTTBCCCBCCCSSCCCBCCBCCSSEEC
T ss_pred CeECCCC---CCCCEeccCCCCCCCCccccCCCCcee
Confidence 5678877 5888743 3477 67555433
Done!