Query 039786
Match_columns 210
No_of_seqs 122 out of 1194
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 13:09:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 3.7E-16 7.9E-21 138.5 9.2 127 56-182 213-341 (968)
2 PLN00113 leucine-rich repeat r 99.6 5.1E-16 1.1E-20 137.6 9.0 179 3-184 139-319 (968)
3 PLN03210 Resistant to P. syrin 99.4 4.5E-13 9.7E-18 120.4 9.7 173 4-184 611-836 (1153)
4 PLN03210 Resistant to P. syrin 99.4 7.6E-13 1.6E-17 118.9 10.8 107 77-184 778-904 (1153)
5 KOG0444 Cytoskeletal regulator 99.3 4.3E-14 9.4E-19 115.2 -5.4 178 2-185 195-374 (1255)
6 KOG0617 Ras suppressor protein 99.3 2.3E-14 4.9E-19 99.2 -7.0 150 28-183 32-183 (264)
7 KOG4194 Membrane glycoprotein 99.3 3.3E-12 7.1E-17 103.4 3.8 155 25-183 145-327 (873)
8 KOG4194 Membrane glycoprotein 99.2 1E-11 2.2E-16 100.6 2.8 175 2-182 100-278 (873)
9 KOG0617 Ras suppressor protein 99.2 3.4E-13 7.4E-18 93.4 -5.3 161 3-172 32-195 (264)
10 KOG0444 Cytoskeletal regulator 99.0 1.5E-11 3.3E-16 100.7 -2.8 180 2-184 76-302 (1255)
11 cd00116 LRR_RI Leucine-rich re 99.0 2.2E-10 4.7E-15 89.5 1.9 129 56-184 138-289 (319)
12 KOG3207 Beta-tubulin folding c 98.9 3.8E-10 8.2E-15 88.5 1.2 157 2-160 119-282 (505)
13 KOG3207 Beta-tubulin folding c 98.9 5.1E-10 1.1E-14 87.8 0.3 179 2-184 144-337 (505)
14 cd00116 LRR_RI Leucine-rich re 98.8 5.3E-10 1.2E-14 87.3 0.4 181 3-185 50-262 (319)
15 KOG0472 Leucine-rich repeat pr 98.8 1.1E-11 2.4E-16 96.3 -9.2 178 2-189 112-313 (565)
16 KOG0618 Serine/threonine phosp 98.8 5E-11 1.1E-15 100.8 -8.2 171 5-184 288-487 (1081)
17 KOG0618 Serine/threonine phosp 98.8 4.7E-10 1E-14 95.1 -2.5 172 5-183 242-440 (1081)
18 KOG0472 Leucine-rich repeat pr 98.8 2.5E-11 5.5E-16 94.3 -9.3 175 2-184 89-286 (565)
19 PF14580 LRR_9: Leucine-rich r 98.7 4.7E-09 1E-13 74.5 1.4 54 56-109 65-121 (175)
20 PRK15387 E3 ubiquitin-protein 98.7 4.1E-08 9E-13 84.3 6.5 55 125-184 402-456 (788)
21 KOG2120 SCF ubiquitin ligase, 98.7 3.7E-10 7.9E-15 84.9 -5.7 178 5-186 186-376 (419)
22 PRK15370 E3 ubiquitin-protein 98.6 3E-08 6.6E-13 85.2 4.9 75 5-90 200-275 (754)
23 KOG2120 SCF ubiquitin ligase, 98.6 9.6E-09 2.1E-13 77.4 1.1 157 3-160 209-374 (419)
24 PRK15370 E3 ubiquitin-protein 98.6 1.2E-07 2.5E-12 81.7 6.2 115 56-184 263-378 (754)
25 KOG4237 Extracellular matrix p 98.5 1.7E-09 3.8E-14 84.0 -6.1 37 148-185 273-310 (498)
26 PF13855 LRR_8: Leucine rich r 98.5 1.7E-07 3.7E-12 54.8 3.1 55 56-110 2-58 (61)
27 PF14580 LRR_9: Leucine-rich r 98.4 2.5E-07 5.4E-12 65.7 4.3 38 147-185 111-152 (175)
28 KOG4658 Apoptotic ATPase [Sign 98.4 1.6E-07 3.5E-12 82.1 3.8 83 25-109 567-650 (889)
29 KOG4658 Apoptotic ATPase [Sign 98.4 1.2E-07 2.6E-12 82.9 2.5 81 3-87 570-652 (889)
30 KOG1259 Nischarin, modulator o 98.4 4.2E-08 9.1E-13 74.2 -0.6 96 6-109 286-382 (490)
31 KOG2982 Uncharacterized conser 98.4 5.9E-08 1.3E-12 73.2 -0.5 83 3-88 70-157 (418)
32 KOG1909 Ran GTPase-activating 98.3 1.7E-07 3.7E-12 72.0 1.2 182 4-185 92-310 (382)
33 KOG1259 Nischarin, modulator o 98.3 8.1E-08 1.7E-12 72.7 -1.5 123 57-185 286-411 (490)
34 PRK15387 E3 ubiquitin-protein 98.3 9.7E-07 2.1E-11 76.1 4.8 83 78-169 383-465 (788)
35 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.9E-11 51.0 3.3 58 77-135 1-59 (61)
36 KOG0532 Leucine-rich repeat (L 98.2 1.8E-07 3.9E-12 76.2 -1.4 154 20-183 112-270 (722)
37 KOG4237 Extracellular matrix p 98.2 1.4E-07 3E-12 73.7 -2.1 84 23-108 85-171 (498)
38 PLN03150 hypothetical protein; 98.2 5.4E-06 1.2E-10 70.7 6.7 108 57-164 420-530 (623)
39 PLN03150 hypothetical protein; 98.1 4.7E-06 1E-10 71.1 5.5 106 79-184 420-526 (623)
40 PRK15386 type III secretion pr 98.1 3.1E-05 6.7E-10 62.0 8.9 70 25-109 48-120 (426)
41 KOG3665 ZYG-1-like serine/thre 98.1 2.9E-06 6.2E-11 72.7 3.2 129 29-160 122-261 (699)
42 COG4886 Leucine-rich repeat (L 98.0 2.9E-06 6.3E-11 68.4 2.7 37 145-183 251-287 (394)
43 KOG3665 ZYG-1-like serine/thre 98.0 6.9E-07 1.5E-11 76.4 -1.8 174 5-183 61-260 (699)
44 KOG4341 F-box protein containi 97.8 2.9E-06 6.2E-11 66.9 -0.4 183 3-185 215-438 (483)
45 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.8E-10 42.8 2.7 36 56-91 2-38 (44)
46 KOG0532 Leucine-rich repeat (L 97.8 3.9E-07 8.4E-12 74.3 -6.6 160 16-184 85-245 (722)
47 KOG4341 F-box protein containi 97.7 1.6E-06 3.6E-11 68.2 -3.4 183 3-185 189-413 (483)
48 COG4886 Leucine-rich repeat (L 97.7 2.4E-05 5.1E-10 63.2 3.0 150 5-163 141-291 (394)
49 KOG1909 Ran GTPase-activating 97.7 8.3E-06 1.8E-10 62.9 0.1 182 3-185 57-282 (382)
50 KOG0531 Protein phosphatase 1, 97.5 8E-06 1.7E-10 66.4 -2.3 31 151-182 234-264 (414)
51 PF12799 LRR_4: Leucine Rich r 97.5 0.00012 2.5E-09 39.6 2.7 35 149-184 1-35 (44)
52 PRK15386 type III secretion pr 97.3 0.00029 6.3E-09 56.5 4.5 66 56-133 53-120 (426)
53 KOG1859 Leucine-rich repeat pr 97.3 6.7E-06 1.5E-10 69.3 -5.2 106 73-185 183-291 (1096)
54 KOG2982 Uncharacterized conser 97.2 0.00013 2.7E-09 55.7 1.0 174 2-179 95-285 (418)
55 KOG1859 Leucine-rich repeat pr 97.2 7.3E-06 1.6E-10 69.1 -6.5 108 22-136 180-290 (1096)
56 KOG1644 U2-associated snRNP A' 97.2 0.00098 2.1E-08 48.1 5.0 103 30-136 43-151 (233)
57 KOG1947 Leucine rich repeat pr 97.1 4.1E-05 8.9E-10 63.1 -3.0 113 25-138 184-308 (482)
58 KOG1947 Leucine rich repeat pr 97.0 5.5E-05 1.2E-09 62.3 -2.7 131 3-134 187-330 (482)
59 KOG1644 U2-associated snRNP A' 96.6 0.002 4.2E-08 46.6 3.1 84 23-109 58-148 (233)
60 COG5238 RNA1 Ran GTPase-activa 96.6 0.0067 1.5E-07 46.0 5.9 181 2-183 90-313 (388)
61 KOG2739 Leucine-rich acidic nu 96.3 0.0021 4.6E-08 48.0 1.5 35 75-109 63-99 (260)
62 KOG2123 Uncharacterized conser 96.2 0.00013 2.8E-09 55.1 -4.9 99 28-131 18-123 (388)
63 KOG0531 Protein phosphatase 1, 96.2 0.00059 1.3E-08 55.6 -2.0 8 79-86 164-171 (414)
64 KOG2123 Uncharacterized conser 96.1 0.00014 3.1E-09 54.9 -5.2 102 76-183 18-127 (388)
65 KOG4579 Leucine-rich repeat (L 95.6 0.0015 3.3E-08 44.3 -1.5 79 26-108 50-130 (177)
66 KOG2739 Leucine-rich acidic nu 95.5 0.0066 1.4E-07 45.4 1.3 81 28-112 42-127 (260)
67 PF00560 LRR_1: Leucine Rich R 95.0 0.013 2.8E-07 26.3 1.0 21 150-171 1-21 (22)
68 COG5238 RNA1 Ran GTPase-activa 94.8 0.011 2.3E-07 45.0 0.6 37 75-111 90-130 (388)
69 PF13504 LRR_7: Leucine rich r 94.5 0.033 7.2E-07 23.3 1.6 17 149-166 1-17 (17)
70 PF13306 LRR_5: Leucine rich r 94.5 0.11 2.4E-06 34.6 5.0 82 24-109 7-89 (129)
71 KOG3864 Uncharacterized conser 94.4 0.003 6.6E-08 45.5 -2.9 39 147-185 149-188 (221)
72 KOG3864 Uncharacterized conser 94.2 0.0083 1.8E-07 43.4 -1.0 61 47-109 118-184 (221)
73 PF13516 LRR_6: Leucine Rich r 92.8 0.021 4.6E-07 26.1 -0.6 23 76-98 1-23 (24)
74 KOG4579 Leucine-rich repeat (L 92.2 0.017 3.6E-07 39.4 -1.9 99 3-106 52-153 (177)
75 smart00367 LRR_CC Leucine-rich 91.6 0.078 1.7E-06 24.8 0.6 23 76-98 1-24 (26)
76 PF13306 LRR_5: Leucine rich r 91.0 0.62 1.4E-05 30.9 4.9 102 50-158 8-112 (129)
77 smart00370 LRR Leucine-rich re 90.0 0.21 4.5E-06 23.2 1.3 20 76-95 1-20 (26)
78 smart00369 LRR_TYP Leucine-ric 90.0 0.21 4.5E-06 23.2 1.3 20 76-95 1-20 (26)
79 smart00368 LRR_RI Leucine rich 81.2 0.82 1.8E-05 21.7 0.8 22 77-98 2-23 (28)
80 smart00365 LRR_SD22 Leucine-ri 68.7 3.1 6.7E-05 19.4 1.0 16 76-91 1-16 (26)
81 smart00364 LRR_BAC Leucine-ric 67.2 3.9 8.4E-05 19.1 1.1 18 149-167 2-19 (26)
82 KOG3763 mRNA export factor TAP 59.3 4.6 0.0001 34.1 1.0 81 75-155 216-307 (585)
83 KOG3763 mRNA export factor TAP 48.7 12 0.00026 31.8 1.8 64 28-91 217-284 (585)
84 PF07723 LRR_2: Leucine Rich R 24.0 91 0.002 14.3 2.1 8 6-13 2-9 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=3.7e-16 Score=138.53 Aligned_cols=127 Identities=20% Similarity=0.123 Sum_probs=53.0
Q ss_pred CceEEEeec-cCc-cCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786 56 YLQRLYLTG-NMK-KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW 133 (210)
Q Consensus 56 ~L~~L~l~~-~~~-~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 133 (210)
+|++|++.+ .+. .+|..++.+++|++|++++|.+....+..++.+++|++|+++++.....++.....+++|+.|++.
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 455555544 333 245455555555555555555444434445555555555554221111111122233445555554
Q ss_pred ccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeec
Q 039786 134 DFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAG 182 (210)
Q Consensus 134 ~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~ 182 (210)
++......+.....+++|+.|++.+|.....+|..+..+++|+.|++.+
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 4332112222222334444444444432223333333344444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.64 E-value=5.1e-16 Score=137.63 Aligned_cols=179 Identities=18% Similarity=0.143 Sum_probs=99.3
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCc-cCChhhhcCCCcc
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNLI 80 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~p~~~~~l~~L~ 80 (210)
+++|++|++++ +.....++..++.+++|++|++++|......+ ..+..++ +|++|++.+ .+. .+|..++.+++|+
T Consensus 139 l~~L~~L~Ls~-n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 139 IPNLETLDLSN-NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred cCCCCEEECcC-CcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 34444444443 22223344555666666666666544322221 2344444 566666655 333 3555666666666
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
+|++++|.+....+..++.+++|++|+++++.....++.....+++|+.|++.++......+.....+++|+.|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 66666666555445556666666666666333222233334455667777766654333334344456777777777776
Q ss_pred CCCcccccccccccccceeeecch
Q 039786 161 LLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 161 ~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
....+|..+..+++|+.|++.++.
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCc
Confidence 444566666777777777776653
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.44 E-value=4.5e-13 Score=120.37 Aligned_cols=173 Identities=23% Similarity=0.298 Sum_probs=96.3
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCChhhhcCCCccE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLPDWIFKLKNLIR 81 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p~~~~~l~~L~~ 81 (210)
.+|++|++.+ .....++..+..+++|+.++++++......+ .+..++ +|+.|++.+ .+..+|..++.+++|+.
T Consensus 611 ~~L~~L~L~~--s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~-~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 611 ENLVKLQMQG--SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMAT-NLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred cCCcEEECcC--ccccccccccccCCCCCEEECCCCCCcCcCC--ccccCC-cccEEEecCCCCccccchhhhccCCCCE
Confidence 4566666654 2333445555667777777776654333322 244444 677777765 34556767777777777
Q ss_pred EEEEeec-CCCcchhhhhcCCCccEEEecCccCCcceE--------------------ec--------------------
Q 039786 82 LGLELSG-LAEEPIRVLQASPNLLEILLTGTYDYELFH--------------------FE-------------------- 120 (210)
Q Consensus 82 L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--------------------~~-------------------- 120 (210)
|++++|. +...+. ..++++|+.|++++|.....++ ..
T Consensus 686 L~L~~c~~L~~Lp~--~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 686 LDMSRCENLEILPT--GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred EeCCCCCCcCccCC--cCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence 7777764 333221 1145555555555332111110 00
Q ss_pred ----------CCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 121 ----------AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 121 ----------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
...+++|+.|++.+|+.+..+|...+.+++|+.|++.+|..++.+|.++ .+++|++|++++|.
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 0012355556666555555555555667777777777777677777665 56677777776653
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=7.6e-13 Score=118.91 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=64.0
Q ss_pred CCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceee---------------
Q 039786 77 KNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV--------------- 141 (210)
Q Consensus 77 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--------------- 141 (210)
++|+.|++++|......+..++++++|+.|++++|.....++... .+++|+.|++.+|..+..+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 355556666554323334456777777887777665444443222 4566777777766554332
Q ss_pred -----EEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 142 -----IIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 142 -----~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
|...+.+++|+.|++.+|+.++.+|..+..+++|+.+++.+|+
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 2223345667777777777676676666667777777777765
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.29 E-value=4.3e-14 Score=115.16 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=139.7
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
.|++|.+|+++++......+|.++..+.||..++++.|+.... ++++-.++ +|++|+|++ .++.+...++.+.+|+
T Consensus 195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v--Pecly~l~-~LrrLNLS~N~iteL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV--PECLYKLR-NLRRLNLSGNKITELNMTEGEWENLE 271 (1255)
T ss_pred cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc--hHHHhhhh-hhheeccCcCceeeeeccHHHHhhhh
Confidence 4677888888875556677888899999999999998766433 34555666 899999998 8888877788889999
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC 159 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~ 159 (210)
+|+++.|.++.. +..+.+++.|+.|.+. +...-+.++.+.+.+..|+.+..+++ .++-+|.....++.|+.|.++.|
T Consensus 272 tLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 272 TLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc
Confidence 999999987665 4677899999988886 44444556777777788888877653 46666766777899999999977
Q ss_pred CCCCcccccccccccccceeeecchH
Q 039786 160 PLLMEIPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 160 ~~l~~lp~~l~~l~~L~~l~l~~~~~ 185 (210)
. +-.+|.+|-.++.|+.|+++.++.
T Consensus 350 r-LiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 350 R-LITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred c-eeechhhhhhcCCcceeeccCCcC
Confidence 7 777899999999999999998764
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.27 E-value=2.3e-14 Score=99.20 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=82.6
Q ss_pred CCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786 28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI 106 (210)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 106 (210)
+.+++.|.++++... ..+ ..++.+. +|+.|++.+ .++.+|..++.++.|++|++.-|++... +..+|.+|.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vp-pnia~l~-nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l-prgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVP-PNIAELK-NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecC-CcHHHhh-hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC-ccccCCCchhhhh
Confidence 455566666664322 111 1244444 666666665 5666666666667777776666654332 3455666777777
Q ss_pred Eec-CccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786 107 LLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 107 ~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~ 183 (210)
+++ +......++-....+..|+.|-+.+.. .+.+|...+.+++|+.|.+.+|+ +-++|..++.+..|++|.+.++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc
Confidence 666 333222222222222444555554433 34455556666666666666666 4456666666666666666663
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.26 E-value=3.3e-12 Score=103.36 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=87.6
Q ss_pred hhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCC
Q 039786 25 IANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPN 102 (210)
Q Consensus 25 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 102 (210)
++-++.|++||++.| .+.+.+...+..-+ ++++|+|.+ .++.+. ..+..+.+|..|.|+.|+++..+...+..+|.
T Consensus 145 L~~l~alrslDLSrN-~is~i~~~sfp~~~-ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 145 LSALPALRSLDLSRN-LISEIPKPSFPAKV-NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHhHhhhhhhhhhhc-hhhcccCCCCCCCC-CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 333444444444442 22233333343333 788888887 677653 35667788888888888888888888888999
Q ss_pred ccEEEec-CccCCcce-EecCCCCCcccEEEecccCc--ceeeEEc-------------------cC---CCCcccEEEe
Q 039786 103 LLEILLT-GTYDYELF-HFEAGWFPKLQKLLLWDFIA--VKSVIIE-------------------KG---AVPDIRELRI 156 (210)
Q Consensus 103 L~~L~l~-~~~~~~~~-~~~~~~~~~L~~L~l~~~~~--l~~~~~~-------------------~~---~~~~L~~L~i 156 (210)
|+.|++. +.. +.. ...+.++++|+.|.+..+.. +..-.|. .+ .++.|++|++
T Consensus 223 L~~LdLnrN~i--rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 223 LESLDLNRNRI--RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred hhhhhccccce--eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhcc
Confidence 9988886 322 111 12344556666665543321 1110110 01 2455666666
Q ss_pred ccCCCCCcccccccccccccceeeecc
Q 039786 157 GPCPLLMEIPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 157 ~~~~~l~~lp~~l~~l~~L~~l~l~~~ 183 (210)
++|..-+.-++++...++|++|+++++
T Consensus 301 S~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 301 SYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred chhhhheeecchhhhcccceeEecccc
Confidence 666533444555666666666666664
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.18 E-value=1e-11 Score=100.56 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=91.5
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L 79 (210)
++++|+++++.. .....+|.+.+...+|++|++.+| .+....-+.++.++ -|+.|+|+. .++.+|. .+..-.++
T Consensus 100 nl~nLq~v~l~~--N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~-alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 100 NLPNLQEVNLNK--NELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALP-ALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred cCCcceeeeecc--chhhhcccccccccceeEEeeecc-ccccccHHHHHhHh-hhhhhhhhhchhhcccCCCCCCCCCc
Confidence 355566666543 333334444444455666666552 33322223344445 566666665 5555543 22333567
Q ss_pred cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceee-EEccCCCCcccEEEecc
Q 039786 80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEKGAVPDIRELRIGP 158 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~ 158 (210)
++|+|.+|.|+......+..+.+|..|.+++..........+..+|+|+.|++..+. ++.+ ......+++|+.|.+..
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhh
Confidence 777777777777666667777777777776332222122223345667777765432 2222 11123466677777776
Q ss_pred CCCCCcccccc-cccccccceeeec
Q 039786 159 CPLLMEIPIGI-EHLKNLKLLKFAG 182 (210)
Q Consensus 159 ~~~l~~lp~~l-~~l~~L~~l~l~~ 182 (210)
|. ++.+.+|+ ..+.++++|++..
T Consensus 255 N~-I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 255 ND-ISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred cC-cccccCcceeeecccceeeccc
Confidence 66 44444443 3455555555544
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=3.4e-13 Score=93.44 Aligned_cols=161 Identities=27% Similarity=0.280 Sum_probs=119.3
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccE
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIR 81 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~ 81 (210)
+.++..|.+++ .....+++.++.+.+|+.|.++++. ++..+ ..+..++ +|+.|++.- .+..+|..++.++.|+.
T Consensus 32 ~s~ITrLtLSH--NKl~~vppnia~l~nlevln~~nnq-ie~lp-~~issl~-klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSH--NKLTVVPPNIAELKNLEVLNLSNNQ-IEELP-TSISSLP-KLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhccc--CceeecCCcHHHhhhhhhhhcccch-hhhcC-hhhhhch-hhhheecchhhhhcCccccCCCchhhh
Confidence 45566777775 4556667888999999999998854 44433 3467777 899999876 67778999999999999
Q ss_pred EEEEeecCCCcc-hhhhhcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786 82 LGLELSGLAEEP-IRVLQASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC 159 (210)
Q Consensus 82 L~l~~~~l~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~ 159 (210)
||++.|.++... ++.+-.|+.|+.|.++ +.+ +.++...+.+.+|+.|.+.+.. +-.+|-+.+.+.+|++|+|.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc
Confidence 999998876643 3455667778777776 332 3344455778888988888754 4456777888999999999988
Q ss_pred CCCCccccccccc
Q 039786 160 PLLMEIPIGIEHL 172 (210)
Q Consensus 160 ~~l~~lp~~l~~l 172 (210)
. +.-+|..++.+
T Consensus 184 r-l~vlppel~~l 195 (264)
T KOG0617|consen 184 R-LTVLPPELANL 195 (264)
T ss_pred e-eeecChhhhhh
Confidence 8 77788776655
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.02 E-value=1.5e-11 Score=100.66 Aligned_cols=180 Identities=20% Similarity=0.194 Sum_probs=108.8
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccc----------------------cccccccCCccCceE
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEI----------------------LDLLSLSSPPQYLQR 59 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----------------------~~~~~~~~~~~~L~~ 59 (210)
.|+.||.+.+..+.-....+|+.+-.+..|..|++++|...+. ++-.-+..+. .|-+
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt-DLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT-DLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH-hHhh
Confidence 4566666666553334455566666677777777776543221 1111112222 3456
Q ss_pred EEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccC-CcceEec-----------------
Q 039786 60 LYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYD-YELFHFE----------------- 120 (210)
Q Consensus 60 L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~----------------- 120 (210)
|+|+. .++.+|.-+..+.+|++|.+++|.+...-+..+..|++|+.|.+++..- ...++.+
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 66666 6667777777777888888888776555455555666666666653211 1111111
Q ss_pred ------CCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 121 ------AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 121 ------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
....++|+.|+++++. ++.+....+.+.+|++|.++.|. ++.+|+.+..+++|+.|++.++.
T Consensus 235 p~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCc
Confidence 2234566666666532 44444455667888888888877 78899999999999998887764
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=2.2e-10 Score=89.52 Aligned_cols=129 Identities=18% Similarity=0.128 Sum_probs=56.6
Q ss_pred CceEEEeec-cCcc-----CChhhhcCCCccEEEEEeecCCCcchh----hhhcCCCccEEEecCccCCc----ceEecC
Q 039786 56 YLQRLYLTG-NMKK-----LPDWIFKLKNLIRLGLELSGLAEEPIR----VLQASPNLLEILLTGTYDYE----LFHFEA 121 (210)
Q Consensus 56 ~L~~L~l~~-~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~----~~~~~~ 121 (210)
+|++|++.+ .++. ++..+..+++|++|++++|.++..... .+..+++|++|+++++.... .+....
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 555665555 3331 222334445566666666555433222 22334466666665332110 011112
Q ss_pred CCCCcccEEEecccCcceeeEEc-cC----CCCcccEEEeccCCCC----Ccccccccccccccceeeecch
Q 039786 122 GWFPKLQKLLLWDFIAVKSVIIE-KG----AVPDIRELRIGPCPLL----MEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~-~~----~~~~L~~L~i~~~~~l----~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
..+++|+.|++.++......... .. ..+.|++|++.+|... ..+...+..+++|+++++.++.
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 33456666666654321100000 00 1256666666666521 1122333444566666666653
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.8e-10 Score=88.52 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=73.9
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccc-cCCccCceEEEeec-cCcc-CCh-hhhcCC
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSL-SSPPQYLQRLYLTG-NMKK-LPD-WIFKLK 77 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~-~~~~-~p~-~~~~l~ 77 (210)
++.+||++.+.++.........-...+++++.|+++.+-.....++..+ ..+| +|+.|+++. .+.. +.. .-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccCCccccchhhhh
Confidence 4556666666651111111112345567777777776543333222222 3445 677777765 3222 110 123556
Q ss_pred CccEEEEEeecCCCcchhhh-hcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceee-EEccCCCCcccEE
Q 039786 78 NLIRLGLELSGLAEEPIRVL-QASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEKGAVPDIREL 154 (210)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L 154 (210)
+|+.|.+++|+++-.++..+ ..+|+|+.|.+. |.. .-.-..+...+..|+.|+++++..+..- ....+.+|.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~-~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI-ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc-cceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 77777777777665444433 366777777765 321 1111112233455566666554432211 1123345555555
Q ss_pred EeccCC
Q 039786 155 RIGPCP 160 (210)
Q Consensus 155 ~i~~~~ 160 (210)
.+..|.
T Consensus 277 nls~tg 282 (505)
T KOG3207|consen 277 NLSSTG 282 (505)
T ss_pred hccccC
Confidence 555554
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.1e-10 Score=87.80 Aligned_cols=179 Identities=18% Similarity=0.150 Sum_probs=114.7
Q ss_pred CCCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc--CChhhhcCC
Q 039786 2 KLRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK--LPDWIFKLK 77 (210)
Q Consensus 2 ~L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--~p~~~~~l~ 77 (210)
.++++|.|+++. -.-....+.....++++|+.|.++.|......+-..-..++ +|+.|.+++ .++. +-.....+|
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~-~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS-HLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh-hhheEEeccCCCCHHHHHHHHHhCC
Confidence 478999999987 33345666777888999999999987554332211112344 899999987 4442 333446789
Q ss_pred CccEEEEEeec-CCCcchhhhhcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceeeEE-cc------CCC
Q 039786 78 NLIRLGLELSG-LAEEPIRVLQASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVII-EK------GAV 148 (210)
Q Consensus 78 ~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~------~~~ 148 (210)
+|+.|++..|. +... ......+..|+.|+|+ +......-....+.||.|..|++..+. +.++.+ .. ..|
T Consensus 223 sl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTF 300 (505)
T ss_pred cHHHhhhhccccccee-cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccc
Confidence 99999999984 2221 1223456778889998 333222222345678888888887654 233221 11 358
Q ss_pred CcccEEEeccCCCCCcccc--cccccccccceeeecch
Q 039786 149 PDIRELRIGPCPLLMEIPI--GIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 149 ~~L~~L~i~~~~~l~~lp~--~l~~l~~L~~l~l~~~~ 184 (210)
++|++|.+..|+ ++++++ .+..+++|+.+.+....
T Consensus 301 ~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 301 PKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccceeeecccCc-cccccccchhhccchhhhhhccccc
Confidence 999999999988 444432 34566778887776654
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.85 E-value=5.3e-10 Score=87.32 Aligned_cols=181 Identities=17% Similarity=0.063 Sum_probs=95.3
Q ss_pred CCCCcEEEEEe-cC----CCcchHHHHhhcCCCCceEEEEecCcccccc--cccccCCccCceEEEeec-cCcc-----C
Q 039786 3 LRQLRKLSIRP-QN----GNGKDLCGLIANLKNLESLTVEMTSKEEILD--LLSLSSPPQYLQRLYLTG-NMKK-----L 69 (210)
Q Consensus 3 L~~L~~L~l~~-~~----~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~-~~~~-----~ 69 (210)
.++|++|+++. .. .....++..++.+++|+.|++++|....... +..+...+ +|++|++.+ .++. +
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSS-SLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccC-cccEEEeeCCccchHHHHHH
Confidence 35567777665 11 1113344566667777777777755432111 11111112 477777776 4442 2
Q ss_pred ChhhhcC-CCccEEEEEeecCCCcch----hhhhcCCCccEEEecCccCC-cceE---ecCCCCCcccEEEecccCccee
Q 039786 70 PDWIFKL-KNLIRLGLELSGLAEEPI----RVLQASPNLLEILLTGTYDY-ELFH---FEAGWFPKLQKLLLWDFIAVKS 140 (210)
Q Consensus 70 p~~~~~l-~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~-~~~~---~~~~~~~~L~~L~l~~~~~l~~ 140 (210)
...+..+ ++|+.|++++|.++.... ..+..+++|+.|+++.+.-. ..+. .....+++|+.|++.+|.....
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 2234455 777888888777664322 23445667788877633221 1111 1122345788888877642111
Q ss_pred ----eEEccCCCCcccEEEeccCCCCCc-ccccc-cc----cccccceeeecchH
Q 039786 141 ----VIIEKGAVPDIRELRIGPCPLLME-IPIGI-EH----LKNLKLLKFAGMVK 185 (210)
Q Consensus 141 ----~~~~~~~~~~L~~L~i~~~~~l~~-lp~~l-~~----l~~L~~l~l~~~~~ 185 (210)
+......+++|++|++++|. ++. ....+ .. .++|++|++.+|..
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 11122346778888888876 332 11111 12 36888888888753
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.84 E-value=1.1e-11 Score=96.26 Aligned_cols=178 Identities=21% Similarity=0.199 Sum_probs=107.1
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCc----------------------cCceE
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPP----------------------QYLQR 59 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----------------------~~L~~ 59 (210)
.+.+|++++++. .....++++++.+..++.++..+++..... +++..+. +.|++
T Consensus 112 s~~~l~~l~~s~--n~~~el~~~i~~~~~l~dl~~~~N~i~slp--~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 112 SLISLVKLDCSS--NELKELPDSIGRLLDLEDLDATNNQISSLP--EDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKH 187 (565)
T ss_pred hhhhhhhhhccc--cceeecCchHHHHhhhhhhhccccccccCc--hHHHHHHHHHHhhccccchhhCCHHHHHHHHHHh
Confidence 456778888875 445566777788888888877765432211 1222222 13444
Q ss_pred EEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecC-CCCCcccEEEecccCc
Q 039786 60 LYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEA-GWFPKLQKLLLWDFIA 137 (210)
Q Consensus 60 L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 137 (210)
|+... -++.+|..++.+.+|.-|+++.|++...+ .++++..|+.+.+.... .+.++... ..++++.+|++.++.
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk- 263 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK- 263 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-
Confidence 44443 33445555555555555555555544422 44555555555443111 11111111 245677888887653
Q ss_pred ceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecchHHHHH
Q 039786 138 VKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYY 189 (210)
Q Consensus 138 l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~~~~~ 189 (210)
+.++|.+.--+.+|++|++++|. ++.+|..++++ .|+.+.+.++|...++
T Consensus 264 lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHH
Confidence 66777766667889999999888 88899999999 9999999998865543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.77 E-value=5e-11 Score=100.84 Aligned_cols=171 Identities=23% Similarity=0.298 Sum_probs=102.1
Q ss_pred CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCccccccc-------------------ccc-----cCCccCceEE
Q 039786 5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDL-------------------LSL-----SSPPQYLQRL 60 (210)
Q Consensus 5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------------------~~~-----~~~~~~L~~L 60 (210)
+|+.|.+.. .....+++.+++++.|++|+++.+......+. ... ..++ .|+.|
T Consensus 288 ~L~~l~~~~--nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~-~Lq~L 364 (1081)
T KOG0618|consen 288 SLVSLSAAY--NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA-ALQEL 364 (1081)
T ss_pred hHHHHHhhh--hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH-HHHHH
Confidence 344444432 33444556666677788888877554322110 000 0112 35555
Q ss_pred Eeec-cCcc--CChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCc
Q 039786 61 YLTG-NMKK--LPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIA 137 (210)
Q Consensus 61 ~l~~-~~~~--~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 137 (210)
.+.+ .++. +| .+..+++|+.|+++.|.+..++-..+.+++.|+.|.+++.. ...++.....++.|++|....+ .
T Consensus 365 ylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN-~ 441 (1081)
T KOG0618|consen 365 YLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSN-Q 441 (1081)
T ss_pred HHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCC-c
Confidence 5555 4443 44 45566788888888887777776777788888888876321 2334445556677777764432 2
Q ss_pred ceeeEEccCCCCcccEEEeccCCCCCc--ccccccccccccceeeecch
Q 039786 138 VKSVIIEKGAVPDIRELRIGPCPLLME--IPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 138 l~~~~~~~~~~~~L~~L~i~~~~~l~~--lp~~l~~l~~L~~l~l~~~~ 184 (210)
+..+| +...++.|+.+|++.|. ++. +|.... .++|++|++++++
T Consensus 442 l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 442 LLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred eeech-hhhhcCcceEEecccch-hhhhhhhhhCC-CcccceeeccCCc
Confidence 34444 66778999999999887 442 333221 2899999999987
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.76 E-value=4.7e-10 Score=95.14 Aligned_cols=172 Identities=22% Similarity=0.185 Sum_probs=94.1
Q ss_pred CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEE
Q 039786 5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLG 83 (210)
Q Consensus 5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~ 83 (210)
+|.+++++. .....+++-++.+.+|+.+.+..|.. ...+ ..+.... +|++|.... .++.+|...+.++.|++|+
T Consensus 242 nl~~~dis~--n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp-~ri~~~~-~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 242 NLQYLDISH--NNLSNLPEWIGACANLEALNANHNRL-VALP-LRISRIT-SLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cceeeecch--hhhhcchHHHHhcccceEecccchhH-HhhH-HHHhhhh-hHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 566666664 45555666677777777777776544 2222 2233333 677777766 6777777777788889999
Q ss_pred EEeecCCCcchhhhhcCCC-ccEEEe------------------------cCccCCcceEecCCCCCcccEEEecccCcc
Q 039786 84 LELSGLAEEPIRVLQASPN-LLEILL------------------------TGTYDYELFHFEAGWFPKLQKLLLWDFIAV 138 (210)
Q Consensus 84 l~~~~l~~~~~~~l~~l~~-L~~L~l------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 138 (210)
+..|.+...+...+..... |..|.. .+..-.+.......+|++|+.|+++++. +
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L 395 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-L 395 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-c
Confidence 9888877765433332221 222222 2111111112223445566666665432 3
Q ss_pred eeeEEc-cCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786 139 KSVIIE-KGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 139 ~~~~~~-~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~ 183 (210)
..++.. ...++.|++|.+++|. ++.+|+.+..++.|++|...++
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCC
Confidence 333322 1235555666666665 5666666666666666655443
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.76 E-value=2.5e-11 Score=94.31 Aligned_cols=175 Identities=22% Similarity=0.224 Sum_probs=109.9
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
.+..++.++++. .....++..++.+.++.+++++.+...+..+ .+..+. .+..++..+ .+..+|+.+..+.+|.
T Consensus 89 ~l~~l~~l~vs~--n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~--~i~~~~-~l~dl~~~~N~i~slp~~~~~~~~l~ 163 (565)
T KOG0472|consen 89 ELEALKSLNVSH--NKLSELPEQIGSLISLVKLDCSSNELKELPD--SIGRLL-DLEDLDATNNQISSLPEDMVNLSKLS 163 (565)
T ss_pred HHHHHHHhhccc--chHhhccHHHhhhhhhhhhhccccceeecCc--hHHHHh-hhhhhhccccccccCchHHHHHHHHH
Confidence 345667778875 5567788999999999999999876544322 333333 577776655 6777887777777777
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccC---------------------cce
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFI---------------------AVK 139 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------~l~ 139 (210)
.+++.+|++...+...+. |+.|+.|+.. ....+.++...+++.+|..|.+..+. .+.
T Consensus 164 ~l~~~~n~l~~l~~~~i~-m~~L~~ld~~-~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIA-MKRLKHLDCN-SNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE 241 (565)
T ss_pred HhhccccchhhCCHHHHH-HHHHHhcccc-hhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH
Confidence 777777776555443333 6666666653 22223333334444444444333221 122
Q ss_pred eeEEccC-CCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 140 SVIIEKG-AVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 140 ~~~~~~~-~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
-++.+.. .++++..|++.+|. ++++|+++..+.+|.+++++++.
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred hhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc
Confidence 2222222 46777888888877 77888888888888888887764
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=4.7e-09 Score=74.49 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=14.9
Q ss_pred CceEEEeec-cCccCChhh-hcCCCccEEEEEeecCCC-cchhhhhcCCCccEEEec
Q 039786 56 YLQRLYLTG-NMKKLPDWI-FKLKNLIRLGLELSGLAE-EPIRVLQASPNLLEILLT 109 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~-~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~ 109 (210)
+|+.|.+++ .++.++..+ ..+++|+.|++++|.+.. ..+..+..+|+|+.|++.
T Consensus 65 ~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 65 RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence 455555544 444443322 234455555555444433 223344444445544444
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.68 E-value=4.1e-08 Score=84.31 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=38.6
Q ss_pred CcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 125 PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 125 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
++|+.|++.++. +..++. ...+|+.|++.+|. ++.+|..+..+++|+.|++.+++
T Consensus 402 s~L~~LdLS~N~-LssIP~---l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCCc-CCCCCc---chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 456666666543 333332 23467778888777 67889888899999999999975
No 21
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.7e-10 Score=84.86 Aligned_cols=178 Identities=21% Similarity=0.227 Sum_probs=106.7
Q ss_pred CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCcc--CChhhhcCCCcc
Q 039786 5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKK--LPDWIFKLKNLI 80 (210)
Q Consensus 5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~--~p~~~~~l~~L~ 80 (210)
.|++|++++....-..+...+.+++.|+.|.+.+....... ...++.-. .|++|++.. .+++ +.--+..++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I-~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI-VNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH-HHHHhccc-cceeeccccccccchhHHHHHHHhhhhHh
Confidence 36667777522223344455667777777777775442222 23345444 688888876 4443 222456778888
Q ss_pred EEEEEeecCCCcchhhhh--cCCCccEEEecCcc---CCcceEecCCCCCcccEEEecccCcceee-EEccCCCCcccEE
Q 039786 81 RLGLELSGLAEEPIRVLQ--ASPNLLEILLTGTY---DYELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEKGAVPDIREL 154 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L 154 (210)
.|+++.|.+..+.+..+. --++|..|+++++. ....+..-...+|.|..|+++++-.+..- ..+...|+.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 888888876555443322 22667777776332 11112222356788888888887655432 1223468889999
Q ss_pred EeccCCCCCcccc---cccccccccceeeecchHH
Q 039786 155 RIGPCPLLMEIPI---GIEHLKNLKLLKFAGMVKQ 186 (210)
Q Consensus 155 ~i~~~~~l~~lp~---~l~~l~~L~~l~l~~~~~~ 186 (210)
.++.|-.+ .|. .+...|+|.+|++.+|-.+
T Consensus 344 SlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 344 SLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 99888732 233 2356788999999987544
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.65 E-value=3e-08 Score=85.22 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=36.2
Q ss_pred CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEE
Q 039786 5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLG 83 (210)
Q Consensus 5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~ 83 (210)
+|+.|++++ .....++..+. .+|+.|++++|.... .+ .. ++.+|+.|++.+ .+..+|.++. ++|+.|+
T Consensus 200 ~L~~L~Ls~--N~LtsLP~~l~--~nL~~L~Ls~N~Lts-LP-~~---l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDN--NELKSLPENLQ--GNIKTLYANSNQLTS-IP-AT---LPDTIQEMELSINRITELPERLP--SALQSLD 268 (754)
T ss_pred CCcEEEecC--CCCCcCChhhc--cCCCEEECCCCcccc-CC-hh---hhccccEEECcCCccCcCChhHh--CCCCEEE
Confidence 577777775 22333444332 467777777654321 11 01 112455555555 4445554332 3455555
Q ss_pred EEeecCC
Q 039786 84 LELSGLA 90 (210)
Q Consensus 84 l~~~~l~ 90 (210)
+++|.++
T Consensus 269 Ls~N~L~ 275 (754)
T PRK15370 269 LFHNKIS 275 (754)
T ss_pred CcCCccC
Confidence 5555443
No 23
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.6e-09 Score=77.40 Aligned_cols=157 Identities=22% Similarity=0.188 Sum_probs=101.0
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeecc-Cc-c-CChhhhcC-CC
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGN-MK-K-LPDWIFKL-KN 78 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~-~-~p~~~~~l-~~ 78 (210)
+.+|+.|.+.+ ....+.+...++.-.+|+.++++.|+......+..+-..+..|.+|++.=+ +. . +...+.+. ++
T Consensus 209 C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 209 CSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 45788888885 566777888888889999999998876554443322222226778877642 11 1 22223222 67
Q ss_pred ccEEEEEeec--CCCcchhhhh-cCCCccEEEecCccCCc-ceEecCCCCCcccEEEecccCccee-eEEccCCCCcccE
Q 039786 79 LIRLGLELSG--LAEEPIRVLQ-ASPNLLEILLTGTYDYE-LFHFEAGWFPKLQKLLLWDFIAVKS-VIIEKGAVPDIRE 153 (210)
Q Consensus 79 L~~L~l~~~~--l~~~~~~~l~-~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~ 153 (210)
|+.|+++++. +....+..+. ..|+|..|+++.+.... ........|+.|+.+.++.|..+.. ...+.++.|.|.+
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence 8888888875 2223333333 68888888888554322 1222345678888888888876542 3345667899999
Q ss_pred EEeccCC
Q 039786 154 LRIGPCP 160 (210)
Q Consensus 154 L~i~~~~ 160 (210)
|++.+|-
T Consensus 368 Ldv~g~v 374 (419)
T KOG2120|consen 368 LDVFGCV 374 (419)
T ss_pred EEecccc
Confidence 9998886
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.57 E-value=1.2e-07 Score=81.71 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=56.4
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD 134 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 134 (210)
+|+.|++++ .++.+|..+. ++|+.|++++|.++..+. .+ .++|+.|+++++... .++ ...+++|+.|.+.+
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~Lt-~LP--~~l~~sL~~L~Ls~ 334 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSLT-ALP--ETLPPGLKTLEAGE 334 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCccc-cCC--ccccccceeccccC
Confidence 455555554 4444544322 355555555555443221 11 124445554422111 111 11234566666655
Q ss_pred cCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 135 FIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 135 ~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
|. +..++.. -.++|+.|++.+|. ++.+|..+ .++|++|++.+|.
T Consensus 335 N~-Lt~LP~~--l~~sL~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 335 NA-LTSLPAS--LPPELQVLDVSKNQ-ITVLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred Cc-cccCChh--hcCcccEEECCCCC-CCcCChhh--cCCcCEEECCCCc
Confidence 43 2333221 13567777777776 55666554 3578888887764
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.49 E-value=1.7e-09 Score=84.00 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=17.4
Q ss_pred CCcccEEEeccCCCCCcc-cccccccccccceeeecchH
Q 039786 148 VPDIRELRIGPCPLLMEI-PIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 148 ~~~L~~L~i~~~~~l~~l-p~~l~~l~~L~~l~l~~~~~ 185 (210)
+++|++|++++|. ++.+ +.+++.++++++|.+.++..
T Consensus 273 L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 273 LPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKL 310 (498)
T ss_pred cccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchH
Confidence 3555555555554 2222 22234455555555555444
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.7e-07 Score=54.82 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=40.0
Q ss_pred CceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecC
Q 039786 56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTG 110 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 110 (210)
+|++|++.+ .++.+|. ++..+++|++|++++|.++..+...+.++++|++|++++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 677777777 6666653 667777888888887777766666777777777777763
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=2.5e-07 Score=65.73 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=18.4
Q ss_pred CCCcccEEEeccCCCCCcccc----cccccccccceeeecchH
Q 039786 147 AVPDIRELRIGPCPLLMEIPI----GIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 147 ~~~~L~~L~i~~~~~l~~lp~----~l~~l~~L~~l~l~~~~~ 185 (210)
.+++|+.|++.+|| +...+. .+..+|+|+.||-.....
T Consensus 111 ~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 111 SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 46777777777777 322222 245678888887766543
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.44 E-value=1.6e-07 Score=82.11 Aligned_cols=83 Identities=28% Similarity=0.266 Sum_probs=36.9
Q ss_pred hhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCc
Q 039786 25 IANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNL 103 (210)
Q Consensus 25 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 103 (210)
+..++.|+.|++++|......+ ..+..+. +|++|++.+ .++.+|..++.+..|.+|++..+............+++|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP-~~I~~Li-~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLP-SSIGELV-HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCccCcCC-hHHhhhh-hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 4445555555555433222221 2233343 455555555 455555555555555555555443212222233335555
Q ss_pred cEEEec
Q 039786 104 LEILLT 109 (210)
Q Consensus 104 ~~L~l~ 109 (210)
++|.+.
T Consensus 645 r~L~l~ 650 (889)
T KOG4658|consen 645 RVLRLP 650 (889)
T ss_pred cEEEee
Confidence 555443
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.41 E-value=1.2e-07 Score=82.87 Aligned_cols=81 Identities=27% Similarity=0.268 Sum_probs=38.6
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCChhhhcCCCcc
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p~~~~~l~~L~ 80 (210)
|+.|++|++++ +.....+|++++.+-+|++|+++++... ..+ .++..+. +|.+|++.. ....+|.....+++|+
T Consensus 570 m~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP-~~l~~Lk-~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 570 LPLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGIS-HLP-SGLGNLK-KLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred CcceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCcc-ccc-hHHHHHH-hhheeccccccccccccchhhhccccc
Confidence 45555555553 3444555555555555555555553322 111 2233333 455555554 2222343444455555
Q ss_pred EEEEEee
Q 039786 81 RLGLELS 87 (210)
Q Consensus 81 ~L~l~~~ 87 (210)
+|.+...
T Consensus 646 ~L~l~~s 652 (889)
T KOG4658|consen 646 VLRLPRS 652 (889)
T ss_pred EEEeecc
Confidence 5555544
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=4.2e-08 Score=74.21 Aligned_cols=96 Identities=21% Similarity=0.263 Sum_probs=54.9
Q ss_pred CcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEE
Q 039786 6 LRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGL 84 (210)
Q Consensus 6 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l 84 (210)
|+.+++++ .....+-.++.-.+.++.|+++.|.... +..++.++ +|++|++++ .++.+..|...+-++++|.+
T Consensus 286 LtelDLS~--N~I~~iDESvKL~Pkir~L~lS~N~i~~---v~nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 286 LTELDLSG--NLITQIDESVKLAPKLRRLILSQNRIRT---VQNLAELP-QLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhccccc--cchhhhhhhhhhccceeEEeccccceee---ehhhhhcc-cceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 45566654 2233334444555666666666643322 22345555 677777766 55566666666667777777
Q ss_pred EeecCCCcchhhhhcCCCccEEEec
Q 039786 85 ELSGLAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 85 ~~~~l~~~~~~~l~~l~~L~~L~l~ 109 (210)
..|.+.. +..++++-+|.+|+++
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLS 382 (490)
T ss_pred hhhhHhh--hhhhHhhhhheecccc
Confidence 6665433 4455566666666665
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=5.9e-08 Score=73.20 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=63.0
Q ss_pred CCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecCcccccccccc-cCCccCceEEEeec-cC--ccCChhhhcCC
Q 039786 3 LRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSL-SSPPQYLQRLYLTG-NM--KKLPDWIFKLK 77 (210)
Q Consensus 3 L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~-~~--~~~p~~~~~l~ 77 (210)
.++++.+++.+ ......++...+.++++|+.|.++.|.....+. .. .+.. +|+.|-++| ++ +........+|
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~-nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLK-NLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCccccc-ceEEEEEcCCCCChhhhhhhhhcch
Confidence 45778888888 556788888889999999999999987755543 33 2444 899999998 44 34566677788
Q ss_pred CccEEEEEeec
Q 039786 78 NLIRLGLELSG 88 (210)
Q Consensus 78 ~L~~L~l~~~~ 88 (210)
.++.|+++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 88888888873
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.33 E-value=1.7e-07 Score=71.96 Aligned_cols=182 Identities=17% Similarity=0.201 Sum_probs=113.7
Q ss_pred CCCcEEEEEe---cCCCcchHHHHhhcCCCCceEEEEecCcccccc-----------cccccCCccCceEEEeec-cCcc
Q 039786 4 RQLRKLSIRP---QNGNGKDLCGLIANLKNLESLTVEMTSKEEILD-----------LLSLSSPPQYLQRLYLTG-NMKK 68 (210)
Q Consensus 4 ~~L~~L~l~~---~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----------~~~~~~~~~~L~~L~l~~-~~~~ 68 (210)
++|++|++|+ .-.....+-+.+.++..|++|++.+|...+... ...-.+.+++|+.+..+. .+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 5788999987 222344445666778899999998887643221 111122233788888776 4443
Q ss_pred C-----ChhhhcCCCccEEEEEeecCCCcch----hhhhcCCCccEEEec-CccCCc---ceEecCCCCCcccEEEeccc
Q 039786 69 L-----PDWIFKLKNLIRLGLELSGLAEEPI----RVLQASPNLLEILLT-GTYDYE---LFHFEAGWFPKLQKLLLWDF 135 (210)
Q Consensus 69 ~-----p~~~~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~-~~~~~~---~~~~~~~~~~~L~~L~l~~~ 135 (210)
- ...+...+.|+.+.+..|.|..... ..+..+|.|+.|+|. |.+... .+......+++|+.+.+.+|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 2 2345667899999999988766554 345578999999997 443221 11122345678888888887
Q ss_pred CcceeeEE-----ccCCCCcccEEEeccCCCCC----cccccccccccccceeeecchH
Q 039786 136 IAVKSVII-----EKGAVPDIRELRIGPCPLLM----EIPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 136 ~~l~~~~~-----~~~~~~~L~~L~i~~~~~l~----~lp~~l~~l~~L~~l~l~~~~~ 185 (210)
.--..-.. -....|+|+.|.+.+|.... .+...+...+.|+.|.+.+|..
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 52111100 11247889999999888432 1233345578899999988764
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.28 E-value=8.1e-08 Score=72.72 Aligned_cols=123 Identities=19% Similarity=0.163 Sum_probs=55.8
Q ss_pred ceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEeccc
Q 039786 57 LQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDF 135 (210)
Q Consensus 57 L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 135 (210)
|+++++++ .++.+...+.-.|.++.|+++.|.++. ...+..+++|..|++++....+ +.-....+-++++|.++++
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhh
Confidence 33444443 333333344444555555555554433 2334455555555554221110 0001112334445544432
Q ss_pred CcceeeEEccCCCCcccEEEeccCCCCCcc--cccccccccccceeeecchH
Q 039786 136 IAVKSVIIEKGAVPDIRELRIGPCPLLMEI--PIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 136 ~~l~~~~~~~~~~~~L~~L~i~~~~~l~~l--p~~l~~l~~L~~l~l~~~~~ 185 (210)
. ++.+ ...+.+-+|..|++.+|. +..+ -.+++++|.|+.+.+.++|.
T Consensus 363 ~-iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 363 K-IETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred h-Hhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCc
Confidence 1 1111 112245566777777665 2222 23567777777777777663
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.28 E-value=9.7e-07 Score=76.08 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=50.1
Q ss_pred CccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEec
Q 039786 78 NLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIG 157 (210)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~ 157 (210)
+|+.|++++|.++..+. ..++|+.|+++++... .++ ..+.+|+.|++.++. +..+|.....+++|+.|+++
T Consensus 383 ~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~Ls-sIP---~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTSLPV----LPSELKELMVSGNRLT-SLP---MLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccCCCC----cccCCCEEEccCCcCC-CCC---cchhhhhhhhhccCc-ccccChHHhhccCCCeEECC
Confidence 56666666666554321 2356777777633221 122 123467788887654 55666666778999999999
Q ss_pred cCCCCCcccccc
Q 039786 158 PCPLLMEIPIGI 169 (210)
Q Consensus 158 ~~~~l~~lp~~l 169 (210)
+|+.....+..+
T Consensus 454 ~N~Ls~~~~~~L 465 (788)
T PRK15387 454 GNPLSERTLQAL 465 (788)
T ss_pred CCCCCchHHHHH
Confidence 998443334433
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.3e-06 Score=50.98 Aligned_cols=58 Identities=26% Similarity=0.190 Sum_probs=39.2
Q ss_pred CCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEeccc
Q 039786 77 KNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLWDF 135 (210)
Q Consensus 77 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~ 135 (210)
|+|++|++++|.++..+...+.++++|++|+++++.- ..+.. ....+++|+.|++.++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCC
Confidence 5788888888888777777888888888888873322 22222 2355666677776654
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.18 E-value=1.8e-07 Score=76.17 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=103.3
Q ss_pred hHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhh
Q 039786 20 DLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQ 98 (210)
Q Consensus 20 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 98 (210)
.++..++++..|..++++.|.... .+ ..++.+| |+.|.+.+ +++.+|..++..+.|..|+.+.|.+... +..++
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~-lp-~~lC~lp--Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~sl-psql~ 186 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSH-LP-DGLCDLP--LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSL-PSQLG 186 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhc-CC-hhhhcCc--ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhc-hHHhh
Confidence 346667777777888887754422 22 3455565 88888877 8888888888888899999988886443 45667
Q ss_pred cCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccc---ccccc
Q 039786 99 ASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGI---EHLKN 174 (210)
Q Consensus 99 ~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l---~~l~~ 174 (210)
.+.+|+.|.+. +.. ..++.....+ .|.+|+++ |..+..+|.....|..|++|.+.+|+ +..-|..+ +...=
T Consensus 187 ~l~slr~l~vrRn~l--~~lp~El~~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHI 261 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHL--EDLPEELCSL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHI 261 (722)
T ss_pred hHHHHHHHHHhhhhh--hhCCHHHhCC-ceeeeecc-cCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceee
Confidence 88888888776 332 2233233333 47888888 55677888888888999999999888 65545443 23344
Q ss_pred ccceeeecc
Q 039786 175 LKLLKFAGM 183 (210)
Q Consensus 175 L~~l~l~~~ 183 (210)
-|+|+..-|
T Consensus 262 FKyL~~qA~ 270 (722)
T KOG0532|consen 262 FKYLSTQAC 270 (722)
T ss_pred eeeecchhc
Confidence 455555444
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.18 E-value=1.4e-07 Score=73.71 Aligned_cols=84 Identities=23% Similarity=0.242 Sum_probs=37.5
Q ss_pred HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhc
Q 039786 23 GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQA 99 (210)
Q Consensus 23 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 99 (210)
.+|+.+++|+.|++++| .++.+...+|..++ ++..|-+.+ +++.+|. .++.+..|+.|.+.-|++.......+..
T Consensus 85 ~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 85 GAFKTLHRLRRLDLSKN-NISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred hhccchhhhceeccccc-chhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 44555556666666553 33333334455554 444443333 4444443 3344444444444444443333334444
Q ss_pred CCCccEEEe
Q 039786 100 SPNLLEILL 108 (210)
Q Consensus 100 l~~L~~L~l 108 (210)
+++|..|.+
T Consensus 163 L~~l~lLsl 171 (498)
T KOG4237|consen 163 LPSLSLLSL 171 (498)
T ss_pred hhhcchhcc
Confidence 444443333
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=5.4e-06 Score=70.67 Aligned_cols=108 Identities=17% Similarity=0.067 Sum_probs=69.6
Q ss_pred ceEEEeec-cCc-cCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786 57 LQRLYLTG-NMK-KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD 134 (210)
Q Consensus 57 L~~L~l~~-~~~-~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 134 (210)
++.|+|.+ .+. .+|..++.+++|+.|+|++|.+....+..++.+++|+.|+++++.....++.....+++|+.|++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677766 554 3777778888888888888877666566778888888888874433333444556677888888877
Q ss_pred cCcceeeEEccCC-CCcccEEEeccCCCCCc
Q 039786 135 FIAVKSVIIEKGA-VPDIRELRIGPCPLLME 164 (210)
Q Consensus 135 ~~~l~~~~~~~~~-~~~L~~L~i~~~~~l~~ 164 (210)
+.....+|...+. +.++..+++.+|+.+-.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccC
Confidence 6543344433322 34556677776664433
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=4.7e-06 Score=71.08 Aligned_cols=106 Identities=19% Similarity=0.107 Sum_probs=81.6
Q ss_pred ccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEecc
Q 039786 79 LIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGP 158 (210)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 158 (210)
++.|+|.+|.+....+..++.+++|+.|+++++.....++.....+++|+.|++.++.....++...+.+++|+.|++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77889999988777777899999999999984433334444567789999999998765556676677899999999999
Q ss_pred CCCCCccccccccc-ccccceeeecch
Q 039786 159 CPLLMEIPIGIEHL-KNLKLLKFAGMV 184 (210)
Q Consensus 159 ~~~l~~lp~~l~~l-~~L~~l~l~~~~ 184 (210)
|.....+|..+... .++..+++.+++
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 98666788877543 456677777654
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=3.1e-05 Score=61.97 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=44.6
Q ss_pred hhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCChhhhcCCCccEEEEEeec-CCCcchhhhhcCC
Q 039786 25 IANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLPDWIFKLKNLIRLGLELSG-LAEEPIRVLQASP 101 (210)
Q Consensus 25 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~ 101 (210)
+..+.++++|++++|.. .. +..+|.+|++|.+.+ .++.+|+.+ .++|+.|++++|. +... .+
T Consensus 48 ~~~~~~l~~L~Is~c~L-~s-----LP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-------P~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDI-ES-----LPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-------PE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCC-cc-----cCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-------cc
Confidence 44568889999988732 22 223454799999876 555677544 2688889988884 4322 14
Q ss_pred CccEEEec
Q 039786 102 NLLEILLT 109 (210)
Q Consensus 102 ~L~~L~l~ 109 (210)
+|+.|++.
T Consensus 113 sLe~L~L~ 120 (426)
T PRK15386 113 SVRSLEIK 120 (426)
T ss_pred ccceEEeC
Confidence 46666664
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.06 E-value=2.9e-06 Score=72.66 Aligned_cols=129 Identities=14% Similarity=0.071 Sum_probs=63.3
Q ss_pred CCCceEEEEecCccccccccccc-CCccCceEEEeec-cCcc--CChhhhcCCCccEEEEEeecCCCcchhhhhcCCCcc
Q 039786 29 KNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKK--LPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLL 104 (210)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~--~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 104 (210)
.+|++|+|++........+..+. .+| .|++|.+.| .+.. ...-...+|+|..||++++.++. ...++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LP-sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLP-SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--LSGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCc-ccceEEecCceecchhHHHHhhccCccceeecCCCCccC--cHHHhccccHH
Confidence 47777777663332222122222 234 677777766 3221 11223456777777777776655 35666677777
Q ss_pred EEEecCccCCc-ceEecCCCCCcccEEEecccCcceee------EEccCCCCcccEEEeccCC
Q 039786 105 EILLTGTYDYE-LFHFEAGWFPKLQKLLLWDFIAVKSV------IIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 105 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~------~~~~~~~~~L~~L~i~~~~ 160 (210)
.|.+.+-.-.. .-....-.+.+|+.||+++-...... ......+|+|+.|+.++..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 66664221000 00011223566777776643322211 0112246777777776554
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.03 E-value=2.9e-06 Score=68.44 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=25.5
Q ss_pred cCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786 145 KGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 145 ~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~ 183 (210)
.+.+++++.|++..|. ++.++. ++.+.+++.+++.+.
T Consensus 251 ~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 251 IGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred hccccccceecccccc-cccccc-ccccCccCEEeccCc
Confidence 3456667788877776 555554 667777888887764
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=6.9e-07 Score=76.38 Aligned_cols=174 Identities=21% Similarity=0.181 Sum_probs=102.6
Q ss_pred CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccc-----------cc--cCCccCceEEEeec--cCc-c
Q 039786 5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLL-----------SL--SSPPQYLQRLYLTG--NMK-K 68 (210)
Q Consensus 5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----------~~--~~~~~~L~~L~l~~--~~~-~ 68 (210)
++.+.++.+ ..........+.+.. |+++.+.+.......... .. ....++|++|+++| .+. .
T Consensus 61 ~ltki~l~~-~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKN-VTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccc-eecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 344444443 333444455566555 888888775543211110 00 01123799999998 333 2
Q ss_pred CChhhh-cCCCccEEEEEeecCCCcchhhh-hcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceee-EEcc
Q 039786 69 LPDWIF-KLKNLIRLGLELSGLAEEPIRVL-QASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEK 145 (210)
Q Consensus 69 ~p~~~~-~l~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~ 145 (210)
+|..++ .+|+|+.|.+.+-.+..+.+..+ .++|+|..|||+++.... + .+...+++|+.|.+.+...-..- -...
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 555555 56999999999877555544444 489999999998554332 1 35556778888877665422100 0112
Q ss_pred CCCCcccEEEeccCCCCCcccccc-------cccccccceeeecc
Q 039786 146 GAVPDIRELRIGPCPLLMEIPIGI-------EHLKNLKLLKFAGM 183 (210)
Q Consensus 146 ~~~~~L~~L~i~~~~~l~~lp~~l-------~~l~~L~~l~l~~~ 183 (210)
-.+.+|+.|||+.-..... +..+ ..+|+|+.|+.++.
T Consensus 217 F~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCc
Confidence 3589999999997663321 1111 24788888888774
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.85 E-value=2.9e-06 Score=66.89 Aligned_cols=183 Identities=18% Similarity=0.167 Sum_probs=110.4
Q ss_pred CCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecCccc--------------------------ccccccccCCcc
Q 039786 3 LRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTSKEE--------------------------ILDLLSLSSPPQ 55 (210)
Q Consensus 3 L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------------------------~~~~~~~~~~~~ 55 (210)
.++|++|+++| .......+.....+..+++.+...+|...+ +.++..++....
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 57889999998 333334444445555566666555554322 111111111122
Q ss_pred CceEEEeec--cCccCC--hhhhcCCCccEEEEEeec-CCCcchhhhh-cCCCccEEEecCccCC--cceEecCCCCCcc
Q 039786 56 YLQRLYLTG--NMKKLP--DWIFKLKNLIRLGLELSG-LAEEPIRVLQ-ASPNLLEILLTGTYDY--ELFHFEAGWFPKL 127 (210)
Q Consensus 56 ~L~~L~l~~--~~~~~p--~~~~~l~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L 127 (210)
.|+.|...+ .++..+ .-....++|+.|.+..|. +++..+..++ +.+.|+.+++..|..+ .++......++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 566666555 222211 112466889999999887 6666666666 6788888888744322 2233445678899
Q ss_pred cEEEecccCcceee-----EEccCCCCcccEEEeccCCCCC-cccccccccccccceeeecchH
Q 039786 128 QKLLLWDFIAVKSV-----IIEKGAVPDIRELRIGPCPLLM-EIPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 128 ~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~i~~~~~l~-~lp~~l~~l~~L~~l~l~~~~~ 185 (210)
+.+.++.|..+..- .....++..|+.+.+.+|+.+. ..-..+..+++|+.+++.+|..
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 99988877654432 1222357789999999998543 2333456778999999999865
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.8e-05 Score=42.83 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=23.7
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCC
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAE 91 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~ 91 (210)
+|++|++.+ .++.+|..++.+++|+.|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 577777776 666676556777777777777776654
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.76 E-value=3.9e-07 Score=74.31 Aligned_cols=160 Identities=17% Similarity=0.200 Sum_probs=107.5
Q ss_pred CCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcch
Q 039786 16 GNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPI 94 (210)
Q Consensus 16 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~ 94 (210)
.....++..+..+..|+.+.++.|..... ...++.+. .|.+++|+. .++.+|..+..+ -|+.|-+++|+++..+
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~r~i--p~~i~~L~-~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp- 159 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCIRTI--PEAICNLE-ALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLP- 159 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccceec--chhhhhhh-HHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCC-
Confidence 34445555566666666666665332222 23345554 677778876 677788777776 5888888888876654
Q ss_pred hhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCccccccccccc
Q 039786 95 RVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKN 174 (210)
Q Consensus 95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~ 174 (210)
..++..+.|..|+.+.+ ....++.....+.+|+.|.+.... +..++.+.. --.|..|++++|. +..+|-.+.++..
T Consensus 160 ~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScNk-is~iPv~fr~m~~ 235 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCNK-ISYLPVDFRKMRH 235 (722)
T ss_pred cccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccCc-eeecchhhhhhhh
Confidence 44567788888877633 233455555667788888777543 444555444 3457888988666 8899999999999
Q ss_pred ccceeeecch
Q 039786 175 LKLLKFAGMV 184 (210)
Q Consensus 175 L~~l~l~~~~ 184 (210)
|++|.+.++|
T Consensus 236 Lq~l~LenNP 245 (722)
T KOG0532|consen 236 LQVLQLENNP 245 (722)
T ss_pred heeeeeccCC
Confidence 9999999976
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.73 E-value=1.6e-06 Score=68.21 Aligned_cols=183 Identities=18% Similarity=0.201 Sum_probs=103.0
Q ss_pred CCCCcEEEEEecCCCcchHHH-HhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccC---------------
Q 039786 3 LRQLRKLSIRPQNGNGKDLCG-LIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNM--------------- 66 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------- 66 (210)
.++|+.|++..+...+..... ....+++|+++.+++|..+....+..+..=...++.+.+.|+.
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL 268 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence 467788887642223333334 3446799999999999876553333222111123333333211
Q ss_pred -------------ccCChh--hhcCCCccEEEEEeec-CCCcchhhhh-cCCCccEEEecCccCCcce--EecCCCCCcc
Q 039786 67 -------------KKLPDW--IFKLKNLIRLGLELSG-LAEEPIRVLQ-ASPNLLEILLTGTYDYELF--HFEAGWFPKL 127 (210)
Q Consensus 67 -------------~~~p~~--~~~l~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L 127 (210)
+....| -..+..|++|+.++|. ++......++ +.++|+.+.+..|..-... ..-..+++.|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 110001 1235677777777776 5555555555 5677777777755422211 1123456778
Q ss_pred cEEEecccCcceee--EEccCCCCcccEEEeccCCCCCcc-----cccccccccccceeeecchH
Q 039786 128 QKLLLWDFIAVKSV--IIEKGAVPDIRELRIGPCPLLMEI-----PIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 128 ~~L~l~~~~~l~~~--~~~~~~~~~L~~L~i~~~~~l~~l-----p~~l~~l~~L~~l~l~~~~~ 185 (210)
+.+++.+|...... ......++.|+.+.++.|...++- ..+-..+..|..+++.+||.
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 88877776543322 111235788999999988755432 22224556788999999875
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.72 E-value=2.4e-05 Score=63.20 Aligned_cols=150 Identities=25% Similarity=0.311 Sum_probs=87.9
Q ss_pred CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEE
Q 039786 5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLG 83 (210)
Q Consensus 5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~ 83 (210)
+|+.|+++. .....++..++.+++|+.|+++.|........ ....+ .|+.|.+++ .+..+|..++....|+.|.
T Consensus 141 nL~~L~l~~--N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~--~~~~~-~L~~L~ls~N~i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 141 NLKELDLSD--NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL--LSNLS-NLNNLDLSGNKISDLPPEIELLSALEELD 215 (394)
T ss_pred hcccccccc--cchhhhhhhhhccccccccccCCchhhhhhhh--hhhhh-hhhheeccCCccccCchhhhhhhhhhhhh
Confidence 566677664 33344445567777777777776544322111 11233 677777777 6677776555666677777
Q ss_pred EEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCC
Q 039786 84 LELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLM 163 (210)
Q Consensus 84 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~ 163 (210)
+.+|.+.. .+..+..++++..+.+.+.. ...+.......++++.|++.++. +..+.. .+...+++.+++.++....
T Consensus 216 ~~~N~~~~-~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 216 LSNNSIIE-LLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hcCCccee-cchhhhhcccccccccCCce-eeeccchhccccccceecccccc-cccccc-ccccCccCEEeccCccccc
Confidence 77774211 13455566666666543221 11112334556778888887654 444443 5678899999999876433
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.70 E-value=8.3e-06 Score=62.91 Aligned_cols=182 Identities=21% Similarity=0.209 Sum_probs=102.0
Q ss_pred CCCCcEEEEEe--cCCCcchH-------HHHhhcCCCCceEEEEecCccccc--ccccc-cCCccCceEEEeec-cCccC
Q 039786 3 LRQLRKLSIRP--QNGNGKDL-------CGLIANLKNLESLTVEMTSKEEIL--DLLSL-SSPPQYLQRLYLTG-NMKKL 69 (210)
Q Consensus 3 L~~L~~L~l~~--~~~~~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~-~~~~~~L~~L~l~~-~~~~~ 69 (210)
.++||+.++++ .......+ .+++...+.|+.++++.|...+.. .+..+ .+.. .|++|.+.+ .+...
T Consensus 57 ~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~~ 135 (382)
T KOG1909|consen 57 KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCT-DLEELYLNNCGLGPE 135 (382)
T ss_pred cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhcc-CHHHHhhhcCCCChh
Confidence 34666666665 22222222 233444568888888876543221 12222 2233 688888876 33211
Q ss_pred -----C---------hhhhcCCCccEEEEEeecCCCcchhh----hhcCCCccEEEec-CccCCcceEe---cCCCCCcc
Q 039786 70 -----P---------DWIFKLKNLIRLGLELSGLAEEPIRV----LQASPNLLEILLT-GTYDYELFHF---EAGWFPKL 127 (210)
Q Consensus 70 -----p---------~~~~~l~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~-~~~~~~~~~~---~~~~~~~L 127 (210)
. .-+..-+.|+++....|.+.+.+... +...+.|+.+.+. +....+.+.. ....+|+|
T Consensus 136 ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~L 215 (382)
T KOG1909|consen 136 AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHL 215 (382)
T ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcc
Confidence 1 11234567888888888766655332 3456788888887 4333332211 23456889
Q ss_pred cEEEecccCccee----eEEccCCCCcccEEEeccCCCCCcccc----cc-cccccccceeeecchH
Q 039786 128 QKLLLWDFIAVKS----VIIEKGAVPDIRELRIGPCPLLMEIPI----GI-EHLKNLKLLKFAGMVK 185 (210)
Q Consensus 128 ~~L~l~~~~~l~~----~~~~~~~~~~L~~L~i~~~~~l~~lp~----~l-~~l~~L~~l~l~~~~~ 185 (210)
+.|++.++..... +......|++|+.|.+++|..-..... .+ ...++|+.+.+.+|..
T Consensus 216 evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 216 EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred eeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 9999887653221 111234688899999999973322222 22 2468899999888764
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.53 E-value=8e-06 Score=66.42 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=17.2
Q ss_pred ccEEEeccCCCCCcccccccccccccceeeec
Q 039786 151 IRELRIGPCPLLMEIPIGIEHLKNLKLLKFAG 182 (210)
Q Consensus 151 L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~ 182 (210)
|+.+++..++ +...+.++..+..++.+++.+
T Consensus 234 L~~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 234 LRELYLSGNR-ISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHhcccCc-cccccccccccccccccchhh
Confidence 5666666666 333334455555555555554
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=0.00012 Score=39.59 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=23.6
Q ss_pred CcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 149 PDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 149 ~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
++|++|++.+|. ++.+|..++.+++|+.|++++++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 457777777776 66677667777777777777764
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.34 E-value=0.00029 Score=56.55 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=39.1
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeec-CCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSG-LAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW 133 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 133 (210)
++++|++++ .++.+|. -..+|+.|.+++|. ++..+ ..+ .++|++|.++.|.....++ ++|+.|.+.
T Consensus 53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~ 120 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIK 120 (426)
T ss_pred CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccccc------cccceEEeC
Confidence 788888887 6777772 23468888888875 43322 222 2578888887553322221 345666654
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.31 E-value=6.7e-06 Score=69.27 Aligned_cols=106 Identities=18% Similarity=0.127 Sum_probs=72.0
Q ss_pred hhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcc
Q 039786 73 IFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDI 151 (210)
Q Consensus 73 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 151 (210)
+..++.|+.|+|+.|+++. ...+..++.|+.|+|+ ||... .......++. |+.|.+.++. ++.+. ....+.+|
T Consensus 183 Lqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~-l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNA-LTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhcc-ccccchhhhh-heeeeecccH-HHhhh-hHHhhhhh
Confidence 3457889999999998766 4488899999999998 66422 1223344554 8888888654 33221 23467889
Q ss_pred cEEEeccCCCC--CcccccccccccccceeeecchH
Q 039786 152 RELRIGPCPLL--MEIPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 152 ~~L~i~~~~~l--~~lp~~l~~l~~L~~l~l~~~~~ 185 (210)
+.|++++|-.. +++ .-+..+..|+.|++.++|.
T Consensus 257 ~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCcc
Confidence 99999887621 222 1235778899999999775
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00013 Score=55.69 Aligned_cols=174 Identities=21% Similarity=0.213 Sum_probs=93.2
Q ss_pred CCCCCcEEEEEecCCCcchHHHHh-hcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc--C-ChhhhcC
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLI-ANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK--L-PDWIFKL 76 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--~-p~~~~~l 76 (210)
+||.|+.|+++. +.....+ ..+ ..+.+|++|.+.+...........+..+| .+++|+++. .... + ...+...
T Consensus 95 ~lP~l~~LNls~-N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP-~vtelHmS~N~~rq~n~Dd~c~e~~ 171 (418)
T KOG2982|consen 95 QLPALTTLNLSC-NSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP-KVTELHMSDNSLRQLNLDDNCIEDW 171 (418)
T ss_pred cCccceEeeccC-CcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcch-hhhhhhhccchhhhhcccccccccc
Confidence 689999999995 2222222 222 45679999999875332211112233445 677776654 2221 1 1122222
Q ss_pred -CCccEEEEEeecCCCc-chhhh-hcCCCccEEEecCc-cCCcceEecCCCCCcccEEEecccCcceeeE--EccCCCCc
Q 039786 77 -KNLIRLGLELSGLAEE-PIRVL-QASPNLLEILLTGT-YDYELFHFEAGWFPKLQKLLLWDFIAVKSVI--IEKGAVPD 150 (210)
Q Consensus 77 -~~L~~L~l~~~~l~~~-~~~~l-~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~ 150 (210)
+.+++|++..|..... ..-.+ .-+|++..+-+..+ .......-+.+.||.+..|+++.. .+.+|. .+...|++
T Consensus 172 s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~ 250 (418)
T KOG2982|consen 172 STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQ 250 (418)
T ss_pred chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCch
Confidence 3666777777642111 11122 25788888877633 222222233456777777776643 344442 23457899
Q ss_pred ccEEEeccCCCCCccccc------cccccccccee
Q 039786 151 IRELRIGPCPLLMEIPIG------IEHLKNLKLLK 179 (210)
Q Consensus 151 L~~L~i~~~~~l~~lp~~------l~~l~~L~~l~ 179 (210)
|..|.+..+|....+-.+ ++.+++++.|+
T Consensus 251 l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 251 LVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 999999998854433222 24455555544
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.16 E-value=7.3e-06 Score=69.07 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=70.9
Q ss_pred HHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCccEEEEEeecCCCcchhhhhc
Q 039786 22 CGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLIRLGLELSGLAEEPIRVLQA 99 (210)
Q Consensus 22 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~~L~l~~~~l~~~~~~~l~~ 99 (210)
-.++.-++.|++|++++|.... .+.+.-++ +|++|+|+. ++..+|.. +..+ +|+.|.+++|.++. +..+.+
T Consensus 180 D~SLqll~ale~LnLshNk~~~---v~~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie~ 252 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTK---VDNLRRLP-KLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT--LRGIEN 252 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhh---hHHHHhcc-cccccccccchhccccccchhhh-hheeeeecccHHHh--hhhHHh
Confidence 3455666888999998864433 23455566 899999987 77777752 2233 48999999988765 567788
Q ss_pred CCCccEEEec-CccCCcceEecCCCCCcccEEEecccC
Q 039786 100 SPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFI 136 (210)
Q Consensus 100 l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~ 136 (210)
+.+|+.|+++ |+...-.-......+..|+.|.+.+++
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8999999998 654332111112234566667766654
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.00098 Score=48.06 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=64.0
Q ss_pred CCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhh-cCCCccEEEEEeecCCC-cchhhhhcCCCccEE
Q 039786 30 NLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIF-KLKNLIRLGLELSGLAE-EPIRVLQASPNLLEI 106 (210)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~-~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L 106 (210)
+...+++..++.... ..+..++ .|..|.++. .++.+...+. .+++|+.|.+++|.+.. .++..+..+|.|++|
T Consensus 43 ~~d~iDLtdNdl~~l---~~lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL---DNLPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhhc---ccCCCcc-ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 445566666544333 3355555 788888887 7777654444 55789999999988655 345667788888888
Q ss_pred EecCccCCcce---EecCCCCCcccEEEecccC
Q 039786 107 LLTGTYDYELF---HFEAGWFPKLQKLLLWDFI 136 (210)
Q Consensus 107 ~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~ 136 (210)
.+-.......- ......+|+|++|++.+..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77522111111 1223457888888876543
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.08 E-value=4.1e-05 Score=63.12 Aligned_cols=113 Identities=24% Similarity=0.217 Sum_probs=65.2
Q ss_pred hhcCCCCceEEEEecCcccccccccc-cCCccCceEEEeec-c--CccCC----hhhhcCCCccEEEEEeec-CCCcchh
Q 039786 25 IANLKNLESLTVEMTSKEEILDLLSL-SSPPQYLQRLYLTG-N--MKKLP----DWIFKLKNLIRLGLELSG-LAEEPIR 95 (210)
Q Consensus 25 l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~-~--~~~~p----~~~~~l~~L~~L~l~~~~-l~~~~~~ 95 (210)
....++|+.+.+..+.......+..+ ...+ +|+.|++++ + ....+ .....+++|+.|++..+. +++..+.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCP-NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCc-hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 33457777777777655544332222 2233 777777764 1 11111 122345777788888777 6666666
Q ss_pred hhhc-CCCccEEEecCccC--CcceEecCCCCCcccEEEecccCcc
Q 039786 96 VLQA-SPNLLEILLTGTYD--YELFHFEAGWFPKLQKLLLWDFIAV 138 (210)
Q Consensus 96 ~l~~-l~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l 138 (210)
.++. +++|+.|.+.+|.. ...+......++.|+.|++..|..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 6654 67788777655542 2223333455677788877777654
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.01 E-value=5.5e-05 Score=62.34 Aligned_cols=131 Identities=25% Similarity=0.248 Sum_probs=79.8
Q ss_pred CCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEec-Ccccccc---cccccCCccCceEEEeec-c-Ccc--CChhh
Q 039786 3 LRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMT-SKEEILD---LLSLSSPPQYLQRLYLTG-N-MKK--LPDWI 73 (210)
Q Consensus 3 L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~---~~~~~~~~~~L~~L~l~~-~-~~~--~p~~~ 73 (210)
.++|+.|.+.. .......+.......++|+.|+++++ ....... ........ +|+.+++.. . ++. +....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICR-KLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcC-CcCccchhhhhccCchhHHHHH
Confidence 46788888876 22233335667778899999999873 2221111 11112233 789999887 3 443 22222
Q ss_pred hcCCCccEEEEEeec-CCCcchhhhh-cCCCccEEEecCccCC--cceEecCCCCCcccEEEecc
Q 039786 74 FKLKNLIRLGLELSG-LAEEPIRVLQ-ASPNLLEILLTGTYDY--ELFHFEAGWFPKLQKLLLWD 134 (210)
Q Consensus 74 ~~l~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~ 134 (210)
..+++|+.|.+..|. +++..+..++ .+++|+.|+++.|... ..+......+++++.+.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 348899999988888 7887776665 6899999999855432 11111123366666655443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.65 E-value=0.002 Score=46.57 Aligned_cols=84 Identities=23% Similarity=0.225 Sum_probs=55.1
Q ss_pred HHhhcCCCCceEEEEecCccccccccccc-CCccCceEEEeec-cCccCCh--hhhcCCCccEEEEEeecCCCcc---hh
Q 039786 23 GLIANLKNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKKLPD--WIFKLKNLIRLGLELSGLAEEP---IR 95 (210)
Q Consensus 23 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~p~--~~~~l~~L~~L~l~~~~l~~~~---~~ 95 (210)
+-+..+..|.+|.+.+|.. ..++.. +. ..+ +|+.|.+.+ .+.++-+ ....+|.|++|.+-+|.+.... ..
T Consensus 58 ~~lp~l~rL~tLll~nNrI-t~I~p~-L~~~~p-~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y 134 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRI-TRIDPD-LDTFLP-NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY 134 (233)
T ss_pred ccCCCccccceEEecCCcc-eeeccc-hhhhcc-ccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence 3356677888888887543 333222 22 234 788999887 5554322 4567789999999888765532 23
Q ss_pred hhhcCCCccEEEec
Q 039786 96 VLQASPNLLEILLT 109 (210)
Q Consensus 96 ~l~~l~~L~~L~l~ 109 (210)
.+..+|+|+.|+..
T Consensus 135 vl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 135 VLYKLPSLRTLDFQ 148 (233)
T ss_pred EEEecCcceEeehh
Confidence 45688999999876
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.62 E-value=0.0067 Score=46.02 Aligned_cols=181 Identities=17% Similarity=0.122 Sum_probs=106.9
Q ss_pred CCCCCcEEEEEe---cCCCcchHHHHhhcCCCCceEEEEecCcccccc--c----------ccccCCccCceEEEeec-c
Q 039786 2 KLRQLRKLSIRP---QNGNGKDLCGLIANLKNLESLTVEMTSKEEILD--L----------LSLSSPPQYLQRLYLTG-N 65 (210)
Q Consensus 2 ~L~~L~~L~l~~---~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~----------~~~~~~~~~L~~L~l~~-~ 65 (210)
++|+|++.++|. .......+-+.+++.++|.||.+++|...+... + ...+.-| .|+...... .
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp-~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKP-KLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCC-CceEEEeccch
Confidence 468899999997 222344445667778999999999887643221 0 1122334 688876654 5
Q ss_pred CccCCh-----hhhcCCCccEEEEEeecCCCcchh-----hhhcCCCccEEEec-CccCCc---ceEecCCCCCcccEEE
Q 039786 66 MKKLPD-----WIFKLKNLIRLGLELSGLAEEPIR-----VLQASPNLLEILLT-GTYDYE---LFHFEAGWFPKLQKLL 131 (210)
Q Consensus 66 ~~~~p~-----~~~~l~~L~~L~l~~~~l~~~~~~-----~l~~l~~L~~L~l~-~~~~~~---~~~~~~~~~~~L~~L~ 131 (210)
+...|. .+..-.+|+.+.+..|.|+..... .+....+|+.|+|. |.+... .+.......+.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 555443 223336899999999998776433 23357899999997 443211 1111122346678888
Q ss_pred ecccCcceee------EEccCCCCcccEEEeccCCCCC-c-----ccccc-cccccccceeeecc
Q 039786 132 LWDFIAVKSV------IIEKGAVPDIRELRIGPCPLLM-E-----IPIGI-EHLKNLKLLKFAGM 183 (210)
Q Consensus 132 l~~~~~l~~~------~~~~~~~~~L~~L~i~~~~~l~-~-----lp~~l-~~l~~L~~l~l~~~ 183 (210)
+.+|--...- .+....+|+|..|...+|.+-. . +|.-. ..+|-|..+...++
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 8887421110 1222346888888888876311 1 22111 35666777766654
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0021 Score=48.00 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=16.1
Q ss_pred cCCCccEEEEEee--cCCCcchhhhhcCCCccEEEec
Q 039786 75 KLKNLIRLGLELS--GLAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 75 ~l~~L~~L~l~~~--~l~~~~~~~l~~l~~L~~L~l~ 109 (210)
.+++|++|.++.| +++..-......+|+|+++.++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls 99 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLS 99 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeec
Confidence 3456666666665 2222211122233556665555
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.00013 Score=55.12 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=62.6
Q ss_pred CCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCc-chhhhhcCCCccE
Q 039786 28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEE-PIRVLQASPNLLE 105 (210)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~ 105 (210)
+.+.+.|++++|.... +.....++ .|+.|.|+- +++.+. .+..+++|+.|+|+.|.|.+. .+.++.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~D---Isic~kMp-~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---ISICEKMP-LLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH---HHHHHhcc-cceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 4566677777764422 23345566 788888876 666664 567788888888888877664 3567778888888
Q ss_pred EEec-CccCCcceE----ecCCCCCcccEEE
Q 039786 106 ILLT-GTYDYELFH----FEAGWFPKLQKLL 131 (210)
Q Consensus 106 L~l~-~~~~~~~~~----~~~~~~~~L~~L~ 131 (210)
|.|. |...+..-. .....+|+|++|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8887 333221100 0123467777765
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.17 E-value=0.00059 Score=55.61 Aligned_cols=8 Identities=38% Similarity=0.335 Sum_probs=2.8
Q ss_pred ccEEEEEe
Q 039786 79 LIRLGLEL 86 (210)
Q Consensus 79 L~~L~l~~ 86 (210)
|+.+++.+
T Consensus 164 L~~l~l~~ 171 (414)
T KOG0531|consen 164 LKLLDLSY 171 (414)
T ss_pred hhcccCCc
Confidence 33333333
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.00014 Score=54.91 Aligned_cols=102 Identities=23% Similarity=0.255 Sum_probs=46.9
Q ss_pred CCCccEEEEEeecCCCcchhhhhcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceee--EEccCCCCccc
Q 039786 76 LKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV--IIEKGAVPDIR 152 (210)
Q Consensus 76 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~ 152 (210)
+.+.+.|+.++|.+++ +.....||.|+.|.|+ |.... + .....|++|++|-+..+. +.++ .+....+|+|+
T Consensus 18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIss--L-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISS--L-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccH--HHHHHhcccceeEEeecccccc--c-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence 3445555555555433 3333455666665555 22110 0 122234455554443221 1110 01123467777
Q ss_pred EEEeccCCCCCccccc-----ccccccccceeeecc
Q 039786 153 ELRIGPCPLLMEIPIG-----IEHLKNLKLLKFAGM 183 (210)
Q Consensus 153 ~L~i~~~~~l~~lp~~-----l~~l~~L~~l~l~~~ 183 (210)
.|++..|+.-..-+.. +..+|+|++|+=...
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 7777777654433322 245677776665443
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.60 E-value=0.0015 Score=44.34 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=43.9
Q ss_pred hcCCCCceEEEEecCccccccccccc-CCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCc
Q 039786 26 ANLKNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNL 103 (210)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 103 (210)
....+|...++++|......+ .+. .++ ..+.|++.. .++++|..+..++.|+.|+++.|.+..++ ..+..+.++
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~--kft~kf~-t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p-~vi~~L~~l 125 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPK--KFTIKFP-TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP-RVIAPLIKL 125 (177)
T ss_pred hCCceEEEEecccchhhhCCH--HHhhccc-hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch-HHHHHHHhH
Confidence 334455556666644332211 222 222 566667766 66677777777777777777777765543 333336666
Q ss_pred cEEEe
Q 039786 104 LEILL 108 (210)
Q Consensus 104 ~~L~l 108 (210)
.+|+.
T Consensus 126 ~~Lds 130 (177)
T KOG4579|consen 126 DMLDS 130 (177)
T ss_pred HHhcC
Confidence 66554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.48 E-value=0.0066 Score=45.44 Aligned_cols=81 Identities=25% Similarity=0.236 Sum_probs=47.7
Q ss_pred CCCCceEEEEecCcccccccccccCCccCceEEEeec---cCc-cCChhhhcCCCccEEEEEeecCCC-cchhhhhcCCC
Q 039786 28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG---NMK-KLPDWIFKLKNLIRLGLELSGLAE-EPIRVLQASPN 102 (210)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~-~~p~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~ 102 (210)
+.+|+.|++.++.... +..+..++ +|+.|.++. .+. .++.....+++|+++++++|++.. ..+..+..+++
T Consensus 42 ~~~le~ls~~n~gltt---~~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT---LTNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccceee---cccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3556666655533322 34455566 788888765 222 244344555888888888887764 22344556677
Q ss_pred ccEEEecCcc
Q 039786 103 LLEILLTGTY 112 (210)
Q Consensus 103 L~~L~l~~~~ 112 (210)
|..|++.+|.
T Consensus 118 L~~Ldl~n~~ 127 (260)
T KOG2739|consen 118 LKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCC
Confidence 7777776554
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.02 E-value=0.013 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=15.0
Q ss_pred cccEEEeccCCCCCcccccccc
Q 039786 150 DIRELRIGPCPLLMEIPIGIEH 171 (210)
Q Consensus 150 ~L~~L~i~~~~~l~~lp~~l~~ 171 (210)
+|++|++++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 47888888884 6677776543
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.76 E-value=0.011 Score=44.98 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=19.6
Q ss_pred cCCCccEEEEEeecCCCcchh----hhhcCCCccEEEecCc
Q 039786 75 KLKNLIRLGLELSGLAEEPIR----VLQASPNLLEILLTGT 111 (210)
Q Consensus 75 ~l~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~ 111 (210)
.||+|+..+++.|.+....+. .++.-+.|++|.+.|+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 456666666666654433222 2334566666666544
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.49 E-value=0.033 Score=23.25 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=8.4
Q ss_pred CcccEEEeccCCCCCccc
Q 039786 149 PDIRELRIGPCPLLMEIP 166 (210)
Q Consensus 149 ~~L~~L~i~~~~~l~~lp 166 (210)
++|+.|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356777777776 55544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.45 E-value=0.11 Score=34.62 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=42.3
Q ss_pred HhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCC
Q 039786 24 LIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPN 102 (210)
Q Consensus 24 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 102 (210)
.+.+.++|+.+.+.. .....+-..+.... +|+.+.+.+.+..++. .+..+++|+.+.+.. .+...+...+..+++
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~-~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCT-SLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-T-T-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccc-ccccccccccccccceeeeecccccccccccc-ccccccccccccccc
Confidence 345666777777753 23334444555555 6888887765555544 345566788888855 344444456667788
Q ss_pred ccEEEec
Q 039786 103 LLEILLT 109 (210)
Q Consensus 103 L~~L~l~ 109 (210)
|+.+.+.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 8888774
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=0.003 Score=45.55 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=24.5
Q ss_pred CCCcccEEEeccCCCCCccc-ccccccccccceeeecchH
Q 039786 147 AVPDIRELRIGPCPLLMEIP-IGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 147 ~~~~L~~L~i~~~~~l~~lp-~~l~~l~~L~~l~l~~~~~ 185 (210)
..++|+.|+|++|+.+++-. ..+..+++|+.+.+.+.+.
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 35677777777777665321 1235667777777777553
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=0.0083 Score=43.37 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=37.8
Q ss_pred cccccCCccCceEEEeec--cCcc--CChhh-hcCCCccEEEEEeec-CCCcchhhhhcCCCccEEEec
Q 039786 47 LLSLSSPPQYLQRLYLTG--NMKK--LPDWI-FKLKNLIRLGLELSG-LAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 47 ~~~~~~~~~~L~~L~l~~--~~~~--~p~~~-~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~ 109 (210)
++.+..+. .++.|.+.+ ++.. +. .+ +-.++|+.|+|++|. |++..+..+..+++|+.|.+.
T Consensus 118 le~L~~l~-~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 118 LEHLRDLR-SIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred HHHHhccc-hhhhheeccccchhhHHHH-HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 34444444 555666554 2221 11 11 234788888888887 888777788888888887775
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.80 E-value=0.021 Score=26.12 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=14.0
Q ss_pred CCCccEEEEEeecCCCcchhhhh
Q 039786 76 LKNLIRLGLELSGLAEEPIRVLQ 98 (210)
Q Consensus 76 l~~L~~L~l~~~~l~~~~~~~l~ 98 (210)
+++|+.|+|++|.++...+.+++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 36788888888887666555543
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.20 E-value=0.017 Score=39.44 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=67.9
Q ss_pred CCCCcEEEEEecCCCcchHHHHhh-cCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIA-NLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
..+|+..++++ .....+++.+. .++.++.|++.++ ...+.+.+ ++.++ .|+.|+++. .+...|..+..+.++.
T Consensus 52 ~~el~~i~ls~--N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~-aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 52 GYELTKISLSD--NGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMP-ALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred CceEEEEeccc--chhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhH-HhhhcccccCccccchHHHHHHHhHH
Confidence 34677778875 44555665554 4568899999884 44444444 78888 899999998 7777888888899999
Q ss_pred EEEEEeecCCCcchhhh-hcCCCccEE
Q 039786 81 RLGLELSGLAEEPIRVL-QASPNLLEI 106 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l-~~l~~L~~L 106 (210)
.|+..++.+...+...+ +..+.+..+
T Consensus 127 ~Lds~~na~~eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 127 MLDSPENARAEIDVDLFYSSLPALIKL 153 (177)
T ss_pred HhcCCCCccccCcHHHhccccHHHHHh
Confidence 99998887555444322 234444443
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.58 E-value=0.078 Score=24.75 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=16.4
Q ss_pred CCCccEEEEEeec-CCCcchhhhh
Q 039786 76 LKNLIRLGLELSG-LAEEPIRVLQ 98 (210)
Q Consensus 76 l~~L~~L~l~~~~-l~~~~~~~l~ 98 (210)
+++|++|+|++|. +++..+..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 4678888888887 7776655544
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.02 E-value=0.62 Score=30.88 Aligned_cols=102 Identities=10% Similarity=0.104 Sum_probs=45.5
Q ss_pred ccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcc
Q 039786 50 LSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKL 127 (210)
Q Consensus 50 ~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L 127 (210)
+.... +|+.+.+...+..++. .+..+++|+.+.+..+ +...+...+...++++.+.+.+. ...+.. ....++++
T Consensus 8 F~~~~-~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCS-NLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-T-T--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTE
T ss_pred HhCCC-CCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccc
Confidence 44444 6777777655555443 4566678888888764 55555566777777888887531 111111 12335677
Q ss_pred cEEEecccCcceeeEEc-cCCCCcccEEEecc
Q 039786 128 QKLLLWDFIAVKSVIIE-KGAVPDIRELRIGP 158 (210)
Q Consensus 128 ~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~ 158 (210)
+.+.+.. .+..+... .... .|+.+.+..
T Consensus 84 ~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 7777643 22322211 1122 566666553
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.04 E-value=0.21 Score=23.18 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=11.8
Q ss_pred CCCccEEEEEeecCCCcchh
Q 039786 76 LKNLIRLGLELSGLAEEPIR 95 (210)
Q Consensus 76 l~~L~~L~l~~~~l~~~~~~ 95 (210)
+++|++|++.+|.++..+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666677766666554433
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.04 E-value=0.21 Score=23.18 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=11.8
Q ss_pred CCCccEEEEEeecCCCcchh
Q 039786 76 LKNLIRLGLELSGLAEEPIR 95 (210)
Q Consensus 76 l~~L~~L~l~~~~l~~~~~~ 95 (210)
+++|++|++.+|.++..+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666677766666554433
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.18 E-value=0.82 Score=21.68 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=15.5
Q ss_pred CCccEEEEEeecCCCcchhhhh
Q 039786 77 KNLIRLGLELSGLAEEPIRVLQ 98 (210)
Q Consensus 77 ~~L~~L~l~~~~l~~~~~~~l~ 98 (210)
++|++|+|++|.+.......+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5788888888887665554443
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.67 E-value=3.1 Score=19.45 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=11.0
Q ss_pred CCCccEEEEEeecCCC
Q 039786 76 LKNLIRLGLELSGLAE 91 (210)
Q Consensus 76 l~~L~~L~l~~~~l~~ 91 (210)
+++|+.|++..|+|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3567778887777644
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.23 E-value=3.9 Score=19.14 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=13.2
Q ss_pred CcccEEEeccCCCCCcccc
Q 039786 149 PDIRELRIGPCPLLMEIPI 167 (210)
Q Consensus 149 ~~L~~L~i~~~~~l~~lp~ 167 (210)
++|+.|.+++|. ++.+|.
T Consensus 2 ~~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred cccceeecCCCc-cccCcc
Confidence 457788888777 777775
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.28 E-value=4.6 Score=34.09 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=42.8
Q ss_pred cCCCccEEEEEeecCCC-cchhhhh-cCCCccEEEecCc--cCCcceEecCCCCCcccEEEecccCcceeeEEc------
Q 039786 75 KLKNLIRLGLELSGLAE-EPIRVLQ-ASPNLLEILLTGT--YDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE------ 144 (210)
Q Consensus 75 ~l~~L~~L~l~~~~l~~-~~~~~l~-~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~------ 144 (210)
..+.+..+.+++|++.. +.+..+. ..|.|+.|+|++. ...........+...|++|.+.+++-.+.....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 45677777777777544 3334444 5677888887733 111111222233456777777776644322111
Q ss_pred -cCCCCcccEEE
Q 039786 145 -KGAVPDIRELR 155 (210)
Q Consensus 145 -~~~~~~L~~L~ 155 (210)
...||.|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 12466666664
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.73 E-value=12 Score=31.75 Aligned_cols=64 Identities=25% Similarity=0.096 Sum_probs=32.0
Q ss_pred CCCCceEEEEecCcccccccccccCCccCceEEEeecc--CccCChhhh--cCCCccEEEEEeecCCC
Q 039786 28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGN--MKKLPDWIF--KLKNLIRLGLELSGLAE 91 (210)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~p~~~~--~l~~L~~L~l~~~~l~~ 91 (210)
.+.+..+.+++|.......+..++...++|..|+|.+. .-....++. ....|+.|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 35666666666554433333333322226777777662 111111332 23466777777776533
No 84
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=24.02 E-value=91 Score=14.29 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=3.9
Q ss_pred CcEEEEEe
Q 039786 6 LRKLSIRP 13 (210)
Q Consensus 6 L~~L~l~~ 13 (210)
||.|++..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 45555544
Done!