Query 039786
Match_columns 210
No_of_seqs 122 out of 1194
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 22:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.4E-20 4.9E-25 146.5 14.6 125 56-181 184-309 (328)
2 4fcg_A Uncharacterized protein 99.8 1.6E-19 5.4E-24 140.6 13.3 177 2-185 102-289 (328)
3 1ozn_A Reticulon 4 receptor; N 99.8 2.4E-18 8.2E-23 131.3 11.0 179 2-184 54-236 (285)
4 1ogq_A PGIP-2, polygalacturona 99.7 3.7E-18 1.3E-22 132.0 8.3 180 2-184 74-279 (313)
5 1ogq_A PGIP-2, polygalacturona 99.7 8.7E-18 3E-22 130.0 9.4 130 4-136 50-185 (313)
6 1p9a_G Platelet glycoprotein I 99.7 7.3E-17 2.5E-21 123.5 10.3 174 4-184 31-206 (290)
7 2z66_A Variable lymphocyte rec 99.7 1.5E-17 5.1E-22 128.1 6.3 178 2-183 50-258 (306)
8 2xwt_C Thyrotropin receptor; s 99.7 4E-16 1.4E-20 116.0 13.4 176 4-184 31-216 (239)
9 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-16 4.2E-21 121.8 10.7 178 3-184 31-212 (285)
10 3o6n_A APL1; leucine-rich repe 99.7 2.9E-16 9.9E-21 124.8 12.9 104 3-109 68-173 (390)
11 2o6q_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 120.0 11.0 176 4-184 37-216 (270)
12 2z66_A Variable lymphocyte rec 99.7 6.7E-17 2.3E-21 124.4 8.6 177 4-184 28-210 (306)
13 3oja_B Anopheles plasmodium-re 99.7 3E-16 1E-20 131.3 12.9 104 3-109 74-179 (597)
14 3rgz_A Protein brassinosteroid 99.7 1.4E-16 4.7E-21 136.9 10.9 104 3-109 441-546 (768)
15 3vq2_A TLR4, TOLL-like recepto 99.7 3.1E-17 1.1E-21 137.2 6.4 177 2-184 348-556 (606)
16 3rfs_A Internalin B, repeat mo 99.7 3.1E-16 1E-20 118.9 10.2 174 2-184 39-216 (272)
17 2id5_A Lingo-1, leucine rich r 99.7 3.3E-16 1.1E-20 127.5 11.0 179 2-184 54-259 (477)
18 3rgz_A Protein brassinosteroid 99.7 1.2E-16 4.1E-21 137.2 8.0 128 56-183 395-548 (768)
19 4ezg_A Putative uncharacterize 99.7 3.4E-16 1.2E-20 113.1 9.1 152 26-185 41-193 (197)
20 2z62_A TOLL-like receptor 4, v 99.7 2.8E-16 9.6E-21 119.2 9.0 126 56-183 101-234 (276)
21 1h6u_A Internalin H; cell adhe 99.7 5E-16 1.7E-20 119.8 10.5 166 3-184 62-228 (308)
22 2id5_A Lingo-1, leucine rich r 99.7 3.7E-15 1.3E-19 121.3 15.7 178 3-184 151-331 (477)
23 3vq2_A TLR4, TOLL-like recepto 99.7 3.1E-16 1E-20 131.2 9.4 178 2-183 326-507 (606)
24 3zyi_A Leucine-rich repeat-con 99.6 8.9E-16 3.1E-20 124.3 11.6 37 147-184 264-301 (452)
25 3zyj_A Leucine-rich repeat-con 99.6 1.3E-15 4.5E-20 122.9 12.2 177 2-184 86-290 (440)
26 1h6u_A Internalin H; cell adhe 99.6 3E-16 1E-20 121.1 8.0 168 2-185 39-207 (308)
27 3o6n_A APL1; leucine-rich repe 99.6 6.7E-16 2.3E-20 122.7 10.2 88 2-92 91-180 (390)
28 3v47_A TOLL-like receptor 5B a 99.6 1.1E-15 3.8E-20 123.6 11.5 112 71-183 293-405 (455)
29 2z80_A TOLL-like receptor 2, v 99.6 2.2E-16 7.6E-21 123.9 7.0 179 2-184 74-312 (353)
30 1wwl_A Monocyte differentiatio 99.6 5.6E-16 1.9E-20 119.7 9.0 177 2-185 93-286 (312)
31 4eco_A Uncharacterized protein 99.6 2.4E-16 8.2E-21 132.7 7.2 157 21-182 198-386 (636)
32 3zyi_A Leucine-rich repeat-con 99.6 1.7E-15 5.8E-20 122.7 11.8 174 4-182 75-251 (452)
33 4ezg_A Putative uncharacterize 99.6 7.9E-16 2.7E-20 111.2 8.9 149 2-160 42-192 (197)
34 3t6q_A CD180 antigen; protein- 99.6 4.7E-16 1.6E-20 130.1 8.7 156 2-160 348-511 (606)
35 3zyj_A Leucine-rich repeat-con 99.6 1.5E-15 5.2E-20 122.5 11.2 174 4-183 64-241 (440)
36 2z63_A TOLL-like receptor 4, v 99.6 5.7E-16 2E-20 128.5 8.4 178 2-184 345-529 (570)
37 3t6q_A CD180 antigen; protein- 99.6 1.4E-15 4.8E-20 127.2 10.7 85 24-109 320-408 (606)
38 3o53_A Protein LRIM1, AGAP0063 99.6 7.8E-16 2.7E-20 119.1 8.5 124 57-184 122-248 (317)
39 4eco_A Uncharacterized protein 99.6 2.3E-16 8E-21 132.8 6.0 177 1-183 203-412 (636)
40 1wwl_A Monocyte differentiatio 99.6 3E-16 1E-20 121.2 5.9 148 29-183 149-306 (312)
41 3oja_B Anopheles plasmodium-re 99.6 1.4E-15 4.7E-20 127.3 10.3 89 1-92 96-186 (597)
42 2z80_A TOLL-like receptor 2, v 99.6 7E-16 2.4E-20 121.1 7.9 177 4-184 52-233 (353)
43 1h6t_A Internalin B; cell adhe 99.6 1.4E-15 4.9E-20 116.3 9.1 167 2-184 44-211 (291)
44 4fmz_A Internalin; leucine ric 99.6 1.1E-15 3.9E-20 119.4 8.5 171 1-185 152-323 (347)
45 4ecn_A Leucine-rich repeat pro 99.6 1.1E-15 3.7E-20 132.2 8.9 158 21-184 440-630 (876)
46 2xwt_C Thyrotropin receptor; s 99.6 9.3E-15 3.2E-19 108.6 12.8 177 1-184 52-237 (239)
47 4ecn_A Leucine-rich repeat pro 99.6 9.1E-16 3.1E-20 132.7 8.2 176 1-183 445-654 (876)
48 4fmz_A Internalin; leucine ric 99.6 4E-15 1.4E-19 116.3 11.2 169 1-184 129-298 (347)
49 1xku_A Decorin; proteoglycan, 99.6 2.8E-15 9.7E-20 116.5 9.8 175 2-184 74-274 (330)
50 3oja_A Leucine-rich immune mol 99.6 2.6E-15 9E-20 122.7 10.0 124 57-184 122-248 (487)
51 3m19_A Variable lymphocyte rec 99.6 2.4E-15 8.4E-20 112.6 8.1 171 5-184 15-190 (251)
52 3v47_A TOLL-like receptor 5B a 99.6 3.8E-15 1.3E-19 120.5 9.8 34 56-89 130-166 (455)
53 2ft3_A Biglycan; proteoglycan, 99.6 2.9E-15 1E-19 116.6 8.1 59 124-184 216-275 (332)
54 2ast_B S-phase kinase-associat 99.6 3.5E-16 1.2E-20 121.8 2.0 179 2-183 91-282 (336)
55 1m9s_A Internalin B; cell inva 99.6 3.4E-15 1.1E-19 124.8 7.9 167 2-184 41-208 (605)
56 2o6q_A Variable lymphocyte rec 99.6 9.5E-15 3.3E-19 110.5 9.7 173 5-185 17-193 (270)
57 1xku_A Decorin; proteoglycan, 99.6 1.4E-14 4.7E-19 112.6 10.5 175 4-184 52-251 (330)
58 2z62_A TOLL-like receptor 4, v 99.6 2.7E-15 9.1E-20 113.8 6.2 176 4-184 28-211 (276)
59 3j0a_A TOLL-like receptor 5; m 99.6 3.9E-15 1.3E-19 129.1 7.8 179 3-183 23-214 (844)
60 4glp_A Monocyte differentiatio 99.6 1.5E-14 5.2E-19 111.5 10.3 83 4-88 91-180 (310)
61 3bz5_A Internalin-J, INLJ; leu 99.6 1.8E-14 6.2E-19 116.8 11.1 160 2-182 40-200 (457)
62 3rfs_A Internalin B, repeat mo 99.6 1.1E-14 3.9E-19 110.2 9.3 167 2-181 61-230 (272)
63 2z7x_B TOLL-like receptor 1, v 99.6 1.6E-14 5.5E-19 118.7 10.9 127 56-184 325-479 (520)
64 2z81_A CD282 antigen, TOLL-lik 99.6 6.9E-15 2.4E-19 121.6 8.2 153 4-159 26-182 (549)
65 1o6v_A Internalin A; bacterial 99.6 2.4E-14 8.3E-19 116.3 11.2 51 56-109 222-273 (466)
66 1o6v_A Internalin A; bacterial 99.6 3.2E-14 1.1E-18 115.6 11.6 120 56-184 266-386 (466)
67 1p9a_G Platelet glycoprotein I 99.6 7.1E-15 2.4E-19 112.4 7.3 174 2-185 8-184 (290)
68 2z63_A TOLL-like receptor 4, v 99.5 5.9E-15 2E-19 122.4 6.2 158 26-184 344-505 (570)
69 3m19_A Variable lymphocyte rec 99.5 3.5E-14 1.2E-18 106.3 8.9 152 4-160 35-190 (251)
70 4glp_A Monocyte differentiatio 99.5 4.4E-15 1.5E-19 114.6 4.0 152 26-184 142-305 (310)
71 2ft3_A Biglycan; proteoglycan, 99.5 3.2E-14 1.1E-18 110.7 8.6 174 4-184 54-252 (332)
72 2z7x_B TOLL-like receptor 1, v 99.5 1.6E-13 5.6E-18 112.7 13.0 99 2-109 43-146 (520)
73 3bz5_A Internalin-J, INLJ; leu 99.5 8.8E-14 3E-18 112.8 11.1 163 2-184 62-244 (457)
74 2ast_B S-phase kinase-associat 99.5 3.5E-16 1.2E-20 121.8 -3.6 178 4-184 70-258 (336)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.8E-13 6E-18 113.7 12.3 152 26-184 350-508 (562)
76 1ziw_A TOLL-like receptor 3; i 99.5 1.4E-13 4.8E-18 116.6 11.6 177 2-183 403-594 (680)
77 3j0a_A TOLL-like receptor 5; m 99.5 1.7E-13 5.9E-18 118.8 12.4 105 2-109 46-156 (844)
78 1ziw_A TOLL-like receptor 3; i 99.5 5.7E-14 2E-18 119.0 8.9 176 4-183 25-205 (680)
79 2o6s_A Variable lymphocyte rec 99.5 4.5E-14 1.5E-18 102.7 7.1 78 30-109 29-108 (208)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.8E-13 6E-18 113.7 11.0 39 146-184 350-388 (562)
81 2z81_A CD282 antigen, TOLL-lik 99.5 1.4E-13 4.8E-18 113.7 9.9 154 29-184 26-183 (549)
82 4ay9_X Follicle-stimulating ho 99.5 9.3E-13 3.2E-17 103.2 13.3 177 4-184 30-213 (350)
83 1h6t_A Internalin B; cell adhe 99.4 2.4E-13 8.4E-18 103.9 8.6 145 2-160 66-211 (291)
84 2ca6_A RAN GTPase-activating p 99.4 1.3E-14 4.5E-19 115.1 1.3 127 56-183 160-313 (386)
85 1m9s_A Internalin B; cell inva 99.4 3.2E-13 1.1E-17 112.9 9.5 145 2-160 63-208 (605)
86 2ca6_A RAN GTPase-activating p 99.4 6.8E-15 2.3E-19 116.8 -1.0 37 147-184 242-285 (386)
87 2ell_A Acidic leucine-rich nuc 99.4 1.4E-13 5E-18 96.6 5.0 127 29-184 24-158 (168)
88 4g8a_A TOLL-like receptor 4; l 99.4 1.9E-13 6.7E-18 114.4 6.2 129 5-136 53-184 (635)
89 2v70_A SLIT-2, SLIT homolog 2 99.4 5.3E-13 1.8E-17 98.0 7.8 126 56-183 33-163 (220)
90 4g8a_A TOLL-like receptor 4; l 99.4 4.3E-13 1.5E-17 112.3 7.2 181 2-184 369-578 (635)
91 2ell_A Acidic leucine-rich nuc 99.4 5.6E-13 1.9E-17 93.6 6.5 104 3-111 23-130 (168)
92 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5.3E-17 95.5 9.1 148 7-160 14-164 (220)
93 1xeu_A Internalin C; cellular 99.4 8.5E-13 2.9E-17 99.5 7.6 144 2-160 39-183 (263)
94 3oja_A Leucine-rich immune mol 99.4 3.2E-12 1.1E-16 104.5 11.5 175 3-185 33-226 (487)
95 2v9t_B SLIT homolog 2 protein 99.4 8.1E-13 2.8E-17 97.0 6.9 124 56-182 33-161 (220)
96 3e6j_A Variable lymphocyte rec 99.4 1.6E-12 5.4E-17 96.0 8.1 127 56-184 41-170 (229)
97 1xeu_A Internalin C; cellular 99.4 1.6E-12 5.4E-17 98.0 8.1 147 24-184 36-183 (263)
98 2v9t_B SLIT homolog 2 protein 99.4 1.9E-12 6.3E-17 95.1 8.2 129 29-160 32-163 (220)
99 2je0_A Acidic leucine-rich nuc 99.4 1.5E-13 5.1E-18 94.7 2.0 123 56-182 18-149 (149)
100 3o53_A Protein LRIM1, AGAP0063 99.4 4.6E-13 1.6E-17 103.5 4.7 176 2-185 32-226 (317)
101 2xot_A Amphoterin-induced prot 99.3 2.1E-12 7.1E-17 101.7 8.3 152 29-184 39-200 (361)
102 4ay9_X Follicle-stimulating ho 99.3 1.1E-11 3.7E-16 97.2 11.9 177 1-183 51-256 (350)
103 3cvr_A Invasion plasmid antige 99.3 8.2E-12 2.8E-16 103.6 10.6 135 28-184 99-241 (571)
104 1z7x_W Ribonuclease inhibitor; 99.3 4.2E-14 1.4E-18 114.5 -3.3 177 3-184 198-409 (461)
105 3g06_A SSPH2 (leucine-rich rep 99.3 1E-11 3.5E-16 104.1 10.9 58 122-184 238-295 (622)
106 2je0_A Acidic leucine-rich nuc 99.3 3.8E-13 1.3E-17 92.6 1.7 101 4-109 17-121 (149)
107 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-12 5.4E-17 92.1 4.5 127 56-187 20-154 (176)
108 2o6s_A Variable lymphocyte rec 99.3 9.2E-12 3.1E-16 90.4 8.6 127 56-184 29-159 (208)
109 3e6j_A Variable lymphocyte rec 99.3 4.7E-12 1.6E-16 93.5 7.1 128 29-160 40-170 (229)
110 3goz_A Leucine-rich repeat-con 99.3 5.7E-13 2E-17 104.9 1.8 35 149-184 225-264 (362)
111 1z7x_W Ribonuclease inhibitor; 99.3 2.3E-13 7.9E-18 110.1 -2.3 179 3-184 27-238 (461)
112 1dce_A Protein (RAB geranylger 99.2 4.2E-13 1.4E-17 111.4 -1.1 174 2-184 347-544 (567)
113 3ogk_B Coronatine-insensitive 99.2 2.7E-12 9.4E-17 106.9 3.1 105 2-109 291-411 (592)
114 2xot_A Amphoterin-induced prot 99.2 3.9E-11 1.3E-15 94.4 8.6 128 54-184 38-174 (361)
115 1w8a_A SLIT protein; signaling 99.2 3.9E-11 1.3E-15 86.1 7.4 105 56-160 30-137 (192)
116 3ogk_B Coronatine-insensitive 99.2 4.7E-12 1.6E-16 105.5 2.7 106 3-109 191-326 (592)
117 1jl5_A Outer protein YOPM; leu 99.2 1.8E-10 6.2E-15 93.3 11.7 33 56-89 174-207 (454)
118 3goz_A Leucine-rich repeat-con 99.2 1.1E-12 3.6E-17 103.3 -1.4 128 56-184 139-295 (362)
119 1jl5_A Outer protein YOPM; leu 99.2 1.9E-10 6.5E-15 93.2 11.5 94 56-160 154-248 (454)
120 3g06_A SSPH2 (leucine-rich rep 99.2 9.3E-11 3.2E-15 98.3 9.9 52 125-184 221-272 (622)
121 1w8a_A SLIT protein; signaling 99.1 4.5E-11 1.6E-15 85.8 5.7 125 7-136 11-137 (192)
122 2wfh_A SLIT homolog 2 protein 99.1 1.2E-10 4E-15 83.7 7.8 104 56-160 32-137 (193)
123 1a9n_A U2A', U2A'; complex (nu 99.1 2.5E-11 8.5E-16 85.8 4.1 102 56-160 43-151 (176)
124 3cvr_A Invasion plasmid antige 99.1 1.4E-10 4.7E-15 96.3 8.9 152 5-185 60-219 (571)
125 2o6r_A Variable lymphocyte rec 99.1 1.4E-10 4.8E-15 82.0 7.6 104 56-160 29-135 (177)
126 1ds9_A Outer arm dynein; leuci 99.1 3.1E-12 1.1E-16 92.3 -2.1 83 21-109 40-123 (198)
127 2p1m_B Transport inhibitor res 99.1 1.9E-11 6.5E-16 101.8 2.2 61 124-185 455-518 (594)
128 2wfh_A SLIT homolog 2 protein 99.1 3E-10 1E-14 81.6 8.0 78 29-109 31-110 (193)
129 4b8c_D Glucose-repressible alc 99.1 6.8E-11 2.3E-15 101.0 4.2 117 48-168 218-335 (727)
130 2ra8_A Uncharacterized protein 99.1 1.8E-10 6.2E-15 90.5 6.1 177 4-184 107-318 (362)
131 2p1m_B Transport inhibitor res 99.0 2.4E-11 8.3E-16 101.2 0.5 35 148-183 288-324 (594)
132 1ds9_A Outer arm dynein; leuci 99.0 5.6E-12 1.9E-16 90.9 -4.6 151 23-179 12-180 (198)
133 2o6r_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 76.4 7.6 106 28-136 27-135 (177)
134 1dce_A Protein (RAB geranylger 99.0 7.4E-10 2.5E-14 92.0 6.0 119 30-155 442-566 (567)
135 4b8c_D Glucose-repressible alc 98.9 8.2E-10 2.8E-14 94.3 4.1 112 69-184 216-327 (727)
136 2r9u_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 74.8 6.1 98 59-160 16-116 (174)
137 3g39_A Variable lymphocyte rec 98.8 5.8E-09 2E-13 73.2 5.6 54 56-109 31-86 (170)
138 3sb4_A Hypothetical leucine ri 98.8 2.8E-08 9.4E-13 77.0 9.0 99 76-179 225-327 (329)
139 2r9u_A Variable lymphocyte rec 98.8 1.3E-08 4.3E-13 71.8 5.8 54 56-109 34-89 (174)
140 3g39_A Variable lymphocyte rec 98.7 1.6E-08 5.5E-13 70.9 5.4 98 6-109 11-110 (170)
141 3sb4_A Hypothetical leucine ri 98.6 1.3E-07 4.3E-12 73.3 7.6 85 3-90 24-137 (329)
142 2ifg_A High affinity nerve gro 98.5 1.3E-07 4.6E-12 73.6 6.4 90 17-109 20-111 (347)
143 3e4g_A ATP synthase subunit S, 98.5 2.5E-07 8.7E-12 64.8 5.7 83 56-139 62-153 (176)
144 3un9_A NLR family member X1; l 98.5 6.6E-09 2.3E-13 82.0 -2.8 154 4-160 72-250 (372)
145 3un9_A NLR family member X1; l 98.5 4.4E-09 1.5E-13 83.0 -3.9 155 28-184 71-250 (372)
146 3e4g_A ATP synthase subunit S, 98.4 3.6E-07 1.2E-11 64.1 5.5 83 29-114 61-152 (176)
147 2ifg_A High affinity nerve gro 98.3 4.6E-07 1.6E-11 70.5 5.2 84 50-136 27-114 (347)
148 2ra8_A Uncharacterized protein 98.3 4.1E-07 1.4E-11 71.4 4.9 173 2-183 137-340 (362)
149 4fdw_A Leucine rich hypothetic 98.2 9.4E-06 3.2E-10 64.6 10.0 124 56-185 249-382 (401)
150 4fdw_A Leucine rich hypothetic 98.1 5.6E-05 1.9E-09 60.1 11.7 171 2-184 178-356 (401)
151 1io0_A Tropomodulin; LRR prote 97.7 6.3E-06 2.1E-10 58.4 0.3 117 19-136 26-162 (185)
152 1io0_A Tropomodulin; LRR prote 97.6 1.7E-05 5.8E-10 56.2 1.5 109 51-160 33-162 (185)
153 3rw6_A Nuclear RNA export fact 97.4 0.00012 4.1E-09 54.8 3.9 80 26-107 167-257 (267)
154 3rw6_A Nuclear RNA export fact 97.1 0.00017 5.8E-09 54.0 1.7 79 52-132 168-258 (267)
155 4h09_A Hypothetical leucine ri 95.4 0.049 1.7E-06 42.5 7.4 81 25-109 213-294 (379)
156 4gt6_A Cell surface protein; l 95.4 0.043 1.5E-06 43.1 7.0 107 23-135 259-367 (394)
157 4fs7_A Uncharacterized protein 95.2 0.021 7.2E-07 44.9 4.7 103 24-134 271-375 (394)
158 4fs7_A Uncharacterized protein 95.2 0.04 1.4E-06 43.3 6.2 56 123-182 295-352 (394)
159 4gt6_A Cell surface protein; l 94.9 0.073 2.5E-06 41.8 7.0 127 48-183 259-388 (394)
160 3rfe_A Platelet glycoprotein I 94.4 0.036 1.2E-06 36.5 3.5 33 56-88 32-66 (130)
161 1pgv_A TMD-1, tropomodulin TMD 93.3 0.054 1.9E-06 38.4 2.9 86 23-109 35-134 (197)
162 4h09_A Hypothetical leucine ri 92.9 0.14 4.7E-06 39.9 5.0 124 3-133 216-341 (379)
163 3rfe_A Platelet glycoprotein I 91.7 0.17 5.7E-06 33.2 3.5 49 59-109 12-63 (130)
164 1pgv_A TMD-1, tropomodulin TMD 89.2 0.088 3E-06 37.3 0.5 104 4-109 41-165 (197)
165 2lz0_A Uncharacterized protein 24.9 86 0.0029 19.0 3.5 30 56-85 21-51 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.4e-20 Score=146.51 Aligned_cols=125 Identities=23% Similarity=0.271 Sum_probs=56.7
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD 134 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 134 (210)
+|++|++.+ .++.+|.+++.+++|++|++++|.++..+ ..++.+++|++|+++++.....++.....+++|+.|++.+
T Consensus 184 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp TCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 444444444 44444444444455555555554443321 2344445555555543322222333333444555555554
Q ss_pred cCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeee
Q 039786 135 FIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFA 181 (210)
Q Consensus 135 ~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~ 181 (210)
|.....++...+.+++|++|++++|+.++.+|..+..+++|+.+++.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 44444443333444555555555554444455555555554444443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.6e-19 Score=140.62 Aligned_cols=177 Identities=23% Similarity=0.321 Sum_probs=130.2
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-c-CccCChhhhc----
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-N-MKKLPDWIFK---- 75 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~-~~~~p~~~~~---- 75 (210)
++++|++|++++ .....++..++++++|++|++++|... .. ...+..++ +|++|++.+ . ...+|..+..
T Consensus 102 ~l~~L~~L~L~~--n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~l-p~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 102 RLSHLQHMTIDA--AGLMELPDTMQQFAGLETLTLARNPLR-AL-PASIASLN-RLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp GGTTCSEEEEES--SCCCCCCSCGGGGTTCSEEEEESCCCC-CC-CGGGGGCT-TCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hCCCCCEEECCC--CCccchhHHHhccCCCCEEECCCCccc-cC-cHHHhcCc-CCCEEECCCCCCccccChhHhhccch
Confidence 467788888875 222255667778888888888876544 22 23455666 788888876 3 3446665543
Q ss_pred -----CCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCc
Q 039786 76 -----LKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPD 150 (210)
Q Consensus 76 -----l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 150 (210)
+++|++|++++|.++.. +..++.+++|++|+++++... .++.....+++|+.|++.+|.....++...+.+++
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp CCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred hhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 88888888888887643 456788899999999844322 23334566789999999988877777766778999
Q ss_pred ccEEEeccCCCCCcccccccccccccceeeecchH
Q 039786 151 IRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 151 L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~ 185 (210)
|++|++.+|...+.+|..+..+++|++|++.+|+.
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 99999999988888999999999999999999753
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.4e-18 Score=131.27 Aligned_cols=179 Identities=19% Similarity=0.157 Sum_probs=120.6
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~L 79 (210)
++++|++|++++ .......+..++.+++|++|++++|..........+..++ +|++|++.+ .++.+ |..+..+++|
T Consensus 54 ~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 54 ACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCC
Confidence 467777777774 2222222556777788888888776534444344556666 788888877 66664 4567778888
Q ss_pred cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEecccCcceeeEEccCCCCcccEEEecc
Q 039786 80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGP 158 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 158 (210)
++|++++|.++..+...++.+++|++|+++++... .+.. ....+++|+.|++.++......+.....+++|+.|++.+
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 88888888877766666778888888888744222 2222 245577888888887653322233445678899999998
Q ss_pred CCCCCcccc-cccccccccceeeecch
Q 039786 159 CPLLMEIPI-GIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 159 ~~~l~~lp~-~l~~l~~L~~l~l~~~~ 184 (210)
|. ++.+|. .+..+++|++|++.+++
T Consensus 211 n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 211 NN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred Cc-CCcCCHHHcccCcccCEEeccCCC
Confidence 87 555554 46788999999998854
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=3.7e-18 Score=132.03 Aligned_cols=180 Identities=18% Similarity=0.090 Sum_probs=119.8
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCc-cCChhhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~p~~~~~l~~L 79 (210)
++++|++|++++.......++..++++++|++|++++|......+ ..+..++ +|++|++.+ .++ .+|..+..+++|
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCC
Confidence 578899999983123344567778899999999998876543322 3456666 888888887 666 477788888888
Q ss_pred cEEEEEeecCCCcchhhhhcCC-CccEEEecCccCCcce-----------------------EecCCCCCcccEEEeccc
Q 039786 80 IRLGLELSGLAEEPIRVLQASP-NLLEILLTGTYDYELF-----------------------HFEAGWFPKLQKLLLWDF 135 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~~ 135 (210)
++|++++|.++...+..++.++ +|++|+++++.....+ +.....+++|+.|++.++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 8888888887655566777776 7888887633211111 111234556666666654
Q ss_pred CcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 136 IAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 136 ~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
.. .........+++|++|++.+|.....+|..+..+++|++|++.++.
T Consensus 232 ~l-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 232 SL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EE-CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred ce-eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 32 1111223456788888888887444678788888888888888764
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=8.7e-18 Score=129.97 Aligned_cols=130 Identities=19% Similarity=0.237 Sum_probs=99.4
Q ss_pred CCCcEEEEEecCCCcc--hHHHHhhcCCCCceEEEEe-cCcccccccccccCCccCceEEEeec-cCc-cCChhhhcCCC
Q 039786 4 RQLRKLSIRPQNGNGK--DLCGLIANLKNLESLTVEM-TSKEEILDLLSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKN 78 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~p~~~~~l~~ 78 (210)
.+++.|++++ ..... .++..++++++|++|++++ +...... ...+..++ +|++|++.+ .++ .+|..+..+++
T Consensus 50 ~~l~~L~L~~-~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSG-LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEEC-CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCC-CCccCCcccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCC
Confidence 5789999996 33333 6788999999999999995 4443333 34567777 999999998 777 58989999999
Q ss_pred ccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCC-cccEEEecccC
Q 039786 79 LIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFP-KLQKLLLWDFI 136 (210)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 136 (210)
|++|++++|.++...+..++.+++|++|+++++.....++.....++ +|+.|++.++.
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 99999999998766677889999999999984433223333444555 78888887654
No 6
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=7.3e-17 Score=123.49 Aligned_cols=174 Identities=20% Similarity=0.151 Sum_probs=132.6
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRL 82 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L 82 (210)
++++.|++++ +......+..++.+++|++|++++|...... ....++ +|++|++++ .++.+|..+..+++|++|
T Consensus 31 ~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 31 KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---VDGTLP-VLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCEEE---CCSCCT-TCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccCccc---CCCCCC-cCCEEECCCCcCCcCchhhccCCCCCEE
Confidence 4677777774 3333333567888999999999886543322 224556 899999998 888899888999999999
Q ss_pred EEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEcc-CCCCcccEEEeccCCC
Q 039786 83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEK-GAVPDIRELRIGPCPL 161 (210)
Q Consensus 83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~~~~ 161 (210)
++++|.++..+...++.+++|++|+++++............+++|+.|++.++. +..++... ..+++|++|++.+|.
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~- 183 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS- 183 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-
Confidence 999999988777889999999999998443222111123467899999998765 45555432 468999999999998
Q ss_pred CCcccccccccccccceeeecch
Q 039786 162 LMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 162 l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
++.+|.++....+|+.+++.+++
T Consensus 184 l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 184 LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCccChhhcccccCCeEEeCCCC
Confidence 78899999888999999999754
No 7
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.5e-17 Score=128.06 Aligned_cols=178 Identities=16% Similarity=0.127 Sum_probs=87.8
Q ss_pred CCCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh--hhhcCC
Q 039786 2 KLRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD--WIFKLK 77 (210)
Q Consensus 2 ~L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~--~~~~l~ 77 (210)
++++|++|++++ ........+..+..+++|++|++++|..... + ..+..++ +|++|++.+ .++.++. .+..++
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-S-SNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-E-EEEETCT-TCCEEECTTSEEESSTTTTTTTTCT
T ss_pred ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-h-hhcCCCC-CCCEEECCCCcccccccchhhhhcc
Confidence 567888888875 1111122234555677777777777543321 1 1233344 566666555 4444332 344555
Q ss_pred CccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCc-ceEecC------------------------CCCCcccEEEe
Q 039786 78 NLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYE-LFHFEA------------------------GWFPKLQKLLL 132 (210)
Q Consensus 78 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~------------------------~~~~~L~~L~l 132 (210)
+|++|++++|.+.......++.+++|++|+++++.... ..+... ..+++|+.|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 55555555555444333444455555555554221111 111122 33445555555
Q ss_pred cccCcceeeE-EccCCCCcccEEEeccCCCCCccccccccc-ccccceeeecc
Q 039786 133 WDFIAVKSVI-IEKGAVPDIRELRIGPCPLLMEIPIGIEHL-KNLKLLKFAGM 183 (210)
Q Consensus 133 ~~~~~l~~~~-~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l-~~L~~l~l~~~ 183 (210)
.++.. ..++ .....+++|++|++++|......|..+..+ ++|++|++.++
T Consensus 207 ~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 207 SHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TTSCC-SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CCCcc-CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 54432 1111 123345666666666666334445555555 37777777664
No 8
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=4e-16 Score=116.01 Aligned_cols=176 Identities=15% Similarity=0.051 Sum_probs=111.5
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCC-hhhhcCCCcc
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLP-DWIFKLKNLI 80 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p-~~~~~l~~L~ 80 (210)
++|++|++++ ..........++++++|++|++++|......+...+..++ +|++|++.+ .++.+| ..+..+++|+
T Consensus 31 ~~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 3688888885 2222222346778888888888886534444444566666 788888874 566655 3567788888
Q ss_pred EEEEEeecCCCcchhhhhcCCCcc---EEEecCccCCcceEe-cCCCCCccc-EEEecccCcceeeEEccCCCCcccEEE
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLL---EILLTGTYDYELFHF-EAGWFPKLQ-KLLLWDFIAVKSVIIEKGAVPDIRELR 155 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~-~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~L~~L~ 155 (210)
+|++++|.++..+ .++.+++|+ +|+++++.....++. ....+++|+ .|++.++. +..++......++|+.|+
T Consensus 109 ~L~l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 109 FLGIFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEE
T ss_pred EEeCCCCCCcccc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEE
Confidence 8888888876633 366677776 888874412222222 234567777 88877654 334443332336788888
Q ss_pred eccCCCCCcccc-ccccc-ccccceeeecch
Q 039786 156 IGPCPLLMEIPI-GIEHL-KNLKLLKFAGMV 184 (210)
Q Consensus 156 i~~~~~l~~lp~-~l~~l-~~L~~l~l~~~~ 184 (210)
+.+|..++.+|. .+..+ ++|++|++.++.
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 888854666644 35667 788888887754
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=1.2e-16 Score=121.79 Aligned_cols=178 Identities=16% Similarity=0.113 Sum_probs=134.7
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-c-CccC-ChhhhcCCCc
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-N-MKKL-PDWIFKLKNL 79 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~-~~~~-p~~~~~l~~L 79 (210)
.++|++|++++ .......+..++.+++|++|+++++.. .......+..++ +|++|++.+ . ++.+ |..+..+++|
T Consensus 31 ~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCcc-ceeCHhhcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 46899999985 233333345688999999999998644 333345567777 899999998 4 7776 6678899999
Q ss_pred cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEecc
Q 039786 80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGP 158 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~ 158 (210)
++|++++|.++..+...++.+++|++|+++++............+++|+.|++.++. +..++.. ...+++|+.|++.+
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence 999999999888777788999999999998443222222224567899999999874 4444432 45689999999999
Q ss_pred CCCCCcccccccccccccceeeecch
Q 039786 159 CPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 159 ~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
|......|..+..+++|++|++.++.
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcccccCHhHccCcccccEeeCCCCc
Confidence 98444447788899999999999874
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=2.9e-16 Score=124.80 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCcc
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLI 80 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~ 80 (210)
+++|++|++++ .......+..++.+++|++|++++|... ..+...+..++ +|++|++.+ .++.+|.. ++.+++|+
T Consensus 68 l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 68 FRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp CCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 44555555553 1111111234455555555555543321 11112233333 444444444 44444432 23444444
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 109 (210)
+|++++|.+...+...++.+++|++|+++
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECC
Confidence 44444444433333334444444444443
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.8e-16 Score=120.04 Aligned_cols=176 Identities=21% Similarity=0.228 Sum_probs=129.9
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIR 81 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~ 81 (210)
++|++|++++ .......+..++++++|++|+++++... ..+...+..++ +|++|++.+ .++.+|. .+..+++|++
T Consensus 37 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK-NLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCT-TCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCC-CCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 4689999986 2222222346888999999999986543 33334456676 899999998 7777664 5678999999
Q ss_pred EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccCC
Q 039786 82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCP 160 (210)
Q Consensus 82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~ 160 (210)
|++++|.++..+...++.+++|++|+++.+............+++|+.|++.++. +..++.. ...+++|++|++.+|.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCc
Confidence 9999999888777788999999999998443222111124567899999998765 3444332 4568999999999997
Q ss_pred CCCccccc-ccccccccceeeecch
Q 039786 161 LLMEIPIG-IEHLKNLKLLKFAGMV 184 (210)
Q Consensus 161 ~l~~lp~~-l~~l~~L~~l~l~~~~ 184 (210)
++.+|.. +..+++|+.|++.+++
T Consensus 193 -l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 193 -LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CCcCCHHHhccccCCCEEEecCCC
Confidence 6666664 6789999999998864
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=6.7e-17 Score=124.41 Aligned_cols=177 Identities=16% Similarity=0.134 Sum_probs=126.5
Q ss_pred CCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccc-cccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 4 RQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILD-LLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
++|++|++++ .....++ ..++++++|++|++++|....... ...+..++ +|++|++.+ .++.+|..+..+++|+
T Consensus 28 ~~l~~L~L~~--n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELES--NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCEEECCC--CccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCCccccChhhcCCCCCCC
Confidence 5899999986 2223344 347899999999999875432210 12234455 899999998 7778888888999999
Q ss_pred EEEEEeecCCCcch-hhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcce-eeEEccCCCCcccEEEecc
Q 039786 81 RLGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVK-SVIIEKGAVPDIRELRIGP 158 (210)
Q Consensus 81 ~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~i~~ 158 (210)
+|++++|.++..+. ..+..+++|++|+++++............+++|+.|++.++.... ..+.....+++|++|++++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 99999998777554 578899999999998543222222234567899999998775332 2344455678888888888
Q ss_pred CCCCCcc-cccccccccccceeeecch
Q 039786 159 CPLLMEI-PIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 159 ~~~l~~l-p~~l~~l~~L~~l~l~~~~ 184 (210)
|. ++.+ |..+..+++|++|++.++.
T Consensus 185 n~-l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 185 CQ-LEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred CC-cCCcCHHHhcCCCCCCEEECCCCc
Confidence 87 4443 5666777888888887764
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=3e-16 Score=131.31 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=45.5
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCcc
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLI 80 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~ 80 (210)
+++|++|++++ .......+..++.+++|++|++++|.... .+...+..++ +|++|++.+ .++.+|.. ++.+++|+
T Consensus 74 l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 74 FRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEECCC-CCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 45555555553 11122222345555555555555543222 2222233343 455555544 44444432 24445555
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 109 (210)
+|++++|.++..+...++.+++|++|+++
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 55555544444333344444444444444
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=1.4e-16 Score=136.90 Aligned_cols=104 Identities=23% Similarity=0.306 Sum_probs=63.2
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCc-cCChhhhcCCCcc
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNLI 80 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~p~~~~~l~~L~ 80 (210)
+++|++|++++ +.....++..++.+++|+.|++++|...+..+ ..+..++ +|++|++.+ .++ .+|.+++.+++|+
T Consensus 441 l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 441 LSKLRDLKLWL-NMLEGEIPQELMYVKTLETLILDFNDLTGEIP-SGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp CTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCCCEEECCC-CcccCcCCHHHcCCCCceEEEecCCcccCcCC-HHHhcCC-CCCEEEccCCccCCcCChHHhcCCCCC
Confidence 44555555553 22233344555556666666666544332221 2344455 677777776 555 4777777777788
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 109 (210)
+|++++|.++...+..++.+++|++|+++
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 88887777766556677777777777776
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=3.1e-17 Score=137.25 Aligned_cols=177 Identities=12% Similarity=0.032 Sum_probs=89.3
Q ss_pred CCCCCcEEEEEecCCCcch---HHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc---------
Q 039786 2 KLRQLRKLSIRPQNGNGKD---LCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK--------- 68 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--------- 68 (210)
++++|++|++++ ..... .+..++.+++|++|++++|..... + ..+..++ +|++|++.+ .+..
T Consensus 348 ~l~~L~~L~ls~--n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSR--NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-S-ANFMGLE-ELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCTTCCEEECCS--SCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-C-CCCTTCT-TCCEEECTTSEEESTTTTTTTTT
T ss_pred cCCCCCEEECcC--CccCCCcchhhhhccCCcccEeECCCCccccc-h-hhccCCC-CCCeeECCCCccCCccChhhhhc
Confidence 567777777774 22122 245566777777777766543221 1 2333343 455555544 3333
Q ss_pred -----------------CChhhhcCCCccEEEEEeecCCCc-chhhhhcCCCccEEEecCccCCcceEecCCCCCcccEE
Q 039786 69 -----------------LPDWIFKLKNLIRLGLELSGLAEE-PIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKL 130 (210)
Q Consensus 69 -----------------~p~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 130 (210)
.|..++.+++|++|++++|.+... .+..++.+++|+.|+++++......+.....+++|+.|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 333344444555555544444331 23334455555555554332111111123345566666
Q ss_pred EecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccc-cccceeeecch
Q 039786 131 LLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLK-NLKLLKFAGMV 184 (210)
Q Consensus 131 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~-~L~~l~l~~~~ 184 (210)
++.++.-....+.....+++|+.|++++|. ++.+|..+..++ +|+++++.+++
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 666554322223334456667777777666 556666666665 47777776643
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=3.1e-16 Score=118.90 Aligned_cols=174 Identities=21% Similarity=0.184 Sum_probs=130.3
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L 79 (210)
++++|+.|++++ ..... .+.++.+++|++|++++|.... +..+..++ +|++|++.+ .++.++. .++.+++|
T Consensus 39 ~l~~L~~L~l~~--~~i~~-~~~l~~l~~L~~L~l~~n~l~~---~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANN--SDIKS-VQGIQYLPNVRYLALGGNKLHD---ISALKELT-NLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTT--SCCCC-CTTGGGCTTCCEEECTTSCCCC---CGGGTTCT-TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccceeeeeeCC--CCccc-ccccccCCCCcEEECCCCCCCC---chhhcCCC-CCCEEECCCCccCccChhHhcCCcCC
Confidence 357899999986 22222 3457889999999999876543 23566677 899999998 7887654 46889999
Q ss_pred cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEecc
Q 039786 80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGP 158 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~ 158 (210)
++|++++|.++..+...++.+++|++|+++++............+++|+.|++.++. +..++.. .+.+++|++|++.+
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCC
Confidence 999999999888777778999999999998553222122223567899999999875 4444433 35689999999999
Q ss_pred CCCCCcccc-cccccccccceeeecch
Q 039786 159 CPLLMEIPI-GIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 159 ~~~l~~lp~-~l~~l~~L~~l~l~~~~ 184 (210)
|. ++.+|. .+..+++|++|++.+++
T Consensus 191 N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 191 NQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 98 555554 46889999999998854
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=127.53 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=83.1
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L 79 (210)
++++|++|++++ +......+.+++++++|++|++++|... ..+...+..++ +|++|++.+ .+.. .|..+..+++|
T Consensus 54 ~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 54 SFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCEEECCC-CccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCC-CCCEEECCCCccccCChhHccccccC
Confidence 355566666653 2222222444555566666666554321 12212233333 455554444 3332 22233344444
Q ss_pred cEEEEEe------------------------ecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEeccc
Q 039786 80 IRLGLEL------------------------SGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDF 135 (210)
Q Consensus 80 ~~L~l~~------------------------~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 135 (210)
++|++++ |.++..+...+..+++|+.|+++++............+++|+.|++.++
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 4444444 4433333333444444444444422111111112234455666666555
Q ss_pred CcceeeEEccCCCCcccEEEeccCCCCCcccc-cccccccccceeeecch
Q 039786 136 IAVKSVIIEKGAVPDIRELRIGPCPLLMEIPI-GIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 136 ~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~-~l~~l~~L~~l~l~~~~ 184 (210)
.....++.......+|+.|++.+|. ++.+|. .+..+++|++|++.++.
T Consensus 211 ~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 211 PYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp TTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc
Confidence 5444444333334467777777665 555553 45677788888887764
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.66 E-value=1.2e-16 Score=137.24 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=64.8
Q ss_pred CceEEEeec-cCc-cCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-------------
Q 039786 56 YLQRLYLTG-NMK-KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE------------- 120 (210)
Q Consensus 56 ~L~~L~l~~-~~~-~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------- 120 (210)
+|++|++.+ .++ .+|.+++.+++|++|++++|.++...+..++.+++|++|+++++.....++..
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 566666655 444 35555666666666666666554444445555555555555533222222222
Q ss_pred -----------CCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786 121 -----------AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 121 -----------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~ 183 (210)
...+++|+.|++.++.....++...+.+++|+.|++.+|.....+|..+..+++|++|++.++
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 233445555555544433233333344555555555555533345555555666666666554
No 19
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3.4e-16 Score=113.13 Aligned_cols=152 Identities=17% Similarity=0.174 Sum_probs=101.1
Q ss_pred hcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCcc
Q 039786 26 ANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLL 104 (210)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 104 (210)
+.+++|++|+++++... . +..+..++ +|++|++.+ .++.++ .+..+++|++|++++|.++...+..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~--l~~l~~l~-~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-D--LTGIEYAH-NIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-C--CTTGGGCT-TCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-C--hHHHhcCC-CCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 45567778888775443 2 12355555 788888877 444444 667778888888888777665566677788888
Q ss_pred EEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 105 EILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 105 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
+|+++.+............+++|+.|++.+|..+..++ ....+++|++|++.+|. ++.++ .+..+++|++|++.+++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence 88887443222222334567788888887776444443 45568888999998887 66666 67888899999988875
Q ss_pred H
Q 039786 185 K 185 (210)
Q Consensus 185 ~ 185 (210)
.
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=2.8e-16 Score=119.25 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=62.9
Q ss_pred CceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcc-hhhhhcCCCccEEEecCccCCcceEecCCCCCccc----
Q 039786 56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEP-IRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQ---- 128 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~---- 128 (210)
+|++|++.+ .+..++. .++.+++|++|++++|.++... +..++.+++|+.|+++++............+++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 444444444 3333322 3444455555555555444322 33444555555555542211110000111122222
Q ss_pred EEEecccCcceeeEEccCCCCcccEEEeccCCCCCccccc-ccccccccceeeecc
Q 039786 129 KLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGM 183 (210)
Q Consensus 129 ~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~ 183 (210)
.+++.++. +..++.......+|+.|++.+|. ++.+|.. +..+++|++|++.++
T Consensus 181 ~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 181 SLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp EEECCSSC-CCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred eeecCCCc-ccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 44444432 22232222334589999999988 6777765 478999999999964
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=5e-16 Score=119.82 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=91.1
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccE
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIR 81 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~ 81 (210)
+++|++|++++ .....++. ++.+++|++|++++|.... +..+..++ +|++|++.+ .++.++. +..+++|++
T Consensus 62 l~~L~~L~L~~--n~i~~~~~-~~~l~~L~~L~L~~n~l~~---~~~~~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 62 LNNLIGLELKD--NQITDLAP-LKNLTKITELELSGNPLKN---VSAIAGLQ-SIKTLDLTSTQITDVTP-LAGLSNLQV 133 (308)
T ss_dssp CTTCCEEECCS--SCCCCCGG-GTTCCSCCEEECCSCCCSC---CGGGTTCT-TCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred cCCCCEEEccC--CcCCCChh-HccCCCCCEEEccCCcCCC---chhhcCCC-CCCEEECCCCCCCCchh-hcCCCCCCE
Confidence 45556666654 11122222 5555666666666543322 12344444 666666665 5555543 566666666
Q ss_pred EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCC
Q 039786 82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPL 161 (210)
Q Consensus 82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~ 161 (210)
|++++|.++..+ .++.+++|++|+++++.... +. ....+++|+.|++.++. +..++. ...+++|++|++++|.
T Consensus 134 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~- 206 (308)
T 1h6u_A 134 LYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQ- 206 (308)
T ss_dssp EECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSC-
T ss_pred EECCCCccCcCc--cccCCCCccEEEccCCcCCC-Ch-hhcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCCc-
Confidence 666666655432 25666667777666332111 11 14456677777776653 222221 3456777777777776
Q ss_pred CCcccccccccccccceeeecch
Q 039786 162 LMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 162 l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
++.++ .+..+++|++|++.+++
T Consensus 207 l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 207 ISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCBCG-GGTTCTTCCEEEEEEEE
T ss_pred cCccc-cccCCCCCCEEEccCCe
Confidence 45555 36677777777777754
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=3.7e-15 Score=121.32 Aligned_cols=178 Identities=14% Similarity=0.043 Sum_probs=114.8
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCChhhhcCCCcc
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p~~~~~l~~L~ 80 (210)
+++|++|++++ ..........++++++|+.|++.++.... .....+..++ +|++|++.+ ....+|.......+|+
T Consensus 151 l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 151 LNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp CTTCCEEEEES-CCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred CCCCCEEECCC-CcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCc-ccceeeCCCCccccccCcccccCcccc
Confidence 44555555543 11111122345555566666665543322 2223445555 777777776 3344565555566889
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
.|++++|.++..+...+..+++|+.|+++++............+++|+.|++.++......+.....+++|+.|++.+|.
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 99999998887777788999999999998443222122234567899999999875333223344578999999999997
Q ss_pred CCCccccc-ccccccccceeeecch
Q 039786 161 LLMEIPIG-IEHLKNLKLLKFAGMV 184 (210)
Q Consensus 161 ~l~~lp~~-l~~l~~L~~l~l~~~~ 184 (210)
++.+|.. +..+++|++|++.+++
T Consensus 308 -l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 308 -LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -CceeCHhHcCCCcccCEEEccCCC
Confidence 6666654 5789999999998865
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=3.1e-16 Score=131.21 Aligned_cols=178 Identities=16% Similarity=0.044 Sum_probs=106.5
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccc-cccccCCccCceEEEeec-cCccCChhhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILD-LLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L 79 (210)
++++|++|++++ ......+ .++.+++|++|++++|....... ...+..++ +|++|++.+ .++.+|..+..+++|
T Consensus 326 ~l~~L~~L~l~~-n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~l~~L 401 (606)
T 3vq2_A 326 DLPFLKSLTLTM-NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAIIMSANFMGLEEL 401 (606)
T ss_dssp CCSSCCEEEEES-CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS-CCCEEECCSCSEEEECCCCTTCTTC
T ss_pred CCCccceeeccC-CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCC-cccEeECCCCccccchhhccCCCCC
Confidence 478999999996 2222322 56789999999999875543311 23345666 899999998 777788778888899
Q ss_pred cEEEEEeecCCCcch-hhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCccee-eEEccCCCCcccEEEec
Q 039786 80 IRLGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKS-VIIEKGAVPDIRELRIG 157 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~i~ 157 (210)
+.|++++|.+..... ..++.+++|++|+++++......+.....+++|+.|++.++..... .+...+.+++|+.|+++
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence 999998888666543 5667778888888774432222222233445555555555432221 22223344555555555
Q ss_pred cCCCCCcccccccccccccceeeecc
Q 039786 158 PCPLLMEIPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 158 ~~~~l~~lp~~l~~l~~L~~l~l~~~ 183 (210)
+|......|..+..+++|++|+++++
T Consensus 482 ~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 482 KCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcCCccChhhhcccccCCEEECCCC
Confidence 54422222333444444444444443
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=8.9e-16 Score=124.31 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=21.4
Q ss_pred CCCcccEEEeccCCCCCccccc-ccccccccceeeecch
Q 039786 147 AVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGMV 184 (210)
Q Consensus 147 ~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~~ 184 (210)
.+++|+.|++.+|. ++.+|.. +..+++|++|++.+++
T Consensus 264 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 45566666666665 4444433 3556667777776643
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=1.3e-15 Score=122.94 Aligned_cols=177 Identities=18% Similarity=0.136 Sum_probs=77.9
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L 79 (210)
++++|++|++++ +......+..++++++|++|++++|... ..+...+..++ +|++|++.+ .++.+|. .+..+++|
T Consensus 86 ~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 86 HLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp SCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCS-SCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CCCCCCEEECCC-CcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccc-cCceeeCCCCcccccCHHHhhhCccc
Confidence 345555555553 1122222344555555666666554322 22222334444 555555555 4444332 34444555
Q ss_pred cEEEEEeec-CCCcchhhhhcCCCccEEEecCccCCcceE-----------------------ecCCCCCcccEEEeccc
Q 039786 80 IRLGLELSG-LAEEPIRVLQASPNLLEILLTGTYDYELFH-----------------------FEAGWFPKLQKLLLWDF 135 (210)
Q Consensus 80 ~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----------------------~~~~~~~~L~~L~l~~~ 135 (210)
++|++.+|. +...+...+.++++|++|+++++... .++ .....+++|+.|++.++
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 555554433 33233333444555555554422111 111 11122333444444333
Q ss_pred CcceeeE-EccCCCCcccEEEeccCCCCCccccc-ccccccccceeeecch
Q 039786 136 IAVKSVI-IEKGAVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGMV 184 (210)
Q Consensus 136 ~~l~~~~-~~~~~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~~ 184 (210)
. +..+. .....+++|+.|++.+|. ++.+|.. +..+++|+.|++.+++
T Consensus 242 ~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 Q-IQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp C-CCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred c-eeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 2 11111 112345666666666665 4444433 3566777777776644
No 26
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=3e-16 Score=121.09 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=128.6
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
++++|++|++++ .....+ +.++.+++|+.|++++|...... .+..++ +|++|++.+ .++.++ .+..+++|+
T Consensus 39 ~l~~L~~L~l~~--~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~---~~~~l~-~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFG--TGVTTI-EGVQYLNNLIGLELKDNQITDLA---PLKNLT-KITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTT--SCCCCC-TTGGGCTTCCEEECCSSCCCCCG---GGTTCC-SCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HcCCcCEEEeeC--CCccCc-hhhhccCCCCEEEccCCcCCCCh---hHccCC-CCCEEEccCCcCCCch-hhcCCCCCC
Confidence 367899999986 222233 35788999999999987554332 266677 899999998 777776 688899999
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
+|++++|.++.. ..++.+++|++|+++++.... +. ....+++|+.|++.++. +..++. ...+++|+.|++.+|.
T Consensus 111 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN-IS-PLAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-Cc-cccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCc
Confidence 999999998774 358899999999998443222 11 25567899999999875 343332 5678999999999998
Q ss_pred CCCcccccccccccccceeeecchH
Q 039786 161 LLMEIPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 161 ~l~~lp~~l~~l~~L~~l~l~~~~~ 185 (210)
++.++. +..+++|++|+++++..
T Consensus 185 -l~~~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 185 -ISDISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp -CCCCGG-GGGCTTCCEEECTTSCC
T ss_pred -cCcChh-hcCCCCCCEEEccCCcc
Confidence 666664 78899999999999753
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.65 E-value=6.7e-16 Score=122.70 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=50.1
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~L 79 (210)
++++|++|++++ .......+..++++++|++|++++|... ..+...+..++ +|++|++.+ .++.+ |..+..+++|
T Consensus 91 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 91 YAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred CCCCcCEEECCC-CCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCC
Confidence 456777777764 2222222344666777777777765432 22222234455 677777766 55554 3346666777
Q ss_pred cEEEEEeecCCCc
Q 039786 80 IRLGLELSGLAEE 92 (210)
Q Consensus 80 ~~L~l~~~~l~~~ 92 (210)
++|++++|.++..
T Consensus 168 ~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 168 QNLQLSSNRLTHV 180 (390)
T ss_dssp CEEECCSSCCSBC
T ss_pred CEEECCCCcCCcc
Confidence 7777777665543
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=1.1e-15 Score=123.59 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=63.5
Q ss_pred hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCc
Q 039786 71 DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPD 150 (210)
Q Consensus 71 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 150 (210)
.+++.+++|++|++++|.++..+...++.+++|++|+++++............+++|+.|++.++......+.....+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 34455556666666666555544455556666666666533222211223345667777777665432211223445677
Q ss_pred ccEEEeccCCCCCccccc-ccccccccceeeecc
Q 039786 151 IRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGM 183 (210)
Q Consensus 151 L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~ 183 (210)
|++|++.+|. ++.+|.. +..+++|++|++.++
T Consensus 373 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 373 LKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccEEECCCCc-cccCCHhHhccCCcccEEEccCC
Confidence 7777777776 5555554 367777888887764
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=123.91 Aligned_cols=179 Identities=18% Similarity=0.110 Sum_probs=93.6
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh--hhhcCCC
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD--WIFKLKN 78 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~--~~~~l~~ 78 (210)
++++|++|++++ +......+..++++++|++|++++|.... .+...+..++ +|++|++.+ .++.+|. .+..+++
T Consensus 74 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 74 RCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred cCCCCCEEECCC-CccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCC
Confidence 456666666653 22222223445666666666666543322 2212234444 566666655 4555543 4455555
Q ss_pred ccEEEEEeec-CCCcchhhhhcCCCccEEEecCccCCcceEecCCC------------------------CCcccEEEec
Q 039786 79 LIRLGLELSG-LAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGW------------------------FPKLQKLLLW 133 (210)
Q Consensus 79 L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------~~~L~~L~l~ 133 (210)
|++|++++|. +...+...++++++|+.|+++.+......+..... +++|+.|++.
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 6666665553 44433444555555555555522111111111122 3455555554
Q ss_pred ccCccee-------------------------------eEEccCCCCcccEEEeccCCCCCcccccc-cccccccceeee
Q 039786 134 DFIAVKS-------------------------------VIIEKGAVPDIRELRIGPCPLLMEIPIGI-EHLKNLKLLKFA 181 (210)
Q Consensus 134 ~~~~l~~-------------------------------~~~~~~~~~~L~~L~i~~~~~l~~lp~~l-~~l~~L~~l~l~ 181 (210)
++..... ++...+.+++|+.|++++|. ++.+|.++ ..+++|++|++.
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEee
Confidence 4321100 00012346789999999887 67888875 789999999999
Q ss_pred cch
Q 039786 182 GMV 184 (210)
Q Consensus 182 ~~~ 184 (210)
+++
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 30
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=5.6e-16 Score=119.72 Aligned_cols=177 Identities=18% Similarity=0.067 Sum_probs=105.3
Q ss_pred CCCCCcEEEEEecCCCcchHHHHh--hcCCCCceEEEEecCcccccccccccCC-----ccCceEEEeec-cCccCC-hh
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLI--ANLKNLESLTVEMTSKEEILDLLSLSSP-----PQYLQRLYLTG-NMKKLP-DW 72 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~-~~~~~p-~~ 72 (210)
++++|++|++++ ......++..+ +.+++|++|++++|..... + ..+..+ + +|++|++.+ .++.++ ..
T Consensus 93 ~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLEN-LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-D-AWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEE-EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCT-TCCEEEEESCSCCCCCTTT
T ss_pred CcCCccEEEccC-CcccchhHHHHHHhcCCCccEEEccCCCCcch-h-HHHHHHHHhhcC-CCcEEEeeCCCCccchHHH
Confidence 477888888886 22223334443 7788888888888654333 1 222222 4 788888877 666654 56
Q ss_pred hhcCCCccEEEEEeecCCCc--chhhh--hcCCCccEEEecCccCCc--ceE-ecCCCCCcccEEEecccCcceeeEE-c
Q 039786 73 IFKLKNLIRLGLELSGLAEE--PIRVL--QASPNLLEILLTGTYDYE--LFH-FEAGWFPKLQKLLLWDFIAVKSVII-E 144 (210)
Q Consensus 73 ~~~l~~L~~L~l~~~~l~~~--~~~~l--~~l~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~ 144 (210)
++.+++|++|++++|.+... .+..+ +.+++|++|+++++.-.. .+. .....+++|+.|++.++.-....+. .
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 77788888888888875442 12233 677888888887332221 111 0112456777777776543222211 1
Q ss_pred cCCCCcccEEEeccCCCCCcccccccccccccceeeecchH
Q 039786 145 KGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 145 ~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~ 185 (210)
...+++|++|++++|. ++.+|..+. ++|++|+++++..
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCC
T ss_pred hhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCC
Confidence 2235677777777776 556666655 6777777777643
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=2.4e-16 Score=132.75 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=73.9
Q ss_pred HHHHhhcCCCCceEEEEecCcccc-----------------ccccccc--CCccCceEEEeec-cCc-cCChhhhcCCCc
Q 039786 21 LCGLIANLKNLESLTVEMTSKEEI-----------------LDLLSLS--SPPQYLQRLYLTG-NMK-KLPDWIFKLKNL 79 (210)
Q Consensus 21 ~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~~L~~L~l~~-~~~-~~p~~~~~l~~L 79 (210)
++++++++++|++|++++|...+. . ...+. .++ +|++|++.+ .+. .+|..++.+++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK-TEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC-chhhhhcccC-CCCEEEecCCcCCccChHHHhcCCCC
Confidence 445566666666666666544331 1 12233 444 566666655 333 356556666666
Q ss_pred cEEEEEeec-CCC-cchhhhhcC------CCccEEEecCccCCcceEe--cCCCCCcccEEEecccCcceeeEEccCCCC
Q 039786 80 IRLGLELSG-LAE-EPIRVLQAS------PNLLEILLTGTYDYELFHF--EAGWFPKLQKLLLWDFIAVKSVIIEKGAVP 149 (210)
Q Consensus 80 ~~L~l~~~~-l~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 149 (210)
++|++++|. ++. ..+..++.+ ++|++|+++++... .++. ....+++|+.|++.++.....++ ..+.++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 666666665 544 233334443 55666665533222 2332 33445555555555443222333 223334
Q ss_pred cccEEEeccCCCCCccccccccccc-ccceeeec
Q 039786 150 DIRELRIGPCPLLMEIPIGIEHLKN-LKLLKFAG 182 (210)
Q Consensus 150 ~L~~L~i~~~~~l~~lp~~l~~l~~-L~~l~l~~ 182 (210)
+|++|++.+|. ++.+|..+..+++ |++|++.+
T Consensus 354 ~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 354 KLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EESEEECCSSE-EEECCTTSEEECTTCCEEECCS
T ss_pred CCCEEECCCCc-cccccHhhhhhcccCcEEEccC
Confidence 44444444443 2344444444444 44444444
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=1.7e-15 Score=122.66 Aligned_cols=174 Identities=18% Similarity=0.126 Sum_probs=95.0
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIR 81 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~ 81 (210)
++|++|++++ +......+..++++++|+.|++++|.. .......+..++ +|++|++.+ .++.+|. .+..+++|++
T Consensus 75 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCcc-CCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCE
Confidence 4677788775 223333355677778888888877543 233334556666 777888777 6666554 4666777777
Q ss_pred EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
|++++|.+...+...+..+++|++|+++++.....+.. ....+++|+.|++.++. +..++ ....+++|+.|++++|.
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTSC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCCc
Confidence 77777777665555666777777777764333332221 12344555666555443 22221 22334445555554444
Q ss_pred CCCcccccccccccccceeeec
Q 039786 161 LLMEIPIGIEHLKNLKLLKFAG 182 (210)
Q Consensus 161 ~l~~lp~~l~~l~~L~~l~l~~ 182 (210)
.....|..+..+++|++|++.+
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTT
T ss_pred CcccCcccccCccCCCEEEeCC
Confidence 2222233334444444444433
No 33
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=7.9e-16 Score=111.19 Aligned_cols=149 Identities=17% Similarity=0.144 Sum_probs=115.0
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L 79 (210)
++++|+.|++++ .....++ .++.+++|++|++++|.. . .+..+..++ +|++|++.+ .++. .|..++.+++|
T Consensus 42 ~l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~l~~n~~-~--~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLAN--INVTDLT-GIEYAHNIKDLTINNIHA-T--NYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEES--SCCSCCT-TGGGCTTCSEEEEESCCC-S--CCGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hcCCccEEeccC--CCccChH-HHhcCCCCCEEEccCCCC-C--cchhhhcCC-CCCEEEeECCccCcccChhhcCCCCC
Confidence 467899999996 2223334 688999999999999733 2 234566777 999999998 7765 56688899999
Q ss_pred cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786 80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC 159 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~ 159 (210)
++|++++|.++...+..++.+++|++|+++++.....+. ....+++|+.|++.++. +..++ ....+++|++|++.+|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCc
Confidence 999999999888777889999999999999554223233 45678999999999875 34333 4557899999999998
Q ss_pred C
Q 039786 160 P 160 (210)
Q Consensus 160 ~ 160 (210)
+
T Consensus 192 ~ 192 (197)
T 4ezg_A 192 T 192 (197)
T ss_dssp -
T ss_pred c
Confidence 7
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.63 E-value=4.7e-16 Score=130.06 Aligned_cols=156 Identities=18% Similarity=0.100 Sum_probs=82.3
Q ss_pred CCCCCcEEEEEecCCCcch--HHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC--ChhhhcC
Q 039786 2 KLRQLRKLSIRPQNGNGKD--LCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL--PDWIFKL 76 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~--p~~~~~l 76 (210)
++++|++|++++ ...... .+..++.+++|++|++++|.... .....+..++ +|++|++.+ .+... +.++..+
T Consensus 348 ~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 348 NLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCEE-ECTTTTTTCT-TCSEEECTTCCEECCTTCCTTTTC
T ss_pred ccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCCc-CCHHHhcCCc-cCCeEECCCCcCCCcccchhhhCc
Confidence 567788888875 221111 14456777788888887754322 2223445555 677777766 44432 2235666
Q ss_pred CCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcc-eE--ecCCCCCcccEEEecccCcceeeEEccCCCCcccE
Q 039786 77 KNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYEL-FH--FEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRE 153 (210)
Q Consensus 77 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 153 (210)
++|+.|++++|.+.......++.+++|++|+++++..... +. .....+++|+.|++.++......+...+.+++|++
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 6666666666666555555566666666666663321111 11 11234556666666555322211222334555555
Q ss_pred EEeccCC
Q 039786 154 LRIGPCP 160 (210)
Q Consensus 154 L~i~~~~ 160 (210)
|++++|.
T Consensus 505 L~Ls~N~ 511 (606)
T 3t6q_A 505 VDLSHNR 511 (606)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 5555554
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=122.55 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=121.3
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIR 81 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~ 81 (210)
++++.|++++ +......+..++++++|+.|++++|.. ...+...+..++ +|++|++.+ .++.+|. .+..+++|++
T Consensus 64 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCC-CEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcC-CccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCce
Confidence 5789999986 333333346789999999999998654 333445677777 999999998 7888765 6788999999
Q ss_pred EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
|++++|.+...+...+..+++|+.|+++++.....+.. ....+++|+.|++.++. +..++ ....+++|+.|++++|.
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEECTTSC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEECCCCc
Confidence 99999998887777889999999999985443333332 24567788888887764 33333 23456666777776665
Q ss_pred CCCcc-cccccccccccceeeecc
Q 039786 161 LLMEI-PIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 161 ~l~~l-p~~l~~l~~L~~l~l~~~ 183 (210)
++.+ |..+..+++|++|++.++
T Consensus 219 -l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 219 -LSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp -CCEECTTTTTTCTTCCEEECTTC
T ss_pred -cCccChhhhccCccCCEEECCCC
Confidence 3332 444455555555555544
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=5.7e-16 Score=128.53 Aligned_cols=178 Identities=15% Similarity=0.106 Sum_probs=126.5
Q ss_pred CCCCCcEEEEEecCCCc--chHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC--hhhhcC
Q 039786 2 KLRQLRKLSIRPQNGNG--KDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP--DWIFKL 76 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p--~~~~~l 76 (210)
.+++|++|++++ .... ...+..+..+++|++|++++|......+ .+..++ +|++|++.+ .+...+ ..+..+
T Consensus 345 ~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 345 DLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS--NFLGLE-QLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp BCTTCCEEECCS-SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE--EEETCT-TCCEEECTTSEEESCTTSCTTTTC
T ss_pred cCCCCCEEeCcC-CccCccccccccccccCccCEEECCCCccccccc--cccccC-CCCEEEccCCccccccchhhhhcC
Confidence 456677777764 1111 1124567778888888888765433222 255666 899999987 666543 367888
Q ss_pred CCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCC-cceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEE
Q 039786 77 KNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDY-ELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELR 155 (210)
Q Consensus 77 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 155 (210)
++|++|++++|.+.......++++++|+.|+++++... ..++.....+++|+.|++.++......+...+.+++|++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 99999999999887766778889999999999855332 33445567789999999998764332244456789999999
Q ss_pred eccCCCCCccc-ccccccccccceeeecch
Q 039786 156 IGPCPLLMEIP-IGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 156 i~~~~~l~~lp-~~l~~l~~L~~l~l~~~~ 184 (210)
+.+|. ++.+| ..+..+++|++|++.+++
T Consensus 501 l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 501 MASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 99997 55554 457889999999999854
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.63 E-value=1.4e-15 Score=127.23 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=39.0
Q ss_pred HhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC---ChhhhcCCCccEEEEEeecCCCcchhhhhc
Q 039786 24 LIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL---PDWIFKLKNLIRLGLELSGLAEEPIRVLQA 99 (210)
Q Consensus 24 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~---p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 99 (210)
.++.+++|++|++++|......+...+..++ +|++|++.+ .++.+ |..+..+++|++|++++|.+.......++.
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 4444455555555444332222222233344 555555554 33332 334455555555555555544443444445
Q ss_pred CCCccEEEec
Q 039786 100 SPNLLEILLT 109 (210)
Q Consensus 100 l~~L~~L~l~ 109 (210)
+++|++|+++
T Consensus 399 l~~L~~L~l~ 408 (606)
T 3t6q_A 399 CPQLELLDLA 408 (606)
T ss_dssp CTTCSEEECT
T ss_pred CccCCeEECC
Confidence 5555555554
No 38
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=7.8e-16 Score=119.14 Aligned_cols=124 Identities=18% Similarity=0.102 Sum_probs=74.1
Q ss_pred ceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhh-hcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786 57 LQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVL-QASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW 133 (210)
Q Consensus 57 L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 133 (210)
|++|++.+ .++.++ ..++.+++|++|++++|.++...+..+ ..+++|++|+++++... .+ .....+++|+.|++.
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~-~~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV-KGQVVFAKLKTLDLS 199 (317)
T ss_dssp CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EE-ECCCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cc-ccccccccCCEEECC
Confidence 44444443 333332 244556666666666666655444444 35666777776633211 12 122236777777777
Q ss_pred ccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 134 DFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 134 ~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
++. +..++.....+++|+.|++++|. ++.+|..+..+++|++|++.+++
T Consensus 200 ~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 200 SNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp SSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred CCc-CCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 654 44444445567788888888876 66777777788888888888764
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=2.3e-16 Score=132.83 Aligned_cols=177 Identities=18% Similarity=0.104 Sum_probs=107.4
Q ss_pred CCCCCCcEEEEEecCCCcch-----------------HHHHhh--cCCCCceEEEEecCcccccccccccCCccCceEEE
Q 039786 1 MKLRQLRKLSIRPQNGNGKD-----------------LCGLIA--NLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLY 61 (210)
Q Consensus 1 ~~L~~L~~L~l~~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 61 (210)
+++++|++|++++ +..... +++.++ ++++|++|++++|......+ ..+..++ +|++|+
T Consensus 203 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~-~L~~L~ 279 (636)
T 4eco_A 203 MRLTKLRQFYMGN-SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALP-EMQLIN 279 (636)
T ss_dssp GGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCS-SCCEEE
T ss_pred hcccCCCEEECcC-CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCC-CCCEEE
Confidence 3678899999986 333332 788888 89999999999876555443 4466666 888888
Q ss_pred eec-c-Ccc--CChhhhcC------CCccEEEEEeecCCCcch-hhhhcCCCccEEEecCccCCcceEecCCCCCcccEE
Q 039786 62 LTG-N-MKK--LPDWIFKL------KNLIRLGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKL 130 (210)
Q Consensus 62 l~~-~-~~~--~p~~~~~l------~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 130 (210)
+.+ . ++. +|..++.+ ++|++|++++|.++..+. ..++.+++|++|+++++.....++ ....+++|+.|
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 887 4 663 77766665 888888888888763322 267888888888887433221233 33444566666
Q ss_pred EecccCcceeeEEccCCCCc-ccEEEeccCCCCCcccccccccc--cccceeeecc
Q 039786 131 LLWDFIAVKSVIIEKGAVPD-IRELRIGPCPLLMEIPIGIEHLK--NLKLLKFAGM 183 (210)
Q Consensus 131 ~l~~~~~l~~~~~~~~~~~~-L~~L~i~~~~~l~~lp~~l~~l~--~L~~l~l~~~ 183 (210)
++.++. +..++.....+++ |++|++.+|. ++.+|..+..++ +|++|++.++
T Consensus 359 ~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 359 NLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp ECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSS
T ss_pred ECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCC
Confidence 665543 2233322333444 5555555555 334444433322 4444444443
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=3e-16 Score=121.24 Aligned_cols=148 Identities=18% Similarity=0.123 Sum_probs=59.1
Q ss_pred CCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc---CChhh--hcCCCccEEEEEeecCCCcc---hhhhhc
Q 039786 29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK---LPDWI--FKLKNLIRLGLELSGLAEEP---IRVLQA 99 (210)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~---~p~~~--~~l~~L~~L~l~~~~l~~~~---~~~l~~ 99 (210)
++|++|++++|... ......+..++ +|++|++++ .+.. +|..+ +.+++|++|++++|.++..+ ...+..
T Consensus 149 ~~L~~L~L~~N~l~-~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQAHSL-NFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESCSCC-CCCTTTCCCCS-SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred CCCcEEEeeCCCCc-cchHHHhccCC-CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence 45555555543322 11222333444 455555544 2221 12222 44455555555555544211 112234
Q ss_pred CCCccEEEecCccCCcceE-ecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccce
Q 039786 100 SPNLLEILLTGTYDYELFH-FEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLL 178 (210)
Q Consensus 100 l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l 178 (210)
+++|++|+++++......+ .....+++|+.|++.++. +..++... .++|++|++++|. ++.+|. +..+++|++|
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L 301 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--PAKLSVLDLSYNR-LDRNPS-PDELPQVGNL 301 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSC--CSEEEEEECCSSC-CCSCCC-TTTSCEEEEE
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhc--cCCceEEECCCCC-CCCChh-HhhCCCCCEE
Confidence 4555555554221111111 111223455555555433 22222211 1445555555544 344443 4445555555
Q ss_pred eeecc
Q 039786 179 KFAGM 183 (210)
Q Consensus 179 ~l~~~ 183 (210)
++.++
T Consensus 302 ~L~~N 306 (312)
T 1wwl_A 302 SLKGN 306 (312)
T ss_dssp ECTTC
T ss_pred eccCC
Confidence 55444
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.4e-15 Score=127.30 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=59.7
Q ss_pred CCCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCC
Q 039786 1 MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKN 78 (210)
Q Consensus 1 ~~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~ 78 (210)
+++++|++|++++ +......+..++++++|++|++++|... ..+...+..++ +|++|++.+ .++.+ |.+++.+++
T Consensus 96 ~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 96 AYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred cCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCc
Confidence 3577888888885 2223333455678888888888876443 33333345566 788888887 66664 446778888
Q ss_pred ccEEEEEeecCCCc
Q 039786 79 LIRLGLELSGLAEE 92 (210)
Q Consensus 79 L~~L~l~~~~l~~~ 92 (210)
|++|++++|.++..
T Consensus 173 L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 173 LQNLQLSSNRLTHV 186 (597)
T ss_dssp CCEEECTTSCCSBC
T ss_pred CcEEECcCCCCCCc
Confidence 88888888876553
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=7e-16 Score=121.07 Aligned_cols=177 Identities=12% Similarity=0.013 Sum_probs=122.9
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCccE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLIR 81 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~~ 81 (210)
++|++|++++ ..........++++++|++|++++|... ......+..++ +|++|++.+ .++.+|.. ++.+++|++
T Consensus 52 ~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 4788899885 2222222346788899999999886443 33334566666 899999988 77887764 788899999
Q ss_pred EEEEeecCCCcch-hhhhcCCCccEEEecCccCCcce-EecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786 82 LGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELF-HFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC 159 (210)
Q Consensus 82 L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~ 159 (210)
|++++|.++..+. ..++.+++|++|+++++.....+ ......+++|+.|++.++......+...+.+++|++|++.+|
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 9999998876554 46788999999999854222222 223456788888988877533322334556788888888888
Q ss_pred CCCCcccccc-cccccccceeeecch
Q 039786 160 PLLMEIPIGI-EHLKNLKLLKFAGMV 184 (210)
Q Consensus 160 ~~l~~lp~~l-~~l~~L~~l~l~~~~ 184 (210)
. ++.+|..+ ..+++|++|++.++.
T Consensus 209 ~-l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 209 Q-HILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp C-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred c-cccchhhhhhhcccccEEECCCCc
Confidence 7 56666554 457888888887764
No 43
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=1.4e-15 Score=116.34 Aligned_cols=167 Identities=21% Similarity=0.265 Sum_probs=125.5
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
++++|+.|++++ .....+ +.++.+++|++|++++|......+ +..++ +|++|++.+ .++.+| .+..+++|+
T Consensus 44 ~l~~L~~L~l~~--~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~-~L~~L~l~~n~l~~~~-~l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANN--SDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP---LANLK-NLGWLFLDENKVKDLS-SLKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTT--SCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---GTTCT-TCCEEECCSSCCCCGG-GGTTCTTCC
T ss_pred hcCcccEEEccC--CCcccC-hhHhcCCCCCEEEccCCccCCCcc---cccCC-CCCEEECCCCcCCCCh-hhccCCCCC
Confidence 357899999986 222222 347889999999999875544322 66666 899999998 777776 488899999
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
+|++++|.++.. ..++.+++|+.|+++++.... + .....+++|+.|++.++. +..++. ...+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCc
Confidence 999999988763 578899999999998443222 2 234567899999998875 333332 5678999999999997
Q ss_pred CCCcccccccccccccceeeecch
Q 039786 161 LLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 161 ~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
++.+|. +..+++|+.|++.+++
T Consensus 190 -i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 190 -ISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp -CCBCGG-GTTCTTCSEEEEEEEE
T ss_pred -CCCChh-hccCCCCCEEECcCCc
Confidence 677764 7889999999998874
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=1.1e-15 Score=119.44 Aligned_cols=171 Identities=18% Similarity=0.130 Sum_probs=114.8
Q ss_pred CCCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCc
Q 039786 1 MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNL 79 (210)
Q Consensus 1 ~~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L 79 (210)
+++++|++|++++ .....+.. ++.+++|+.|++++|...... .+..++ +|+.|++.+ .+..++. +..+++|
T Consensus 152 ~~l~~L~~L~l~~--~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~---~~~~l~-~L~~L~l~~n~l~~~~~-~~~~~~L 223 (347)
T 4fmz_A 152 SNMTGLNYLTVTE--SKVKDVTP-IANLTDLYSLSLNYNQIEDIS---PLASLT-SLHYFTAYVNQITDITP-VANMTRL 223 (347)
T ss_dssp TTCTTCCEEECCS--SCCCCCGG-GGGCTTCSEEECTTSCCCCCG---GGGGCT-TCCEEECCSSCCCCCGG-GGGCTTC
T ss_pred hhCCCCcEEEecC--CCcCCchh-hccCCCCCEEEccCCcccccc---cccCCC-ccceeecccCCCCCCch-hhcCCcC
Confidence 3578899999986 22222222 788899999999886543322 245555 788888887 6666553 6778888
Q ss_pred cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786 80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC 159 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~ 159 (210)
++|++++|.++..+. +..+++|+.|+++++.... + .....+++|+.|++.++. +..+ .....+++|+.|++.+|
T Consensus 224 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQ-ISDI-SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS
T ss_pred CEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCc-cCCC-hhhcCCCCCCEEECcCC
Confidence 888888888766443 7788888888887443222 2 234567788888887764 3333 22445778888888888
Q ss_pred CCCCcccccccccccccceeeecchH
Q 039786 160 PLLMEIPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 160 ~~l~~lp~~l~~l~~L~~l~l~~~~~ 185 (210)
......|..+..+++|++|++++|+.
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred cCCCcChhHhhccccCCEEEccCCcc
Confidence 74344555667788888888887753
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.1e-15 Score=132.17 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=95.1
Q ss_pred HHHHhhcCCCCceEEEEecCcccc-----------------ccccccc--CCccCceEEEeec-cC-ccCChhhhcCCCc
Q 039786 21 LCGLIANLKNLESLTVEMTSKEEI-----------------LDLLSLS--SPPQYLQRLYLTG-NM-KKLPDWIFKLKNL 79 (210)
Q Consensus 21 ~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~~L~~L~l~~-~~-~~~p~~~~~l~~L 79 (210)
++.+++++++|+.|++++|...+. .+ ..+. .++ +|++|++.+ .+ ..+|..++.+++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCC
Confidence 556677777777777777655441 21 2233 555 677777766 33 3477777777777
Q ss_pred cEEEEEeec-CCC-cchhhhhcC-------CCccEEEecCccCCcceEe--cCCCCCcccEEEecccCcceeeEEccCCC
Q 039786 80 IRLGLELSG-LAE-EPIRVLQAS-------PNLLEILLTGTYDYELFHF--EAGWFPKLQKLLLWDFIAVKSVIIEKGAV 148 (210)
Q Consensus 80 ~~L~l~~~~-l~~-~~~~~l~~l-------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 148 (210)
+.|++++|. ++. ..+..++.+ ++|+.|+++++... .++. ....+++|+.|++.++.. ..++ ..+.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV-RHLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC-CBCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc-ccch-hhcCC
Confidence 777777776 654 333333433 47777777633322 3443 345666777777766542 2444 45556
Q ss_pred CcccEEEeccCCCCCccccccccccc-ccceeeecch
Q 039786 149 PDIRELRIGPCPLLMEIPIGIEHLKN-LKLLKFAGMV 184 (210)
Q Consensus 149 ~~L~~L~i~~~~~l~~lp~~l~~l~~-L~~l~l~~~~ 184 (210)
++|+.|++++|. ++.+|..+..+++ |++|++.++.
T Consensus 595 ~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 595 VKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp SEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC
T ss_pred CcceEEECcCCc-cccchHHHhhccccCCEEECcCCC
Confidence 667777777666 4466666666666 6666666654
No 46
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=9.3e-15 Score=108.57 Aligned_cols=177 Identities=18% Similarity=0.113 Sum_probs=128.9
Q ss_pred CCCCCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCC
Q 039786 1 MKLRQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKN 78 (210)
Q Consensus 1 ~~L~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~ 78 (210)
+++++|++|++++ ......++ ..++++++|++|++++|+.....+...+..++ +|++|++.+ .++.+|. +..+++
T Consensus 52 ~~l~~L~~L~l~~-n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~-~L~~L~l~~n~l~~lp~-~~~l~~ 128 (239)
T 2xwt_C 52 SNLPNISRIYVSI-DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGLKMFPD-LTKVYS 128 (239)
T ss_dssp TTCTTCCEEEEEC-CSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT-TCCEEEEEEECCCSCCC-CTTCCB
T ss_pred cCCCCCcEEeCCC-CCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC-CCCEEeCCCCCCccccc-cccccc
Confidence 3678999999996 22133333 46788999999999984444444445566777 899999988 7888886 777788
Q ss_pred cc---EEEEEee-cCCCcchhhhhcCCCcc-EEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCC-Ccc
Q 039786 79 LI---RLGLELS-GLAEEPIRVLQASPNLL-EILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAV-PDI 151 (210)
Q Consensus 79 L~---~L~l~~~-~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L 151 (210)
|+ +|++++| .++..+...++++++|+ .|+++++... .++......++|+.|++.++..+..++.. ...+ ++|
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence 87 9999999 78777777788999999 9999743222 23322222268999999887556555433 3456 899
Q ss_pred cEEEeccCCCCCcccccccccccccceeeecch
Q 039786 152 RELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 152 ~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
+.|++.+|. ++.+|.. .+++|++|++.++.
T Consensus 208 ~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 208 SLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp SEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred cEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 999999987 6777765 78899999987764
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=9.1e-16 Score=132.68 Aligned_cols=176 Identities=18% Similarity=0.065 Sum_probs=106.2
Q ss_pred CCCCCCcEEEEEecCCCcc-----------------hHHHHhh--cCCCCceEEEEecCcccccccccccCCccCceEEE
Q 039786 1 MKLRQLRKLSIRPQNGNGK-----------------DLCGLIA--NLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLY 61 (210)
Q Consensus 1 ~~L~~L~~L~l~~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 61 (210)
++|++|+.|++++ +.... .+++.++ ++++|++|++++|......+ ..+..++ +|++|+
T Consensus 445 ~~L~~L~~L~Ls~-N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~-~L~~L~ 521 (876)
T 4ecn_A 445 QRLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLP-ELQSLN 521 (876)
T ss_dssp GGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCS-SCCEEE
T ss_pred hcCCCCCEEECcC-CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCC-CCCEEE
Confidence 3577888888885 22222 2677766 88888888888876544443 4455666 788888
Q ss_pred eec-c-Ccc--CChhhhcCC-------CccEEEEEeecCCCcch-hhhhcCCCccEEEecCccCCcceEecCCCCCcccE
Q 039786 62 LTG-N-MKK--LPDWIFKLK-------NLIRLGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQK 129 (210)
Q Consensus 62 l~~-~-~~~--~p~~~~~l~-------~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 129 (210)
+.+ . ++. +|..++.++ +|++|++++|.++..+. ..++.+++|+.|+++++... .++ ....+++|+.
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD 599 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence 776 4 553 666555443 77778777777663221 25777777777777733222 333 4555667777
Q ss_pred EEecccCcceeeEEccCCCCc-ccEEEeccCCCCCcccccccccc--cccceeeecc
Q 039786 130 LLLWDFIAVKSVIIEKGAVPD-IRELRIGPCPLLMEIPIGIEHLK--NLKLLKFAGM 183 (210)
Q Consensus 130 L~l~~~~~l~~~~~~~~~~~~-L~~L~i~~~~~l~~lp~~l~~l~--~L~~l~l~~~ 183 (210)
|++.++.. ..++.....+++ |+.|++.+|. ++.+|..+..++ +|+.|++.++
T Consensus 600 L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 600 LKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp EECCSSCC-SCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred EECcCCcc-ccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCC
Confidence 77766542 244434445566 6667666666 445555444332 2555555444
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=4e-15 Score=116.29 Aligned_cols=169 Identities=14% Similarity=0.187 Sum_probs=123.9
Q ss_pred CCCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCc
Q 039786 1 MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNL 79 (210)
Q Consensus 1 ~~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L 79 (210)
+++++|+.|++++ ...... ...++.+++|++|++++|...... .+..++ +|++|++.+ .+..++. +..+++|
T Consensus 129 ~~l~~L~~L~l~~-n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L 201 (347)
T 4fmz_A 129 ANLTKMYSLNLGA-NHNLSD-LSPLSNMTGLNYLTVTESKVKDVT---PIANLT-DLYSLSLNYNQIEDISP-LASLTSL 201 (347)
T ss_dssp TTCTTCCEEECTT-CTTCCC-CGGGTTCTTCCEEECCSSCCCCCG---GGGGCT-TCSEEECTTSCCCCCGG-GGGCTTC
T ss_pred ccCCceeEEECCC-CCCccc-ccchhhCCCCcEEEecCCCcCCch---hhccCC-CCCEEEccCCccccccc-ccCCCcc
Confidence 3678899999985 222222 344788999999999886554332 255566 899999988 7777764 7888999
Q ss_pred cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786 80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC 159 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~ 159 (210)
+.|++++|.+..... ++.+++|+.|+++++.... +. ....+++|+.|++.++. +..+ .....+++|++|++.+|
T Consensus 202 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LS-PLANLSQLTWLEIGTNQ-ISDI-NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSS
T ss_pred ceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Cc-chhcCCCCCEEECCCCc-cCCC-hhHhcCCCcCEEEccCC
Confidence 999999998766443 7889999999998543222 11 15678899999998875 3333 23567899999999998
Q ss_pred CCCCcccccccccccccceeeecch
Q 039786 160 PLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 160 ~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
. ++.++ .+..+++|++|++++|.
T Consensus 276 ~-l~~~~-~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 276 Q-ISDIS-VLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp C-CCCCG-GGGGCTTCSEEECCSSC
T ss_pred c-cCCCh-hhcCCCCCCEEECcCCc
Confidence 7 66664 57888999999999875
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.61 E-value=2.8e-15 Score=116.51 Aligned_cols=175 Identities=22% Similarity=0.186 Sum_probs=100.0
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L 79 (210)
++++|++|++++ .......+..++++++|++|++++|... ..+.. + .+ +|++|++.+ .++.++. .+..+++|
T Consensus 74 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~--~~-~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 74 NLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK-M--PK-TLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp TCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS-C--CT-TCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred cCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChh-h--cc-cccEEECCCCcccccCHhHhcCCccc
Confidence 466777777764 2222222556677777777777765432 21111 1 12 677777766 5565543 46778888
Q ss_pred cEEEEEeecCCC--cchhhhhcCCCccEEEecCccCCc--------------------ce-EecCCCCCcccEEEecccC
Q 039786 80 IRLGLELSGLAE--EPIRVLQASPNLLEILLTGTYDYE--------------------LF-HFEAGWFPKLQKLLLWDFI 136 (210)
Q Consensus 80 ~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~--------------------~~-~~~~~~~~~L~~L~l~~~~ 136 (210)
+.|++++|.+.. .....++.+++|++|+++++.... .+ ......+++|+.|++.++.
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 888888887654 334566777777777776322110 00 0112334555666665543
Q ss_pred cceeeEE-ccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 137 AVKSVII-EKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 137 ~l~~~~~-~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
+..++. ....+++|++|++++|. ++.+|.++..+++|++|++.++.
T Consensus 228 -l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 228 -ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp -CCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred -CceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence 222221 23345677777777775 55667777777777777777654
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=2.6e-15 Score=122.68 Aligned_cols=124 Identities=18% Similarity=0.121 Sum_probs=71.4
Q ss_pred ceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhh-cCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786 57 LQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQ-ASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW 133 (210)
Q Consensus 57 L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 133 (210)
|+.|++.+ .++.+ |..++.+++|++|++++|.++..++..+. .+++|+.|+++++.... + .....+++|+.|+++
T Consensus 122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~-~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-V-KGQVVFAKLKTLDLS 199 (487)
T ss_dssp CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-E-ECCCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-c-cccccCCCCCEEECC
Confidence 44444443 33332 33445566666666666665554444443 56666666666332111 1 122235677777776
Q ss_pred ccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 134 DFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 134 ~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
++. +..++.....+++|+.|++++|. ++.+|..+..+++|+.+++.+++
T Consensus 200 ~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 200 SNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred CCC-CCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 654 34444445566777777777776 56677777777788888887754
No 51
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=2.4e-15 Score=112.59 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=120.0
Q ss_pred CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEE
Q 039786 5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRL 82 (210)
Q Consensus 5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L 82 (210)
+.+.+++++ .....++..+. ++++.|+++++.... .....+..++ +|++|++.+ .++.++ ..+..+++|++|
T Consensus 15 ~~~~l~~~~--~~l~~~p~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQG--KSLDSVPSGIP--ADTEKLDLQSTGLAT-LSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTT--CCCSSCCSCCC--TTCCEEECTTSCCCC-CCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCeEEecCC--CCccccCCCCC--CCCCEEEccCCCcCc-cCHhHhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 355666654 33334444333 588999998865433 3334566676 899999988 777654 457888999999
Q ss_pred EEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCCCcccEEEecccCcceeeEE-ccCCCCcccEEEeccCC
Q 039786 83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCP 160 (210)
Q Consensus 83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~ 160 (210)
++++|.++..+...++.+++|++|+++++... .+... ...+++|+.|++.++. +..++. ..+.+++|++|++.+|.
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc
Confidence 99999988777777889999999999844322 22222 3567899999998764 444443 34567899999999987
Q ss_pred CCCcccc-cccccccccceeeecch
Q 039786 161 LLMEIPI-GIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 161 ~l~~lp~-~l~~l~~L~~l~l~~~~ 184 (210)
++.+|. .+..+++|++|++.+++
T Consensus 167 -l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 167 -LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -CCccCHHHHhCCCCCCEEEeeCCc
Confidence 555554 56788999999998854
No 52
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.59 E-value=3.8e-15 Score=120.45 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=14.8
Q ss_pred CceEEEeec-cCccC-Chh-hhcCCCccEEEEEeecC
Q 039786 56 YLQRLYLTG-NMKKL-PDW-IFKLKNLIRLGLELSGL 89 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~-p~~-~~~l~~L~~L~l~~~~l 89 (210)
+|++|++.+ .++.+ |.. +..+++|++|++++|.+
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 444444444 33332 222 34444444444444443
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=2.9e-15 Score=116.56 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=35.2
Q ss_pred CCcccEEEecccCcceeeEE-ccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 124 FPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 124 ~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
+++|+.|++.++. +..++. ....+++|+.|++.+|. ++.+|.++..+++|++|++.++.
T Consensus 216 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 216 YSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC
Confidence 3455555555433 222221 23346777777777776 56777777777777777777754
No 54
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=3.5e-16 Score=121.80 Aligned_cols=179 Identities=17% Similarity=0.208 Sum_probs=128.2
Q ss_pred CCCCCcEEEEEecCCCc-chHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCcc--CChhhhcC
Q 039786 2 KLRQLRKLSIRPQNGNG-KDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKK--LPDWIFKL 76 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~--~p~~~~~l 76 (210)
++++|++|++++ .... ..++..++.+++|++|++++|... ......+..++ +|++|++.+ .++. ++..+..+
T Consensus 91 ~~~~L~~L~L~~-~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 91 SPFRVQHMDLSN-SVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCBCCCEEECTT-CEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred cCCCCCEEEccC-CCcCHHHHHHHHhhCCCCCEEeCcCcccC-HHHHHHHhcCC-CCCEEECCCCCCCCHHHHHHHHhcC
Confidence 468899999985 2222 337788899999999999987532 22234456666 899999987 3553 66667889
Q ss_pred CCccEEEEEee-cCCCcc-hhhhhcCC-CccEEEecCcc--CC-cceEecCCCCCcccEEEecccCcce-eeEEccCCCC
Q 039786 77 KNLIRLGLELS-GLAEEP-IRVLQASP-NLLEILLTGTY--DY-ELFHFEAGWFPKLQKLLLWDFIAVK-SVIIEKGAVP 149 (210)
Q Consensus 77 ~~L~~L~l~~~-~l~~~~-~~~l~~l~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~ 149 (210)
++|++|++++| .++... ...+..++ +|++|+++++. .. ..+......+++|+.|++.+|..+. ..+.....++
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 99999999999 787653 45577899 99999998552 11 2233334568899999999887433 2233445689
Q ss_pred cccEEEeccCCCCCc-ccccccccccccceeeecc
Q 039786 150 DIRELRIGPCPLLME-IPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 150 ~L~~L~i~~~~~l~~-lp~~l~~l~~L~~l~l~~~ 183 (210)
+|++|++.+|..... ....+..+++|++|++.+|
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999999999973321 1124678899999999987
No 55
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=3.4e-15 Score=124.81 Aligned_cols=167 Identities=22% Similarity=0.276 Sum_probs=122.3
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
+|++|+.|++++ .....+ +.++.+++|+.|++++|......+ +..++ +|++|+|.+ .++.+| .+..+++|+
T Consensus 41 ~L~~L~~L~l~~--n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~-~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANN--SDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP---LTNLK-NLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTT--CCCCCC-TTGGGCTTCCEEECTTSCCCCCGG---GGGCT-TCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred cCCCCCEEECcC--CCCCCC-hHHccCCCCCEEEeeCCCCCCChh---hccCC-CCCEEECcCCCCCCCh-hhccCCCCC
Confidence 367888888875 222222 357889999999998865544322 56666 899999988 777776 678889999
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
.|++++|.+.. +..++.+++|+.|+|+++.... + .....+++|+.|++.++.. ..++. ...+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISD--INGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCC--CccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcC-CCchh-hccCCCCCEEECcCCC
Confidence 99999998776 3568889999999998443222 2 3445678999999987753 33322 5678899999999887
Q ss_pred CCCcccccccccccccceeeecch
Q 039786 161 LLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 161 ~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
++.+| .+..+++|+.|++.+++
T Consensus 187 -i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 187 -ISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -CCBCG-GGTTCTTCSEEECCSEE
T ss_pred -CCCCh-HHccCCCCCEEEccCCc
Confidence 66664 57888999999998864
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=9.5e-15 Score=110.52 Aligned_cols=173 Identities=22% Similarity=0.183 Sum_probs=126.8
Q ss_pred CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCccEE
Q 039786 5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLIRL 82 (210)
Q Consensus 5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~~L 82 (210)
+.+.+++++ .....++..+. +++++|+++++... ..+...+..++ +|++|++.+ .++.+|.. +..+++|++|
T Consensus 17 ~~~~l~~~~--~~l~~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSS--KKLTAIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTT--SCCSSCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCEEEccC--CCCCccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 466777764 22333443332 68999999986543 33334577777 999999998 78887764 4789999999
Q ss_pred EEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccCCC
Q 039786 83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCPL 161 (210)
Q Consensus 83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~~ 161 (210)
++++|.++..+...+..+++|++|+++++............+++|+.|++.++. +..++.. .+.+++|++|++.+|.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~- 168 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ- 168 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCc-
Confidence 999999988777788999999999998443222222224567999999999875 4444433 3568999999999998
Q ss_pred CCcccc-cccccccccceeeecchH
Q 039786 162 LMEIPI-GIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 162 l~~lp~-~l~~l~~L~~l~l~~~~~ 185 (210)
++.+|. .+..+++|++|+++++..
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcEeChhHhccCCCcCEEECCCCcC
Confidence 566655 468899999999998743
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=1.4e-14 Score=112.60 Aligned_cols=175 Identities=17% Similarity=0.148 Sum_probs=113.0
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRL 82 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L 82 (210)
++|++|++++ ..........++++++|++|++++|... ......+..++ +|++|++.+ .++.+|..+. ++|++|
T Consensus 52 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLV-KLERLYLSKNQLKELPEKMP--KTLQEL 126 (330)
T ss_dssp TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC--TTCCEE
T ss_pred CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCC-CCCEEECCCCcCCccChhhc--ccccEE
Confidence 5788899886 2222222346889999999999986543 33335567777 899999988 7888886544 799999
Q ss_pred EEEeecCCCcchhhhhcCCCccEEEecCccCCc--ceEecCCCCCcccEEEecccCc--------------------cee
Q 039786 83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYE--LFHFEAGWFPKLQKLLLWDFIA--------------------VKS 140 (210)
Q Consensus 83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~--------------------l~~ 140 (210)
++++|.++..+...++.+++|+.|+++.+.... ........+++|+.|++.++.- +..
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 206 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCc
Confidence 999999888777788999999999998432211 1111223345555555554321 111
Q ss_pred e-EEccCCCCcccEEEeccCCCCCccc-ccccccccccceeeecch
Q 039786 141 V-IIEKGAVPDIRELRIGPCPLLMEIP-IGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 141 ~-~~~~~~~~~L~~L~i~~~~~l~~lp-~~l~~l~~L~~l~l~~~~ 184 (210)
+ +.....+++|+.|++.+|. ++.++ ..+..+++|++|++.++.
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred cCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence 1 1123345666777776666 33333 345666777777776664
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=2.7e-15 Score=113.82 Aligned_cols=176 Identities=16% Similarity=0.062 Sum_probs=122.6
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIR 81 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~ 81 (210)
++|++|++++ .......+..++++++|++|++++|.. ...+...+..++ +|++|++.+ .++.++ ..+..+++|++
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCC-CEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCC-CcccccCHhHhccccCCcEEECCCCcC-CccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccccE
Confidence 3589999985 222222234778899999999988644 333334566676 899999988 677654 57788999999
Q ss_pred EEEEeecCCCcchhhhhcCCCccEEEecCcc-CCcceEecCCCCCcccEEEecccCcceeeEE-ccCCCCccc----EEE
Q 039786 82 LGLELSGLAEEPIRVLQASPNLLEILLTGTY-DYELFHFEAGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIR----ELR 155 (210)
Q Consensus 82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~----~L~ 155 (210)
|++.+|.+...+...++.+++|++|+++++. ....++.....+++|+.|++.++. +..++. ....+++|+ .|+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEE
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeee
Confidence 9999998877665568899999999998432 221233345667899999998765 333321 122334444 788
Q ss_pred eccCCCCCcccccccccccccceeeecch
Q 039786 156 IGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 156 i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
+++|. ++.++.......+|++|++.++.
T Consensus 184 ls~n~-l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 184 LSLNP-MNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp CCSSC-CCEECTTSSCSCCEEEEECCSSC
T ss_pred cCCCc-ccccCccccCCCcccEEECCCCc
Confidence 88887 66677666566689999998875
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=129.13 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=124.7
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCcc
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNLI 80 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L~ 80 (210)
.++|++|++++ +......+..++++++|++|++++|......+...+..++ +|++|++++ .+.. .|.+++.+++|+
T Consensus 23 p~~l~~LdLs~-N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 23 LNTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp CTTCCEEEEES-CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCcCEEECCC-CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccC
Confidence 36899999996 3333444667889999999999987665555556677787 899999988 6776 477889999999
Q ss_pred EEEEEeecCCCcchh--hhhcCCCccEEEecCccCCcc-eEecCCCCCcccEEEecccCcceeeEEccCCC--CcccEEE
Q 039786 81 RLGLELSGLAEEPIR--VLQASPNLLEILLTGTYDYEL-FHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAV--PDIRELR 155 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~--~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~L~~L~ 155 (210)
+|++++|.++...+. .++.+++|++|+++.+..... .......+++|+.|++.++......+...+.+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 999999988764333 378899999999984432221 12234678899999988764322111122223 6788888
Q ss_pred eccCCCCCccccccccccc------ccceeeecc
Q 039786 156 IGPCPLLMEIPIGIEHLKN------LKLLKFAGM 183 (210)
Q Consensus 156 i~~~~~l~~lp~~l~~l~~------L~~l~l~~~ 183 (210)
+..|......|..+..+++ |++|++.++
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 8887754555555555544 788888776
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=111.53 Aligned_cols=83 Identities=18% Similarity=0.084 Sum_probs=34.6
Q ss_pred CCCcEEEEEecCCCcchHHHHh--hcCCCCceEEEEecCcccccc---cccccCCccCceEEEeec-cCccCC-hhhhcC
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLI--ANLKNLESLTVEMTSKEEILD---LLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKL 76 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l 76 (210)
++|++|++++ .......+..+ +.+++|++|++++|....... ...+..++ +|++|++.+ .+..++ ..++.+
T Consensus 91 ~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLED-LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEES-CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeC-CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCcchhhHHHhccC
Confidence 3455555553 22222223333 445555555555543322111 01112233 455555554 444322 344445
Q ss_pred CCccEEEEEeec
Q 039786 77 KNLIRLGLELSG 88 (210)
Q Consensus 77 ~~L~~L~l~~~~ 88 (210)
++|++|++++|.
T Consensus 169 ~~L~~L~Ls~N~ 180 (310)
T 4glp_A 169 PALTSLDLSDNP 180 (310)
T ss_dssp TTCCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 555555555554
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.56 E-value=1.8e-14 Score=116.84 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=98.4
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
++++|++|++++ .....++ .++.+++|++|++++|..... + +..++ +|++|++.+ .++.+| ++.+++|+
T Consensus 40 ~l~~L~~L~Ls~--n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~-~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHN--SSITDMT-GIEKLTGLTKLICTSNNITTL-D---LSQNT-NLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCS--SCCCCCT-TGGGCTTCSEEECCSSCCSCC-C---CTTCT-TCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred HcCCCCEEEccC--CCcccCh-hhcccCCCCEEEccCCcCCeE-c---cccCC-CCCEEECcCCCCceee--cCCCCcCC
Confidence 467889999886 2222233 678888999999988654332 2 45555 788888887 677665 67788888
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
+|++++|.++..+ ++.+++|++|+++.+.-.. + ....+++|+.|++.++..+..+ ..+.+++|++|++.+|.
T Consensus 110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCeec---CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 8888888776642 6777888888887332111 1 2445666667766665444433 23345555566555554
Q ss_pred CCCcccccccccccccceeeec
Q 039786 161 LLMEIPIGIEHLKNLKLLKFAG 182 (210)
Q Consensus 161 ~l~~lp~~l~~l~~L~~l~l~~ 182 (210)
++.+| +..+++|++|++.+
T Consensus 182 -l~~l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 182 -ITELD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp -CCCCC--CTTCTTCCEEECCS
T ss_pred -cceec--cccCCCCCEEECcC
Confidence 34343 33444444444444
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=1.1e-14 Score=110.21 Aligned_cols=167 Identities=23% Similarity=0.180 Sum_probs=121.8
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNL 79 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L 79 (210)
++++|++|++++ +. ... .+.++++++|++|++++|... ..+...+..++ +|++|++.+ .++.++. .++.+++|
T Consensus 61 ~l~~L~~L~l~~-n~-l~~-~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 61 YLPNVRYLALGG-NK-LHD-ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLT-NLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp GCTTCCEEECTT-SC-CCC-CGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cCCCCcEEECCC-CC-CCC-chhhcCCCCCCEEECCCCccC-ccChhHhcCCc-CCCEEECCCCcCCccCHHHhccCCCC
Confidence 578999999986 22 222 247889999999999987543 33334456676 899999998 7887654 57889999
Q ss_pred cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEecc
Q 039786 80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGP 158 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~ 158 (210)
++|++++|.++..+...++.+++|+.|+++++.-..........+++|+.|++.++. +..++.. .+.+++|+.|++.+
T Consensus 136 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccC
Confidence 999999999988777778999999999998553222222223567899999999875 3444333 45789999999999
Q ss_pred CCCCCcccccccccccccceeee
Q 039786 159 CPLLMEIPIGIEHLKNLKLLKFA 181 (210)
Q Consensus 159 ~~~l~~lp~~l~~l~~L~~l~l~ 181 (210)
|+... .+++++.+++.
T Consensus 215 N~~~~-------~~~~l~~l~~~ 230 (272)
T 3rfs_A 215 NPWDC-------TCPGIRYLSEW 230 (272)
T ss_dssp SCBCC-------CTTTTHHHHHH
T ss_pred CCccc-------cCcHHHHHHHH
Confidence 97332 24455555544
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=118.72 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=68.5
Q ss_pred CceEEEeec-cCcc-CChhhhcCCCccEEEEEeecCCCcc--hhhhhcCCCccEEEecCccCCcceEe-cCCCC------
Q 039786 56 YLQRLYLTG-NMKK-LPDWIFKLKNLIRLGLELSGLAEEP--IRVLQASPNLLEILLTGTYDYELFHF-EAGWF------ 124 (210)
Q Consensus 56 ~L~~L~l~~-~~~~-~p~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~------ 124 (210)
+|++|++++ .++. +|.+++.+++|+.|++++|.++..+ +..++.+++|++|+++++.....++. ....+
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 556666655 4444 4555555556666666655554421 23355555556555552221110111 11222
Q ss_pred ----------------CcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCccccc-ccccccccceeeecch
Q 039786 125 ----------------PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGMV 184 (210)
Q Consensus 125 ----------------~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~~ 184 (210)
++|+.|++.++. +..++.....+++|++|++.+|. ++.+|.. +..+++|+++++.+++
T Consensus 405 ~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 456666665543 33444444466777777777776 5667765 6677778888777753
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.56 E-value=6.9e-15 Score=121.61 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=94.6
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIR 81 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~ 81 (210)
++|++|++++ .......+..++++++|++|++++|... ......+..++ +|++|++++ .++.++. +++.+++|++
T Consensus 26 ~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSF-NKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCS-SCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcC-CccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcE
Confidence 4788888885 2233333456788888888888876443 33334566666 888888887 6777554 4788888888
Q ss_pred EEEEeecCCCcc-hhhhhcCCCccEEEecCccCCcceE-ecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786 82 LGLELSGLAEEP-IRVLQASPNLLEILLTGTYDYELFH-FEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC 159 (210)
Q Consensus 82 L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~ 159 (210)
|++++|.++..+ +..++.+++|++|+++++.....++ .....+++|+.|++.++......+...+.+++|++|++..|
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 888888876532 3467788888888887443222222 23455677788877765532222222233344444444433
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.56 E-value=2.4e-14 Score=116.32 Aligned_cols=51 Identities=27% Similarity=0.345 Sum_probs=24.1
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 109 (210)
+|++|++.+ .++.++ .+..+++|++|++++|.+...+ .++.+++|+.|+++
T Consensus 222 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLG 273 (466)
T ss_dssp TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred CCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccch--hhhcCCCCCEEECC
Confidence 455555544 333333 3444555555555555443322 14455555555554
No 66
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.55 E-value=3.2e-14 Score=115.59 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=61.0
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD 134 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 134 (210)
+|++|++.+ .++.++. +..+++|+.|++++|.+...+ .++.+++|+.|+++++...... ....+++|+.|++.+
T Consensus 266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYN 340 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCS
T ss_pred CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCch--hhccCccCCEeECCC
Confidence 455555554 4444432 445555555555555544422 2455566666666533211111 133456666666665
Q ss_pred cCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 135 FIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 135 ~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
+. +..+ .....+++|+.|++.+|. ++..+. +..+++|++|++.+++
T Consensus 341 n~-l~~~-~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 341 NK-VSDV-SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp SC-CCCC-GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred Cc-cCCc-hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 53 2222 233456667777776666 333332 5666677777766653
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=7.1e-15 Score=112.42 Aligned_cols=174 Identities=21% Similarity=0.131 Sum_probs=128.9
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
++++++.+++++ .....++..+. ++++.|++++|... ......+..++ +|++|++.+ .++.++.. +.+++|+
T Consensus 8 ~l~~l~~l~~~~--~~l~~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 8 KVASHLEVNCDK--RNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYT-RLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp CSTTCCEEECTT--SCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCT-TCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccCCccEEECCC--CCCCcCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCC-CCCEEECCCCccCcccCC-CCCCcCC
Confidence 578899999875 33344444332 68999999986543 33345577777 999999998 77777644 7889999
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPC 159 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~ 159 (210)
+|++++|.++..+ ..+..+++|++|+++++............+++|+.|++.++. +..++.. ...+++|+.|++.+|
T Consensus 81 ~L~Ls~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCcCc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC
Confidence 9999999987543 456889999999998443222222335677899999999875 4444433 346789999999999
Q ss_pred CCCCcccccc-cccccccceeeecchH
Q 039786 160 PLLMEIPIGI-EHLKNLKLLKFAGMVK 185 (210)
Q Consensus 160 ~~l~~lp~~l-~~l~~L~~l~l~~~~~ 185 (210)
. ++.+|.++ ..+++|++|++.++..
T Consensus 159 ~-l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 159 N-LTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp C-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred c-CCccCHHHhcCcCCCCEEECCCCcC
Confidence 8 77777765 7799999999998753
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.54 E-value=5.9e-15 Score=122.43 Aligned_cols=158 Identities=18% Similarity=0.097 Sum_probs=99.6
Q ss_pred hcCCCCceEEEEecCcccccc-cccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcch-hhhhcCCC
Q 039786 26 ANLKNLESLTVEMTSKEEILD-LLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPI-RVLQASPN 102 (210)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~ 102 (210)
+.+++|+.|++++|....... ...+..++ +|++|++.+ .+..+|..+..+++|++|++++|.+..... ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccC-ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 445566666665543322110 12233444 677777766 555555456667777777777776555432 35667788
Q ss_pred ccEEEecCccCCcceEecCCCCCcccEEEecccCcc-eeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeee
Q 039786 103 LLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAV-KSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFA 181 (210)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~ 181 (210)
|++|+++++......+.....+++|+.|++.++... ..++.....+++|+.|++.+|......|..+..+++|++|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 888888744322222233456788888888887643 2345455678899999999888433447778889999999998
Q ss_pred cch
Q 039786 182 GMV 184 (210)
Q Consensus 182 ~~~ 184 (210)
++.
T Consensus 503 ~n~ 505 (570)
T 2z63_A 503 SNQ 505 (570)
T ss_dssp SSC
T ss_pred CCc
Confidence 874
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=3.5e-14 Score=106.27 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=115.0
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIR 81 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~ 81 (210)
++|++|++++ .......+..++++++|++|++++|.... .....+..++ +|++|++.+ .++.+| ..+..+++|++
T Consensus 35 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCC-cCCEEECCCCcccccChhHhcccCCCCE
Confidence 5789999986 33333334568899999999999865433 3334566777 999999998 788766 46788999999
Q ss_pred EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEecccCcceeeEE-ccCCCCcccEEEeccC
Q 039786 82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPC 159 (210)
Q Consensus 82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~ 159 (210)
|++++|.++..+...++.+++|+.|+++++... .+.. ....+++|+.|++.++. +..++. ....+++|+.|++.+|
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 999999998877777899999999999844322 2222 34567899999999875 344433 3456899999999999
Q ss_pred C
Q 039786 160 P 160 (210)
Q Consensus 160 ~ 160 (210)
+
T Consensus 190 ~ 190 (251)
T 3m19_A 190 Q 190 (251)
T ss_dssp C
T ss_pred c
Confidence 8
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=4.4e-15 Score=114.58 Aligned_cols=152 Identities=16% Similarity=0.073 Sum_probs=68.4
Q ss_pred hcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc---C--ChhhhcCCCccEEEEEeecCCCcchh---h
Q 039786 26 ANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK---L--PDWIFKLKNLIRLGLELSGLAEEPIR---V 96 (210)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~---~--p~~~~~l~~L~~L~l~~~~l~~~~~~---~ 96 (210)
..+++|++|++++|... ......+..++ +|++|++++ .+.. + +.+++.+++|++|++++|.++..+.. .
T Consensus 142 ~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSP-AFSCEQVRAFP-ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp TBCSCCCEEEEECCSSC-CCCTTSCCCCT-TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcc-hhhHHHhccCC-CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 34556666666554332 22223344444 566666655 3321 1 12234555666666666655432211 2
Q ss_pred hhcCCCccEEEecCccCCcceEecCCCC---CcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccc
Q 039786 97 LQASPNLLEILLTGTYDYELFHFEAGWF---PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLK 173 (210)
Q Consensus 97 l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~ 173 (210)
++.+++|++|+++++.-....+.....+ ++|+.|++.++. +..++.. .+++|+.|++++|. ++.+|. +..++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~--~~~~L~~L~Ls~N~-l~~~~~-~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG--LPAKLRVLDLSSNR-LNRAPQ-PDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC--CCSCCSCEECCSCC-CCSCCC-TTSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh--hcCCCCEEECCCCc-CCCCch-hhhCC
Confidence 3455666666665222111111111222 455666655443 2233221 13556666666555 444433 34555
Q ss_pred cccceeeecch
Q 039786 174 NLKLLKFAGMV 184 (210)
Q Consensus 174 ~L~~l~l~~~~ 184 (210)
+|++|++.+++
T Consensus 295 ~L~~L~L~~N~ 305 (310)
T 4glp_A 295 EVDNLTLDGNP 305 (310)
T ss_dssp CCSCEECSSTT
T ss_pred CccEEECcCCC
Confidence 66666655543
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.52 E-value=3.2e-14 Score=110.65 Aligned_cols=174 Identities=16% Similarity=0.124 Sum_probs=107.8
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRL 82 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L 82 (210)
++|++|++++ .......+..++++++|++|++++|... ......+..++ +|++|++.+ .++.+|..+. ++|++|
T Consensus 54 ~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLR-KLQKLYISKNHLVEIPPNLP--SSLVEL 128 (332)
T ss_dssp TTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCT-TCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred CCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcC-CCCEEECCCCcCCccCcccc--ccCCEE
Confidence 4677788775 2222222456778888888888875443 33234566666 788888877 6777775443 788888
Q ss_pred EEEeecCCCcchhhhhcCCCccEEEecCccCCc--ceEecC--------------------CCCCcccEEEecccCccee
Q 039786 83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYE--LFHFEA--------------------GWFPKLQKLLLWDFIAVKS 140 (210)
Q Consensus 83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~--------------------~~~~~L~~L~l~~~~~l~~ 140 (210)
++++|.+...+...++.+++|+.|+++++.... ...... ..+++|+.|++.++. +..
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~ 207 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQA 207 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCc
Confidence 888887776666667788888888887332110 000011 112456666665543 222
Q ss_pred eE-EccCCCCcccEEEeccCCCCCccc-ccccccccccceeeecch
Q 039786 141 VI-IEKGAVPDIRELRIGPCPLLMEIP-IGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 141 ~~-~~~~~~~~L~~L~i~~~~~l~~lp-~~l~~l~~L~~l~l~~~~ 184 (210)
.+ .....+++|+.|++.+|. ++.++ ..+..+++|++|++.++.
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc
Confidence 22 234457788888888887 44444 356788888888888864
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=112.73 Aligned_cols=99 Identities=20% Similarity=0.149 Sum_probs=62.9
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc--CChhhhcCCC
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK--LPDWIFKLKN 78 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--~p~~~~~l~~ 78 (210)
++++|++|++++ +......+..++++++|++|++++|... ..+ .. .++ +|++|++++ .++. +|..++.+++
T Consensus 43 ~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp--~~-~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 43 SLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLV-KIS--CH-PTV-NLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp TCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCC-EEE--CC-CCC-CCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred ccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCcee-ecC--cc-ccC-CccEEeccCCccccccchhhhccCCc
Confidence 567777777775 2333333566777778888888775443 222 11 445 788888877 6664 5677888888
Q ss_pred ccEEEEEeecCCCcchhhhhcCCCc--cEEEec
Q 039786 79 LIRLGLELSGLAEEPIRVLQASPNL--LEILLT 109 (210)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l~~l~~L--~~L~l~ 109 (210)
|++|++++|.++.. .++.+++| +.|+++
T Consensus 117 L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 117 LKFLGLSTTHLEKS---SVLPIAHLNISKVLLV 146 (520)
T ss_dssp CCEEEEEESSCCGG---GGGGGTTSCEEEEEEE
T ss_pred ceEEEecCcccchh---hccccccceeeEEEee
Confidence 88888888876552 23344444 555555
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.51 E-value=8.8e-14 Score=112.82 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=96.5
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
++++|++|++++ .....++ ++.+++|++|++++|..... + +..++ +|++|++.+ .++.+| ++.+++|+
T Consensus 62 ~l~~L~~L~Ls~--n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~-~L~~L~L~~N~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 62 KLTGLTKLICTS--NNITTLD--LSQNTNLTYLACDSNKLTNL-D---VTPLT-KLTYLNCDTNKLTKLD--VSQNPLLT 130 (457)
T ss_dssp GCTTCSEEECCS--SCCSCCC--CTTCTTCSEEECCSSCCSCC-C---CTTCT-TCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred ccCCCCEEEccC--CcCCeEc--cccCCCCCEEECcCCCCcee-e---cCCCC-cCCEEECCCCcCCeec--CCCCCcCC
Confidence 567888888876 2222222 67778888888887654332 2 45555 788888877 666665 66777777
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceE-------------------ecCCCCCcccEEEecccCcceee
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFH-------------------FEAGWFPKLQKLLLWDFIAVKSV 141 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~l~~~ 141 (210)
+|++++|.++..+ ++.+++|++|+++.+.....+. .....+++|+.|++.++. +..+
T Consensus 131 ~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~-l~~~ 206 (457)
T 3bz5_A 131 YLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN-ITKL 206 (457)
T ss_dssp EEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSC-CSCC
T ss_pred EEECCCCccceec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCc-CCee
Confidence 7777777765532 4556666666665331111110 012334455555554433 2222
Q ss_pred EEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 142 IIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 142 ~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
..+.+++|+.|++++|. ++.+| +..+++|++|++.++.
T Consensus 207 --~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 207 --DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp --CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred --ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCc
Confidence 24456777777777776 55566 6677788888877764
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=3.5e-16 Score=121.77 Aligned_cols=178 Identities=16% Similarity=0.123 Sum_probs=114.1
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCccE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNLIR 81 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L~~ 81 (210)
++++.|++++ .........+..+++|++|++++|......-...+..++ +|++|++.+ .++. .+..++.+++|++
T Consensus 70 ~~l~~L~l~~--n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPR--SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTT--CEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCC--ccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 4566666654 111112222456778888888876532211112344555 888888887 5553 5566777888888
Q ss_pred EEEEee-cCCCcch-hhhhcCCCccEEEecCc-cCCc-ceEecCCCCC-cccEEEecccC-cce--eeEEccCCCCcccE
Q 039786 82 LGLELS-GLAEEPI-RVLQASPNLLEILLTGT-YDYE-LFHFEAGWFP-KLQKLLLWDFI-AVK--SVIIEKGAVPDIRE 153 (210)
Q Consensus 82 L~l~~~-~l~~~~~-~~l~~l~~L~~L~l~~~-~~~~-~~~~~~~~~~-~L~~L~l~~~~-~l~--~~~~~~~~~~~L~~ 153 (210)
|++++| .++...+ ..+..+++|++|+++++ .... .+......++ +|+.|++.+|. .+. .++.....+++|++
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 888888 4665433 34678888888888855 2221 1222345577 89999998874 222 22223346889999
Q ss_pred EEeccCCCCC-cccccccccccccceeeecch
Q 039786 154 LRIGPCPLLM-EIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 154 L~i~~~~~l~-~lp~~l~~l~~L~~l~l~~~~ 184 (210)
|++.+|..++ ..+..+..+++|++|++.+|.
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 9999988443 556677888999999999885
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.50 E-value=1.8e-13 Score=113.70 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=88.8
Q ss_pred hcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC---hhhhcCCCccEEEEEeecCCC-cchhhhhcC
Q 039786 26 ANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP---DWIFKLKNLIRLGLELSGLAE-EPIRVLQAS 100 (210)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p---~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l 100 (210)
+.+++|++|++++|...... ...+..++ +|++|++.+ .++.++ ..++.+++|++|++++|.++. .+...+..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~-~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSV-FQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTT-TTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccch-hhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 34455555555554332211 12334444 566666655 444433 234555666666666665544 333344555
Q ss_pred CCccEEEecCccCCcceEecCCCC-CcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCccccc-ccccccccce
Q 039786 101 PNLLEILLTGTYDYELFHFEAGWF-PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLL 178 (210)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l 178 (210)
++|++|+++++..... ....+ ++|+.|++.++. +..++.....+++|++|++.+|. ++.+|.. +..+++|+.+
T Consensus 428 ~~L~~L~l~~n~l~~~---~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 428 ESILVLNLSSNMLTGS---VFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp TTCCEEECCSSCCCGG---GGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCE
T ss_pred ccCCEEECCCCCCCcc---hhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEE
Confidence 6666666653321111 11223 578888887763 55566555678899999999887 6788887 7888999999
Q ss_pred eeecch
Q 039786 179 KFAGMV 184 (210)
Q Consensus 179 ~l~~~~ 184 (210)
++.+++
T Consensus 503 ~l~~N~ 508 (562)
T 3a79_B 503 WLHDNP 508 (562)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 998854
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.50 E-value=1.4e-13 Score=116.60 Aligned_cols=177 Identities=21% Similarity=0.186 Sum_probs=103.0
Q ss_pred CCCCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCc---cCChhhhcC
Q 039786 2 KLRQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMK---KLPDWIFKL 76 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~---~~p~~~~~l 76 (210)
++++|++|++++ +.....++ ..++++++|+.|++++|.... .....+..++ +|+.|++.+ .+. .+|.++..+
T Consensus 403 ~l~~L~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 403 WLGHLEVLDLGL-NEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TCTTCCEEECCS-SCCEEECCSGGGTTCTTCCEEECCSCSEEE-CCTTTTTTCT-TCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred CCCCCCEEeCCC-CcCccccCcccccCcccccEEecCCCCcce-eChhhhhcCc-ccccchhccccccccccCCcccccC
Confidence 345555555553 22222222 345555666666666543221 1223344445 677777765 332 356677788
Q ss_pred CCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcc--------eEecCCCCCcccEEEecccCcceeeEEc-cCC
Q 039786 77 KNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYEL--------FHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGA 147 (210)
Q Consensus 77 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--------~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~ 147 (210)
++|+.|++++|.++..+...++++++|++|+++++.-... .......+++|+.|++.++. +..++.. .+.
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~ 558 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKD 558 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHccc
Confidence 8888888888887776666778888888888873321110 01113456777788777654 3344332 345
Q ss_pred CCcccEEEeccCCCCCcccccc-cccccccceeeecc
Q 039786 148 VPDIRELRIGPCPLLMEIPIGI-EHLKNLKLLKFAGM 183 (210)
Q Consensus 148 ~~~L~~L~i~~~~~l~~lp~~l-~~l~~L~~l~l~~~ 183 (210)
+++|+.|++++|. ++.+|.+. ..+++|++|+++++
T Consensus 559 l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 559 LFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC
Confidence 6777777777666 55565553 56677777777665
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=1.7e-13 Score=118.81 Aligned_cols=105 Identities=20% Similarity=0.126 Sum_probs=51.1
Q ss_pred CCCCCcEEEEEecCCCcchH-HHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CCh--hhhcC
Q 039786 2 KLRQLRKLSIRPQNGNGKDL-CGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPD--WIFKL 76 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~--~~~~l 76 (210)
++++|++|++++ +.....+ +.+++++++|++|++++|.... .....+..++ +|++|++.+ .++. +|. +++.+
T Consensus 46 ~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 46 FLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred ccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHccCCc-ccCEeeCcCCCCCcccccCcccccc
Confidence 566677777764 2122222 4556666677777776643322 2223344444 555555554 3332 222 24455
Q ss_pred CCccEEEEEeecCCCcch-hhhhcCCCccEEEec
Q 039786 77 KNLIRLGLELSGLAEEPI-RVLQASPNLLEILLT 109 (210)
Q Consensus 77 ~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~ 109 (210)
++|++|++++|.++...+ ..++++++|++|+++
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 555555555555443322 234455555555554
No 78
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.49 E-value=5.7e-14 Score=118.99 Aligned_cols=176 Identities=18% Similarity=0.102 Sum_probs=125.3
Q ss_pred CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccE
Q 039786 4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIR 81 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~ 81 (210)
+++++|++++ .......+..++++++|++|++++|.... .....+..++ +|++|++.+ .++.+|. .++.+++|++
T Consensus 25 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCS-SCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCC-CCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhccc-CcCEEECCCCccCccChhhhccCCCCCE
Confidence 4789999986 22233334568899999999999865433 3334456666 899999988 7888876 5888999999
Q ss_pred EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc---cCCCCcccEEEecc
Q 039786 82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE---KGAVPDIRELRIGP 158 (210)
Q Consensus 82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~L~~L~i~~ 158 (210)
|++++|.++..+...++++++|++|+++.+............+++|+.|++.++.. ...+.. ....++|+.|++.+
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCC
Confidence 99999998777667889999999999985433332333445688999999987652 222211 22458899999999
Q ss_pred CCCCCcccccccccccccceeeecc
Q 039786 159 CPLLMEIPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 159 ~~~l~~lp~~l~~l~~L~~l~l~~~ 183 (210)
|......|..+..+++|+.+++.++
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTC
T ss_pred CcccccChhhhhhhhhhhhhhcccc
Confidence 8743344555667777777766654
No 79
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=4.5e-14 Score=102.70 Aligned_cols=78 Identities=28% Similarity=0.339 Sum_probs=34.8
Q ss_pred CCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEE
Q 039786 30 NLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEIL 107 (210)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 107 (210)
+|++|+++++... ..+...+..++ +|++|++.+ .++.+|. .+..+++|++|++++|.++..+...++.+++|++|+
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccC-cCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4555555543322 11112233333 455555554 4444332 234455555555555554444333444555555555
Q ss_pred ec
Q 039786 108 LT 109 (210)
Q Consensus 108 l~ 109 (210)
++
T Consensus 107 L~ 108 (208)
T 2o6s_A 107 LN 108 (208)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.48 E-value=1.8e-13 Score=113.71 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=27.1
Q ss_pred CCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 146 GAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 146 ~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
+.+++|++|++.+|......|..+..+++|++|++.++.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 345677777777776444466677777888888887764
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.48 E-value=1.4e-13 Score=113.75 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=121.5
Q ss_pred CCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786 29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI 106 (210)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 106 (210)
++|++|++++|... ......+..++ +|++|++.+ .++.++ ..++.+++|++|++++|.++..+...++++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 78999999997643 33335577777 999999998 777754 678999999999999999988877789999999999
Q ss_pred EecCccCCc-ceEecCCCCCcccEEEecccCcceeeEE-ccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 107 LLTGTYDYE-LFHFEAGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 107 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
+++++.... ..+.....+++|+.|++.++.....++. ..+.+++|++|++.+|......|..+..+++|++|++.++.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 998443221 2233456789999999998875555542 45678999999999998555578888888899999888764
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=9.3e-13 Score=103.22 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=117.1
Q ss_pred CCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceE-EEeec-cCccC-ChhhhcCCCc
Q 039786 4 RQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQR-LYLTG-NMKKL-PDWIFKLKNL 79 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~-L~l~~-~~~~~-p~~~~~l~~L 79 (210)
+++++|++++ .....++ .+++++++|++|++++|...+..+...+..++ ++.+ +.+.+ .++.+ |..+..+++|
T Consensus 30 ~~l~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVL--TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEES--CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCEEEccC--CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhhhhcccCCcccccCchhhhhcccc
Confidence 5799999996 3334444 46899999999999997765655556677777 6665 45555 77776 4577889999
Q ss_pred cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCC-CcccEEEecccCcceeeEEccCCCCcccEEEec
Q 039786 80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWF-PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIG 157 (210)
Q Consensus 80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~ 157 (210)
++|++++|.+...+...+....++..+++..+.....+... .... ..++.|++.++. +..++.......+|+++.+.
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhc
Confidence 99999999987766555566677788887643322222211 1122 346667776543 44444433345667777777
Q ss_pred cCCCCCccccc-ccccccccceeeecch
Q 039786 158 PCPLLMEIPIG-IEHLKNLKLLKFAGMV 184 (210)
Q Consensus 158 ~~~~l~~lp~~-l~~l~~L~~l~l~~~~ 184 (210)
++..++.+|.. +..+++|++|+++++.
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred cCCcccCCCHHHhccCcccchhhcCCCC
Confidence 66667777654 3667777777777653
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=2.4e-13 Score=103.92 Aligned_cols=145 Identities=21% Similarity=0.189 Sum_probs=112.3
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
.+++|++|++++ .....+.. ++++++|+.|++++|.... +..+..++ +|++|++.+ .++.++ .+..+++|+
T Consensus 66 ~l~~L~~L~L~~--n~l~~~~~-l~~l~~L~~L~l~~n~l~~---~~~l~~l~-~L~~L~L~~n~i~~~~-~l~~l~~L~ 137 (291)
T 1h6t_A 66 YLPNVTKLFLNG--NKLTDIKP-LANLKNLGWLFLDENKVKD---LSSLKDLK-KLKSLSLEHNGISDIN-GLVHLPQLE 137 (291)
T ss_dssp GCTTCCEEECCS--SCCCCCGG-GTTCTTCCEEECCSSCCCC---GGGGTTCT-TCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred cCCCCCEEEccC--CccCCCcc-cccCCCCCEEECCCCcCCC---ChhhccCC-CCCEEECCCCcCCCCh-hhcCCCCCC
Confidence 578999999996 22233333 8999999999999875533 33466777 999999998 777775 678899999
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
.|++++|.++.. ..++.+++|+.|+++++.... +. ....+++|+.|++.++. +..++ ....+++|+.|++.+|+
T Consensus 138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L~~N~-i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEEEE
T ss_pred EEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-ch-hhcCCCccCEEECCCCc-CCCCh-hhccCCCCCEEECcCCc
Confidence 999999998774 678899999999998443222 21 25678999999999875 44443 35678999999999987
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=1.3e-14 Score=115.13 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=58.1
Q ss_pred CceEEEeec-cCc--cCC---hhhhcCCCccEEEEEeecCCCcc----hh-hhhcCCCccEEEecCccCC----cceEec
Q 039786 56 YLQRLYLTG-NMK--KLP---DWIFKLKNLIRLGLELSGLAEEP----IR-VLQASPNLLEILLTGTYDY----ELFHFE 120 (210)
Q Consensus 56 ~L~~L~l~~-~~~--~~p---~~~~~l~~L~~L~l~~~~l~~~~----~~-~l~~l~~L~~L~l~~~~~~----~~~~~~ 120 (210)
+|++|++.+ .++ .+| ..+..+++|++|++++|.++... .. .+..+++|++|+++.+... ..++..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 455555554 333 122 23344555555555555544321 11 3445555555555532211 111222
Q ss_pred CCCCCcccEEEecccCccee----eEEcc--CCCCcccEEEeccCCCCCc-----ccccc-cccccccceeeecc
Q 039786 121 AGWFPKLQKLLLWDFIAVKS----VIIEK--GAVPDIRELRIGPCPLLME-----IPIGI-EHLKNLKLLKFAGM 183 (210)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~----~~~~~--~~~~~L~~L~i~~~~~l~~-----lp~~l-~~l~~L~~l~l~~~ 183 (210)
...+++|+.|++.+|..... ++... +.+++|++|++++|. ++. +|..+ .++++|++|++.+|
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 23445566666655442111 01111 235666666666665 332 55555 44566666666654
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=3.2e-13 Score=112.87 Aligned_cols=145 Identities=21% Similarity=0.191 Sum_probs=113.2
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
.|++|+.|++++ .....+++ ++.+++|+.|++++|.... +..+..++ +|++|++.+ .++.++ .+..+++|+
T Consensus 63 ~l~~L~~L~Ls~--N~l~~~~~-l~~l~~L~~L~Ls~N~l~~---l~~l~~l~-~L~~L~Ls~N~l~~l~-~l~~l~~L~ 134 (605)
T 1m9s_A 63 YLPNVTKLFLNG--NKLTDIKP-LTNLKNLGWLFLDENKIKD---LSSLKDLK-KLKSLSLEHNGISDIN-GLVHLPQLE 134 (605)
T ss_dssp GCTTCCEEECTT--SCCCCCGG-GGGCTTCCEEECCSSCCCC---CTTSTTCT-TCCEEECTTSCCCCCG-GGGGCTTCS
T ss_pred cCCCCCEEEeeC--CCCCCChh-hccCCCCCEEECcCCCCCC---ChhhccCC-CCCEEEecCCCCCCCc-cccCCCccC
Confidence 578999999986 22233333 8999999999999975543 23567777 999999998 777775 588999999
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
.|+|++|.++.. ..++.+++|+.|+|+++......+ ...+++|+.|++.++. +..+ .....+++|+.|++.+|+
T Consensus 135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-i~~l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCBC-GGGTTCTTCSEEECCSEE
T ss_pred EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC-CCCC-hHHccCCCCCEEEccCCc
Confidence 999999998774 678899999999998543332222 6678999999999875 4444 345679999999999987
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=6.8e-15 Score=116.77 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=17.7
Q ss_pred CCCcccEEEeccCCCCCc-----cccccc--ccccccceeeecch
Q 039786 147 AVPDIRELRIGPCPLLME-----IPIGIE--HLKNLKLLKFAGMV 184 (210)
Q Consensus 147 ~~~~L~~L~i~~~~~l~~-----lp~~l~--~l~~L~~l~l~~~~ 184 (210)
.+++|++|++++|. ++. ++..+. .+++|++|++++|.
T Consensus 242 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 242 SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 44555555555555 221 233332 25555555555543
No 87
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=1.4e-13 Score=96.65 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=60.7
Q ss_pred CCCceEEEEecCcc-cccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786 29 KNLESLTVEMTSKE-EILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI 106 (210)
Q Consensus 29 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 106 (210)
++|+.|++++|... ...+ ..+..++ +|++|++.+ .++.+ ..+..+++|++|++++|.++......+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~-~~~~~l~-~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIE-GLTAEFV-NLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCS-SCCGGGG-GCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHH-HHHHhCC-CCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45555555554432 1111 1123333 555555555 44444 344555555555555555544333344445555555
Q ss_pred EecCccCCcceEecCCCCCcccEEEecccCcceeeE--EccCCCCcccEEEeccCCCCCcccc----cccccccccceee
Q 039786 107 LLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVI--IEKGAVPDIRELRIGPCPLLMEIPI----GIEHLKNLKLLKF 180 (210)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~i~~~~~l~~lp~----~l~~l~~L~~l~l 180 (210)
+++ ++. +..++ .....+++|++|++.+|. ++.+|. .+..+++|++|++
T Consensus 101 ~Ls------------------------~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 101 NLS------------------------GNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp ECB------------------------SSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETT
T ss_pred ecc------------------------CCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecC
Confidence 554 332 11111 122345556666666555 444443 4455666666666
Q ss_pred ecch
Q 039786 181 AGMV 184 (210)
Q Consensus 181 ~~~~ 184 (210)
.++.
T Consensus 155 ~~n~ 158 (168)
T 2ell_A 155 YDRE 158 (168)
T ss_dssp EETT
T ss_pred CCCC
Confidence 5553
No 88
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=1.9e-13 Score=114.38 Aligned_cols=129 Identities=16% Similarity=0.022 Sum_probs=75.0
Q ss_pred CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEE
Q 039786 5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRL 82 (210)
Q Consensus 5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L 82 (210)
++++|++++ +....-.+.+|+++++|++|++++|.. ...+..+|..++ +|++|+|++ .++.+|. ++..+++|++|
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 567777764 222222234567777777777776533 333334456665 677777776 6666553 55667777777
Q ss_pred EEEeecCCCcchhhhhcCCCccEEEecCc-cCCcceEecCCCCCcccEEEecccC
Q 039786 83 GLELSGLAEEPIRVLQASPNLLEILLTGT-YDYELFHFEAGWFPKLQKLLLWDFI 136 (210)
Q Consensus 83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 136 (210)
++++|.++..+...++++++|++|+++.+ ......+.....+++|+.|++.++.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 77777766655555667777777777632 2221122223445667777766543
No 89
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=5.3e-13 Score=97.97 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=55.9
Q ss_pred CceEEEeec-cCccCC--hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEe
Q 039786 56 YLQRLYLTG-NMKKLP--DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLL 132 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p--~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 132 (210)
.+++|++.+ .++.++ ..+..+++|++|++++|.++..+...++.+++|++|+++++............+++|+.|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 344555544 444431 12444555555555555544444444455555555555422211111111233445555555
Q ss_pred cccCcceee-EEccCCCCcccEEEeccCCCCCcc-cccccccccccceeeecc
Q 039786 133 WDFIAVKSV-IIEKGAVPDIRELRIGPCPLLMEI-PIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 133 ~~~~~l~~~-~~~~~~~~~L~~L~i~~~~~l~~l-p~~l~~l~~L~~l~l~~~ 183 (210)
.++.. ..+ +.....+++|++|++.+|. ++.+ |..+..+++|++|++.++
T Consensus 113 s~N~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 113 RSNRI-TCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTSCC-CCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCcC-CeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCc
Confidence 54332 211 1222344555555555555 3333 444555555555555553
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.39 E-value=4.3e-13 Score=112.31 Aligned_cols=181 Identities=13% Similarity=0.022 Sum_probs=113.3
Q ss_pred CCCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecC-----------------------cccccccccccCCccCc
Q 039786 2 KLRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTS-----------------------KEEILDLLSLSSPPQYL 57 (210)
Q Consensus 2 ~L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~-----------------------~~~~~~~~~~~~~~~~L 57 (210)
++++|+.|+++. ........+.....+.+|+.+++..+. .....+...+..+. ++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~-~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT-TC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc-cc
Confidence 466777777765 111122223344455556665555432 22222223334444 66
Q ss_pred eEEEeec-cCcc-CChhhhcCCCccEEEEEeec-CCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786 58 QRLYLTG-NMKK-LPDWIFKLKNLIRLGLELSG-LAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD 134 (210)
Q Consensus 58 ~~L~l~~-~~~~-~p~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 134 (210)
+.+++.. .+.. .+..+..++.|+.|++++|. .....+..+..+++|++|+++++.-....+.....+++|+.|++.+
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 7777766 4444 34456778889999998886 3334456778899999999985533322233456778999999987
Q ss_pred cCcceeeE-EccCCCCcccEEEeccCCCCCccccccccc-ccccceeeecch
Q 039786 135 FIAVKSVI-IEKGAVPDIRELRIGPCPLLMEIPIGIEHL-KNLKLLKFAGMV 184 (210)
Q Consensus 135 ~~~l~~~~-~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l-~~L~~l~l~~~~ 184 (210)
+. +..++ ...+.+++|+.|++++|......|..+..+ ++|++|++.+++
T Consensus 528 N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 528 NN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp SC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred Cc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 64 44443 334568899999999998444456667777 689999998743
No 91
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=5.6e-13 Score=93.61 Aligned_cols=104 Identities=24% Similarity=0.231 Sum_probs=83.2
Q ss_pred CCCCcEEEEEecCCCc-chHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCc
Q 039786 3 LRQLRKLSIRPQNGNG-KDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNL 79 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L 79 (210)
.++|++|++++ .... ..++..++.+++|+.|++++|..... ..+..++ +|++|++.+ .++. +|..+..+++|
T Consensus 23 ~~~L~~L~l~~-n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDN-CKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCS-CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cccCCEEECCC-CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCC
Confidence 57899999996 2222 36667778899999999999765433 5567777 999999998 7777 88788889999
Q ss_pred cEEEEEeecCCCcc-hhhhhcCCCccEEEecCc
Q 039786 80 IRLGLELSGLAEEP-IRVLQASPNLLEILLTGT 111 (210)
Q Consensus 80 ~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~ 111 (210)
++|++++|.++..+ +..++.+++|++|+++.+
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 99999999987754 367888999999998744
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=95.50 Aligned_cols=148 Identities=9% Similarity=0.057 Sum_probs=108.3
Q ss_pred cEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEEEE
Q 039786 7 RKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRLGL 84 (210)
Q Consensus 7 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l 84 (210)
+.+++++ .....++..+. ..++.|++++|......+...+..++ +|++|++.+ .++.++. .+..+++|++|++
T Consensus 14 ~~l~~s~--n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSN--QKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCS--SCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCC--CCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 4566664 22333444332 46789999997654443334466777 999999998 7887654 7899999999999
Q ss_pred EeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceee-EEccCCCCcccEEEeccCC
Q 039786 85 ELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 85 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~~~ 160 (210)
++|.++..+...++.+++|++|+++++......+.....+++|+.|++.++. +..+ +.....+++|+.|++.+|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 9999988877889999999999998443332223345667899999999865 3333 3345678999999999998
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=8.5e-13 Score=99.49 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=90.9
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~ 80 (210)
++++|++|++++ .....++ .++.+++|+.|++++|......+ +..++ +|++|++++ .++.+|.... ++|+
T Consensus 39 ~l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~-~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 39 ELSGVQNFNGDN--SNIQSLA-GMQFFTNLKELHLSHNQISDLSP---LKDLT-KLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp HHTTCSEEECTT--SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCS-SCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred hcCcCcEEECcC--CCcccch-HHhhCCCCCEEECCCCccCCChh---hccCC-CCCEEECCCCccCCcCcccc--Cccc
Confidence 356778888775 2222222 56777888888887764433222 55565 788888877 6666664333 7888
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
+|++++|.++.. ..++.+++|+.|+++++.... +. ....+++|+.|++.++. +..+ .....+++|+.|++.+|+
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEEE
T ss_pred EEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCCc
Confidence 888888877663 457778888888887332211 21 34556778888877664 3333 334567778888887776
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=3.2e-12 Score=104.47 Aligned_cols=175 Identities=14% Similarity=0.019 Sum_probs=125.7
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh----------
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD---------- 71 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~---------- 71 (210)
+++|++|++++ +......+..++.+++|++|++++|......+ +..++ +|++|++++ .++.+|.
T Consensus 33 ~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~-~L~~L~Ls~N~l~~l~~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLS-TLRTLDLNNNYVQELLVGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCT-TCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred CCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCC-CCCEEEecCCcCCCCCCCCCcCEEECc
Confidence 45899999996 33333345788999999999999876544333 45555 677777765 4433221
Q ss_pred -------hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecC-CCCCcccEEEecccCcceeeEE
Q 039786 72 -------WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEA-GWFPKLQKLLLWDFIAVKSVII 143 (210)
Q Consensus 72 -------~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~ 143 (210)
....+++|+.|++++|.++......++.+++|++|+++++......+... ..+++|+.|++.++. +..++
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~- 185 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK- 185 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE-
T ss_pred CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccc-
Confidence 01346788999999988887766778889999999998443222222222 257899999999876 44443
Q ss_pred ccCCCCcccEEEeccCCCCCcccccccccccccceeeecchH
Q 039786 144 EKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 144 ~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~ 185 (210)
....+++|+.|++++|. ++.+|..+..+++|+.|+++++..
T Consensus 186 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC
T ss_pred ccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC
Confidence 33458999999999998 778888899999999999999753
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=8.1e-13 Score=96.98 Aligned_cols=124 Identities=18% Similarity=0.156 Sum_probs=52.3
Q ss_pred CceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCCCcccEEEe
Q 039786 56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWFPKLQKLLL 132 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l 132 (210)
++++|++.+ .++.++. .+..+++|+.|++++|.++......+.++++|++|+++++... .++.. ...+++|+.|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEEC
Confidence 445555544 4444332 3444445555555555444443444445555555555422111 11111 123444555554
Q ss_pred cccCcceee-EEccCCCCcccEEEeccCCCCCcccc-cccccccccceeeec
Q 039786 133 WDFIAVKSV-IIEKGAVPDIRELRIGPCPLLMEIPI-GIEHLKNLKLLKFAG 182 (210)
Q Consensus 133 ~~~~~l~~~-~~~~~~~~~L~~L~i~~~~~l~~lp~-~l~~l~~L~~l~l~~ 182 (210)
.++. +..+ +.....+++|+.|++.+|. ++.++. .+..+++|++|++.+
T Consensus 112 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 112 NANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence 4432 1211 1122334555555555554 333332 244455555555554
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=1.6e-12 Score=96.01 Aligned_cols=127 Identities=21% Similarity=0.187 Sum_probs=77.5
Q ss_pred CceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786 56 YLQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW 133 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 133 (210)
+|++|++.+ .++.+ |..+..+++|++|++++|.+...+...++.+++|++|+++++............+++|+.|++.
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 677777766 56654 4456667777777777777666555556677777777776332221111113456677777776
Q ss_pred ccCcceeeEEccCCCCcccEEEeccCCCCCcccc-cccccccccceeeecch
Q 039786 134 DFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPI-GIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 134 ~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~-~l~~l~~L~~l~l~~~~ 184 (210)
++. +..++.....+++|++|++.+|. ++.+|. .+..+++|+.|++.+++
T Consensus 121 ~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 121 CNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 554 34444444566777777777776 555553 35667777777777643
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1.6e-12 Score=98.01 Aligned_cols=147 Identities=15% Similarity=0.187 Sum_probs=113.3
Q ss_pred HhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCC
Q 039786 24 LIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPN 102 (210)
Q Consensus 24 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 102 (210)
.++.+++|+.|++++|.... +..+..++ +|++|++.+ .++.++. +..+++|++|++++|.++..+ .+.. ++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~---l~~l~~l~-~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~--~~~~-~~ 107 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS---LAGMQFFT-NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLN--GIPS-AC 107 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC---CTTGGGCT-TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCT--TCCC-SS
T ss_pred chhhcCcCcEEECcCCCccc---chHHhhCC-CCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcC--cccc-Cc
Confidence 46788999999999865433 23566666 899999998 8888876 889999999999999987743 3334 99
Q ss_pred ccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeec
Q 039786 103 LLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAG 182 (210)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~ 182 (210)
|+.|+++++.... + .....+++|+.|++.++. +..++ ..+.+++|+.|++++|. ++.+ ..+..+++|+.|++.+
T Consensus 108 L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCC-C-hhhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCC
Confidence 9999998443222 2 245678999999999875 44443 45678999999999998 5555 5678899999999998
Q ss_pred ch
Q 039786 183 MV 184 (210)
Q Consensus 183 ~~ 184 (210)
++
T Consensus 182 N~ 183 (263)
T 1xeu_A 182 QK 183 (263)
T ss_dssp EE
T ss_pred Cc
Confidence 65
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=1.9e-12 Score=95.06 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=99.8
Q ss_pred CCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786 29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI 106 (210)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 106 (210)
++++.|+++++... ..+...+..++ +|++|++.+ .++.+ |..+..+++|++|++++|.++..+...+.++++|++|
T Consensus 32 ~~l~~L~l~~n~i~-~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-VIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCC-EECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCC-CcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 68999999986543 33344577777 999999998 78775 7788999999999999999988777778999999999
Q ss_pred EecCccCCcceEecCCCCCcccEEEecccCcceeeEE-ccCCCCcccEEEeccCC
Q 039786 107 LLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCP 160 (210)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~ 160 (210)
+++++............+++|+.|++.++. +..++. ....+++|+.|++.+|+
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 998443322222344567899999999875 344433 24568899999999998
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=1.5e-13 Score=94.67 Aligned_cols=123 Identities=18% Similarity=0.119 Sum_probs=70.4
Q ss_pred CceEEEeec-cCc--cCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEe
Q 039786 56 YLQRLYLTG-NMK--KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLL 132 (210)
Q Consensus 56 ~L~~L~l~~-~~~--~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 132 (210)
+|++|++.+ .++ .+|..+..+++|++|++++|.++.. ..++.+++|++|+++++.....++.....+++|+.|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 566666655 444 4555555566666666666655443 44555666666666533222112222223556666666
Q ss_pred cccCcceeeE--EccCCCCcccEEEeccCCCCCcccc----cccccccccceeeec
Q 039786 133 WDFIAVKSVI--IEKGAVPDIRELRIGPCPLLMEIPI----GIEHLKNLKLLKFAG 182 (210)
Q Consensus 133 ~~~~~l~~~~--~~~~~~~~L~~L~i~~~~~l~~lp~----~l~~l~~L~~l~l~~ 182 (210)
.++. +..++ ...+.+++|++|++.+|. ++.+|. .+..+++|++|++++
T Consensus 96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 6544 22221 234567888889998887 555554 567888888888753
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=4.6e-13 Score=103.55 Aligned_cols=176 Identities=14% Similarity=0.018 Sum_probs=126.7
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh--------
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-------- 72 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-------- 72 (210)
.+++|++|++++ .......+..++++++|++|++++|......+ +..++ +|++|++.+ .++.++..
T Consensus 32 ~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~-~L~~L~Ls~n~l~~l~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLS-TLRTLDLNNNYVQELLVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCT-TCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred cCCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcC-CCCEEECcCCccccccCCCCcCEEEC
Confidence 356899999986 33334446788999999999999876544332 55666 788888876 54443210
Q ss_pred ---------hhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecC-CCCCcccEEEecccCcceeeE
Q 039786 73 ---------IFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEA-GWFPKLQKLLLWDFIAVKSVI 142 (210)
Q Consensus 73 ---------~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~ 142 (210)
...+++|++|++++|.++..+...++.+++|++|+++++.......... ..+++|+.|++.++. +..++
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 185 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK 185 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccc
Confidence 1346778888888888877666677889999999998443222111111 356899999999876 44443
Q ss_pred EccCCCCcccEEEeccCCCCCcccccccccccccceeeecchH
Q 039786 143 IEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 143 ~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~ 185 (210)
....+++|++|++++|. ++.+|..+..+++|++|+++++..
T Consensus 186 -~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 186 -GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp -CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC
T ss_pred -cccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcc
Confidence 33358999999999998 778888889999999999999854
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=2.1e-12 Score=101.66 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=109.8
Q ss_pred CCCceEEEEecCccccccccccc-CCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccE
Q 039786 29 KNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLE 105 (210)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 105 (210)
..++.|++++|... ......+. .++ +|++|++.+ .++.++ ..+..+++|++|++++|.++..+...+..+++|+.
T Consensus 39 ~~l~~L~Ls~N~l~-~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLS-RLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCC-EECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCC-ccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 46889999986543 33334444 566 899999988 788765 46788999999999999988877777889999999
Q ss_pred EEecCccCCcceEecCCCCCcccEEEecccCcceeeEEcc----CCCCcccEEEeccCCCCCcccc-ccccccc--ccce
Q 039786 106 ILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEK----GAVPDIRELRIGPCPLLMEIPI-GIEHLKN--LKLL 178 (210)
Q Consensus 106 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~L~~L~i~~~~~l~~lp~-~l~~l~~--L~~l 178 (210)
|+++++............+++|+.|++.++. +..++... ..+++|+.|++++|. ++.+|. .+..++. ++.|
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTE
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceE
Confidence 9998443222122234567899999998764 44444332 458999999999988 666664 4566766 4889
Q ss_pred eeecch
Q 039786 179 KFAGMV 184 (210)
Q Consensus 179 ~l~~~~ 184 (210)
++.+++
T Consensus 195 ~l~~N~ 200 (361)
T 2xot_A 195 YLHNNP 200 (361)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 998854
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.34 E-value=1.1e-11 Score=97.17 Aligned_cols=177 Identities=16% Similarity=0.143 Sum_probs=95.6
Q ss_pred CCCCCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCC
Q 039786 1 MKLRQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLK 77 (210)
Q Consensus 1 ~~L~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~ 77 (210)
++|++|++|++++ +.....++ .++.++++++.+.+..++.....+...+..++ +|++|++.+ .+..+|. ......
T Consensus 51 ~~l~~L~~L~Ls~-N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~ 128 (350)
T 4ay9_X 51 SGFGDLEKIEISQ-NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSL 128 (350)
T ss_dssp TTCTTCCEEEEEC-CTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT-TCCEEEEEEECCSSCCCCTTCCBS
T ss_pred cCCCCCCEEECcC-CCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcc-ccccccccccccccCCchhhcccc
Confidence 3688999999996 22222222 34677777776555544554554445566666 788888877 6665543 222333
Q ss_pred CccEEEEEeec-CCCcchhhhhcC-CCccEEEec-----------------------CccCCcceEec-CCCCCcccEEE
Q 039786 78 NLIRLGLELSG-LAEEPIRVLQAS-PNLLEILLT-----------------------GTYDYELFHFE-AGWFPKLQKLL 131 (210)
Q Consensus 78 ~L~~L~l~~~~-l~~~~~~~l~~l-~~L~~L~l~-----------------------~~~~~~~~~~~-~~~~~~L~~L~ 131 (210)
++..|++.++. +...+...+..+ ..++.|+++ ++.....++.. ...+++|+.|+
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 44455554432 333332233332 234444443 22222222211 23445666666
Q ss_pred ecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786 132 LWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 132 l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~ 183 (210)
++++. +..++ .+.+.+|+.|.+.++..++.+|. +..+++|+.+++.+.
T Consensus 209 Ls~N~-l~~lp--~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 209 ISRTR-IHSLP--SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CTTSC-CCCCC--SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred cCCCC-cCccC--hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 66543 34333 23466677777766666667763 566777777777653
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=8.2e-12 Score=103.58 Aligned_cols=135 Identities=16% Similarity=0.067 Sum_probs=82.5
Q ss_pred CCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786 28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI 106 (210)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 106 (210)
+++|++|++++|.... .+ .+ +.+|++|++.+ .++.+|. .+++|+.|++++|.++..+. .+++|++|
T Consensus 99 l~~L~~L~Ls~N~l~~-ip--~l---~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L 165 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LP--EL---PASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVL 165 (571)
T ss_dssp CTTCCEEECCSSCCSC-CC--CC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred cCCCCEEEccCCCCCC-cc--hh---hcCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEE
Confidence 4555555555543322 11 11 11566666666 5555664 45677777777776655332 46777777
Q ss_pred EecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcc-------cEEEeccCCCCCccccccccccccccee
Q 039786 107 LLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDI-------RELRIGPCPLLMEIPIGIEHLKNLKLLK 179 (210)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L-------~~L~i~~~~~l~~lp~~l~~l~~L~~l~ 179 (210)
+++++.... ++. .. ++|+.|++.++. +..++. .. .+| +.|++++|. ++.+|..+..+++|+.|+
T Consensus 166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~-L~~lp~-~~--~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 166 SVRNNQLTF-LPE-LP--ESLEALDVSTNL-LESLPA-VP--VRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTII 236 (571)
T ss_dssp ECCSSCCSC-CCC-CC--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEE
T ss_pred ECCCCCCCC-cch-hh--CCCCEEECcCCC-CCchhh-HH--HhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEE
Confidence 776332221 222 11 678888887764 344443 22 266 999999987 778999998899999999
Q ss_pred eecch
Q 039786 180 FAGMV 184 (210)
Q Consensus 180 l~~~~ 184 (210)
+.+++
T Consensus 237 L~~N~ 241 (571)
T 3cvr_A 237 LEDNP 241 (571)
T ss_dssp CCSSS
T ss_pred eeCCc
Confidence 99975
No 104
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.32 E-value=4.2e-14 Score=114.48 Aligned_cols=177 Identities=18% Similarity=0.200 Sum_probs=108.7
Q ss_pred CCCCcEEEEEecCCCcc----hHHHHhhcCCCCceEEEEecCccccccc----ccc-cCCccCceEEEeec-cCcc----
Q 039786 3 LRQLRKLSIRPQNGNGK----DLCGLIANLKNLESLTVEMTSKEEILDL----LSL-SSPPQYLQRLYLTG-NMKK---- 68 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~-~~~~~~L~~L~l~~-~~~~---- 68 (210)
+++|++|++++ ..... .++..++.+++|++|++++|.... ... ..+ ..++ +|++|++.+ .++.
T Consensus 198 ~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~ 274 (461)
T 1z7x_W 198 PCQLEALKLES-CGVTSDNCRDLCGIVASKASLRELALGSNKLGD-VGMAELCPGLLHPSS-RLRTLWIWECGITAKGCG 274 (461)
T ss_dssp CCCCCEEECTT-SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHH
T ss_pred CCCceEEEccC-CCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh-HHHHHHHHHHhcCCC-CceEEECcCCCCCHHHHH
Confidence 34677777764 11111 256666777777788777754321 111 111 1244 788888877 5554
Q ss_pred -CChhhhcCCCccEEEEEeecCCCcchhhhhc-----CCCccEEEecCccCCcc----eEecCCCCCcccEEEecccCcc
Q 039786 69 -LPDWIFKLKNLIRLGLELSGLAEEPIRVLQA-----SPNLLEILLTGTYDYEL----FHFEAGWFPKLQKLLLWDFIAV 138 (210)
Q Consensus 69 -~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l 138 (210)
++..+..+++|++|++++|.+.......+.. .++|++|+++++..... +......+++|+.|++.++. +
T Consensus 275 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i 353 (461)
T 1z7x_W 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-L 353 (461)
T ss_dssp HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-C
T ss_pred HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-c
Confidence 4556667788888888888776554444443 26888888874432211 11122345788888888764 2
Q ss_pred eeeE-Ec----c-CCCCcccEEEeccCCCCC-----cccccccccccccceeeecch
Q 039786 139 KSVI-IE----K-GAVPDIRELRIGPCPLLM-----EIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 139 ~~~~-~~----~-~~~~~L~~L~i~~~~~l~-----~lp~~l~~l~~L~~l~l~~~~ 184 (210)
.... .. . ...++|++|++.+|. ++ .+|..+..+++|++|+++++.
T Consensus 354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 354 EDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2211 10 1 125789999999997 54 677788889999999999875
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.31 E-value=1e-11 Score=104.07 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=43.6
Q ss_pred CCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 122 GWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
..+++|+.|++.++. +..++. .+++|+.|++.+|. ++.+|..+..+++|+.|++.+++
T Consensus 238 ~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 345667777776653 333332 56789999999887 67889999999999999999975
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=3.8e-13 Score=92.59 Aligned_cols=101 Identities=23% Similarity=0.241 Sum_probs=47.5
Q ss_pred CCCcEEEEEecCCCc-chHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCcc
Q 039786 4 RQLRKLSIRPQNGNG-KDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNLI 80 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L~ 80 (210)
++|+.|++++ .... ..++..++.+++|+.|++++|..... ..+..++ +|++|++++ .++. +|..++.+++|+
T Consensus 17 ~~l~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDN-SRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTT-CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccC-CcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4455555553 1111 23344445555555555555432221 2333444 555555555 4444 444444455555
Q ss_pred EEEEEeecCCCcc-hhhhhcCCCccEEEec
Q 039786 81 RLGLELSGLAEEP-IRVLQASPNLLEILLT 109 (210)
Q Consensus 81 ~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~ 109 (210)
+|++++|.++..+ +..++.+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 5555555554422 2444555555555554
No 107
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=1.6e-12 Score=92.08 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=79.0
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecC-CCCCcccEEEec
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEA-GWFPKLQKLLLW 133 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~ 133 (210)
+|++|++.+ .++.+|......++|++|++++|.++.. ..++.+++|++|+++++.-. .++... ..+++|+.|++.
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILT 96 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECC
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECC
Confidence 566666666 5555554333334677777766666543 45566666777766633211 122111 345667777766
Q ss_pred ccCcceeeEE--ccCCCCcccEEEeccCCCCCccccc----ccccccccceeeecchHHH
Q 039786 134 DFIAVKSVII--EKGAVPDIRELRIGPCPLLMEIPIG----IEHLKNLKLLKFAGMVKQV 187 (210)
Q Consensus 134 ~~~~l~~~~~--~~~~~~~L~~L~i~~~~~l~~lp~~----l~~l~~L~~l~l~~~~~~~ 187 (210)
++. +..++. ....+++|+.|++.+|+ +..+|.. +..+++|+.|++.++..+-
T Consensus 97 ~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 97 NNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp SCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 553 233332 34468889999999998 5667765 7889999999999987643
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=9.2e-12 Score=90.39 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=98.7
Q ss_pred CceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786 56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW 133 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 133 (210)
+|++|++.+ .++.++. .+..+++|++|++++|.++..+...++.+++|++|+++++............+++|+.|++.
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 899999998 7887665 56889999999999999887776678899999999998443222112223567899999998
Q ss_pred ccCcceeeEEc-cCCCCcccEEEeccCCCCCccccc-ccccccccceeeecch
Q 039786 134 DFIAVKSVIIE-KGAVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGMV 184 (210)
Q Consensus 134 ~~~~l~~~~~~-~~~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~~ 184 (210)
++. +..++.. ...+++|++|++.+|. ++.+|.. +..+++|++|++.+++
T Consensus 109 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 109 TNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 764 4444433 3568999999999997 6666665 6889999999999863
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=4.7e-12 Score=93.46 Aligned_cols=128 Identities=20% Similarity=0.142 Sum_probs=96.6
Q ss_pred CCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786 29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI 106 (210)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 106 (210)
++|+.|++++|.... .....+..++ +|++|++.+ .++.+|. .+..+++|++|++++|.++..+...++.+++|++|
T Consensus 40 ~~L~~L~Ls~n~i~~-~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITK-LEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCc-cCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 789999999865543 3234566676 899999988 7887764 46889999999999999888776778899999999
Q ss_pred EecCccCCcceEecCCCCCcccEEEecccCcceeeEE-ccCCCCcccEEEeccCC
Q 039786 107 LLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCP 160 (210)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~ 160 (210)
+++++.. ..++.....+++|+.|++.++. +..++. ....+++|+.|++.+|+
T Consensus 118 ~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCNKL-TELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSSCC-CSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eccCCcc-cccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 9984322 2344445677899999998764 444443 24568899999999988
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=5.7e-13 Score=104.86 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=19.2
Q ss_pred CcccEEEeccCCCCCccc-----ccccccccccceeeecch
Q 039786 149 PDIRELRIGPCPLLMEIP-----IGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 149 ~~L~~L~i~~~~~l~~lp-----~~l~~l~~L~~l~l~~~~ 184 (210)
++|++|++++|. ++..+ ..+..+++|++|++++|.
T Consensus 225 ~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 225 NHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 356666666665 33221 122455667777776664
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.25 E-value=2.3e-13 Score=110.11 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=95.5
Q ss_pred CCCCcEEEEEecCCCc----chHHHHhhcCCCCceEEEEecCcccccccc----cccCCccCceEEEeec-cCc-----c
Q 039786 3 LRQLRKLSIRPQNGNG----KDLCGLIANLKNLESLTVEMTSKEEILDLL----SLSSPPQYLQRLYLTG-NMK-----K 68 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~-~~~-----~ 68 (210)
+++|++|++++ .... ..++..+..+++|++|++++|.... .... .+.....+|++|++.+ .++ .
T Consensus 27 ~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDD-CGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HTTCSEEEEES-SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH-HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCccEEEccC-CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh-HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 46777777775 1111 1445666677777777777654322 1111 1111111577777776 444 2
Q ss_pred CChhhhcCCCccEEEEEeecCCCcchhhhhc-----CCCccEEEecCccCCcc----eEecCCCCCcccEEEecccCcce
Q 039786 69 LPDWIFKLKNLIRLGLELSGLAEEPIRVLQA-----SPNLLEILLTGTYDYEL----FHFEAGWFPKLQKLLLWDFIAVK 139 (210)
Q Consensus 69 ~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~ 139 (210)
++..+..+++|++|++++|.++...+..+.. .++|++|+++++..... +......+++|+.|++.++....
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 4556667777777777777765544443332 45677777764321111 11112235677777777654211
Q ss_pred eeEEcc-----CCCCcccEEEeccCCCCCc-----ccccccccccccceeeecch
Q 039786 140 SVIIEK-----GAVPDIRELRIGPCPLLME-----IPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 140 ~~~~~~-----~~~~~L~~L~i~~~~~l~~-----lp~~l~~l~~L~~l~l~~~~ 184 (210)
...... ...++|++|++.+|. ++. ++..+..+++|++|++.++.
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 100000 024477777777776 332 45555666777777777764
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=4.2e-13 Score=111.45 Aligned_cols=174 Identities=16% Similarity=0.075 Sum_probs=93.1
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCc------------ccccccccccCCccCceEEE-eec-cCc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSK------------EEILDLLSLSSPPQYLQRLY-LTG-NMK 67 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------------~~~~~~~~~~~~~~~L~~L~-l~~-~~~ 67 (210)
..++|+.|++++ .....++++++++++|+.|++.++.. ........+..++ +|+.|+ +.. .+.
T Consensus 347 ~~~~L~~L~Ls~--n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSV--EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYLD 423 (567)
T ss_dssp TTTTSSSCCCCH--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-HHHHHCGGGHHHHH
T ss_pred cCccceeccCCh--hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-hcccCcchhhcccc
Confidence 457788888875 44567889999999999998855421 0000011122222 444444 222 111
Q ss_pred cCCh------hhhc--CCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcce
Q 039786 68 KLPD------WIFK--LKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVK 139 (210)
Q Consensus 68 ~~p~------~~~~--l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 139 (210)
.++. .+.. ...|+.|++++|.++..+ .++.+++|+.|+++++... .++.....+++|+.|++.++. +.
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~ 499 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCc--CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CC
Confidence 1111 0110 124666666666655532 2566666666666532211 333344455666666666543 33
Q ss_pred eeEEccCCCCcccEEEeccCCCCCcc--cccccccccccceeeecch
Q 039786 140 SVIIEKGAVPDIRELRIGPCPLLMEI--PIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 140 ~~~~~~~~~~~L~~L~i~~~~~l~~l--p~~l~~l~~L~~l~l~~~~ 184 (210)
.++ ..+.+++|+.|++++|. ++.+ |..+..+++|+.|++.+++
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 343 44556666666666665 4444 5666666666666666654
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=2.7e-12 Score=106.91 Aligned_cols=105 Identities=23% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccc-cCCccCceEEEeec------------cCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSL-SSPPQYLQRLYLTG------------NMKK 68 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~------------~~~~ 68 (210)
.+++|++|+++++......+...++++++|++|++.++ .....+..+ ..++ +|++|++.+ .++.
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~-~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCK-QLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCT-TCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCC-CCCEEEeecCccccccccccCccCH
Confidence 35677777776522223333344666777777777632 111111112 2233 566666661 2221
Q ss_pred --CChhhhcCCCccEEEEEeecCCCcchhhhhc-CCCccEEEec
Q 039786 69 --LPDWIFKLKNLIRLGLELSGLAEEPIRVLQA-SPNLLEILLT 109 (210)
Q Consensus 69 --~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l~ 109 (210)
++.....+++|++|++..+.++...+..++. +++|+.|+++
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 2222334566666666555555554444443 5666666664
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=3.9e-11 Score=94.38 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=98.4
Q ss_pred ccCceEEEeec-cCccCCh-hhh-cCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccE
Q 039786 54 PQYLQRLYLTG-NMKKLPD-WIF-KLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQK 129 (210)
Q Consensus 54 ~~~L~~L~l~~-~~~~~p~-~~~-~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~ 129 (210)
+..++.|++++ .++.++. ++. .+++|+.|++++|.++..+...+..+++|++|+++++.. ..+.. ....+++|+.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEV 116 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCE
Confidence 33799999998 7887654 455 899999999999999887777899999999999984432 22222 3456789999
Q ss_pred EEecccCcceee-EEccCCCCcccEEEeccCCCCCcccccc----cccccccceeeecch
Q 039786 130 LLLWDFIAVKSV-IIEKGAVPDIRELRIGPCPLLMEIPIGI----EHLKNLKLLKFAGMV 184 (210)
Q Consensus 130 L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~~~~l~~lp~~l----~~l~~L~~l~l~~~~ 184 (210)
|++.++.. ..+ +.....+++|+.|++++|. ++.+|..+ ..+++|+.|+++++.
T Consensus 117 L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 117 LLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp EECCSSCC-CEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred EECCCCcc-cEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99998763 333 2334568999999999998 77788765 578999999999863
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=3.9e-11 Score=86.12 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=72.3
Q ss_pred CceEEEeec-cCccCCh--hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEe
Q 039786 56 YLQRLYLTG-NMKKLPD--WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLL 132 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~--~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 132 (210)
++++|++.+ .++.++. .++.+++|++|++++|.++......++.+++|++|+++++............+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788888888 7777654 3788888999999888887776777888888888888743322212222445677888888
Q ss_pred cccCcceeeEEccCCCCcccEEEeccCC
Q 039786 133 WDFIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
.++.-....+...+.+++|++|++.+|+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 7664322223334567778888888777
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.19 E-value=4.7e-12 Score=105.51 Aligned_cols=106 Identities=24% Similarity=0.185 Sum_probs=56.6
Q ss_pred CCCCcEEEEEe-cC--CCcchHHHHhhcCCCCceEEEEecCccccc-------------------------ccccccCCc
Q 039786 3 LRQLRKLSIRP-QN--GNGKDLCGLIANLKNLESLTVEMTSKEEIL-------------------------DLLSLSSPP 54 (210)
Q Consensus 3 L~~L~~L~l~~-~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------------------~~~~~~~~~ 54 (210)
+++|++|++++ .. .....+...+.++++|++|++.+|...... ....+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 46666666654 10 112445555556666666666654322100 011222233
Q ss_pred cCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcch-hhhhcCCCccEEEec
Q 039786 55 QYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPI-RVLQASPNLLEILLT 109 (210)
Q Consensus 55 ~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~ 109 (210)
+|+.|.+.+ ....+|..+..+++|++|++++|.++...+ ..+..+++|+.|++.
T Consensus 271 -~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 271 -KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp -TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred -cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 555555554 233356566667777777777777555443 234567777777775
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.19 E-value=1.8e-10 Score=93.30 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=15.7
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeecC
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGL 89 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l 89 (210)
+|++|++.+ .++.+| .++.+++|++|++++|.+
T Consensus 174 ~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred cccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC
Confidence 455555544 444444 344445555555544443
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=1.1e-12 Score=103.33 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=75.3
Q ss_pred CceEEEeec-cCcc-----CChhhhcCC-CccEEEEEeecCCCcchhhhh----cC-CCccEEEecCccCCc-c---eEe
Q 039786 56 YLQRLYLTG-NMKK-----LPDWIFKLK-NLIRLGLELSGLAEEPIRVLQ----AS-PNLLEILLTGTYDYE-L---FHF 119 (210)
Q Consensus 56 ~L~~L~l~~-~~~~-----~p~~~~~l~-~L~~L~l~~~~l~~~~~~~l~----~l-~~L~~L~l~~~~~~~-~---~~~ 119 (210)
+|++|++.+ .++. ++.++..++ +|++|++++|.++......++ .+ ++|+.|+++++.-.. . +..
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 677777766 4442 233344454 777777777776655443333 34 478888877332211 0 111
Q ss_pred cCCC-CCcccEEEecccCcceeeE-----EccCCCCcccEEEeccCC--C-----CCcccccccccccccceeeecch
Q 039786 120 EAGW-FPKLQKLLLWDFIAVKSVI-----IEKGAVPDIRELRIGPCP--L-----LMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 120 ~~~~-~~~L~~L~l~~~~~l~~~~-----~~~~~~~~L~~L~i~~~~--~-----l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
.... .++|+.|++.++. +.... .....+++|+.|++++|. . +..++..+..+++|++|+++++.
T Consensus 219 ~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 1111 3588888888764 33221 123567899999999986 1 22344456678889999998864
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.18 E-value=1.9e-10 Score=93.15 Aligned_cols=94 Identities=19% Similarity=0.175 Sum_probs=41.7
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD 134 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 134 (210)
+|++|++.+ .++.+|.. .++|++|++++|.++.. +.++.+++|++|+++++.-.. ++ ...++|+.|++.+
T Consensus 154 ~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l--~~~~~l~~L~~L~l~~N~l~~-l~---~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKK-LP---DLPLSLESIVAGN 224 (454)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS-CC---CCCTTCCEEECCS
T ss_pred CCCEEECCCCcCcccCCC---cccccEEECcCCcCCcC--ccccCCCCCCEEECCCCcCCc-CC---CCcCcccEEECcC
Confidence 455555544 44444432 13555555555554442 235556666666665221111 10 1123555555554
Q ss_pred cCcceeeEEccCCCCcccEEEeccCC
Q 039786 135 FIAVKSVIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 135 ~~~l~~~~~~~~~~~~L~~L~i~~~~ 160 (210)
+. +..++ ..+.+++|++|++.+|.
T Consensus 225 n~-l~~lp-~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 225 NI-LEELP-ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp SC-CSSCC-CCTTCTTCCEEECCSSC
T ss_pred Cc-CCccc-ccCCCCCCCEEECCCCc
Confidence 42 22332 23345555555555554
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.18 E-value=9.3e-11 Score=98.31 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=28.7
Q ss_pred CcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 125 PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 125 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
++|+.|++.++. +..++ ..+++|+.|++++|. ++.+|. .+++|++|++.+|.
T Consensus 221 ~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 221 SGLKELIVSGNR-LTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC
Confidence 445555554432 22222 345666666666665 555555 45677777777764
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=4.5e-11 Score=85.75 Aligned_cols=125 Identities=14% Similarity=0.026 Sum_probs=86.9
Q ss_pred cEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCCccEEEE
Q 039786 7 RKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNLIRLGL 84 (210)
Q Consensus 7 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l 84 (210)
+.+++++ .....++..+. .+++.|+++++......+...+..++ +|++|++.+ .++.+ |..+..+++|++|++
T Consensus 11 ~~l~~s~--~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTG--RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTT--SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCC--CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 4566654 23334444333 38899999886543332222356676 899999988 77775 667888999999999
Q ss_pred EeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccC
Q 039786 85 ELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFI 136 (210)
Q Consensus 85 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 136 (210)
++|.++..+...++.+++|++|+++++......+.....+++|+.|++.+++
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9999888777778899999999998443222223344567889999988765
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=1.2e-10 Score=83.70 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=73.2
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD 134 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 134 (210)
+|++|++.+ .++.+|..+..+++|+.|++++|.++..+...+.++++|++|+++++............+++|+.|++.+
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 799999988 7888888888899999999999988887777788899999999874322221112234567777777776
Q ss_pred cCcceeeEEc-cCCCCcccEEEeccCC
Q 039786 135 FIAVKSVIIE-KGAVPDIRELRIGPCP 160 (210)
Q Consensus 135 ~~~l~~~~~~-~~~~~~L~~L~i~~~~ 160 (210)
+. +..++.. ...+++|+.|++.+|+
T Consensus 112 N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 112 ND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-CCeeChhhhhcCccccEEEeCCCC
Confidence 54 3333322 3346677777777766
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=2.5e-11 Score=85.84 Aligned_cols=102 Identities=19% Similarity=0.122 Sum_probs=41.8
Q ss_pred CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe--cCCCCCcccEEEe
Q 039786 56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF--EAGWFPKLQKLLL 132 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l 132 (210)
+|++|++++ .++.+ ..++.+++|++|++++|.++..+...++.+++|++|+++++... .++. ....+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEe
Confidence 444444444 33333 23344444444444444444333233344444444444422111 1111 1223444455554
Q ss_pred cccCcceeeEEc----cCCCCcccEEEeccCC
Q 039786 133 WDFIAVKSVIIE----KGAVPDIRELRIGPCP 160 (210)
Q Consensus 133 ~~~~~l~~~~~~----~~~~~~L~~L~i~~~~ 160 (210)
.+++- ...+.. ...+++|+.|++..|.
T Consensus 121 ~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 121 LRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 44331 111111 2345666666666555
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.14 E-value=1.4e-10 Score=96.26 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=104.8
Q ss_pred CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEE
Q 039786 5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLG 83 (210)
Q Consensus 5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~ 83 (210)
+|+.|++++ .....++..+ .++|++|++++|... ..+ ..++ +|++|++.+ .++.+|. +.. +|++|+
T Consensus 60 ~L~~L~Ls~--n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~-~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNR--LNLSSLPDNL--PPQITVLEITQNALI-SLP----ELPA-SLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCS--SCCSCCCSCC--CTTCSEEECCSSCCS-CCC----CCCT-TCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCC--CCCCccCHhH--cCCCCEEECcCCCCc-ccc----cccC-CCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 788899886 2223344433 378999999886554 222 2234 899999988 7888886 443 899999
Q ss_pred EEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCC
Q 039786 84 LELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLM 163 (210)
Q Consensus 84 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~ 163 (210)
+++|.++..+. .+++|+.|+++++.... ++. .+++|+.|++.++. +..++. .. ++|+.|++++|. ++
T Consensus 127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~-L~ 193 (571)
T 3cvr_A 127 VDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNL-LE 193 (571)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSC-CS
T ss_pred CCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCC-CC
Confidence 99998877433 68899999998443222 221 56899999998875 444444 32 889999999987 67
Q ss_pred cccccccccccc-------cceeeecchH
Q 039786 164 EIPIGIEHLKNL-------KLLKFAGMVK 185 (210)
Q Consensus 164 ~lp~~l~~l~~L-------~~l~l~~~~~ 185 (210)
.+|. +.. +| +.|++.++..
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCC
T ss_pred chhh-HHH--hhhcccccceEEecCCCcc
Confidence 8887 543 66 9999988753
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=1.4e-10 Score=81.95 Aligned_cols=104 Identities=21% Similarity=0.188 Sum_probs=56.3
Q ss_pred CceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786 56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW 133 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 133 (210)
+|++|++.+ .++.+|. .++.+++|++|++++|.++..+...++.+++|++|+++++............+++|+.|++.
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 677777776 5666554 34667777777777777666555556677777777776332111111112344555666655
Q ss_pred ccCcceeeEEcc-CCCCcccEEEeccCC
Q 039786 134 DFIAVKSVIIEK-GAVPDIRELRIGPCP 160 (210)
Q Consensus 134 ~~~~l~~~~~~~-~~~~~L~~L~i~~~~ 160 (210)
++. +..++... ..+++|++|++.+|+
T Consensus 109 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 109 TNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 443 23333221 335555555555555
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=3.1e-12 Score=92.28 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=43.6
Q ss_pred HHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhc
Q 039786 21 LCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQA 99 (210)
Q Consensus 21 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 99 (210)
++..++.+++|+.|++++|.... .+ .+..++ +|++|++.+ .++.+|..+..+++|++|++++|.++.. +.++.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~ 113 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS--SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEK 113 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC--CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH--HHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc--ccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC--Ccccc
Confidence 34455566666666665543322 11 333344 566666655 5555555555555666666666655442 24555
Q ss_pred CCCccEEEec
Q 039786 100 SPNLLEILLT 109 (210)
Q Consensus 100 l~~L~~L~l~ 109 (210)
+++|++|+++
T Consensus 114 l~~L~~L~l~ 123 (198)
T 1ds9_A 114 LVNLRVLYMS 123 (198)
T ss_dssp HHHSSEEEES
T ss_pred CCCCCEEECC
Confidence 5555555554
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.10 E-value=1.9e-11 Score=101.81 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=37.3
Q ss_pred CCcccEEEecccCcceeeEEc-cCCCCcccEEEeccCCCCCc--ccccccccccccceeeecchH
Q 039786 124 FPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCPLLME--IPIGIEHLKNLKLLKFAGMVK 185 (210)
Q Consensus 124 ~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~~l~~--lp~~l~~l~~L~~l~l~~~~~ 185 (210)
+++|+.|++.+|......... ...+++|+.|++.+|+. +. +...+..+++|++|++.+|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 456666666655421111101 13478899999999984 32 222345688999999999863
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=3e-10 Score=81.58 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=37.7
Q ss_pred CCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786 29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI 106 (210)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 106 (210)
++|+.|+++++... ..+ ..+..++ +|++|++++ .++.++ ..+..+++|++|++++|.++..+...++.+++|++|
T Consensus 31 ~~l~~L~L~~n~i~-~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVP-KELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCC-SCC-GGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCc-hhH-HHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 34555555553332 111 2334444 555555554 444433 234555555555555555555444445555555555
Q ss_pred Eec
Q 039786 107 LLT 109 (210)
Q Consensus 107 ~l~ 109 (210)
+++
T Consensus 108 ~L~ 110 (193)
T 2wfh_A 108 SLH 110 (193)
T ss_dssp ECC
T ss_pred ECC
Confidence 554
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=6.8e-11 Score=100.98 Aligned_cols=117 Identities=21% Similarity=0.150 Sum_probs=80.5
Q ss_pred ccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCc
Q 039786 48 LSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPK 126 (210)
Q Consensus 48 ~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 126 (210)
..+..+. +|+.|+|.+ .+..+|..+..+++|++|+|++|.++.. +..++.+++|++|+|+++... .++.....+++
T Consensus 218 ~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQ-LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp ----CCC-CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhccCC-CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 3345555 788888887 7777887777888888888888887743 356788888888888733322 44445566778
Q ss_pred ccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCccccc
Q 039786 127 LQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIG 168 (210)
Q Consensus 127 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~ 168 (210)
|+.|++.++. +..++...+.+++|+.|++.+|.....+|..
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 8888888764 4566666677888888888888743344443
No 130
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=1.8e-10 Score=90.47 Aligned_cols=177 Identities=21% Similarity=0.324 Sum_probs=114.8
Q ss_pred CCCcEEEEEe-c-C-CC----cchHHHHhhcCCCCceEEEEecCccc--c--c---ccccc-cCCccCceEEEeeccC-c
Q 039786 4 RQLRKLSIRP-Q-N-GN----GKDLCGLIANLKNLESLTVEMTSKEE--I--L---DLLSL-SSPPQYLQRLYLTGNM-K 67 (210)
Q Consensus 4 ~~L~~L~l~~-~-~-~~----~~~~~~~l~~l~~L~~L~l~~~~~~~--~--~---~~~~~-~~~~~~L~~L~l~~~~-~ 67 (210)
..++.|.+.. . . .. ...+..++..+++|+.|.|....... . . ++..+ ..+| +|++|.+.++. .
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P-~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT-TCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC-CCcEEEEeCCCCc
Confidence 4567777763 1 1 00 11234456678999999997642211 0 1 12122 4456 99999998732 2
Q ss_pred cCChhhhcCCCccEEEEEeecCCCcchhhhh--cCCCccEEEecC---ccCCcc-e-----EecCCCCCcccEEEecccC
Q 039786 68 KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQ--ASPNLLEILLTG---TYDYEL-F-----HFEAGWFPKLQKLLLWDFI 136 (210)
Q Consensus 68 ~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~---~~~~~~-~-----~~~~~~~~~L~~L~l~~~~ 136 (210)
.++. + .+++|++|++..|.++......++ .+|+|+.|+|+. ...+.. + ......||+|+.|.+.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 4554 3 379999999999988777776666 799999999962 111110 1 1122468999999998876
Q ss_pred cceee---EEccCCCCcccEEEeccCCCCCc-----ccccccccccccceeeecch
Q 039786 137 AVKSV---IIEKGAVPDIRELRIGPCPLLME-----IPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 137 ~l~~~---~~~~~~~~~L~~L~i~~~~~l~~-----lp~~l~~l~~L~~l~l~~~~ 184 (210)
..... .+....+++|++|+++.|. ++. ++.++.++++|+.|++.+|.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 43211 1223468999999998876 543 45566788999999999874
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=2.4e-11 Score=101.18 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=25.7
Q ss_pred CCcccEEEeccCCCCCc--ccccccccccccceeeecc
Q 039786 148 VPDIRELRIGPCPLLME--IPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 148 ~~~L~~L~i~~~~~l~~--lp~~l~~l~~L~~l~l~~~ 183 (210)
+++|++|++.+|. ++. ++..+..+++|++|++.+|
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 5788899998888 442 2222457889999999887
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=5.6e-12 Score=90.90 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=92.9
Q ss_pred HHhhcCCCCceEEEEecCcccccc-c----ccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhh
Q 039786 23 GLIANLKNLESLTVEMTSKEEILD-L----LSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRV 96 (210)
Q Consensus 23 ~~l~~l~~L~~L~l~~~~~~~~~~-~----~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~ 96 (210)
..+.....++.+++..+......+ + ..+..++ +|++|++.+ .++.+| .+..+++|++|++++|.++..+ ..
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~-~~ 88 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK-ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE-NL 88 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT-TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCS-SH
T ss_pred HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCC-CCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccccc-ch
Confidence 334555555555555543322211 1 1345555 888888887 777788 7788888999999888876532 35
Q ss_pred hhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEE--ccCCCCcccEEEeccCCCCCcccc-------
Q 039786 97 LQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVII--EKGAVPDIRELRIGPCPLLMEIPI------- 167 (210)
Q Consensus 97 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~i~~~~~l~~lp~------- 167 (210)
+..+++|++|+++++.... ++ ....+++|+.|++.++. +..++. ....+++|++|++.+|+.....|.
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 5667888888887332221 22 33456788888887654 232221 345678888888888873222232
Q ss_pred ---ccccccccccee
Q 039786 168 ---GIEHLKNLKLLK 179 (210)
Q Consensus 168 ---~l~~l~~L~~l~ 179 (210)
.+..+++|+.|+
T Consensus 166 ~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHCSSCSEEC
T ss_pred HHHHHHhCCCcEEEC
Confidence 156677777776
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=1.6e-09 Score=76.44 Aligned_cols=106 Identities=23% Similarity=0.155 Sum_probs=78.1
Q ss_pred CCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccE
Q 039786 28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLE 105 (210)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 105 (210)
.++|+.|+++++... ..+...+..++ +|++|++.+ .++.+|. .+..+++|+.|++++|.++..+...++.+++|++
T Consensus 27 ~~~l~~L~l~~n~l~-~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 27 PSSATRLELESNKLQ-SLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp CTTCSEEECCSSCCC-CCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEeCCCccc-EeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence 368999999986543 33334456666 899999988 7877765 4678899999999999988777667888999999
Q ss_pred EEecCccCCcceEec-CCCCCcccEEEecccC
Q 039786 106 ILLTGTYDYELFHFE-AGWFPKLQKLLLWDFI 136 (210)
Q Consensus 106 L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 136 (210)
|+++++... .++.. ...+++|+.|++.+++
T Consensus 105 L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 105 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCcce-EeCHHHhcCCcccCEEEecCCC
Confidence 999844322 23222 3557889999988765
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=7.4e-10 Score=92.04 Aligned_cols=119 Identities=17% Similarity=0.107 Sum_probs=84.3
Q ss_pred CCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEe
Q 039786 30 NLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILL 108 (210)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 108 (210)
.|+.|++++|..... ..+..++ +|+.|++++ .++.+|..++.+++|+.|++++|.++..+ .++.+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~l---p~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL---CHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSC---CCGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCC---cCccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEEC
Confidence 588899988655432 2366666 899999988 78888888889999999999999887743 7888999999999
Q ss_pred cCccCCcce-EecCCCCCcccEEEecccCcceeeEEccC----CCCcccEEE
Q 039786 109 TGTYDYELF-HFEAGWFPKLQKLLLWDFIAVKSVIIEKG----AVPDIRELR 155 (210)
Q Consensus 109 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~----~~~~L~~L~ 155 (210)
+++...... +.....+++|+.|++.+++ +...+.... .+|+|+.|+
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 844322221 3445678889999988765 333322221 367788775
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.89 E-value=8.2e-10 Score=94.34 Aligned_cols=112 Identities=17% Similarity=0.070 Sum_probs=87.7
Q ss_pred CChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCC
Q 039786 69 LPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAV 148 (210)
Q Consensus 69 ~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 148 (210)
.|..+..++.|+.|+|++|.+...+ ..+..+++|++|+|+++... .++.....+++|+.|++.++. +..++...+.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 4567788999999999999987543 45669999999999844322 455556778999999999876 45666667789
Q ss_pred CcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786 149 PDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 149 ~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~ 184 (210)
++|++|++.+|. ++.+|.++..+++|++|++.++.
T Consensus 293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence 999999999997 78999999999999999999864
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.87 E-value=3.3e-09 Score=74.82 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=43.3
Q ss_pred EEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCCCcccEEEecccC
Q 039786 59 RLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWFPKLQKLLLWDFI 136 (210)
Q Consensus 59 ~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 136 (210)
.+++.+ .++.+|..+. ++|++|++++|.++..+...++.+++|++|++++... ..++.. ...+++|+.|++.++.
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCCc
Confidence 444444 4444443322 4555555555555444444445555555555542211 111111 1234455555554432
Q ss_pred cceeeEEc-cCCCCcccEEEeccCC
Q 039786 137 AVKSVIIE-KGAVPDIRELRIGPCP 160 (210)
Q Consensus 137 ~l~~~~~~-~~~~~~L~~L~i~~~~ 160 (210)
+..++.. .+.+++|++|++.+|+
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred -cceeCHHHhccccCCCEEEeCCCC
Confidence 2222222 3345666666666665
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.81 E-value=5.8e-09 Score=73.24 Aligned_cols=54 Identities=31% Similarity=0.413 Sum_probs=23.8
Q ss_pred CceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786 56 YLQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 109 (210)
+|++|++.+ .++.+ |..+..+++|++|++++|.++..+...+..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 444444444 44443 2234444444444444444444333334444444444443
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=2.8e-08 Score=77.03 Aligned_cols=99 Identities=15% Similarity=0.067 Sum_probs=45.5
Q ss_pred CCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCccc-EEEecccCcceeeEE-ccCCCCccc
Q 039786 76 LKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQ-KLLLWDFIAVKSVII-EKGAVPDIR 152 (210)
Q Consensus 76 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~-~L~l~~~~~l~~~~~-~~~~~~~L~ 152 (210)
+++|+.+++.+|.++..+...+.++++|+.+.+... ...+.. ...++++|+ .+.+.+ .+..+.. ....+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 455555655555555544455555666666655421 111111 123334555 555543 2332221 122345566
Q ss_pred EEEeccCCCCCcccc-ccccccccccee
Q 039786 153 ELRIGPCPLLMEIPI-GIEHLKNLKLLK 179 (210)
Q Consensus 153 ~L~i~~~~~l~~lp~-~l~~l~~L~~l~ 179 (210)
.+++..+. ++.++. .+..+++|+.|+
T Consensus 301 ~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 66655444 344433 334555665554
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.75 E-value=1.3e-08 Score=71.79 Aligned_cols=54 Identities=30% Similarity=0.364 Sum_probs=25.3
Q ss_pred CceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786 56 YLQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 109 (210)
+|++|++.+ .++.+ |..+..+++|++|++++|.++..+...++.+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 455555544 44443 3334444555555555554444433334445555555554
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.71 E-value=1.6e-08 Score=70.92 Aligned_cols=98 Identities=19% Similarity=0.122 Sum_probs=74.0
Q ss_pred CcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEEE
Q 039786 6 LRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRLG 83 (210)
Q Consensus 6 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~ 83 (210)
.+.+++++ .....++..+ .++|+.|++++|.... .....+..++ +|++|++.+ .++.+|. .+..+++|++|+
T Consensus 11 ~~~l~~s~--n~l~~ip~~~--~~~l~~L~L~~N~i~~-~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSG--KSLASVPTGI--PTTTQVLYLYDNQITK-LEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTT--SCCSSCCSCC--CTTCSEEECCSSCCCC-CCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCC--CCcCccCccC--CCCCcEEEcCCCcCCc-cChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 45677764 3333444433 3789999999865433 3334567777 899999998 8888776 457899999999
Q ss_pred EEeecCCCcchhhhhcCCCccEEEec
Q 039786 84 LELSGLAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 84 l~~~~l~~~~~~~l~~l~~L~~L~l~ 109 (210)
+++|.++..+...+..+++|++|+++
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 99999988777778999999999998
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=1.3e-07 Score=73.31 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=51.2
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhc-CCCCceEEEEecCccc-------------------ccccccccC--------Cc
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIAN-LKNLESLTVEMTSKEE-------------------ILDLLSLSS--------PP 54 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~-------------------~~~~~~~~~--------~~ 54 (210)
+++++.|.+++ ...... ...+.. +++|+.|+++++.... ..+...|.. +.
T Consensus 24 ~~~l~~L~l~g-~i~~~~-~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTG-KLNAED-FRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEE-EECHHH-HHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hCceeEEEEec-cccHHH-HHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 34678888886 222222 234444 7888899888765430 111223334 55
Q ss_pred cCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCC
Q 039786 55 QYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLA 90 (210)
Q Consensus 55 ~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~ 90 (210)
+|+.+.+...++.++. .+..+++|+.+++..|.+.
T Consensus 102 -~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 102 -TLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp -TCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred -CCcEEECCccccchhHHHhhcCcccceEEcCCCCcc
Confidence 7888888776666554 5677888888888777543
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.3e-07 Score=73.57 Aligned_cols=90 Identities=22% Similarity=0.269 Sum_probs=62.7
Q ss_pred CcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcch
Q 039786 17 NGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPI 94 (210)
Q Consensus 17 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~ 94 (210)
....++. ++.+++|+.|+|++++.....+...+..++ +|++|+|++ .++.++ ..+..+++|+.|+|++|.++..+.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 3455666 788888888888753343444444566676 788888887 677644 466788888888888888777665
Q ss_pred hhhhcCCCccEEEec
Q 039786 95 RVLQASPNLLEILLT 109 (210)
Q Consensus 95 ~~l~~l~~L~~L~l~ 109 (210)
..+..++ |+.|++.
T Consensus 98 ~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 98 KTVQGLS-LQELVLS 111 (347)
T ss_dssp TTTCSCC-CCEEECC
T ss_pred HHcccCC-ceEEEee
Confidence 5555555 8888887
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=2.5e-07 Score=64.84 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=43.9
Q ss_pred CceEEEeec-cCcc--CChhhhcCCCccEEEEEeec-CCCcchhhhhcC----CCccEEEecCccCCcce-EecCCCCCc
Q 039786 56 YLQRLYLTG-NMKK--LPDWIFKLKNLIRLGLELSG-LAEEPIRVLQAS----PNLLEILLTGTYDYELF-HFEAGWFPK 126 (210)
Q Consensus 56 ~L~~L~l~~-~~~~--~p~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l----~~L~~L~l~~~~~~~~~-~~~~~~~~~ 126 (210)
+|++|++++ .++. +. .+..+++|++|+|++|. +++..+..++.+ ++|++|+|+.|.....- ......+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 466666665 3332 21 23556666666666665 666556666554 35666666655322111 111234566
Q ss_pred ccEEEecccCcce
Q 039786 127 LQKLLLWDFIAVK 139 (210)
Q Consensus 127 L~~L~l~~~~~l~ 139 (210)
|+.|++.+|+.+.
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 6666666666544
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.46 E-value=6.6e-09 Score=81.98 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=89.3
Q ss_pred CCCcEEEEEecCCCcc----hHHHHhhcC-CCCceEEEEecCccccccccccc-CCccCceEEEeec-cCccC-----Ch
Q 039786 4 RQLRKLSIRPQNGNGK----DLCGLIANL-KNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKKL-----PD 71 (210)
Q Consensus 4 ~~L~~L~l~~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~-----p~ 71 (210)
++|+.|++++ +.... .+...+... ++|+.|++++|.... .....+. .+. +|++|++.+ .++.. ..
T Consensus 72 ~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHH
Confidence 5788888885 22222 233333322 688899998865422 2222222 234 788888887 55431 11
Q ss_pred hh-hcCCCccEEEEEeecCCCcchhhh----hcCCCccEEEecCccCCcc----eEecCCCCCcccEEEecccCccee--
Q 039786 72 WI-FKLKNLIRLGLELSGLAEEPIRVL----QASPNLLEILLTGTYDYEL----FHFEAGWFPKLQKLLLWDFIAVKS-- 140 (210)
Q Consensus 72 ~~-~~l~~L~~L~l~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~-- 140 (210)
.+ ...++|+.|++++|.++......+ ...++|++|+++++...+. +.......++|+.|++.+|.-...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 22 235789999999988766544433 5688899999884432211 111223456888888887753211
Q ss_pred --eEEccCCCCcccEEEeccCC
Q 039786 141 --VIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 141 --~~~~~~~~~~L~~L~i~~~~ 160 (210)
+.......++|++|++++|.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhCCCCCEEeccCCC
Confidence 11111235788999998887
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=4.4e-09 Score=83.01 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=101.6
Q ss_pred CCCCceEEEEecCccccccccc----ccCCccCceEEEeec-cCcc--CChhhhcCCCccEEEEEeecCCCcchhhhh--
Q 039786 28 LKNLESLTVEMTSKEEILDLLS----LSSPPQYLQRLYLTG-NMKK--LPDWIFKLKNLIRLGLELSGLAEEPIRVLQ-- 98 (210)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~-~~~~--~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~-- 98 (210)
+++|+.|++++|.... ..... +...+.+|++|++.+ .++. +......+++|+.|++++|.++......++
T Consensus 71 ~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTP-VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCH-HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCH-HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3689999999876432 11111 122223899999988 5543 222334567899999999998877665553
Q ss_pred ---cCCCccEEEecCccCCc----ceEecCCCCCcccEEEecccCccee----eEEccCCCCcccEEEeccCCCCC----
Q 039786 99 ---ASPNLLEILLTGTYDYE----LFHFEAGWFPKLQKLLLWDFIAVKS----VIIEKGAVPDIRELRIGPCPLLM---- 163 (210)
Q Consensus 99 ---~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~i~~~~~l~---- 163 (210)
..++|+.|+++++.... .+.......++|++|++.++.-... +.......++|+.|++++|. ++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 46899999998554221 1111123568899999998763211 11122345789999999998 44
Q ss_pred -cccccccccccccceeeecch
Q 039786 164 -EIPIGIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 164 -~lp~~l~~l~~L~~l~l~~~~ 184 (210)
.++..+...++|++|++.++.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhCCCCCEEeccCCC
Confidence 234445567899999999985
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=3.6e-07 Score=64.06 Aligned_cols=83 Identities=13% Similarity=0.244 Sum_probs=62.9
Q ss_pred CCCceEEEEecCcccccccccccCCccCceEEEeec--cCcc--CChhhhcC----CCccEEEEEeec-CCCcchhhhhc
Q 039786 29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKK--LPDWIFKL----KNLIRLGLELSG-LAEEPIRVLQA 99 (210)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~--~p~~~~~l----~~L~~L~l~~~~-l~~~~~~~l~~ 99 (210)
-.|++|++++|. +.+..+..+..++ +|++|+|++ .++. +. .+..+ ++|++|+|++|. +++..+..+..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 468999999876 6666666777777 899999987 3443 21 33443 479999999997 88888888889
Q ss_pred CCCccEEEecCccCC
Q 039786 100 SPNLLEILLTGTYDY 114 (210)
Q Consensus 100 l~~L~~L~l~~~~~~ 114 (210)
+++|++|++++|...
T Consensus 138 ~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGV 152 (176)
T ss_dssp CTTCCEEEEESCTTC
T ss_pred CCCCCEEECCCCCCC
Confidence 999999999877533
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.35 E-value=4.6e-07 Score=70.55 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=55.8
Q ss_pred ccCCccCceEEEeec--cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCCC
Q 039786 50 LSSPPQYLQRLYLTG--NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWFP 125 (210)
Q Consensus 50 ~~~~~~~L~~L~l~~--~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~ 125 (210)
+..+. +|++|+|.+ .++.+| ..++.+++|+.|+|++|.++..+...++.+++|++|+|++..-. .++.. ...+
T Consensus 27 l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~- 103 (347)
T 2ifg_A 27 LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL- 103 (347)
T ss_dssp SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSC-
T ss_pred CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccC-
Confidence 55555 788888863 667665 46778888888888888887777777888888888888733211 22211 1222
Q ss_pred cccEEEecccC
Q 039786 126 KLQKLLLWDFI 136 (210)
Q Consensus 126 ~L~~L~l~~~~ 136 (210)
.|+.|++.+++
T Consensus 104 ~L~~l~l~~N~ 114 (347)
T 2ifg_A 104 SLQELVLSGNP 114 (347)
T ss_dssp CCCEEECCSSC
T ss_pred CceEEEeeCCC
Confidence 37777776544
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.34 E-value=4.1e-07 Score=71.39 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=102.8
Q ss_pred CCCCCcEEEEEe-cCC-------CcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CCh
Q 039786 2 KLRQLRKLSIRP-QNG-------NGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPD 71 (210)
Q Consensus 2 ~L~~L~~L~l~~-~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~ 71 (210)
++++|+.|.+.. ... ....+...+..+++|+.|.+.++... .+..+. .+ +|++|.+.. .+.. .-.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l---~l~~~~-~~-~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL---SIGKKP-RP-NLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC---BCCSCB-CT-TCSEEEEECSBCCHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc---eecccc-CC-CCcEEEEecCCCChHHHH
Confidence 468999999964 111 01246677888999999999986322 122233 45 899999986 4332 111
Q ss_pred hh--hcCCCccEEEEEeec---CCCcch----hhh--hcCCCccEEEecCccCCcc---eEecCCCCCcccEEEecccCc
Q 039786 72 WI--FKLKNLIRLGLELSG---LAEEPI----RVL--QASPNLLEILLTGTYDYEL---FHFEAGWFPKLQKLLLWDFIA 137 (210)
Q Consensus 72 ~~--~~l~~L~~L~l~~~~---l~~~~~----~~l--~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~ 137 (210)
.+ ..+++|+.|+|+.+. ...... ..+ ..+|+|++|.+.++..... .......+++|+.|+++.+.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~- 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV- 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence 22 378999999997421 111111 112 3589999999985543221 11122467999999997653
Q ss_pred ceee-----EEccCCCCcccEEEeccCCCCCccccccccccc-c-cceeeecc
Q 039786 138 VKSV-----IIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKN-L-KLLKFAGM 183 (210)
Q Consensus 138 l~~~-----~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~-L-~~l~l~~~ 183 (210)
+... ......+++|+.|++..|. ++ +.++..+.. + -+++++..
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~--d~~~~~l~~alg~~~~~~~~ 340 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNY-LS--DEMKKELQKSLPMKIDVSDS 340 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBB-CC--HHHHHHHHHHCCSEEECCSB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCc-CC--HHHHHHHHHHcCCEEEecCC
Confidence 3321 1111247899999999886 43 233334433 2 34556554
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.20 E-value=9.4e-06 Score=64.59 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=57.8
Q ss_pred CceEEEeeccCccCCh-hhhcCCCccEEEEEeecCC-----CcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCccc
Q 039786 56 YLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLA-----EEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQ 128 (210)
Q Consensus 56 ~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~ 128 (210)
+|+.+.+...++.++. .+..+++|+.+.+.++.+. ..+...+.++++|+.+.+.+. ...+.. ...++++|+
T Consensus 249 ~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCC
T ss_pred CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCcc
Confidence 3444444433443322 3445556666666554432 122334555566666655421 111111 123345666
Q ss_pred EEEecccCcceeeEEc-cCCCCcccEEEeccCCCCCcccc-ccccc-ccccceeeecchH
Q 039786 129 KLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCPLLMEIPI-GIEHL-KNLKLLKFAGMVK 185 (210)
Q Consensus 129 ~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~~l~~lp~-~l~~l-~~L~~l~l~~~~~ 185 (210)
.+.+... +..+... ...+ +|+.+++.++. ...++. .+..+ .+++.|+|-....
T Consensus 327 ~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 327 QLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHHH
Confidence 6666431 3322211 1234 67888887765 333333 23444 3677777766543
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.06 E-value=5.6e-05 Score=60.10 Aligned_cols=171 Identities=15% Similarity=0.209 Sum_probs=112.5
Q ss_pred CCCCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCChhhhcCCCcc
Q 039786 2 KLRQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNLI 80 (210)
Q Consensus 2 ~L~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~~~~~l~~L~ 80 (210)
++++|+.+++.. .....+. .++. .++|+.+.+..+ ....+..+|..+. +|+.+.+...++.++.....-.+|+
T Consensus 178 ~c~~L~~l~l~~--n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~-~L~~l~l~~~l~~I~~~aF~~~~L~ 251 (401)
T 4fdw_A 178 YCYNLKKADLSK--TKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTS-QLKTIEIPENVSTIGQEAFRESGIT 251 (401)
T ss_dssp TCTTCCEEECTT--SCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCT-TCCCEECCTTCCEECTTTTTTCCCS
T ss_pred CcccCCeeecCC--CcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCC-CCCEEecCCCccCccccccccCCcc
Confidence 578899999874 1222222 2333 589999999753 4444556677777 8999999887776655332227999
Q ss_pred EEEEEeecCCCcchhhhhcCCCccEEEecCc-cC-CcceEec---CCCCCcccEEEecccCcceeeEEc-cCCCCcccEE
Q 039786 81 RLGLELSGLAEEPIRVLQASPNLLEILLTGT-YD-YELFHFE---AGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIREL 154 (210)
Q Consensus 81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~-~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L 154 (210)
.+.+.+ .++..+..++.++++|+.+.+... .. .....+. ..++++|+.+.+.+ .+..+... ...+.+|+.+
T Consensus 252 ~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 252 TVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp EEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEE
T ss_pred EEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEE
Confidence 999954 466766778899999999999732 21 1111223 34567899988873 24444322 2346889999
Q ss_pred EeccCCCCCcccc-cccccccccceeeecch
Q 039786 155 RIGPCPLLMEIPI-GIEHLKNLKLLKFAGMV 184 (210)
Q Consensus 155 ~i~~~~~l~~lp~-~l~~l~~L~~l~l~~~~ 184 (210)
.+..+ ++.++. .+..+ +|++|.+.++.
T Consensus 329 ~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 329 TIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp EECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred EECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 99654 455544 45677 99999998753
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.69 E-value=6.3e-06 Score=58.42 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=72.8
Q ss_pred chHHHHhhcCCCCceEEEEecCccccccc----ccccCCccCceEEEeec-cCcc-----CChhhhcCCCccEEEEEeec
Q 039786 19 KDLCGLIANLKNLESLTVEMTSKEEILDL----LSLSSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNLIRLGLELSG 88 (210)
Q Consensus 19 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~-~~~~-----~p~~~~~l~~L~~L~l~~~~ 88 (210)
..+...+...+.|++|++++|........ ..+...+ +|++|+|.+ .+.. +...+...+.|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 34456677788999999988623322211 2234444 799999987 5542 33345566889999999998
Q ss_pred CCCcchh----hhhcCCCccEEEe--cCccCCcc----eEecCCCCCcccEEEecccC
Q 039786 89 LAEEPIR----VLQASPNLLEILL--TGTYDYEL----FHFEAGWFPKLQKLLLWDFI 136 (210)
Q Consensus 89 l~~~~~~----~l~~l~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~ 136 (210)
+...... .+...++|++|++ +.+..+.. +.......++|+.|++.++.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 8776533 3456688999999 52322211 11112234678899887664
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.59 E-value=1.7e-05 Score=56.15 Aligned_cols=109 Identities=6% Similarity=-0.044 Sum_probs=61.4
Q ss_pred cCCccCceEEEeecc--Ccc-----CChhhhcCCCccEEEEEeecCCCcchhhh----hcCCCccEEEecCccCCcc---
Q 039786 51 SSPPQYLQRLYLTGN--MKK-----LPDWIFKLKNLIRLGLELSGLAEEPIRVL----QASPNLLEILLTGTYDYEL--- 116 (210)
Q Consensus 51 ~~~~~~L~~L~l~~~--~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~--- 116 (210)
...+ +|++|++.++ +.. +...+...++|++|+|++|.+.......+ ...++|++|+|+++.....
T Consensus 33 ~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 3344 7888888752 321 22334556788888888888776554333 3457888888874332211
Q ss_pred -eEecCCCCCcccEEEe--cccCccee----eEEccCCCCcccEEEeccCC
Q 039786 117 -FHFEAGWFPKLQKLLL--WDFIAVKS----VIIEKGAVPDIRELRIGPCP 160 (210)
Q Consensus 117 -~~~~~~~~~~L~~L~l--~~~~~l~~----~~~~~~~~~~L~~L~i~~~~ 160 (210)
+.......++|+.|++ .++.-... +.......+.|++|++.+|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 1112233467888888 44432111 11111134678888888776
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=0.00012 Score=54.83 Aligned_cols=80 Identities=25% Similarity=0.283 Sum_probs=56.8
Q ss_pred hcCCCCceEEEEecCcccccccc-cccCCccCceEEEeec-cCccCChhhhcCC--CccEEEEEeecCCCcc-------h
Q 039786 26 ANLKNLESLTVEMTSKEEILDLL-SLSSPPQYLQRLYLTG-NMKKLPDWIFKLK--NLIRLGLELSGLAEEP-------I 94 (210)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~--~L~~L~l~~~~l~~~~-------~ 94 (210)
.++++|+.|++++|.......+. .+..++ +|+.|+|++ .++.+. .+..+. +|+.|++++|.+.... .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46899999999997664432222 223566 999999988 676653 344444 9999999999876421 2
Q ss_pred hhhhcCCCccEEE
Q 039786 95 RVLQASPNLLEIL 107 (210)
Q Consensus 95 ~~l~~l~~L~~L~ 107 (210)
..+..+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467899999886
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.08 E-value=0.00017 Score=54.00 Aligned_cols=79 Identities=27% Similarity=0.302 Sum_probs=55.0
Q ss_pred CCccCceEEEeec-cCcc---CChhhhcCCCccEEEEEeecCCCc-chhhhhcCCCccEEEecCccCCcceE-------e
Q 039786 52 SPPQYLQRLYLTG-NMKK---LPDWIFKLKNLIRLGLELSGLAEE-PIRVLQASPNLLEILLTGTYDYELFH-------F 119 (210)
Q Consensus 52 ~~~~~L~~L~l~~-~~~~---~p~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~-------~ 119 (210)
.++ +|+.|+|++ .++. +|..+..+++|+.|+|++|.++.. .+..+..+ +|+.|++++.......+ .
T Consensus 168 ~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 355 899999998 6665 456678999999999999998774 23344444 99999998332222111 1
Q ss_pred cCCCCCcccEEEe
Q 039786 120 EAGWFPKLQKLLL 132 (210)
Q Consensus 120 ~~~~~~~L~~L~l 132 (210)
....||+|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2346888988864
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.44 E-value=0.049 Score=42.48 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=42.4
Q ss_pred hhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCc
Q 039786 25 IANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNL 103 (210)
Q Consensus 25 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 103 (210)
+....+|+...+... ........+.... .|+.+.+...++.+.. .+..+.+|+.+.+..+ +...+...+.++++|
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~-~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMK-ALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCS-SCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc--eeEEccccccCCc-cceEEEcCCCccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 344556666666432 1222223344444 5666666554444432 3455666666666543 444444556666677
Q ss_pred cEEEec
Q 039786 104 LEILLT 109 (210)
Q Consensus 104 ~~L~l~ 109 (210)
+.+.+.
T Consensus 289 ~~i~l~ 294 (379)
T 4h09_A 289 TKVVMD 294 (379)
T ss_dssp CEEEEC
T ss_pred cccccc
Confidence 766664
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.39 E-value=0.043 Score=43.12 Aligned_cols=107 Identities=10% Similarity=0.068 Sum_probs=72.5
Q ss_pred HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCC
Q 039786 23 GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASP 101 (210)
Q Consensus 23 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 101 (210)
.++..+..|+.+.+.... ...+-.++.... .|+.+.+...++.++. .+..+.+|+.+.|..+ ++.....++.+++
T Consensus 259 ~aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~-~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV--VSIGTGAFMNCP-ALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTC--CEECTTTTTTCT-TCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEeccccc--ceecCccccccc-ccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 346677889998886532 233334556665 8999998777777665 5667899999998764 5555566788999
Q ss_pred CccEEEecCccCCcceE-ecCCCCCcccEEEeccc
Q 039786 102 NLLEILLTGTYDYELFH-FEAGWFPKLQKLLLWDF 135 (210)
Q Consensus 102 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 135 (210)
+|+.+.+... ...+. .....|++|+.+.+.+.
T Consensus 335 ~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 9999998522 12221 23456778888887653
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.21 E-value=0.021 Score=44.94 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=66.9
Q ss_pred HhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCC
Q 039786 24 LIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPN 102 (210)
Q Consensus 24 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 102 (210)
.+..+..++....... . .+-..+.... +|+.+.+...++.++. .+..+.+|+.+++..+ ++..+..++.++++
T Consensus 271 ~F~~~~~l~~~~~~~~-~---i~~~~F~~~~-~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSV-I---VPEKTFYGCS-SLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp TTTTCTTCCEEEECSS-E---ECTTTTTTCT-TCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred ccccccccceeccCce-e---eccccccccc-cccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 3456677777766542 1 1223445555 8999998776666654 5677899999998654 66656677889999
Q ss_pred ccEEEecCccCCcceE-ecCCCCCcccEEEecc
Q 039786 103 LLEILLTGTYDYELFH-FEAGWFPKLQKLLLWD 134 (210)
Q Consensus 103 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 134 (210)
|+.+.+... ...+. ....++++|+.+.+..
T Consensus 345 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 345 LSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 999988522 12221 1234567888888754
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.17 E-value=0.04 Score=43.35 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=30.5
Q ss_pred CCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccCCCCCcccc-cccccccccceeeec
Q 039786 123 WFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCPLLMEIPI-GIEHLKNLKLLKFAG 182 (210)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~~l~~lp~-~l~~l~~L~~l~l~~ 182 (210)
.+.+|+.+.+.. .+..+... ...+.+|+.+++... ++.++. .+..+.+|+.+.+-.
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence 345666666542 23322211 223567888877532 444543 456778888887744
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.91 E-value=0.073 Score=41.83 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=77.3
Q ss_pred ccccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceE-ecCCCCC
Q 039786 48 LSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFH-FEAGWFP 125 (210)
Q Consensus 48 ~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~ 125 (210)
.+|.... +|+.+.+...+..+.. .+..+++|+.+.+.. .++..+...+.++++|+.+.+... ...+. ....++.
T Consensus 259 ~aF~~c~-~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCA-YLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCS-SCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred ceeeecc-cccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 4556665 8999998775555443 567789999999864 366666678889999999998522 12221 1234567
Q ss_pred cccEEEecccCcceeeEE-ccCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786 126 KLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM 183 (210)
Q Consensus 126 ~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~ 183 (210)
+|+.+.+.. .+..+.. ....+.+|+.+++.++.. . ...+....+|+.+.+...
T Consensus 335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~--~-~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS--Q-WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH--H-HHTCBCCCCC--------
T ss_pred CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee--e-hhhhhccCCCCEEEeCCC
Confidence 899998853 2333321 234578899999987641 1 234556778888877543
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.41 E-value=0.036 Score=36.50 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=15.2
Q ss_pred CceEEEeec-cCccCCh-hhhcCCCccEEEEEeec
Q 039786 56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSG 88 (210)
Q Consensus 56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~ 88 (210)
+|++|+|++ .++.+|. .+..+++|+.|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555544 4444433 23344455555555444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.34 E-value=0.054 Score=38.43 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=42.7
Q ss_pred HHhhcCCCCceEEEEecCccccccc----ccccCCccCceEEEeec-cCcc-----CChhhhcCCCccEEEEEeecCCCc
Q 039786 23 GLIANLKNLESLTVEMTSKEEILDL----LSLSSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNLIRLGLELSGLAEE 92 (210)
Q Consensus 23 ~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~-~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~ 92 (210)
..+.+-+.|++|++++++..+.... +.+..-. .|+.|+|.+ .+.. +...+..=+.|++|+|++|.|...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 3344446677777765323322211 2233333 577777765 3332 222333345677777777776665
Q ss_pred chhhhh----cCCCccEEEec
Q 039786 93 PIRVLQ----ASPNLLEILLT 109 (210)
Q Consensus 93 ~~~~l~----~l~~L~~L~l~ 109 (210)
....+. .-+.|+.|+|+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECC
T ss_pred HHHHHHHHHhhCCceeEEECC
Confidence 544333 23445555553
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.89 E-value=0.14 Score=39.90 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=80.5
Q ss_pred CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCCh-hhhcCCCccE
Q 039786 3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIR 81 (210)
Q Consensus 3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~ 81 (210)
..+|+.+.+.. .....-..++..+..|+.+.+..+ ....+...+.... +|+.+.+...+..++. .+..+++|+.
T Consensus 216 ~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~-~l~~i~l~~~i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 216 GKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCT-ALKTLNFYAKVKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCT-TCCEEEECCCCSEECTTTTTTCTTCCE
T ss_pred ccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceee-hhccccccccceecccccccccccccc
Confidence 34566666643 111111344567789999998753 3333334555565 8999999876776654 5678899999
Q ss_pred EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEec
Q 039786 82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLW 133 (210)
Q Consensus 82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~ 133 (210)
+.+.++.++..+..++.++++|+.+.+... ...+.. ....+++|+.+.+.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 999887777766678889999999998522 122211 23445677777664
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.70 E-value=0.17 Score=33.24 Aligned_cols=49 Identities=22% Similarity=0.148 Sum_probs=38.6
Q ss_pred EEEeec-cCc--cCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786 59 RLYLTG-NMK--KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT 109 (210)
Q Consensus 59 ~L~l~~-~~~--~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 109 (210)
.++-++ .++ .+|.. -.++|++|+|++|.++..+...+..+++|+.|+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence 445555 566 67743 22579999999999988888888999999999998
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.21 E-value=0.088 Score=37.34 Aligned_cols=104 Identities=14% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCCcEEEEEec-CCCc---chHHHHhhcCCCCceEEEEecCcccccccccc----cCCccCceEEEeec-cCcc-----C
Q 039786 4 RQLRKLSIRPQ-NGNG---KDLCGLIANLKNLESLTVEMTSKEEILDLLSL----SSPPQYLQRLYLTG-NMKK-----L 69 (210)
Q Consensus 4 ~~L~~L~l~~~-~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~-~~~~-----~ 69 (210)
+.|+.|++++. .... ..+..++..-+.|+.|+|++|... +.....+ ..-. .|++|+|.. .+.. +
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig-d~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS-DSEARGLIELIETSP-SLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB-HHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC-hHHHHHHHHHHhcCC-ccCeEecCCCcCCHHHHHHH
Confidence 57899999741 2222 245677777789999999986543 2222222 2233 799999987 5542 2
Q ss_pred ChhhhcCCCccEEEEEeec---CCCcc----hhhhhcCCCccEEEec
Q 039786 70 PDWIFKLKNLIRLGLELSG---LAEEP----IRVLQASPNLLEILLT 109 (210)
Q Consensus 70 p~~~~~l~~L~~L~l~~~~---l~~~~----~~~l~~l~~L~~L~l~ 109 (210)
-..+..=+.|+.|+|++|. +.... ...+..-+.|..|+++
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 2233444679999998763 33322 1234556888888886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.92 E-value=86 Score=18.99 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=12.7
Q ss_pred CceEEEeeccCccCCh-hhhcCCCccEEEEE
Q 039786 56 YLQRLYLTGNMKKLPD-WIFKLKNLIRLGLE 85 (210)
Q Consensus 56 ~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~ 85 (210)
+|+.+.|...++.+-. .+..+.+|+.+.+.
T Consensus 21 ~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 21 VIREITVQPNIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TCCCEEECTTSSCCCTTSSTTCTTCCCEEEC
T ss_pred CCcEEEcCCchheEcHHHHhccCCccEEEEc
Confidence 4444444443333322 33444444444443
Done!