BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039790
(1395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 76/200 (38%), Gaps = 27/200 (13%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312
LRGH + +++ + L SAS D +W+I GP E GKIV A I
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKE-------GKIVDAKAIFTG 227
Query: 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372
+V V WH + + ++ L I R + S LV
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPS----------------HLV 271
Query: 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432
H E+ LS + LA+ S D TV +WD R L ++ H P
Sbjct: 272 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSP 329
Query: 433 HPQHIVLITGGPLNRELKIW 452
H + I+ +G +R L +W
Sbjct: 330 HNETILASSG--TDRRLNVW 347
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 20/162 (12%)
Query: 244 NIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303
N + L+ HT V ++F +LA+ S D +W+ L +
Sbjct: 262 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-------------LRNL 308
Query: 304 VVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKI-DSNRVGKGERFSAEEPLKCPV 362
+ + +V W PH + IL + +R L + D +++ GE SAE+ P
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI--GEEQSAEDAEDGPP 366
Query: 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIW 404
+ L + G H +I++ S + S S D +IW
Sbjct: 367 ELLF----IHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 76/200 (38%), Gaps = 27/200 (13%)
Query: 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312
LRGH + +++ + L SAS D +W+I GP E GKIV A I
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKE-------GKIVDAKAIFTG 227
Query: 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372
+V V WH + + ++ L I R + S LV
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPS----------------HLV 271
Query: 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432
H E+ LS + LA+ S D TV +WD R L ++ H P
Sbjct: 272 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSP 329
Query: 433 HPQHIVLITGGPLNRELKIW 452
H + I+ +G +R L +W
Sbjct: 330 HNETILASSG--TDRRLNVW 347
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 20/154 (12%)
Query: 252 LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311
L+ HT V ++F +LA+ S D +W+ L + + +
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-------------LRNLKLKLHTFE 316
Query: 312 DGDSVHPRVCWHPHKQEILMLAIGNRILKI-DSNRVGKGERFSAEEPLKCPVDELINGVQ 370
+V W PH + IL + +R L + D +++ GE SAE+ P + L
Sbjct: 317 SHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI--GEEQSAEDAEDGPPELLF---- 370
Query: 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIW 404
+ G H +I++ S + S S D ++IW
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 31/154 (20%)
Query: 251 SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310
+ L GH V +A+ A +LLA+ S D ++W + DEED+ + + + Q
Sbjct: 99 TTLEGHENEVKSVAW-APSGNLLATCSRDKSVWVWEV----DEEDEYECVSVLNSHTQ-- 151
Query: 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370
D H V WHP QE+L A + +K+ + EE D+ +
Sbjct: 152 ---DVKH--VVWHP-SQELLASASYDDTVKL----------YREEE------DDWVCCAT 189
Query: 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIW 404
L G H+ + L+ RLAS S D TV+IW
Sbjct: 190 LEG-HESTVWSLAF-DPSGQRLASCSDDRTVRIW 221
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
LASAS D TVK++ + + +GH + P Q + + +R ++I
Sbjct: 165 LASASYDDTVKLYREEEDD-WVCCATLEGHESTVWSLAFDPSGQRLASCSD---DRTVRI 220
Query: 452 WAS---AEEEGWLLPSDIESWKCTQTL 475
W E+G SWKC TL
Sbjct: 221 WRQYLPGNEQGVACSGSDPSWKCICTL 247
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 136
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 137 W------------DVKTGKCLKTLPAHS 152
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 221
Query: 452 W 452
W
Sbjct: 222 W 222
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 136
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 137 W------------DVKTGKCLKTLPAHS 152
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 221
Query: 452 W 452
W
Sbjct: 222 W 222
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 136
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 137 W------------DVKTGKCLKTLPAHS 152
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 221
Query: 452 W 452
W
Sbjct: 222 W 222
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 132
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 133 W------------DVKTGKCLKTLPAHS 148
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 217
Query: 452 W 452
W
Sbjct: 218 W 218
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 129
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 130 W------------DVKTGKCLKTLPAHS 145
Score = 33.5 bits (75), Expect = 0.89, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 160 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 214
Query: 452 W 452
W
Sbjct: 215 W 215
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 35.8 bits (81), Expect = 0.19, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 150
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 151 W------------DVKTGKCLKTLPAHS 166
Score = 33.5 bits (75), Expect = 0.95, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 181 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 235
Query: 452 W 452
W
Sbjct: 236 W 236
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 35.8 bits (81), Expect = 0.19, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 133
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 134 W------------DVKTGKCLKTLPAHS 149
Score = 33.5 bits (75), Expect = 0.95, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 218
Query: 452 W 452
W
Sbjct: 219 W 219
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 139
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 140 W------------DVKTGKCLKTLPAHS 155
Score = 33.5 bits (75), Expect = 0.97, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 224
Query: 452 W 452
W
Sbjct: 225 W 225
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 134
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 135 W------------DVKTGKCLKTLPAHS 150
Score = 33.5 bits (75), Expect = 0.95, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 219
Query: 452 W 452
W
Sbjct: 220 W 220
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 133
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 134 W------------DVKTGKCLKTLPAHS 149
Score = 33.5 bits (75), Expect = 0.95, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 218
Query: 452 W 452
W
Sbjct: 219 W 219
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 139
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 140 W------------DVKTGKCLKTLPAHS 155
Score = 33.5 bits (75), Expect = 0.96, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 224
Query: 452 W 452
W
Sbjct: 225 W 225
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 138
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 139 W------------DVKTGKCLKTLPAHS 154
Score = 33.5 bits (75), Expect = 0.97, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 223
Query: 452 W 452
W
Sbjct: 224 W 224
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 139
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 140 W------------DVKTGKCLKTLPAHS 155
Score = 33.1 bits (74), Expect = 0.99, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 224
Query: 452 W 452
W
Sbjct: 225 W 225
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 12/61 (19%)
Query: 375 HDGEITELSM---CQWLTTRLASASLDGTVKIWDDR----KSTPLAVLRPYDGHPVNCVT 427
H ++T +++ C W LA+AS+D TVKIWD R K++ L L P+ HPVN
Sbjct: 250 HKKKVTHVALNPCCDWF---LATASVDQTVKIWDLRQVRGKASFLYSL-PHR-HPVNAAC 304
Query: 428 F 428
F
Sbjct: 305 F 305
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 12/61 (19%)
Query: 375 HDGEITELSM---CQWLTTRLASASLDGTVKIWDDR----KSTPLAVLRPYDGHPVNCVT 427
H ++T +++ C W LA+AS+D TVKIWD R K++ L L P+ HPVN
Sbjct: 249 HKKKVTHVALNPCCDWF---LATASVDQTVKIWDLRQVRGKASFLYSL-PHR-HPVNAAC 303
Query: 428 F 428
F
Sbjct: 304 F 304
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 12/61 (19%)
Query: 375 HDGEITELSM---CQWLTTRLASASLDGTVKIWDDR----KSTPLAVLRPYDGHPVNCVT 427
H ++T +++ C W LA+AS+D TVKIWD R K++ L L P+ HPVN
Sbjct: 249 HKKKVTHVALNPCCDWF---LATASVDQTVKIWDLRQVRGKASFLYSL-PHR-HPVNAAC 303
Query: 428 F 428
F
Sbjct: 304 F 304
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 155
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 156 W------------DVKTGKCLKTLPAHS 171
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 240
Query: 452 W 452
W
Sbjct: 241 W 241
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 157
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ KC +TL S
Sbjct: 158 W------------DVKTGKCLKTLPAHS 173
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 242
Query: 452 W 452
W
Sbjct: 243 W 243
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449
T+ +S S D T KIW +PL L+ ++G V C F + +L+ G N E+
Sbjct: 1105 TKFSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDG-----ILLATGDDNGEI 1158
Query: 450 KIW 452
+IW
Sbjct: 1159 RIW 1161
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE------------EDKP 297
R+ + GHT V F +D LLAS S DG +W++ + ED P
Sbjct: 743 RNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 801
Query: 298 QILGKIVVAIQILADGDSV 316
+ + IV ADGD +
Sbjct: 802 EDVEVIVKCCSWSADGDKI 820
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHP--VNCVTFLIGPHPQHIVLITGGPLNR 447
+ +A+ S D VKIWD S ++ YD H VNC F H++L TG +
Sbjct: 677 SYIATCSADKKVKIWD---SATGKLVHTYDEHSEQVNCCHF--TNKSNHLLLATGSN-DF 730
Query: 448 ELKIWASAEEE 458
LK+W ++E
Sbjct: 731 FLKLWDLNQKE 741
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449
T+ +S S D T KIW +PL L+ ++G V C F + +L+ G N E+
Sbjct: 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDG-----ILLATGDDNGEI 1151
Query: 450 KIW 452
+IW
Sbjct: 1152 RIW 1154
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE------------EDKP 297
R+ + GHT V F +D LLAS S DG +W++ + ED P
Sbjct: 736 RNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794
Query: 298 QILGKIVVAIQILADGDSV 316
+ + IV ADGD +
Sbjct: 795 EDVEVIVKCCSWSADGDKI 813
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHP--VNCVTFLIGPHPQHIVLITGGPLNR 447
+ +A+ S D VKIWD S ++ YD H VNC F H++L TG +
Sbjct: 670 SYIATCSADKKVKIWD---SATGKLVHTYDEHSEQVNCCHF--TNKSNHLLLATGSN-DF 723
Query: 448 ELKIWASAEEE 458
LK+W ++E
Sbjct: 724 FLKLWDLNQKE 734
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.3 bits (77), Expect = 0.52, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ +LK+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNDLKL 221
Query: 452 W 452
W
Sbjct: 222 W 222
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 136
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ C +TL S
Sbjct: 137 W------------DVKTGMCLKTLPAHS 152
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 19/103 (18%)
Query: 252 LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ--- 308
L+ GHT V D+A+ + +++AS S D +W I PD G +V+ ++
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI---PD--------GGLVLPLREPV 124
Query: 309 ILADGDSVHPR-VCWHPHKQEILMLA-IGNRILKIDSNRVGKG 349
I +G + V WHP Q +L+ A N IL D VG G
Sbjct: 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD---VGTG 164
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 392 LASASLDGTVKIWDDR-KSTPLAVLRPYDG-HPVNCVTFLIG-PHPQHIVLITGGPLNRE 448
+ + S DGTVK+WD R K P+A + P G + +C T G + Q ++ G N +
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 449 LKI 451
+K+
Sbjct: 192 IKL 194
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 240 IRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290
+++ N+ LRS L GHT V+ +A + D L AS DG +W++ EG
Sbjct: 543 VKVWNLSNCKLRSTLAGHTGYVSTVAV-SPDGSLCASGGKDGVVLLWDLAEG 593
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 43/210 (20%)
Query: 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308
L+ +R HT VT +A ++ ++ SAS D +W +T ++DK + +
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLT----KDDKAYGVAQ------ 423
Query: 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368
R+ H H E ++L+ + S + + +L G
Sbjct: 424 ---------RRLTGHSHFVEDVVLSSDGQF------------ALSGSWDGELRLWDLAAG 462
Query: 369 V---QLVGKHDGEITELSMCQWLTTR-LASASLDGTVKIWDDRKSTPLAVLRPYDGH--P 422
V + VG H ++ LS+ L R + SAS D T+K+W+ + +GH
Sbjct: 463 VSTRRFVG-HTKDV--LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519
Query: 423 VNCVTFLIGPHPQHIVLITGGPLNRELKIW 452
V+CV F P+ +++ ++ +K+W
Sbjct: 520 VSCVRF--SPNTLQPTIVS-ASWDKTVKVW 546
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 19/103 (18%)
Query: 252 LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ--- 308
L+ GHT V D+A+ + +++AS S D +W I PD G +V+ ++
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI---PD--------GGLVLPLREPV 124
Query: 309 ILADGDSVHPR-VCWHPHKQEILMLA-IGNRILKIDSNRVGKG 349
I +G + V WHP Q +L+ A N IL D VG G
Sbjct: 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD---VGTG 164
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ +AS D T+KIWD + + +A L +GH N V+F + HP ++I+G + LKI
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATL---EGHMSN-VSFAVF-HPTLPIIISGSE-DGTLKI 254
Query: 452 WASA 455
W S+
Sbjct: 255 WNSS 258
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449
+ AS LD TVK+W +STP L VN V + P P +IT + +
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY--PLPDKPYMITASD-DLTI 210
Query: 450 KIWASAEEEGWLLPSDIESWKCTQTLE 476
KIW D ++ C TLE
Sbjct: 211 KIW------------DYQTKSCVATLE 225
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ +AS D T+KIWD + + +A L +GH N V+F + HP ++I+G + LKI
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATL---EGHMSN-VSFAVF-HPTLPIIISGSE-DGTLKI 254
Query: 452 WASA 455
W S+
Sbjct: 255 WNSS 258
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449
+ AS LD TVK+W +STP L VN V + P P +IT + +
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY--PLPDKPYMITASD-DLTI 210
Query: 450 KIWASAEEEGWLLPSDIESWKCTQTLE 476
KIW D ++ C TLE
Sbjct: 211 KIW------------DYQTKSCVATLE 225
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 33.5 bits (75), Expect = 0.82, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
R LRGH ++ M + D LL SAS DG+ IW+
Sbjct: 48 RRTLRGHLAKIYAM-HWGTDSRLLVSASQDGKLIIWD 83
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 33.5 bits (75), Expect = 0.82, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
R LRGH ++ M + D LL SAS DG+ IW+
Sbjct: 48 RRTLRGHLAKIYAM-HWGTDSRLLVSASQDGKLIIWD 83
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 33.5 bits (75), Expect = 0.85, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
R LRGH ++ M + D LL SAS DG+ IW+
Sbjct: 59 RRTLRGHLAKIYAM-HWGTDSRLLVSASQDGKLIIWD 94
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ S+S DG +IWD L L D PV+ V F P+ ++I+ T L+ LK+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAAT---LDNTLKL 221
Query: 452 W 452
W
Sbjct: 222 W 222
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
L SAS D T+KIWD L L+ + + V C F +PQ LI G + ++I
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNF----NPQS-NLIVSGSFDESVRI 136
Query: 452 WASAEEEGWLLPSDIESWKCTQTLELKS 479
W D+++ C +TL S
Sbjct: 137 W------------DVKTGMCLKTLPAHS 152
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
LAS S D T+K+WD + +R GH N + I P+ HIV ++ +K+
Sbjct: 165 LASCSADMTIKLWDFQ---GFECIRTMHGHDHNVSSVSIMPNGDHIV---SASRDKTIKM 218
Query: 452 W 452
W
Sbjct: 219 W 219
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ +AS D T+KIWD + + +A L +GH N V+F + HP ++I+G + LKI
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATL---EGHMSN-VSFAV-FHPTLPIIISGSE-DGTLKI 254
Query: 452 WASA 455
W S+
Sbjct: 255 WNSS 258
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
AS LD TVK+W +STP L VN V + P P +IT + +KI
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY--PLPDKPYMITASD-DLTIKI 212
Query: 452 WASAEEEGWLLPSDIESWKCTQTLE 476
W D ++ C TLE
Sbjct: 213 W------------DYQTKSCVATLE 225
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
R LRGH ++ M + D LL SAS DG+ IW+
Sbjct: 48 RRTLRGHLAKIYAM-HWGTDSRLLLSASQDGKLIIWD 83
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
R LRGH ++ M + D LL SAS DG+ IW+
Sbjct: 48 RRTLRGHLAKIYAM-HWGTDSRLLLSASQDGKLIIWD 83
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 372 VGKHDGEITELSMCQWLTT--RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429
+G G +E+ W + +LAS D V+IWD R S P ++ V V +
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWC 268
Query: 430 IGPHPQHIVLITGGPLNRELKIWASA 455
P +++ GG +++++ W +A
Sbjct: 269 --PWQSNLLATGGGTMDKQIHFWNAA 292
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 32/158 (20%)
Query: 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308
L +++ GH V +A+ + D + LA+ S D +IW E +E + I
Sbjct: 99 LLAIIEGHENEVKGVAW-SNDGYYLATCSRDKSVWIWETDESGEEYE----------CIS 147
Query: 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368
+L + V WHP E L+ + D+ R+ K ++ +C
Sbjct: 148 VLQEHSQDVKHVIWHP--SEALLASSSYD----DTVRIWK----DYDDDWEC-------- 189
Query: 369 VQLVGKHDGEI--TELSMCQWLTTRLASASLDGTVKIW 404
V ++ H+G + ++ + + RL S S D TV++W
Sbjct: 190 VAVLNGHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVW 226
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 26/113 (23%)
Query: 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLI-GPHPQ 435
G + + Q+ R+ S + D VK+WD T L L+ GH + G H
Sbjct: 237 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYSLQFDGIH-- 291
Query: 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL----ELKSSAELR 484
+ G L+ +++W D+E+ C TL L S EL+
Sbjct: 292 ----VVSGSLDTSIRVW------------DVETGNCIHTLTGHQSLTSGMELK 328
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
+ +AS D T+KIWD + + +A L +GH N V+F + HP ++I+G + LKI
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATL---EGHMSN-VSFAV-FHPTLPIIISGSE-DGTLKI 254
Query: 452 WASA 455
W S+
Sbjct: 255 WNSS 258
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451
AS LD TVK+W +STP L VN V + P P +IT + +KI
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY--PLPDKPYMITASD-DLTIKI 212
Query: 452 WASAEEEGWLLPSDIESWKCTQTLE 476
W D ++ C TLE
Sbjct: 213 W------------DYQTKSCVATLE 225
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450
+L S S D TV+IWD R L DG V+ P I G L+R ++
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS------PGDGKYIAAGSLDRAVR 232
Query: 451 IWASAEEEGWLL 462
+W S E G+L+
Sbjct: 233 VWDS--ETGFLV 242
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 252 LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295
LRGH + V D L S S DG +WNI G E+D
Sbjct: 1045 FLRGHQETVKDFRLLKNS--RLLSWSFDGTVKVWNIITGNKEKD 1086
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL----RPYDGHPVNCV 426
L+G H +T++++ + SASLDGT+++W+ T + P+DG VN +
Sbjct: 174 LIG-HRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG--VNSI 229
Query: 427 TFLIGPHPQ 435
+G Q
Sbjct: 230 ALFVGTDRQ 238
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL----RPYDGHPVNCV 426
L+G H +T++++ + SASLDGT+++W+ T + P+DG VN +
Sbjct: 177 LIG-HRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG--VNSI 232
Query: 427 TFLIGPHPQ 435
+G Q
Sbjct: 233 ALFVGTDRQ 241
>pdb|2VXG|A Chain A, Crystal Structure Of The Conserved C-Terminal Region Of Ge-
1
pdb|2VXG|B Chain B, Crystal Structure Of The Conserved C-Terminal Region Of Ge-
1
Length = 139
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
Query: 1262 LSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPXXXXXXXXXXXXXXXAC 1321
+ +L+ + +AF AL +D+ +V + D + +
Sbjct: 7 IKQLLMAGQINKAFHQALLANDLGLVEFTLRHTDSNQAFAPEGCRLEQKVLLSLIQQISA 66
Query: 1322 DISKETPRKLAWMTDVAVAINPADPMISMHVRPIFEQVYQ-ILGHQRNLPSTSASEANSI 1380
D++ K ++ + +AIN ADP+ H + ++Y+ +N P S+ +++
Sbjct: 67 DMTNHNELKQRYLNEALLAINMADPITREHAPKVLTELYRNCQQFIKNSPKN--SQFSNV 124
Query: 1381 RLLMHVI 1387
RLLM I
Sbjct: 125 RLLMKAI 131
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 242 ILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
+ N T L++L +GH + + + + +D HLL S+ D +WN
Sbjct: 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 244 NIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294
N + LR L GH VT +A A +LL SAS D W +T G D++
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQK 53
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 27/205 (13%)
Query: 228 RNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286
+N+I + G + + N +T+ ++ ++ H V + AF A + +A +D I+N
Sbjct: 78 KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAF-APNGQSVACGGLDSACSIFN 136
Query: 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV 346
++ D + G + V+ ++L + P ++ L+ G++ + V
Sbjct: 137 LSSQADRD------GNMPVS-RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWD--V 187
Query: 347 GKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD 406
G+R S I G + H ++ LS+ S S D TV++WD
Sbjct: 188 TTGQRIS------------IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 407 RKSTPLAVLRPYDGHP--VNCVTFL 429
R ++ +R Y GH +N V F
Sbjct: 236 RITSR--AVRTYHGHEGDINSVKFF 258
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 253 LRGHTQRVTDMAFFAEDVHL----LASASVDGRFFIWNITEGPDEEDKPQILGKI 303
L H+ V D+A+ A + L +AS S DGR FIW + P++L K
Sbjct: 208 LEAHSDWVRDVAW-APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 390 TRLASASLDGTVKIWDDRKSTPLAV--LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447
TRLA+ S D +VKI+D R + + LR ++G PV V + HP + ++ +R
Sbjct: 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-PVWQVAW---AHPMYGNILASCSYDR 81
Query: 448 ELKIWASAEEEG 459
++ IW EE G
Sbjct: 82 KVIIW--REENG 91
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 238 GNIRILNIIT--ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287
G IRI+N IT ++ + GH + ++ F D +LL S S D +WNI
Sbjct: 131 GIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 244 NIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294
N + LR L GH VT +A A +LL SAS D W +T G D++
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQK 53
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 244 NIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294
N + LR L GH VT +A A +LL SAS D W +T G D++
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQK 53
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 244 NIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294
N + LR L GH VT +A A +LL SAS D W +T G D++
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQK 53
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 244 NIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294
N + LR L GH VT +A A +LL SAS D W +T G D++
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQK 53
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 238 GNIRILNIIT--ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287
G IRI+N IT ++ + GH + ++ F D +LL S S D +WNI
Sbjct: 95 GIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 238 GNIRILNIIT--ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287
G IRI+N IT ++ + GH + ++ F D +LL S S D +WNI
Sbjct: 94 GIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 238 GNIRILNIIT--ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287
G IRI+N IT ++ + GH + ++ F D +LL S S D +WNI
Sbjct: 94 GIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 12/61 (19%)
Query: 375 HDGEITELSM---CQWLTTRLASASLDGTVKIWDDR----KSTPLAVLRPYDGHPVNCVT 427
H ++T C WL +A++S+D TVK+WD R K++ +A + P++ PVN
Sbjct: 202 HKAKVTHAEFNPRCDWL---MATSSVDATVKLWDLRNIKDKNSYIAEM-PHE-KPVNAAY 256
Query: 428 F 428
F
Sbjct: 257 F 257
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 37/177 (20%)
Query: 322 WHPHKQEILMLAIGNRILKI-DSNRVGKGERFSAEEPL-----------KCPVDELING- 368
W+PH + + ++ LK+ D+N + + F+ EE + C V G
Sbjct: 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP 166
Query: 369 -VQLVG-----------KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAVL 415
VQL H EI +S LA+AS D VK+WD R+ S L L
Sbjct: 167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITL 226
Query: 416 RPYDGHPVNCVTFLIGPH----------PQHIVLITGGPLNRELKIWASAEEEGWLL 462
++G V H + L+T G NR +++W S+ E L+
Sbjct: 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLV 282
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 12/61 (19%)
Query: 375 HDGEITELSM---CQWLTTRLASASLDGTVKIWDDR----KSTPLAVLRPYDGHPVNCVT 427
H ++T C WL +A++S+D TVK+WD R K++ +A + P++ PVN
Sbjct: 203 HKAKVTHAEFNPRCDWL---MATSSVDATVKLWDLRNIKDKNSYIAEM-PHE-KPVNAAY 257
Query: 428 F 428
F
Sbjct: 258 F 258
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 238 GNIRILNIIT--ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287
G IRI+N IT ++ + GH + ++ F D +LL S S D +WNI
Sbjct: 90 GIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
>pdb|1MC4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Vibrio Cholerae El Tor
pdb|3PZR|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Nadp And Product
Of S-Carbamoyl-L-Cysteine
pdb|3PZR|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Nadp And Product
Of S-Carbamoyl-L-Cysteine
pdb|3Q0E|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Product Of
S-Allyl-L-Cysteine Sulfoxide
pdb|3Q0E|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Product Of
S-Allyl-L-Cysteine Sulfoxide
pdb|1MB4|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Vibrio Cholerae With Nadp And S-methyl-l-cysteine
Sulfoxide
pdb|1MB4|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Vibrio Cholerae With Nadp And S-methyl-l-cysteine
Sulfoxide
Length = 370
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 1161 MFEQIDSTFQKGLIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADGQRKL 1220
M + +++GL++ +A+ ++ A A +R+ I+ I +S ELA+ +
Sbjct: 139 MLMALGGLYERGLVEWMSAMT--YQAASGAGAQNMRELISQMGVINDAVSSELANPASSI 196
Query: 1221 LAMAAAGANTKTGTSLVTQSSNGPLAG 1247
L + A T S T + PLAG
Sbjct: 197 LDIDKKVAETMRSGSFPTDNFGVPLAG 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,563,872
Number of Sequences: 62578
Number of extensions: 1219978
Number of successful extensions: 2461
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 2238
Number of HSP's gapped (non-prelim): 270
length of query: 1395
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1284
effective length of database: 8,027,179
effective search space: 10306897836
effective search space used: 10306897836
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)