Query 039790
Match_columns 1395
No_of_seqs 892 out of 4518
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 13:13:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1916 Nuclear protein, conta 100.0 7E-113 2E-117 1001.8 40.7 1123 167-1395 135-1283(1283)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-37 2.4E-42 341.0 26.8 327 207-600 106-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 1.5E-37 3.3E-42 340.0 26.8 312 152-562 121-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-35 4.8E-40 327.9 21.7 275 151-516 180-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 6.5E-34 1.4E-38 316.3 22.7 280 213-562 172-458 (459)
6 KOG0279 G protein beta subunit 100.0 1.8E-31 3.8E-36 283.6 29.8 284 157-518 27-313 (315)
7 KOG0291 WD40-repeat-containing 100.0 2.8E-29 6E-34 294.9 43.5 427 152-615 61-563 (893)
8 KOG0263 Transcription initiati 100.0 3.7E-31 8E-36 315.3 24.2 250 207-519 369-650 (707)
9 KOG0315 G-protein beta subunit 100.0 9.7E-30 2.1E-34 265.8 29.3 273 158-521 10-291 (311)
10 KOG0286 G-protein beta subunit 100.0 3.1E-29 6.8E-34 267.6 32.6 295 205-562 44-343 (343)
11 KOG0273 Beta-transducin family 100.0 1.1E-29 2.5E-34 285.6 29.4 246 216-521 235-485 (524)
12 KOG0286 G-protein beta subunit 100.0 3E-29 6.6E-34 267.7 30.6 274 152-516 61-343 (343)
13 KOG0318 WD40 repeat stress pro 100.0 1.1E-27 2.3E-32 272.5 42.2 358 210-615 184-573 (603)
14 KOG0279 G protein beta subunit 100.0 7.5E-29 1.6E-33 263.7 30.2 249 208-521 7-265 (315)
15 KOG0295 WD40 repeat-containing 100.0 1.7E-29 3.7E-34 276.6 23.9 268 159-516 121-404 (406)
16 KOG0263 Transcription initiati 100.0 1.9E-29 4.1E-34 300.7 26.0 264 152-457 384-651 (707)
17 KOG0319 WD40-repeat-containing 100.0 2.6E-28 5.7E-33 287.3 29.5 395 145-615 104-590 (775)
18 KOG0319 WD40-repeat-containing 100.0 5E-28 1.1E-32 284.9 28.9 314 159-521 251-580 (775)
19 KOG0284 Polyadenylation factor 100.0 2.6E-29 5.7E-34 278.3 16.3 278 151-518 101-380 (464)
20 KOG0306 WD40-repeat-containing 100.0 4.5E-27 9.8E-32 276.3 35.8 392 154-616 73-636 (888)
21 KOG0273 Beta-transducin family 100.0 1.4E-27 3.1E-32 268.7 29.3 274 152-518 241-523 (524)
22 KOG0295 WD40 repeat-containing 100.0 2.1E-28 4.5E-33 268.1 21.2 292 207-562 99-404 (406)
23 KOG0281 Beta-TrCP (transducin 100.0 3E-29 6.6E-34 271.3 14.4 237 215-523 196-433 (499)
24 KOG0296 Angio-associated migra 100.0 9.3E-27 2E-31 255.6 31.9 337 207-602 55-398 (399)
25 KOG0291 WD40-repeat-containing 100.0 8.1E-27 1.8E-31 274.3 32.7 305 159-520 278-614 (893)
26 KOG0645 WD40 repeat protein [G 100.0 1.7E-26 3.7E-31 244.7 30.7 279 158-518 27-311 (312)
27 KOG0281 Beta-TrCP (transducin 100.0 7.7E-29 1.7E-33 268.2 12.6 300 132-522 181-481 (499)
28 KOG0315 G-protein beta subunit 100.0 8.9E-27 1.9E-31 243.7 27.5 259 167-482 40-303 (311)
29 KOG0265 U5 snRNP-specific prot 100.0 9.3E-27 2E-31 249.9 26.7 259 206-519 37-297 (338)
30 KOG0285 Pleiotropic regulator 100.0 2.9E-27 6.3E-32 257.6 22.8 251 207-522 142-393 (460)
31 KOG0266 WD40 repeat-containing 100.0 1.5E-26 3.3E-31 284.1 32.1 249 215-521 158-412 (456)
32 KOG0316 Conserved WD40 repeat- 100.0 1.1E-26 2.4E-31 241.1 24.0 253 206-521 7-260 (307)
33 KOG0276 Vesicle coat complex C 100.0 3.9E-27 8.4E-32 271.6 22.6 251 210-519 7-258 (794)
34 KOG0645 WD40 repeat protein [G 99.9 2.5E-25 5.5E-30 235.9 32.3 249 207-520 5-263 (312)
35 cd00200 WD40 WD40 domain, foun 99.9 2.2E-25 4.8E-30 252.3 34.1 249 209-520 2-251 (289)
36 KOG0292 Vesicle coat complex C 99.9 1.1E-25 2.3E-30 267.6 31.9 324 152-566 15-350 (1202)
37 KOG0284 Polyadenylation factor 99.9 3E-27 6.5E-32 262.0 17.1 278 216-562 96-378 (464)
38 KOG0266 WD40 repeat-containing 99.9 8.8E-26 1.9E-30 277.4 30.8 282 167-518 159-454 (456)
39 KOG0293 WD40 repeat-containing 99.9 3.7E-26 8E-31 253.0 22.4 258 204-521 212-473 (519)
40 KOG0282 mRNA splicing factor [ 99.9 6.6E-27 1.4E-31 264.8 16.7 292 205-562 203-503 (503)
41 KOG0318 WD40 repeat stress pro 99.9 2.6E-24 5.6E-29 245.2 36.8 264 208-523 51-355 (603)
42 KOG0265 U5 snRNP-specific prot 99.9 2.3E-25 5.1E-30 239.2 26.1 276 152-516 53-336 (338)
43 cd00200 WD40 WD40 domain, foun 99.9 1.6E-24 3.5E-29 245.2 34.5 274 152-516 15-289 (289)
44 KOG0285 Pleiotropic regulator 99.9 2E-25 4.3E-30 243.4 25.1 282 153-519 158-440 (460)
45 PLN00181 protein SPA1-RELATED; 99.9 2.2E-24 4.8E-29 283.8 40.1 291 152-517 489-792 (793)
46 PLN00181 protein SPA1-RELATED; 99.9 4E-24 8.7E-29 281.3 39.0 250 212-519 479-739 (793)
47 KOG0313 Microtubule binding pr 99.9 1.3E-24 2.9E-29 239.5 27.0 279 159-517 116-417 (423)
48 KOG0275 Conserved WD40 repeat- 99.9 5.8E-26 1.3E-30 243.6 14.6 275 214-599 211-506 (508)
49 PTZ00421 coronin; Provisional 99.9 4.2E-23 9.1E-28 253.1 41.5 295 217-569 21-336 (493)
50 KOG0277 Peroxisomal targeting 99.9 8.4E-25 1.8E-29 229.7 20.5 268 184-517 35-308 (311)
51 KOG0292 Vesicle coat complex C 99.9 1.3E-24 2.8E-29 258.4 24.3 287 210-565 3-322 (1202)
52 KOG0293 WD40 repeat-containing 99.9 9.1E-25 2E-29 242.0 21.4 252 206-519 259-514 (519)
53 KOG0313 Microtubule binding pr 99.9 4.9E-24 1.1E-28 235.1 26.4 305 214-563 103-417 (423)
54 KOG0276 Vesicle coat complex C 99.9 2.5E-24 5.5E-29 248.6 24.5 246 207-512 46-293 (794)
55 KOG0296 Angio-associated migra 99.9 1.3E-23 2.8E-28 231.0 28.2 294 152-518 70-398 (399)
56 KOG1407 WD40 repeat protein [F 99.9 1.5E-23 3.3E-28 221.2 25.9 286 210-564 14-311 (313)
57 PTZ00420 coronin; Provisional 99.9 6.2E-23 1.4E-27 252.4 35.5 275 234-566 50-336 (568)
58 KOG0306 WD40-repeat-containing 99.9 7.2E-24 1.6E-28 249.6 25.8 256 207-517 405-663 (888)
59 KOG0274 Cdc4 and related F-box 99.9 1.4E-23 2.9E-28 257.6 28.9 243 208-522 240-486 (537)
60 KOG0316 Conserved WD40 repeat- 99.9 1.8E-23 3.8E-28 217.4 23.5 272 152-516 23-297 (307)
61 KOG0640 mRNA cleavage stimulat 99.9 5.6E-24 1.2E-28 228.1 19.3 259 210-520 106-385 (430)
62 KOG0274 Cdc4 and related F-box 99.9 2.2E-23 4.8E-28 255.6 27.4 278 215-569 207-487 (537)
63 KOG0282 mRNA splicing factor [ 99.9 2.3E-24 4.9E-29 244.3 15.9 275 154-516 223-503 (503)
64 KOG0283 WD40 repeat-containing 99.9 1.7E-23 3.8E-28 252.3 22.4 244 214-519 265-577 (712)
65 KOG0278 Serine/threonine kinas 99.9 1.3E-23 2.7E-28 219.9 17.7 285 210-566 8-299 (334)
66 KOG0305 Anaphase promoting com 99.9 9.5E-23 2.1E-27 241.2 26.2 241 216-519 217-462 (484)
67 KOG0289 mRNA splicing factor [ 99.9 1.9E-22 4.1E-27 225.5 26.0 251 207-517 252-505 (506)
68 KOG0310 Conserved WD40 repeat- 99.9 1.2E-22 2.6E-27 231.0 23.1 262 215-547 25-289 (487)
69 KOG0308 Conserved WD40 repeat- 99.9 6.8E-23 1.5E-27 238.6 21.3 287 158-519 37-328 (735)
70 KOG0772 Uncharacterized conser 99.9 1.5E-22 3.2E-27 229.9 23.1 291 152-516 173-485 (641)
71 PTZ00421 coronin; Provisional 99.9 2.8E-21 6.2E-26 237.0 36.2 246 157-457 31-292 (493)
72 KOG0300 WD40 repeat-containing 99.9 2.5E-22 5.5E-27 215.5 23.3 324 207-603 139-477 (481)
73 KOG0973 Histone transcription 99.9 1.8E-22 3.9E-27 248.8 25.2 301 152-520 19-357 (942)
74 KOG0643 Translation initiation 99.9 2.9E-22 6.4E-27 212.0 22.4 269 206-519 42-318 (327)
75 KOG0277 Peroxisomal targeting 99.9 4.6E-23 9.9E-28 216.7 16.0 232 159-454 74-308 (311)
76 KOG0275 Conserved WD40 repeat- 99.9 1.2E-22 2.7E-27 218.2 18.1 285 152-516 219-507 (508)
77 KOG0283 WD40 repeat-containing 99.9 3.1E-22 6.7E-27 241.6 23.5 273 152-457 273-578 (712)
78 KOG0308 Conserved WD40 repeat- 99.9 9.3E-23 2E-27 237.4 18.1 244 226-519 35-286 (735)
79 KOG0264 Nucleosome remodeling 99.9 6.3E-22 1.4E-26 224.1 23.5 267 213-518 121-404 (422)
80 KOG0301 Phospholipase A2-activ 99.9 1E-21 2.3E-26 230.5 24.8 262 159-520 26-290 (745)
81 KOG0294 WD40 repeat-containing 99.9 5.5E-21 1.2E-25 206.8 28.2 251 203-520 30-283 (362)
82 KOG0639 Transducin-like enhanc 99.9 1.9E-21 4.1E-26 219.6 25.4 277 214-563 417-703 (705)
83 KOG1408 WD40 repeat protein [F 99.9 8.1E-22 1.7E-26 229.8 21.6 302 159-519 393-714 (1080)
84 KOG0288 WD40 repeat protein Ti 99.9 3.7E-22 8E-27 222.3 17.2 274 152-515 181-458 (459)
85 KOG0299 U3 snoRNP-associated p 99.9 4.7E-21 1E-25 216.5 25.5 274 209-542 135-430 (479)
86 KOG0772 Uncharacterized conser 99.9 2.8E-21 6.1E-26 219.6 23.3 317 245-602 155-488 (641)
87 KOG0288 WD40 repeat protein Ti 99.9 5.5E-22 1.2E-26 220.9 16.9 289 204-561 163-458 (459)
88 KOG0301 Phospholipase A2-activ 99.9 4E-21 8.6E-26 225.7 24.8 277 208-565 6-289 (745)
89 KOG0264 Nucleosome remodeling 99.9 4.5E-21 9.8E-26 217.2 23.9 251 152-456 131-405 (422)
90 KOG0300 WD40 repeat-containing 99.9 4.1E-21 8.9E-26 206.3 21.9 255 206-520 180-478 (481)
91 PTZ00420 coronin; Provisional 99.9 3.2E-20 6.9E-25 228.6 33.1 210 207-457 65-295 (568)
92 KOG0643 Translation initiation 99.9 3.6E-20 7.9E-25 196.3 28.4 295 211-565 5-318 (327)
93 KOG0278 Serine/threonine kinas 99.9 1.1E-21 2.3E-26 205.5 16.3 252 205-522 48-301 (334)
94 KOG0289 mRNA splicing factor [ 99.9 9E-21 2E-25 212.1 24.7 238 217-516 220-460 (506)
95 KOG0641 WD40 repeat protein [G 99.9 1.2E-19 2.7E-24 187.0 30.8 296 208-563 25-348 (350)
96 KOG1332 Vesicle coat complex C 99.9 2.2E-21 4.7E-26 203.2 17.7 255 213-518 8-286 (299)
97 KOG1407 WD40 repeat protein [F 99.9 6.1E-20 1.3E-24 194.2 26.9 274 145-509 19-293 (313)
98 KOG0973 Histone transcription 99.9 1.5E-20 3.2E-25 232.0 24.7 301 215-568 12-359 (942)
99 KOG1446 Histone H3 (Lys4) meth 99.9 5.4E-19 1.2E-23 192.8 32.7 252 208-521 6-265 (311)
100 KOG0269 WD40 repeat-containing 99.9 2.6E-21 5.7E-26 229.4 15.2 244 219-519 90-341 (839)
101 KOG0310 Conserved WD40 repeat- 99.9 4.2E-20 9.1E-25 210.4 23.9 247 210-519 62-310 (487)
102 KOG0640 mRNA cleavage stimulat 99.9 2E-20 4.4E-25 201.0 19.7 297 249-600 104-424 (430)
103 KOG0647 mRNA export protein (c 99.9 1.2E-19 2.7E-24 195.4 25.5 267 152-507 33-312 (347)
104 KOG4283 Transcription-coupled 99.9 5.8E-20 1.2E-24 196.5 22.5 218 213-524 40-282 (397)
105 KOG0299 U3 snoRNP-associated p 99.8 8.6E-20 1.9E-24 206.4 24.6 296 152-519 148-458 (479)
106 KOG1446 Histone H3 (Lys4) meth 99.8 1.5E-18 3.2E-23 189.4 32.2 278 152-519 20-304 (311)
107 KOG0641 WD40 repeat protein [G 99.8 2.3E-18 5E-23 177.7 31.6 258 209-518 82-349 (350)
108 KOG0268 Sof1-like rRNA process 99.8 1.5E-20 3.2E-25 206.4 16.5 282 209-565 59-346 (433)
109 KOG0268 Sof1-like rRNA process 99.8 1.2E-20 2.6E-25 207.0 15.8 265 159-519 80-346 (433)
110 KOG0305 Anaphase promoting com 99.8 2.2E-19 4.8E-24 212.8 25.8 270 222-566 183-463 (484)
111 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.1E-18 1.3E-22 195.9 37.1 270 159-521 2-282 (300)
112 KOG0294 WD40 repeat-containing 99.8 3.8E-19 8.2E-24 192.7 24.2 231 155-457 50-283 (362)
113 KOG1332 Vesicle coat complex C 99.8 1.3E-19 2.9E-24 190.0 19.5 247 151-457 16-288 (299)
114 KOG1408 WD40 repeat protein [F 99.8 7.9E-19 1.7E-23 205.1 27.8 303 219-567 327-716 (1080)
115 KOG2096 WD40 repeat protein [G 99.8 2.7E-19 5.8E-24 193.3 21.7 251 209-517 79-401 (420)
116 KOG0303 Actin-binding protein 99.8 1.8E-19 4E-24 199.7 20.3 286 226-567 42-340 (472)
117 KOG1274 WD40 repeat protein [G 99.8 1.2E-18 2.7E-23 210.7 29.0 244 214-519 11-263 (933)
118 KOG2445 Nuclear pore complex c 99.8 2.5E-18 5.4E-23 185.8 27.2 280 213-520 10-320 (361)
119 KOG1539 WD repeat protein [Gen 99.8 9.2E-18 2E-22 201.0 34.0 339 207-611 193-615 (910)
120 KOG0267 Microtubule severing p 99.8 1.8E-20 3.9E-25 220.6 9.1 237 211-510 23-260 (825)
121 KOG2445 Nuclear pore complex c 99.8 3.8E-18 8.3E-23 184.3 26.2 275 150-481 17-335 (361)
122 KOG1063 RNA polymerase II elon 99.8 3.5E-18 7.7E-23 200.9 27.2 320 159-520 207-650 (764)
123 KOG1036 Mitotic spindle checkp 99.8 6.1E-18 1.3E-22 183.5 25.9 264 152-508 19-294 (323)
124 KOG4328 WD40 protein [Function 99.8 2.3E-18 4.9E-23 194.6 23.0 264 208-520 178-452 (498)
125 KOG2096 WD40 repeat protein [G 99.8 6.2E-18 1.3E-22 182.9 24.3 306 250-599 79-399 (420)
126 KOG0646 WD40 repeat protein [G 99.8 1.4E-18 3E-23 197.1 19.3 225 155-429 90-328 (476)
127 KOG1063 RNA polymerase II elon 99.8 2.9E-17 6.2E-22 193.4 30.5 305 205-566 180-650 (764)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.4E-16 2.9E-21 184.6 36.0 234 228-520 1-239 (300)
129 KOG0639 Transducin-like enhanc 99.8 3E-17 6.6E-22 185.9 28.8 236 215-518 464-704 (705)
130 KOG1036 Mitotic spindle checkp 99.8 1.5E-17 3.2E-22 180.6 25.1 270 216-544 13-283 (323)
131 KOG1273 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 180.8 23.1 255 219-521 26-283 (405)
132 KOG0321 WD40 repeat-containing 99.8 6.5E-18 1.4E-22 197.1 22.9 319 210-566 41-393 (720)
133 KOG0647 mRNA export protein (c 99.8 3.2E-17 7E-22 177.0 26.1 251 215-519 26-282 (347)
134 KOG0646 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 188.9 24.2 250 228-519 50-308 (476)
135 KOG2055 WD40 repeat protein [G 99.8 3E-17 6.6E-22 185.6 23.9 250 216-519 213-468 (514)
136 KOG1539 WD repeat protein [Gen 99.8 1.4E-16 2.9E-21 191.1 30.1 345 207-600 235-646 (910)
137 KOG0270 WD40 repeat-containing 99.8 1.9E-17 4E-22 186.9 21.1 237 227-521 191-452 (463)
138 KOG0270 WD40 repeat-containing 99.8 1.7E-17 3.7E-22 187.3 19.4 252 158-457 192-451 (463)
139 KOG0267 Microtubule severing p 99.8 1.2E-18 2.5E-23 205.6 9.7 196 207-443 61-257 (825)
140 KOG0269 WD40 repeat-containing 99.8 1.9E-17 4E-22 197.1 19.0 243 220-519 43-297 (839)
141 KOG2048 WD40 repeat protein [G 99.8 8.2E-16 1.8E-20 181.4 32.1 248 212-521 21-278 (691)
142 KOG2048 WD40 repeat protein [G 99.7 2.1E-15 4.5E-20 178.0 33.8 397 156-606 35-509 (691)
143 KOG0302 Ribosome Assembly prot 99.7 5.3E-17 1.2E-21 179.6 18.5 210 214-457 149-380 (440)
144 KOG0302 Ribosome Assembly prot 99.7 7.8E-17 1.7E-21 178.3 18.9 228 253-522 147-382 (440)
145 KOG0307 Vesicle coat complex C 99.7 9E-18 2E-22 208.3 12.8 240 159-457 81-329 (1049)
146 KOG0650 WD40 repeat nucleolar 99.7 2.7E-16 5.8E-21 182.2 22.3 309 204-562 388-733 (733)
147 KOG4378 Nuclear protein COP1 [ 99.7 2.2E-16 4.7E-21 179.1 21.1 230 209-500 74-305 (673)
148 KOG2055 WD40 repeat protein [G 99.7 4.6E-16 1E-20 176.2 23.2 280 152-518 219-512 (514)
149 KOG0321 WD40 repeat-containing 99.7 4.9E-16 1.1E-20 181.6 23.7 322 159-540 65-419 (720)
150 KOG2106 Uncharacterized conser 99.7 9.4E-15 2E-19 166.7 33.2 268 216-561 246-518 (626)
151 KOG0307 Vesicle coat complex C 99.7 2.6E-17 5.7E-22 204.2 13.3 247 217-521 65-330 (1049)
152 KOG4283 Transcription-coupled 99.7 1.5E-15 3.2E-20 163.1 23.1 302 157-517 55-364 (397)
153 KOG0642 Cell-cycle nuclear pro 99.7 1.8E-16 4E-21 183.6 17.3 255 153-479 301-573 (577)
154 KOG1274 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 184.8 25.1 249 152-439 19-285 (933)
155 KOG2106 Uncharacterized conser 99.7 2E-14 4.3E-19 164.1 32.1 348 208-615 96-491 (626)
156 KOG2919 Guanine nucleotide-bin 99.7 1.4E-15 2.9E-20 165.5 21.3 255 217-519 50-328 (406)
157 KOG1587 Cytoplasmic dynein int 99.7 3.2E-15 6.9E-20 182.6 26.8 263 216-519 242-517 (555)
158 KOG2919 Guanine nucleotide-bin 99.7 3.2E-15 6.9E-20 162.6 23.4 283 152-507 55-359 (406)
159 KOG1273 WD40 repeat protein [G 99.7 2.3E-15 4.9E-20 163.1 22.2 280 153-520 30-324 (405)
160 KOG4378 Nuclear protein COP1 [ 99.7 1.7E-15 3.7E-20 171.9 20.8 237 219-521 37-283 (673)
161 COG2319 FOG: WD40 repeat [Gene 99.7 3.9E-13 8.4E-18 160.1 42.2 315 218-603 111-443 (466)
162 KOG0649 WD40 repeat protein [G 99.7 3.7E-15 7.9E-20 156.4 20.9 244 217-519 11-275 (325)
163 KOG1034 Transcriptional repres 99.7 2E-15 4.4E-20 164.8 19.0 268 215-517 88-382 (385)
164 KOG1034 Transcriptional repres 99.7 6.3E-15 1.4E-19 160.9 22.1 309 252-602 33-383 (385)
165 KOG4328 WD40 protein [Function 99.7 6E-15 1.3E-19 167.2 22.7 256 207-518 225-495 (498)
166 COG2319 FOG: WD40 repeat [Gene 99.7 4.6E-13 9.9E-18 159.5 39.5 331 211-613 60-411 (466)
167 KOG0650 WD40 repeat nucleolar 99.7 8E-15 1.7E-19 170.2 22.6 228 249-521 392-640 (733)
168 KOG1009 Chromatin assembly com 99.6 2.3E-14 5E-19 160.6 24.1 300 160-520 28-374 (434)
169 KOG1538 Uncharacterized conser 99.6 1E-14 2.2E-19 169.9 20.1 269 176-519 20-294 (1081)
170 KOG0644 Uncharacterized conser 99.6 8.5E-16 1.8E-20 183.3 11.1 268 206-522 180-472 (1113)
171 KOG1007 WD repeat protein TSSC 99.6 3.5E-14 7.5E-19 152.5 21.3 266 210-518 57-361 (370)
172 KOG4227 WD40 repeat protein [G 99.6 5E-14 1.1E-18 155.7 20.5 260 209-521 49-325 (609)
173 KOG1188 WD40 repeat protein [G 99.6 3.3E-14 7.2E-19 156.3 18.9 191 229-457 41-244 (376)
174 KOG0303 Actin-binding protein 99.6 7.8E-14 1.7E-18 155.4 22.0 205 211-457 76-296 (472)
175 KOG1009 Chromatin assembly com 99.6 4.3E-14 9.3E-19 158.5 18.8 174 216-457 13-197 (434)
176 KOG0642 Cell-cycle nuclear pro 99.6 2.4E-14 5.3E-19 166.2 15.8 259 209-519 287-562 (577)
177 KOG1445 Tumor-specific antigen 99.6 5.3E-14 1.2E-18 163.2 18.0 258 224-538 587-860 (1012)
178 KOG1240 Protein kinase contain 99.6 8.9E-13 1.9E-17 164.0 29.1 277 204-520 1036-1336(1431)
179 KOG1523 Actin-related protein 99.5 5.1E-13 1.1E-17 146.0 22.0 208 215-457 9-238 (361)
180 KOG0322 G-protein beta subunit 99.5 6.2E-14 1.3E-18 149.2 14.5 268 207-517 5-322 (323)
181 KOG1188 WD40 repeat protein [G 99.5 3.9E-13 8.6E-18 148.0 20.4 289 159-518 41-346 (376)
182 PRK11028 6-phosphogluconolacto 99.5 1.1E-11 2.5E-16 146.9 34.1 254 217-519 35-305 (330)
183 KOG1445 Tumor-specific antigen 99.5 2E-13 4.4E-18 158.5 17.9 229 238-519 55-294 (1012)
184 KOG1963 WD40 repeat protein [G 99.5 9.3E-12 2E-16 152.0 32.6 307 214-566 203-540 (792)
185 KOG0649 WD40 repeat protein [G 99.5 2E-12 4.3E-17 136.2 22.6 260 259-564 12-274 (325)
186 KOG1538 Uncharacterized conser 99.5 9.3E-13 2E-17 153.8 21.4 275 218-567 14-296 (1081)
187 KOG1517 Guanine nucleotide bin 99.5 3.1E-12 6.7E-17 156.8 26.0 299 218-604 1066-1383(1387)
188 KOG1334 WD40 repeat protein [G 99.5 3.8E-13 8.2E-18 153.6 16.9 313 207-566 133-468 (559)
189 KOG0290 Conserved WD40 repeat- 99.5 1.1E-12 2.4E-17 141.3 19.2 199 215-451 149-361 (364)
190 KOG1310 WD40 repeat protein [G 99.5 3E-13 6.4E-18 155.6 15.2 242 210-522 44-307 (758)
191 KOG4227 WD40 repeat protein [G 99.5 2.5E-12 5.4E-17 142.4 21.8 302 152-517 62-386 (609)
192 PRK01742 tolB translocation pr 99.5 2.7E-12 5.9E-17 157.5 24.2 214 210-481 197-417 (429)
193 KOG1963 WD40 repeat protein [G 99.5 1.5E-11 3.3E-16 150.2 29.8 313 152-519 211-539 (792)
194 KOG2110 Uncharacterized conser 99.5 7.1E-11 1.5E-15 131.8 31.6 197 218-457 48-250 (391)
195 PRK11028 6-phosphogluconolacto 99.5 4.7E-11 1E-15 141.7 32.4 239 234-519 8-259 (330)
196 KOG1524 WD40 repeat-containing 99.5 8E-13 1.7E-17 151.7 16.2 210 229-517 76-285 (737)
197 KOG1240 Protein kinase contain 99.5 1.1E-11 2.5E-16 154.4 27.2 272 131-459 1034-1338(1431)
198 PRK01742 tolB translocation pr 99.5 5.1E-12 1.1E-16 155.1 24.3 211 237-518 183-401 (429)
199 KOG1916 Nuclear protein, conta 99.5 8.2E-12 1.8E-16 150.7 24.5 187 237-456 110-324 (1283)
200 KOG1517 Guanine nucleotide bin 99.4 1.2E-11 2.7E-16 151.6 24.5 286 159-520 1077-1383(1387)
201 KOG1334 WD40 repeat protein [G 99.4 2.7E-12 5.8E-17 146.8 16.4 315 249-609 134-473 (559)
202 KOG0322 G-protein beta subunit 99.4 5.1E-12 1.1E-16 134.8 17.1 170 257-454 150-322 (323)
203 KOG0290 Conserved WD40 repeat- 99.4 1.7E-11 3.7E-16 132.3 20.7 264 208-520 37-320 (364)
204 KOG1007 WD repeat protein TSSC 99.4 1.2E-11 2.6E-16 133.2 19.2 211 208-456 114-362 (370)
205 KOG0644 Uncharacterized conser 99.4 7.7E-13 1.7E-17 158.4 10.8 248 158-457 202-470 (1113)
206 KOG2139 WD40 repeat protein [G 99.4 1.8E-10 3.9E-15 127.8 27.8 321 216-576 98-433 (445)
207 KOG0771 Prolactin regulatory e 99.4 5.2E-12 1.1E-16 143.3 16.2 201 220-456 148-355 (398)
208 KOG1587 Cytoplasmic dynein int 99.4 2.2E-11 4.7E-16 149.2 22.6 250 155-457 252-518 (555)
209 KOG1272 WD40-repeat-containing 99.3 2.9E-12 6.3E-17 145.7 9.1 229 219-516 132-360 (545)
210 KOG2394 WD40 protein DMR-N9 [G 99.3 2.9E-10 6.3E-15 131.7 25.3 192 226-484 183-379 (636)
211 PRK03629 tolB translocation pr 99.3 4E-10 8.7E-15 138.2 26.8 205 205-455 187-406 (429)
212 KOG1524 WD40 repeat-containing 99.3 1.2E-09 2.5E-14 126.2 27.6 185 209-451 97-282 (737)
213 PRK03629 tolB translocation pr 99.2 3E-09 6.4E-14 130.6 30.4 214 238-518 179-406 (429)
214 PRK04922 tolB translocation pr 99.2 1.4E-09 3E-14 133.9 27.6 215 238-519 184-412 (433)
215 PRK04922 tolB translocation pr 99.2 8.1E-10 1.8E-14 136.0 25.4 207 205-456 192-412 (433)
216 PRK05137 tolB translocation pr 99.2 2.2E-09 4.8E-14 132.2 28.8 216 238-520 182-414 (435)
217 KOG2111 Uncharacterized conser 99.2 8.3E-09 1.8E-13 113.6 28.4 178 238-457 75-258 (346)
218 PF02239 Cytochrom_D1: Cytochr 99.2 5.3E-08 1.2E-12 116.5 37.2 262 207-520 27-304 (369)
219 KOG2110 Uncharacterized conser 99.2 4.9E-09 1.1E-13 117.4 26.1 241 216-521 5-251 (391)
220 PRK05137 tolB translocation pr 99.2 2E-09 4.4E-14 132.6 25.9 209 204-457 189-414 (435)
221 PRK02889 tolB translocation pr 99.2 1.5E-09 3.3E-14 133.2 24.5 204 206-454 185-402 (427)
222 PRK02889 tolB translocation pr 99.2 1.9E-09 4E-14 132.5 24.5 215 238-517 176-402 (427)
223 KOG2321 WD40 repeat protein [G 99.2 2.9E-09 6.3E-14 124.3 23.8 251 207-522 43-306 (703)
224 PF08662 eIF2A: Eukaryotic tra 99.2 1.5E-09 3.2E-14 118.3 20.4 112 375-518 58-179 (194)
225 KOG2394 WD40 protein DMR-N9 [G 99.1 4.5E-10 9.7E-15 130.2 14.4 52 376-429 332-383 (636)
226 PF08662 eIF2A: Eukaryotic tra 99.1 3.6E-09 7.8E-14 115.3 20.9 147 221-455 10-179 (194)
227 KOG1354 Serine/threonine prote 99.1 2.9E-09 6.3E-14 117.6 19.7 273 215-522 24-363 (433)
228 KOG0974 WD-repeat protein WDR6 99.1 1.5E-09 3.3E-14 134.9 19.7 228 228-519 61-289 (967)
229 KOG1523 Actin-related protein 99.1 2.5E-09 5.4E-14 117.6 17.8 220 256-520 9-238 (361)
230 KOG0771 Prolactin regulatory e 99.1 6.2E-10 1.3E-14 126.7 13.2 198 151-407 149-354 (398)
231 TIGR02800 propeller_TolB tol-p 99.1 1.6E-08 3.5E-13 124.0 26.9 212 238-517 170-396 (417)
232 KOG3881 Uncharacterized conser 99.1 3.1E-09 6.7E-14 119.7 17.4 209 215-457 104-322 (412)
233 KOG3881 Uncharacterized conser 99.1 5.5E-09 1.2E-13 117.7 19.3 253 215-520 54-322 (412)
234 KOG0309 Conserved WD40 repeat- 99.1 1.6E-09 3.5E-14 128.8 15.8 259 218-519 69-340 (1081)
235 KOG4547 WD40 repeat-containing 99.1 1.4E-08 3E-13 120.2 23.5 194 226-456 3-221 (541)
236 KOG1272 WD40-repeat-containing 99.1 2.4E-10 5.2E-15 130.4 8.5 193 260-519 132-324 (545)
237 KOG2139 WD40 repeat protein [G 99.1 6.4E-09 1.4E-13 115.7 19.3 210 258-517 99-310 (445)
238 KOG2041 WD40 repeat protein [G 99.1 3.7E-08 8.1E-13 116.8 26.1 321 217-596 15-402 (1189)
239 KOG0974 WD-repeat protein WDR6 99.0 2.9E-09 6.4E-14 132.5 17.0 151 222-457 139-290 (967)
240 KOG1310 WD40 repeat protein [G 99.0 1.3E-09 2.8E-14 126.1 12.9 178 249-518 42-231 (758)
241 TIGR02800 propeller_TolB tol-p 99.0 3E-08 6.5E-13 121.6 25.9 203 206-453 179-395 (417)
242 PF02239 Cytochrom_D1: Cytochr 99.0 8.6E-08 1.9E-12 114.8 28.9 322 229-611 6-356 (369)
243 KOG1409 Uncharacterized conser 99.0 3.1E-08 6.7E-13 109.9 22.8 226 159-457 37-272 (404)
244 PRK00178 tolB translocation pr 99.0 6.8E-08 1.5E-12 119.0 28.0 213 239-518 180-406 (430)
245 KOG2315 Predicted translation 99.0 1.5E-07 3.2E-12 110.8 27.5 234 220-519 129-391 (566)
246 KOG4497 Uncharacterized conser 99.0 1.2E-08 2.6E-13 112.0 17.3 258 217-518 49-391 (447)
247 KOG4497 Uncharacterized conser 99.0 3.7E-09 8.1E-14 116.0 13.1 218 222-517 14-239 (447)
248 PF10282 Lactonase: Lactonase, 99.0 1.1E-06 2.4E-11 105.0 35.5 256 217-519 37-323 (345)
249 PRK04792 tolB translocation pr 99.0 5.8E-08 1.2E-12 119.9 25.3 201 210-455 211-425 (448)
250 PRK00178 tolB translocation pr 99.0 8.9E-08 1.9E-12 118.0 26.6 207 204-455 186-406 (430)
251 KOG4190 Uncharacterized conser 99.0 2E-09 4.4E-14 123.8 10.7 252 205-516 724-986 (1034)
252 KOG2111 Uncharacterized conser 99.0 9.7E-07 2.1E-11 97.7 30.7 237 218-521 7-259 (346)
253 PRK04792 tolB translocation pr 98.9 1.6E-07 3.4E-12 116.0 27.1 213 239-518 199-425 (448)
254 PF10282 Lactonase: Lactonase, 98.9 4.8E-06 1E-10 99.5 38.9 302 231-580 2-344 (345)
255 KOG2321 WD40 repeat protein [G 98.9 7.8E-08 1.7E-12 112.6 22.3 250 255-568 49-306 (703)
256 KOG4547 WD40 repeat-containing 98.9 9.1E-08 2E-12 113.4 22.7 194 267-519 2-221 (541)
257 PRK01029 tolB translocation pr 98.9 3.1E-07 6.7E-12 112.6 28.3 223 238-521 165-406 (428)
258 PRK01029 tolB translocation pr 98.9 3.2E-07 6.9E-12 112.5 27.8 210 210-457 178-405 (428)
259 KOG0280 Uncharacterized conser 98.9 9.6E-08 2.1E-12 104.3 18.1 207 218-520 123-335 (339)
260 PLN02919 haloacid dehalogenase 98.9 1.2E-06 2.7E-11 117.7 33.0 265 220-521 571-891 (1057)
261 COG2706 3-carboxymuconate cycl 98.8 1.3E-05 2.8E-10 90.9 33.4 237 237-519 15-275 (346)
262 KOG1064 RAVE (regulator of V-A 98.8 3E-08 6.5E-13 128.0 13.2 189 215-457 2207-2400(2439)
263 COG5354 Uncharacterized protei 98.8 2.7E-06 5.8E-11 99.2 26.8 115 374-519 272-396 (561)
264 PF15492 Nbas_N: Neuroblastoma 98.7 3.4E-06 7.4E-11 93.0 23.8 207 219-479 46-271 (282)
265 KOG3914 WD repeat protein WDR4 98.6 1.9E-07 4.2E-12 106.2 12.7 170 260-479 65-235 (390)
266 COG5170 CDC55 Serine/threonine 98.6 5.4E-07 1.2E-11 98.5 15.6 268 215-518 25-367 (460)
267 KOG0280 Uncharacterized conser 98.6 2.7E-06 5.8E-11 93.2 19.8 190 237-457 45-243 (339)
268 KOG1064 RAVE (regulator of V-A 98.6 1.7E-07 3.7E-12 121.3 12.3 206 236-519 2188-2399(2439)
269 PLN02919 haloacid dehalogenase 98.6 1.4E-05 3.1E-10 107.6 30.7 225 217-457 624-890 (1057)
270 KOG2314 Translation initiation 98.6 4.5E-06 9.7E-11 97.9 22.1 244 220-508 214-557 (698)
271 KOG3914 WD repeat protein WDR4 98.6 4.1E-07 8.8E-12 103.6 13.3 162 219-416 65-232 (390)
272 KOG1354 Serine/threonine prote 98.6 4.9E-06 1.1E-10 92.7 21.0 237 256-520 24-303 (433)
273 COG2706 3-carboxymuconate cycl 98.6 0.00021 4.6E-09 81.3 34.0 256 215-519 38-322 (346)
274 KOG4532 WD40-like repeat conta 98.6 7.8E-06 1.7E-10 88.4 21.3 193 227-457 83-284 (344)
275 KOG1912 WD40 repeat protein [G 98.6 8.8E-06 1.9E-10 98.6 24.0 231 207-456 46-305 (1062)
276 KOG2695 WD40 repeat protein [G 98.5 2.1E-07 4.5E-12 103.4 9.3 90 375-480 297-389 (425)
277 KOG2041 WD40 repeat protein [G 98.5 2.9E-05 6.4E-10 93.0 27.3 242 152-429 20-317 (1189)
278 COG5354 Uncharacterized protei 98.5 1.7E-05 3.6E-10 92.8 24.4 301 215-568 31-399 (561)
279 KOG1409 Uncharacterized conser 98.5 5E-06 1.1E-10 92.8 19.2 254 206-520 14-272 (404)
280 KOG2315 Predicted translation 98.5 3.6E-05 7.8E-10 91.2 25.7 291 219-569 37-395 (566)
281 PF04762 IKI3: IKI3 family; I 98.5 0.00013 2.8E-09 96.8 34.0 255 215-517 74-378 (928)
282 KOG4190 Uncharacterized conser 98.4 5.2E-07 1.1E-11 104.4 9.4 180 250-521 728-909 (1034)
283 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00034 7.4E-09 82.5 33.0 236 224-521 53-333 (352)
284 TIGR03300 assembly_YfgL outer 98.4 7.6E-05 1.7E-09 90.4 27.6 237 227-521 104-341 (377)
285 TIGR03300 assembly_YfgL outer 98.4 0.00017 3.6E-09 87.4 30.2 266 227-569 64-343 (377)
286 COG4946 Uncharacterized protei 98.4 0.00013 2.8E-09 84.5 25.7 309 224-603 327-655 (668)
287 PRK04043 tolB translocation pr 98.3 8.7E-05 1.9E-09 90.7 25.6 191 218-455 189-400 (419)
288 KOG1832 HIV-1 Vpr-binding prot 98.3 4E-07 8.6E-12 110.6 4.9 200 206-457 1091-1293(1516)
289 PF04762 IKI3: IKI3 family; I 98.3 0.00035 7.5E-09 92.8 32.8 221 256-519 74-334 (928)
290 PF08450 SGL: SMP-30/Gluconola 98.3 0.00065 1.4E-08 77.1 30.7 203 221-480 4-225 (246)
291 PF15492 Nbas_N: Neuroblastoma 98.3 0.00014 3E-09 80.6 23.5 153 222-397 3-167 (282)
292 KOG1912 WD40 repeat protein [G 98.3 2.9E-05 6.4E-10 94.2 19.5 240 219-519 18-305 (1062)
293 KOG0309 Conserved WD40 repeat- 98.2 2.2E-06 4.8E-11 102.9 8.7 202 157-408 126-340 (1081)
294 PRK04043 tolB translocation pr 98.2 0.00031 6.7E-09 85.9 27.8 213 238-519 169-401 (419)
295 KOG4714 Nucleoporin [Nuclear s 98.2 6.8E-06 1.5E-10 88.6 10.8 166 208-407 81-254 (319)
296 KOG2066 Vacuolar assembly/sort 98.2 6.8E-05 1.5E-09 92.2 20.1 185 217-456 40-234 (846)
297 KOG0882 Cyclophilin-related pe 98.2 1.7E-05 3.6E-10 91.3 13.9 264 215-521 8-308 (558)
298 KOG4714 Nucleoporin [Nuclear s 98.2 1.1E-05 2.3E-10 87.2 11.6 130 377-516 180-316 (319)
299 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0015 3.3E-08 77.1 30.7 216 220-476 108-339 (352)
300 KOG2114 Vacuolar assembly/sort 98.2 0.00026 5.6E-09 87.8 24.1 207 218-457 27-245 (933)
301 KOG1645 RING-finger-containing 98.2 7.9E-05 1.7E-09 85.1 17.9 84 207-291 184-269 (463)
302 KOG0882 Cyclophilin-related pe 98.1 6.1E-05 1.3E-09 86.8 15.5 292 158-516 20-370 (558)
303 KOG1920 IkappaB kinase complex 98.1 0.0019 4.1E-08 83.2 30.0 222 257-519 68-323 (1265)
304 PF13360 PQQ_2: PQQ-like domai 98.1 0.0013 2.8E-08 73.9 26.0 215 237-521 2-233 (238)
305 COG4946 Uncharacterized protei 98.1 0.0019 4.1E-08 75.2 26.7 221 219-507 269-507 (668)
306 KOG2695 WD40 repeat protein [G 98.0 7.6E-06 1.6E-10 91.3 7.1 120 375-521 251-379 (425)
307 PF00400 WD40: WD domain, G-be 98.0 1.8E-05 3.8E-10 62.2 6.4 38 207-244 2-39 (39)
308 PF08450 SGL: SMP-30/Gluconola 97.9 0.0063 1.4E-07 69.1 28.5 186 219-442 42-243 (246)
309 KOG4532 WD40-like repeat conta 97.9 0.00074 1.6E-08 73.6 18.9 154 391-568 130-286 (344)
310 PF07433 DUF1513: Protein of u 97.8 0.0092 2E-07 68.4 27.3 238 220-510 8-278 (305)
311 KOG1924 RhoA GTPase effector D 97.8 5.9E-05 1.3E-09 91.6 10.2 10 1002-1011 909-918 (1102)
312 PF00400 WD40: WD domain, G-be 97.8 4.9E-05 1.1E-09 59.6 6.2 39 409-453 1-39 (39)
313 KOG1920 IkappaB kinase complex 97.8 0.0042 9E-08 80.2 26.2 224 217-479 69-336 (1265)
314 COG5170 CDC55 Serine/threonine 97.8 0.00032 6.9E-09 77.4 14.1 246 256-522 25-313 (460)
315 PRK11138 outer membrane biogen 97.8 0.016 3.5E-07 70.7 30.5 244 227-517 119-393 (394)
316 PF11768 DUF3312: Protein of u 97.7 0.039 8.4E-07 67.3 30.5 224 256-520 84-331 (545)
317 KOG1645 RING-finger-containing 97.7 0.00072 1.6E-08 77.5 15.1 85 369-459 186-270 (463)
318 KOG3621 WD40 repeat-containing 97.7 0.0025 5.5E-08 78.0 20.3 210 215-455 32-244 (726)
319 KOG2314 Translation initiation 97.7 0.0043 9.3E-08 73.7 21.2 96 192-289 216-335 (698)
320 KOG1832 HIV-1 Vpr-binding prot 97.6 5.6E-05 1.2E-09 92.6 5.0 201 369-615 1094-1304(1516)
321 KOG1008 Uncharacterized conser 97.6 3E-05 6.5E-10 92.8 2.8 206 215-456 55-276 (783)
322 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.1 2.2E-06 57.3 28.8 104 228-347 23-126 (354)
323 KOG2114 Vacuolar assembly/sort 97.6 0.011 2.4E-07 74.0 23.8 208 169-420 27-257 (933)
324 PF07433 DUF1513: Protein of u 97.5 0.011 2.4E-07 67.7 22.3 210 208-449 48-279 (305)
325 KOG1275 PAB-dependent poly(A) 97.5 0.0012 2.5E-08 82.4 15.2 184 227-516 146-340 (1118)
326 PF13360 PQQ_2: PQQ-like domai 97.5 0.016 3.4E-07 65.0 23.5 195 226-457 34-232 (238)
327 PRK11138 outer membrane biogen 97.5 0.046 1E-06 66.7 29.0 271 227-569 68-358 (394)
328 PF11768 DUF3312: Protein of u 97.4 0.028 6E-07 68.4 24.9 75 374-457 257-331 (545)
329 KOG2066 Vacuolar assembly/sort 97.4 0.0042 9.1E-08 77.0 17.7 190 257-520 39-235 (846)
330 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.15 3.3E-06 56.0 27.4 104 227-345 62-166 (354)
331 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.074 1.6E-06 63.9 28.5 195 225-457 1-220 (353)
332 PF06977 SdiA-regulated: SdiA- 97.3 0.072 1.6E-06 60.2 24.7 218 212-452 17-247 (248)
333 KOG3617 WD40 and TPR repeat-co 97.3 0.0042 9.2E-08 76.5 15.4 71 219-290 62-133 (1416)
334 KOG1275 PAB-dependent poly(A) 97.3 0.0022 4.7E-08 80.1 13.0 147 224-405 183-340 (1118)
335 PF08553 VID27: VID27 cytoplas 97.3 0.028 6E-07 72.5 23.2 150 268-455 491-647 (794)
336 PF04841 Vps16_N: Vps16, N-ter 97.2 0.065 1.4E-06 65.6 25.7 190 207-429 71-268 (410)
337 PF08596 Lgl_C: Lethal giant l 97.2 0.075 1.6E-06 64.4 25.6 245 218-508 3-326 (395)
338 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.15 3.2E-06 61.4 27.4 62 216-279 42-121 (353)
339 PRK02888 nitrous-oxide reducta 97.2 0.12 2.5E-06 64.7 26.3 114 386-519 286-405 (635)
340 PF14583 Pectate_lyase22: Olig 97.1 0.29 6.2E-06 58.1 27.3 244 222-510 41-304 (386)
341 PF00780 CNH: CNH domain; Int 97.0 0.59 1.3E-05 53.8 29.6 239 226-521 5-258 (275)
342 PF08596 Lgl_C: Lethal giant l 97.0 0.093 2E-06 63.6 23.2 263 153-454 8-334 (395)
343 PF02897 Peptidase_S9_N: Proly 97.0 0.42 9.2E-06 58.7 29.5 199 220-455 127-357 (414)
344 PRK02888 nitrous-oxide reducta 96.8 0.065 1.4E-06 66.9 20.3 234 224-508 200-451 (635)
345 PF04841 Vps16_N: Vps16, N-ter 96.7 0.37 7.9E-06 59.1 25.7 204 222-457 34-248 (410)
346 cd00216 PQQ_DH Dehydrogenases 96.7 0.93 2E-05 57.0 29.8 62 228-291 61-131 (488)
347 PF06977 SdiA-regulated: SdiA- 96.6 0.85 1.8E-05 51.7 25.7 217 252-515 16-247 (248)
348 COG3386 Gluconolactonase [Carb 96.6 0.46 1E-05 55.6 24.3 203 223-480 31-255 (307)
349 cd00216 PQQ_DH Dehydrogenases 96.5 1.1 2.4E-05 56.4 28.6 107 391-521 303-427 (488)
350 PF14583 Pectate_lyase22: Olig 96.5 2.5 5.5E-05 50.4 29.2 219 175-443 42-301 (386)
351 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 1.3 2.8E-05 53.8 27.5 95 370-477 301-408 (415)
352 PF04053 Coatomer_WDAD: Coatom 96.4 0.31 6.7E-06 60.0 22.3 145 254-455 29-173 (443)
353 COG0823 TolB Periplasmic compo 96.4 0.1 2.2E-06 63.9 17.8 180 238-457 173-360 (425)
354 KOG3621 WD40 repeat-containing 96.4 0.11 2.5E-06 64.1 17.6 163 256-456 32-198 (726)
355 smart00320 WD40 WD40 repeats. 96.3 0.008 1.7E-07 44.8 5.2 38 207-244 3-40 (40)
356 KOG1008 Uncharacterized conser 96.3 0.0014 3.1E-08 79.0 1.0 164 213-407 99-275 (783)
357 PF06433 Me-amine-dh_H: Methyl 96.3 0.73 1.6E-05 53.8 22.7 219 222-479 100-332 (342)
358 KOG2395 Protein involved in va 96.2 0.11 2.5E-06 62.1 16.2 142 272-456 348-501 (644)
359 PF04053 Coatomer_WDAD: Coatom 96.2 0.11 2.3E-06 63.9 16.8 172 281-519 3-174 (443)
360 COG3386 Gluconolactonase [Carb 96.1 1.4 3E-05 51.7 24.5 190 217-443 66-274 (307)
361 COG0823 TolB Periplasmic compo 96.1 0.16 3.5E-06 62.1 17.6 192 211-443 187-388 (425)
362 COG3391 Uncharacterized conser 96.0 1.5 3.2E-05 53.4 25.2 203 218-457 75-285 (381)
363 PF06433 Me-amine-dh_H: Methyl 96.0 4.6 0.0001 47.4 27.8 178 238-457 17-215 (342)
364 COG3391 Uncharacterized conser 96.0 3.5 7.5E-05 50.2 28.3 239 218-520 32-285 (381)
365 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 1.5 3.3E-05 53.2 24.4 70 221-291 6-99 (415)
366 PF03178 CPSF_A: CPSF A subuni 95.8 2.8 6E-05 49.6 26.2 181 238-456 2-203 (321)
367 smart00320 WD40 WD40 repeats. 95.7 0.025 5.4E-07 41.9 5.3 39 409-453 2-40 (40)
368 KOG4640 Anaphase-promoting com 95.6 0.042 9.2E-07 67.0 9.3 74 217-291 21-95 (665)
369 PF02897 Peptidase_S9_N: Proly 95.6 8.5 0.00019 47.2 29.9 160 261-457 127-311 (414)
370 PF10168 Nup88: Nuclear pore c 95.4 2.4 5.2E-05 55.3 25.0 94 315-409 85-181 (717)
371 PF03178 CPSF_A: CPSF A subuni 95.0 5.2 0.00011 47.3 24.8 141 374-543 86-230 (321)
372 PF05694 SBP56: 56kDa selenium 94.9 5.3 0.00011 48.2 23.5 134 377-522 181-346 (461)
373 PF08553 VID27: VID27 cytoplas 94.9 0.6 1.3E-05 60.6 17.2 96 186-288 551-647 (794)
374 COG3490 Uncharacterized protei 94.9 2.9 6.3E-05 47.1 19.7 68 370-452 113-186 (366)
375 KOG1897 Damage-specific DNA bi 94.7 15 0.00033 48.0 28.0 112 379-520 777-900 (1096)
376 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.7 17 0.00038 46.1 30.8 64 228-294 120-195 (527)
377 PRK13616 lipoprotein LpqB; Pro 94.7 1.7 3.7E-05 55.7 20.3 156 217-407 350-525 (591)
378 PF14783 BBS2_Mid: Ciliary BBS 94.5 1.3 2.8E-05 43.3 14.2 67 379-455 2-71 (111)
379 PHA02713 hypothetical protein; 94.3 2.4 5.2E-05 54.2 20.7 65 435-520 463-535 (557)
380 KOG4441 Proteins containing BT 94.1 1.6 3.6E-05 55.7 18.6 64 226-291 283-360 (571)
381 PF14783 BBS2_Mid: Ciliary BBS 94.1 1.3 2.8E-05 43.4 13.3 92 159-284 16-110 (111)
382 KOG2079 Vacuolar assembly/sort 94.1 0.45 9.8E-06 61.6 13.0 104 224-339 95-200 (1206)
383 PF07995 GSDH: Glucose / Sorbo 94.0 7.4 0.00016 46.4 22.8 259 218-513 3-330 (331)
384 KOG3617 WD40 and TPR repeat-co 94.0 0.24 5.3E-06 61.9 10.1 71 379-456 62-132 (1416)
385 KOG4499 Ca2+-binding protein R 93.8 11 0.00023 41.6 20.7 57 382-443 217-273 (310)
386 PF10647 Gmad1: Lipoprotein Lp 93.8 12 0.00027 42.6 23.1 159 218-403 25-192 (253)
387 PRK13616 lipoprotein LpqB; Pro 93.6 7.7 0.00017 49.8 23.2 165 256-455 348-525 (591)
388 KOG4499 Ca2+-binding protein R 93.6 4.4 9.6E-05 44.4 17.4 90 378-484 159-258 (310)
389 PF12234 Rav1p_C: RAVE protein 93.3 3.1 6.7E-05 52.9 18.3 117 222-343 35-155 (631)
390 PRK10115 protease 2; Provision 93.3 37 0.0008 44.7 32.2 71 217-291 127-210 (686)
391 PF15390 DUF4613: Domain of un 93.2 2 4.3E-05 52.9 15.7 160 217-408 20-187 (671)
392 KOG4640 Anaphase-promoting com 93.2 0.28 6.2E-06 60.1 8.7 74 376-457 20-94 (665)
393 KOG2079 Vacuolar assembly/sort 93.0 0.35 7.6E-06 62.6 9.5 106 390-520 100-205 (1206)
394 COG5276 Uncharacterized conser 92.9 20 0.00044 40.8 24.1 200 212-457 37-243 (370)
395 KOG1897 Damage-specific DNA bi 92.9 42 0.00091 44.2 34.8 119 167-289 256-391 (1096)
396 PF00780 CNH: CNH domain; Int 92.7 23 0.00049 40.7 26.6 212 219-479 38-267 (275)
397 COG5167 VID27 Protein involved 92.5 4.7 0.0001 48.6 17.1 151 261-457 470-634 (776)
398 PF05694 SBP56: 56kDa selenium 92.4 12 0.00026 45.3 20.5 233 227-506 86-391 (461)
399 KOG2444 WD40 repeat protein [G 92.4 0.19 4.1E-06 54.8 5.2 63 390-456 115-178 (238)
400 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.3 20 0.00043 45.6 24.0 61 228-291 69-141 (527)
401 PHA03098 kelch-like protein; P 92.2 4 8.7E-05 52.0 18.0 52 225-279 292-352 (534)
402 COG3204 Uncharacterized protei 92.2 12 0.00026 42.9 18.9 190 214-420 83-275 (316)
403 COG3490 Uncharacterized protei 92.0 13 0.00029 42.0 18.8 60 223-285 120-186 (366)
404 KOG0994 Extracellular matrix g 92.0 54 0.0012 43.7 26.2 36 1037-1072 1466-1507(1758)
405 COG3204 Uncharacterized protei 91.9 27 0.00058 40.1 21.3 206 220-456 47-264 (316)
406 PHA02713 hypothetical protein; 91.9 4 8.6E-05 52.3 17.3 63 226-291 302-378 (557)
407 KOG2280 Vacuolar assembly/sort 91.9 17 0.00036 46.3 21.5 176 238-429 64-268 (829)
408 KOG3630 Nuclear pore complex, 91.0 3.1 6.7E-05 54.6 14.4 112 218-343 102-227 (1405)
409 PF05096 Glu_cyclase_2: Glutam 90.8 35 0.00075 39.0 22.8 193 209-443 36-249 (264)
410 KOG2444 WD40 repeat protein [G 90.7 0.55 1.2E-05 51.3 6.6 103 390-519 71-178 (238)
411 PF12234 Rav1p_C: RAVE protein 90.6 10 0.00022 48.5 18.4 123 379-517 32-155 (631)
412 TIGR03074 PQQ_membr_DH membran 90.5 54 0.0012 43.5 25.8 24 499-522 455-481 (764)
413 KOG2395 Protein involved in va 90.0 5.2 0.00011 48.6 14.3 121 206-344 366-500 (644)
414 PF01442 Apolipoprotein: Apoli 89.3 35 0.00075 36.7 25.3 21 973-993 3-23 (202)
415 PF12894 Apc4_WD40: Anaphase-p 88.9 0.94 2E-05 37.3 5.1 36 375-412 10-45 (47)
416 KOG4441 Proteins containing BT 88.8 8.6 0.00019 49.3 16.3 66 226-291 331-407 (571)
417 PF12894 Apc4_WD40: Anaphase-p 88.3 1.2 2.7E-05 36.7 5.4 30 217-246 12-41 (47)
418 PRK09866 hypothetical protein; 88.1 92 0.002 40.1 23.7 55 1143-1197 643-697 (741)
419 KOG4460 Nuclear pore complex, 87.2 6.1 0.00013 47.9 12.3 101 316-417 105-208 (741)
420 KOG3630 Nuclear pore complex, 87.0 4.4 9.5E-05 53.3 11.7 63 375-443 197-262 (1405)
421 TIGR02604 Piru_Ver_Nterm putat 86.9 25 0.00053 42.6 18.1 109 217-334 14-143 (367)
422 PF15390 DUF4613: Domain of un 86.6 9.4 0.0002 47.3 13.7 122 316-455 58-186 (671)
423 PRK10115 protease 2; Provision 86.3 1.3E+02 0.0027 39.8 33.8 69 220-288 175-255 (686)
424 TIGR03118 PEPCTERM_chp_1 conse 85.7 77 0.0017 36.8 25.7 234 218-480 24-292 (336)
425 TIGR02604 Piru_Ver_Nterm putat 85.7 30 0.00065 41.8 17.9 153 258-443 14-202 (367)
426 PF14870 PSII_BNR: Photosynthe 85.6 81 0.0018 37.0 28.5 113 372-510 140-254 (302)
427 PRK13684 Ycf48-like protein; P 85.3 91 0.002 37.2 24.8 111 376-513 172-283 (334)
428 PF10214 Rrn6: RNA polymerase 85.1 1.5E+02 0.0033 39.6 26.7 187 255-457 77-278 (765)
429 PF05935 Arylsulfotrans: Aryls 83.7 45 0.00098 41.9 18.7 176 229-420 116-314 (477)
430 KOG2377 Uncharacterized conser 82.3 67 0.0014 38.9 17.5 111 208-334 58-173 (657)
431 PF14870 PSII_BNR: Photosynthe 82.2 1.1E+02 0.0024 35.9 21.0 160 252-452 139-301 (302)
432 PHA02790 Kelch-like protein; P 81.4 49 0.0011 41.6 17.9 24 226-249 270-298 (480)
433 PLN02153 epithiospecifier prot 81.2 1E+02 0.0023 36.7 20.0 23 227-249 32-61 (341)
434 PF07569 Hira: TUP1-like enhan 81.0 8.4 0.00018 43.0 9.7 66 224-291 18-98 (219)
435 PF10313 DUF2415: Uncharacteri 80.5 5.3 0.00012 32.2 5.6 33 377-409 1-35 (43)
436 TIGR03074 PQQ_membr_DH membran 79.3 1.6E+02 0.0035 39.1 22.0 26 391-416 461-486 (764)
437 PRK15362 pathogenicity island 79.2 1.6E+02 0.0034 35.8 26.0 15 979-993 231-245 (473)
438 PF05096 Glu_cyclase_2: Glutam 78.9 1.3E+02 0.0028 34.5 23.0 193 259-508 46-251 (264)
439 PF11101 DUF2884: Protein of u 78.1 75 0.0016 35.8 16.1 9 1153-1161 152-160 (229)
440 PF10647 Gmad1: Lipoprotein Lp 77.8 1.3E+02 0.0029 34.2 23.5 151 259-451 25-192 (253)
441 KOG1900 Nuclear pore complex, 76.5 26 0.00057 47.4 13.3 187 241-457 63-274 (1311)
442 PF10168 Nup88: Nuclear pore c 75.8 2.1E+02 0.0046 37.8 21.5 74 217-291 85-182 (717)
443 KOG3616 Selective LIM binding 75.5 31 0.00067 43.5 12.6 69 217-288 15-83 (1636)
444 KOG1900 Nuclear pore complex, 74.6 38 0.00083 46.0 14.1 164 235-408 96-273 (1311)
445 PF04286 DUF445: Protein of un 74.4 2E+02 0.0043 34.4 21.4 28 1272-1299 300-330 (367)
446 KOG3671 Actin regulatory prote 74.4 37 0.00081 41.3 12.7 8 167-174 478-485 (569)
447 PF14781 BBS2_N: Ciliary BBSom 74.4 1.1E+02 0.0023 31.4 14.6 119 321-457 5-127 (136)
448 PF14761 HPS3_N: Hermansky-Pud 73.8 1.1E+02 0.0024 33.8 15.3 48 229-278 29-79 (215)
449 COG5167 VID27 Protein involved 73.8 53 0.0012 40.1 13.7 61 227-289 572-633 (776)
450 PF07569 Hira: TUP1-like enhan 73.6 16 0.00034 40.9 9.2 64 386-457 20-97 (219)
451 TIGR03185 DNA_S_dndD DNA sulfu 72.6 3.1E+02 0.0068 36.0 27.5 27 1028-1054 266-292 (650)
452 PF15450 DUF4631: Domain of un 72.2 2.6E+02 0.0056 34.8 31.1 55 998-1052 197-257 (531)
453 KOG0918 Selenium-binding prote 72.0 2.1E+02 0.0046 34.3 17.7 122 391-523 221-347 (476)
454 PF10313 DUF2415: Uncharacteri 70.6 10 0.00022 30.6 4.8 33 258-290 1-35 (43)
455 PHA03098 kelch-like protein; P 70.5 45 0.00098 42.5 13.7 24 226-249 341-369 (534)
456 PF08728 CRT10: CRT10; InterP 70.3 92 0.002 40.6 15.8 77 375-454 162-245 (717)
457 KOG2247 WD40 repeat-containing 70.0 0.6 1.3E-05 55.8 -3.1 146 221-404 39-185 (615)
458 PF11635 Med16: Mediator compl 69.1 2.9E+02 0.0063 36.9 20.9 70 375-450 258-345 (753)
459 PF10214 Rrn6: RNA polymerase 68.3 4.1E+02 0.009 35.6 28.6 75 377-457 146-234 (765)
460 KOG0391 SNF2 family DNA-depend 67.9 62 0.0013 43.5 13.3 10 13-22 1796-1805(1958)
461 PF11715 Nup160: Nucleoporin N 67.4 13 0.00028 47.6 7.9 94 325-418 157-259 (547)
462 PRK13684 Ycf48-like protein; P 67.2 2.7E+02 0.0059 33.1 24.4 114 315-457 173-289 (334)
463 PF08728 CRT10: CRT10; InterP 67.2 1.9E+02 0.0042 37.7 17.7 169 327-518 49-246 (717)
464 PF01153 Glypican: Glypican; 66.4 3.8E+02 0.0082 34.5 22.5 42 1040-1082 129-170 (557)
465 PF11715 Nup160: Nucleoporin N 66.4 57 0.0012 41.8 13.4 44 422-478 216-259 (547)
466 KOG1983 Tomosyn and related SN 65.0 2.1E+02 0.0045 39.5 18.5 70 375-457 197-266 (993)
467 KOG4460 Nuclear pore complex, 64.6 90 0.002 38.5 13.1 75 217-291 104-201 (741)
468 KOG2129 Uncharacterized conser 64.5 3.1E+02 0.0068 32.9 18.0 33 1267-1299 442-474 (552)
469 cd07646 I-BAR_IMD_IRSp53 Inver 64.5 2.4E+02 0.0052 31.5 15.6 25 1059-1083 5-29 (232)
470 PF05879 RHD3: Root hair defec 64.5 4.7E+02 0.01 34.9 29.8 50 1134-1183 426-475 (742)
471 PF14727 PHTB1_N: PTHB1 N-term 64.3 3.5E+02 0.0076 33.4 22.0 186 229-451 146-356 (418)
472 KOG3771 Amphiphysin [Intracell 64.3 3.5E+02 0.0075 33.3 21.8 28 1195-1222 195-222 (460)
473 PF03938 OmpH: Outer membrane 64.0 91 0.002 32.6 12.2 27 967-993 28-54 (158)
474 PF06657 Cep57_MT_bd: Centroso 63.7 49 0.0011 30.6 8.6 52 967-1030 15-67 (79)
475 PRK06800 fliH flagellar assemb 63.1 2.1E+02 0.0046 30.5 14.4 104 972-1082 35-142 (228)
476 COG5178 PRP8 U5 snRNP spliceos 62.8 6 0.00013 51.5 3.3 20 1029-1048 1408-1427(2365)
477 PF10395 Utp8: Utp8 family; I 62.1 4.7E+02 0.01 34.1 24.2 33 257-290 129-161 (670)
478 PF09731 Mitofilin: Mitochondr 62.0 4.6E+02 0.0099 33.9 22.9 158 972-1136 259-416 (582)
479 PRK14131 N-acetylneuraminic ac 61.6 3.6E+02 0.0078 32.6 19.5 55 225-279 82-149 (376)
480 KOG2377 Uncharacterized conser 61.4 77 0.0017 38.4 11.6 122 234-388 39-165 (657)
481 PF06705 SF-assemblin: SF-asse 60.6 3E+02 0.0065 31.3 27.5 193 1017-1227 9-220 (247)
482 PF07995 GSDH: Glucose / Sorbo 60.4 3.5E+02 0.0077 32.1 27.8 65 259-334 3-71 (331)
483 TIGR03032 conserved hypothetic 60.3 3.4E+02 0.0075 31.9 22.4 45 403-457 189-233 (335)
484 COG3823 Glutamine cyclotransfe 60.3 2.7E+02 0.0059 30.7 15.6 28 262-291 50-79 (262)
485 PF12768 Rax2: Cortical protei 59.6 1.8E+02 0.004 33.7 14.4 137 228-443 5-168 (281)
486 PF08801 Nucleoporin_N: Nup133 59.3 1.5E+02 0.0033 36.5 14.9 33 376-409 189-221 (422)
487 COG4590 ABC-type uncharacteriz 59.1 43 0.00094 40.2 9.1 168 253-457 216-388 (733)
488 PLN00033 photosystem II stabil 58.7 4.2E+02 0.0092 32.5 22.3 112 314-452 280-396 (398)
489 PLN02193 nitrile-specifier pro 58.6 4.6E+02 0.01 32.9 24.7 250 223-519 171-469 (470)
490 PF10691 DUF2497: Protein of u 58.5 32 0.0007 31.3 6.3 66 1010-1075 5-71 (73)
491 KOG1898 Splicing factor 3b, su 58.1 6.3E+02 0.014 34.3 19.8 240 239-581 854-1120(1205)
492 PHA03378 EBNA-3B; Provisional 58.0 77 0.0017 40.0 11.2 117 15-138 691-810 (991)
493 PRK15362 pathogenicity island 57.0 4.4E+02 0.0096 32.2 26.8 218 979-1215 231-460 (473)
494 TIGR02276 beta_rpt_yvtn 40-res 56.4 33 0.00073 26.7 5.6 42 386-429 1-42 (42)
495 PF07464 ApoLp-III: Apolipopho 56.3 2.1E+02 0.0045 30.2 12.8 143 978-1168 3-151 (155)
496 KOG0260 RNA polymerase II, lar 55.6 3.1E+02 0.0068 37.3 16.4 150 1-158 1438-1597(1605)
497 COG5290 IkappaB kinase complex 54.6 1.7E+02 0.0036 37.9 13.4 230 216-519 112-367 (1243)
498 KOG4672 Uncharacterized conser 54.5 72 0.0016 37.9 9.8 98 1-101 303-401 (487)
499 COG5276 Uncharacterized conser 54.3 4.1E+02 0.0088 30.9 26.8 265 159-517 97-368 (370)
500 PF12657 TFIIIC_delta: Transcr 54.1 76 0.0016 33.9 9.6 84 319-404 9-118 (173)
No 1
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=7.2e-113 Score=1001.83 Aligned_cols=1123 Identities=50% Similarity=0.749 Sum_probs=885.6
Q ss_pred CCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECC
Q 039790 167 APPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNII 246 (1395)
Q Consensus 167 Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~ 246 (1395)
-+.+++-.+..|.|+.+.|...||+++. ..|+.++++.++++..+......|..+-|.++.-|+++|.++|.|++.+++
T Consensus 135 v~dl~fah~~~pk~~~~vg~lfVy~vd~-l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ 213 (1283)
T KOG1916|consen 135 VGDLQFAHTKCPKGRRLVGELFVYDVDV-LQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNIN 213 (1283)
T ss_pred cccccccccCChHHHHHhhhhheeehHh-hccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeec
Confidence 3456666677788887799999999999 789999999999999998888888888888899999999999999999999
Q ss_pred CCceEEeccCCCCeEEEEEe----------eCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 247 TALRSLLRGHTQRVTDMAFF----------AEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 247 ~~~~~~l~~H~~~V~slaf~----------s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
+.....|++|..++.+++|+ ++||..|+.++.||.+++|.+. +.|+.+..+.........
T Consensus 214 ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy----------i~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 214 RALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY----------ITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred hHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee----------eeccccHhhhhccCCCCC
Confidence 98888889999999998875 4566666666666666666553 222222222222222334
Q ss_pred ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe
Q 039790 317 HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS 396 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs 396 (1395)
...+||+-++..+..+..+...++|+..+.+++..|....++.|.++++++++.....|++.|+.+..+.+-...+++-+
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~ 363 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRS 363 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhh
Confidence 56788988888888888888999999999999999999999999999999999999999999999887776656788889
Q ss_pred CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC-CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc-ccEEEE
Q 039790 397 LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES-WKCTQT 474 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~-pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~-~~~l~t 474 (1395)
.|++|++|.-+.-..+.....|.+++|.+-.|-..+. ++...+++||-.++.+++|-....++|..+++.+. |.|+++
T Consensus 364 v~~~i~~~qn~~a~~~~vs~~~~~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~~g~ls~a~v~~k~rcv~t 443 (1283)
T KOG1916|consen 364 VDGTIKIWQNRKAQPLVVSRPHDGHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSAGEEGWLSPADVESKWRCVQT 443 (1283)
T ss_pred hHHHHHHhhcchhhhhhhhhhhhcceeccccccccCCCccccccccCCcchhhhhhhhhcccccccchhhhhhhHHHhhh
Confidence 9999999987776666666777777888876654433 77888999888899999999998889999999887 999988
Q ss_pred -E-eccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCc
Q 039790 475 -L-ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASP 552 (1395)
Q Consensus 475 -l-~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~ 552 (1395)
+ ............+|++.+.+++..|.++.+ ...+.+|+.++.++.....+.++++.+|....++++|. +. + +
T Consensus 444 klqd~~~~~ePq~~~d~~n~~~als~h~~~~~a-~sr~el~sv~l~~~a~~~e~~~~~~~e~~~p~d~Ls~~-te-~--p 518 (1283)
T KOG1916|consen 444 KLQDLKSSTEPQAEPDFFNQVIALSEHGLLLLA-ASRNELYSVHLDYGASPVETDMDYLSEFTVPMDILSFI-TE-D--P 518 (1283)
T ss_pred hhhhcccccCCccchhhhcchHHHHHHHHHHHh-hhhhhhhhccCCcccCCCcchhhhhhhcCCCccceeec-cC-C--C
Confidence 5 222222223466788888888888887776 56778999999999888888999999999999999998 32 2 2
Q ss_pred CCCCeEEEEEcCCCceeeecccceEEecCCCCCeecccCCCceEEEeecCCCCcceeeccCCCCccccccCCCCCCCccc
Q 039790 553 DGEHIVQIYCVQTQAIQQYALDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLESSHGTKSADVGTTSLVPPILS 632 (1395)
Q Consensus 553 s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~l~~~~sd~~v~~iWD~~tg~~~~~l~g~~~~~~~~~s~~~~~~~~~~ 632 (1395)
...-++++||+++-.+++|... ++..+.++++++..+.+--.+..+-. . -.+.++..+ ++++++..
T Consensus 519 p~~~~~~v~~vqt~alqq~Ta~------p~r~s~Gssss~ssvs~~a~av~sms----~-tsa~kpt~~---~p~P~~l~ 584 (1283)
T KOG1916|consen 519 PEEPTVKVYCVQTLALQQYTAD------PPRESSGSSSSDSSVSREANAVESMS----E-TSAVKPTLL---PPKPSILV 584 (1283)
T ss_pred CCCCCCceeeeehHHHHHHhcC------CcccccCcccchhHHHHHhhhhhhhc----c-cccCCcccC---CCCchhhh
Confidence 4566899999999999998766 44556777777766653111111100 0 000011111 12223333
Q ss_pred CCCCCCCCCCCCCCCCCCcc---cccCcCCCCCCCCCCCCCCCCccccccCC-CCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 039790 633 SSTESVPIASRPEGLPSSEV---SSLSENASGAETKPSALPSGNAENIHSAS-PPLPLSPRLSRKSSGYRSPSNGFEPSA 708 (1395)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1395)
.+++ -.+.++.++ +...+.+...+ +.++...+.+++ |.+|. +++++.|++..+-..+++..
T Consensus 585 ~~s~-------~~n~~S~~a~sass~aa~p~~~~------p~ts~~p~a~~~sp~~pg--q~~S~~Sa~~~~v~~~epv~ 649 (1283)
T KOG1916|consen 585 NRSE-------LANDLSFPASSASSLAAVPPNGE------PKTSGAPSAYALSPQLPG--QLSSKLSAYHTPVEAVEPVG 649 (1283)
T ss_pred ccHh-------hhhccCCCccccccccccCCCCC------CCCCCCCcccccCCCCCC--cccchhhhhhhhHHhhcccC
Confidence 3333 223444444 22222222222 333333344443 66665 88899999999999999988
Q ss_pred CCCCCCCcccccccccccccccccccccCCCCCCCCCCccCCCCcCCC-CccCCCCCcccCCCCcccChhhhhccccCCC
Q 039790 709 QPNEHGSEQAVTDYSVDRRTNTSKEKMADVPSSGDNLWKGDRNSAQND-ISMVPDPPVVFKHPTHLVTPSEILSTAASSS 787 (1395)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1395)
+....+++..+.|| +.++++++...+.|....+.+.|+.+.+...++ .++..+|.- ||||++| ..+.+
T Consensus 650 ~~~~~~~~t~s~d~-vi~~~~~v~~r~~~~~s~e~~sR~k~s~v~~~~e~~~m~s~as----~~hl~SP------~~~~~ 718 (1283)
T KOG1916|consen 650 PHHALGGKTRSADY-VIRQADTVGSRNLDVSSVEELSRSKDSNVTPDDEVSGMRSPAS----PTHLVSP------VSSPE 718 (1283)
T ss_pred CcccCCCCCcchHH-HhhhcchhhcccchhHHHHHhhhcccCCCCCCCCcchhhCccc----ccccCCC------CCCcc
Confidence 88888899999999 889999999988888777777776555444333 555555543 7899999 22333
Q ss_pred CcccccccccccccccccccccCCCCcceeEEEEecccCCccc-cccc-cccchhhhhhhhccccccccccccccccccc
Q 039790 788 ENSQFSQRMNVGEAKVQDAVVNNDAEGVEVEVKVVGETGGLKN-EFNS-RESHATVTEKKEKSFYSQASDLGIQMARDCC 865 (1395)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1395)
+.+++ +...+.+++++|+ +||...-|+|+|.+++....|+ +..- .+.++-..|.+|..||+|++.+...|+|+|+
T Consensus 719 ~~i~t-qd~~D~~~~~~d~--~ndp~dlE~el~~~ss~~~sqv~~t~p~it~e~cSse~~~~~~~sQa~~~S~~~~rppy 795 (1283)
T KOG1916|consen 719 ASITT-QDGRDRDANIGDV--NNDPRDLEVELKEESSAPDSQVGETNPHITTENCSSEAREPRFCSQASNLSTEMARPPY 795 (1283)
T ss_pred ccccc-ccccccCcccccc--cCCcchhHHHHHhccCCCccccCCCCCcccccccchhhhhhhHHHHhhhhccccCCCCc
Confidence 33443 6677888999886 8999999999999999998888 4444 4445556677799999999999999999885
Q ss_pred CccccccCccccCcccccCCCCCCCCccccccCCCCCcccCcccccccccCCCCccccccccCCCCCCCCCCCCCCCCCC
Q 039790 866 MGTYNVDGIRQASDVEAQDRPSNNGEVEEQDMSKDTPAKVGASEASMVILQSPSPAAKGRKQKGKNSQISGTSSPSPSPY 945 (1395)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1395)
. ..++...-++..+...+-+++++-.. ..+..+.|..+++ .+ +|+||+|+++.|.+|-++.+.--.
T Consensus 796 ~---~t~g~~~~~~S~~~s~~~~~~a~~~s-~S~g~sak~p~~~---------l~-ak~~k~kg~~~~spgl~~t~s~~~ 861 (1283)
T KOG1916|consen 796 P---LTEGRDIPGASAAYSQPDDAGAELGS-DSRGFSAKLPAPR---------LP-AKGKKQKGKNSQSPGLSSTSSNVA 861 (1283)
T ss_pred c---ccccCCCCCcccccCCccchhhhhcc-ccCCCcccCCCcc---------cc-ccccccCCCcCCCCCccccccchH
Confidence 4 12333333333333344444444333 2444545554433 33 799999999999999998888888
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 039790 946 NSADSSNEPACISGAPSTDATMSQLLAMQDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDAL 1025 (1395)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~~lE~~l~~~~~~~~~~~~~~~ 1025 (1395)
|.+|++++.....+.+..| -++++.++|+.+.||++-|+||++|+..-.. -+||..|++.|||++|.+.|++
T Consensus 862 ~lad~~~~qs~qln~p~ed-~~~~l~~qQe~~a~l~~sQ~el~~~l~~ql~-------g~le~~l~~~iEk~lks~~d~~ 933 (1283)
T KOG1916|consen 862 NLADSFNEQSQQLNHPMED-LLPQLLAQQETMAQLMASQKELQRQLSNQLT-------GPLEVALGRMIEKSLKSNADAL 933 (1283)
T ss_pred HHHHHHHHHHhhhcCChhh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc-------chHHHHHHHHHHHHHHhhHHHH
Confidence 8888988887777656544 5899999999999999999999999887322 2399999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH-hhHHHHHHhhHHHHHHHHHHHHHHHhh-chh
Q 039790 1026 WARFQEENAKHEKLERDRMQQITNLITNTINKDLPAILEKTLKKEIAA-VGPAVARAISPTLEKSISSAIMESFQK-GVG 1103 (1395)
Q Consensus 1026 ~~r~~~~~~~~~~~~~~rq~~ll~~vs~~l~~~~~~~~E~~l~~ei~~-v~P~i~~~~~~~v~~~l~~~v~~~l~~-~v~ 1103 (1395)
|+||+|+.+++|++.|+.+++|++.++++|.+.+++++||+|++||+. |+|+|.+.+.+.+++..++++.+.++. .+.
T Consensus 934 ~~rl~e~la~~e~~~r~~~~qi~q~ltq~~s~~~~~~~e~ti~~El~~tv~P~v~rs~~p~~~q~~~s~itkl~~~eg~~ 1013 (1283)
T KOG1916|consen 934 WARLQEELAKNEKALRDLQQQITQQLTQFLSKELNAMFEKTIKKELAKTVGPCVARSVEPVIEQTVSSAITKLFQREGIG 1013 (1283)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999999999999999999999999999999999999999985 999999999999999999999999998 888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 1104 EKAVSQLEKSVSSKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKHTTAIQQQ 1183 (1395)
Q Consensus 1104 ~~~~~~l~~~v~~~l~~~v~~~i~~~~~~~v~~~i~~~~~~~~~~~liP~fe~~~~~m~~qv~~~~~~~~~e~~~~~q~~ 1183 (1395)
+|-+++|.|+++ |+.+|+++|+++|++++. +|++|+++|+++|||+||++|+.||+||++.|++|+.||+.+...
T Consensus 1014 kenI~ql~KSkn--l~dtvar~i~~~~Qtsg~--lQ~a~resm~SsviPafEKScqaMF~Qi~daF~~Gi~e~~~q~~s- 1088 (1283)
T KOG1916|consen 1014 KENINQLLKSKN--LEDTVARQIQAQFQTSGP--LQEALRESMESSVIPAFEKSCQAMFQQIDDAFQKGIQEHTQQLIS- 1088 (1283)
T ss_pred HHHHHHHHhhcc--HHHHHHHHHHHHHhccch--HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-
Confidence 999999999876 999999999999999988 999999999999999999999999999999999999999974422
Q ss_pred HhhccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccCCCCcccccCCCCCCCCCcc-cccCCCCcHH
Q 039790 1184 FETAHSPMAIALRDAINSATSI--TQTLSGELADGQRKLLAMAAAGANTKTGTSLVTQSSNGPLAGLHE-MVEAPLDPTK 1260 (1395)
Q Consensus 1184 ~~~~~~~l~~~L~~~i~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~p~~~~~~-~~e~~~d~~~ 1260 (1395)
.|++. .+++..|+..-|..++....+.+..+..++-++|...+|...+-+ ..++..+|..
T Consensus 1089 -----------------~~~s~~qr~a~nrE~~~~ql~~L~~t~~sa~~~~~~pl~~~l~~~~~~~~~~a~~~a~~~P~~ 1151 (1283)
T KOG1916|consen 1089 -----------------SASSVPQRQALNRELAEAQLNGLALTAASATEQGSNPLVTQLSAGPVGALLEAMRSAAMTPTT 1151 (1283)
T ss_pred -----------------HHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcchHHHHhcchHHHHHHHHHHccCCcHH
Confidence 22221 144555666666666666555445556666655666666543333 4678889999
Q ss_pred HHHHHhhhccHHHHHHHHhccCChHHHHHHHhcCCCCCccccCCCCcchhHHHHHHHHhhcccccchhhHHHHHHHHHHH
Q 039790 1261 ELSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVA 1340 (1395)
Q Consensus 1261 ~i~~l~~~g~~eeAf~~aL~s~d~~l~~~l~~~~~p~~l~~~~p~~Lsq~vlLsLiqqLs~dL~~~~~~kl~wle~~~~~ 1340 (1395)
+|.|||.+|+|||||+.||+++|++||.|+|+++|...+|.+.||+|+|+|||||||||+||+.+++.+|++||.+|+++
T Consensus 1152 ~i~~ll~~~~~~~af~~al~~~d~~lv~~~~~~~d~~~~~a~~~~~l~q~vllsliqqla~d~s~~~~~k~~~~~~~~~a 1231 (1283)
T KOG1916|consen 1152 EISQLLSEGKYNEAFTQALQASDLSLVSWLCSQVDLRQLFAMNPCPLSQGVLLSLIQQLACDISTDTSLKLRYLTEAVLA 1231 (1283)
T ss_pred HHHHHHhcchHHHHHHHHHHhccchhhhHhhhccCHHHhcCCCCCcchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhhHHHHHHHHHHHhhccccCCCCCccccchHHHHHHHHHHHHhhcC
Q 039790 1341 INPADPMISMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395 (1395)
Q Consensus 1341 l~~~dp~i~~~~p~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1395 (1395)
|||.||+||+|+|+||++||+.|+|++..| |++.+.+|||||+||++|++||
T Consensus 1232 in~sd~~~~~ha~~v~~~~y~~~~~~~~~~---~~~~s~vrlim~~i~s~~~~~k 1283 (1283)
T KOG1916|consen 1232 INPSDPITRVHARPVFEQVYQILHQFRNAP---PSNVSAVRLIMHVINSYLMSLK 1283 (1283)
T ss_pred cCccCchhHhhhhHHHHHHHHHHHHHhcCC---ccchHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999988775 8889999999999999999998
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=341.03 Aligned_cols=327 Identities=16% Similarity=0.184 Sum_probs=262.2
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
++-..+.||.+.|.|++|+|+|.+||+|+.|.++|+||+.+. ...+.++|..+|.||+| +|||..|++|+.||+|++|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaw-sPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAW-SPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEE-CCCcchhhccccCCeEEEe
Confidence 344567899999999999999999999999999999999997 68899999999999999 9999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC----CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK----QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~----~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|..+|.. ....+.+|...|++++|.|-. ...+++++.++-+++|+...+..
T Consensus 185 dpktg~~-------------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~------------ 239 (480)
T KOG0271|consen 185 DPKTGQQ-------------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC------------ 239 (480)
T ss_pred cCCCCCc-------------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE------------
Confidence 9999883 234567889999999998732 23555555444444444443332
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeec-------CCC
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIG-------PHP 434 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~-------~~p 434 (1395)
+..+.+|+..|+|+.|--+| +|++||.|++||+|+...|.++++++||.. +|+.++.+++ .+|
T Consensus 240 -------~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHah-wvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 240 -------VRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAH-WVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred -------EEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccch-heeeeeccchhhhhcccccc
Confidence 67788999999999998665 999999999999999999999999999986 9999998722 112
Q ss_pred CCc-------------------------EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccc
Q 039790 435 QHI-------------------------VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAF 489 (1395)
Q Consensus 435 dg~-------------------------~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~ 489 (1395)
.++ .|+++ ++|.++.+|+-... .+++..+.+|...+..
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg-sDd~tlflW~p~~~-----------kkpi~rmtgHq~lVn~----- 372 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSG-SDDFTLFLWNPFKS-----------KKPITRMTGHQALVNH----- 372 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEe-cCCceEEEeccccc-----------ccchhhhhchhhheee-----
Confidence 333 47875 59999999987533 3678888888876543
Q ss_pred cceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccc-cEEE--EecCCCCcC--cCCCCeEEEEEcC
Q 039790 490 FNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTM-PILS--LTGTTTDAS--PDGEHIVQIYCVQ 564 (1395)
Q Consensus 490 ~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~-~ils--~~~~~~d~~--~s~dg~V~lWdv~ 564 (1395)
+.||||+++|++++.|..|++|+-.+|+ +++.|.+|. +++- +...+ ..+ .+.|.++++|+++
T Consensus 373 ----V~fSPd~r~IASaSFDkSVkLW~g~tGk--------~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 373 ----VSFSPDGRYIASASFDKSVKLWDGRTGK--------FLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred ----EEECCCccEEEEeecccceeeeeCCCcc--------hhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEee
Confidence 9999999999999999999999999886 677777663 3333 33332 223 3678999999999
Q ss_pred CCceee---ecccceEEecCCCCC--eecccCCCceEEEee
Q 039790 565 TQAIQQ---YALDLSQCLPPPLEN--AELEKTDSNATRAFD 600 (1395)
Q Consensus 565 t~~i~~---~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD 600 (1395)
++++.+ .|.+-+.|+-.++|+ ++.++ -++++++|-
T Consensus 440 tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg-kdkv~~lw~ 479 (480)
T KOG0271|consen 440 TKKLKQDLPGHADEVFAVDWSPDGQRVASGG-KDKVLRLWR 479 (480)
T ss_pred eeeecccCCCCCceEEEEEecCCCceeecCC-CceEEEeec
Confidence 999843 467778899999887 55555 458999993
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-37 Score=339.98 Aligned_cols=312 Identities=20% Similarity=0.285 Sum_probs=254.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.++|.+..|++|+.|.++|+||+. ..+++.+.++|..+|.|++|+|||+.|
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~----------------------------TeTp~~t~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLD----------------------------TETPLFTCKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccC----------------------------CCCcceeecCCccEEEEEEECCCcchh
Confidence 5667777899999999999999954 126889999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEee----CCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 232 CYGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFA----EDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s----~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
|+|+.||.|++||.++|. ...|.+|+..|++++|.+ +...+|++++.||+|+|||+..+.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-------------- 238 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-------------- 238 (480)
T ss_pred hccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce--------------
Confidence 999999999999999884 568999999999999942 456799999999999999999887
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
++....+|...|+|++|-.++ ++.+|+.++.+++|....+.. ++.+.||..+|+.++++
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~-------------------~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKL-------------------CRELKGHAHWVNHLALS 297 (480)
T ss_pred EEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhH-------------------HHhhcccchheeeeecc
Confidence 677888999999999996554 555555555555554333332 57788999999999887
Q ss_pred cC-----------C------------------------CcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEe
Q 039790 386 QW-----------L------------------------TTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 386 pd-----------g------------------------~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs 429 (1395)
.| + +.+|++|+.|.++.+|+-.. .+++..+.+|.. -|+.|.||
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fS 376 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFS 376 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh-heeeEEEC
Confidence 22 2 23699999999999999665 468999999997 99999999
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK 509 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D 509 (1395)
||++++++++ .|..|++||.++| +.+.+|.+|-..++. ++|+.|.++|++|+.|
T Consensus 377 ----Pd~r~IASaS-FDkSVkLW~g~tG------------k~lasfRGHv~~VYq---------vawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 377 ----PDGRYIASAS-FDKSVKLWDGRTG------------KFLASFRGHVAAVYQ---------VAWSADSRLLVSGSKD 430 (480)
T ss_pred ----CCccEEEEee-cccceeeeeCCCc------------chhhhhhhccceeEE---------EEeccCccEEEEcCCC
Confidence 9999999966 9999999999999 999999999988765 9999999999999999
Q ss_pred CeEEEEEcCCCCCCCCcceeeeeeeecc-ccEEEEecCCCCcC--c--CCCCeEEEEE
Q 039790 510 NAIYAIHMDYGPNPASTRMDYIAEFTVT-MPILSLTGTTTDAS--P--DGEHIVQIYC 562 (1395)
Q Consensus 510 g~I~iWdl~~g~~~~~~~~~~i~~f~~~-~~ils~~~~~~d~~--~--s~dg~V~lWd 562 (1395)
.++++|++.+.+. .....++ .-++.++-.. |+- . ..|..++||.
T Consensus 431 sTLKvw~V~tkKl--------~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKKL--------KQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeeee--------cccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 9999999987431 1222222 3455555444 332 2 3478899984
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-35 Score=327.90 Aligned_cols=275 Identities=16% Similarity=0.211 Sum_probs=241.9
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC--C
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN--R 228 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd--g 228 (1395)
..+++.++..|+|+|.+|.+++|+.. .+..+.+|.||...|.++.|+|. +
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~----------------------------~~~~~~~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVP----------------------------QCNLLQTLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecC----------------------------CcceeEEEeccccceeeEEEccCCCc
Confidence 36677788999999999999999932 22567889999999999999996 6
Q ss_pred CEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 229 NYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
..||+|+.||+|++|++++. .+..|.+|..+|..++| .|+|++|+|++.|.+-++||+.++. .+
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~Vaf-HPsG~~L~TasfD~tWRlWD~~tk~--------------El 296 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAF-HPSGKFLGTASFDSTWRLWDLETKS--------------EL 296 (459)
T ss_pred cceeeeccCCceeeeccCCCcchhhhhcchhhheeeee-cCCCceeeecccccchhhcccccch--------------hh
Confidence 78999999999999999985 68899999999999999 8999999999999999999999987 33
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
-...+|...|.+|+|+++|. ++++|.-+.+-++|+.+.++. +..+.+|.+.|.+|+|+|+
T Consensus 297 L~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~-------------------im~L~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRC-------------------IMFLAGHIKEILSVAFSPN 356 (459)
T ss_pred HhhcccccccceeEecCCCc-eeeccCccchhheeecccCcE-------------------EEEecccccceeeEeECCC
Confidence 45568899999999999997 555555555555555555543 6788999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC-CCcEEEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP-QHIVLITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p-dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
| ..|||||.|++++|||++...++.++.+|.+ -|+.|+|+ | .|.+|++++ .|++++||...+.
T Consensus 357 G-y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~----p~~g~fL~Tas-yD~t~kiWs~~~~--------- 420 (459)
T KOG0272|consen 357 G-YHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYS----PQEGYFLVTAS-YDNTVKIWSTRTW--------- 420 (459)
T ss_pred c-eEEeecCCCCcEEEeeecccccceecccccc-hhhheEec----ccCCeEEEEcc-cCcceeeecCCCc---------
Confidence 9 9999999999999999999999999999998 99999999 7 677788766 9999999998766
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.+++++.+|.+.+.+ +.+++||.+|++++.|++|++|.
T Consensus 421 ---~~~ksLaGHe~kV~s---------~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 ---SPLKSLAGHEGKVIS---------LDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---ccchhhcCCccceEE---------EEeccCCceEEEeccCceeeecc
Confidence 999999999988755 89999999999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.5e-34 Score=316.25 Aligned_cols=280 Identities=20% Similarity=0.261 Sum_probs=236.1
Q ss_pred eCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCC
Q 039790 213 ISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
-+....|..+.|+.|++.||+|+.+|.++||+..+. .+.+|+||+..|.++.|++- ++..||||+.||+|++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 356788999999999999999999999999999887 58899999999999999665 3779999999999999999976
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
. .+..+.+|...|..++|||+|.++..++.|..-.+||... +.. +.
T Consensus 252 ~--------------~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~E-------------------lL 297 (459)
T KOG0272|consen 252 T--------------PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSE-------------------LL 297 (459)
T ss_pred c--------------chhhhhcchhhheeeeecCCCceeeecccccchhhccccc-chh-------------------hH
Confidence 5 4556678889999999999998777766666655555533 221 45
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
...||...|.+++|.+|| .+++||+.|..-||||+|+|.++..|.||.. .|.+|.|+ |+|..|++|| .|++++
T Consensus 298 ~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fs----PNGy~lATgs-~Dnt~k 370 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFS----PNGYHLATGS-SDNTCK 370 (459)
T ss_pred hhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEeccccc-ceeeEeEC----CCceEEeecC-CCCcEE
Confidence 567899999999999999 8999999999999999999999999999998 99999999 9999999966 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCCCCCccee
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKKNAIYAIHMDYGPNPASTRMD 529 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~ 529 (1395)
|||++.. .++.++.+|.+.+.. +.|++ .|.+|++++.|++++||.-.+.. .++
T Consensus 371 VWDLR~r------------~~ly~ipAH~nlVS~---------Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-----~~k 424 (459)
T KOG0272|consen 371 VWDLRMR------------SELYTIPAHSNLVSQ---------VKYSPQEGYFLVTASYDNTVKIWSTRTWS-----PLK 424 (459)
T ss_pred Eeeeccc------------ccceecccccchhhh---------eEecccCCeEEEEcccCcceeeecCCCcc-----cch
Confidence 9999988 889999999987765 88887 89999999999999999976643 233
Q ss_pred eeeeeeccccEEEEecCCCCcC----cCCCCeEEEEE
Q 039790 530 YIAEFTVTMPILSLTGTTTDAS----PDGEHIVQIYC 562 (1395)
Q Consensus 530 ~i~~f~~~~~ils~~~~~~d~~----~s~dg~V~lWd 562 (1395)
.+..+. ..++++++.. ++. .+.|+++++|.
T Consensus 425 sLaGHe--~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 SLAGHE--GKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhcCCc--cceEEEEecc-CCceEEEeccCceeeecc
Confidence 333333 4567777776 542 46789999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-31 Score=283.56 Aligned_cols=284 Identities=20% Similarity=0.251 Sum_probs=229.5
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEc
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLK 236 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~ 236 (1395)
.+..|++++.|.++-+|++.+- +.. -+.+++.|+||...|..+.+++||+|.++|+.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d------------d~~-----------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD------------DIK-----------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred CCceEEEcccceEEEEEEeccC------------ccc-----------cCceeeeeeccceEecceEEccCCceEEeccc
Confidence 3478999999999999995421 111 23678899999999999999999999999999
Q ss_pred CCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC-C
Q 039790 237 LGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG-D 314 (1395)
Q Consensus 237 DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~-~ 314 (1395)
||++|+||+.++ ..+.|.||...|.+++| ++|...|+||+.|.+|++|++.... .+....+. .
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~-s~dn~qivSGSrDkTiklwnt~g~c--------------k~t~~~~~~~ 148 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAF-STDNRQIVSGSRDKTIKLWNTLGVC--------------KYTIHEDSHR 148 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEe-cCCCceeecCCCcceeeeeeecccE--------------EEEEecCCCc
Confidence 999999999997 47899999999999999 9999999999999999999998643 23333333 7
Q ss_pred CCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 315 SVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 315 ~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
..|.+++|+|.. +.+++.++.++.+++|+....+. ...+.||.+.++.+++|||| .+++
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-------------------~~~~~gh~~~v~t~~vSpDG-slca 208 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-------------------RTTFIGHSGYVNTVTVSPDG-SLCA 208 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-------------------hhccccccccEEEEEECCCC-CEEe
Confidence 889999999995 34455555444444444332221 35567899999999999999 8999
Q ss_pred EEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEE
Q 039790 394 SASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQ 473 (1395)
Q Consensus 394 Sgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~ 473 (1395)
+|+.||.+.+||++.++++.++.+.. .|.+++|+ |+..+|+. + .+..|+|||+.++ .++.
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~a~~--~v~sl~fs----pnrywL~~-a-t~~sIkIwdl~~~------------~~v~ 268 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLEAFD--IVNSLCFS----PNRYWLCA-A-TATSIKIWDLESK------------AVVE 268 (315)
T ss_pred cCCCCceEEEEEccCCceeEeccCCC--eEeeEEec----CCceeEee-c-cCCceEEEeccch------------hhhh
Confidence 99999999999999999999997553 79999999 87766665 4 5778999999988 8887
Q ss_pred EEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 474 TLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 474 tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+|+..............+-.++|+.||..|++|..||.|++|.+.
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 776554333222334556689999999999999999999999875
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=2.8e-29 Score=294.91 Aligned_cols=427 Identities=16% Similarity=0.208 Sum_probs=306.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEe-------------------CcCCCCCee-eeCceEEEEEeccCCCcc-Cccccccee
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRS-------------------SKVPKGRHL-IGNHSVYDIDVRLDGEVQ-PQLEVTPIT 210 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd-------------------~~sp~Gr~L-~G~~~v~~v~~~~~G~~~-~~~~~~~i~ 210 (1395)
.+.+|.+..|+.....|.+-+.+ .|+|+|+.+ .+...+..++.. +|+.. .-......+
T Consensus 61 ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~-P~~~~~~~~pFvl~r 139 (893)
T KOG0291|consen 61 IALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHA-PGEIKNEFNPFVLHR 139 (893)
T ss_pred EEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEec-CcchhcccCcceEee
Confidence 45566666676666665554443 277899988 554444433332 23322 233456778
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
++.+|.+.|.++.|+-|.++|++|++|.++|||+++.. ....+.+|++.|..+-| ..+...|++.+.||.+.+|..
T Consensus 140 ~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF-~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF-GANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred eecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEe-ccCcceEEEEecCceEEEEEe
Confidence 99999999999999999999999999999999999875 36688999999999988 888889999999999999998
Q ss_pred CCCCCCCCC-------------------cccccceEEE-EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEE-cCCC
Q 039790 288 TEGPDEEDK-------------------PQILGKIVVA-IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKID-SNRV 346 (1395)
Q Consensus 288 ~tg~~~~~~-------------------~~~~~~~i~~-l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d-~~~~ 346 (1395)
......... ......+... ...+......+++..||+.- .++++|...+++.+. ....
T Consensus 219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~f 297 (893)
T KOG0291|consen 219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPDF 297 (893)
T ss_pred cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc-eEEEEEecCCeeEEEecCCc
Confidence 732110000 0011122222 22333444778888888865 577777766655332 2111
Q ss_pred --------Cc----cccccCCCC-----------CccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 039790 347 --------GK----GERFSAEEP-----------LKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI 403 (1395)
Q Consensus 347 --------~~----~~~~s~~~~-----------~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrI 403 (1395)
+. ...|+..+. +.+.-|....-+....+|...+++++++||| .++|+|+.||.|||
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKV 376 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEE
Confidence 10 011221111 1122233333355567899999999999999 89999999999999
Q ss_pred EeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc
Q 039790 404 WDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL 483 (1395)
Q Consensus 404 WDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~ 483 (1395)
||..+|-|+.+|..|.. .|+.+.|+ ..|+.|++++ .||+|+.||+... ++.++|........
T Consensus 377 Wn~~SgfC~vTFteHts-~Vt~v~f~----~~g~~llssS-LDGtVRAwDlkRY------------rNfRTft~P~p~Qf 438 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTS-GVTAVQFT----ARGNVLLSSS-LDGTVRAWDLKRY------------RNFRTFTSPEPIQF 438 (893)
T ss_pred EeccCceEEEEeccCCC-ceEEEEEE----ecCCEEEEee-cCCeEEeeeeccc------------ceeeeecCCCceee
Confidence 99999999999999998 99999999 8999999876 9999999999887 99999987664332
Q ss_pred cccccccceEEEEeCCCCEEEEEeCCCe-EEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEE
Q 039790 484 RLEDAFFNQVVALNRAGLFLLANAKKNA-IYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQI 560 (1395)
Q Consensus 484 ~~~~~~~~~~l~~S~dg~~LaSgs~Dg~-I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~l 560 (1395)
.+++..+.|.++++|+.|.- |++|++.+|+ .++.+..+.++...++|.... ..+ .+-|.+|++
T Consensus 439 --------scvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 439 --------SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRI 504 (893)
T ss_pred --------eEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCCcceeeEEcccc-CeEEeccccceEEE
Confidence 26888899999999998764 9999999986 466777777766666777665 444 356999999
Q ss_pred EEcCCC--ceeeeccc-ceEEecCC--CCCeecccCCCceEEEeecCCCCcceeeccCCC
Q 039790 561 YCVQTQ--AIQQYALD-LSQCLPPP--LENAELEKTDSNATRAFDVANPDGSASLESSHG 615 (1395)
Q Consensus 561 Wdv~t~--~i~~~~~~-~~~cl~~s--~d~l~~~~sd~~v~~iWD~~tg~~~~~l~g~~~ 615 (1395)
|++-.. ......+. -...+.|. .+.++++..| +.+-+||+..+....+++|.+.
T Consensus 505 W~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTld-gqItf~d~~~~~q~~~IdgrkD 563 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLD-GQITFFDIKEAVQVGSIDGRKD 563 (893)
T ss_pred EEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEec-ceEEEEEhhhceeeccccchhh
Confidence 998765 33333222 13344455 5558888877 5666999999998888886665
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=3.7e-31 Score=315.29 Aligned_cols=250 Identities=18% Similarity=0.262 Sum_probs=221.3
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC--------------------------------CceEEec
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--------------------------------ALRSLLR 254 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~--------------------------------~~~~~l~ 254 (1395)
.+..++..-...+.|..|+.|+.+||.|..|..|++|.+.. +....+.
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 44445555557899999999999999999999999998762 1234688
Q ss_pred cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe
Q 039790 255 GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 255 ~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
||.++|+.+.| +|+.++|++|+.|++||+|.+.+.. ++..+.+|..+|..+.|+|.| +.|++++
T Consensus 449 GH~GPVyg~sF-sPd~rfLlScSED~svRLWsl~t~s--------------~~V~y~GH~~PVwdV~F~P~G-yYFatas 512 (707)
T KOG0263|consen 449 GHSGPVYGCSF-SPDRRFLLSCSEDSSVRLWSLDTWS--------------CLVIYKGHLAPVWDVQFAPRG-YYFATAS 512 (707)
T ss_pred cCCCceeeeee-cccccceeeccCCcceeeeecccce--------------eEEEecCCCcceeeEEecCCc-eEEEecC
Confidence 99999999999 9999999999999999999999876 677788999999999999997 6667777
Q ss_pred CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE
Q 039790 335 GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV 414 (1395)
Q Consensus 335 ~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t 414 (1395)
++++-++|.... ..+.+++.+|-..|.|+.|+|+. .|+++||.|.+||+||+.+|..++.
T Consensus 513 ~D~tArLWs~d~-------------------~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 513 HDQTARLWSTDH-------------------NKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRI 572 (707)
T ss_pred CCceeeeeeccc-------------------CCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEE
Confidence 777777776443 23478889999999999999998 8999999999999999999999999
Q ss_pred ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEE
Q 039790 415 LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVV 494 (1395)
Q Consensus 415 l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l 494 (1395)
|.||.+ +|.+|+|| |+|++|++++ .||.|+|||+.++ +.+..+.+|.+.+. .+
T Consensus 573 F~GH~~-~V~al~~S----p~Gr~LaSg~-ed~~I~iWDl~~~------------~~v~~l~~Ht~ti~---------Sl 625 (707)
T KOG0263|consen 573 FTGHKG-PVTALAFS----PCGRYLASGD-EDGLIKIWDLANG------------SLVKQLKGHTGTIY---------SL 625 (707)
T ss_pred ecCCCC-ceEEEEEc----CCCceEeecc-cCCcEEEEEcCCC------------cchhhhhcccCcee---------EE
Confidence 999998 99999999 9999999976 9999999999999 89999999976654 49
Q ss_pred EEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 495 ALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 495 ~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.|+.||.+||+|+.|++|++||+..
T Consensus 626 sFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 626 SFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999876
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=9.7e-30 Score=265.81 Aligned_cols=273 Identities=18% Similarity=0.204 Sum_probs=230.4
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL 237 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D 237 (1395)
+-.|+++|.|.+||+|... .+.+.+++......|..+.+.||+++||+|+.
T Consensus 10 ~viLvsA~YDhTIRfWqa~----------------------------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~- 60 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQAL----------------------------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN- 60 (311)
T ss_pred ceEEEeccCcceeeeeehh----------------------------cCeEEEEEecCccceeeEEEcCCcchhhhccC-
Confidence 4789999999999999943 33567777777789999999999999999987
Q ss_pred CeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
-.||+||++++ .+.+|.+|+..|..+.| ..+|++++|||+||+++|||++...+ +-...+.
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF-~~dgrWMyTgseDgt~kIWdlR~~~~---------------qR~~~~~ 124 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGF-QCDGRWMYTGSEDGTVKIWDLRSLSC---------------QRNYQHN 124 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEE-eecCeEEEecCCCceEEEEeccCccc---------------chhccCC
Confidence 68999999986 58899999999999999 89999999999999999999998542 2223455
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
..|++++.+|+..++|++..++.|.+||.....-. ...+..-...|.+++..+|| .+|+.
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~-------------------~~liPe~~~~i~sl~v~~dg-sml~a 184 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT-------------------HELIPEDDTSIQSLTVMPDG-SMLAA 184 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCccc-------------------cccCCCCCcceeeEEEcCCC-cEEEE
Confidence 88999999999999999999999999998653211 12233345689999999999 89999
Q ss_pred EeCCCcEEEEeCCCC------ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 395 ASLDGTVKIWDDRKS------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 395 gs~Dg~IrIWDl~sg------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+...|+..+|++-.+ .++..|+.|.+ .+..+.|| ||+++|++++ .|.+++||+..+.
T Consensus 185 ~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~C~lS----Pd~k~lat~s-sdktv~iwn~~~~----------- 247 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTASELEPVHKFQAHNG-HILRCLLS----PDVKYLATCS-SDKTVKIWNTDDF----------- 247 (311)
T ss_pred ecCCccEEEEEccCCCccccceEhhheecccc-eEEEEEEC----CCCcEEEeec-CCceEEEEecCCc-----------
Confidence 999999999998654 57778999998 99999999 9999999987 9999999998753
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.+....+++|...+ ..++||.||.||++++.|+.+++|++..++
T Consensus 248 ~kle~~l~gh~rWv---------Wdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 248 FKLELVLTGHQRWV---------WDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eeeEEEeecCCceE---------EeeeeccCccEEEecCCCCceeecccccCc
Confidence 25556677776544 349999999999999999999999999876
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=3.1e-29 Score=267.65 Aligned_cols=295 Identities=15% Similarity=0.174 Sum_probs=232.8
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
..+..+++++|.+.|+++.|++|.++|++++.||.+.|||..+. +.+.+.--..+|..++| +|.|+++++||.|....
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~-sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAY-SPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEE-CCCCCeEEecCcCceeE
Confidence 33556899999999999999999999999999999999999886 56777777889999999 99999999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
||++.+... ...+...+.+.+|.+++.++.|-.++ .|+.++.+.+...||... +..
T Consensus 123 iy~ls~~d~--------~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~-g~~-------------- 178 (343)
T KOG0286|consen 123 IYPLSTRDA--------EGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIET-GQQ-------------- 178 (343)
T ss_pred EEecccccc--------cccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEccc-ceE--------------
Confidence 999997641 12233456678899999999998754 566655555555665533 321
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+..|.||.+.|.+++++|..++.|++|+.|++.+|||+|.+.++++|.+|.. .|++|+|. |+|.-+++ |
T Consensus 179 -----~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ff----P~G~afat-G 247 (343)
T KOG0286|consen 179 -----TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFF----PSGDAFAT-G 247 (343)
T ss_pred -----EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEc----cCCCeeee-c
Confidence 6788999999999999994449999999999999999999999999999998 99999998 99999998 5
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
++|+++|+||++.. +.+..|.... . .+....++||..|++|++|..|.++.+||.-.++
T Consensus 248 SDD~tcRlyDlRaD------------~~~a~ys~~~-~------~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e-- 306 (343)
T KOG0286|consen 248 SDDATCRLYDLRAD------------QELAVYSHDS-I------ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE-- 306 (343)
T ss_pred CCCceeEEEeecCC------------cEEeeeccCc-c------cCCceeEEEcccccEEEeeecCCceeEeeccccc--
Confidence 59999999999988 7777776322 1 1233479999999999999999999999987654
Q ss_pred CCcceeeeeeeeccccEEEEecCCCCcC----cCCCCeEEEEE
Q 039790 524 ASTRMDYIAEFTVTMPILSLTGTTTDAS----PDGEHIVQIYC 562 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~~~ils~~~~~~d~~----~s~dg~V~lWd 562 (1395)
+ +....+|...++.-+...|+. .+-|..++||.
T Consensus 307 ---~---vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 307 ---R---VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ---e---EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 2 222334433333333222322 34567777773
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.1e-29 Score=285.56 Aligned_cols=246 Identities=20% Similarity=0.255 Sum_probs=213.0
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
...|++++|+.+|.+||+|+.||.+|||+...+...+|..|+++|.+|.| ..+|+||++++.||++.+||..++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKW-nk~G~yilS~~vD~ttilwd~~~g~---- 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKW-NKKGTYILSGGVDGTTILWDAHTGT---- 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEE-cCCCCEEEeccCCccEEEEeccCce----
Confidence 46899999999999999999999999999999999999999999999999 8999999999999999999999887
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
..+.+.-|......|.|-.+. .++.++.++.|.++..... .+...+.+|
T Consensus 310 ----------~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~--------------------~P~~t~~GH 358 (524)
T KOG0273|consen 310 ----------VKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED--------------------RPVKTFIGH 358 (524)
T ss_pred ----------EEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCC--------------------Ccceeeecc
Confidence 445555566665678887665 4667777777777755332 226778889
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC----C-CCcEEEEEecCCCeEE
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH----P-QHIVLITGGPLNRELK 450 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~----p-dg~~L~s~Gs~Dg~I~ 450 (1395)
.+.|.+|.|+|.| .+|+++|.|++++||....+.+...|.+|.. .|+.+.|+|... | ++..+++++ .|++|+
T Consensus 359 ~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~ 435 (524)
T KOG0273|consen 359 HGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVK 435 (524)
T ss_pred cCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEee-cCCeEE
Confidence 9999999999998 8999999999999999999999999999997 999999993211 1 234677766 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+||+..+ .|+.+|..|...++. ++|+++|++|++|+.||.|.+|+..+++
T Consensus 436 lwdv~~g------------v~i~~f~kH~~pVys---------vafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 436 LWDVESG------------VPIHTLMKHQEPVYS---------VAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred EEEccCC------------ceeEeeccCCCceEE---------EEecCCCcEEEecCCCCeeEeccccchh
Confidence 9999998 999999999988765 9999999999999999999999998865
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=3e-29 Score=267.74 Aligned_cols=274 Identities=15% Similarity=0.153 Sum_probs=231.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..+.++...|+++|.||.+-+||.+..+ ....+.-...+|..++|+|.|+++
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~Ttn----------------------------K~haipl~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTN----------------------------KVHAIPLPSSWVMTCAYSPSGNFV 112 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEccccc----------------------------ceeEEecCceeEEEEEECCCCCeE
Confidence 5566777888888888888888855211 112222345789999999999999
Q ss_pred EEEEcCCeEEEEECCCC-------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 232 CYGLKLGNIRILNIITA-------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
|+|+-|....||++.+. ..+.+.+|++.+.++.| .. ...|+|++.|.++.+||+++|+
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f-~d-D~~ilT~SGD~TCalWDie~g~------------- 177 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF-LD-DNHILTGSGDMTCALWDIETGQ------------- 177 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEE-cC-CCceEecCCCceEEEEEcccce-------------
Confidence 99999999999999853 35579999999999999 44 5679999999999999999998
Q ss_pred EEEEEecCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE
Q 039790 305 VAIQILADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla 383 (1395)
.+..+.+|...|.++.+.| +++.++.++.++...+||.+.. .. ++.|.+|...|++|.
T Consensus 178 -~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c-------------------~qtF~ghesDINsv~ 236 (343)
T KOG0286|consen 178 -QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QC-------------------VQTFEGHESDINSVR 236 (343)
T ss_pred -EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ce-------------------eEeecccccccceEE
Confidence 6778889999999999999 6666666666777777776443 22 789999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC-CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD-GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
|.|+| .-|++|+.|++.|+||+|..+.+..|.... ..+|++|+|| -.|++|+++. .|.++.+||.-.+
T Consensus 237 ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS----~SGRlLfagy-~d~~c~vWDtlk~----- 305 (343)
T KOG0286|consen 237 FFPSG-DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS----KSGRLLFAGY-DDFTCNVWDTLKG----- 305 (343)
T ss_pred EccCC-CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc----ccccEEEeee-cCCceeEeecccc-----
Confidence 99999 899999999999999999999888887432 1279999999 8999999976 9999999999888
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+.+..|.+|...+.+ +..++||.-|++|+.|..++||.
T Consensus 306 -------e~vg~L~GHeNRvSc---------l~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 -------ERVGVLAGHENRVSC---------LGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -------ceEEEeeccCCeeEE---------EEECCCCcEEEecchhHheeecC
Confidence 888999999988754 99999999999999999999994
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.1e-27 Score=272.53 Aligned_cols=358 Identities=13% Similarity=0.181 Sum_probs=262.3
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEec---cCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLR---GHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~---~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..|...|.|+.|+|||.++++.+.||.|.|||=.+|+ +..|. +|.+.|++|+| +||+..|+|++.|.+++||
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW-sPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW-SPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE-CCCCceEEEecCCceEEEE
Confidence 3556799999999999999999999999999999999985 55666 89999999999 9999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++++ ..+..-..-+..-..+.|- +..|+++..++.+..++.....
T Consensus 263 dVs~~slv-----------~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~------------------ 311 (603)
T KOG0318|consen 263 DVSTNSLV-----------STWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS------------------ 311 (603)
T ss_pred EeeccceE-----------EEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC------------------
Confidence 99998732 2222222223334456675 5679999999998888764322
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
..+++.||...|++++.++++ .+|.+|+.||.|.-||..+|..-+.. ++|.. .|.+++-+ +...|+++|
T Consensus 312 --~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~n-qI~~~~~~-----~~~~~~t~g- 381 (603)
T KOG0318|consen 312 --VLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTN-QIKGMAAS-----ESGELFTIG- 381 (603)
T ss_pred --hhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccc-eEEEEeec-----CCCcEEEEe-
Confidence 267888999999999999999 89999999999999999999766554 68887 99999986 435677777
Q ss_pred CCCeEEEEECCCCC---CCCCCC---------Cccc-c------cEEEEEeccCcccccccccccceEEEEeCCCCEEEE
Q 039790 445 LNRELKIWASAEEE---GWLLPS---------DIES-W------KCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA 505 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~---~~~~~~---------~~~~-~------~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS 505 (1395)
.|.+|++.++..+. ...... .... . .-+..|..+... ......|-..++++++++..++.
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~-~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV-SSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc-eeeccccccceEEEcCCCCEEEE
Confidence 99999999885431 000000 0010 0 111222222222 22345666778999999999999
Q ss_pred EeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCc--CCCCeEEEEEcCCCcee----eecccceEEe
Q 039790 506 NAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASP--DGEHIVQIYCVQTQAIQ----QYALDLSQCL 579 (1395)
Q Consensus 506 gs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~--s~dg~V~lWdv~t~~i~----~~~~~~~~cl 579 (1395)
|+.|+.|+||.+..+... ....+.++.+....+++.... ..++ +..+.|.+||+++++.. .+|.....|+
T Consensus 461 GG~Dgkvhvysl~g~~l~---ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELK---EEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred ecccceEEEEEecCCccc---ceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 999999999999875421 122333444444444444443 3333 45689999999998763 3567778999
Q ss_pred cCCCCC--eecccCCCceEEEeecCCCCcceeeccCCC
Q 039790 580 PPPLEN--AELEKTDSNATRAFDVANPDGSASLESSHG 615 (1395)
Q Consensus 580 ~~s~d~--l~~~~sd~~v~~iWD~~tg~~~~~l~g~~~ 615 (1395)
++++++ ++.++.|.+|+ +|++..-....++.+.|-
T Consensus 537 aWsP~n~~vATGSlDt~Vi-iysv~kP~~~i~iknAH~ 573 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVI-IYSVKKPAKHIIIKNAHL 573 (603)
T ss_pred EeCCCceEEEeccccceEE-EEEccChhhheEeccccc
Confidence 999987 77777887776 999886665555554443
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=7.5e-29 Score=263.66 Aligned_cols=249 Identities=19% Similarity=0.244 Sum_probs=213.4
Q ss_pred ceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 208 PITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
...++.+|.+.|..++..+. ...|++++.|.+|.+|++... ..+.|.||...|.++.. ++||++.++++.||
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~-s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL-SSDGNFALSASWDG 85 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE-ccCCceEEeccccc
Confidence 45678999999999999886 678899999999999998753 47789999999999999 99999999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
++|+||+.+++ +.+.+.+|...|.+++|++++..++.+..++.+..|+.....+
T Consensus 86 ~lrlWDl~~g~--------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck------------ 139 (315)
T KOG0279|consen 86 TLRLWDLATGE--------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK------------ 139 (315)
T ss_pred eEEEEEecCCc--------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE------------
Confidence 99999999987 6677788899999999999999888888888888887744221
Q ss_pred CccccccceEEE--cccCCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 361 PVDELINGVQLV--GKHDGEITELSMCQWL-TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 361 ~~~~~~~~~~~l--~~h~~~V~slafspdg-~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
..+ ..|.+.|+|+.|+|.. .-+|++++.|++||+||+++.+....+.||.+ .++.+++| |||.
T Consensus 140 ---------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vS----pDGs 205 (315)
T KOG0279|consen 140 ---------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVS----PDGS 205 (315)
T ss_pred ---------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEEC----CCCC
Confidence 122 2247899999999984 35999999999999999999999999999998 99999999 9999
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.++++| .||.+.+||++.+ +++.++.... . +..++|+|+..+|+.+. +..|+|||+
T Consensus 206 lcasGg-kdg~~~LwdL~~~------------k~lysl~a~~-~---------v~sl~fspnrywL~~at-~~sIkIwdl 261 (315)
T KOG0279|consen 206 LCASGG-KDGEAMLWDLNEG------------KNLYSLEAFD-I---------VNSLCFSPNRYWLCAAT-ATSIKIWDL 261 (315)
T ss_pred EEecCC-CCceEEEEEccCC------------ceeEeccCCC-e---------EeeEEecCCceeEeecc-CCceEEEec
Confidence 999977 9999999999988 8887776433 2 23699999888877665 556999999
Q ss_pred CCCC
Q 039790 518 DYGP 521 (1395)
Q Consensus 518 ~~g~ 521 (1395)
+.+.
T Consensus 262 ~~~~ 265 (315)
T KOG0279|consen 262 ESKA 265 (315)
T ss_pred cchh
Confidence 8854
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=276.58 Aligned_cols=268 Identities=15% Similarity=0.179 Sum_probs=233.6
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
..+++++.|++|++||.. .+.....++||.+.|.+++|+..|++|++++.|-
T Consensus 121 ~~v~~as~d~tikv~D~~----------------------------tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTE----------------------------TGELERSLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred eEEEEecCCceEEEEEcc----------------------------chhhhhhhhccccceeEEEEecCccEEEecCCcc
Confidence 678889999999999944 1234567889999999999999999999999999
Q ss_pred eEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 239 NIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 239 ~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
.+++||..+. ++..+.+|...|.+++| -|.|++|+||+.|.+|+.|++.+|- ++..+..|...
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f-~P~gd~ilS~srD~tik~We~~tg~--------------cv~t~~~h~ew 237 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFF-LPLGDHILSCSRDNTIKAWECDTGY--------------CVKTFPGHSEW 237 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEE-EecCCeeeecccccceeEEecccce--------------eEEeccCchHh
Confidence 9999999884 68889999999999999 7889999999999999999999987 67788888888
Q ss_pred ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC---------
Q 039790 317 HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW--------- 387 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd--------- 387 (1395)
+..+..+.|| .|+++++.+..+++|....+.. ...+..|.-.|.|++|-|.
T Consensus 238 vr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~-------------------k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 238 VRMVRVNQDG-TIIASCSNDQTLRVWVVATKQC-------------------KAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred EEEEEecCCe-eEEEecCCCceEEEEEeccchh-------------------hhhhhccccceEEEEecccccCcchhhc
Confidence 8888988888 4777777777777776554432 3556778999999999654
Q ss_pred -----CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 388 -----LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 388 -----g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
++.++++++.|++||+||+.+|.|+.++.||.+ +|..++|+ |.|+||+++. +|++|++||+.++
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~----p~Gkyi~Sca-DDktlrvwdl~~~----- 366 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFS----PGGKYILSCA-DDKTLRVWDLKNL----- 366 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEc----CCCeEEEEEe-cCCcEEEEEeccc-----
Confidence 225999999999999999999999999999998 99999999 9999999988 9999999999999
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+|..++..|..- +.++.|+.+..++++|+-|.++++|.
T Consensus 367 -------~cmk~~~ah~hf---------vt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 367 -------QCMKTLEAHEHF---------VTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred -------eeeeccCCCcce---------eEEEecCCCCceEEeccccceeeeee
Confidence 999999977643 44689999999999999999999996
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.9e-29 Score=300.73 Aligned_cols=264 Identities=21% Similarity=0.290 Sum_probs=213.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCC---CccCcccccceeeeeCCCCCEEEEEEecCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDG---EVQPQLEVTPITKYISDPGLVLGRQIAVNR 228 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G---~~~~~~~~~~i~~l~~h~~~V~~va~Spdg 228 (1395)
.-++.++..||.|-.|..|++|++....=+.+-+...+-..++.-.+ ...........+++.||.+.|+++.|+|+.
T Consensus 384 a~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~ 463 (707)
T KOG0263|consen 384 AEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR 463 (707)
T ss_pred EeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc
Confidence 45566778899999999999999653221222111111111000000 011112234456689999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 229 NYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
++|++|+.|++||+|.+.+. ++..++||..+|+++.| +|.|-||||||.|++-++|...... .+
T Consensus 464 rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F-~P~GyYFatas~D~tArLWs~d~~~--------------Pl 528 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQF-APRGYYFATASHDQTARLWSTDHNK--------------PL 528 (707)
T ss_pred cceeeccCCcceeeeecccceeEEEecCCCcceeeEEe-cCCceEEEecCCCceeeeeecccCC--------------ch
Confidence 99999999999999999997 67889999999999999 7999999999999999999998765 67
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
+++.+|-..+.|+.|||+..+++.++.+.++..||... +.. +++|.||.+.|.+++|||+
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~-------------------VRiF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNS-------------------VRIFTGHKGPVTALAFSPC 588 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCC-CcE-------------------EEEecCCCCceEEEEEcCC
Confidence 88889999999999999998777665555555555543 322 7889999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
| ++|++|+.||.|+|||+.+|..+..+.+|.+ .|++|.|+ .||..|+++| .|++|++||+...
T Consensus 589 G-r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS----~dg~vLasgg-~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 589 G-RYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFS----RDGNVLASGG-ADNSVRLWDLTKV 651 (707)
T ss_pred C-ceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEe----cCCCEEEecC-CCCeEEEEEchhh
Confidence 8 9999999999999999999999999999987 99999999 9999999977 9999999999765
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.6e-28 Score=287.30 Aligned_cols=395 Identities=13% Similarity=0.149 Sum_probs=263.9
Q ss_pred CCCCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEE
Q 039790 145 HQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQI 224 (1395)
Q Consensus 145 ~~~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~ 224 (1395)
+.+|.-...+.+.+..|++|+.|+.|++||+. ...++..|+||.+.|..+.|
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~----------------------------~~~~th~fkG~gGvVssl~F 155 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIK----------------------------NGYCTHSFKGHGGVVSSLLF 155 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEee----------------------------CCEEEEEecCCCceEEEEEe
Confidence 34444446666667899999999999999943 12466789999999999999
Q ss_pred ecCCC--EEEEEEcCCeEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 225 AVNRN--YICYGLKLGNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 225 Spdg~--~LasGs~DG~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
.++.+ .|++|..|++|++||+.++ ++.++..|...|++++| .+|+..++++|.|..|.|||+.+-+.....|...
T Consensus 156 ~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~-~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye 234 (775)
T KOG0319|consen 156 HPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAF-SEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE 234 (775)
T ss_pred CCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeee-ccCCceEEEeccCcEEEEeehhhhhhhheechhh
Confidence 99765 4899999999999999965 57889999999999999 8999999999999999999997655433333111
Q ss_pred c---------------ceEEE------EEEe-------------------------------------------------
Q 039790 301 G---------------KIVVA------IQIL------------------------------------------------- 310 (1395)
Q Consensus 301 ~---------------~~i~~------l~~~------------------------------------------------- 310 (1395)
. .++.. ++.+
T Consensus 235 ~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 235 SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 0 01100 0000
Q ss_pred -----cCCCCCccEEEEe-CCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 311 -----ADGDSVHPRVCWH-PHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 311 -----~~~~~~v~~v~~s-p~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
-+..+.|..++|- |+..+++++.....+..++.. ....+.+.||++.|.+++.
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~---------------------~~~c~ii~GH~e~vlSL~~ 373 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLP---------------------TSYCQIIPGHTEAVLSLDV 373 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecC---------------------CCceEEEeCchhheeeeee
Confidence 0001112222221 111222222222222222111 0115688999999999996
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCC----ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKS----TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg----~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
..+| .+|+||+.|.++++|.+..+ .++....+|.+ .|.+|+++ ..+.-+++++|.|++|++|++...+..
T Consensus 374 ~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~-svgava~~----~~~asffvsvS~D~tlK~W~l~~s~~~ 447 (775)
T KOG0319|consen 374 WSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN-SVGAVAGS----KLGASFFVSVSQDCTLKLWDLPKSKET 447 (775)
T ss_pred cccC-cEEEEecCCceEEEEEecCCcchhhhhhhhccccc-ccceeeec----ccCccEEEEecCCceEEEecCCCcccc
Confidence 5666 79999999999999977443 46677889998 99999998 555444444569999999999763110
Q ss_pred CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccE
Q 039790 461 LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPI 540 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~i 540 (1395)
.. .-..+|..+...|...+. +++++|+..+|++|+.|.+.+||+++.+. ....+..++-....
T Consensus 448 ~~---~~~~~~~~t~~aHdKdIN---------~Vaia~ndkLiAT~SqDktaKiW~le~~~-----l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 448 AF---PIVLTCRYTERAHDKDIN---------CVAIAPNDKLIATGSQDKTAKIWDLEQLR-----LLGVLSGHTRGVWC 510 (775)
T ss_pred cc---cceehhhHHHHhhccccc---------ceEecCCCceEEecccccceeeecccCce-----EEEEeeCCccceEE
Confidence 00 000112223345655554 49999999999999999999999998422 23334444433444
Q ss_pred EEEecCCCCcC---cCCCCeEEEEEcCCCce-eeec--ccceE-EecCCCCC-eecccCCCceEEEeecCCCCcceeecc
Q 039790 541 LSLTGTTTDAS---PDGEHIVQIYCVQTQAI-QQYA--LDLSQ-CLPPPLEN-AELEKTDSNATRAFDVANPDGSASLES 612 (1395)
Q Consensus 541 ls~~~~~~d~~---~s~dg~V~lWdv~t~~i-~~~~--~~~~~-cl~~s~d~-l~~~~sd~~v~~iWD~~tg~~~~~l~g 612 (1395)
++|.-. |.+ .++|++|+||.+.+... ..+. ...+. |.....+. +.++++| +.+++|++.|++|..+|++
T Consensus 511 V~Fs~~--dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad-GliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 511 VSFSKN--DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD-GLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred EEeccc--cceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC-CcEEEEeccchhhhhhhhh
Confidence 555544 332 58999999999999864 3332 22222 22233333 6666666 7777999999999999994
Q ss_pred CCC
Q 039790 613 SHG 615 (1395)
Q Consensus 613 ~~~ 615 (1395)
|..
T Consensus 588 H~D 590 (775)
T KOG0319|consen 588 HND 590 (775)
T ss_pred ccc
Confidence 443
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5e-28 Score=284.92 Aligned_cols=314 Identities=18% Similarity=0.231 Sum_probs=243.3
Q ss_pred CeEEeecCCCCEEEEeCcC---------CCCCee------eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEE
Q 039790 159 DSTVVIPSAPPVRLRSSKV---------PKGRHL------IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQ 223 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~s---------p~Gr~L------~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va 223 (1395)
..+.|+|.+|.++.|+..+ +++.-+ .+...+..+.....-..+..-+.+.+..+-|..+.|.++.
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence 5899999999999999432 111111 1111111111110000000123456667788889999988
Q ss_pred E-ecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 224 I-AVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 224 ~-Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
| .++.++||+++..+.+|+|+..+.....+.||++.|.++.. ..+|.+|+||+.|.++++|.+.++.+
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~-~~~g~llat~sKD~svilWr~~~~~~---------- 399 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDV-WSSGDLLATGSKDKSVILWRLNNNCS---------- 399 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeee-cccCcEEEEecCCceEEEEEecCCcc----------
Confidence 6 56889999999999999999988777799999999999995 46778999999999999999954431
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
...++....+|...+.+++++..+..+|++++.+.++.+|.....+...+ ...+.| ......|+..|+|+
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~~~~--------~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIVLTC--------RYTERAHDKDINCV 469 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--cceehh--------hHHHHhhcccccce
Confidence 12345566788999999999888888888888888777776544222111 001111 12345699999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
+++|++ .+|||||.|++.+||++..+..+.+|.||.. .|++|.|+ +..+.|++++ .|++||||.+.+.
T Consensus 470 aia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~R-Gvw~V~Fs----~~dq~laT~S-gD~TvKIW~is~f----- 537 (775)
T KOG0319|consen 470 AIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-GVWCVSFS----KNDQLLATCS-GDKTVKIWSISTF----- 537 (775)
T ss_pred EecCCC-ceEEecccccceeeecccCceEEEEeeCCcc-ceEEEEec----cccceeEecc-CCceEEEEEeccc-----
Confidence 999998 8999999999999999999999999999997 99999999 8888999865 9999999999998
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.|+++|.+|...+.. +.|-.+|..|++++.||.|++|++.++.
T Consensus 538 -------SClkT~eGH~~aVlr---------a~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 538 -------SCLKTFEGHTSAVLR---------ASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred -------eeeeeecCccceeEe---------eeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 999999999988765 7888999999999999999999998853
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=2.6e-29 Score=278.29 Aligned_cols=278 Identities=18% Similarity=0.214 Sum_probs=225.2
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
.+.+.|.+..|++|+..|.+.+|+.. .+.+ -..+..|...|.++.|+++|.+
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~------------~fnF----------------EtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGT------------SFNF----------------ETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCc------------eeeH----------------HHHhhhhcccceeEEEccCCCE
Confidence 36666777777777777777777711 1111 1235679999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEeccCC-CCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITALRSLLRGHT-QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~~~~l~~H~-~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
+++|..+|.|++|+..-..+..+..|. ..|++++| +++...|++|+.||+|+|||....+. -..
T Consensus 153 miSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlaf-SpnDskF~t~SdDg~ikiWdf~~~ke--------------e~v 217 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAF-SPNDSKFLTCSDDGTIKIWDFRMPKE--------------ERV 217 (464)
T ss_pred EEEcCCCceEEecccchhhhHHhhHhhhhhhheecc-CCCCceeEEecCCCeEEEEeccCCch--------------hhe
Confidence 999999999999999888777776665 89999999 78889999999999999999998762 234
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
+.+|...|.++.|||..+.+++++.++ ++.+|+.+.+.. +..+.+|+..|..+.|++++
T Consensus 218 L~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg~c-------------------l~tlh~HKntVl~~~f~~n~- 276 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSC-------------------LATLHGHKNTVLAVKFNPNG- 276 (464)
T ss_pred eccCCCCcceeccCCccceeEEccCCc-eeEeecCCCcch-------------------hhhhhhccceEEEEEEcCCC-
Confidence 478899999999999998666555555 666666665553 56777899999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
++|+|+|.|..+++||+|+.+.++++++|.. .|+++.|+ |-..-|+++|+.||.|..|.+...
T Consensus 277 N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~Wh----P~~~~lftsgg~Dgsvvh~~v~~~------------ 339 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWH----PLNESLFTSGGSDGSVVHWVVGLE------------ 339 (464)
T ss_pred CeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccc----cccccceeeccCCCceEEEecccc------------
Confidence 9999999999999999999999999999998 99999998 766666666669999999998744
Q ss_pred cEEEEEe-ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 470 KCTQTLE-LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 470 ~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+.+..+. .|...+ ..++|.|-|.+|++|+.|.++++|.-.
T Consensus 340 ~p~~~i~~AHd~~i---------wsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 340 EPLGEIPPAHDGEI---------WSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccCCCcccccce---------eeeeccccceeEeecCCCcceeeeccC
Confidence 3333332 333333 359999999999999999999999754
No 20
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.5e-27 Score=276.30 Aligned_cols=392 Identities=16% Similarity=0.184 Sum_probs=280.6
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~Las 233 (1395)
..++...||.|..||.|++|+..+ ...+.++.||...|+++.|+..|.+|++
T Consensus 73 ~~~d~l~lAVGYaDGsVqif~~~s----------------------------~~~~~tfngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 73 SSDDILLLAVGYADGSVQIFSLES----------------------------EEILITFNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred ccCCcceEEEEecCceEEeeccCC----------------------------CceeeeecccccceEEEEEcccCceEee
Confidence 344557789999999999999331 1345678899999999999999999999
Q ss_pred EEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|+.|+.|.|||+-.. -+..++||.+.|+.+-| ..+.++|+++|.|+.|++||+.+.. |+.+.-+
T Consensus 125 GskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F-~~~~~~lvS~sKDs~iK~WdL~tqh--------------Cf~Thvd 189 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF-LNGDSFLVSVSKDSMIKFWDLETQH--------------CFETHVD 189 (888)
T ss_pred cCCCccEEEEEeccceeeEEeecchHHHhHHhc-cCCCeEEEEeccCceEEEEecccce--------------eeeEEec
Confidence 999999999999776 47789999999999999 7778999999999999999999877 5666666
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC---------------------Cccc---------------------
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV---------------------GKGE--------------------- 350 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~---------------------~~~~--------------------- 350 (1395)
|...++.+++++ ..+++++.+..+.+|..... +++.
T Consensus 190 ~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~ 267 (888)
T KOG0306|consen 190 HRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKV 267 (888)
T ss_pred ccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhh
Confidence 777777777766 45666666666666655100 0000
Q ss_pred --------------------------cc---------------------------------cCCC--C---------Ccc
Q 039790 351 --------------------------RF---------------------------------SAEE--P---------LKC 360 (1395)
Q Consensus 351 --------------------------~~---------------------------------s~~~--~---------~~~ 360 (1395)
.. .... . ..|
T Consensus 268 ~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~ 347 (888)
T KOG0306|consen 268 IELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVE 347 (888)
T ss_pred hhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceE
Confidence 00 0000 0 000
Q ss_pred --Cccc---c-----ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe---------------
Q 039790 361 --PVDE---L-----INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL--------------- 415 (1395)
Q Consensus 361 --~~~~---~-----~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl--------------- 415 (1395)
.+.. . ......+.||...|.+++||.+. ..++||+ .+.|+||+..+.+|++++
T Consensus 348 ~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~ 425 (888)
T KOG0306|consen 348 WYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDR 425 (888)
T ss_pred EEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCc
Confidence 0000 0 00013467899999999999876 4555554 567999998877776654
Q ss_pred -------------------------cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 416 -------------------------RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 416 -------------------------~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
++|++ .|++++.+ ||+..++++| .|.+|++||...-.. ..+.
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg-aIWsi~~~----pD~~g~vT~s-aDktVkfWdf~l~~~-------~~gt 492 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVETIRAHDG-AIWSISLS----PDNKGFVTGS-ADKTVKFWDFKLVVS-------VPGT 492 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhhhhhcccc-ceeeeeec----CCCCceEEec-CCcEEEEEeEEEEec-------cCcc
Confidence 35777 89999998 9999999976 999999999854300 0011
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCc
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDA 550 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~ 550 (1395)
..+.+..+.......++.. .++.+||||.+|+.+--|++|+||-+++-+ -++.-|...-|+++++.+. |+
T Consensus 493 ~~k~lsl~~~rtLel~ddv--L~v~~Spdgk~LaVsLLdnTVkVyflDtlK-------FflsLYGHkLPV~smDIS~-DS 562 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDV--LCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-------FFLSLYGHKLPVLSMDISP-DS 562 (888)
T ss_pred cceeeeeccceEEeccccE--EEEEEcCCCcEEEEEeccCeEEEEEeccee-------eeeeecccccceeEEeccC-Cc
Confidence 1111333333322222222 258999999999999999999999998733 2667777778999999887 65
Q ss_pred C----cCCCCeEEEEEcCCCcee---eecccceEEecCCCCC--eecccCCCceEEEeecCCCCcceeeccCCCC
Q 039790 551 S----PDGEHIVQIYCVQTQAIQ---QYALDLSQCLPPPLEN--AELEKTDSNATRAFDVANPDGSASLESSHGT 616 (1395)
Q Consensus 551 ~----~s~dg~V~lWdv~t~~i~---~~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~tg~~~~~l~g~~~~ 616 (1395)
. .+.|..|+||-++-|... ..|-+...|+-|-++. +...+.| +.++-||....+++..|+|+|+.
T Consensus 563 klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD-~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 563 KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD-GKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCc-ceEEeechhhhhhheeeccchhe
Confidence 3 578999999999999442 1234556787776654 4444545 66669999999999999988884
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.4e-27 Score=268.75 Aligned_cols=274 Identities=20% Similarity=0.259 Sum_probs=232.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+...+..||+|+.||.+|+|+. .+..+.+|..|.+.|.++.|+.+|+||
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~-----------------------------~G~l~~tl~~HkgPI~slKWnk~G~yi 291 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNK-----------------------------DGNLISTLGQHKGPIFSLKWNKKGTYI 291 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEec-----------------------------CchhhhhhhccCCceEEEEEcCCCCEE
Confidence 677777889999999999999982 235667788899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||++.|||..++. ...|.-|..+-.+|.| .+...|++++.||.|+|+.+.... ....+
T Consensus 292 lS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW--~~~~~F~ts~td~~i~V~kv~~~~--------------P~~t~ 355 (524)
T KOG0273|consen 292 LSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW--QSNDEFATSSTDGCIHVCKVGEDR--------------PVKTF 355 (524)
T ss_pred EeccCCccEEEEeccCceEEEeeeeccCCccceEE--ecCceEeecCCCceEEEEEecCCC--------------cceee
Confidence 999999999999999985 5677778887789999 345679999999999999998765 44555
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC-
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT- 389 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~- 389 (1395)
.+|.+.|..+.|+|.+. +|++++++..+++|....... ...+.+|...|+.+.|+|+|+
T Consensus 356 ~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~-------------------~~~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 356 IGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSNS-------------------VHDLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred ecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCcc-------------------hhhhhhhccceeeEeecCCCCc
Confidence 66999999999999996 666666666666665433221 455778999999999999863
Q ss_pred -------cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 390 -------TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 390 -------~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
..|++++.|++|++||+..|.++++|..|.. +|++|+|+ |+|+|+++ |+.||.|.||++.++
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS----~~g~ylAs-Gs~dg~V~iws~~~~----- 484 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFS----PNGRYLAS-GSLDGCVHIWSTKTG----- 484 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEec----CCCcEEEe-cCCCCeeEeccccch-----
Confidence 5899999999999999999999999999997 99999999 99999999 559999999999998
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+.++.+.+.... ..++|+.+|.+|.++..|+.+++.|+.
T Consensus 485 -------~l~~s~~~~~~I----------fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 485 -------KLVKSYQGTGGI----------FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -------heeEeecCCCeE----------EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 888888765542 249999999999999999999999975
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-28 Score=268.13 Aligned_cols=292 Identities=21% Similarity=0.255 Sum_probs=240.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.....+.+|...|+.+-|.|+...+++++.|++|++||..++. ...++||++.|.+|+| ...|.+|++|+.|-.+++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~-~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISF-DASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEE-ecCccEEEecCCccchhhe
Confidence 3445677899999999999999999999999999999999985 7789999999999999 8889999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|..+-. .+++...+|+..+.+++|-|.|.+++.++.+..|..|+..... |
T Consensus 178 d~~~~~-------------~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~------------c----- 227 (406)
T KOG0295|consen 178 DFDTFF-------------RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY------------C----- 227 (406)
T ss_pred eHHHHH-------------HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce------------e-----
Confidence 998632 2456667888999999999999999999999999888764422 1
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC-C---------C
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-P---------Q 435 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~-p---------d 435 (1395)
+..+.+|..+|..+..+.|| .++++|+.|.+|++|-+.++.|...++.|.- +|-+++|.|... | +
T Consensus 228 ---v~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~ 302 (406)
T KOG0295|consen 228 ---VKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTN 302 (406)
T ss_pred ---EEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCC
Confidence 68899999999999999999 8999999999999999999999999999986 999999973221 1 1
Q ss_pred -CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 436 -HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 436 -g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
++++.+ |+.|++||+||+.++ .|+.++.+|...+.. ++|+|.|+||+++.+|+++++
T Consensus 303 ~~~~l~s-~SrDktIk~wdv~tg------------~cL~tL~ghdnwVr~---------~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 303 GGQVLGS-GSRDKTIKIWDVSTG------------MCLFTLVGHDNWVRG---------VAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred CccEEEe-ecccceEEEEeccCC------------eEEEEEecccceeee---------eEEcCCCeEEEEEecCCcEEE
Confidence 245655 669999999999999 999999999987754 999999999999999999999
Q ss_pred EEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEE
Q 039790 515 IHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYC 562 (1395)
Q Consensus 515 Wdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWd 562 (1395)
||+..+. +++.+..+..-...+.|.-.. ... ++-|..+++|.
T Consensus 361 wdl~~~~-----cmk~~~ah~hfvt~lDfh~~~-p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 361 WDLKNLQ-----CMKTLEAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEeccce-----eeeccCCCcceeEEEecCCCC-ceEEeccccceeeeee
Confidence 9998743 555554443333333333332 222 23467788884
No 23
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=3e-29 Score=271.31 Aligned_cols=237 Identities=16% Similarity=0.278 Sum_probs=198.5
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
....|+|+.+ |...+++|..|.+|+|||.++- +...+.||++.|.|+.| +...|++|+.|.+|+|||+.+|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge-- 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGE-- 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCCc--
Confidence 3467888776 5567999999999999999885 68899999999999999 67799999999999999999998
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
++.++-+|-..|..+.|+. ++++.++.+..+.+|+...... ..| .+++.
T Consensus 269 ------------~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~---------it~--------rrVLv 317 (499)
T KOG0281|consen 269 ------------PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD---------ITL--------RRVLV 317 (499)
T ss_pred ------------hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH---------HHH--------HHHHh
Confidence 4555667777777777753 4677777777777777644321 111 46678
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
||...|+.+.|+. ++++++|.|.+|++|++.++.+++++.||.. .|-|+.|. |+++++ ||.|.+|+|||
T Consensus 318 GHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkR-GIAClQYr------~rlvVS-GSSDntIRlwd 386 (499)
T KOG0281|consen 318 GHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR------DRLVVS-GSSDNTIRLWD 386 (499)
T ss_pred hhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccc-cceehhcc------CeEEEe-cCCCceEEEEe
Confidence 9999999999964 7999999999999999999999999999997 89999985 666666 66999999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
+..| .|++.+++|...+.+ +.| |...|++|+.||+|++||+..+..+
T Consensus 387 i~~G------------~cLRvLeGHEeLvRc---------iRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 387 IECG------------ACLRVLEGHEELVRC---------IRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred cccc------------HHHHHHhchHHhhhh---------eee--cCceeeeccccceEEEEecccccCC
Confidence 9999 999999999987654 555 5788999999999999999987543
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=9.3e-27 Score=255.55 Aligned_cols=337 Identities=15% Similarity=0.153 Sum_probs=261.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+.+|..|.+.|.+++++|+.+++|+|+.|..-.||++.++. ...+.+|++.|+++.| +.+|.+||||+.+|.|+||
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F-shdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF-SHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE-ccCceEEEecCCCccEEEE
Confidence 4567899999999999999999999999999999999999985 7789999999999999 9999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
+..++... ..+. ..-..+.-++|||.+..+++++.++.+..|.....+
T Consensus 134 ~~stg~~~-------------~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~------------------ 181 (399)
T KOG0296|consen 134 KVSTGGEQ-------------WKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA------------------ 181 (399)
T ss_pred EcccCceE-------------EEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcc------------------
Confidence 99998721 1111 233455678999988777777777777777654321
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
..+++.||...+++=.|.|+| ++++++..||+|++||..+|.+++.+.+..+....++.++ ..+..++. |+.
T Consensus 182 --~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~----~~~~~~~~-g~~ 253 (399)
T KOG0296|consen 182 --LCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN----LAGSTLTK-GNS 253 (399)
T ss_pred --eeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc----cccceeEe-ccC
Confidence 168889999999999999998 8999999999999999999999999986655578899997 66766666 559
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc--cccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL--EDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~--~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
++.+++-+..++ +.+..+.+........ +..--+..+.++..=.+.++|+.||+|.|||+..-
T Consensus 254 e~~~~~~~~~sg------------KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--- 318 (399)
T KOG0296|consen 254 EGVACGVNNGSG------------KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--- 318 (399)
T ss_pred CccEEEEccccc------------eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc---
Confidence 999999998888 6666665311100000 00011224556666778899999999999999763
Q ss_pred CCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCcee-ee--cccceEEecCCCCC-eecccCCCceEEEe
Q 039790 524 ASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQ-QY--ALDLSQCLPPPLEN-AELEKTDSNATRAF 599 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~-~~--~~~~~~cl~~s~d~-l~~~~sd~~v~~iW 599 (1395)
.++.+.++......+.|.++.+-..+..+|.|+.||..+|.+. .| |.....|++.+++. +.+..+|+++.++|
T Consensus 319 ---~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 319 ---TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred ---hhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 4556666666666666666431112467999999999999763 34 44557898888865 77788888999999
Q ss_pred ecC
Q 039790 600 DVA 602 (1395)
Q Consensus 600 D~~ 602 (1395)
++.
T Consensus 396 ~v~ 398 (399)
T KOG0296|consen 396 EVP 398 (399)
T ss_pred ecC
Confidence 874
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=8.1e-27 Score=274.31 Aligned_cols=305 Identities=19% Similarity=0.237 Sum_probs=234.4
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCee----eeCceEEEEEeccCCCccCc-------------ccccceeeeeCCCCCEEE
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHL----IGNHSVYDIDVRLDGEVQPQ-------------LEVTPITKYISDPGLVLG 221 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L----~G~~~v~~v~~~~~G~~~~~-------------~~~~~i~~l~~h~~~V~~ 221 (1395)
..|+++-..|...++. -|+-.++ .++..|-.+.+...|..++- ....-+.+..+|...+.|
T Consensus 278 ~~lvvgFssG~f~Lye--lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~ 355 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYE--LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITS 355 (893)
T ss_pred eEEEEEecCCeeEEEe--cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceee
Confidence 7888888899888887 3343333 34455555555544444330 112455677899999999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
++++|||.+||+|+.||.|+|||...| |..+|..|+..|+.+.| ...|+.+++.+.||+||.||+....
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f-~~~g~~llssSLDGtVRAwDlkRYr--------- 425 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF-TARGNVLLSSSLDGTVRAWDLKRYR--------- 425 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE-EecCCEEEEeecCCeEEeeeecccc---------
Confidence 999999999999999999999999998 89999999999999999 8999999999999999999999877
Q ss_pred cceEEEEEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe
Q 039790 301 GKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI 379 (1395)
Q Consensus 301 ~~~i~~l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V 379 (1395)
.++++.. ......|++..|.|..+++++.+.--+.+|....|+. +..+.||.++|
T Consensus 426 -----NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-------------------lDiLsGHEgPV 481 (893)
T KOG0291|consen 426 -----NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-------------------LDILSGHEGPV 481 (893)
T ss_pred -----eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-------------------eehhcCCCCcc
Confidence 3333333 2234457888898987777777777777777666653 56788999999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 380 TELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
.+++|+|++ ..|++||+|++||+||+-.. ..+.++.... .+..|+|. |||+.|+++. .||.|.+||...+
T Consensus 482 s~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s--dvl~vsfr----PdG~elaVaT-ldgqItf~d~~~~- 552 (893)
T KOG0291|consen 482 SGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTVETLEIRS--DVLAVSFR----PDGKELAVAT-LDGQITFFDIKEA- 552 (893)
T ss_pred eeeEEcccc-CeEEeccccceEEEEEeeccCceeeeEeecc--ceeEEEEc----CCCCeEEEEE-ecceEEEEEhhhc-
Confidence 999999999 89999999999999998654 3455665443 69999999 9999999987 9999999999876
Q ss_pred CCCCCCCcccccEEEEEeccCc---------cccc---ccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSS---------AELR---LEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~---------~i~~---~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
..+.++++... .+.. ....+| ..++++.||.+|++|+..+.|++||+..+
T Consensus 553 -----------~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F-tti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 553 -----------VQVGSIDGRKDLSGGRKETDRITAENSAKGKTF-TTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred -----------eeeccccchhhccccccccceeehhhcccCCce-EEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 22222221111 0000 011222 36999999999999999999999999874
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-26 Score=244.73 Aligned_cols=279 Identities=19% Similarity=0.258 Sum_probs=220.6
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL 237 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D 237 (1395)
+..|+++|.|+.||+|+...++ -|.+..- .-.+|...|..++|+|.|+|||+|+.|
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~---------s~~ck~v---------------ld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGD---------SWTCKTV---------------LDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ceEEEeecCCceEEEEecCCCC---------cEEEEEe---------------ccccchheeeeeeecCCCcEEEEeecc
Confidence 4589999999999999944211 1222111 113699999999999999999999999
Q ss_pred CeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
+++.||.-..+ ++..+.||...|.+++| +.+|++||+|+.|+.|-||.+..+. -..++.++..|.
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaw-s~sG~~LATCSRDKSVWiWe~dedd-----------Efec~aVL~~Ht 150 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAW-SASGNYLATCSRDKSVWIWEIDEDD-----------EFECIAVLQEHT 150 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEE-cCCCCEEEEeeCCCeEEEEEecCCC-----------cEEEEeeecccc
Confidence 99999998876 67899999999999999 9999999999999999999999655 345788889999
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
..|..+.|||....|+.++.++.|..|+... ++.+.| +..+.+|...|++++|++.| .+|++
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~---------dddW~c--------~~tl~g~~~TVW~~~F~~~G-~rl~s 212 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDED---------DDDWEC--------VQTLDGHENTVWSLAFDNIG-SRLVS 212 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecC---------CCCeeE--------EEEecCccceEEEEEecCCC-ceEEE
Confidence 9999999999999888888899998887642 223344 78899999999999999998 89999
Q ss_pred EeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEE
Q 039790 395 ASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQ 473 (1395)
Q Consensus 395 gs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~ 473 (1395)
++.|++|+||-..+. +. -|++ .++.|.|. ...|+++| .|+.|+||.-... .+...++.+.
T Consensus 213 ~sdD~tv~Iw~~~~~-----~~~~~sr-~~Y~v~W~------~~~IaS~g-gD~~i~lf~~s~~------~d~p~~~l~~ 273 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTD-----LSGMHSR-ALYDVPWD------NGVIASGG-GDDAIRLFKESDS------PDEPSWNLLA 273 (312)
T ss_pred ecCCcceEeeeeccC-----cchhccc-ceEeeeec------ccceEecc-CCCEEEEEEecCC------CCCchHHHHH
Confidence 999999999986532 22 3555 89999994 45778877 9999999976543 1123334433
Q ss_pred EEe-ccCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEcC
Q 039790 474 TLE-LKSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 474 tl~-~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~ 518 (1395)
... .|...+ .++.|.|. ..+|++|++||.|++|.+.
T Consensus 274 ~~~~aHe~dV---------NsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 274 KKEGAHEVDV---------NSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhhccccccc---------ceEEEcCCCCCceeecCCCceEEEEEec
Confidence 222 233222 25888884 7899999999999999874
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=7.7e-29 Score=268.21 Aligned_cols=300 Identities=18% Similarity=0.247 Sum_probs=229.0
Q ss_pred CCchhhHhhhccCCCCCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceee
Q 039790 132 SGNNLLMAFFANQHQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITK 211 (1395)
Q Consensus 132 ~~g~~l~~ll~~~~~~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~ 211 (1395)
.-|..++..++.+.-..-.+...--+...+++|..|++|++||.. ...+++.
T Consensus 181 r~Gr~~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n----------------------------~~~c~~~ 232 (499)
T KOG0281|consen 181 RCGRHLLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKN----------------------------SLECLKI 232 (499)
T ss_pred hccceeeeeecCCcccCCceEEEEecchhhhcccccCceEEeccc----------------------------cHHHHHh
Confidence 344444444443322222223333344788999999999999933 1245678
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
+.||.+.|.|+.| +.+.|++|+.|.+|+|||+++| ++.++.+|.+.|..+.| +..++++|+.|.+|.|||+...
T Consensus 233 L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf---~ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 233 LTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF---SNGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred hhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE---eCCEEEEecCCceeEEEeccCc
Confidence 8999999999887 4569999999999999999998 47889999999999999 4679999999999999999876
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
.. +.+..+..+|...|+.+.|+.. ++++++++..++.|....... ++
T Consensus 308 s~-----------it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTikvW~~st~ef-------------------vR 354 (499)
T KOG0281|consen 308 TD-----------ITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWSTSTCEF-------------------VR 354 (499)
T ss_pred hH-----------HHHHHHHhhhhhheeeeccccc---eEEEecCCceEEEEeccceee-------------------eh
Confidence 51 2233455678888888888653 555566555555555444332 67
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
++.+|...|-|+.+. | +++++||.|.+||+||+..|.|++.+.||.. -|.++.|. .+.+++|+ .||+|+
T Consensus 355 tl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvRciRFd------~krIVSGa-YDGkik 423 (499)
T KOG0281|consen 355 TLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFD------NKRIVSGA-YDGKIK 423 (499)
T ss_pred hhhcccccceehhcc--C-eEEEecCCCceEEEEeccccHHHHHHhchHH-hhhheeec------Cceeeecc-ccceEE
Confidence 888999999999875 4 8999999999999999999999999999997 99999994 67888877 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
|||+..+..-. .....-|+.++.-|++.+ ..+.-|...|++++.|.+|.|||+..+..
T Consensus 424 vWdl~aaldpr---a~~~~~Cl~~lv~hsgRV-----------FrLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 424 VWDLQAALDPR---APASTLCLRTLVEHSGRV-----------FRLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEecccccCCc---ccccchHHHhhhhcccee-----------EEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 99998873211 112235777777777664 33445778999999999999999987654
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=8.9e-27 Score=243.71 Aligned_cols=259 Identities=17% Similarity=0.228 Sum_probs=216.4
Q ss_pred CCCEEEEeCcCCCCCee--eeCc--eEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEE
Q 039790 167 APPVRLRSSKVPKGRHL--IGNH--SVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRI 242 (1395)
Q Consensus 167 Dg~Vrlwd~~sp~Gr~L--~G~~--~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrI 242 (1395)
|+.|.-.. ..|+++.| +|.. ++||+....+ .++.+|.+|.+.|+.|.|..||+++++|+.||+++|
T Consensus 40 dsqVNrLe-iTpdk~~LAaa~~qhvRlyD~~S~np---------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kI 109 (311)
T KOG0315|consen 40 DSQVNRLE-ITPDKKDLAAAGNQHVRLYDLNSNNP---------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKI 109 (311)
T ss_pred ccceeeEE-EcCCcchhhhccCCeeEEEEccCCCC---------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEE
Confidence 66676666 56788877 4433 5566655432 589999999999999999999999999999999999
Q ss_pred EECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEE
Q 039790 243 LNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCW 322 (1395)
Q Consensus 243 Wd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~ 322 (1395)
||++.-.......|..+|+++.. .++...|++|..+|.|+|||+.+..+.+ .+....+..+.++..
T Consensus 110 WdlR~~~~qR~~~~~spVn~vvl-hpnQteLis~dqsg~irvWDl~~~~c~~-------------~liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHNSPVNTVVL-HPNQTELISGDQSGNIRVWDLGENSCTH-------------ELIPEDDTSIQSLTV 175 (311)
T ss_pred EeccCcccchhccCCCCcceEEe-cCCcceEEeecCCCcEEEEEccCCcccc-------------ccCCCCCcceeeEEE
Confidence 99998666666678899999999 7888889999999999999999876322 334455567889999
Q ss_pred eCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 039790 323 HPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVK 402 (1395)
Q Consensus 323 sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~Ir 402 (1395)
.++|..++++...|..++|+...... ...+.++..+..|.+.+..+.||||+ ++||++|.|.+++
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~~~~--------------~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~ 240 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLNHQT--------------ASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVK 240 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccCCCc--------------cccceEhhheecccceEEEEEECCCC-cEEEeecCCceEE
Confidence 99999888888888999998755211 12334466788999999999999998 8999999999999
Q ss_pred EEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 403 IWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 403 IWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
||++.+. +.-..+++|.. +++.++|| .||+||++++ .|+++++||+..+ +.++.+.+|...
T Consensus 241 iwn~~~~~kle~~l~gh~r-WvWdc~FS----~dg~YlvTas-sd~~~rlW~~~~~------------k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQR-WVWDCAFS----ADGEYLVTAS-SDHTARLWDLSAG------------KEVRQYQGHHKA 302 (311)
T ss_pred EEecCCceeeEEEeecCCc-eEEeeeec----cCccEEEecC-CCCceeecccccC------------ceeeecCCcccc
Confidence 9999887 66678899997 99999999 9999999977 8999999999998 888999998865
Q ss_pred c
Q 039790 482 E 482 (1395)
Q Consensus 482 i 482 (1395)
.
T Consensus 303 ~ 303 (311)
T KOG0315|consen 303 A 303 (311)
T ss_pred c
Confidence 4
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=9.3e-27 Score=249.91 Aligned_cols=259 Identities=14% Similarity=0.186 Sum_probs=218.6
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
..++..+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++...+ ...+++|++.|..+.| ..|++.|++||.|.+|+
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~-~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHG-MRDGSHILSCGTDKTVR 115 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeee-ccCCCEEEEecCCceEE
Confidence 35677788999999999999999999999999999999988764 5688899999999999 99999999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
.||+++|+ +++....|...+..++-+.-|..++.++.+++.+++|+.+....
T Consensus 116 ~wD~~tG~--------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-------------- 167 (338)
T KOG0265|consen 116 GWDAETGK--------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-------------- 167 (338)
T ss_pred EEecccce--------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch--------------
Confidence 99999998 45556677788888887777888999998887777766543221
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
++++. ....++++.|...+ ..+.+|+-|+.|++||++....++++.||.+ .|+.+..+ ++|.++++-+
T Consensus 168 -----~~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls----~~gs~llsns 235 (338)
T KOG0265|consen 168 -----IKTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLS----RYGSFLLSNS 235 (338)
T ss_pred -----hhccc-cceeEEEEEecccc-cceeeccccCceeeeccccCcceEEeecccC-ceeeEEec----cCCCcccccc
Confidence 22232 45679999999888 7999999999999999999999999999998 99999999 9999999966
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.|.+|++||++-. ....+|+..|.+|...... . .-.++|+|++..+.+|+.|..+|+||..+
T Consensus 236 -Md~tvrvwd~rp~--------~p~~R~v~if~g~~hnfek---n--lL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 236 -MDNTVRVWDVRPF--------APSQRCVKIFQGHIHNFEK---N--LLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred -ccceEEEEEeccc--------CCCCceEEEeecchhhhhh---h--cceeeccCCCCccccccccceEEEeeccc
Confidence 9999999999754 1334789999887654211 1 12488999999999999999999999765
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=2.9e-27 Score=257.65 Aligned_cols=251 Identities=18% Similarity=0.233 Sum_probs=216.3
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
+.-+.+.+|.++|.|+++.|...+|++|+.|++|+|||+.+|. ..++.||-..|..++| +....||.+|+.|+.|+.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vav-S~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAV-SKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeee-cccCceEEEecCCCeeEEE
Confidence 4456778999999999999999999999999999999999995 6689999999999999 8888899999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+...+ .++-+.+|-..|+++..+|.-..++.+|.+..+.+||.+...
T Consensus 221 DLe~nk--------------vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~------------------ 268 (460)
T KOG0285|consen 221 DLEYNK--------------VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA------------------ 268 (460)
T ss_pred echhhh--------------hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc------------------
Confidence 999887 455667888999999999999877777777777777765432
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.+..+.||...|.++.+.|-+ -.+++||.|++||+||++.|+-..++..|+. .|.+++.. |....+++++ .
T Consensus 269 --~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lh----P~e~~fASas-~ 339 (460)
T KOG0285|consen 269 --SVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLH----PKENLFASAS-P 339 (460)
T ss_pred --eEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecC----CchhhhhccC-C
Confidence 278899999999999999987 5899999999999999999999999999987 99999997 8887788755 4
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
..|+-|++..+ ..++.+.+|...+.. +....|| ++++|+++|.|.+||...|.+
T Consensus 340 -dnik~w~~p~g------------~f~~nlsgh~~iint---------l~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 340 -DNIKQWKLPEG------------EFLQNLSGHNAIINT---------LSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred -ccceeccCCcc------------chhhccccccceeee---------eeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 46999999888 777778888766543 6666665 567899999999999999764
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=284.05 Aligned_cols=249 Identities=24% Similarity=0.361 Sum_probs=211.5
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
|...|.|+.|+++|++|++++.|+.|++|+..++. ...+.+|...|.+++| ++++.++++|+.|++|+|||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~f-s~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAF-SPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEE-CCCCcEEEEecCCceEEEeeccCCC
Confidence 47889999999999999999999999999996654 5667899999999999 9999999999999999999994432
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.+++++.+|...+++++|+|+++ ++++|+++..+++|+.+.+.. ...
T Consensus 237 -------------~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~-------------------~~~ 283 (456)
T KOG0266|consen 237 -------------RNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGEC-------------------VRK 283 (456)
T ss_pred -------------eEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeE-------------------EEe
Confidence 26788889999999999999995 555555555444444443332 678
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCCCCC-CeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPYDGH-PVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~~~-~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
+.+|.+.|++++|+++| ++|++++.||.|+|||+.++. ++..+.++... .++++.|+ |++.+|++++ .|+.
T Consensus 284 l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs----p~~~~ll~~~-~d~~ 357 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS----PNGKYLLSAS-LDRT 357 (456)
T ss_pred eeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC----CCCcEEEEec-CCCe
Confidence 89999999999999999 899999999999999999999 78899988874 59999999 9999999977 9999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+++||+..+ .++..+.+|.....+ ++ ...++++|.++++|+.|+.|++|++..+.
T Consensus 358 ~~~w~l~~~------------~~~~~~~~~~~~~~~----~~--~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 358 LKLWDLRSG------------KSVGTYTGHSNLVRC----IF--SPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred EEEEEccCC------------cceeeecccCCccee----Ee--cccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 999999988 999999998865211 22 24447899999999999999999998743
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=241.06 Aligned_cols=253 Identities=17% Similarity=0.242 Sum_probs=220.2
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.+....+.+|.+.|..+.|+.||+|.++++.|.+||+|+...| +++++.+|...|.+++. +.|...|++|+.|+.|.+
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~-s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAAL-SSDNSKFASCGGDKAVQV 85 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccc-cccccccccCCCCceEEE
Confidence 3456678899999999999999999999999999999999887 68899999999999999 888999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||+.+|+ .++.+.+|...|+.+.|+.....++.++.+..+..||-+..
T Consensus 86 wDV~TGk--------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~------------------ 133 (307)
T KOG0316|consen 86 WDVNTGK--------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR------------------ 133 (307)
T ss_pred EEcccCe--------------eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC------------------
Confidence 9999998 66778899999999999998876666677777777765432
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
..++++++....+.|.++.... ..|++||.||++|.||+|.|.....+-+| +|++++|+ +|++.+++++
T Consensus 134 s~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s----~d~nc~La~~- 202 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFS----KDGNCSLASS- 202 (307)
T ss_pred CCCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEec----CCCCEEEEee-
Confidence 1234777887888999999864 68999999999999999999887777666 89999999 9999998865
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.|++|++.|-.+| +.++.+++|....+.. .+++.....++++|+.||.||+||+..+.
T Consensus 203 l~stlrLlDk~tG------------klL~sYkGhkn~eykl-------dc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 203 LDSTLRLLDKETG------------KLLKSYKGHKNMEYKL-------DCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ccceeeecccchh------------HHHHHhcccccceeee-------eeeecccceeEEeccCCceEEEEEeccce
Confidence 9999999999998 9999999998776542 36777888899999999999999998643
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.9e-27 Score=271.62 Aligned_cols=251 Identities=20% Similarity=0.273 Sum_probs=220.2
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+++..|...|.++.|+|...++.++..+|.|.|||.++. .+..|.-..-+|.+..| -...+++++|+.|..||||+..
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kf-iaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKF-IARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhhee-eeccceEEEecCCceEEEEecc
Confidence 455668899999999999999999999999999999997 46777777889999999 7778999999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+++ .+..+..|.+.+.+++.||..++++.++.+-.|..| +. ++.+.|
T Consensus 86 t~e--------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW-~w----------e~~wa~-------- 132 (794)
T KOG0276|consen 86 TGE--------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLW-DW----------ENEWAC-------- 132 (794)
T ss_pred cce--------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEe-ec----------cCceee--------
Confidence 987 677888999999999999999877665555444444 32 223334
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
.++|.||...|.+++|.|.+.+.||++|.|++||||.+.+..+..+++||.. .|+||+|-+. +|..+|++++ +|.+
T Consensus 133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~--gdkpylIsga-DD~t 208 (794)
T KOG0276|consen 133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTG--GDKPYLISGA-DDLT 208 (794)
T ss_pred eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccC--CCcceEEecC-CCce
Confidence 7899999999999999999989999999999999999999999999999997 9999999833 5667999966 9999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|+|||..+. .|++++++|...+. .++|.|.=.+|++|+.||+|+||+-.+
T Consensus 209 iKvWDyQtk------------~CV~TLeGHt~Nvs---------~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 209 IKVWDYQTK------------SCVQTLEGHTNNVS---------FVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred EEEeecchH------------HHHHHhhcccccce---------EEEecCCCcEEEEecCCccEEEecCcc
Confidence 999999998 99999999998764 489999999999999999999999765
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.5e-25 Score=235.89 Aligned_cols=249 Identities=17% Similarity=0.224 Sum_probs=207.1
Q ss_pred cceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC----ceEEe-ccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 207 TPITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA----LRSLL-RGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~----~~~~l-~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
..++.+.+|.+.|..++|+|- |..||+|+.|..||||+...+ ++..+ .+|+..|.+++| +|.|++|++|+.|+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw-sp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW-SPHGRYLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee-cCCCcEEEEeeccc
Confidence 456788899999999999998 999999999999999999853 33333 479999999999 99999999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
++.||.-..+. ..++.++.+|+..|.+++|+.+|.+|..++.++.+.+|..... +.+.|
T Consensus 84 t~~Iw~k~~~e------------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded---------dEfec 142 (312)
T KOG0645|consen 84 TVVIWKKEDGE------------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED---------DEFEC 142 (312)
T ss_pred eEEEeecCCCc------------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC---------CcEEE
Confidence 99999987665 3468889999999999999999998888888888888876422 22233
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC---CCceeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR---KSTPLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~---sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
..++..|...|..+.|+|.. .+|+++|+|.+||+|+-. ...|+.+|.+|.+ .|.+++|. +.|.
T Consensus 143 --------~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~----~~G~ 208 (312)
T KOG0645|consen 143 --------IAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFD----NIGS 208 (312)
T ss_pred --------EeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEec----CCCc
Confidence 78899999999999999986 799999999999999866 3589999999998 99999998 9999
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe-ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE-LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.|+++. .|++|+||-..+. +. .|...++ .+.|. ...|++++.|+.|++|.
T Consensus 209 rl~s~s-dD~tv~Iw~~~~~-----------------~~~~~sr~~Y---------~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 209 RLVSCS-DDGTVSIWRLYTD-----------------LSGMHSRALY---------DVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred eEEEec-CCcceEeeeeccC-----------------cchhcccceE---------eeeec--ccceEeccCCCEEEEEE
Confidence 999965 9999999986543 22 2222222 25554 56789999999999998
Q ss_pred cCCC
Q 039790 517 MDYG 520 (1395)
Q Consensus 517 l~~g 520 (1395)
-..+
T Consensus 260 ~s~~ 263 (312)
T KOG0645|consen 260 ESDS 263 (312)
T ss_pred ecCC
Confidence 7653
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=2.2e-25 Score=252.26 Aligned_cols=249 Identities=24% Similarity=0.343 Sum_probs=207.8
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
+..+.+|.+.|.++.|++++++|++|+.||.|++|++.++ ....+..|...+..+.| .+++++|++++.||.|++||+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA-SADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEE-CCCCCEEEEEcCCCeEEEEEc
Confidence 3467789999999999999999999999999999999887 46778889999999999 788899999999999999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
..++ .+..+..+...+.++.|++++..+++++.++.+.+|+.....
T Consensus 81 ~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------- 126 (289)
T cd00200 81 ETGE--------------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-------------------- 126 (289)
T ss_pred Cccc--------------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE--------------------
Confidence 9765 233344566788999999996544444447778877764211
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
....+..|...|.+++|++++ .++++++.||.|++||++.++++..+..|.+ .|.++.|+ +++..+++++ .|+
T Consensus 127 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~----~~~~~l~~~~-~~~ 199 (289)
T cd00200 127 CLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFS----PDGEKLLSSS-SDG 199 (289)
T ss_pred EEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEEC----CCcCEEEEec-CCC
Confidence 144556789999999999987 7888888899999999999999999999987 89999999 9998998877 799
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.|++||+..+ +.+..+..|...+. .+.|++++.++++++.|+.|++|++..+
T Consensus 200 ~i~i~d~~~~------------~~~~~~~~~~~~i~---------~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 200 TIKLWDLSTG------------KCLGTLRGHENGVN---------SVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred cEEEEECCCC------------ceecchhhcCCceE---------EEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 9999999887 77777766654432 4889999999999988999999999764
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-25 Score=267.57 Aligned_cols=324 Identities=17% Similarity=0.253 Sum_probs=252.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+++.|..+.++++=..|.|++||.. -++++.+|..|.+.|.+++|++.+.++
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYR----------------------------M~tli~rFdeHdGpVRgv~FH~~qplF 66 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYR----------------------------MGTLIDRFDEHDGPVRGVDFHPTQPLF 66 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhh----------------------------hhhHHhhhhccCCccceeeecCCCCeE
Confidence 3445555899999999999999922 126778899999999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.|-.|+||+..+. ++.++.||-+.|..+.| ++.-.+|+|+|.|.||+||+..+++ ++.+.
T Consensus 67 VSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~F-HheyPWIlSASDDQTIrIWNwqsr~--------------~iavl 131 (1202)
T KOG0292|consen 67 VSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFF-HHEYPWILSASDDQTIRIWNWQSRK--------------CIAVL 131 (1202)
T ss_pred EecCCccEEEEEecccceehhhhccccceeEEeec-cCCCceEEEccCCCeEEEEeccCCc--------------eEEEE
Confidence 99999999999999986 78899999999999999 6778899999999999999999998 78888
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcccccc--CCCCCc-----cCccccccc--eEEEcccCCCeEE
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFS--AEEPLK-----CPVDELING--VQLVGKHDGEITE 381 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s--~~~~~~-----~~~~~~~~~--~~~l~~h~~~V~s 381 (1395)
.+|...|.|..|||....+++++-+.++.+||.....+...-. .+...+ ..+....+. ..++.||+..|+-
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 9999999999999998877777778888888876554321100 010000 001100011 4678899999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEG 459 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~ 459 (1395)
++|+|.- -+|+||+.|+.|++|.....+ .+-+.+||.+ .|.++.|. |....+++.| .|++|+|||+...
T Consensus 212 aAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfh----p~q~lIlSns-EDksirVwDm~kR-- 282 (1202)
T KOG0292|consen 212 AAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFH----PHQDLILSNS-EDKSIRVWDMTKR-- 282 (1202)
T ss_pred EEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEec----CccceeEecC-CCccEEEEecccc--
Confidence 9999987 699999999999999876543 4567889998 99999997 8889999977 9999999999888
Q ss_pred CCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeecccc
Q 039790 460 WLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMP 539 (1395)
Q Consensus 460 ~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ 539 (1395)
+++++|+-..+ .|| +++..|..+++++|- |+.+.+|.++... |
T Consensus 283 ----------t~v~tfrrend-------RFW--~laahP~lNLfAAgH-DsGm~VFkleREr-----------------p 325 (1202)
T KOG0292|consen 283 ----------TSVQTFRREND-------RFW--ILAAHPELNLFAAGH-DSGMIVFKLERER-----------------P 325 (1202)
T ss_pred ----------cceeeeeccCC-------eEE--EEEecCCcceeeeec-CCceEEEEEcccC-----------------c
Confidence 89999975443 344 488889999887664 6667788886522 2
Q ss_pred EEEEecCCCCcCcCCCCeEEEEEcCCC
Q 039790 540 ILSLTGTTTDASPDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 540 ils~~~~~~d~~~s~dg~V~lWdv~t~ 566 (1395)
.+.+.+.. -.. -.|..|+-||+.+.
T Consensus 326 a~~v~~n~-LfY-vkd~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 326 AYAVNGNG-LFY-VKDRFIRSYDLRTQ 350 (1202)
T ss_pred eEEEcCCE-EEE-EccceEEeeecccc
Confidence 22222222 111 12567888888884
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=3e-27 Score=262.05 Aligned_cols=278 Identities=16% Similarity=0.156 Sum_probs=218.0
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
...|..|.|.|+|+.|++|+..|.+.+|+..+- -...+..|...|.++.| +.++.+++||+.+|.|++|+.....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~w-s~~g~wmiSgD~gG~iKyWqpnmnn--- 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKW-SHNGTWMISGDKGGMIKYWQPNMNN--- 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEE-ccCCCEEEEcCCCceEEecccchhh---
Confidence 357889999999999999999999999998553 34567889999999999 9999999999999999999988654
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
...+..+|...|++++|+|.+..++.++.++.|.+||...... ..++.|
T Consensus 172 -----------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke--------------------e~vL~G 220 (464)
T KOG0284|consen 172 -----------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE--------------------ERVLRG 220 (464)
T ss_pred -----------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch--------------------hheecc
Confidence 1223345668899999999776666555555555555533221 356689
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
|...|.+++|+|.- .+|++||.|..|++||.++|.|+.++.+|+. .|..+.|. +++.+|++++ .|..++++|+
T Consensus 221 HgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~----~n~N~Llt~s-kD~~~kv~Di 293 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFN----PNGNWLLTGS-KDQSCKVFDI 293 (464)
T ss_pred CCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEc----CCCCeeEEcc-CCceEEEEeh
Confidence 99999999999987 7999999999999999999999999999997 99999999 9999999976 9999999999
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeee
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAE 533 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~ 533 (1395)
++- +.++++++|...+.+ +.|+| .-.+|.+|+.||.|+.|.+...+... .-+
T Consensus 294 R~m------------kEl~~~r~Hkkdv~~---------~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~------~i~ 346 (464)
T KOG0284|consen 294 RTM------------KELFTYRGHKKDVTS---------LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG------EIP 346 (464)
T ss_pred hHh------------HHHHHhhcchhhhee---------eccccccccceeeccCCCceEEEecccccccc------CCC
Confidence 977 778889999876644 55555 56789999999999999987322110 111
Q ss_pred eeccccEEEEecCCCCcC---cCCCCeEEEEE
Q 039790 534 FTVTMPILSLTGTTTDAS---PDGEHIVQIYC 562 (1395)
Q Consensus 534 f~~~~~ils~~~~~~d~~---~s~dg~V~lWd 562 (1395)
+.....++++.-..+..+ ++.|.++++|.
T Consensus 347 ~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 347 PAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cccccceeeeeccccceeEeecCCCcceeeec
Confidence 222234555554432221 35677888885
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=8.8e-26 Score=277.38 Aligned_cols=282 Identities=20% Similarity=0.274 Sum_probs=223.8
Q ss_pred CCCEEEEeCcCCCCCee-ee--Cc--eEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEE
Q 039790 167 APPVRLRSSKVPKGRHL-IG--NH--SVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIR 241 (1395)
Q Consensus 167 Dg~Vrlwd~~sp~Gr~L-~G--~~--~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~Ir 241 (1395)
...|..++ ++++|+.+ .+ +. .+|..... .. ..+..+.+|...|.+++|+++|++|++|+.|++|+
T Consensus 159 ~~sv~~~~-fs~~g~~l~~~~~~~~i~~~~~~~~---~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 159 CPSVTCVD-FSPDGRALAAASSDGLIRIWKLEGI---KS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred cCceEEEE-EcCCCCeEEEccCCCcEEEeecccc---cc------hhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 45566666 67777777 21 22 23333111 10 24556689999999999999999999999999999
Q ss_pred EEECC-CC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccE
Q 039790 242 ILNII-TA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPR 319 (1395)
Q Consensus 242 IWd~~-~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~ 319 (1395)
|||+. .+ .++++.+|...|++++| +++++++++|+.|++|+|||+++++ ++..+..|...+..
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f-~p~g~~i~Sgs~D~tvriWd~~~~~--------------~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAF-SPDGNLLVSGSDDGTVRIWDVRTGE--------------CVRKLKGHSDGISG 293 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEe-cCCCCEEEEecCCCcEEEEeccCCe--------------EEEeeeccCCceEE
Confidence 99994 43 67899999999999999 8888999999999999999999987 67888899999999
Q ss_pred EEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC--eEEEEEecCCCcEEEEEeC
Q 039790 320 VCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE--ITELSMCQWLTTRLASASL 397 (1395)
Q Consensus 320 v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~--V~slafspdg~~~LaSgs~ 397 (1395)
++|++++..+++++.++.+.+||....... .+..+.++... ++++.|+|++ .+|++++.
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~------------------~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~ 354 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL------------------CLKLLSGAENSAPVTSVQFSPNG-KYLLSASL 354 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee------------------eeecccCCCCCCceeEEEECCCC-cEEEEecC
Confidence 999999998888866666666665432210 02344455544 9999999998 89999999
Q ss_pred CCcEEEEeCCCCceeEEecCCCCC--CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEE
Q 039790 398 DGTVKIWDDRKSTPLAVLRPYDGH--PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL 475 (1395)
Q Consensus 398 Dg~IrIWDl~sg~~l~tl~~h~~~--~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl 475 (1395)
|+.+++||++.+.++..+.+|... .+.+..++ +.+.++++++ .|+.|++||+.++ ..++.+
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~sg~-~d~~v~~~~~~s~------------~~~~~l 417 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS----TGGKLIYSGS-EDGSVYVWDSSSG------------GILQRL 417 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCcceeEeccccc----CCCCeEEEEe-CCceEEEEeCCcc------------chhhhh
Confidence 999999999999999999999873 23333334 7899999865 9999999999988 788888
Q ss_pred ecc-CcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcC
Q 039790 476 ELK-SSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMD 518 (1395)
Q Consensus 476 ~~h-~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~ 518 (1395)
.+| ...+. .+.+++...++++++ .|+.|++|..+
T Consensus 418 ~~h~~~~~~---------~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVS---------DLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCcee---------ccccCCCcCeeeecCcCCCceEEEecCC
Confidence 888 43332 488899999999998 78999999864
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.7e-26 Score=252.98 Aligned_cols=258 Identities=15% Similarity=0.215 Sum_probs=208.0
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
+.......+..|.+.|+-+.||++|+|||++++|.+..||++... ..+++.+|...|..+.| +||.++|++|+.|
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~w-SPDdryLlaCg~~ 290 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMW-SPDDRYLLACGFD 290 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEE-CCCCCeEEecCch
Confidence 344455677889999999999999999999999999999987653 36789999999999999 9999999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
..+++||+.+|.+...++ .+++..+.+++|.|++..+++++.++.++.|+....... .
T Consensus 291 e~~~lwDv~tgd~~~~y~-------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~-~-------- 348 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYP-------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG-N-------- 348 (519)
T ss_pred HheeeccCCcchhhhhcc-------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh-c--------
Confidence 999999999998433221 123667889999999999998888989998887442210 0
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
|. ....-.|.++++++|| +++++.+.|..|++|+..+..+...+..|. +|++++.| .||+++
T Consensus 349 ---W~--------gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~lise~~--~its~~iS----~d~k~~ 410 (519)
T KOG0293|consen 349 ---WE--------GVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRGLISEEQ--PITSFSIS----KDGKLA 410 (519)
T ss_pred ---cc--------ccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhccccccC--ceeEEEEc----CCCcEE
Confidence 10 0122468999999999 788888899999999998887776666664 79999999 999998
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
++.- .+..|++||+... +.++.|.+|...- |+..++.--.+..++++|+.|+.|||||...
T Consensus 411 LvnL-~~qei~LWDl~e~------------~lv~kY~Ghkq~~------fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 411 LVNL-QDQEIHLWDLEEN------------KLVRKYFGHKQGH------FIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred EEEc-ccCeeEEeecchh------------hHHHHhhcccccc------eEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 8865 8999999999865 8888899887543 2332222234568999999999999999988
Q ss_pred CC
Q 039790 520 GP 521 (1395)
Q Consensus 520 g~ 521 (1395)
|+
T Consensus 472 gk 473 (519)
T KOG0293|consen 472 GK 473 (519)
T ss_pred Cc
Confidence 75
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=6.6e-27 Score=264.77 Aligned_cols=292 Identities=17% Similarity=0.226 Sum_probs=228.2
Q ss_pred cccceeeeeCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCC--CceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 205 EVTPITKYISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIIT--ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~--~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
..+.+.+|.+|...|.++.|.| .+++|++|+.|+.|+||++.. +++++|.||..+|.+++| +.+|..|+|+|.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~-s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASF-NNCGTSFLSASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhc-cccCCeeeeeeccee
Confidence 4577889999999999999999 899999999999999999977 479999999999999999 999999999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
|++||+++|++ +..+ ..+...+++.|+|++ +.+|+++.++.|+.||++... .
T Consensus 282 lKlwDtETG~~--------------~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-v----------- 334 (503)
T KOG0282|consen 282 LKLWDTETGQV--------------LSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-V----------- 334 (503)
T ss_pred eeeeccccceE--------------EEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-H-----------
Confidence 99999999982 2222 335667899999999 566666778888888875432 1
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
++.+..|-+.|.++.|-++| .++++.+.|++++||+.+...++..+..+..+...+|... |++.+++
T Consensus 335 --------vqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~----P~~~~~~ 401 (503)
T KOG0282|consen 335 --------VQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH----PNGKWFA 401 (503)
T ss_pred --------HHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC----CCCCeeh
Confidence 45566789999999999998 8999999999999999999988776654444467788887 9999998
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.=+ .|+.|.||.+... ........|++|....+ ...+.|||||.+|++|..||.+++||+.+-
T Consensus 402 aQs-~dN~i~ifs~~~~---------~r~nkkK~feGh~vaGy-------s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 402 AQS-MDNYIAIFSTVPP---------FRLNKKKRFEGHSVAGY-------SCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred hhc-cCceEEEEecccc---------cccCHhhhhcceeccCc-------eeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 855 9999999987543 22234456777764432 236899999999999999999999999873
Q ss_pred CCCCCcceeeeeeeecc-ccEEEEecCCC--CcC--cCCCCeEEEEE
Q 039790 521 PNPASTRMDYIAEFTVT-MPILSLTGTTT--DAS--PDGEHIVQIYC 562 (1395)
Q Consensus 521 ~~~~~~~~~~i~~f~~~-~~ils~~~~~~--d~~--~s~dg~V~lWd 562 (1395)
+ .+..+..+ .++...+.... ..+ .+-+|.|++|+
T Consensus 465 k--------l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 K--------LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred h--------hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 3 22333333 33333333320 111 24588999996
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=2.6e-24 Score=245.15 Aligned_cols=264 Identities=14% Similarity=0.246 Sum_probs=211.2
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECC----C
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVD----G 280 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D----g 280 (1395)
....|..|...++-..|+|.|-|+|+|...|.|||||.... ....|+--.++|.+|+| ..++.+|+..|+. |
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~W-d~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISW-DFDSKRIAAVGEGRERFG 129 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeeccccccccee-CCCCcEEEEEecCcccee
Confidence 35678899999999999999999999999999999998774 34567778899999999 8899888877753 4
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.+++||--+. +--+.+|...+.++.|-|...+.+++|+++..+.+..... ++.
T Consensus 130 ~~F~~DSG~S----------------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-----------FKF 182 (603)
T KOG0318|consen 130 HVFLWDSGNS----------------VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-----------FKF 182 (603)
T ss_pred EEEEecCCCc----------------cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-----------eee
Confidence 5777876542 2335577888999999999998888888887777655322 111
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec---CCCCCCeeEEEEeecCCCCCc
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR---PYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~---~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
...+..|...|+|+.|+||| .+|++.+.||+|.|||-.+|+.+..|. +|+| .|++|+|+ ||+.
T Consensus 183 --------k~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG-sIfalsWs----PDs~ 248 (603)
T KOG0318|consen 183 --------KSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG-SIFALSWS----PDST 248 (603)
T ss_pred --------eecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccc-cEEEEEEC----CCCc
Confidence 45567799999999999998 899999999999999999999999998 9998 99999999 9999
Q ss_pred EEEEEecCCCeEEEEECCCCCC---CCCCC----------------------------CcccccEEEEEeccCccccccc
Q 039790 438 VLITGGPLNRELKIWASAEEEG---WLLPS----------------------------DIESWKCTQTLELKSSAELRLE 486 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~---~~~~~----------------------------~~~~~~~l~tl~~h~~~i~~~~ 486 (1395)
.+++++ .|.++||||+.+..- +.... +......++.+.+|...+.
T Consensus 249 ~~~T~S-aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT--- 324 (603)
T KOG0318|consen 249 QFLTVS-ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT--- 324 (603)
T ss_pred eEEEec-CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccccee---
Confidence 999987 999999999987710 10000 0112223344455555443
Q ss_pred ccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 487 DAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 487 ~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
++..++|+.+|++|+.||.|.-|+...|...
T Consensus 325 ------aLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 325 ------ALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred ------EEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 5899999999999999999999999987653
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=2.3e-25 Score=239.20 Aligned_cols=276 Identities=18% Similarity=0.207 Sum_probs=229.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..+.|.++.|++|+.|..|.+|.++ | +.+-..++++|.+.|..+.|..|++.|
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~--------g-------------------dceN~~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVY--------G-------------------DCENFWVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEecc--------c-------------------cccceeeeccccceeEeeeeccCCCEE
Confidence 4455677899999999999999854 1 112334566999999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++++.|.+|+.||+++| +...+++|.+.|+.+.-+.....++.||+.||++++||+++..+...+
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-------------- 171 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-------------- 171 (338)
T ss_pred EEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc--------------
Confidence 99999999999999998 477899999999999864445567889999999999999987633322
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
. ....++.+.|...+..++.+|-++.|.+||.++.. ...++.||.+.|+.+..+++| .
T Consensus 172 ~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d--------------------~~~~lsGh~DtIt~lsls~~g-s 229 (338)
T KOG0265|consen 172 E-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND--------------------GLYTLSGHADTITGLSLSRYG-S 229 (338)
T ss_pred c-cceeEEEEEecccccceeeccccCceeeeccccCc--------------------ceEEeecccCceeeEEeccCC-C
Confidence 1 13456789999999999999999999999986532 268889999999999999999 8
Q ss_pred EEEEEeCCCcEEEEeCCC----CceeEEecCCCC---CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 391 RLASASLDGTVKIWDDRK----STPLAVLRPYDG---HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~s----g~~l~tl~~h~~---~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
++.+-+.|.+|++||++- .+|+..+.+|.- .-...++|+ |+++++-+ |+.|+.+++||....
T Consensus 230 ~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws----p~~~~i~a-gs~dr~vyvwd~~~r------ 298 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS----PNGTKITA-GSADRFVYVWDTTSR------ 298 (338)
T ss_pred ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc----CCCCcccc-ccccceEEEeecccc------
Confidence 999999999999999985 366888888752 145678898 89888766 669999999999887
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.++..+.+|.+.+.. +.|.|...+|.+++.|.+||+=.
T Consensus 299 ------~~lyklpGh~gsvn~---------~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 299 ------RILYKLPGHYGSVNE---------VDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ------cEEEEcCCcceeEEE---------eeecCCCcEEEEeccCceeEeec
Confidence 899999999887654 89999999999999999998743
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=1.6e-24 Score=245.21 Aligned_cols=274 Identities=22% Similarity=0.317 Sum_probs=221.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..+.+.+..|++++.||.|++|+... ...+..+..|...+.++.|++++++|
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLET----------------------------GELLRTLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeC----------------------------CCcEEEEecCCcceeEEEECCCCCEE
Confidence 44455567778888888888887321 12345566788889999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++++.||.|++||+.++ ....+..|...|.++.| .+++.++++++.||.|++||+.+++ ....+
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~ 131 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVETGK--------------CLTTL 131 (289)
T ss_pred EEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEE-cCCCCEEEEecCCCeEEEEECCCcE--------------EEEEe
Confidence 99999999999999985 57778899999999999 7778889988889999999998665 23344
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..+...+.+++|++++..+++++.++.+.+|+..... ....+..|...|.++.|++++ .
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------------------~~~~~~~~~~~i~~~~~~~~~-~ 190 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--------------------CVATLTGHTGEVNSVAFSPDG-E 190 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--------------------cceeEecCccccceEEECCCc-C
Confidence 4677789999999996544444447777777764211 134555788899999999998 7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
.|++++.||.|++||++.++.+..+..|.+ .|.++.|+ +++.++++++ .|+.|++||+.++ +
T Consensus 191 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~----~~~~~~~~~~-~~~~i~i~~~~~~------------~ 252 (289)
T cd00200 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHEN-GVNSVAFS----PDGYLLASGS-EDGTIRVWDLRTG------------E 252 (289)
T ss_pred EEEEecCCCcEEEEECCCCceecchhhcCC-ceEEEEEc----CCCcEEEEEc-CCCcEEEEEcCCc------------e
Confidence 888898999999999999999999988987 99999998 8877777654 7999999999887 7
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.+..+..|...+. .+.|++++.+|++++.|+.|++|+
T Consensus 253 ~~~~~~~~~~~i~---------~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 253 CVQTLSGHTNSVT---------SLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEccccCCcEE---------EEEECCCCCEEEEecCCCeEEecC
Confidence 7888876665443 488999999999999999999996
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=2e-25 Score=243.43 Aligned_cols=282 Identities=15% Similarity=0.189 Sum_probs=231.0
Q ss_pred cCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEE
Q 039790 153 TLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYIC 232 (1395)
Q Consensus 153 s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~La 232 (1395)
.+.|-...+++|+.|++|++||+. + +....++.||-..|.++++|.--.||+
T Consensus 158 avdP~n~wf~tgs~DrtikIwDla-----------------t-----------g~LkltltGhi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 158 AVDPGNEWFATGSADRTIKIWDLA-----------------T-----------GQLKLTLTGHIETVRGVAVSKRHPYLF 209 (460)
T ss_pred eeCCCceeEEecCCCceeEEEEcc-----------------c-----------CeEEEeecchhheeeeeeecccCceEE
Confidence 333444677777777777777733 1 245667889999999999999999999
Q ss_pred EEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 233 YGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 233 sGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
+++.|+.|+.||++..+ ++.+.||-..|+|++. .|.-+.|++|+.|.++||||+++.. .+.++.
T Consensus 210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~l-hPTldvl~t~grDst~RvWDiRtr~--------------~V~~l~ 274 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDL-HPTLDVLVTGGRDSTIRVWDIRTRA--------------SVHVLS 274 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhccccceeEEEec-cccceeEEecCCcceEEEeeecccc--------------eEEEec
Confidence 99999999999999875 7789999999999999 7778899999999999999999976 677788
Q ss_pred CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 312 DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 312 ~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
+|...|.++.+.+.+..++.++.+..|..||...... ...+..|...|.+++.+|.. +.
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt--------------------~~tlt~hkksvral~lhP~e-~~ 333 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT--------------------MITLTHHKKSVRALCLHPKE-NL 333 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeeccCce--------------------eEeeecccceeeEEecCCch-hh
Confidence 9999999999999999899888888888887754322 56677899999999999987 89
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC 471 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~ 471 (1395)
||+++.|. |+-|++..|..+..+.+|.+ -|.++... .|| +++++| ++|.|.+||.+++ ..++.
T Consensus 334 fASas~dn-ik~w~~p~g~f~~nlsgh~~-iintl~~n----sD~-v~~~G~-dng~~~fwdwksg---------~nyQ~ 396 (460)
T KOG0285|consen 334 FASASPDN-IKQWKLPEGEFLQNLSGHNA-IINTLSVN----SDG-VLVSGG-DNGSIMFWDWKSG---------HNYQR 396 (460)
T ss_pred hhccCCcc-ceeccCCccchhhccccccc-eeeeeeec----cCc-eEEEcC-CceEEEEEecCcC---------ccccc
Confidence 99999886 99999999999999999998 99999997 454 677766 9999999999998 23333
Q ss_pred EEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 472 TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 472 l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.++....++.. ...-+...+|...|..|++|..|.+|++|.-+.
T Consensus 397 ~~t~vqpGSl~----sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 397 GQTIVQPGSLE----SEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccccccCCccc----cccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 44444443322 112223588999999999999999999998543
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=2.2e-24 Score=283.76 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=210.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~ 230 (1395)
+.+.+++..|++++.|+.|++|+.... + ..+.. ...++..+. +...|.+++|++ ++.+
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~----~------------~~~~~----~~~~~~~~~-~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESI----I------------KDGRD----IHYPVVELA-SRSKLSGICWNSYIKSQ 547 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcc----c------------ccccc----cccceEEec-ccCceeeEEeccCCCCE
Confidence 455566677777777777777773210 0 00000 001222233 346789999987 5789
Q ss_pred EEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|++|+.||+|+|||+.++ .+..+.+|.+.|++++|++.++.+|++|+.||+|++||+.++. .+..
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--------------~~~~ 613 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--------------SIGT 613 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--------------EEEE
Confidence 999999999999999987 4678899999999999954688999999999999999999876 2223
Q ss_pred ecCCCCCccEEEEeCC-CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 310 LADGDSVHPRVCWHPH-KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~-~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
+.. ...+.++.|++. +..+++++.++.+.+|+...... .+..+.+|...|+++.|. ++
T Consensus 614 ~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-------------------~~~~~~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 614 IKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-------------------PLCTMIGHSKTVSYVRFV-DS 672 (793)
T ss_pred Eec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-------------------cceEecCCCCCEEEEEEe-CC
Confidence 333 346778999665 55555555566666666533211 145567899999999997 55
Q ss_pred CcEEEEEeCCCcEEEEeCCC------CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 389 TTRLASASLDGTVKIWDDRK------STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~s------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
.+|++++.|++|+|||++. +.++.++.+|.. .+.+++|+ +++.+|++++ .|+.|+||+....
T Consensus 673 -~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s----~~~~~lasgs-~D~~v~iw~~~~~----- 740 (793)
T PLN00181 673 -STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLS----VSDGYIATGS-ETNEVFVYHKAFP----- 740 (793)
T ss_pred -CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEc----CCCCEEEEEe-CCCEEEEEECCCC-----
Confidence 7999999999999999984 367889999987 99999999 8999999866 9999999998765
Q ss_pred CCCcccccEEEEEeccCcc-cc---cccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 463 PSDIESWKCTQTLELKSSA-EL---RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~-i~---~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
..+..+...... +. ......++..++|+++|.+|++|+.||.|+||++
T Consensus 741 -------~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 -------MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred -------CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 333222221110 00 0011223457999999999999999999999986
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=4e-24 Score=281.31 Aligned_cols=250 Identities=13% Similarity=0.180 Sum_probs=195.7
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcE
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV 282 (1395)
+..|.+.|++++|+++|++||+|+.||.|+|||.... ....+. +...|.+++|++.++.+|++|+.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4458999999999999999999999999999997542 122333 346799999966678999999999999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC-CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH-KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~-~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
+|||+.+++ .+..+..|...|++++|++. +..+++++.++.+.+|+... +..
T Consensus 558 ~lWd~~~~~--------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~------------ 610 (793)
T PLN00181 558 QVWDVARSQ--------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS------------ 610 (793)
T ss_pred EEEECCCCe--------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE------------
Confidence 999999876 45556778899999999985 44455555556666666532 211
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST-PLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~-~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
+..+. +...|.++.|++.++.+|++|+.||.|++||++.+. ++.++.+|.. .|+++.|. ++.+|+
T Consensus 611 -------~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-----~~~~lv 676 (793)
T PLN00181 611 -------IGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-----DSSTLV 676 (793)
T ss_pred -------EEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-----CCCEEE
Confidence 33444 336799999976544899999999999999999875 6788899987 99999995 677888
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+++ .|++|+|||+..+. ....+.++.++.+|...+. .+.|+++|.+|++|+.|+.|++|+...
T Consensus 677 s~s-~D~~ikiWd~~~~~------~~~~~~~l~~~~gh~~~i~---------~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 677 SSS-TDNTLKLWDLSMSI------SGINETPLHSFMGHTNVKN---------FVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred EEE-CCCEEEEEeCCCCc------cccCCcceEEEcCCCCCee---------EEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 876 99999999997541 0112467888888875432 488999999999999999999999765
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=1.3e-24 Score=239.49 Aligned_cols=279 Identities=15% Similarity=0.195 Sum_probs=222.1
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCC---CEEEEEE
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNR---NYICYGL 235 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg---~~LasGs 235 (1395)
..|++++.||.+|+|+. .++.+..+.||.+.|..++|-... ..|++++
T Consensus 116 ~~IltgsYDg~~riWd~-----------------------------~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 116 KWILTGSYDGTSRIWDL-----------------------------KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred ceEEEeecCCeeEEEec-----------------------------CCceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence 78999999999999993 346778889999999988875533 4699999
Q ss_pred cCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc------------c
Q 039790 236 KLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP------------Q 298 (1395)
Q Consensus 236 ~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~------------~ 298 (1395)
.|.++++|.++.+ ....-+||.+.|-+|.. ..+|..+++|+.|.+|+||+..+.. ..... .
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv-~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~ 244 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV-DSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKRE 244 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEe-cCCCCeEEeecccceeeecccCCCc-cccccccchhhhhhhhhh
Confidence 9999999999886 23344599999999999 8999999999999999999943321 11100 1
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
.....-..+.+..+|...|..|.|++ ...++.++.+..|..||....+. ...+ .....
T Consensus 245 ~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~--------------------~~~~-~~~ks 302 (423)
T KOG0313|consen 245 KEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL--------------------KSTL-TTNKS 302 (423)
T ss_pred hcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc--------------------eeee-ecCcc
Confidence 11222335667889999999999998 55678888888888888755332 1122 24567
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKS---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
++|+.+++.. .+|++|+.|..||+||.|++ ...++|.+|.+ +|.+|.|+ |...+++.+|+.|+++++||++
T Consensus 303 l~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkws----p~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 303 LNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWS----PTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred eeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecC----CCCceEEEEEecCCeEEEEEec
Confidence 9999999987 89999999999999999986 35678999998 99999999 8888888888899999999999
Q ss_pred CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 456 tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
+. +..+..+.+|.+.+.+ +.| .+|.+|++|+.|+.|+|+..
T Consensus 377 S~-----------k~plydI~~h~DKvl~---------vdW-~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 377 ST-----------KAPLYDIAGHNDKVLS---------VDW-NEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cC-----------CCcceeeccCCceEEE---------Eec-cCCceEEeccCcceEEEecc
Confidence 87 2378888888877643 555 45779999999999999874
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=5.8e-26 Score=243.64 Aligned_cols=275 Identities=20% Similarity=0.253 Sum_probs=217.2
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceE---------EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRS---------LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~---------~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
+....+.|..|+|||.||++|+.||.|.|||..+|+++ .|--|.+.|.|++| +.|...|++|+.||.|+|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-SRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-SRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee-cccHHHhhccCcCCcEEE
Confidence 34567889999999999999999999999999998432 34458899999999 999999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|.+.+|.|+..
T Consensus 290 Wri~tG~ClRr--------------------------------------------------------------------- 300 (508)
T KOG0275|consen 290 WRIETGQCLRR--------------------------------------------------------------------- 300 (508)
T ss_pred EEEecchHHHH---------------------------------------------------------------------
Confidence 99999883211
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
.-..|...|+|+.|+.|+ ..+++++.|.+|||.-+.+|++++.|+||.. .|+.+.|+ +||.++++++
T Consensus 301 ------FdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft----~dG~~iisaS- 367 (508)
T KOG0275|consen 301 ------FDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFT----DDGHHIISAS- 367 (508)
T ss_pred ------hhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccc-cccceEEc----CCCCeEEEec-
Confidence 112599999999999998 7999999999999999999999999999998 99999999 9999999976
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~ 524 (1395)
.||+|++|+..+. .|+.+|+..+. +..++.++-++.+...++.+-..++|||.++...
T Consensus 368 sDgtvkvW~~Ktt------------eC~~Tfk~~~~------d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ---- 425 (508)
T KOG0275|consen 368 SDGTVKVWHGKTT------------ECLSTFKPLGT------DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ---- 425 (508)
T ss_pred CCccEEEecCcch------------hhhhhccCCCC------cccceeEEEcCCCCceEEEEcCCCeEEEEeccce----
Confidence 9999999999988 99999986652 2335667888888889999999999999998631
Q ss_pred Ccceeeeeeeecc--------ccEEEEecCCCCcCcCCCCeEEEEEcCCCceeee---cccceEEecCCC-CCeecccCC
Q 039790 525 STRMDYIAEFTVT--------MPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQY---ALDLSQCLPPPL-ENAELEKTD 592 (1395)
Q Consensus 525 ~~~~~~i~~f~~~--------~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~~~---~~~~~~cl~~s~-d~l~~~~sd 592 (1395)
.+..|... ..+++.-|.. ..+..+|+.++.|.+.+|++... |-....-+.-.+ .++..++++
T Consensus 426 -----vVrsfsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 426 -----VVRSFSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred -----EEeeeccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc
Confidence 22223211 1222223332 33467899999999999988542 222222333333 347777888
Q ss_pred CceEEEe
Q 039790 593 SNATRAF 599 (1395)
Q Consensus 593 ~~v~~iW 599 (1395)
++.+++|
T Consensus 500 DgllKLW 506 (508)
T KOG0275|consen 500 DGLLKLW 506 (508)
T ss_pred cchhhhc
Confidence 8999888
No 49
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=4.2e-23 Score=253.06 Aligned_cols=295 Identities=18% Similarity=0.182 Sum_probs=201.4
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----------c----eEEeccCCCCeEEEEEeeC-CCCEEEEEECCCc
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITA----------L----RSLLRGHTQRVTDMAFFAE-DVHLLASASVDGR 281 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----------~----~~~l~~H~~~V~slaf~s~-dg~~LaSgs~Dgt 281 (1395)
..|....+++|+..+++++.+..+..|+...+ . ...+.+|.+.|++++| ++ ++++|++|+.||+
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f-sP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF-NPFDPQKLFTASEDGT 99 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE-cCCCCCEEEEEeCCCE
Confidence 33444445556555555555555555654433 1 1247899999999999 65 8899999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEE-EeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILML-AIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
|+|||+.++.... .....+..+.+|...|.+++|+|.+..++++ +.++.+.+||... +.
T Consensus 100 IkIWdi~~~~~~~-------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~------------ 159 (493)
T PTZ00421 100 IMGWGIPEEGLTQ-------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GK------------ 159 (493)
T ss_pred EEEEecCCCcccc-------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-Ce------------
Confidence 9999998753110 1112345567788999999999987655555 4455566665532 21
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
....+.+|.+.|++++|+++| .+|++|+.||+|+|||+++++.+.++.+|.+..+..+.|. +++..|+
T Consensus 160 -------~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~----~~~~~iv 227 (493)
T PTZ00421 160 -------AVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA----KRKDLII 227 (493)
T ss_pred -------EEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc----CCCCeEE
Confidence 145677899999999999998 8999999999999999999999999999986445678898 8888888
Q ss_pred EEe---cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEE
Q 039790 441 TGG---PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIH 516 (1395)
Q Consensus 441 s~G---s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWd 516 (1395)
++| +.|+.|+|||+++.. .++..+..+... ......|++++.+|++++ .|+.|++|+
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~-----------~p~~~~~~d~~~--------~~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMA-----------SPYSTVDLDQSS--------ALFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCC-----------CceeEeccCCCC--------ceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 776 248999999998651 233333333221 112467899999998887 499999999
Q ss_pred cCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC-cCCCCeEEEEEcCCCcee
Q 039790 517 MDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS-PDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 517 l~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~-~s~dg~V~lWdv~t~~i~ 569 (1395)
+..+. +....+|....+...+.......+ ...-...++|.+....+.
T Consensus 289 l~~~~------~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~~~i~ 336 (493)
T PTZ00421 289 LMNER------LTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALTYHSLY 336 (493)
T ss_pred eeCCc------eEEEeeccCCCCCcceEecccccccccceeeeEEEEecCCeEE
Confidence 98753 223334444334333333331111 122345688888766554
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.4e-25 Score=229.74 Aligned_cols=268 Identities=18% Similarity=0.287 Sum_probs=213.0
Q ss_pred eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCC--CceEEeccCCCCe
Q 039790 184 IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIIT--ALRSLLRGHTQRV 260 (1395)
Q Consensus 184 ~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~--~~~~~l~~H~~~V 260 (1395)
.|.++++.++....+. ......|.. .+.+.+++|+++ .+.+++++.||+++|||... +.++.++.|..+|
T Consensus 35 ~G~G~L~ile~~~~~g------i~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV 107 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKG------IQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREV 107 (311)
T ss_pred ccCceEEEEecCCCCC------eEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhhe
Confidence 5566777776642111 122233332 367889999984 57788899999999999654 3688999999999
Q ss_pred EEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEE
Q 039790 261 TDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILK 340 (1395)
Q Consensus 261 ~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~ 340 (1395)
.++.|+..++..+++++.||+|++|+...+. .+.++.+|...|+...|+|....+++++++++..+
T Consensus 108 ~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~ 173 (311)
T KOG0277|consen 108 YSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--------------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLR 173 (311)
T ss_pred EEeccccccceeEEeeccCCceEeecCCCCc--------------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEE
Confidence 9999977788889999999999999998776 67778899999999999999999999998887777
Q ss_pred EEcCCC-CccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCC
Q 039790 341 IDSNRV-GKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPY 418 (1395)
Q Consensus 341 ~d~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h 418 (1395)
+|+.+. ++ ...+..|...|.|+.|+..+.++|+||+.|+.||+||+|.- .++..+.+|
T Consensus 174 lwdvr~~gk--------------------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh 233 (311)
T KOG0277|consen 174 LWDVRSPGK--------------------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH 233 (311)
T ss_pred EEEecCCCc--------------------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence 766443 22 23477899999999999988889999999999999999984 789999999
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
.- .|..|.|| |...-|+++++.|-++||||...++ .++.+++.|..-+. .+.|+.
T Consensus 234 ~~-AVRkvk~S----ph~~~lLaSasYDmT~riw~~~~~d-----------s~~e~~~~HtEFv~---------g~Dws~ 288 (311)
T KOG0277|consen 234 GL-AVRKVKFS----PHHASLLASASYDMTVRIWDPERQD-----------SAIETVDHHTEFVC---------GLDWSL 288 (311)
T ss_pred ce-EEEEEecC----cchhhHhhhccccceEEecccccch-----------hhhhhhhccceEEe---------cccccc
Confidence 86 99999999 7666555556799999999997551 55666666654332 244433
Q ss_pred -CCCEEEEEeCCCeEEEEEc
Q 039790 499 -AGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 499 -dg~~LaSgs~Dg~I~iWdl 517 (1395)
++.++++.+.|+.+|||+-
T Consensus 289 ~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 289 FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccCceeeecccccceeeecc
Confidence 6789999999999999983
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-24 Score=258.40 Aligned_cols=287 Identities=20% Similarity=0.256 Sum_probs=225.7
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
++|......|.+++|+|..-+|.++...|.|++||.+-+ ++..|.+|.++|..|+| ++.+.+|+|||.|-.|+||+..
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~F-H~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDF-HPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeee-cCCCCeEEecCCccEEEEEecc
Confidence 456667788999999999999999999999999999988 58899999999999999 8899999999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+.+ |+....+|.+.|..+.||+.-.+|++++.+.+| ++|..... +.
T Consensus 82 ~rr--------------clftL~GHlDYVRt~~FHheyPWIlSASDDQTI-rIWNwqsr-------------------~~ 127 (1202)
T KOG0292|consen 82 TRR--------------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTI-RIWNWQSR-------------------KC 127 (1202)
T ss_pred cce--------------ehhhhccccceeEEeeccCCCceEEEccCCCeE-EEEeccCC-------------------ce
Confidence 987 566777899999999999999877766555555 55543332 22
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--------C---------------------ceeEEecCCC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--------S---------------------TPLAVLRPYD 419 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--------g---------------------~~l~tl~~h~ 419 (1395)
+.++.||...|.|..|+|.. .+++|+|.|.+|||||+.. + ...+.+.||+
T Consensus 128 iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 128 IAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred EEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 78899999999999999976 7999999999999999841 1 1234678998
Q ss_pred CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC
Q 039790 420 GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA 499 (1395)
Q Consensus 420 ~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d 499 (1395)
. .|+-++|. |.-..+++++ +|+.|++|.+... +.|+ +.+..+|.+.+. ++.|+|.
T Consensus 207 R-GVNwaAfh----pTlpliVSG~-DDRqVKlWrmnet---------KaWE-vDtcrgH~nnVs---------svlfhp~ 261 (1202)
T KOG0292|consen 207 R-GVNWAAFH----PTLPLIVSGA-DDRQVKLWRMNET---------KAWE-VDTCRGHYNNVS---------SVLFHPH 261 (1202)
T ss_pred c-ccceEEec----CCcceEEecC-CcceeeEEEeccc---------ccee-ehhhhcccCCcc---------eEEecCc
Confidence 7 99999997 8888888866 9999999999765 4444 345677777654 4888999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeecc-ccEEEEecCC-CCcC-cCCCCeEEEEEcCC
Q 039790 500 GLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVT-MPILSLTGTT-TDAS-PDGEHIVQIYCVQT 565 (1395)
Q Consensus 500 g~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~-~~ils~~~~~-~d~~-~s~dg~V~lWdv~t 565 (1395)
..+|++.+.|++|+|||+.... . +..|.-. ...+.++..+ ++.+ +..|+-+.||-++-
T Consensus 262 q~lIlSnsEDksirVwDm~kRt-----~---v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRT-----S---VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred cceeEecCCCccEEEEeccccc-----c---eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence 9999999999999999997633 2 2223211 2223333332 1222 34577788887764
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.1e-25 Score=242.00 Aligned_cols=252 Identities=13% Similarity=0.074 Sum_probs=201.5
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC--CCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH--TQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H--~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.+...++.+|...|..+.||||.+||++|+.|..+.+||+.+|......+| ...+.+++| .|||..+++|+.|++|.
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W-~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW-CPDGFRFVTGSPDRTII 337 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE-ccCCceeEecCCCCcEE
Confidence 466788999999999999999999999999999999999999965554444 488999999 89999999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
.||++.... + ...+.....+.+++..++|.++++++.+..+..++......
T Consensus 338 ~wdlDgn~~--------~------~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--------------- 388 (519)
T KOG0293|consen 338 MWDLDGNIL--------G------NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--------------- 388 (519)
T ss_pred EecCCcchh--------h------cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---------------
Confidence 999985430 0 11122234577899999999999999998888876543211
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
.. +......|+++++|.|+ +++++.-.+..|++||+...+.++.+.||+. ..|..-||- .....++.+
T Consensus 389 -----r~-lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg----g~~~~fiaS 457 (519)
T KOG0293|consen 389 -----RG-LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG----GGNDKFIAS 457 (519)
T ss_pred -----hc-cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC----CCCcceEEe
Confidence 11 22345689999999998 7888888999999999999999999999974 245566775 333344455
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCCCeEEEEEcCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
||.|+.|+||+..++ +.+.++.+|...+.+ ++|+| +...+|++++||+|+||-...
T Consensus 458 GSED~kvyIWhr~sg------------kll~~LsGHs~~vNc---------VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISG------------KLLAVLSGHSKTVNC---------VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCceEEEEEccCC------------ceeEeecCCcceeeE---------EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 779999999999998 999999999976543 66666 556899999999999998653
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=4.9e-24 Score=235.10 Aligned_cols=305 Identities=16% Similarity=0.194 Sum_probs=227.0
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCC--CEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDV--HLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg--~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
.|.++|.++... +++|++|++||.+||||..+.+...+.||+++|.+++|...+. ..|++++.|.++++|.++.+.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 488999998887 8899999999999999999999999999999999999955443 369999999999999999876
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCC--ccccccCCCC---CccCccccc
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVG--KGERFSAEEP---LKCPVDELI 366 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~--~~~~~s~~~~---~~~~~~~~~ 366 (1395)
.. +.++....+|...|-+|...+++..++.++.+..+.+|+..... ..+.++.... .+-......
T Consensus 181 ~~----------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 181 NK----------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred hh----------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 21 12333444899999999999999877777777777777622211 1111211100 011122334
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
.++..+.||...|.++.|++. ..+.++|.|.+|+.||+.++.++.++.+.. .++|+.++ |...+|++++ .|
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~~----~~~~Ll~~gs-sd 321 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISYS----PLSKLLASGS-SD 321 (423)
T ss_pred CceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCc--ceeEeecc----cccceeeecC-CC
Confidence 558889999999999999983 699999999999999999999999998775 69999998 8887777754 99
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
..|++||.+++ ..--..++|.+|.+.+.. +.|+|. -.+|++|+.||++++||++..+.
T Consensus 322 r~irl~DPR~~---------~gs~v~~s~~gH~nwVss---------vkwsp~~~~~~~S~S~D~t~klWDvRS~k~--- 380 (423)
T KOG0313|consen 322 RHIRLWDPRTG---------DGSVVSQSLIGHKNWVSS---------VKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--- 380 (423)
T ss_pred CceeecCCCCC---------CCceeEEeeecchhhhhh---------eecCCCCceEEEEEecCCeEEEEEeccCCC---
Confidence 99999999998 333566889999876543 666665 56789999999999999987442
Q ss_pred cceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEc
Q 039790 526 TRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCV 563 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv 563 (1395)
-+..|..+ ...+++.+-.....+ ++.|..|+||.-
T Consensus 381 -plydI~~h--~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 381 -PLYDIAGH--NDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred -cceeeccC--CceEEEEeccCCceEEeccCcceEEEecc
Confidence 22233322 234455554431122 234778888753
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.5e-24 Score=248.56 Aligned_cols=246 Identities=17% Similarity=0.224 Sum_probs=201.1
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..++.+.-..-.|....|-.-.+++++|+.|..||||+.+++ +++.|..|.+.|.+|+. +|...+++|++.|-+|++|
T Consensus 46 tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iav-HPt~P~vLtsSDDm~iKlW 124 (794)
T KOG0276|consen 46 TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAV-HPTLPYVLTSSDDMTIKLW 124 (794)
T ss_pred eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeee-cCCCCeEEecCCccEEEEe
Confidence 344555555577888889999999999999999999999998 58899999999999999 7888999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|.+.+ ..+.+++.+|...|.+++|+|.+..-|++++-++.+++|......
T Consensus 125 ~we~~-------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~----------------- 174 (794)
T KOG0276|consen 125 DWENE-------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH----------------- 174 (794)
T ss_pred eccCc-------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----------------
Confidence 99864 347789999999999999999998877777765555555432211
Q ss_pred ccceEEEcccCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLT-TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~-~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+..++.+|...|+|+.|-+-|. -+|+||+.|.+|+|||..+..|++++.||.. .|..++|. |.-.++++|+
T Consensus 175 --~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fh----p~lpiiisgs- 246 (794)
T KOG0276|consen 175 --PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFH----PELPIIISGS- 246 (794)
T ss_pred --CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEec----CCCcEEEEec-
Confidence 1567889999999999987652 3999999999999999999999999999997 99999997 8888888855
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeE
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAI 512 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I 512 (1395)
.||++|||+..+- +...++......+. +++....+..++.|.+.|.|
T Consensus 247 EDGTvriWhs~Ty------------~lE~tLn~gleRvW---------~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 247 EDGTVRIWNSKTY------------KLEKTLNYGLERVW---------CIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred CCccEEEecCcce------------ehhhhhhcCCceEE---------EEeecCCCCeEEEeccCCcE
Confidence 9999999998776 66666665554432 25555666667777666654
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=1.3e-23 Score=231.03 Aligned_cols=294 Identities=15% Similarity=0.156 Sum_probs=222.6
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
++..|..+.++||+.|....+|+... +..+..+.+|.+.|+|+.|+.||.||
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~----------------------------ge~~~eltgHKDSVt~~~FshdgtlL 121 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDIST----------------------------GEFAGELTGHKDSVTCCSFSHDGTLL 121 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccC----------------------------CcceeEecCCCCceEEEEEccCceEE
Confidence 44455667888888888888888331 12446678999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
|+|..+|.|+||+..++. ...+...-+.|.-|.| +|.+.+|+.|+.||.|.+|.+.++. ..+++
T Consensus 122 ATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~W-Hp~a~illAG~~DGsvWmw~ip~~~--------------~~kv~ 186 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKW-HPRAHILLAGSTDGSVWMWQIPSQA--------------LCKVM 186 (399)
T ss_pred EecCCCccEEEEEcccCceEEEeecccCceEEEEe-cccccEEEeecCCCcEEEEECCCcc--------------eeeEe
Confidence 999999999999999984 4555556667888899 6789999999999999999999854 45778
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccc-ccc-------------CCCC--CccCcccc------cc-
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGE-RFS-------------AEEP--LKCPVDEL------IN- 367 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~-~~s-------------~~~~--~~~~~~~~------~~- 367 (1395)
.+|...+++=+|.|+|++++.+-.++.+++|+... +... ..+ ..+. +.|..+.. ..
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 88999999999999998777777766666666543 2210 000 0000 00100000 00
Q ss_pred ---------ceEEEcccCCCeEEEEEecCCC--cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC
Q 039790 368 ---------GVQLVGKHDGEITELSMCQWLT--TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 368 ---------~~~~l~~h~~~V~slafspdg~--~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg 436 (1395)
.......+...+.||.|.|... .+.|+|+.||+|-|||+...++.+.+. |.. .|..+.|. + .
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~-~V~~l~w~----~-t 338 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HED-GVTKLKWL----N-T 338 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCC-ceEEEEEc----C-c
Confidence 0111123455555555555432 488999999999999999888766665 665 79999997 5 6
Q ss_pred cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.+|++++ .||.|++||.++| +++.++.+|...+.. ++++++++++++++.|++.+||+
T Consensus 339 ~~l~t~c-~~g~v~~wDaRtG------------~l~~~y~GH~~~Il~---------f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTAC-ANGKVRQWDARTG------------QLKFTYTGHQMGILD---------FALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeec-cCceEEeeecccc------------ceEEEEecCchheeE---------EEEcCCCcEEEEecCCCeEEEEe
Confidence 7888877 9999999999999 999999999987754 88999999999999999999998
Q ss_pred cC
Q 039790 517 MD 518 (1395)
Q Consensus 517 l~ 518 (1395)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 64
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=221.20 Aligned_cols=286 Identities=17% Similarity=0.238 Sum_probs=225.3
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
+.+.+|...|.+|+|+.+|.+|++|+.|++++||+++... ....++|.+.|-.++|++.+.++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5677899999999999999999999999999999998863 3367899999999999888899999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
++.+++ +........ -.-++|+|+|+++++++.++.+..+|.++....
T Consensus 94 ~r~~k~--------------~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~----------------- 141 (313)
T KOG1407|consen 94 IRSGKC--------------TARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIV----------------- 141 (313)
T ss_pred eccCcE--------------EEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEeccccee-----------------
Confidence 999882 222222122 235899999999999999999999998764321
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
.-......++.++|+-++ .+|+....-|+|.|.....-+++.++++|.. .+.||.|+ |+|+++++|+ .|
T Consensus 142 ----~~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~----p~GryfA~Gs-AD 210 (313)
T KOG1407|consen 142 ----NEEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPS-NCICIEFD----PDGRYFATGS-AD 210 (313)
T ss_pred ----ehhcccceeeeeeecCCC-CEEEEecCCceEEEEeccccccccccccCCc-ceEEEEEC----CCCceEeecc-cc
Confidence 111244568889999766 6777667779999999999999999999997 89999999 9999999965 99
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~ 526 (1395)
..+.+||+..- -|++.|.-+.-. +..+.||.||++|++++.|..|-|-++++|..
T Consensus 211 AlvSLWD~~EL------------iC~R~isRldwp---------VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~---- 265 (313)
T KOG1407|consen 211 ALVSLWDVDEL------------ICERCISRLDWP---------VRTLSFSHDGRMLASASEDHFIDIAEVETGDR---- 265 (313)
T ss_pred ceeeccChhHh------------hhheeeccccCc---------eEEEEeccCcceeeccCccceEEeEecccCCe----
Confidence 99999999877 888888755444 44699999999999999999999999998752
Q ss_pred ceeee--------eeeeccccEEEEecCCCCcCc-CCCCeEEEEEcC
Q 039790 527 RMDYI--------AEFTVTMPILSLTGTTTDASP-DGEHIVQIYCVQ 564 (1395)
Q Consensus 527 ~~~~i--------~~f~~~~~ils~~~~~~d~~~-s~dg~V~lWdv~ 564 (1395)
+..| -.+....+++.+.....+.-. -+.|.|+||-+.
T Consensus 266 -~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 266 -VWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred -EEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 1111 112222456666655422211 134788888654
No 57
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=6.2e-23 Score=252.42 Aligned_cols=275 Identities=18% Similarity=0.198 Sum_probs=197.2
Q ss_pred EEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 234 GLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
|+.+|.|++|+.... .+..+.+|.+.|.+++| +++ +++|++|+.||+|+|||+.++.... ......+..+.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~laf-sP~~~~lLASgS~DgtIrIWDi~t~~~~~------~~i~~p~~~L~ 122 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQF-NPCFSEILASGSEDLTIRVWEIPHNDESV------KEIKDPQCILK 122 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEE-cCCCCCEEEEEeCCCeEEEEECCCCCccc------cccccceEEee
Confidence 566889999998765 46789999999999999 554 8899999999999999998653100 00011233456
Q ss_pred CCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 312 DGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 312 ~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
+|...|.+++|+|++..++++++ ++.+.+||... +.. ...+. |...|.+++|+++| .
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~-------------------~~~i~-~~~~V~SlswspdG-~ 180 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN-EKR-------------------AFQIN-MPKKLSSLKWNIKG-N 180 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC-CcE-------------------EEEEe-cCCcEEEEEECCCC-C
Confidence 78889999999999988776655 55555555432 211 22333 56789999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeE-----EEEeecCCCCCcEEEEEecCC---CeEEEEECCCCCCCCC
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNC-----VTFLIGPHPQHIVLITGGPLN---RELKIWASAEEEGWLL 462 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~s-----V~fs~~~~pdg~~L~s~Gs~D---g~I~IWDl~tg~~~~~ 462 (1395)
+|++++.|+.|+|||++++.++.++.+|.+ .+.+ ..|+ +++.+|+++|..+ ++|+|||+++.
T Consensus 181 lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v~~~~fs----~d~~~IlTtG~d~~~~R~VkLWDlr~~----- 250 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNIWIDGLG----GDDNYILSTGFSKNNMREMKLWDLKNT----- 250 (568)
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEEEeeeEc----CCCCEEEEEEcCCCCccEEEEEECCCC-----
Confidence 999999999999999999999999999987 4433 3345 7888999988332 47999999853
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEE
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILS 542 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils 542 (1395)
..++..+..+..... ....+.+++|.++++|+.|+.||+|++..+ .+.++.+|....+...
T Consensus 251 ------~~pl~~~~ld~~~~~-------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~------~~~~l~~~~s~~p~~g 311 (568)
T PTZ00420 251 ------TSALVTMSIDNASAP-------LIPHYDESTGLIYLIGKGDGNCRYYQHSLG------SIRKVNEYKSCSPFRS 311 (568)
T ss_pred ------CCceEEEEecCCccc-------eEEeeeCCCCCEEEEEECCCeEEEEEccCC------cEEeecccccCCCccc
Confidence 145555544332110 012344667999999999999999999764 4677888887777777
Q ss_pred EecCCCCcC-cCCCCeEEEEEcCCC
Q 039790 543 LTGTTTDAS-PDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 543 ~~~~~~d~~-~s~dg~V~lWdv~t~ 566 (1395)
+...+...+ ...-...|+|-+...
T Consensus 312 ~~f~Pkr~~dv~~cEi~R~~kl~~~ 336 (568)
T PTZ00420 312 FGFLPKQICDVYKCEIGRVYKNENN 336 (568)
T ss_pred eEEccccccCchhhhHhHHhhhcCC
Confidence 777763332 122234567766543
No 58
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=7.2e-24 Score=249.56 Aligned_cols=256 Identities=18% Similarity=0.236 Sum_probs=214.9
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
++++++.. +.+.|..|-|.++|++.|.+.|.+.|||+.... +.+.+.|.+.|++|+. .+|+..+++||.|.+|++|
T Consensus 405 kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~-~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 405 KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL-SPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee-cCCCCceEEecCCcEEEEE
Confidence 67777765 489999999999999999999999999999874 5677899999999999 9999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEE--EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 286 NITEGPDEEDKPQILGKIVVAI--QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l--~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
|+.--.. .+. +.+.+..+ ...-.-...+.++.++|++.+++++--++++.++......
T Consensus 482 df~l~~~---~~g-t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---------------- 541 (888)
T KOG0306|consen 482 DFKLVVS---VPG-TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---------------- 541 (888)
T ss_pred eEEEEec---cCc-ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee----------------
Confidence 9864321 000 01111111 0111235678899999999888877778888777664321
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
-...+.||.-+|.|+.++||+ .+++|||.|+.|+||-+.-|.|-+.|-+|++ .|.+|.|. |....+++||
T Consensus 542 ----FflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fAHdD-Svm~V~F~----P~~~~FFt~g 611 (888)
T KOG0306|consen 542 ----FFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFAHDD-SVMSVQFL----PKTHLFFTCG 611 (888)
T ss_pred ----eeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhhcccC-ceeEEEEc----ccceeEEEec
Confidence 145677899999999999998 8999999999999999999999999999998 99999999 8888888887
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.|+.|+-||-... .+++++.+|...+++ ++.+++|.++++++.|.+|++|.-
T Consensus 612 -KD~kvKqWDg~kF------------e~iq~L~~H~~ev~c---------Lav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 612 -KDGKVKQWDGEKF------------EEIQKLDGHHSEVWC---------LAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred -CcceEEeechhhh------------hhheeeccchheeee---------eEEcCCCCeEEeccCCceeEeeec
Confidence 9999999998877 999999999987754 999999999999999999999984
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=257.56 Aligned_cols=243 Identities=23% Similarity=0.345 Sum_probs=205.6
Q ss_pred ceee-eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 208 PITK-YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 208 ~i~~-l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.+.. +.||.+.|++++|..-+.+|++|+.|.+++|||..+| +...+.+|...|.++.. .+.++++|+.|.+|++|
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVW 316 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc---cCceEeeccCCceEEEE
Confidence 3444 8899999999999988899999999999999999998 68899999999999988 67789999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
++.++. ++.+..+|...|.++..+ +..+++++.++.|.+|+.. .++ |
T Consensus 317 ~v~n~~--------------~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~-----------c----- 363 (537)
T KOG0274|consen 317 DVTNGA--------------CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGK-----------C----- 363 (537)
T ss_pred eccCcc--------------eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh-hce-----------e-----
Confidence 999888 677777799999999887 6677777788877777664 222 2
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+..+.+|...|+++.+... .++++|+.|++|++||+++. +|++++.+|.. -|..+.+ .+.+|++++
T Consensus 364 ---l~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~~------~~~~Lvs~~- 430 (537)
T KOG0274|consen 364 ---LKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-LVSSLLL------RDNFLVSSS- 430 (537)
T ss_pred ---eeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcc-ccccccc------ccceeEecc-
Confidence 7888999999999988764 68999999999999999999 99999999987 7777776 477888865
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEecc-CcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELK-SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h-~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
.|++|++||..++ .|++++.++ ...+. .+++ ....+++++.|+.+++||+..+..
T Consensus 431 aD~~Ik~WD~~~~------------~~~~~~~~~~~~~v~---------~l~~--~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 431 ADGTIKLWDAEEG------------ECLRTLEGRHVGGVS---------ALAL--GKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ccccEEEeecccC------------ceeeeeccCCcccEE---------Eeec--CcceEEEEecCCeeEEEecccCch
Confidence 9999999999988 999999984 33321 1222 257888999999999999998753
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=217.36 Aligned_cols=272 Identities=15% Similarity=0.148 Sum_probs=213.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+-.--++.+.++++.|++||+|+. +.+.+|++|.+|...|..++.+.|...|
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp----------------------------~rg~liktYsghG~EVlD~~~s~Dnskf 74 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNP----------------------------LRGALIKTYSGHGHEVLDAALSSDNSKF 74 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecc----------------------------cccceeeeecCCCceeeecccccccccc
Confidence 333445678888888888888883 2457889999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.|..|.+||+++|+ .+.|++|.+.|+.++| ..+...+++|+.|.+|++||.++... ..++++
T Consensus 75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~f-NeesSVv~SgsfD~s~r~wDCRS~s~------------ePiQil 141 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRF-NEESSVVASGSFDSSVRLWDCRSRSF------------EPIQIL 141 (307)
T ss_pred ccCCCCceEEEEEcccCeeeeecccccceeeEEEe-cCcceEEEeccccceeEEEEcccCCC------------Cccchh
Confidence 999999999999999995 7899999999999999 88899999999999999999998752 256667
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
......|.+|.... ..|++++.++.+..++.+...- ...-...+|+|++|++|+ +
T Consensus 142 dea~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l----------------------~sDy~g~pit~vs~s~d~-n 196 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTL----------------------SSDYFGHPITSVSFSKDG-N 196 (307)
T ss_pred hhhcCceeEEEecc--cEEEeeccCCcEEEEEeeccee----------------------ehhhcCCcceeEEecCCC-C
Confidence 77777777777654 4578888888888888754221 112245689999999999 8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCee--EEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVN--CVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~--sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
.++.++.|++|++.|-.+|+.+..++||.+ .-+ .++++ ....++++ ||.||.|.+||+...
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn-~eykldc~l~----qsdthV~s-gSEDG~Vy~wdLvd~----------- 259 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKN-MEYKLDCCLN----QSDTHVFS-GSEDGKVYFWDLVDE----------- 259 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhccccc-ceeeeeeeec----ccceeEEe-ccCCceEEEEEeccc-----------
Confidence 999999999999999999999999999986 333 34454 33445555 679999999999887
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
..+..+..+...+ ...+.+.|.-..|+++. ++.+++|.
T Consensus 260 -~~~sk~~~~~~v~--------v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 260 -TQISKLSVVSTVI--------VTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred -eeeeeeccCCcee--------EEeeecccCccceeEec-CCceecee
Confidence 7777777766542 22466666665555544 34566775
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=5.6e-24 Score=228.08 Aligned_cols=259 Identities=16% Similarity=0.258 Sum_probs=199.7
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC------------C-------ceEEeccCCCCeEEEEEeeCCC
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT------------A-------LRSLLRGHTQRVTDMAFFAEDV 270 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~------------~-------~~~~l~~H~~~V~slaf~s~dg 270 (1395)
..+..|...+.+-+|++||.++|+|+.|..|+|+|++. + .+++|..|.+.|+++.| .|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F-HPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF-HPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee-cchh
Confidence 45678999999999999999999999999999999872 1 36788999999999999 7888
Q ss_pred CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccc
Q 039790 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGE 350 (1395)
Q Consensus 271 ~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~ 350 (1395)
.+|++|+.|++|++||+....... .++++.+ ...+.++.|||.|.+++++.....+..+|.....
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKr-----------A~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q--- 249 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKR-----------AFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ--- 249 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHH-----------HHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEecccee---
Confidence 999999999999999998643111 1222222 3457799999999877766666666666654321
Q ss_pred cccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEe
Q 039790 351 RFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFL 429 (1395)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs 429 (1395)
+|-.. .--.+|.+.|+++.+++.| ++.++||.||.|||||--+++|+.+|. .|.+..|.+..|.
T Consensus 250 cfvsa--------------nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 250 CFVSA--------------NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred Eeeec--------------CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence 11100 0123699999999999998 899999999999999999999999986 7888899999999
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-C
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-K 508 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~ 508 (1395)
.+|+|++++| .|..|++|.+.++ +++.++.+.+..... .+-. -..|.....+++.-. .
T Consensus 315 ----kn~kyiLsSG-~DS~vkLWEi~t~------------R~l~~YtGAg~tgrq---~~rt-qAvFNhtEdyVl~pDEa 373 (430)
T KOG0640|consen 315 ----KNGKYILSSG-KDSTVKLWEISTG------------RMLKEYTGAGTTGRQ---KHRT-QAVFNHTEDYVLFPDEA 373 (430)
T ss_pred ----cCCeEEeecC-CcceeeeeeecCC------------ceEEEEecCCcccch---hhhh-hhhhcCccceEEccccc
Confidence 9999999998 9999999999999 999999877432111 1111 234444555554433 5
Q ss_pred CCeEEEEEcCCC
Q 039790 509 KNAIYAIHMDYG 520 (1395)
Q Consensus 509 Dg~I~iWdl~~g 520 (1395)
.+.+.-||-+++
T Consensus 374 s~slcsWdaRta 385 (430)
T KOG0640|consen 374 SNSLCSWDARTA 385 (430)
T ss_pred cCceeeccccch
Confidence 677888987764
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=2.2e-23 Score=255.65 Aligned_cols=278 Identities=21% Similarity=0.287 Sum_probs=213.4
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEE-eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSL-LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~-l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
|...+.|..|. +.++++|+.|++|++||..++. +.. +.||.+.|++++| ...+.+|++|+.|.+++|||+.+|.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~-~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAF-PSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEE-ecCCCEEEEEecCCcEEeEecCCCc-
Confidence 56778888887 6789999999999999999984 444 9999999999999 6578999999999999999999998
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
|...+.+|...+.++...+ .++++|+.+..+++|....+.. +.++
T Consensus 283 -------------C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~-------------------l~l~ 327 (537)
T KOG0274|consen 283 -------------CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC-------------------LNLL 327 (537)
T ss_pred -------------EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcce-------------------EEEe
Confidence 6777778888777776544 3455555555444444343322 6778
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+|.+.|+++.++ + .++++|+.||+|++||+.+++|++++.+|.+ +|+++.+. .. .++++++ .|++|++|
T Consensus 328 ~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~----~~-~~~~Sgs-~D~~IkvW 397 (537)
T KOG0274|consen 328 RGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVD----SE-NRLLSGS-LDTTIKVW 397 (537)
T ss_pred ccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEec----Cc-ceEEeee-eccceEee
Confidence 8899999999998 4 7999999999999999999999999999998 99999885 32 7777755 99999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeee
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIA 532 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~ 532 (1395)
|+++. ++|+.+|.+|...+ ..+...+.+|++++.|+.|++||...+. +++.+.
T Consensus 398 dl~~~-----------~~c~~tl~~h~~~v-----------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~-----~~~~~~ 450 (537)
T KOG0274|consen 398 DLRTK-----------RKCIHTLQGHTSLV-----------SSLLLRDNFLVSSSADGTIKLWDAEEGE-----CLRTLE 450 (537)
T ss_pred cCCch-----------hhhhhhhcCCcccc-----------cccccccceeEeccccccEEEeecccCc-----eeeeec
Confidence 99875 17999999998764 2234568999999999999999998865 222222
Q ss_pred eeeccccEEEEecCCCCc-CcCCCCeEEEEEcCCCcee
Q 039790 533 EFTVTMPILSLTGTTTDA-SPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 533 ~f~~~~~ils~~~~~~d~-~~s~dg~V~lWdv~t~~i~ 569 (1395)
.- ....+.++....-.. +...|+.+++||+.++...
T Consensus 451 ~~-~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 451 GR-HVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cC-CcccEEEeecCcceEEEEecCCeeEEEecccCchh
Confidence 21 113333333331011 1356788888888887553
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=2.3e-24 Score=244.29 Aligned_cols=275 Identities=10% Similarity=0.028 Sum_probs=216.2
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~Las 233 (1395)
+|..+.+|++++.|+.|++|+++. ...++++|.+|...|..++|+.+|..+.+
T Consensus 223 fp~~~hLlLS~gmD~~vklW~vy~---------------------------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 223 FPKKGHLLLSGGMDGLVKLWNVYD---------------------------DRRCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred ccceeeEEEecCCCceEEEEEEec---------------------------CcceehhhhcchhhhhhhhccccCCeeee
Confidence 344568999999999999999541 23678899999999999999999999999
Q ss_pred EEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCC-CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDV-HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg-~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
++.|+.|++||+++|....-......++|+.| .+++ +.|++|+.|+.|+.||+++++. ++-+..
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf-~pd~~n~fl~G~sd~ki~~wDiRs~kv--------------vqeYd~ 340 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDKVPTCVKF-HPDNQNIFLVGGSDKKIRQWDIRSGKV--------------VQEYDR 340 (503)
T ss_pred eecceeeeeeccccceEEEEEecCCCceeeec-CCCCCcEEEEecCCCcEEEEeccchHH--------------HHHHHh
Confidence 99999999999999965433334557899999 5555 9999999999999999999983 334456
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
|-+.+..+.|-+.+.+++.+..++.+++|+....... ......+-...-||..+|.+ .++
T Consensus 341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i-------------------k~i~~~~~hsmP~~~~~P~~-~~~ 400 (503)
T KOG0282|consen 341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI-------------------KNIADPEMHTMPCLTLHPNG-KWF 400 (503)
T ss_pred hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc-------------------hhhcchhhccCcceecCCCC-Cee
Confidence 6777889999999998888888887777765332110 01111233346789999998 899
Q ss_pred EEEeCCCcEEEEeCCCC---ceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 393 ASASLDGTVKIWDDRKS---TPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg---~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+.-+.|..|.||.+... .....|+||.. ..-..|.|| |||++|++| +.||.+.+||.++.
T Consensus 401 ~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS----pDG~~l~SG-dsdG~v~~wdwkt~----------- 464 (503)
T KOG0282|consen 401 AAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS----PDGRTLCSG-DSDGKVNFWDWKTT----------- 464 (503)
T ss_pred hhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc----CCCCeEEee-cCCccEEEeechhh-----------
Confidence 99999999999986543 34456778853 155778999 999999995 59999999999988
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCCCeEEEEE
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWd 516 (1395)
+.+..++.|..... .+.|.| ....+++++.||.|++|+
T Consensus 465 -kl~~~lkah~~~ci---------~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 -KLVSKLKAHDQPCI---------GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -hhhhccccCCcceE---------EEEecCCCcceeEecccCceeEecC
Confidence 88999999865533 255544 567899999999999996
No 64
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.7e-23 Score=252.31 Aligned_cols=244 Identities=14% Similarity=0.264 Sum_probs=188.7
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC--------------------------------C-------------
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--------------------------------A------------- 248 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~--------------------------------~------------- 248 (1395)
.|.+.|+++.||+||+|||+||.||.||||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999997654 0
Q ss_pred ----------------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 249 ----------------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 249 ----------------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
.+..|.||.+.|.+|.| +. .++|++++.|.|||+|++.... |+.++ .
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW-SK-n~fLLSSSMDKTVRLWh~~~~~--------------CL~~F-~ 407 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW-SK-NNFLLSSSMDKTVRLWHPGRKE--------------CLKVF-S 407 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccc-cc-CCeeEeccccccEEeecCCCcc--------------eeeEE-e
Confidence 12346799999999999 55 4689999999999999999877 45554 4
Q ss_pred CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
|.+.|+||+|+|.+..+|++|+ |+++.+|.+.. .+ +.....-.+-|++++|.||| .+
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d-~~--------------------Vv~W~Dl~~lITAvcy~PdG-k~ 465 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD-KK--------------------VVDWNDLRDLITAVCYSPDG-KG 465 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCc-Ce--------------------eEeehhhhhhheeEEeccCC-ce
Confidence 6789999999997776665555 55555555432 21 22222334789999999998 89
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEec--CC-----CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCC
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVLR--PY-----DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPS 464 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl~--~h-----~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~ 464 (1395)
.+.|+.+|.+++|+.+..+....+. .| .+..|+.+.|.|.. ++ +.|+| . .|..|||||.+..
T Consensus 466 avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~-~~-~vLVT-S-nDSrIRI~d~~~~------- 534 (712)
T KOG0283|consen 466 AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD-PD-EVLVT-S-NDSRIRIYDGRDK------- 534 (712)
T ss_pred EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC-CC-eEEEe-c-CCCceEEEeccch-------
Confidence 9999999999999998877665443 11 12279999998321 22 35555 4 8999999999877
Q ss_pred CcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 465 DIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 465 ~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.++..|++....-.. ....|+.||++|++++.|..||||++..
T Consensus 535 -----~lv~KfKG~~n~~SQ-------~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 535 -----DLVHKFKGFRNTSSQ-------ISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -----hhhhhhcccccCCcc-------eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 788888876644322 2478899999999999999999999865
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=1.3e-23 Score=219.92 Aligned_cols=285 Identities=16% Similarity=0.218 Sum_probs=227.3
Q ss_pred eeeeCCCCCEEEEEEec---CCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 210 TKYISDPGLVLGRQIAV---NRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Sp---dg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.+..+|...|..++||+ +|-+|+++++||.-.+-+-++|. +.+|.||.+.|++.+. ..+..+.++++.|-+-+||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l-~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATL-NKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeec-Cchhhhhhhhcccchhhhh
Confidence 35678999999999986 89999999999998888888885 8899999999999999 7777889999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|..+|..+..+ .|...|..++|+.+..+++.+|.++-+.+++..+...
T Consensus 87 ~a~tgdelhsf---------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A----------------- 134 (334)
T KOG0278|consen 87 DAVTGDELHSF---------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----------------- 134 (334)
T ss_pred hhhhhhhhhhh---------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC-----------------
Confidence 99999844332 4567788999999999888888777776666544322
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
+...+.+|.+.|..+-|+..+ +.|++.+.|++||+||.++|..++++.... .|+++.++ ++|++|.++ .
T Consensus 135 --pp~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs----~dG~ilTia--~ 203 (334)
T KOG0278|consen 135 --PPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVS----QDGRILTIA--Y 203 (334)
T ss_pred --CchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeec----cCCCEEEEe--c
Confidence 256678999999999999987 789999999999999999999999998654 79999999 999988773 5
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
-+.|++||..+. ..++.++..... ....++|+..++++|+.|..+|.||+.+|.....
T Consensus 204 gssV~Fwdaksf------------~~lKs~k~P~nV----------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 204 GSSVKFWDAKSF------------GLLKSYKMPCNV----------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred CceeEEeccccc------------cceeeccCcccc----------ccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence 789999999887 777777765432 2578899999999999999999999999864221
Q ss_pred cceeeeeeeeccccEEEEecCCC-CcC--cCCCCeEEEEEcCCC
Q 039790 526 TRMDYIAEFTVTMPILSLTGTTT-DAS--PDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~ils~~~~~~-d~~--~s~dg~V~lWdv~t~ 566 (1395)
+..... .|+.++.++.. ..+ .+.||+|+||.+..+
T Consensus 262 ----~nkgh~--gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 262 ----YNKGHF--GPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ----cccCCC--CceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 111122 34443333330 223 467889999987776
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.5e-23 Score=241.16 Aligned_cols=241 Identities=18% Similarity=0.285 Sum_probs=207.9
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEecc-CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRG-HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~-H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
...|+++.|+++|.+||+|..+|.|.|||.... ....+.+ |..+|-+++| ++..+.+|+.||.|.+||++....
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW---~~~~lssGsr~~~I~~~dvR~~~~- 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW---NSSVLSSGSRDGKILNHDVRISQH- 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec---cCceEEEecCCCcEEEEEEecchh-
Confidence 789999999999999999999999999999886 4667777 9999999999 478999999999999999998761
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
.+....+|...|+.+.|++++.++..+|.|+.+.+||..... +...+.
T Consensus 293 ------------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~--------------------p~~~~~ 340 (484)
T KOG0305|consen 293 ------------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE--------------------PKFTFT 340 (484)
T ss_pred ------------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc--------------------ccEEEe
Confidence 122366788999999999999988888888888888763221 256777
Q ss_pred ccCCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC-cEEEEEecCCCeEE
Q 039790 374 KHDGEITELSMCQWLTTRLASAS--LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH-IVLITGGPLNRELK 450 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs--~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg-~~L~s~Gs~Dg~I~ 450 (1395)
.|...|..++|+|....+||+|+ .|++|++||..+|..+..+.... .|.+|.|+ +.. .++.+-|..++.|.
T Consensus 341 ~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs--QVcsL~Ws----k~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 341 EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS--QVCSLIWS----KKYKELLSTHGYSENQIT 414 (484)
T ss_pred ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC--ceeeEEEc----CCCCEEEEecCCCCCcEE
Confidence 89999999999999888999976 69999999999999999987654 69999999 665 45556676788999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
||++.+. +.+..+.+|...+.. ++++|||..|++|+.|.++++|++-.
T Consensus 415 lw~~ps~------------~~~~~l~gH~~RVl~---------la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 415 LWKYPSM------------KLVAELLGHTSRVLY---------LALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEecccc------------ceeeeecCCcceeEE---------EEECCCCCEEEEecccCcEEeccccC
Confidence 9999887 889999999987654 89999999999999999999999865
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=1.9e-22 Score=225.47 Aligned_cols=251 Identities=19% Similarity=0.240 Sum_probs=211.6
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..|+||...|+.+.|+++...+++++.|..||||..... +....+.|.++|+.+.. .+.|.||++++.||+..+.
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~-h~tgeYllsAs~d~~w~Fs 330 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL-HPTGEYLLSASNDGTWAFS 330 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee-ccCCcEEEEecCCceEEEE
Confidence 556789999999999999999999999999999999998875 57788899999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEec--CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILA--DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~--~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
|+++|. ++.... ..+..+++..||||| .||..|..++++.+|+......
T Consensus 331 d~~~g~--------------~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~-------------- 381 (506)
T KOG0289|consen 331 DISSGS--------------QLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTN-------------- 381 (506)
T ss_pred EccCCc--------------EEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccc--------------
Confidence 999987 222222 345668899999999 5777777777777776554332
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+..|.+|.+.|..++|+.+| .|||+++.|+.|++||+|..+.+.+|.......|.++.|. ..|.+|+++|
T Consensus 382 -----~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD----~SGt~L~~~g 451 (506)
T KOG0289|consen 382 -----VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD----QSGTYLGIAG 451 (506)
T ss_pred -----cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc----CCCCeEEeec
Confidence 56788999999999999998 9999999999999999999998888886665579999998 8999999987
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.|=+|++++-.+ +.|.++..+..|.+... .+.|.....++++++.|..++++.+
T Consensus 452 -~~l~Vy~~~k~~----------k~W~~~~~~~~~sg~st---------~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 -SDLQVYICKKKT----------KSWTEIKELADHSGLST---------GVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred -ceeEEEEEeccc----------ccceeeehhhhcccccc---------eeeecccceEEeeccchhheEEeec
Confidence 665566555433 68899999988886543 4899999999999999999888764
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=231.02 Aligned_cols=262 Identities=14% Similarity=0.205 Sum_probs=214.8
Q ss_pred CCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
..+.|..++|+|... -+|+.+. -.+.||+..+.. +.++......|++++| ..||.+|+.|+..|.|+|||+.+..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~f-R~DG~LlaaGD~sG~V~vfD~k~r~- 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDF-RSDGRLLAAGDESGHVKVFDMKSRV- 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEe-ecCCeEEEccCCcCcEEEeccccHH-
Confidence 347899999999543 3444443 478999988764 5557777889999999 8899999999999999999976643
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
.++.+..|...+..+.|+|.++.+++.|+|+.+++||+...... ...+
T Consensus 102 -------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-------------------~~~l 149 (487)
T KOG0310|consen 102 -------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-------------------QAEL 149 (487)
T ss_pred -------------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-------------------EEEe
Confidence 34556778899999999999999999999999999998664421 3467
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
.+|++.|.|.+|+|-.+.+++|||+||+||+||++.. ..+.++. |.. +|.+|.|. |.|..++++| ...|+|
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~-pVe~vl~l----psgs~iasAg--Gn~vkV 221 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGC-PVESVLAL----PSGSLIASAG--GNSVKV 221 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCC-ceeeEEEc----CCCCEEEEcC--CCeEEE
Confidence 7899999999999987789999999999999999987 6777775 654 99999999 9999999977 578999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeee
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYI 531 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i 531 (1395)
||+.+| ++.+..+..|...+++ +.+..++..|++|+-|+.|++||+. .++.+
T Consensus 222 WDl~~G-----------~qll~~~~~H~KtVTc---------L~l~s~~~rLlS~sLD~~VKVfd~t--------~~Kvv 273 (487)
T KOG0310|consen 222 WDLTTG-----------GQLLTSMFNHNKTVTC---------LRLASDSTRLLSGSLDRHVKVFDTT--------NYKVV 273 (487)
T ss_pred EEecCC-----------ceehhhhhcccceEEE---------EEeecCCceEeecccccceEEEEcc--------ceEEE
Confidence 999976 1445555557776654 8888899999999999999999954 35678
Q ss_pred eeeeccccEEEEecCC
Q 039790 532 AEFTVTMPILSLTGTT 547 (1395)
Q Consensus 532 ~~f~~~~~ils~~~~~ 547 (1395)
..+....|++++....
T Consensus 274 ~s~~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 274 HSWKYPGPVLSIAVSP 289 (487)
T ss_pred EeeecccceeeEEecC
Confidence 8888888998887765
No 69
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.8e-23 Score=238.55 Aligned_cols=287 Identities=18% Similarity=0.175 Sum_probs=215.6
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL 237 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D 237 (1395)
..+|.|||.||.|++|+... +.. + .....+..+..|.++|.++....+|+.|++++.|
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~-------------d~~-----~----~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD 94 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQ-------------DSN-----E----PSTPYIASMEHHSDWVNDIILCGNGKTLISASSD 94 (735)
T ss_pred CceEEecCCCceEEEecccc-------------ccC-----C----cccchhhhhhhhHhHHhhHHhhcCCCceEEecCC
Confidence 36799999999999999331 000 0 0112466778899999999999999999999999
Q ss_pred CeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC--CCCCcccccceEEEEEEecC
Q 039790 238 GNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD--EEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 238 G~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~--~~~~~~~~~~~i~~l~~~~~ 312 (1395)
-+|++|+...+ +..+++.|++.|.|+++...+..++||||.|+.|++||+.++.. ...+. .+..-.+..+
T Consensus 95 tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-----~~t~~sl~sG 169 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-----NVTVNSLGSG 169 (735)
T ss_pred ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc-----ccccccCCCC
Confidence 99999998865 68899999999999999667888999999999999999998842 11111 1111122226
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
+...+++++.++.+. ++++|...+.+++|+-+..+. +..+.||++.|.++..+.|| +.+
T Consensus 170 ~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~k-------------------imkLrGHTdNVr~ll~~dDG-t~~ 228 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKK-------------------IMKLRGHTDNVRVLLVNDDG-TRL 228 (735)
T ss_pred CccceeeeecCCcce-EEEecCcccceEEeccccccc-------------------eeeeeccccceEEEEEcCCC-CeE
Confidence 778899999999884 555555555555555343321 55667999999999999999 899
Q ss_pred EEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEE
Q 039790 393 ASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l 472 (1395)
+++|.||+||+||+...+|+.++..|+. .|+++..+ |+-.++.+|| .||.|..=|+++.. ++.
T Consensus 229 ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~----~sf~~vYsG~-rd~~i~~Tdl~n~~-----------~~t 291 (735)
T KOG0308|consen 229 LSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSS----PSFTHVYSGG-RDGNIYRTDLRNPA-----------KST 291 (735)
T ss_pred eecCCCceEEeeeccccceeeeEEeccC-ceEEEeeC----CCcceEEecC-CCCcEEecccCCch-----------hhe
Confidence 9999999999999999999999999998 89999998 8888999977 99999999998741 333
Q ss_pred EEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 473 QTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 473 ~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..++.. ..+. .+.+.....-+.+++.|+.|+-|...-
T Consensus 292 lick~d-aPv~---------~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 292 LICKED-APVL---------KLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred EeecCC-Cchh---------hhhhccccCCceeeeccccceecCCcc
Confidence 333221 1111 133332222235667889999997653
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=229.86 Aligned_cols=291 Identities=15% Similarity=0.171 Sum_probs=218.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+++..+++||.|-+|++||+. | .+...+ ..+.+. ......|..++|++.|..|
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~--------g----Mdas~~---------~fr~l~--P~E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQ--------G----MDASMR---------SFRQLQ--PCETHQINSLQYSVTGDQI 229 (641)
T ss_pred eeecCCCceeeeccccceEEEEecc--------c----ccccch---------hhhccC--cccccccceeeecCCCCeE
Confidence 6677888999999999999999933 1 011110 001111 1344678899999999999
Q ss_pred EEEEcCCeEEEEECCCCce-------------EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 232 CYGLKLGNIRILNIITALR-------------SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~-------------~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++.+....++|+|.+...+ ..-+||...++|.+|++.+...|+||+.||++||||+...+.
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~------ 303 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS------ 303 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh------
Confidence 9988889999999876422 244789999999999777888999999999999999987651
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC-
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG- 377 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~- 377 (1395)
..-+..-+..+.....++.|.|++++..|.+++.+|.|.+|+....... ..+.+-..|..
T Consensus 304 --q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-----------------p~~~vk~AH~~g 364 (641)
T KOG0772|consen 304 --QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-----------------PVMKVKDAHLPG 364 (641)
T ss_pred --heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-----------------cceEeeeccCCC
Confidence 1111122223345567789999999999888888888888876332211 11455667887
Q ss_pred -CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEec-----CCCeE
Q 039790 378 -EITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGP-----LNREL 449 (1395)
Q Consensus 378 -~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs-----~Dg~I 449 (1395)
.|+||+||+|| ++|++-+.|+++++||++.. +++.++.+-.. ..-+.++|| |+.++|+++.+ ..|++
T Consensus 365 ~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS----Pd~kli~TGtS~~~~~~~g~L 439 (641)
T KOG0772|consen 365 QDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS----PDDKLILTGTSAPNGMTAGTL 439 (641)
T ss_pred CceeEEEecccc-chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC----CCceEEEecccccCCCCCceE
Confidence 89999999999 89999999999999999985 67776654322 256889999 99999998643 45789
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.+||..+. ..++++......+. .+.|+|.=+.|++|+.||++++|-
T Consensus 440 ~f~d~~t~------------d~v~ki~i~~aSvv---------~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 440 FFFDRMTL------------DTVYKIDISTASVV---------RCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEeccce------------eeEEEecCCCceEE---------EEeecchhhheeeecCCCceEEEE
Confidence 99999887 77777776644332 477888888888999999999985
No 71
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=2.8e-21 Score=236.99 Aligned_cols=246 Identities=15% Similarity=0.187 Sum_probs=182.0
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCEEEEEE
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNYICYGL 235 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs 235 (1395)
++..+++++.+..+..|+.. .| ..+ +.....|... .....+.+|.+.|++++|+| ++++|++|+
T Consensus 31 d~~~~~~~n~~~~a~~w~~~--gg------~~v--~~~~~~G~~~-----~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS 95 (493)
T PTZ00421 31 DCSNTIACNDRFIAVPWQQL--GS------TAV--LKHTDYGKLA-----SNPPILLGQEGPIIDVAFNPFDPQKLFTAS 95 (493)
T ss_pred CCCCcEeECCceEEEEEecC--Cc------eEE--eeccccccCC-----CCCceEeCCCCCEEEEEEcCCCCCEEEEEe
Confidence 33556777777777777732 11 111 1112222211 11234679999999999999 899999999
Q ss_pred cCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 236 KLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 236 ~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
.||+|+|||+.++ .+..+.+|...|.+|+| +++ +++|++|+.|++|+|||+.++. .
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f-~P~~~~iLaSgs~DgtVrIWDl~tg~--------------~ 160 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF-HPSAMNVLASAGADMVVNVWDVERGK--------------A 160 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEe-CcCCCCEEEEEeCCCEEEEEECCCCe--------------E
Confidence 9999999999764 35678999999999999 555 5799999999999999999876 3
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC-eEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE-ITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~-V~slafs 385 (1395)
+..+..|...+.+++|++++..+++++.++.+.+||.... .. +..+.+|.+. +..+.|.
T Consensus 161 ~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~-------------------v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 161 VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TI-------------------VSSVEAHASAKSQRCLWA 220 (493)
T ss_pred EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cE-------------------EEEEecCCCCcceEEEEc
Confidence 4555677888999999999987777777788877776432 11 4556678764 4567888
Q ss_pred cCCCcEEEEEe----CCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 386 QWLTTRLASAS----LDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 386 pdg~~~LaSgs----~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+++ .+|++++ .|+.|+|||+++. .++..+..+....+....|+ +++.+|+++|..|+.|++||+.++
T Consensus 221 ~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d----~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 221 KRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFD----EDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEc----CCCCEEEEEEeCCCeEEEEEeeCC
Confidence 887 4565544 4799999999976 45555554443356667788 899999988866999999999987
No 72
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.5e-22 Score=215.50 Aligned_cols=324 Identities=13% Similarity=0.134 Sum_probs=228.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..++.|.||.+.|+.++.......+.+++.|.+.+||.+++| |+..+.||.+.|++|+| ++.+.++++++.|++-.||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikf-h~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKF-HNSGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEe-ccccceEEEccCCcchHHH
Confidence 456778899999999988887789999999999999999998 78999999999999999 7889999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
...-.-..... .. ..+|.+.- .+.-+ +...-...+ ..+..-...
T Consensus 218 ~~av~~~vP~~---~a--------~~~hSsEe-E~e~s-De~~~d~d~-----------------------~~~sD~~ti 261 (481)
T KOG0300|consen 218 KAAVNWEVPSN---NA--------PSDHSSEE-EEEHS-DEHNRDTDS-----------------------SEKSDGHTI 261 (481)
T ss_pred HHhhcCcCCCC---CC--------CCCCCchh-hhhcc-ccccccccc-----------------------ccccCCcee
Confidence 84322100000 00 00000000 00000 000000000 000000112
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
..++..+.+|.+.|.+..|-..| ..++++++|.+..+||+.+|.++..+.||+. ..+.++-. |..+++++++ .
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELtHcstH----ptQrLVvTsS-r 334 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVETGEVVNILTGHDS-ELTHCSTH----PTQRLVVTSS-R 334 (481)
T ss_pred eeeeeeeeccccceEehhhhcCc-ceeeeeeccccceeeeeccCceeccccCcch-hccccccC----CcceEEEEec-c
Confidence 23367788999999999998877 8999999999999999999999999999997 88888775 8888888865 9
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
|.++++||++.. ...+..|.+|...+.. +.|.. +..+++|++|.+|++||+..-..
T Consensus 335 DtTFRLWDFRea-----------I~sV~VFQGHtdtVTS---------~vF~~-dd~vVSgSDDrTvKvWdLrNMRs--- 390 (481)
T KOG0300|consen 335 DTTFRLWDFREA-----------IQSVAVFQGHTDTVTS---------VVFNT-DDRVVSGSDDRTVKVWDLRNMRS--- 390 (481)
T ss_pred CceeEeccchhh-----------cceeeeecccccceeE---------EEEec-CCceeecCCCceEEEeeeccccC---
Confidence 999999999732 4677889999987654 66655 45678999999999999986432
Q ss_pred cceeeeeeeeccccE---EEEecCCCCcCcCCCCeEEEEEcCCCce-------eeecccceEEecCCCCC----eecccC
Q 039790 526 TRMDYIAEFTVTMPI---LSLTGTTTDASPDGEHIVQIYCVQTQAI-------QQYALDLSQCLPPPLEN----AELEKT 591 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~i---ls~~~~~~d~~~s~dg~V~lWdv~t~~i-------~~~~~~~~~cl~~s~d~----l~~~~s 591 (1395)
.+.......++ -...|...-.++-+.+.|+|||+....+ .++|.+.+.|.++..+. +...+.
T Consensus 391 ----plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGF 466 (481)
T KOG0300|consen 391 ----PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGF 466 (481)
T ss_pred ----cceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccc
Confidence 22222222221 1112222122345678899999998765 46788889999977664 556666
Q ss_pred CCceEEEeecCC
Q 039790 592 DSNATRAFDVAN 603 (1395)
Q Consensus 592 d~~v~~iWD~~t 603 (1395)
|..+. -|.+.+
T Consensus 467 DR~v~-gW~in~ 477 (481)
T KOG0300|consen 467 DRMVA-GWKINT 477 (481)
T ss_pred cceee-eeEecc
Confidence 76665 787754
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=1.8e-22 Score=248.83 Aligned_cols=301 Identities=18% Similarity=0.183 Sum_probs=225.3
Q ss_pred ccCCCCCCeEEeec--CCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC
Q 039790 152 PTLPPPSDSTVVIP--SAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s--~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~ 229 (1395)
+...|++..++||+ .|+.+++|+... +..+...++.. -...+.....|.+.|.|+.|++||.
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~-----vl~~~~~~~~~-----------l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDP-----VLDEKEEKNEN-----------LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred EEecCCceeEecCCccccccceeecccc-----ccchhhhhhcc-----------cchhheeeccccCceeEEEECCCCC
Confidence 55567778899999 899999998321 11111111111 1255677888999999999999999
Q ss_pred EEEEEEcCCeEEEEECCC----------C---------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 230 YICYGLKLGNIRILNIIT----------A---------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~----------~---------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
|||+|+.|+.|.||+... | ++..+++|...|.+++| ++++.+|++++.|++|.|||..+.
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W-sp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW-SPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc-CCCccEEEEecccceEEEEccccc
Confidence 999999999999999872 1 45689999999999999 899999999999999999999987
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
+ .+..+.+|...|..+.|.|-|+++.+-+.|+.+.+|.....+- . +.+....
T Consensus 162 ~--------------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i------~--------k~It~pf 213 (942)
T KOG0973|consen 162 E--------------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI------E--------KSITKPF 213 (942)
T ss_pred e--------------eeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee------e--------Eeeccch
Confidence 5 6788899999999999999998777777777777776443211 1 0111000
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC--CCC--------
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASL----DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH--PQH-------- 436 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~----Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~--pdg-------- 436 (1395)
.-..-...+..+.||||| .+|++... -.++.|.+-.+++.-..|-||.+ ++.++.|+|..- +.+
T Consensus 214 ~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~ 291 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPN 291 (942)
T ss_pred hhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCC
Confidence 001233467899999999 88888643 34689999888888889999998 999999995421 111
Q ss_pred -cE-EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe-ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 437 -IV-LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE-LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 437 -~~-L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
.| ++++|+.|++|-||..... +.+.... .-...+. -++|++||..|++++.||+|+
T Consensus 292 ~~y~i~AvgSqDrSlSVW~T~~~------------RPl~vi~~lf~~SI~---------DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 292 CYYCIAAVGSQDRSLSVWNTALP------------RPLFVIHNLFNKSIV---------DMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred cceEEEEEecCCccEEEEecCCC------------CchhhhhhhhcCcee---------eeeEcCCCCeEEEEecCCeEE
Confidence 22 6777889999999998765 3332221 1112221 399999999999999999999
Q ss_pred EEEcCCC
Q 039790 514 AIHMDYG 520 (1395)
Q Consensus 514 iWdl~~g 520 (1395)
+++++..
T Consensus 351 ~i~Fee~ 357 (942)
T KOG0973|consen 351 LIHFEEK 357 (942)
T ss_pred EEEcchH
Confidence 9999764
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=2.9e-22 Score=212.01 Aligned_cols=269 Identities=16% Similarity=0.113 Sum_probs=205.0
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC-----CC
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV-----DG 280 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-----Dg 280 (1395)
+..+-+|.||.+.|+|+.+..+.++|++|+.|.++++||+.+|+....-.....|..+.| +.+|++++.+.. .+
T Consensus 42 GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F-~~~gn~~l~~tD~~mg~~~ 120 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDF-SFGGNLILASTDKQMGYTC 120 (327)
T ss_pred CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEee-ccCCcEEEEEehhhcCcce
Confidence 356788999999999999999999999999999999999999975545556778999999 899998887754 46
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.|.++|++....... .. .++..+..++..++.+.|.|.+..|+++..++.|.+||.......
T Consensus 121 ~v~~fdi~~~~~~~~----s~---ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~----------- 182 (327)
T KOG0643|consen 121 FVSVFDIRDDSSDID----SE---EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL----------- 182 (327)
T ss_pred EEEEEEccCChhhhc----cc---CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-----------
Confidence 799999986431100 01 123444556688999999999999999999999999987653221
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
+.....|...|+++.|++|. .+++++|.|.+-++||+++-.+++++.... +|++.+++ |...+++
T Consensus 183 --------v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~te~--PvN~aais----P~~d~Vi 247 (327)
T KOG0643|consen 183 --------VDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTTER--PVNTAAIS----PLLDHVI 247 (327)
T ss_pred --------eechhhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeeecc--cccceecc----cccceEE
Confidence 33345688999999999998 899999999999999999999999998664 89999999 8888888
Q ss_pred EEecCCCe-EEEEECCCCCCCCC--CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 441 TGGPLNRE-LKIWASAEEEGWLL--PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 441 s~Gs~Dg~-I~IWDl~tg~~~~~--~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.+|..+-. |.-=+.+.+ ... ..+.--.+.+..+++|-+++.. ++|+|+|...++|+.||.|++.++
T Consensus 248 lgGGqeA~dVTTT~~r~G--KFEArFyh~i~eEEigrvkGHFGPINs---------vAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 248 LGGGQEAMDVTTTSTRAG--KFEARFYHLIFEEEIGRVKGHFGPINS---------VAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred ecCCceeeeeeeeccccc--chhhhHHHHHHHHHhccccccccCcce---------eEECCCCcccccCCCCceEEEEEe
Confidence 87744321 111111111 000 0000011335567788777654 999999999999999999999988
Q ss_pred CC
Q 039790 518 DY 519 (1395)
Q Consensus 518 ~~ 519 (1395)
+.
T Consensus 317 d~ 318 (327)
T KOG0643|consen 317 DS 318 (327)
T ss_pred cc
Confidence 65
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.6e-23 Score=216.75 Aligned_cols=232 Identities=18% Similarity=0.235 Sum_probs=192.7
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCEEEEEEcC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNYICYGLKL 237 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs~D 237 (1395)
..+++++.||.+|+||.- ....+|..|+.|...|.++.|+. ++..+++++.|
T Consensus 74 ~~~~~a~GDGSLrl~d~~---------------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLT---------------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred ceEEEEecCceEEEeccC---------------------------CCCcchhHHHhhhhheEEeccccccceeEEeeccC
Confidence 677788888888888833 12368899999999999999998 56678888999
Q ss_pred CeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 238 GNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 238 G~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
|+|++|+...+ .+.+|.||...|+..+|++...++|++++.||++++||++... + ...+..|...
T Consensus 127 ~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g----------k----~~~i~ah~~E 192 (311)
T KOG0277|consen 127 GTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG----------K----FMSIEAHNSE 192 (311)
T ss_pred CceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC----------c----eeEEEeccce
Confidence 99999999886 5889999999999999988889999999999999999998643 1 1225567788
Q ss_pred ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe
Q 039790 317 HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS 396 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs 396 (1395)
+.++.|+.....++++|..++.++.|+.+..+ .++..+.+|.-.|..++|||....+|++++
T Consensus 193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r------------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR------------------TPLFELNGHGLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred eEeecccccCCcEEEecCCCceEEEEehhhcc------------------ccceeecCCceEEEEEecCcchhhHhhhcc
Confidence 99999999999998888877666665544322 236777899999999999999878999999
Q ss_pred CCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 397 LDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
.|-++||||...+ .++.+...|.. -|..+.|++ -+..+++++| +|+.++||+.
T Consensus 255 YDmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~---~~~~~vAs~g-WDe~l~Vw~p 308 (311)
T KOG0277|consen 255 YDMTVRIWDPERQDSAIETVDHHTE-FVCGLDWSL---FDPGQVASTG-WDELLYVWNP 308 (311)
T ss_pred ccceEEecccccchhhhhhhhccce-EEecccccc---ccCceeeecc-cccceeeecc
Confidence 9999999998854 66778888876 999999982 2567888888 9999999984
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=218.18 Aligned_cols=285 Identities=13% Similarity=0.132 Sum_probs=233.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..++|++.+|++|+.||.|.+|+.. . |++...+....-..|--+.+.|.|+.|+.|...|
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~--~------------------GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYT--T------------------GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhc--c------------------chhhhhhhhhhhcceeecccceEEEeecccHHHh
Confidence 5678889999999999999999932 1 2222222223334455678999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|+|+.||.|+||.+.+| |++.|. .|+..|+|+.| +.|+..+++++.|.+|||.-+++|+ +++-
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~F-SrD~SqiLS~sfD~tvRiHGlKSGK--------------~LKE 343 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSF-SRDNSQILSASFDQTVRIHGLKSGK--------------CLKE 343 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEE-ccCcchhhcccccceEEEeccccch--------------hHHH
Confidence 99999999999999998 566665 89999999999 9999999999999999999999999 4556
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
+.+|...|+...|.++|.+++.+++++.+.+|+.....-...| ...+.+..|+++-.-|.++
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf------------------k~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF------------------KPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc------------------cCCCCcccceeEEEcCCCC
Confidence 6789999999999999999999998888888876443211111 1124667899999989888
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCC--CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPY--DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h--~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
..++.|...++|.|-++ .|+.+++|..- .+....+.+.+ |.|.|+.+.| .|+.++.|.+.+|
T Consensus 406 eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lS----pkGewiYcig-ED~vlYCF~~~sG---------- 469 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILS----PKGEWIYCIG-EDGVLYCFSVLSG---------- 469 (508)
T ss_pred ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEec----CCCcEEEEEc-cCcEEEEEEeecC----------
Confidence 89999999999999996 47788887632 12256677788 9999999998 9999999999998
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+..+++..|...+.. +...|..++|++-+.||.+++|.
T Consensus 470 --~LE~tl~VhEkdvIG---------l~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 470 --KLERTLPVHEKDVIG---------LTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --ceeeeeecccccccc---------cccCcccchhhhhcccchhhhcC
Confidence 889999988876644 88889999999999999999995
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.1e-22 Score=241.61 Aligned_cols=273 Identities=13% Similarity=0.150 Sum_probs=201.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcC------CCCC---ee-----ee-------Cc-e----EEEEEeccCCC------
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKV------PKGR---HL-----IG-------NH-S----VYDIDVRLDGE------ 199 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~s------p~Gr---~L-----~G-------~~-~----v~~v~~~~~G~------ 199 (1395)
.-+++++.+||+||.|+.||+|.+.. ..+. .. .+ .. . .-.........
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 55677889999999999999999643 0000 00 00 00 0 00000000000
Q ss_pred ccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 200 VQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 200 ~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
....+..+++..|.||.+.|.++.||.++ +|++++.|.+||+|++..........|.+.|+||+|++-|.+||++|+.|
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred ccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccc
Confidence 11145668899999999999999999876 78999999999999999875444556999999999999999999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|.||||++...+ +....+-...|+.+||.|+|+..+++...|.++.++.....-...+.
T Consensus 432 ~KvRiWsI~d~~---------------Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~------ 490 (712)
T KOG0283|consen 432 GKVRLWSISDKK---------------VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH------ 490 (712)
T ss_pred cceEEeecCcCe---------------eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee------
Confidence 999999999765 33445556889999999999999999889888888775432110000
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~ 438 (1395)
-.....+.. .|. .|+.+.|.|.....++..+.|..|||||.++..++..|+|+.. ..-....|+ .||++
T Consensus 491 ----I~~~~~Kk~-~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs----~Dgk~ 560 (712)
T KOG0283|consen 491 ----IRLHNKKKK-QGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFS----SDGKH 560 (712)
T ss_pred ----EeeccCccc-cCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEc----cCCCE
Confidence 000001111 233 8999999987766677888999999999999999999997653 244677898 89999
Q ss_pred EEEEecCCCeEEEEECCCC
Q 039790 439 LITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|++++ .|..|+||++...
T Consensus 561 IVs~s-eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 561 IVSAS-EDSWVYIWKNDSF 578 (712)
T ss_pred EEEee-cCceEEEEeCCCC
Confidence 99977 9999999998654
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=9.3e-23 Score=237.44 Aligned_cols=244 Identities=16% Similarity=0.238 Sum_probs=201.5
Q ss_pred cCCCEEEEEEcCCeEEEEECCCC-------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 226 VNRNYICYGLKLGNIRILNIITA-------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~-------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++++||++||.||.|++|++..- ....+..|.++|+++.. ..+++.|+||+.|-+|++|+...+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL-~~~~~tlIS~SsDtTVK~W~~~~~~------- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL-CGNGKTLISASSDTTVKVWNAHKDN------- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHh-hcCCCceEEecCCceEEEeecccCc-------
Confidence 47789999999999999998652 36678899999999999 7888999999999999999998763
Q ss_pred cccceEEEEEEecCCCCCccEEEE-eCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCW-HPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~-sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
..|+.+++.|.++|.|+++ .++...++.+|.++.|++||.........-+.+ ...-.....|+..
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n---------~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN---------NVTVNSLGSGPKD 172 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc---------ccccccCCCCCcc
Confidence 1367888999999999999 555555556666888888887543210000000 0010112228999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.|++++.++.| ..|++|+..+.|++||.++++.+..++||.. -|..|..+ .||..+++++ .||+|++||+...
T Consensus 173 siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~----dDGt~~ls~s-SDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 173 SIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVN----DDGTRLLSAS-SDGTIRLWDLGQQ 245 (735)
T ss_pred ceeeeecCCcc-eEEEecCcccceEEeccccccceeeeecccc-ceEEEEEc----CCCCeEeecC-CCceEEeeecccc
Confidence 99999999998 8999999999999999999999999999998 99999999 9999999976 8999999999888
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+|+.++..|...+. .+..+++=..+.+|+.||.|+.-|+..
T Consensus 246 ------------rCl~T~~vH~e~VW---------aL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 246 ------------RCLATYIVHKEGVW---------ALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ------------ceeeeEEeccCceE---------EEeeCCCcceEEecCCCCcEEecccCC
Confidence 99999999987654 477788889999999999999999876
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=6.3e-22 Score=224.11 Aligned_cols=267 Identities=21% Similarity=0.270 Sum_probs=208.4
Q ss_pred eCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCC-----------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 213 ISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITA-----------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 213 ~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~-----------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
-.|.+.|+.+.+-| +..+||+++..+.|.|||...- .-..|.||...=++|+|+....-.|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 35889999999988 4567788889999999998753 12378999998999999666677899999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|++||+..... .+..+.....+.+|+..|..++|++....+|++..+++.+.+|+.+...
T Consensus 201 ~i~lwdi~~~~~-------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------------ 261 (422)
T KOG0264|consen 201 TICLWDINAESK-------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------------ 261 (422)
T ss_pred cEEEEecccccc-------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC------------
Confidence 999999997652 1345567788899999999999999988887777766655555544211
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCc-E
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHI-V 438 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~ 438 (1395)
.+..+...+|++.|+|++|+|.+..+|||||.|++|++||+|+- ++++++.+|.. .|.+|.|+ |+.. .
T Consensus 262 -----~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WS----Ph~etv 331 (422)
T KOG0264|consen 262 -----SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWS----PHNETV 331 (422)
T ss_pred -----CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeC----CCCCce
Confidence 12245667899999999999999899999999999999999985 78999999998 99999999 6655 4
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCc--ccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEeCCCeEEEE
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDI--ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANAKKNAIYAI 515 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~--~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~Dg~I~iW 515 (1395)
|+++| .|+.+.|||+..-.+...+.+. ....++..--+|...+.. +.|.|+-. .|++.+.||.+.||
T Consensus 332 LASSg-~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D---------fsWnp~ePW~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 332 LASSG-TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD---------FSWNPNEPWTIASVAEDNILQIW 401 (422)
T ss_pred eEecc-cCCcEEEEeccccccccChhhhccCCcceeEEecCccccccc---------ccCCCCCCeEEEEecCCceEEEe
Confidence 55555 9999999999876444433332 333455555666665533 66667665 56778899999999
Q ss_pred EcC
Q 039790 516 HMD 518 (1395)
Q Consensus 516 dl~ 518 (1395)
...
T Consensus 402 ~~s 404 (422)
T KOG0264|consen 402 QMA 404 (422)
T ss_pred ecc
Confidence 976
No 80
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1e-21 Score=230.52 Aligned_cols=262 Identities=17% Similarity=0.251 Sum_probs=206.8
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEE-EEEec-CCCEEEEEEc
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLG-RQIAV-NRNYICYGLK 236 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~-va~Sp-dg~~LasGs~ 236 (1395)
..++++|.||++++|+-. |+.. .....+.+|.+.|.+ ++|.+ ++-.|++|+.
T Consensus 26 ~~i~s~sRd~t~~vw~~~---~~~~-----------------------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAKK---GKQY-----------------------LETHAFEGPKGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred eEEeecCCCCceeeeecc---Cccc-----------------------ccceecccCcceeeccceeccccCcceEeecc
Confidence 468999999999999922 1111 223456667777777 77764 5567999999
Q ss_pred CCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 237 LGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 237 DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
|++|.+|..... ...+|+||...|+++.. ..++. ++|||.|.+++||.+..-. ....+|..
T Consensus 80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~-~~~~~-~iSgSWD~TakvW~~~~l~----------------~~l~gH~a 141 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSI-GEDGT-LISGSWDSTAKVWRIGELV----------------YSLQGHTA 141 (745)
T ss_pred cceEEEEecCCCCchhhhhccccceeeeec-CCcCc-eEecccccceEEecchhhh----------------cccCCcch
Confidence 999999999987 58899999999999997 55655 9999999999999987532 33567888
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASA 395 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSg 395 (1395)
.|..+..-|.+ .+++|+.++.+++|... + -+++|.+|.+.|+.+++-+++ .|+||
T Consensus 142 sVWAv~~l~e~--~~vTgsaDKtIklWk~~--~-------------------~l~tf~gHtD~VRgL~vl~~~--~flSc 196 (745)
T KOG0301|consen 142 SVWAVASLPEN--TYVTGSADKTIKLWKGG--T-------------------LLKTFSGHTDCVRGLAVLDDS--HFLSC 196 (745)
T ss_pred heeeeeecCCC--cEEeccCcceeeeccCC--c-------------------hhhhhccchhheeeeEEecCC--CeEee
Confidence 89999988887 44455555555554421 1 167888999999999999874 69999
Q ss_pred eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEE
Q 039790 396 SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL 475 (1395)
Q Consensus 396 s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl 475 (1395)
+.||.|++||+ +|.++.++.||.. .|+++... .++..++++| .|++++||+.. .|.+.+
T Consensus 197 sNDg~Ir~w~~-~ge~l~~~~ghtn-~vYsis~~----~~~~~Ivs~g-EDrtlriW~~~--------------e~~q~I 255 (745)
T KOG0301|consen 197 SNDGSIRLWDL-DGEVLLEMHGHTN-FVYSISMA----LSDGLIVSTG-EDRTLRIWKKD--------------ECVQVI 255 (745)
T ss_pred cCCceEEEEec-cCceeeeeeccce-EEEEEEec----CCCCeEEEec-CCceEEEeecC--------------ceEEEE
Confidence 99999999998 8999999999998 99999976 7888999988 99999999864 889998
Q ss_pred eccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 476 ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 476 ~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
......+.+ +.+-.+|.+ ++|+.||.||||.....
T Consensus 256 ~lPttsiWs---------a~~L~NgDI-vvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 256 TLPTTSIWS---------AKVLLNGDI-VVGGSDGRVRVFTVDKD 290 (745)
T ss_pred ecCccceEE---------EEEeeCCCE-EEeccCceEEEEEeccc
Confidence 877655433 555566665 56778999999998754
No 81
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.5e-21 Score=206.81 Aligned_cols=251 Identities=15% Similarity=0.200 Sum_probs=202.6
Q ss_pred cccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCC--EEEEEECC
Q 039790 203 QLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVH--LLASASVD 279 (1395)
Q Consensus 203 ~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~--~LaSgs~D 279 (1395)
.+...++..|..|.+.|+++++ +|.|+|+|+.|-+|+|||+... ++..+-.|.+.|+++.| .++-. .|++|+.|
T Consensus 30 ~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F-~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKF-YPPLSKSHLLSGSDD 106 (362)
T ss_pred ceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEe-cCCcchhheeeecCC
Confidence 4456778899999999999765 5899999999999999999987 57788889999999999 44443 89999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|.|.+|+..... ++..+..|...|+.+..||.+..-+++|.+..+..|+..+.....
T Consensus 107 G~i~iw~~~~W~--------------~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~--------- 163 (362)
T KOG0294|consen 107 GHIIIWRVGSWE--------------LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF--------- 163 (362)
T ss_pred CcEEEEEcCCeE--------------EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce---------
Confidence 999999998654 677888888889999999999888888888877777765433221
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
+.. -....+.|.|+|.| .+|+.++.+ .|-||.+.+......+.... .+.|+.|. ++.+|
T Consensus 164 ---------v~~---L~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-----~~~~L 222 (362)
T KOG0294|consen 164 ---------VLN---LKNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVFREIENPK--RILCATFL-----DGSEL 222 (362)
T ss_pred ---------eec---cCCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHhhhhhccc--cceeeeec-----CCceE
Confidence 111 12233449999999 677777665 49999998887777766442 68999995 88899
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+++| .|+.|++||..+. .+...|.+|...+... ...-.+++.+|++.+.||.|++||++.
T Consensus 223 ~vG~-d~~~i~~~D~ds~------------~~~~~~~AH~~RVK~i-------~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 223 LVGG-DNEWISLKDTDSD------------TPLTEFLAHENRVKDI-------ASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred EEec-CCceEEEeccCCC------------ccceeeecchhheeee-------EEEecCCceEEEEeccCceEEEEEccc
Confidence 9988 8999999999887 8999999999877541 123467889999999999999999987
Q ss_pred C
Q 039790 520 G 520 (1395)
Q Consensus 520 g 520 (1395)
.
T Consensus 283 ~ 283 (362)
T KOG0294|consen 283 E 283 (362)
T ss_pred c
Confidence 4
No 82
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=1.9e-21 Score=219.61 Aligned_cols=277 Identities=18% Similarity=0.225 Sum_probs=217.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----ceEEecc--CCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA----LRSLLRG--HTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----~~~~l~~--H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
.|...|+.+.+|...+++++|++ |.|+|||+... .+..|.. -...|.++.. .+||+.|++||+-.+|.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL-~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL-LPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEe-cCCCceEEeccccceeeeeec
Confidence 48888899999999999999987 88999999763 2333322 3467889998 899999999999999999999
Q ss_pred CCCCCCCCCcccccceEEEEEE-ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQI-LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~-~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
..... .++. .....-..+.++.+||.+..|+++.++.|.+||..+...
T Consensus 495 AapTp-------------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~------------------ 543 (705)
T KOG0639|consen 495 AAPTP-------------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL------------------ 543 (705)
T ss_pred cCCCc-------------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee------------------
Confidence 97651 0110 011123345788999999999999999999999855321
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
++.|.||.+.+.||.+++|| +.|.||+.|.+||.||+|.++.+....... .|.++.++ |.+.||+.+. .+
T Consensus 544 --VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhdF~S--QIfSLg~c----P~~dWlavGM-en 613 (705)
T KOG0639|consen 544 --VRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHDFSS--QIFSLGYC----PTGDWLAVGM-EN 613 (705)
T ss_pred --eecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhhhhh--hheecccC----CCccceeeec-cc
Confidence 67889999999999999999 899999999999999999998777665433 69999999 9999999966 89
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~ 526 (1395)
+.+.|...... ....+..|.+.+. .+.|.+.|+|+++.++|+.+..|...+|.
T Consensus 614 s~vevlh~skp-------------~kyqlhlheScVL---------SlKFa~cGkwfvStGkDnlLnawrtPyGa----- 666 (705)
T KOG0639|consen 614 SNVEVLHTSKP-------------EKYQLHLHESCVL---------SLKFAYCGKWFVSTGKDNLLNAWRTPYGA----- 666 (705)
T ss_pred CcEEEEecCCc-------------cceeecccccEEE---------EEEecccCceeeecCchhhhhhccCcccc-----
Confidence 99888887654 2233455555443 48999999999999999999999998875
Q ss_pred ceeeeeeeeccccEEEEecCCCCcC---cCCCCeEEEEEc
Q 039790 527 RMDYIAEFTVTMPILSLTGTTTDAS---PDGEHIVQIYCV 563 (1395)
Q Consensus 527 ~~~~i~~f~~~~~ils~~~~~~d~~---~s~dg~V~lWdv 563 (1395)
.|.......++++.+++..+.+ .+||....||.|
T Consensus 667 ---siFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 ---SIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ---ceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 3444445568888888874444 477877888865
No 83
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=8.1e-22 Score=229.76 Aligned_cols=302 Identities=14% Similarity=0.160 Sum_probs=224.3
Q ss_pred CeEEeecCCCCEEEEeCcC-CCCCee----eeCceEEEEEeccCCCccC-------cccccceeeeeCCCCCEEEEEEec
Q 039790 159 DSTVVIPSAPPVRLRSSKV-PKGRHL----IGNHSVYDIDVRLDGEVQP-------QLEVTPITKYISDPGLVLGRQIAV 226 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~s-p~Gr~L----~G~~~v~~v~~~~~G~~~~-------~~~~~~i~~l~~h~~~V~~va~Sp 226 (1395)
.-+.|++.|++||+|++.+ -+|..+ ...+.+-++.. +++.+. -.+......+ +....+.+++++|
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~--d~~~q~~~d~~~~~fdka~~s~~-d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE--DSTQQIMHDASAGIFDKALVSTC-DSRFGFRALAVSP 469 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccc--cCchhhhhhccCCcccccchhhc-CcccceEEEEECC
Confidence 5689999999999999654 122222 11111111111 111111 1111222222 3446799999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccce
Q 039790 227 NRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
+|++||+|..-|+||||++..- ....+..|...|.|+.|+-++ .++|++++.|+.|.|||+...-
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny------------ 537 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY------------ 537 (1080)
T ss_pred CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc------------
Confidence 9999999999999999999875 455778899999999994443 4689999999999999998643
Q ss_pred EEEEEEecCCCCCccEEEEeCCC--CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 304 VVAIQILADGDSVHPRVCWHPHK--QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~--~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
..++++.+|...|++|.|-..| ..++.+|.++.|..--..+.+.+..|... ..++ ....+++
T Consensus 538 -~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~-------------t~t~--~ktTlYD 601 (1080)
T KOG1408|consen 538 -DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH-------------TQTL--SKTTLYD 601 (1080)
T ss_pred -chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc-------------cccc--ccceEEE
Confidence 2456778899999999998877 45666666665544333333333222110 1111 2346899
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC---CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
++..|.. .++++++.|+.|+|||+.+|+..+.|++ |+| ....|... |.|.||++++ .|++|.++|+-++
T Consensus 602 m~Vdp~~-k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG-~lIKv~lD----PSgiY~atSc-sdktl~~~Df~sg- 673 (1080)
T KOG1408|consen 602 MAVDPTS-KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG-DLIKVILD----PSGIYLATSC-SDKTLCFVDFVSG- 673 (1080)
T ss_pred eeeCCCc-ceEEEEecccceEEEeccccceeeeecccccCCC-ceEEEEEC----CCccEEEEee-cCCceEEEEeccc-
Confidence 9999987 7999999999999999999999999985 445 66677777 9999999988 8999999999999
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+|+.+..+|+..++. +.|.+|-+.|++.+.||+|+||.+..
T Consensus 674 -----------EcvA~m~GHsE~VTG---------~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 -----------ECVAQMTGHSEAVTG---------VKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -----------hhhhhhcCcchheee---------eeecccchhheeecCCceEEEEECch
Confidence 999999999988765 99999999999999999999999875
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=3.7e-22 Score=222.30 Aligned_cols=274 Identities=19% Similarity=0.193 Sum_probs=210.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+-+-.....|++++.|..|++|++.. + ....+.++.|..+.|+.+.|.++++++
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~---------------------~-----k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLG---------------------E-----KSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhccc---------------------c-----hhhhhhhhhccCCCcceeeecCCCceE
Confidence 44455558899999999999999541 0 013456677788999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++++.|+.+++|+++.. .+.+|.||++.|+++.| ......+++|+.|.+|++||+....|..+.
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~-~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-------------- 299 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF-KLSHSRVVSGSADRTIKLWDLQKAYCSKTV-------------- 299 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehh-hccccceeeccccchhhhhhhhhhheeccc--------------
Confidence 99999999999999987 57899999999999999 555555999999999999999987643221
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
.. ...+..|+.. ...+++|..+.-+++|+.+.... ......+ +.|+++..+.++ .
T Consensus 300 l~-~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~-------------------~~sv~~g-g~vtSl~ls~~g-~ 354 (459)
T KOG0288|consen 300 LP-GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADK-------------------TRSVPLG-GRVTSLDLSMDG-L 354 (459)
T ss_pred cc-cccccceEec---ceeeeecccccceEEEeccCCce-------------------eeEeecC-cceeeEeeccCC-e
Confidence 11 1222334433 23455555444455555443321 3444444 489999999998 7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCC---CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYD---GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~---~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
.|.+++.|.++++.|+++....++|.... +...+.+.|| |++.|+++|+ .||.|+||++.++
T Consensus 355 ~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS----pd~~YvaAGS-~dgsv~iW~v~tg---------- 419 (459)
T KOG0288|consen 355 ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS----PDGSYVAAGS-ADGSVYIWSVFTG---------- 419 (459)
T ss_pred EEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC----CCCceeeecc-CCCcEEEEEccCc----------
Confidence 88888999999999999998888876321 2258999999 9999999955 9999999999999
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW 515 (1395)
+|...+...+... -+.++.|++.|..|++++.++.+.+|
T Consensus 420 --KlE~~l~~s~s~~-------aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 420 --KLEKVLSLSTSNA-------AITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --eEEEEeccCCCCc-------ceEEEEEcCCCchhhcccCCcceEec
Confidence 9998888766541 12359999999999999999999999
No 85
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=4.7e-21 Score=216.47 Aligned_cols=274 Identities=14% Similarity=0.230 Sum_probs=220.9
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceE-----------------Ee--ccCCCCeEEEEEeeCC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRS-----------------LL--RGHTQRVTDMAFFAED 269 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~-----------------~l--~~H~~~V~slaf~s~d 269 (1395)
+..+..|.-.|.||++++|++++++++.||+|.=|++.++... .. ++|...|.+++. ++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av-S~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV-SSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-cCC
Confidence 6778899999999999999999999999999999999886311 01 378889999999 999
Q ss_pred CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc
Q 039790 270 VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG 349 (1395)
Q Consensus 270 g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~ 349 (1395)
|.||++|+.|..|.||+.++.+ .++.+.+|.+.|.+++|......+++++.+..+.+|.......
T Consensus 214 gkylatgg~d~~v~Iw~~~t~e--------------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~- 278 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLE--------------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY- 278 (479)
T ss_pred CcEEEecCCCceEEEecCcccc--------------hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-
Confidence 9999999999999999999987 5566788999999999999888999999999999998755332
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
+..+.||.+.|..|....-. +.+..|+.|+++++|++..- ....|.+|.+ .+-|++|-
T Consensus 279 -------------------vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ee-sqlifrg~~~-sidcv~~I 336 (479)
T KOG0299|consen 279 -------------------VETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEE-SQLIFRGGEG-SIDCVAFI 336 (479)
T ss_pred -------------------HHHHhCCccceeeechhccc-ceEEeccccceeEEEecccc-ceeeeeCCCC-CeeeEEEe
Confidence 45677899999999887765 66666779999999999443 3446778887 99999995
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc---ccccccceEEEEeCCCCEEEEE
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR---LEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~---~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
+..+++++ |.||.|.+|++.+. +.+.+....++.... ....||...++..+...++++|
T Consensus 337 -----n~~HfvsG-SdnG~IaLWs~~KK------------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG 398 (479)
T KOG0299|consen 337 -----NDEHFVSG-SDNGSIALWSLLKK------------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG 398 (479)
T ss_pred -----cccceeec-cCCceEEEeeeccc------------CceeEeeccccccCCccccccccceeeeEecccCceEEec
Confidence 77788885 59999999999887 777776654433322 1233677889999999999999
Q ss_pred eCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEE
Q 039790 507 AKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILS 542 (1395)
Q Consensus 507 s~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils 542 (1395)
+.+|.|++|.++.|- ..+..+.++...+-+.+
T Consensus 399 S~~G~vrLW~i~~g~----r~i~~l~~ls~~GfVNs 430 (479)
T KOG0299|consen 399 SWSGCVRLWKIEDGL----RAINLLYSLSLVGFVNS 430 (479)
T ss_pred CCCCceEEEEecCCc----cccceeeecccccEEEE
Confidence 999999999998863 24445555544433333
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=2.8e-21 Score=219.56 Aligned_cols=317 Identities=18% Similarity=0.210 Sum_probs=214.5
Q ss_pred CCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE-EEecCCCCCccEEEEe
Q 039790 245 IITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI-QILADGDSVHPRVCWH 323 (1395)
Q Consensus 245 ~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l-~~~~~~~~~v~~v~~s 323 (1395)
+-......+.+|+..|.++++ .+.|..|+||+.|.+|++||+...... ...+ ++.......+.++.|+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~-Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~fr~l~P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAV-DPSGARFVSGSLDYTVKFWDFQGMDAS----------MRSFRQLQPCETHQINSLQYS 223 (641)
T ss_pred CCccceEeccCCceEEEEeee-cCCCceeeeccccceEEEEeccccccc----------chhhhccCcccccccceeeec
Confidence 333455678899999999999 899999999999999999999864310 0011 2223345678899999
Q ss_pred CCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 039790 324 PHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI 403 (1395)
Q Consensus 324 p~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrI 403 (1395)
+.+..||++.......++|.......+ |. .-+..+..+...+||...++|.+|+|+....|+|++.||++||
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e-~~-------KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVE-FS-------KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeee-ee-------ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 999999998888888877764432211 11 1112222255667899999999999999889999999999999
Q ss_pred EeCCCC-ceeEEecC----CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc
Q 039790 404 WDDRKS-TPLAVLRP----YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478 (1395)
Q Consensus 404 WDl~sg-~~l~tl~~----h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h 478 (1395)
||+... +.+..|+. -..-.+++++|+ +||.+|++++ .||.|.+|+.... ........-+.|
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~n----rdg~~iAagc-~DGSIQ~W~~~~~---------~v~p~~~vk~AH 361 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWN----RDGKLIAAGC-LDGSIQIWDKGSR---------TVRPVMKVKDAH 361 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecC----CCcchhhhcc-cCCceeeeecCCc---------ccccceEeeecc
Confidence 999764 33444431 111278999999 9999988866 9999999998543 001111222344
Q ss_pred CcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeecc------ccEEEEecCCCCcCc
Q 039790 479 SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVT------MPILSLTGTTTDASP 552 (1395)
Q Consensus 479 ~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~------~~ils~~~~~~d~~~ 552 (1395)
.... -+.++.||.||++|++-+.|+++++|||+.-+.+...+......|... .-.+.++|.+ ....
T Consensus 362 ~~g~-------~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS-~~~~ 433 (641)
T KOG0772|consen 362 LPGQ-------DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS-APNG 433 (641)
T ss_pred CCCC-------ceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc-ccCC
Confidence 4310 123699999999999999999999999987554332222223333332 3346677776 2223
Q ss_pred CCCCeEEEEEcCCCce-eeecccc---eEEec-CCCCCeecccCCCceEEEeecC
Q 039790 553 DGEHIVQIYCVQTQAI-QQYALDL---SQCLP-PPLENAELEKTDSNATRAFDVA 602 (1395)
Q Consensus 553 s~dg~V~lWdv~t~~i-~~~~~~~---~~cl~-~s~d~l~~~~sd~~v~~iWD~~ 602 (1395)
...|.+.+||-.+-.+ +...+.. +.|+= +...-+.++..|+.+..+||-.
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 4567899999887654 3333333 33332 4445577777787777777753
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=5.5e-22 Score=220.91 Aligned_cols=289 Identities=16% Similarity=0.198 Sum_probs=219.6
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
+.......+..|.+.|..+.|-++...|++|+.|..|++|++..+. ..+|.|..+.|+++.| ..++.++++++.|+
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~-d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDF-DSDNKHVIAASNDK 241 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeee-cCCCceEEeecCCC
Confidence 3345566778899999999999998999999999999999998763 5688888999999999 88899999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.+++|++.... ...++.+|.+.|+++.|......++.+..+..+..||..+. . |
T Consensus 242 ~~r~Wnvd~~r--------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-~-----------C 295 (459)
T KOG0288|consen 242 NLRLWNVDSLR--------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-Y-----------C 295 (459)
T ss_pred ceeeeeccchh--------------hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-h-----------e
Confidence 99999999877 34455678899999988877766555555566666665431 1 1
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
.+.+ -....+.+|..+. ..+++|-.|++||+||++++.++.+...+. .|++|..+ ++|..|+
T Consensus 296 --------~kt~-l~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls----~~g~~lL 357 (459)
T KOG0288|consen 296 --------SKTV-LPGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLS----MDGLELL 357 (459)
T ss_pred --------eccc-cccccccceEecc---eeeeecccccceEEEeccCCceeeEeecCc--ceeeEeec----cCCeEEe
Confidence 1111 1234566677662 689999999999999999999999999885 79999999 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++ .|.++++.|+++. ...++|........+ + ...+.|||++.|+++|+.||.||||++.+|
T Consensus 358 sss-RDdtl~viDlRt~------------eI~~~~sA~g~k~as---D--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 358 SSS-RDDTLKVIDLRTK------------EIRQTFSAEGFKCAS---D--WTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eec-CCCceeeeecccc------------cEEEEeecccccccc---c--cceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 986 9999999999988 777777655432111 1 236899999999999999999999999987
Q ss_pred CCCCCcceeeeeeeeccccE--EEEecCCCCcC--cCCCCeEEEE
Q 039790 521 PNPASTRMDYIAEFTVTMPI--LSLTGTTTDAS--PDGEHIVQIY 561 (1395)
Q Consensus 521 ~~~~~~~~~~i~~f~~~~~i--ls~~~~~~d~~--~s~dg~V~lW 561 (1395)
+-+ ..+..-..+..+ ++|++.. .++ ++.++.+.+|
T Consensus 420 KlE-----~~l~~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 420 KLE-----KVLSLSTSNAAITSLSWNPSG-SGLLSADKQKAVTLW 458 (459)
T ss_pred eEE-----EEeccCCCCcceEEEEEcCCC-chhhcccCCcceEec
Confidence 632 223332222223 4444444 222 3456777777
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=4e-21 Score=225.70 Aligned_cols=277 Identities=11% Similarity=0.144 Sum_probs=210.7
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEE-EEEeeCCCCEEEEEECCCcEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTD-MAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~s-laf~s~dg~~LaSgs~DgtV~ 283 (1395)
.-+.+.+|...|..+++.. +..+++|+.||+++||+-..+. .+.+.+|.+.|.. ++|...++-.|++|+.|++|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 4467889999998877654 4479999999999999987763 4568889999888 999445566799999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+|.+.... .+.++.+|...|+++....++. +++++.|.+.++|-....
T Consensus 85 v~~~~~~~--------------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l----------------- 132 (745)
T KOG0301|consen 85 VFKLSQAE--------------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL----------------- 132 (745)
T ss_pred EEecCCCC--------------chhhhhccccceeeeecCCcCc-eEecccccceEEecchhh-----------------
Confidence 99999876 6677888999887777666654 444444555555533221
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...+.+|...|+++++-|.+ .++|||.|++||+|.- ++++++|.||.+ .|+.|++. + +..+++|+
T Consensus 133 -----~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD-~VRgL~vl----~-~~~flScs 197 (745)
T KOG0301|consen 133 -----VYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTD-CVRGLAVL----D-DSHFLSCS 197 (745)
T ss_pred -----hcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchh-heeeeEEe----c-CCCeEeec
Confidence 33477899999999999975 8999999999999964 899999999998 99999997 4 44677766
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
.||.|++|++ ++ .|+.++.+|..-+++ +....++..+++++.|++++||+...
T Consensus 198 -NDg~Ir~w~~-~g------------e~l~~~~ghtn~vYs---------is~~~~~~~Ivs~gEDrtlriW~~~e---- 250 (745)
T KOG0301|consen 198 -NDGSIRLWDL-DG------------EVLLEMHGHTNFVYS---------ISMALSDGLIVSTGEDRTLRIWKKDE---- 250 (745)
T ss_pred -CCceEEEEec-cC------------ceeeeeeccceEEEE---------EEecCCCCeEEEecCCceEEEeecCc----
Confidence 9999999999 55 899999999876654 66667888999999999999999652
Q ss_pred CCcceeeeeeeecc-ccEEEEecCCC-Cc-CcCCCCeEEEEEcCC
Q 039790 524 ASTRMDYIAEFTVT-MPILSLTGTTT-DA-SPDGEHIVQIYCVQT 565 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~-~~ils~~~~~~-d~-~~s~dg~V~lWdv~t 565 (1395)
+...| ..+ ..+++.+.... |. +++.||.||||....
T Consensus 251 ---~~q~I---~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 251 ---CVQVI---TLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ---eEEEE---ecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 22222 222 23444443320 21 245678888887654
No 89
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=4.5e-21 Score=217.25 Aligned_cols=251 Identities=18% Similarity=0.229 Sum_probs=202.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC-CCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN-RNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd-g~~ 230 (1395)
-.||..+..+++++..+.|.+||.....+ .....-+..+-.++.+|.+.-++++|++. .-+
T Consensus 131 RymPQnp~iVAt~t~~~dv~Vfd~tk~~s------------------~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 131 RYMPQNPNIVATKTSSGDVYVFDYTKHPS------------------KPKASGECRPDLRLKGHEKEGYGLSWNRQQEGT 192 (422)
T ss_pred hhCCCCCcEEEecCCCCCEEEEEeccCCC------------------cccccccCCCceEEEeeccccccccccccccee
Confidence 45667778889999999999999321111 10001134566788899998888999984 457
Q ss_pred EEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 231 ICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
|++|+.|+.|++||+... ....+.+|...|.+++|+..+..+|++++.|+.+.|||++++..
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~---------- 262 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS---------- 262 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC----------
Confidence 999999999999999763 35688999999999999888899999999999999999996320
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
........|...+.|+.|+|.+..+|++|+ ++++..||.++... .+..+.+|.+.|.+
T Consensus 263 --~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-------------------~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 263 --KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-------------------PLHTFEGHEDEVFQ 321 (422)
T ss_pred --CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------------------CceeccCCCcceEE
Confidence 123455678899999999999999999988 66666666655433 37889999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCC--------------ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKS--------------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg--------------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
|.|+|.....||+++.|+++.|||+..- +++..-.||.. .|..+.|+ |+..+++++-+.|+
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWn----p~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWN----PNEPWTIASVAEDN 396 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCC----CCCCeEEEEecCCc
Confidence 9999999899999999999999998641 34567779987 99999999 99999888778999
Q ss_pred eEEEEECCC
Q 039790 448 ELKIWASAE 456 (1395)
Q Consensus 448 ~I~IWDl~t 456 (1395)
.+.||.+..
T Consensus 397 ~LqIW~~s~ 405 (422)
T KOG0264|consen 397 ILQIWQMAE 405 (422)
T ss_pred eEEEeeccc
Confidence 999999864
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.1e-21 Score=206.30 Aligned_cols=255 Identities=19% Similarity=0.227 Sum_probs=195.7
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECC------C------------------------------C-
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNII------T------------------------------A- 248 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~------~------------------------------~- 248 (1395)
+.++.+|.||.+.|++++|++.+.++++++.|++.+||... . +
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 37888999999999999999999999999999999999510 0 0
Q ss_pred ----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC
Q 039790 249 ----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP 324 (1395)
Q Consensus 249 ----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp 324 (1395)
.+..|.+|.+.|.+..| -..|+.+++++.|.+..+||+++|. .+..+.+|+...+.++-||
T Consensus 260 tiRvPl~~ltgH~~vV~a~dW-L~gg~Q~vTaSWDRTAnlwDVEtge--------------~v~~LtGHd~ELtHcstHp 324 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDW-LAGGQQMVTASWDRTANLWDVETGE--------------VVNILTGHDSELTHCSTHP 324 (481)
T ss_pred eeeeeeeeeeccccceEehhh-hcCcceeeeeeccccceeeeeccCc--------------eeccccCcchhccccccCC
Confidence 23467899999999999 7789999999999999999999998 5677788999999999999
Q ss_pred CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 039790 325 HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIW 404 (1395)
Q Consensus 325 ~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIW 404 (1395)
... ++++++.+..+++|+.+. .+..+.+|.||.+.|+++.|.-++ .+++|+.|.+|+||
T Consensus 325 tQr-LVvTsSrDtTFRLWDFRe------------------aI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 325 TQR-LVVTSSRDTTFRLWDFRE------------------AIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVW 383 (481)
T ss_pred cce-EEEEeccCceeEeccchh------------------hcceeeeecccccceeEEEEecCC--ceeecCCCceEEEe
Confidence 876 444555555555554321 123378899999999999999875 89999999999999
Q ss_pred eCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc
Q 039790 405 DDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL 483 (1395)
Q Consensus 405 Dl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~ 483 (1395)
|+++. .++.+++... +++.|+.+ ..+..|+.-. +++.|+|||+...+--.+| ...-.+|...
T Consensus 384 dLrNMRsplATIRtdS--~~NRvavs----~g~~iIAiPh-DNRqvRlfDlnG~RlaRlP--------rtsRqgHrRM-- 446 (481)
T KOG0300|consen 384 DLRNMRSPLATIRTDS--PANRVAVS----KGHPIIAIPH-DNRQVRLFDLNGNRLARLP--------RTSRQGHRRM-- 446 (481)
T ss_pred eeccccCcceeeecCC--ccceeEee----cCCceEEecc-CCceEEEEecCCCccccCC--------ccccccccee--
Confidence 99985 6888988654 79999998 5666777655 8899999999765110000 0011233322
Q ss_pred cccccccceEEEEeCCC--CEEEEEeCCCeEEEEEcCCC
Q 039790 484 RLEDAFFNQVVALNRAG--LFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 484 ~~~~~~~~~~l~~S~dg--~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++++|..+- .-|++++.|..+.-|.++..
T Consensus 447 -------V~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 447 -------VTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred -------eeeeeccccCcccccccccccceeeeeEeccc
Confidence 2246665432 45778889999999998763
No 91
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=3.2e-20 Score=228.59 Aligned_cols=210 Identities=14% Similarity=0.216 Sum_probs=155.8
Q ss_pred cceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC---------ceEEeccCCCCeEEEEEeeCCCC-EEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA---------LRSLLRGHTQRVTDMAFFAEDVH-LLAS 275 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~---------~~~~l~~H~~~V~slaf~s~dg~-~LaS 275 (1395)
.++..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++ ....+.+|...|.+|+| ++++. +|++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf-~P~g~~iLaS 143 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW-NPMNYYIMCS 143 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE-CCCCCeEEEE
Confidence 456788999999999999996 799999999999999999753 23467899999999999 67666 4679
Q ss_pred EECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 276 ASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 276 gs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
|+.||+|+|||+.++. . +..+. +...+.++.|+++|..+++++.++.+.+||... +..
T Consensus 144 gS~DgtIrIWDl~tg~-----------~---~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~------ 201 (568)
T PTZ00420 144 SGFDSFVNIWDIENEK-----------R---AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEI------ 201 (568)
T ss_pred EeCCCeEEEEECCCCc-----------E---EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcE------
Confidence 9999999999999876 1 11122 345788999999998777667677777777643 221
Q ss_pred CCCccCccccccceEEEcccCCCeEE-----EEEecCCCcEEEEEeCCC----cEEEEeCCC-CceeEEecCCCCCCeeE
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITE-----LSMCQWLTTRLASASLDG----TVKIWDDRK-STPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~s-----lafspdg~~~LaSgs~Dg----~IrIWDl~s-g~~l~tl~~h~~~~V~s 425 (1395)
+..+.+|.+.+.+ ..|++++ .+|++++.|+ .|+|||++. +.++..+..+....+..
T Consensus 202 -------------i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~ 267 (568)
T PTZ00420 202 -------------ASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI 267 (568)
T ss_pred -------------EEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE
Confidence 4556778876543 3345777 6888887774 799999995 67777765443212222
Q ss_pred EEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 426 VTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 426 V~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
-.|. .++|.++++| +.|++|++|++..+
T Consensus 268 p~~D---~~tg~l~lsG-kGD~tIr~~e~~~~ 295 (568)
T PTZ00420 268 PHYD---ESTGLIYLIG-KGDGNCRYYQHSLG 295 (568)
T ss_pred Eeee---CCCCCEEEEE-ECCCeEEEEEccCC
Confidence 2333 1457777765 49999999999765
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=3.6e-20 Score=196.27 Aligned_cols=295 Identities=14% Similarity=0.091 Sum_probs=218.1
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
.+.||...++.+.|+.+|.+|++|++|.++.||-..+| .+.++.||++.|+|++. ..+..++++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Di-d~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDI-DWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEe-cCCcceeeeccccceeEEEEcCC
Confidence 46789999999999999999999999999999998777 47799999999999999 88899999999999999999999
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-----CCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-----GNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-----~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|+ .+... .....|..+.|+.++..++++.. .+.+.+++....... -.
T Consensus 84 Gk--------------~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~-------------~~ 135 (327)
T KOG0643|consen 84 GK--------------QLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD-------------ID 135 (327)
T ss_pred Cc--------------EEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh-------------hc
Confidence 98 22222 23567889999999987777654 344556665433210 01
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...++..+..+...++.+-|.|-+ .+|++|..||.|.+||+++| +.+...+.|.. .|+.+.|+ +|..++++++
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s----~d~T~FiT~s 209 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSS-KINDLQFS----RDRTYFITGS 209 (327)
T ss_pred ccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhcc-cccccccc----CCcceEEecc
Confidence 112356677788999999999998 89999999999999999998 45556678887 99999999 9999999965
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE--EcCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI--HMDYGP 521 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW--dl~~g~ 521 (1395)
.|.+-++||+.+. .++++|..... + .+.+++|-..+++.|+.....-+- .-+.|+
T Consensus 210 -~Dttakl~D~~tl------------~v~Kty~te~P---------v-N~aaisP~~d~VilgGGqeA~dVTTT~~r~GK 266 (327)
T KOG0643|consen 210 -KDTTAKLVDVRTL------------EVLKTYTTERP---------V-NTAAISPLLDHVILGGGQEAMDVTTTSTRAGK 266 (327)
T ss_pred -cCccceeeeccce------------eeEEEeeeccc---------c-cceecccccceEEecCCceeeeeeeecccccc
Confidence 9999999999988 89999875432 1 247788877777776644332221 122232
Q ss_pred CCCCccee-----eeeeeecc-ccEEEEecCCCCcC----cCCCCeEEEEEcCC
Q 039790 522 NPASTRMD-----YIAEFTVT-MPILSLTGTTTDAS----PDGEHIVQIYCVQT 565 (1395)
Q Consensus 522 ~~~~~~~~-----~i~~f~~~-~~ils~~~~~~d~~----~s~dg~V~lWdv~t 565 (1395)
.+. +.++ .+.++.+| +|+-++...+ ++. ..+||.|+|.-...
T Consensus 267 FEA-rFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 267 FEA-RFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hhh-hHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEecc
Confidence 211 1111 23334444 4666665554 332 24578888875443
No 93
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.87 E-value=1.1e-21 Score=205.54 Aligned_cols=252 Identities=14% Similarity=0.169 Sum_probs=207.2
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.+.-|.+|.+|.+.|++..+..+...-|+++.|-+-+|||.-+|. ++.| .|..-|..++| +.|.++|++|+.+..+|
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af-~~ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAF-SQDSNYLLTGGQEKLLR 125 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEe-cccchhhhccchHHHhh
Confidence 345678899999999999999999999999999999999999985 4444 58999999999 99999999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
|||+...+. ...-+.+|.+.|..+.|+.....|+.++.++.+..||.+. +..
T Consensus 126 vfdln~p~A-------------pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT-gt~-------------- 177 (334)
T KOG0278|consen 126 VFDLNRPKA-------------PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT-GTE-------------- 177 (334)
T ss_pred hhhccCCCC-------------CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc-CcE--------------
Confidence 999987651 1233567788899999999998888886666666666543 322
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
++.+. ....|+++.++++| . +++....+.|++||..+-..++.++... .|.+.... |+...++++|
T Consensus 178 -----v~sL~-~~s~VtSlEvs~dG-~-ilTia~gssV~Fwdaksf~~lKs~k~P~--nV~SASL~----P~k~~fVaGg 243 (334)
T KOG0278|consen 178 -----VQSLE-FNSPVTSLEVSQDG-R-ILTIAYGSSVKFWDAKSFGLLKSYKMPC--NVESASLH----PKKEFFVAGG 243 (334)
T ss_pred -----EEEEe-cCCCCcceeeccCC-C-EEEEecCceeEEeccccccceeeccCcc--cccccccc----CCCceEEecC
Confidence 33343 55679999999998 4 5555677889999999999999998775 48999997 8887777766
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEE-eccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTL-ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl-~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
.|..++.||+.++ ..+..+ ++|.+.+. ++.|+|||...++|+.||+|+||....++.
T Consensus 244 -ed~~~~kfDy~Tg------------eEi~~~nkgh~gpVh---------cVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 244 -EDFKVYKFDYNTG------------EEIGSYNKGHFGPVH---------CVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -cceEEEEEeccCC------------ceeeecccCCCCceE---------EEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999 555555 77777764 599999999999999999999999877653
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=9e-21 Score=212.13 Aligned_cols=238 Identities=19% Similarity=0.262 Sum_probs=196.6
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
..++.+...+....+.+|+.|..+.++|...+. +.+|.||...|+++.| +++...+++++.|-.|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~-~~~~~~v~~aSad~~i~vws~~~~s---- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKF-HKDLDTVITASADEIIRVWSVPLSS---- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEe-ccchhheeecCCcceEEeecccccc----
Confidence 467777787777899999999999999999874 7799999999999999 8899999999999999999988655
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc--
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-- 373 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-- 373 (1395)
+......|+..|+.+..+|.|.+++.+..+++....+...... +....
T Consensus 295 ----------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~--------------------lt~vs~~ 344 (506)
T KOG0289|consen 295 ----------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ--------------------LTVVSDE 344 (506)
T ss_pred ----------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--------------------EEEEeec
Confidence 2344567889999999999999888888877776666543211 11111
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
+.+-.+++.+|+||| .+|.+|..||.|+|||+.++..+..|.+|.+ +|.+|.|+ .+|-||++++ +|+.|++||
T Consensus 345 ~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~Fs----ENGY~Lat~a-dd~~V~lwD 417 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFS----ENGYWLATAA-DDGSVKLWD 417 (506)
T ss_pred cccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEec----cCceEEEEEe-cCCeEEEEE
Confidence 123458999999999 8999999999999999999999999999998 99999999 8999999987 999999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
++.. +.+++|...... -...+.|...|.+|+.++.|=.||+++
T Consensus 418 LRKl------------~n~kt~~l~~~~--------~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 418 LRKL------------KNFKTIQLDEKK--------EVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ehhh------------cccceeeccccc--------cceeEEEcCCCCeEEeecceeEEEEEe
Confidence 9987 666777655432 123689999999999997776666665
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-19 Score=187.04 Aligned_cols=296 Identities=17% Similarity=0.168 Sum_probs=209.5
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECC------CC----------ceEEeccCCCCeEEEEEeeCCCC
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNII------TA----------LRSLLRGHTQRVTDMAFFAEDVH 271 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~------~~----------~~~~l~~H~~~V~slaf~s~dg~ 271 (1395)
.|..+ .....|..++|+|.|.+.++|+...++||.... .+ ....-+.|.+.|+|.+| +++|.
T Consensus 25 ~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w-s~~ge 102 (350)
T KOG0641|consen 25 AINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW-SPCGE 102 (350)
T ss_pred EEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe-cCccC
Confidence 33344 356789999999999999999999999987432 21 12234568999999999 99999
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC---CCeEEEEEe-CCeEEEEEcCCCC
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH---KQEILMLAI-GNRILKIDSNRVG 347 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~---~~~lla~g~-~~~ii~~d~~~~~ 347 (1395)
+|++|+.|.+|++..+....+.. ++. .+ -+.-|++.+..++|-.+ +..+++++. ++.-+.+-+-..+
T Consensus 103 liatgsndk~ik~l~fn~dt~~~-----~g~---dl-e~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNA-----TGH---DL-EFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred eEEecCCCceEEEEecccccccc-----cCc---ce-eeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 99999999999998777654211 111 11 23456778888888543 345555544 3433333222222
Q ss_pred ccccccCCCCCccCccccccceEEEcccCCCeEEEE-EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC--CCC----
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS-MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP--YDG---- 420 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla-fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~--h~~---- 420 (1395)
.+.+.+.||.+.|.++- |+ | .+|++|+.|.+||+||++-..++.++.. |.+
T Consensus 174 -------------------~~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles 231 (350)
T KOG0641|consen 174 -------------------QGFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES 231 (350)
T ss_pred -------------------CcceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccceeeeccCcccCCCccc
Confidence 23677889999998774 33 3 7999999999999999999999998752 322
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
..|.+|+.. |.|+.|+++- .|....+||++.+ +.++.|..|...+. ++.|+|..
T Consensus 232 savaav~vd----psgrll~sg~-~dssc~lydirg~------------r~iq~f~phsadir---------~vrfsp~a 285 (350)
T KOG0641|consen 232 SAVAAVAVD----PSGRLLASGH-ADSSCMLYDIRGG------------RMIQRFHPHSADIR---------CVRFSPGA 285 (350)
T ss_pred ceeEEEEEC----CCcceeeecc-CCCceEEEEeeCC------------ceeeeeCCCcccee---------EEEeCCCc
Confidence 379999998 9999999855 9999999999999 99999999988765 49999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC-cCCCCeEEEEEc
Q 039790 501 LFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS-PDGEHIVQIYCV 563 (1395)
Q Consensus 501 ~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~-~s~dg~V~lWdv 563 (1395)
.|+++++.|..|++-|+...-. ....+-.+.+++-....+.|.......+ .+.|.++.+|-+
T Consensus 286 ~yllt~syd~~ikltdlqgdla-~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 286 HYLLTCSYDMKIKLTDLQGDLA-HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eEEEEecccceEEEeecccchh-hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 9999999999999999875321 1112223344433322222222211111 246778888865
No 96
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.2e-21 Score=203.23 Aligned_cols=255 Identities=19% Similarity=0.233 Sum_probs=192.0
Q ss_pred eCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEee-CCCCEEEEEECCCcEEEEEC
Q 039790 213 ISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~IWdl 287 (1395)
+.|.+.|..+.....|++||+|+.|++|+|+.+..+ .+..|.||.++|+.++|.. .-|.+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468888988888889999999999999999999875 4679999999999999943 36999999999999999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC--eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ--EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~--~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
..|... .......|+..+++|+|.|++- .|+++++++.|-++.....+..
T Consensus 88 ~~g~w~------------k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w---------------- 139 (299)
T KOG1332|consen 88 ENGRWT------------KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW---------------- 139 (299)
T ss_pred CCCchh------------hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc----------------
Confidence 887621 1223456788999999988753 3444455676666655443211
Q ss_pred ccceEEEcccCCCeEEEEEecC---C----------CcEEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCCeeEEEEee
Q 039790 366 INGVQLVGKHDGEITELSMCQW---L----------TTRLASASLDGTVKIWDDRKS--TPLAVLRPYDGHPVNCVTFLI 430 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspd---g----------~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~~~V~sV~fs~ 430 (1395)
...+....|.-.|++++|.|- | .+.|++|+.|..|+||+..++ ..-++|.+|.+ +|+.|+|.|
T Consensus 140 -~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP 217 (299)
T KOG1332|consen 140 -TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAP 217 (299)
T ss_pred -cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhcc
Confidence 013445679999999999886 2 157999999999999998875 44556999998 999999994
Q ss_pred cCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE--EEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 431 GPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC--TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 431 ~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~--l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
...--..+|+++ +.||+|.||-.+.. .+.|+. +.+|. -.+..+.||..|++|+.++.
T Consensus 218 ~~gl~~s~iAS~-SqDg~viIwt~~~e--------~e~wk~tll~~f~------------~~~w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 218 SVGLPKSTIASC-SQDGTVIIWTKDEE--------YEPWKKTLLEEFP------------DVVWRVSWSLSGNILAVSGG 276 (299)
T ss_pred ccCCCceeeEEe-cCCCcEEEEEecCc--------cCcccccccccCC------------cceEEEEEeccccEEEEecC
Confidence 322122466765 59999999987632 122321 22211 12346999999999999999
Q ss_pred CCeEEEEEcC
Q 039790 509 KNAIYAIHMD 518 (1395)
Q Consensus 509 Dg~I~iWdl~ 518 (1395)
|+.|++|.-+
T Consensus 277 dNkvtlwke~ 286 (299)
T KOG1332|consen 277 DNKVTLWKEN 286 (299)
T ss_pred CcEEEEEEeC
Confidence 9999999854
No 97
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=6.1e-20 Score=194.17 Aligned_cols=274 Identities=12% Similarity=0.056 Sum_probs=212.6
Q ss_pred CCCCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEE
Q 039790 145 HQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQI 224 (1395)
Q Consensus 145 ~~~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~ 224 (1395)
..++.+.+.+.-.+..|++++.|+++++|+++. ++.+ .--.+.+|.+.|..++|
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~--~r~~------------------------~~~~~~gh~~svdql~w 72 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLER--DRFR------------------------KELVYRGHTDSVDQLCW 72 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEecc--hhhh------------------------hhhcccCCCcchhhhee
Confidence 344556678888889999999999999999541 0111 11245689999999999
Q ss_pred ec-CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccce
Q 039790 225 AV-NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 225 Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
++ +...+++++.|.+|++||+..++...-...++.=..+.| +|+|.+++.++.|..|.+.|.++.+....+
T Consensus 73 ~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~w-sp~g~~~~~~~kdD~it~id~r~~~~~~~~------- 144 (313)
T KOG1407|consen 73 DPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITW-SPDGEYIAVGNKDDRITFIDARTYKIVNEE------- 144 (313)
T ss_pred CCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEE-cCCCCEEEEecCcccEEEEEecccceeehh-------
Confidence 88 668999999999999999998853333333444456788 899999999999999999999987622211
Q ss_pred EEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE
Q 039790 304 VVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla 383 (1395)
.....+.-++|+-++..+|.....|++.++... ..+++..+..|.....||.
T Consensus 145 --------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp--------------------sLkpv~si~AH~snCicI~ 196 (313)
T KOG1407|consen 145 --------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP--------------------SLKPVQSIKAHPSNCICIE 196 (313)
T ss_pred --------cccceeeeeeecCCCCEEEEecCCceEEEEecc--------------------ccccccccccCCcceEEEE
Confidence 123345578999666666666665777776432 2344788889999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
|+|+| ++||+|+.|..+-+||+..--|++.|.-++= +|..|.|+ .||++|+++ |.|..|-|=++.+|
T Consensus 197 f~p~G-ryfA~GsADAlvSLWD~~ELiC~R~isRldw-pVRTlSFS----~dg~~lASa-SEDh~IDIA~vetG------ 263 (313)
T KOG1407|consen 197 FDPDG-RYFATGSADALVSLWDVDELICERCISRLDW-PVRTLSFS----HDGRMLASA-SEDHFIDIAEVETG------ 263 (313)
T ss_pred ECCCC-ceEeeccccceeeccChhHhhhheeeccccC-ceEEEEec----cCcceeecc-CccceEEeEecccC------
Confidence 99999 8999999999999999999999999998885 99999999 899999995 49999999999998
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK 509 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D 509 (1395)
..+..+...... ..++|+|...+|+-++.|
T Consensus 264 ------d~~~eI~~~~~t----------~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 264 ------DRVWEIPCEGPT----------FTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ------CeEEEeeccCCc----------eeEEecCCCceeeEEecC
Confidence 555555433211 259999999999887755
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=1.5e-20 Score=232.05 Aligned_cols=301 Identities=16% Similarity=0.150 Sum_probs=224.2
Q ss_pred CCCCEEEEEEecCCCEEEEEE--cCCeEEEEECCC-------------CceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 215 DPGLVLGRQIAVNRNYICYGL--KLGNIRILNIIT-------------ALRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs--~DG~IrIWd~~~-------------~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
+...|..+.++|||..+|+|+ .||.++||+.+. +.+.....|.+.|+|+.| ++||.+||+|++|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~-S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF-SPDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE-CCCCCeEeeccCc
Confidence 345689999999999999999 899999998753 134567789999999999 9999999999999
Q ss_pred CcEEEEECCCCCCCCCC----cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 280 GRFFIWNITEGPDEEDK----PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~----~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.|.||+......-..+ ....-....++.++.+|+..|..++|+|++..++.++.++.|++|+.....
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~-------- 162 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE-------- 162 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce--------
Confidence 99999998841100000 011112334667778899999999999999888888889999988875542
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-----CCeeEEEEee
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-----HPVNCVTFLI 430 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-----~~V~sV~fs~ 430 (1395)
.+.++.+|.+.|..+.|.|-| +|||+-+.|++|+||++.+..+.+.+.++.. ..++.+.||
T Consensus 163 ------------~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS- 228 (942)
T KOG0973|consen 163 ------------LLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS- 228 (942)
T ss_pred ------------eeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC-
Confidence 168889999999999999999 8999999999999999888888888775532 267899999
Q ss_pred cCCCCCcEEEEEecCCC---eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC--------
Q 039790 431 GPHPQHIVLITGGPLNR---ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-------- 499 (1395)
Q Consensus 431 ~~~pdg~~L~s~Gs~Dg---~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-------- 499 (1395)
|||.+|++....++ ++.|.+- +.|++-..|-+|...+. ++.|+|.
T Consensus 229 ---PDG~~las~nA~n~~~~~~~IieR------------~tWk~~~~LvGH~~p~e---------vvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 229 ---PDGHHLASPNAVNGGKSTIAIIER------------GTWKVDKDLVGHSAPVE---------VVRFNPKLFERNNKN 284 (942)
T ss_pred ---CCcCeecchhhccCCcceeEEEec------------CCceeeeeeecCCCceE---------EEEeChHHhcccccc
Confidence 99999998654443 4555543 56799999999988653 3555431
Q ss_pred -----C----CEEEEEeCCCeEEEEEcCCCCCCCCcceeeeee-eeccccEEEEe--cCCCCcCcCCCCeEEEEEcCCCc
Q 039790 500 -----G----LFLLANAKKNAIYAIHMDYGPNPASTRMDYIAE-FTVTMPILSLT--GTTTDASPDGEHIVQIYCVQTQA 567 (1395)
Q Consensus 500 -----g----~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~-f~~~~~ils~~--~~~~d~~~s~dg~V~lWdv~t~~ 567 (1395)
+ .++++|+.|++|-||...... -+-.+.+ |......++|. |.. -...+-||+|.++.++.++
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R-----Pl~vi~~lf~~SI~DmsWspdG~~-LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPR-----PLFVIHNLFNKSIVDMSWSPDGFS-LFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCCC-----chhhhhhhhcCceeeeeEcCCCCe-EEEEecCCeEEEEEcchHH
Confidence 1 278899999999999975422 1222222 22222223333 443 2225789999999888765
Q ss_pred e
Q 039790 568 I 568 (1395)
Q Consensus 568 i 568 (1395)
+
T Consensus 359 l 359 (942)
T KOG0973|consen 359 L 359 (942)
T ss_pred h
Confidence 4
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.4e-19 Score=192.79 Aligned_cols=252 Identities=10% Similarity=0.102 Sum_probs=203.9
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEEC--CCcEEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASV--DGRFFI 284 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~--DgtV~I 284 (1395)
+.+.|....+.|.++.|+.+|.+|++++.|.+|+|||..++ +..++..+...|..++| ....+.++.++. |.+||.
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~F-th~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACF-THHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEE-ecCCceEEEccCCCCCceEE
Confidence 33445555688999999999999999999999999999998 47788888888999999 556666666666 889999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
-++.+.+ .++.+.+|...|.+++.+|.+..++.++.|+.+..||.+.. +.
T Consensus 85 Lsl~dNk--------------ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~c--------------- 134 (311)
T KOG1446|consen 85 LSLHDNK--------------YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KC--------------- 134 (311)
T ss_pred EEeecCc--------------eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CC---------------
Confidence 9999988 78999999999999999999988888888889888887522 11
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceeEEecCC---CCCCeeEEEEeecCCCCCcEE
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS--TPLAVLRPY---DGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h---~~~~V~sV~fs~~~~pdg~~L 439 (1395)
...+ +...-..++|.|.| -++|++...+.|++||+|.- .+..+|.-. .. ..+.|.|+ |||++|
T Consensus 135 ----qg~l--~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~-ew~~l~FS----~dGK~i 202 (311)
T KOG1446|consen 135 ----QGLL--NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA-EWTDLEFS----PDGKSI 202 (311)
T ss_pred ----ceEE--ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc-ceeeeEEc----CCCCEE
Confidence 1111 22223458999998 88999888889999999973 455555432 33 78999999 999999
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.+. .++.+++.|.-+| ..+.+|.++...... .-..+|+|||+++++|+.||+|.+|++++
T Consensus 203 LlsT-~~s~~~~lDAf~G------------~~~~tfs~~~~~~~~------~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 203 LLST-NASFIYLLDAFDG------------TVKSTFSGYPNAGNL------PLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEEe-CCCcEEEEEccCC------------cEeeeEeeccCCCCc------ceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 9866 8899999999988 788888887654311 12588999999999999999999999988
Q ss_pred CC
Q 039790 520 GP 521 (1395)
Q Consensus 520 g~ 521 (1395)
|.
T Consensus 264 g~ 265 (311)
T KOG1446|consen 264 GK 265 (311)
T ss_pred Cc
Confidence 75
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.6e-21 Score=229.43 Aligned_cols=244 Identities=16% Similarity=0.222 Sum_probs=190.2
Q ss_pred EEEEEEec-CCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 219 VLGRQIAV-NRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 219 V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
+..|.|.. +.++||+++.+|.|.+||+... .+..|..|+..|++++|++...++|+|||.||+|++||++..+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-- 167 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-- 167 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--
Confidence 34566664 5789999999999999999872 4668999999999999988889999999999999999999877
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
...++......+..|.|+|...+.|+++.+++++..|+.+.-. +| ...+.
T Consensus 168 ------------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----------r~--------~~k~~ 217 (839)
T KOG0269|consen 168 ------------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD----------RC--------EKKLT 217 (839)
T ss_pred ------------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch----------hH--------HHHhh
Confidence 3344455677889999999988888888887776666543211 11 45677
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNRELKI 451 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I~I 451 (1395)
.|.+.|.|+.|+|++ .+||||+.|+.|+|||..+++.-..+.-+...+|.+|.|- |+..+.+++++ .|-.|+|
T Consensus 218 AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR----P~~~~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR----PARSYHLATCSMVVDTSVHV 292 (839)
T ss_pred cccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeec----cCccchhhhhhccccceEEE
Confidence 899999999999977 8999999999999999987654443433455589999998 77766544332 6889999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe-CCCCEEEEEeCCCeEEEEEcCC
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN-RAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S-~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
||++.. +-...+|..|...+.. ++|. .|...|.++++|++|+.-.++.
T Consensus 293 WDvrRP-----------YIP~~t~~eH~~~vt~---------i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 293 WDVRRP-----------YIPYATFLEHTDSVTG---------IAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred Eeeccc-----------cccceeeeccCccccc---------eeccCCCceeeEeecCccHHHHhhhhc
Confidence 999864 3566788888876654 5553 4667888899999886555544
No 101
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.2e-20 Score=210.43 Aligned_cols=247 Identities=15% Similarity=0.209 Sum_probs=199.9
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+++....+.|+++.|-.||++||.|...|.|+|||..+. .+..+.+|..+|..+.|++.++..|++|+.|+.+++||+.
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 334445588999999999999999999999999996664 4778999999999999977888899999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+.. ....+.+|.++|.+..|+|..++++++|+-++.+++|+.+.... .
T Consensus 142 ~a~--------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~------------------~ 189 (487)
T KOG0310|consen 142 TAY--------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS------------------R 189 (487)
T ss_pred CcE--------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc------------------e
Confidence 764 23356788999999999999988887777665555555443211 0
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
+..+ .|+.+|..+.|-|.| .+||+++. ..|||||+.+| +.+..+..|.. .|+|+++. .++..|+++| .|+
T Consensus 190 v~el-nhg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~----s~~~rLlS~s-LD~ 260 (487)
T KOG0310|consen 190 VVEL-NHGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLA----SDSTRLLSGS-LDR 260 (487)
T ss_pred eEEe-cCCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEee----cCCceEeecc-ccc
Confidence 2333 599999999999988 78998874 56999999965 55555555876 99999999 8899999977 999
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.|++||+.+. +.+..+....... .+++++|+..++.|-.||.+.+-+...
T Consensus 261 ~VKVfd~t~~------------Kvv~s~~~~~pvL----------siavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 261 HVKVFDTTNY------------KVVHSWKYPGPVL----------SIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ceEEEEccce------------EEEEeeeccccee----------eEEecCCCceEEEecccceeeeehhhc
Confidence 9999998665 8888888766432 489999999999999999887765443
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=2e-20 Score=200.96 Aligned_cols=297 Identities=15% Similarity=0.178 Sum_probs=215.3
Q ss_pred ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC----CCCCcccccceEEEEEEecCCCCCccEEEEeC
Q 039790 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD----EEDKPQILGKIVVAIQILADGDSVHPRVCWHP 324 (1395)
Q Consensus 249 ~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~----~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp 324 (1395)
+...+..|+..+.+.+| ++||.++++|+.|..|+|.|+...-. .+..+.-....-..++++.+|-..|+++.|||
T Consensus 104 Et~ylt~HK~~cR~aaf-s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAF-SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred ceEEEeecccceeeeee-CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34567889999999999 99999999999999999999883210 00000011112235778889999999999999
Q ss_pred CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 039790 325 HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIW 404 (1395)
Q Consensus 325 ~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIW 404 (1395)
....++.++.++++..+|..+...... .+.|. ....|.++.|+|.| .+|+.|..-.++++|
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA-----------------~K~~q-d~~~vrsiSfHPsG-efllvgTdHp~~rlY 243 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRA-----------------FKVFQ-DTEPVRSISFHPSG-EFLLVGTDHPTLRLY 243 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHH-----------------HHHhh-ccceeeeEeecCCC-ceEEEecCCCceeEE
Confidence 998777777788888888765432111 12222 45689999999998 799999999999999
Q ss_pred eCCCCceeEEec---CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec-cCc
Q 039790 405 DDRKSTPLAVLR---PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL-KSS 480 (1395)
Q Consensus 405 Dl~sg~~l~tl~---~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~-h~~ 480 (1395)
|+.+-+|...-. .|.+ .|++|.|+ +.|++.++++ .||.|+|||--++ +|+.+|.. |++
T Consensus 244 dv~T~QcfvsanPd~qht~-ai~~V~Ys----~t~~lYvTaS-kDG~IklwDGVS~------------rCv~t~~~AH~g 305 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTG-AITQVRYS----STGSLYVTAS-KDGAIKLWDGVSN------------RCVRTIGNAHGG 305 (430)
T ss_pred eccceeEeeecCccccccc-ceeEEEec----CCccEEEEec-cCCcEEeeccccH------------HHHHHHHhhcCC
Confidence 999998876554 6777 99999999 9999888854 9999999998887 99999864 443
Q ss_pred ccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccc--------cEEEEecCCCCcC-
Q 039790 481 AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTM--------PILSLTGTTTDAS- 551 (1395)
Q Consensus 481 ~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~--------~ils~~~~~~d~~- 551 (1395)
.. ++.+.|..+|++|++.++|..|++|.+.+|. .+.+|.+.+ ..-.|.-.. |.+
T Consensus 306 se--------vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R--------~l~~YtGAg~tgrq~~rtqAvFNhtE-dyVl 368 (430)
T KOG0640|consen 306 SE--------VCSAVFTKNGKYILSSGKDSTVKLWEISTGR--------MLKEYTGAGTTGRQKHRTQAVFNHTE-DYVL 368 (430)
T ss_pred ce--------eeeEEEccCCeEEeecCCcceeeeeeecCCc--------eEEEEecCCcccchhhhhhhhhcCcc-ceEE
Confidence 32 2378999999999999999999999999875 455555441 112233332 322
Q ss_pred -cC-CCCeEEEEEcCCCcee----eecccceEEecCCCCC-eecccCCCceEEEee
Q 039790 552 -PD-GEHIVQIYCVQTQAIQ----QYALDLSQCLPPPLEN-AELEKTDSNATRAFD 600 (1395)
Q Consensus 552 -~s-~dg~V~lWdv~t~~i~----~~~~~~~~cl~~s~d~-l~~~~sd~~v~~iWD 600 (1395)
++ ..+.+.-||-.+..-. -.|-....|+.-++.+ .....+|+--.|+|=
T Consensus 369 ~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred ccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 23 2467888998886432 2344456677766654 333444666777883
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.2e-19 Score=195.44 Aligned_cols=267 Identities=15% Similarity=0.156 Sum_probs=192.0
Q ss_pred ccCCC-CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 152 PTLPP-PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~-p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
++++| ....++.+|.|++||+|++.. +|.++ + +....|.+.|.+++|+-||..
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~-~g~~~------------------------~-ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQN-SGQLV------------------------P-KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEec-CCccc------------------------c-hhhhccCCCeEEEEEccCCce
Confidence 34444 235677899999999999441 12211 1 233468899999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCC--CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 231 ICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDV--HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg--~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
+++|+.|+.+++||+.+++...+..|.++|..+.|. +.. .+|+||+.|.+|++||.+... .+..+.
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R~~~-----------pv~t~~ 154 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWV-PGMNYQCLVTGSWDKTLKFWDTRSSN-----------PVATLQ 154 (347)
T ss_pred EEeeccCCceEEEEccCCCeeeeeecccceeEEEEe-cCCCcceeEecccccceeecccCCCC-----------eeeeee
Confidence 999999999999999999999999999999999994 433 489999999999999999765 222222
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
+-. .++ +.+-....++++..+..|+++........ | ......-.-.+.||+...|.
T Consensus 155 LPe----RvY--a~Dv~~pm~vVata~r~i~vynL~n~~te--~----------------k~~~SpLk~Q~R~va~f~d~ 210 (347)
T KOG0647|consen 155 LPE----RVY--AADVLYPMAVVATAERHIAVYNLENPPTE--F----------------KRIESPLKWQTRCVACFQDK 210 (347)
T ss_pred ccc----eee--ehhccCceeEEEecCCcEEEEEcCCCcch--h----------------hhhcCcccceeeEEEEEecC
Confidence 211 111 12222334555666777777776432211 0 00011123458899999987
Q ss_pred CcEEEEEeCCCcEEEEeCCCC--ceeEEecCCCC--------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 389 TTRLASASLDGTVKIWDDRKS--TPLAVLRPYDG--------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~--------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
...+.|+-.|++-|..+..+ +.-.+|+.|.. ..|++|+|. |....|+++| .||++.+||-...
T Consensus 211 -~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh----P~hgtlvTaG-sDGtf~FWDkdar- 283 (347)
T KOG0647|consen 211 -DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH----PVHGTLVTAG-SDGTFSFWDKDAR- 283 (347)
T ss_pred -CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee----cccceEEEec-CCceEEEecchhh-
Confidence 56699999999999998887 44556777762 257889998 8889999999 8999999998765
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
..+.+.+.|...+. ++.|+.+|.+++-+.
T Consensus 284 -----------~kLk~s~~~~qpIt---------cc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 284 -----------TKLKTSETHPQPIT---------CCSFNRNGSIFAYAL 312 (347)
T ss_pred -----------hhhhccCcCCCccc---------eeEecCCCCEEEEEe
Confidence 55666666666654 488999888776543
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=5.8e-20 Score=196.52 Aligned_cols=218 Identities=17% Similarity=0.281 Sum_probs=169.8
Q ss_pred eCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCc----------------eEEeccCCCCeEEEEEeeCCCCEEEE
Q 039790 213 ISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITAL----------------RSLLRGHTQRVTDMAFFAEDVHLLAS 275 (1395)
Q Consensus 213 ~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~----------------~~~l~~H~~~V~slaf~s~dg~~LaS 275 (1395)
.-|.+.|..+.+.+ .|+|+++|+.||.|.|||++... +..-.+|.-.|.++.|.+.|...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999987 78999999999999999998631 01224688899999999999999999
Q ss_pred EECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 276 ASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 276 gs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
++.|.+++|||..+-+. .+.|
T Consensus 120 sSFDhtlKVWDtnTlQ~--------------------------a~~F--------------------------------- 140 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQE--------------------------AVDF--------------------------------- 140 (397)
T ss_pred ccccceEEEeeccccee--------------------------eEEe---------------------------------
Confidence 99999999999987541 0000
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCC--cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLT--TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~--~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
...+.|++-+|+|-.. .++|+|..|-.|++-|+.+|.+-+++.||.+ .|.+|.|+
T Consensus 141 ------------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Ws---- 197 (397)
T KOG4283|consen 141 ------------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWS---- 197 (397)
T ss_pred ------------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEec----
Confidence 1233455555555321 4888899999999999999999999999998 99999999
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc------cccccccceEEEEeCCCCEEEEEe
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL------RLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~------~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|...|++.+|+.||.||+||++... .|+..++.|...-. ..+.+-+ ..++|+.||.++++.+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRras-----------gcf~~lD~hn~k~~p~~~~n~ah~gkv-ngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRAS-----------GCFRVLDQHNTKRPPILKTNTAHYGKV-NGLAWTSDARYLASCG 265 (397)
T ss_pred cCceeEEEecCCCceEEEEEeeccc-----------ceeEEeecccCccCcccccccccccee-eeeeecccchhhhhcc
Confidence 8899988888899999999998653 45555655542100 0011111 2589999999999999
Q ss_pred CCCeEEEEEcCCCCCCC
Q 039790 508 KKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~~~~ 524 (1395)
.|..+++|+...|.+..
T Consensus 266 td~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTL 282 (397)
T ss_pred CccceEEeecccCcccc
Confidence 99999999999987643
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=8.6e-20 Score=206.35 Aligned_cols=296 Identities=16% Similarity=0.221 Sum_probs=209.6
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeee-eCCCCCEEEEEEecCCCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKY-ISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l-~~h~~~V~~va~Spdg~~ 230 (1395)
+..+++...+.+++.+++|--|++.+ |+.. -|.+... +. ....+.+...- ++|...|.++++++||+|
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~t--gk~~-----~~i~~~~---ev-~k~~~~~~k~~r~~h~keil~~avS~Dgky 216 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLT--GKKD-----RYIIERD---EV-LKSHGNPLKESRKGHVKEILTLAVSSDGKY 216 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhc--Cccc-----ccccccc---hh-hhhccCCCCcccccccceeEEEEEcCCCcE
Confidence 56677778999999999999999542 2211 0111110 00 00011122111 489999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
||+|+.|..|.||+..+.. +..|.+|.+.|.+++| -...+.|++++.|++|++|++.... -+.+
T Consensus 217 latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~f-r~gt~~lys~s~Drsvkvw~~~~~s--------------~vet 281 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAF-RKGTSELYSASADRSVKVWSIDQLS--------------YVET 281 (479)
T ss_pred EEecCCCceEEEecCcccchhhcccccccceeeeee-ecCccceeeeecCCceEEEehhHhH--------------HHHH
Confidence 9999999999999999974 7789999999999999 7777889999999999999998765 2344
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
+.+|.+.|..|.....+..+-++|.|.++.+|.... .. ..++.+|.+.+-|++|-.+
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-es--------------------qlifrg~~~sidcv~~In~-- 338 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ES--------------------QLIFRGGEGSIDCVAFIND-- 338 (479)
T ss_pred HhCCccceeeechhcccceEEeccccceeEEEeccc-cc--------------------eeeeeCCCCCeeeEEEecc--
Confidence 556677777776666665444444666666665521 11 3567789999999999876
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEec-CCC--C--------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLR-PYD--G--------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~--~--------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
..|++||.||.|.+|++.+.+++.+.. +|. . .||++|+.. |....+++ |+++|.||+|-+..+
T Consensus 339 ~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i----~~sdL~as-GS~~G~vrLW~i~~g- 412 (479)
T KOG0299|consen 339 EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI----PGSDLLAS-GSWSGCVRLWKIEDG- 412 (479)
T ss_pred cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEec----ccCceEEe-cCCCCceEEEEecCC-
Confidence 589999999999999999999988765 221 1 189999998 77777776 669999999999876
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeE-EEEEcCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAI-YAIHMDY 519 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I-~iWdl~~ 519 (1395)
....+.+..+.. .+ |+..++|+.+|.+|++|. ....+ +.|-+..
T Consensus 413 -------~r~i~~l~~ls~---------~G-fVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~ 458 (479)
T KOG0299|consen 413 -------LRAINLLYSLSL---------VG-FVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKS 458 (479)
T ss_pred -------ccccceeeeccc---------cc-EEEEEEEccCCCEEEEecccccccceeeEeec
Confidence 111233333332 12 344788999999666653 33333 3444433
No 106
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-18 Score=189.44 Aligned_cols=278 Identities=16% Similarity=0.173 Sum_probs=206.9
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+..+..+..|++++.|.+++++|+. .++.+.++..+...|..+.|....+.+
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~----------------------------~g~~~~ti~skkyG~~~~~Fth~~~~~ 71 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSL----------------------------SGKQVKTINSKKYGVDLACFTHHSNTV 71 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcC----------------------------CCceeeEeecccccccEEEEecCCceE
Confidence 4556666788888888888888843 224445555666777888888888888
Q ss_pred EEEEc--CCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 232 CYGLK--LGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 232 asGs~--DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
..++. |.+||..++.+.. ++.|.||...|.+|+. +|-++.++|++.|++||+||++..+|..
T Consensus 72 i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~-sP~~d~FlS~S~D~tvrLWDlR~~~cqg-------------- 136 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSV-SPKDDTFLSSSLDKTVRLWDLRVKKCQG-------------- 136 (311)
T ss_pred EEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEe-cCCCCeEEecccCCeEEeeEecCCCCce--------------
Confidence 87776 8999999999875 8899999999999999 7777999999999999999999776321
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
...- ..-..++|+|.|- +++++.+. .|.++|.+..+++- +.. ...-.+.....+.|.||+|
T Consensus 137 ~l~~--~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgP-------F~t--------f~i~~~~~~ew~~l~FS~d 198 (311)
T KOG1446|consen 137 LLNL--SGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGP-------FTT--------FSITDNDEAEWTDLEFSPD 198 (311)
T ss_pred EEec--CCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCC-------cee--------EccCCCCccceeeeEEcCC
Confidence 1111 1223689999985 55555554 67777776654431 100 1111134567899999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCC--CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH--PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~--~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
| ++|+.+...+.+++.|.-+|..+.++.++... --.+.+|+ ||+++++++. .||+|.+|+++++
T Consensus 199 G-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft----Pds~Fvl~gs-~dg~i~vw~~~tg-------- 264 (311)
T KOG1446|consen 199 G-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT----PDSKFVLSGS-DDGTIHVWNLETG-------- 264 (311)
T ss_pred C-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC----CCCcEEEEec-CCCcEEEEEcCCC--------
Confidence 9 78888889999999999999999999887642 22578898 9999999854 9999999999998
Q ss_pred cccccEEEEEecc-CcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 466 IESWKCTQTLELK-SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 466 ~~~~~~l~tl~~h-~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..+..+.+. ...+ .++.|.|.-..++++ +..+-+|-...
T Consensus 265 ----~~v~~~~~~~~~~~---------~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 265 ----KKVAVLRGPNGGPV---------SCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred ----cEeeEecCCCCCCc---------cccccCCceeeeeec--CceEEEEeccc
Confidence 888888874 3332 246788877777666 45677786543
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-18 Score=177.74 Aligned_cols=258 Identities=14% Similarity=0.165 Sum_probs=190.3
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC------CceEEeccCCCCeEEEEEee---CCCCEEEEEE-C
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT------ALRSLLRGHTQRVTDMAFFA---EDVHLLASAS-V 278 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~------~~~~~l~~H~~~V~slaf~s---~dg~~LaSgs-~ 278 (1395)
.++-+.|.+.|+|.+|+++|.+|++|+.|.+|++..++. |....|.-|.+.|.+++|.. ..+.+|++++ .
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 345567899999999999999999999999999987654 34557888999999999941 2355777765 4
Q ss_pred CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
|+.|++-|...|. .+..+.+|.+.+ +++...++.+|++|+.+..+++|+.+.......
T Consensus 162 dc~iy~tdc~~g~--------------~~~a~sghtghi--lalyswn~~m~~sgsqdktirfwdlrv~~~v~~------ 219 (350)
T KOG0641|consen 162 DCKIYITDCGRGQ--------------GFHALSGHTGHI--LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNT------ 219 (350)
T ss_pred cceEEEeecCCCC--------------cceeecCCcccE--EEEEEecCcEEEccCCCceEEEEeeeccceeee------
Confidence 7888888988887 344555555554 333344557889999888888887665432100
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
++... +--.-....|.+++..|.| ++|++|-.|....+||++.++.++.|..|.. .|.||.|+ |...|
T Consensus 220 ---l~~~~---~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsa-dir~vrfs----p~a~y 287 (350)
T KOG0641|consen 220 ---LDNDF---HDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFS----PGAHY 287 (350)
T ss_pred ---ccCcc---cCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCcc-ceeEEEeC----CCceE
Confidence 00000 0000123579999999998 8999999999999999999999999999997 99999999 88889
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
|++++ .|..|++-|+...- ...-.+.....|..... .+.|.+...-+++.+.|.++.+|.++
T Consensus 288 llt~s-yd~~ikltdlqgdl--------a~el~~~vv~ehkdk~i---------~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 288 LLTCS-YDMKIKLTDLQGDL--------AHELPIMVVAEHKDKAI---------QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEec-ccceEEEeecccch--------hhcCceEEEEeccCceE---------EEEecCccceeeeccCcceEEEeccC
Confidence 99965 99999999986540 00011222333433322 27788888888999999999999864
No 108
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.5e-20 Score=206.38 Aligned_cols=282 Identities=16% Similarity=0.196 Sum_probs=202.1
Q ss_pred eeeeeCCCCCEEEEEEecCC-CEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 209 ITKYISDPGLVLGRQIAVNR-NYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg-~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
+..+.||.+.|.|++=+|+. ..+++|+.||.|+|||+... +..+|..|.+.|..|++ . ...++++|.|.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v-~--~~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICV-T--QTSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEe-c--ccceEEecCCcceeeee
Confidence 34568999999999999977 78999999999999999886 68899999999999999 3 37799999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
+.... +.++. .+..+..+.-+..+. ++++| +..|-+||.....
T Consensus 136 ~~~~p---------------~~til-g~s~~~gIdh~~~~~-~FaTc-Ge~i~IWD~~R~~------------------- 178 (433)
T KOG0268|consen 136 IDGPP---------------LHTIL-GKSVYLGIDHHRKNS-VFATC-GEQIDIWDEQRDN------------------- 178 (433)
T ss_pred ccCCc---------------ceeee-ccccccccccccccc-ccccc-CceeeecccccCC-------------------
Confidence 87521 11111 122222333322222 33322 3345555543321
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
++..+.-..+.|.++.|+|-....|++|..|+.|.+||+|.+.+++.+.-.. .-+.|+|+ |.+-.++ +|+.|
T Consensus 179 -Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~Iswn----PeafnF~-~a~ED 250 (433)
T KOG0268|consen 179 -PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWN----PEAFNFV-AANED 250 (433)
T ss_pred -ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec--cccceecC----cccccee-ecccc
Confidence 2455555667899999999887899999999999999999999998776432 57899999 8554444 46699
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC--
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA-- 524 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~-- 524 (1395)
..++.||++.- ...+..+.+|.+.+.. +.|||.|.-+++|+.|.+|+||.++.+..-.
T Consensus 251 ~nlY~~DmR~l-----------~~p~~v~~dhvsAV~d---------VdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY 310 (433)
T KOG0268|consen 251 HNLYTYDMRNL-----------SRPLNVHKDHVSAVMD---------VDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY 310 (433)
T ss_pred ccceehhhhhh-----------cccchhhcccceeEEE---------eccCCCcchhccccccceEEEeecCCCcchhhh
Confidence 99999999865 1456667777766544 8999999999999999999999998876422
Q ss_pred -Ccceeeeeeee-ccccEEEEecCCCCcCcCCCCeEEEEEcCC
Q 039790 525 -STRMDYIAEFT-VTMPILSLTGTTTDASPDGEHIVQIYCVQT 565 (1395)
Q Consensus 525 -~~~~~~i~~f~-~~~~ils~~~~~~d~~~s~dg~V~lWdv~t 565 (1395)
..+|..+.... .....+.+.| ++|+.|++|....
T Consensus 311 htkRMq~V~~Vk~S~Dskyi~SG-------Sdd~nvRlWka~A 346 (433)
T KOG0268|consen 311 HTKRMQHVFCVKYSMDSKYIISG-------SDDGNVRLWKAKA 346 (433)
T ss_pred hHhhhheeeEEEEeccccEEEec-------CCCcceeeeecch
Confidence 12222221111 1122333333 4588999997554
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.2e-20 Score=207.01 Aligned_cols=265 Identities=12% Similarity=0.146 Sum_probs=205.4
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
..+++|+.||.|++|++. ...++.+|..|.+.|.++.+.- ..+++++.|.
T Consensus 80 s~~aSGs~DG~VkiWnls----------------------------qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLS----------------------------QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred hhhhccccCceEEEEehh----------------------------hhhhhheeecccCceeeEEecc--cceEEecCCc
Confidence 788999999999999943 2256788999999999998877 6788999999
Q ss_pred eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCcc
Q 039790 239 NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHP 318 (1395)
Q Consensus 239 ~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~ 318 (1395)
+|+.|.++....+++.+. ..+.+|.- ...++.++|||.+ |-|||..... .++.+.-+-..+.
T Consensus 130 tvK~wk~~~~p~~tilg~-s~~~gIdh-~~~~~~FaTcGe~--i~IWD~~R~~--------------Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGK-SVYLGIDH-HRKNSVFATCGEQ--IDIWDEQRDN--------------PVSSMSWGADSIS 191 (433)
T ss_pred ceeeeeccCCcceeeecc-cccccccc-ccccccccccCce--eeecccccCC--------------ccceeecCCCcee
Confidence 999999988767666653 35777776 5667889999974 9999997655 3333444556678
Q ss_pred EEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC
Q 039790 319 RVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL 397 (1395)
Q Consensus 319 ~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~ 397 (1395)
++.|+|-...+|++| +++.|+++|.+.... ++.+. .+-.-+.|+|+|.+ ..|++|+.
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~P--------------------l~KVi-~~mRTN~IswnPea-fnF~~a~E 249 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASP--------------------LKKVI-LTMRTNTICWNPEA-FNFVAANE 249 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCc--------------------cceee-eeccccceecCccc-cceeeccc
Confidence 999999999888887 677788887754321 11110 22345789999966 89999999
Q ss_pred CCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 398 DGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 398 Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
|..++.||++.- .++..+.+|.. .|.+|+|+ |.|+-+++++ .|.+|+||.++.+ .....+
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvs-AV~dVdfs----ptG~Efvsgs-yDksIRIf~~~~~------------~SRdiY- 310 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVS-AVMDVDFS----PTGQEFVSGS-YDKSIRIFPVNHG------------HSRDIY- 310 (433)
T ss_pred cccceehhhhhhcccchhhcccce-eEEEeccC----CCcchhcccc-ccceEEEeecCCC------------cchhhh-
Confidence 999999999985 78999999987 99999999 9999999965 9999999999876 211111
Q ss_pred ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 477 ~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|... +.. +-++.||.|..++++|++|+.|++|.-..
T Consensus 311 -htkR-----Mq~-V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 311 -HTKR-----MQH-VFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred -hHhh-----hhe-eeEEEEeccccEEEecCCCcceeeeecch
Confidence 1111 111 12589999999999999999999999764
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.2e-19 Score=212.76 Aligned_cols=270 Identities=19% Similarity=0.246 Sum_probs=202.3
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCceEEecc-CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITALRSLLRG-HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~-H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
+.|+ ..+.||+|.. ..|++|+..++.+..+.. +.+.|+++.| +++|.+|+.|..+|.|.|||..+.+
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~w-s~~G~~LavG~~~g~v~iwD~~~~k--------- 250 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKW-SPDGSHLAVGTSDGTVQIWDVKEQK--------- 250 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEE-CCCCCEEEEeecCCeEEEEehhhcc---------
Confidence 5677 4567887764 589999999997554433 4889999999 9999999999999999999999876
Q ss_pred cceEEEEEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe
Q 039790 301 GKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI 379 (1395)
Q Consensus 301 ~~~i~~l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V 379 (1395)
.+..+.. |...|-+++|. +..+..+..++.|+.+|.+..... ...+.+|...|
T Consensus 251 -----~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~-------------------~~~~~~H~qeV 304 (484)
T KOG0305|consen 251 -----KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV-------------------VSTLQGHRQEV 304 (484)
T ss_pred -----ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh-------------------hhhhhccccee
Confidence 2333344 78888999998 333444445666666666443221 12367899999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC-cEEEEE-ecCCCeEEEEECCCC
Q 039790 380 TELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH-IVLITG-GPLNRELKIWASAEE 457 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg-~~L~s~-Gs~Dg~I~IWDl~tg 457 (1395)
..+.|++|+ .+||+|+.|+.+.|||.....++..+..|.+ .|.+++|+ |-. ..||+| |+.|++|++||..++
T Consensus 305 CgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awc----P~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 305 CGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWC----PWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred eeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccce-eeeEeeeC----CCccCceEEcCCCcccEEEEEEcCCC
Confidence 999999999 8999999999999999988999999999998 99999999 543 455554 457999999999998
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE--EeCCCeEEEEEcCCCCCCCCcceeeeeeee
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA--NAKKNAIYAIHMDYGPNPASTRMDYIAEFT 535 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS--gs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~ 535 (1395)
.++..+.... .++.+.|++..+-|++ |..++.|.||++.+ +..+..+.
T Consensus 379 ------------~~i~~vdtgs----------QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--------~~~~~~l~ 428 (484)
T KOG0305|consen 379 ------------ARIDSVDTGS----------QVCSLIWSKKYKELLSTHGYSENQITLWKYPS--------MKLVAELL 428 (484)
T ss_pred ------------cEecccccCC----------ceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--------cceeeeec
Confidence 7777665433 2346889888854444 33678899999876 33455555
Q ss_pred cc-ccEEEEecCCCCcC----cCCCCeEEEEEcCCC
Q 039790 536 VT-MPILSLTGTTTDAS----PDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 536 ~~-~~ils~~~~~~d~~----~s~dg~V~lWdv~t~ 566 (1395)
+| ..++.+...+ |.. +++|.++++|++-..
T Consensus 429 gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 GHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 55 2344444444 432 468899999988774
No 111
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=6.1e-18 Score=195.93 Aligned_cols=270 Identities=9% Similarity=0.023 Sum_probs=184.8
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE-EEEEcC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI-CYGLKL 237 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L-asGs~D 237 (1395)
..+++++.|+.|++||... + ..+..+..+ ..+.+++|+++|+++ ++++.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t--~--------------------------~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~ 52 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT--L--------------------------EVTRTFPVG-QRPRGITLSKDGKLLYVCASDS 52 (300)
T ss_pred cEEEEecCCCEEEEEECCC--C--------------------------ceEEEEECC-CCCCceEECCCCCEEEEEECCC
Confidence 3577889999999999431 1 223334433 335678999999977 566788
Q ss_pred CeEEEEECCCCce-EEeccCCCCeEEEEEeeCCCCEEE-EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 238 GNIRILNIITALR-SLLRGHTQRVTDMAFFAEDVHLLA-SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 238 G~IrIWd~~~~~~-~~l~~H~~~V~slaf~s~dg~~La-Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
+.|++||..++.. ..+..+.. +..++| +++++.++ +++.|+.|++||+.++. .+..+.. ..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~-~~~g~~l~~~~~~~~~l~~~d~~~~~--------------~~~~~~~-~~ 115 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPD-PELFAL-HPNGKILYIANEDDNLVTVIDIETRK--------------VLAEIPV-GV 115 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCC-ccEEEE-CCCCCEEEEEcCCCCeEEEEECCCCe--------------EEeEeeC-CC
Confidence 9999999998753 44544433 567888 78888665 45668999999998765 1222221 23
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE-EE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL-AS 394 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L-aS 394 (1395)
.+..++|+|++..++++..++..+.++....+.. ...+. ....+.+++|++++ .+| ++
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-------------------~~~~~-~~~~~~~~~~s~dg-~~l~~~ 174 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-------------------VDNVL-VDQRPRFAEFTADG-KELWVS 174 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-------------------EEEEE-cCCCccEEEECCCC-CEEEEE
Confidence 3567999999987777766655555544322211 11111 23346789999998 555 56
Q ss_pred EeCCCcEEEEeCCCCceeEEecCCCC------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 395 ASLDGTVKIWDDRKSTPLAVLRPYDG------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 395 gs~Dg~IrIWDl~sg~~l~tl~~h~~------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+..++.|++||+.+++++..+..+.. .....++|+ |++++++++...++.|.+||+.++
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s----~dg~~~~~~~~~~~~i~v~d~~~~----------- 239 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT----KDGKTAFVALGPANRVAVVDAKTY----------- 239 (300)
T ss_pred cCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC----CCCCEEEEEcCCCCeEEEEECCCC-----------
Confidence 66799999999999988877653311 124578898 999986665446778999999876
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE-eCCCeEEEEEcCCCC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN-AKKNAIYAIHMDYGP 521 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg-s~Dg~I~iWdl~~g~ 521 (1395)
+.+..+.. ...+ ..++|+++|.+|+++ +.+|.|++||+..++
T Consensus 240 -~~~~~~~~-~~~~---------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 240 -EVLDYLLV-GQRV---------WQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred -cEEEEEEe-CCCc---------ceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 66655432 2121 258999999998876 568999999998754
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.8e-19 Score=192.69 Aligned_cols=231 Identities=16% Similarity=0.209 Sum_probs=178.1
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC--EEE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN--YIC 232 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~--~La 232 (1395)
--.++.+++||.|.+|++||... ...+..+-.|.+.|+++.|.++-. .|.
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k----------------------------~~qlg~ll~HagsitaL~F~~~~S~shLl 101 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRK----------------------------RKQLGILLSHAGSITALKFYPPLSKSHLL 101 (362)
T ss_pred EecceeEeccCCCCcEEEEeccc----------------------------hhhhcceeccccceEEEEecCCcchhhee
Confidence 33458899999999999999431 133455667999999999999775 899
Q ss_pred EEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 233 YGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 233 sGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
+|+.||.|.||+.... ++..+++|.+.|++|++ .|.+++-++.+.|+.++.||+..|+. .+..
T Consensus 102 S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr~---------------a~v~ 165 (362)
T KOG0294|consen 102 SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSI-HPSGKLALSVGGDQVLRTWNLVRGRV---------------AFVL 165 (362)
T ss_pred eecCCCcEEEEEcCCeEEeeeecccccccceeEe-cCCCceEEEEcCCceeeeehhhcCcc---------------ceee
Confidence 9999999999999987 58899999999999999 88999999999999999999999871 0111
Q ss_pred CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 312 DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 312 ~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.-....+.|.|+|.|.++++++.+ .|-+|-..... . ...+ .....+.|+.|-.. ..
T Consensus 166 ~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~---v-----------------~~~i-~~~~r~l~~~~l~~--~~ 221 (362)
T KOG0294|consen 166 NLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS---V-----------------FREI-ENPKRILCATFLDG--SE 221 (362)
T ss_pred ccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHh---H-----------------hhhh-hccccceeeeecCC--ce
Confidence 112233459999999876665544 44444332210 0 0111 12245777777643 69
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|++|..|+.|++||..++.++..|.+|.. .|.++.+-.. |++.+|++++ .||.|+|||++..
T Consensus 222 L~vG~d~~~i~~~D~ds~~~~~~~~AH~~-RVK~i~~~~~--~~~~~lvTaS-SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDTPLTEFLAHEN-RVKDIASYTN--PEHEYLVTAS-SDGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEeccCCCccceeeecchh-heeeeEEEec--CCceEEEEec-cCceEEEEEcccc
Confidence 99999999999999999999999999998 9999996533 7788999987 8999999999765
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.3e-19 Score=189.97 Aligned_cols=247 Identities=17% Similarity=0.187 Sum_probs=185.2
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CC
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NR 228 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg 228 (1395)
...+.+-+..|+|++.|++||++.+.. + | ...++.+|.||.+.|+.++|.. -|
T Consensus 16 da~lDyygkrlATcsSD~tVkIf~v~~-n------------------~------~s~ll~~L~Gh~GPVwqv~wahPk~G 70 (299)
T KOG1332|consen 16 DAQLDYYGKRLATCSSDGTVKIFEVRN-N------------------G------QSKLLAELTGHSGPVWKVAWAHPKFG 70 (299)
T ss_pred HhhhhhhcceeeeecCCccEEEEEEcC-C------------------C------CceeeeEecCCCCCeeEEeecccccC
Confidence 345566678999999999999998331 1 1 1256778999999999999987 89
Q ss_pred CEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 229 NYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
.+||++++||.|.||.-.++ +.+.+..|...|++|+|.+. -|-.|++++.||.|.|.+++.... .
T Consensus 71 ~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-----------w 139 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-----------W 139 (299)
T ss_pred cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-----------c
Confidence 99999999999999999988 46678899999999999432 256899999999999999987521 1
Q ss_pred EEEEEecCCCCCccEEEEeCC---C-----------CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 305 VAIQILADGDSVHPRVCWHPH---K-----------QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~---~-----------~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
..-++...|...+++++|.|. | .+|+.+|.++.+.+|.. ..+. |.+ -+
T Consensus 140 ~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~-~~~~--------------w~~---e~ 201 (299)
T KOG1332|consen 140 TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF-DSDS--------------WKL---ER 201 (299)
T ss_pred cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec-CCcc--------------hhh---hh
Confidence 123455667888999999986 3 23555555555555543 2221 111 24
Q ss_pred EEcccCCCeEEEEEecCC---CcEEEEEeCCCcEEEEeCCCC-c--eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 371 LVGKHDGEITELSMCQWL---TTRLASASLDGTVKIWDDRKS-T--PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg---~~~LaSgs~Dg~IrIWDl~sg-~--~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
.+.+|.+.|++++|.|.- ..+||+||.||+|.||-.+.- . ....++.... .++.+.|| ..|..|+.+|
T Consensus 202 ~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS----~sGn~LaVs~- 275 (299)
T KOG1332|consen 202 TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWS----LSGNILAVSG- 275 (299)
T ss_pred hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc-ceEEEEEe----ccccEEEEec-
Confidence 478899999999999974 248999999999999976521 1 1112233344 89999999 9999999988
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.|+.|.+|--...
T Consensus 276 GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 276 GDNKVTLWKENVD 288 (299)
T ss_pred CCcEEEEEEeCCC
Confidence 8999999975443
No 114
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=7.9e-19 Score=205.08 Aligned_cols=303 Identities=13% Similarity=0.179 Sum_probs=212.8
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCC----CceEEeccCCCCeEEEEEeeCC----------CCEEEEEECCCcEEE
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIIT----ALRSLLRGHTQRVTDMAFFAED----------VHLLASASVDGRFFI 284 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~----~~~~~l~~H~~~V~slaf~s~d----------g~~LaSgs~DgtV~I 284 (1395)
.-.+.|.+....|.+...|..|+|||++. |+...+--|...||++.-.+-+ ...|+||+.|++||+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 34567998889999999999999999987 3566777899999998763211 236999999999999
Q ss_pred EECCCCCCCCCC--cccccceE---------------------EEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEE
Q 039790 285 WNITEGPDEEDK--PQILGKIV---------------------VAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKI 341 (1395)
Q Consensus 285 Wdl~tg~~~~~~--~~~~~~~i---------------------~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~ 341 (1395)
||+..+..-..+ ..+....+ ....-.-+....+.+++.+|+++++.++...|.+.++
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 999874311110 00000000 0001111234567899999999998888888888888
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC--CCcEEEEEeCCCcEEEEeCCC-CceeEEecCC
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW--LTTRLASASLDGTVKIWDDRK-STPLAVLRPY 418 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd--g~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h 418 (1395)
+...... ...+..|...|.|+.|+.- +.++||+++.|+.|.|||+.. -.+++++.+|
T Consensus 487 ~Lq~l~~--------------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~H 546 (1080)
T KOG1408|consen 487 DLQELEY--------------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGH 546 (1080)
T ss_pred Eehhhhh--------------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccc
Confidence 8755432 3456789999999999853 235899999999999999864 4677788888
Q ss_pred CCCCeeEEEEeecC---------------------------------------------CCCCcEEEEEecCCCeEEEEE
Q 039790 419 DGHPVNCVTFLIGP---------------------------------------------HPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~---------------------------------------------~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
.. .|++|.|.... .|..++++++| .|+.|+|||
T Consensus 547 Ss-sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c-QDrnirif~ 624 (1080)
T KOG1408|consen 547 SS-SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC-QDRNIRIFD 624 (1080)
T ss_pred cc-ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe-cccceEEEe
Confidence 76 88888875111 13345777766 899999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeee
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAE 533 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~ 533 (1395)
+.++ +.++.|++..+.... .+ .+...|.|.||++.+.|.++.++|+-+|+ ++.....
T Consensus 625 i~sg------------Kq~k~FKgs~~~eG~----lI--Kv~lDPSgiY~atScsdktl~~~Df~sgE-----cvA~m~G 681 (1080)
T KOG1408|consen 625 IESG------------KQVKSFKGSRDHEGD----LI--KVILDPSGIYLATSCSDKTLCFVDFVSGE-----CVAQMTG 681 (1080)
T ss_pred cccc------------ceeeeecccccCCCc----eE--EEEECCCccEEEEeecCCceEEEEeccch-----hhhhhcC
Confidence 9888 899999886654221 11 47788999999999999999999999876 3222222
Q ss_pred eeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCc
Q 039790 534 FTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQA 567 (1395)
Q Consensus 534 f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~ 567 (1395)
+.....-+.|...- ..+ .+|||+|.||.+-...
T Consensus 682 HsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred cchheeeeeecccc-hhheeecCCceEEEEECchhH
Confidence 22222223333332 122 4799999999886643
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.7e-19 Score=193.32 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=183.7
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC------ce-------------------------------E
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA------LR-------------------------------S 251 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~------~~-------------------------------~ 251 (1395)
+..+++|.+.|+|++|+.||++||+++.|++||||+++.- ++ .
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3568899999999999999999999999999999998641 00 0
Q ss_pred Ee-----------------------ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 252 LL-----------------------RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 252 ~l-----------------------~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
.+ +.|.-.|.++-. ..++.+|++|+.|.+|.+|+++ |+ .+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq--------------~L~ 222 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQ--------------LLQ 222 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-Cc--------------eee
Confidence 00 113334445555 5667899999999999999999 66 334
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
.+.......+..+.+|+|.+++++|..--+.+|.......+ .+ .....+..+.||...|..++|+++.
T Consensus 223 ~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG-------~f-----qev~rvf~LkGH~saV~~~aFsn~S 290 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG-------TF-----QEVKRVFSLKGHQSAVLAAAFSNSS 290 (420)
T ss_pred eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc-------ch-----hhhhhhheeccchhheeeeeeCCCc
Confidence 44444445567899999999999999988888876433222 11 1223356788999999999999998
Q ss_pred CcEEEEEeCCCcEEEEeCCC-------CceeEEec----CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 389 TTRLASASLDGTVKIWDDRK-------STPLAVLR----PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~s-------g~~l~tl~----~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+.++|.|.||++||||+.- .+.+++.. ...+ ....+..+ |.|+.|+.+ ....|++|..+++
T Consensus 291 -~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~-~p~RL~ls----P~g~~lA~s--~gs~l~~~~se~g 362 (420)
T KOG2096|consen 291 -TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS-EPVRLELS----PSGDSLAVS--FGSDLKVFASEDG 362 (420)
T ss_pred -ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC-CceEEEeC----CCCcEEEee--cCCceEEEEcccC
Confidence 8999999999999999752 12333331 1223 44589999 999999874 4678999999888
Q ss_pred CCCCCCCCcccccEEEEEe-ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 458 EGWLLPSDIESWKCTQTLE-LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
+..-+++ .|+..+. +++|+++|+++++++ |..++++.-
T Consensus 363 ------------~~~~~~e~~h~~~Is---------~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 363 ------------KDYPELEDIHSTTIS---------SISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ------------ccchhHHHhhcCcee---------eEEecCCCcEEeeec-ceeeeeecC
Confidence 3333332 3444432 599999999999987 667888774
No 116
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.8e-19 Score=199.65 Aligned_cols=286 Identities=17% Similarity=0.249 Sum_probs=213.7
Q ss_pred cCCCEEEEE---EcCCeEEEEECCC-C----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 226 VNRNYICYG---LKLGNIRILNIIT-A----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 226 pdg~~LasG---s~DG~IrIWd~~~-~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
.+.+|||.. +..|...|.-+.. | ..-.+.||+++|.+++|++.+.+.|||||.|.+|.||++-.+....
T Consensus 42 vNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~--- 118 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR--- 118 (472)
T ss_pred cCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc---
Confidence 466777653 2234444444432 3 2346789999999999988899999999999999999998765222
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
.....+..+.+|...|-.+.|||....++.++..+..+.+|....+.. +..+. |.+
T Consensus 119 ----~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea-------------------li~l~-hpd 174 (472)
T KOG0303|consen 119 ----DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA-------------------LITLD-HPD 174 (472)
T ss_pred ----CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce-------------------eeecC-CCC
Confidence 122345667788888999999999888877777666666666554432 34444 999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec---CCCeEEEEEC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP---LNRELKIWAS 454 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl 454 (1395)
.|++++|+.|| .+|++.+.|+.|||||.++++.+..-.+|.|..-..+.|. .+|. ++++|. .++.+-|||.
T Consensus 175 ~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl----~~g~-i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 175 MVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL----ASGK-IFTTGFSRMSERQIALWDP 248 (472)
T ss_pred eEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEe----ccCc-eeeeccccccccceeccCc
Confidence 99999999999 8999999999999999999999999999998788888998 7888 666662 5789999998
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEE-EEEeCCCeEEEEEcCCCCCCCCcceeeeee
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFL-LANAKKNAIYAIHMDYGPNPASTRMDYIAE 533 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~ 533 (1395)
.+- +..-.+.+++...+.. .=.|.+|..+| ++|-.|+.||.|.+... .+.++|+..
T Consensus 249 ~nl---------~eP~~~~elDtSnGvl----------~PFyD~dt~ivYl~GKGD~~IRYyEit~d----~P~~hyln~ 305 (472)
T KOG0303|consen 249 NNL---------EEPIALQELDTSNGVL----------LPFYDPDTSIVYLCGKGDSSIRYFEITNE----PPFVHYLNT 305 (472)
T ss_pred ccc---------cCcceeEEeccCCceE----------EeeecCCCCEEEEEecCCcceEEEEecCC----CceeEEecc
Confidence 765 3335556666555432 12345666655 55668999999999763 468999999
Q ss_pred eeccccEEEEecCCCCcC-cCCCCeEEEEEcCCCc
Q 039790 534 FTVTMPILSLTGTTTDAS-PDGEHIVQIYCVQTQA 567 (1395)
Q Consensus 534 f~~~~~ils~~~~~~d~~-~s~dg~V~lWdv~t~~ 567 (1395)
|....|..-+......++ .+.....++|.+.+..
T Consensus 306 f~S~epQRG~g~mPKRGl~Vs~cEI~rfyKl~~~~ 340 (472)
T KOG0303|consen 306 FSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERK 340 (472)
T ss_pred cccCCccccccccccccccchHHHHHHHHHhhcce
Confidence 999988888877775555 2344556778777773
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=210.70 Aligned_cols=244 Identities=16% Similarity=0.158 Sum_probs=193.0
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-c-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-L-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
.|....+.++|.++|.+|++++.||.|++|+...- . -..+.-|...|.+++. ++++|++|+.+++|.+|.+..+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCCC
Confidence 58888999999999999999999999999997664 2 2233337788888887 66799999999999999999887
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.. .+ +....-.+.+++|+.+|..+++++.+-.|.+++...... ...
T Consensus 88 ~~--------~i------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~--------------------~~~ 133 (933)
T KOG1274|consen 88 ED--------TI------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ--------------------EKV 133 (933)
T ss_pred cc--------ce------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch--------------------hee
Confidence 21 11 122234567899999998777777777777776544322 577
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC-------CCCeeEEEEeecCCCCCcEEEEEec
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD-------GHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-------~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+.+|++.|.+|.|+|.+ ++||+.+.||.|+|||+.++.+..++.+-. ...+..++|+ |+|..|+..+
T Consensus 134 lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~----Pk~g~la~~~- 207 (933)
T KOG1274|consen 134 LRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH----PKGGTLAVPP- 207 (933)
T ss_pred ecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeec----CCCCeEEeec-
Confidence 88999999999999999 899999999999999999998888776421 2267889998 9977777767
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.|++|++|+..+. .....|....... . ...+.|+|+|.|||+++.||.|-|||+++
T Consensus 208 ~d~~Vkvy~r~~w------------e~~f~Lr~~~~ss-----~--~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 208 VDNTVKVYSRKGW------------ELQFKLRDKLSSS-----K--FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCeEEEEccCCc------------eeheeeccccccc-----c--eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 8999999998655 6666665433211 1 23699999999999999999999999986
No 118
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.5e-18 Score=185.82 Aligned_cols=280 Identities=17% Similarity=0.157 Sum_probs=194.6
Q ss_pred eCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEee-CCCCEEEEEECCCcEEEEE
Q 039790 213 ISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~IWd 286 (1395)
.+|.+.|.|+.|...|+++|+|+.|++|+|||.+.. +....+.|.+.|+.|.|.+ .-|+.+|+|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 478899999999999999999999999999997543 4668899999999999954 4699999999999999998
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-eEEEEEeCCeEEEE-EcCCCCccccccCCCCCccCccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-EILMLAIGNRILKI-DSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-~lla~g~~~~ii~~-d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
-.... .......++ ...++.+....|+.|+|.|..- ..+++++.++++++ ...... .+..|.
T Consensus 90 E~~~~----~~~~~~~Wv-~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-----------nLs~W~ 153 (361)
T KOG2445|consen 90 EQEKS----EEAHGRRWV-RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-----------NLSQWT 153 (361)
T ss_pred ecccc----cccccceeE-EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-----------ccccch
Confidence 64222 111122344 3455667788899999999643 44555555555554 433322 233344
Q ss_pred cccceE----EEcccCCCeEEEEEecCC--CcEEEEEeCC-----CcEEEEeCCCC----ceeEEecCCCCCCeeEEEEe
Q 039790 365 LINGVQ----LVGKHDGEITELSMCQWL--TTRLASASLD-----GTVKIWDDRKS----TPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 365 ~~~~~~----~l~~h~~~V~slafspdg--~~~LaSgs~D-----g~IrIWDl~sg----~~l~tl~~h~~~~V~sV~fs 429 (1395)
+...++ ....+.....|+.|++.- ..+||.|+.+ +.++||....+ ..+.++.+|.. +|+.|+|.
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wA 232 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWA 232 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeec
Confidence 433332 223466778999998642 2478888876 57999975443 45567889987 99999999
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCC-----CCCCCCc---ccccEEEEEeccCcccccccccccceEEEEeCCCC
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEG-----WLLPSDI---ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~-----~~~~~~~---~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
|...-.-..|++++ .|| |+||.+..... ..+..+. -.-+.+..|..|.+.+.. +.|.-.|.
T Consensus 233 Pn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr---------v~wNmtGt 301 (361)
T KOG2445|consen 233 PNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR---------VRWNMTGT 301 (361)
T ss_pred cccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE---------EEEeeeee
Confidence 43222233555554 999 99999985321 1111111 112344556677766543 88999999
Q ss_pred EEEEEeCCCeEEEEEcCCC
Q 039790 502 FLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 502 ~LaSgs~Dg~I~iWdl~~g 520 (1395)
+|.+.|.||.||+|.-.+.
T Consensus 302 iLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEeecCCCceeeehhhhhh
Confidence 9999999999999997763
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.82 E-value=9.2e-18 Score=200.95 Aligned_cols=339 Identities=13% Similarity=0.096 Sum_probs=234.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCC-EEEEEECCCcEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVH-LLASASVDGRFFI 284 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~-~LaSgs~DgtV~I 284 (1395)
+.+.+|.++...|+++.=+|-=..+|.|..+|+|.|++++.++ +..|+--.++|++++| ..||+ ++++|+..|.+.+
T Consensus 193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF-rtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF-RTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe-ccCCCeeEEeccCCceEEE
Confidence 6788899999999999999999999999999999999999986 4555533599999999 77776 5677777799999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||++..+. ...+...|.+.+....|.+....++..+.|+.+..| ....+.+.
T Consensus 272 wDLe~kkl-------------~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~-vfD~~dg~-------------- 323 (910)
T KOG1539|consen 272 WDLEKKKL-------------INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW-VFDSGDGV-------------- 323 (910)
T ss_pred EEcCCCee-------------eeeeeccccCCcccceecCCCceEeeccCCCceeEE-EeeCCCCc--------------
Confidence 99998761 223344566777888888877766666666555444 33322221
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--------------------------------------
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD-------------------------------------- 406 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl-------------------------------------- 406 (1395)
...++.-.||..+..|+.|.-..+..+.+++.|++.+.+++
T Consensus 324 -pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa 402 (910)
T KOG1539|consen 324 -PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA 402 (910)
T ss_pred -chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee
Confidence 00134455677777777776333367777777776666654
Q ss_pred ---------------------------CCCce-eEEecCC----CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 407 ---------------------------RKSTP-LAVLRPY----DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 407 ---------------------------~sg~~-l~tl~~h----~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
++... -+++... .+..+++|+.+ +.|++.+.| ...|.|-+|++
T Consensus 403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs----~CGNF~~IG-~S~G~Id~fNm 477 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS----FCGNFVFIG-YSKGTIDRFNM 477 (910)
T ss_pred cccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe----ccCceEEEe-ccCCeEEEEEc
Confidence 22111 1122211 11268889998 889888874 58999999999
Q ss_pred CCCCCCCCCCCcccccEEEEE---eccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeee
Q 039790 455 AEEEGWLLPSDIESWKCTQTL---ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYI 531 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl---~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i 531 (1395)
.+| ....+| ..|...+.. ++...-++.+++++.+|.+++|++.... .+
T Consensus 478 QSG------------i~r~sf~~~~ah~~~V~g---------la~D~~n~~~vsa~~~Gilkfw~f~~k~--------l~ 528 (910)
T KOG1539|consen 478 QSG------------IHRKSFGDSPAHKGEVTG---------LAVDGTNRLLVSAGADGILKFWDFKKKV--------LK 528 (910)
T ss_pred ccC------------eeecccccCccccCceeE---------EEecCCCceEEEccCcceEEEEecCCcc--------ee
Confidence 998 666666 356655543 7777778899999999999999997643 22
Q ss_pred eeeecccc----EEEEecCCCCcCcCCCCeEEEEEcCCCcee---eecccceEEecCCCCC--eecccCCCceEEEeecC
Q 039790 532 AEFTVTMP----ILSLTGTTTDASPDGEHIVQIYCVQTQAIQ---QYALDLSQCLPPPLEN--AELEKTDSNATRAFDVA 602 (1395)
Q Consensus 532 ~~f~~~~~----ils~~~~~~d~~~s~dg~V~lWdv~t~~i~---~~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~ 602 (1395)
........ +..-...- -.++-+|-.|+++|+.|.++. ..|.....-+.|++|+ +.++..| +.+|+||++
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l-~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD-~tIr~wDlp 606 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDL-LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD-STIRTWDLP 606 (910)
T ss_pred eeeccCCCcceeeeeehhhh-hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC-CcEEEEecc
Confidence 22222211 11111110 112357788999999999874 3467777788899987 5555555 778899999
Q ss_pred CCCcceeec
Q 039790 603 NPDGSASLE 611 (1395)
Q Consensus 603 tg~~~~~l~ 611 (1395)
||.++-.+-
T Consensus 607 t~~lID~~~ 615 (910)
T KOG1539|consen 607 TGTLIDGLL 615 (910)
T ss_pred CcceeeeEe
Confidence 999876655
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.8e-20 Score=220.64 Aligned_cols=237 Identities=19% Similarity=0.282 Sum_probs=194.0
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
.+..|...|.|+.+-..++.+++|+.|..+-+|.+..- .+..|.+|...|.+|.| ..+..+|+.|+.||+|++||+..
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f-~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF-DTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec-CcchhhhcccccCCceeeeehhh
Confidence 45568888888888778899999999999999998764 56679999999999999 78888999999999999999998
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
++ .++.+.+|...+.++.|+|.+.++..++.+..+.+||..+.+- .
T Consensus 102 Ak--------------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc--------------------~ 147 (825)
T KOG0267|consen 102 AK--------------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC--------------------S 147 (825)
T ss_pred hh--------------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc--------------------e
Confidence 77 3445667778888999999997664444455666666654432 5
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
+.+.+|...|.++.|+|+| .|+++|+.|.+++|||...|+.+..|.+|.+ .|.++.|. |..-.+.+ |+.|++|
T Consensus 148 ~~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~h----p~e~Lla~-Gs~d~tv 220 (825)
T KOG0267|consen 148 HTYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFH----PLEVLLAP-GSSDRTV 220 (825)
T ss_pred eeecCCcceeEEEeecCCC-ceeeccCCcceeeeecccccccccccccccc-cccccccC----chhhhhcc-CCCCcee
Confidence 7788899999999999999 8999999999999999999999999999998 99999996 66545555 6699999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
++||+++. ..+...+..... +.+..|+++|..+.+|....
T Consensus 221 ~f~dletf------------e~I~s~~~~~~~---------v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 221 RFWDLETF------------EVISSGKPETDG---------VRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeecccee------------EEeeccCCccCC---------ceeeeecCCceeeecCchhh
Confidence 99999876 444444333222 34689999999999887654
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.8e-18 Score=184.34 Aligned_cols=275 Identities=19% Similarity=0.227 Sum_probs=199.7
Q ss_pred CcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--C
Q 039790 150 PSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--N 227 (1395)
Q Consensus 150 ~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--d 227 (1395)
|-+++.+.+..+++++.|++|++||...++|. |.+ -..++.|.+.|..|.|.+ -
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~--------W~~----------------Ts~Wrah~~Si~rV~WAhPEf 72 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT--------WSC----------------TSSWRAHDGSIWRVVWAHPEF 72 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCCCc--------eEE----------------eeeEEecCCcEEEEEecCccc
Confidence 34788889999999999999999996544433 322 235667999999999987 6
Q ss_pred CCEEEEEEcCCeEEEEECCC------C----ceEEeccCCCCeEEEEEee-CCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 228 RNYICYGLKLGNIRILNIIT------A----LRSLLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~------~----~~~~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
|+.+|+++.|++|+||.-.. + .+.++......|++|+|.+ .-|-.|++++.||+||||+.-..-....-
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 89999999999999997622 1 3557778889999999943 24678999999999999998764311110
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCC--CeEEEEEeCC------eEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHK--QEILMLAIGN------RILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~--~~lla~g~~~------~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
.. ...+-..+...+.+.....|+.|++.. ..+|++|.+. .+++|.....++. | ..
T Consensus 153 ~L-q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-------------w---~k 215 (361)
T KOG2445|consen 153 TL-QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-------------W---LK 215 (361)
T ss_pred hh-hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-------------e---ee
Confidence 00 000000011223345556688898642 3577777776 6676655443311 0 11
Q ss_pred eEEEcccCCCeEEEEEecCCC---cEEEEEeCCCcEEEEeCCCC--------------------ceeEEecCCCCCCeeE
Q 039790 369 VQLVGKHDGEITELSMCQWLT---TRLASASLDGTVKIWDDRKS--------------------TPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~---~~LaSgs~Dg~IrIWDl~sg--------------------~~l~tl~~h~~~~V~s 425 (1395)
+..+.+|++.|++|+|.|.-+ .+||+++.|| |+||.++.. +.+..+.+|.+ .|+.
T Consensus 216 va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWr 293 (361)
T KOG2445|consen 216 VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWR 293 (361)
T ss_pred ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEE
Confidence 344568999999999999754 3899999999 999998731 24556789998 9999
Q ss_pred EEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 426 VTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 426 V~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
+.|+ -.|..|.++| .||+||+|...-. ..|+|...++.....
T Consensus 294 v~wN----mtGtiLsStG-dDG~VRLWkany~---------n~~kC~sv~~~e~~~ 335 (361)
T KOG2445|consen 294 VRWN----MTGTILSSTG-DDGCVRLWKANYN---------NLWKCTSVLKAEGSV 335 (361)
T ss_pred EEEe----eeeeEEeecC-CCceeeehhhhhh---------hhheeeeEEeccCCC
Confidence 9999 8899999988 9999999987655 677899888876653
No 122
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=3.5e-18 Score=200.94 Aligned_cols=320 Identities=11% Similarity=0.117 Sum_probs=220.7
Q ss_pred CeEEeecCCCCEEEEeCcCCC--CCee-------eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPK--GRHL-------IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN 229 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~--Gr~L-------~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~ 229 (1395)
..|+++|-|..||+|.+.--+ +... ..+..++-+... . ++....-..+.||.++|+++.|+|.+.
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~----i--~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE----I--QYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee----E--EEEEehhhhhcCcccceEEEEEccchh
Confidence 688999999999999843211 0000 000001000000 0 011111234569999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 230 YICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
.|.+++.|.++.||..... .+..+.|..+.-++.-| +++++.+++-+.-|-.++|......
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw-~~n~~~ii~~g~~Gg~hlWkt~d~~---------- 349 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW-SPNSNVIIAHGRTGGFHLWKTKDKT---------- 349 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE-cCCCCEEEEecccCcEEEEeccCcc----------
Confidence 9999999999999987654 12233455567889999 8999999999999999999933322
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCC-------CCc--------------------------
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNR-------VGK-------------------------- 348 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~-------~~~-------------------------- 348 (1395)
.........+|-..|..+.|+|.|.++++++.|-+..++.... ..+
T Consensus 350 -~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE 428 (764)
T KOG1063|consen 350 -FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE 428 (764)
T ss_pred -ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc
Confidence 1223445677888899999999999988888877665543220 000
Q ss_pred --cccccCCC----------------------------------CC------------cc----------Cc-----cc-
Q 039790 349 --GERFSAEE----------------------------------PL------------KC----------PV-----DE- 364 (1395)
Q Consensus 349 --~~~~s~~~----------------------------------~~------------~~----------~~-----~~- 364 (1395)
.+.|..+. ++ .| .+ ++
T Consensus 429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence 00000000 00 00 00 00
Q ss_pred -----cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 365 -----LINGVQLVGKHDGEITELSMCQWLTTRLASASLDG-----TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 365 -----~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg-----~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
+...++.+.||...|++++.+|++ +++||++... .|++|+..+...++.+.+|+- .|+.++|| |
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL-TVT~l~FS----p 582 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL-TVTRLAFS----P 582 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccce-EEEEEEEC----C
Confidence 000123466899999999999998 8999998754 499999999999999999986 99999999 9
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
||++|++++ .|+++.+|....+.. +. ......+.|...+ ..+.|+|++.++++++.|.+|++
T Consensus 583 dg~~LLsvs-RDRt~sl~~~~~~~~-----~e---~~fa~~k~HtRII---------WdcsW~pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 583 DGRYLLSVS-RDRTVSLYEVQEDIK-----DE---FRFACLKAHTRII---------WDCSWSPDEKYFATASRDKKVKV 644 (764)
T ss_pred CCcEEEEee-cCceEEeeeeecccc-----hh---hhhccccccceEE---------EEcccCcccceeEEecCCceEEE
Confidence 999999988 999999999855410 00 1122245555443 35899999999999999999999
Q ss_pred EEcCCC
Q 039790 515 IHMDYG 520 (1395)
Q Consensus 515 Wdl~~g 520 (1395)
|....+
T Consensus 645 W~~~~~ 650 (764)
T KOG1063|consen 645 WEEPDL 650 (764)
T ss_pred EeccCc
Confidence 998875
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.1e-18 Score=183.54 Aligned_cols=264 Identities=16% Similarity=0.171 Sum_probs=192.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+....|+.+++||.+|++++..- .....| .|...+++++|.. ...+
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~----------------------------~l~~~~-~~~~plL~c~F~d-~~~~ 68 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPAN----------------------------SLKLKF-KHGAPLLDCAFAD-ESTI 68 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccch----------------------------hhhhhe-ecCCceeeeeccC-CceE
Confidence 334444577888889999999993310 111122 3778999999987 4568
Q ss_pred EEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 232 CYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
++|+-||.|+++|+.++....+..|...|.||.+ ......+++||+|++|++||.+.......+
T Consensus 69 ~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~-~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~--------------- 132 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEY-SYEVGCVISGSWDKTIKFWDPRNKVVVGTF--------------- 132 (323)
T ss_pred EEeccCceEEEEEecCCcceeeccCCCceEEEEe-eccCCeEEEcccCccEEEEecccccccccc---------------
Confidence 9999999999999999998899999999999999 677788999999999999999963311111
Q ss_pred CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 312 DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 312 ~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.....|+ +.+-.+..|++++.+..+.+||.+...... ...-..-...+.||++-|.+ .=
T Consensus 133 d~~kkVy--~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~------------------q~reS~lkyqtR~v~~~pn~-eG 191 (323)
T KOG1036|consen 133 DQGKKVY--CMDVSGNRLVVGTSDRKVLIYDLRNLDEPF------------------QRRESSLKYQTRCVALVPNG-EG 191 (323)
T ss_pred ccCceEE--EEeccCCEEEEeecCceEEEEEcccccchh------------------hhccccceeEEEEEEEecCC-Cc
Confidence 1112333 334456678888888889988887654320 11112344578999999976 56
Q ss_pred EEEEeCCCcEEEEeCCCC----ceeEEecCCCC--------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCC
Q 039790 392 LASASLDGTVKIWDDRKS----TPLAVLRPYDG--------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEG 459 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg----~~l~tl~~h~~--------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~ 459 (1395)
++.+|-||+|.+=.+... +....|+.|.. .+|++++|+ |-...|+|+| .||.|.+||+.+.
T Consensus 192 y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh----p~~~tfaTgG-sDG~V~~Wd~~~r-- 264 (323)
T KOG1036|consen 192 YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH----PIHGTFATGG-SDGIVNIWDLFNR-- 264 (323)
T ss_pred eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec----cccceEEecC-CCceEEEccCcch--
Confidence 788899999887666554 44456666642 289999998 8888999988 8999999999877
Q ss_pred CCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 460 WLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 460 ~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
+.+..|..-...+ ..++|+.||..||.++.
T Consensus 265 ----------Krl~q~~~~~~SI---------~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 265 ----------KRLKQLAKYETSI---------SSLSFSMDGSLLAIASS 294 (323)
T ss_pred ----------hhhhhccCCCCce---------EEEEeccCCCeEEEEec
Confidence 5555554333222 25999999999998874
No 124
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=2.3e-18 Score=194.59 Aligned_cols=264 Identities=19% Similarity=0.173 Sum_probs=194.3
Q ss_pred ceeeeeCCCCCEEEEEEecCC--CEEEEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 208 PITKYISDPGLVLGRQIAVNR--NYICYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg--~~LasGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
....++-+.+.|++++|+|.. +++|+|.+-|.|-+||+.+. .+..+..|.++|.+|.|++.+...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 334566788999999999954 68999999999999999642 46788999999999999878888999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|++-|++.+..+..+. ..........+.|+.....++++..-|.+..||.+..+..
T Consensus 258 tiR~~D~~~~i~e~v~s------------~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----------- 314 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLS------------LDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----------- 314 (498)
T ss_pred eeeeeeecchhhHHHhh------------cCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc-----------
Confidence 99999999875322111 1122333456677788888888888887777877655442
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCCeeEEEEeecCCCCC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST----PLAVLRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~----~l~tl~~h~~~~V~sV~fs~~~~pdg 436 (1395)
+..+.-|...|++|+++|..+.+|+|||.|++++|||+|.-. ++-....|.. .|.++.|| |.+
T Consensus 315 --------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr-sV~sAyFS----Ps~ 381 (498)
T KOG4328|consen 315 --------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR-SVNSAYFS----PSG 381 (498)
T ss_pred --------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccc-eeeeeEEc----CCC
Confidence 233445888999999999998999999999999999998632 2233335776 99999999 888
Q ss_pred cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
..|++.| .|..|+|||..-...+. ..+.++. |...... ....| ...|.|+-.+|+.|-.-..|-|+|
T Consensus 382 gtl~TT~-~D~~IRv~dss~~sa~~--------~p~~~I~-Hn~~t~R-wlT~f--KA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 382 GTLLTTC-QDNEIRVFDSSCISAKD--------EPLGTIP-HNNRTGR-WLTPF--KAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CceEeec-cCCceEEeecccccccC--------Cccceee-ccCcccc-cccch--hheeCCCccEEEEeccCcceeEEc
Confidence 8899988 99999999984110000 1222222 2211101 01111 378889999999999988999998
Q ss_pred cCCC
Q 039790 517 MDYG 520 (1395)
Q Consensus 517 l~~g 520 (1395)
-..+
T Consensus 449 ~~~~ 452 (498)
T KOG4328|consen 449 GNGG 452 (498)
T ss_pred CCCC
Confidence 6654
No 125
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.2e-18 Score=182.87 Aligned_cols=306 Identities=17% Similarity=0.207 Sum_probs=201.8
Q ss_pred eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeE
Q 039790 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEI 329 (1395)
Q Consensus 250 ~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~l 329 (1395)
...|++|.+.|++|+| +.||++|+|++.|++|+||+++.-... .-.+++..-..+ ..+.+.|.|+...+
T Consensus 79 ~~~LKgH~~~vt~~~F-sSdGK~lat~~~Dr~Ir~w~~~DF~~~---------eHr~~R~nve~d-hpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAF-SSDGKKLATISGDRSIRLWDVRDFENK---------EHRCIRQNVEYD-HPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhhccCCceeeeEE-cCCCceeEEEeCCceEEEEecchhhhh---------hhhHhhccccCC-CceEEEECCCcceE
Confidence 3478999999999999 999999999999999999999874310 011222221112 45689999998866
Q ss_pred EEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 330 LMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 330 la~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
++.. .++.++++-..+...+. .++....| +....-..|.-.|..+-....+ .+|++++.|..|.|||++
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~-----~~~~~v~~---D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk- 217 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGS-----GSHHFVHI---DNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK- 217 (420)
T ss_pred EEEEccCCEEEEEEeeecccCC-----CCcccccc---cccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-
Confidence 5554 45666666543322210 01101011 1122334566677777776555 899999999999999998
Q ss_pred CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccccc
Q 039790 409 STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDA 488 (1395)
Q Consensus 409 g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~ 488 (1395)
|+.+.++..... .-+..+.| |+|++|+++| ..-.|++|.+--+.. .....-..+..|++|...+..
T Consensus 218 Gq~L~~idtnq~-~n~~aavS----P~GRFia~~g-FTpDVkVwE~~f~kd----G~fqev~rvf~LkGH~saV~~---- 283 (420)
T KOG2096|consen 218 GQLLQSIDTNQS-SNYDAAVS----PDGRFIAVSG-FTPDVKVWEPIFTKD----GTFQEVKRVFSLKGHQSAVLA---- 283 (420)
T ss_pred Cceeeeeccccc-cccceeeC----CCCcEEEEec-CCCCceEEEEEeccC----cchhhhhhhheeccchhheee----
Confidence 999999987665 67888899 9999999998 888999998743310 001122345678888877654
Q ss_pred ccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC-CCcceeeeeee-------eccccEEEEecCCCCcC-cCCCCeEE
Q 039790 489 FFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP-ASTRMDYIAEF-------TVTMPILSLTGTTTDAS-PDGEHIVQ 559 (1395)
Q Consensus 489 ~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~-~~~~~~~i~~f-------~~~~~ils~~~~~~d~~-~s~dg~V~ 559 (1395)
++|+++...+++.+.||+++|||.+-.-.. ..++ .+.++ ....-.+.+.... +.+ .+....++
T Consensus 284 -----~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk--~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~gs~l~ 355 (420)
T KOG2096|consen 284 -----AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK--ILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSFGSDLK 355 (420)
T ss_pred -----eeeCCCcceeEEEecCCcEEEeeccceEecCCCch--HhhcCCcchhhcCCCceEEEeCCCC-cEEEeecCCceE
Confidence 999999999999999999999997631110 0111 12222 1112234555444 333 34556799
Q ss_pred EEEcCCCcee----eecccceEEecCCCCC-eecccCCCceEEEe
Q 039790 560 IYCVQTQAIQ----QYALDLSQCLPPPLEN-AELEKTDSNATRAF 599 (1395)
Q Consensus 560 lWdv~t~~i~----~~~~~~~~cl~~s~d~-l~~~~sd~~v~~iW 599 (1395)
+|+..+++.. ..|.....|+.++.++ +..+-.| ..+|++
T Consensus 356 ~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~ 399 (420)
T KOG2096|consen 356 VFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVI 399 (420)
T ss_pred EEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeee
Confidence 9999998754 4466777899999987 3333334 333343
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=197.08 Aligned_cols=225 Identities=17% Similarity=0.162 Sum_probs=173.9
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYG 234 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasG 234 (1395)
.+.+..|+.|...|.+.+|.+. .+..+..+..|...|+|+.|+-||.+|++|
T Consensus 90 ~n~G~~l~ag~i~g~lYlWels----------------------------sG~LL~v~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELS----------------------------SGILLNVLSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred CCCceEEEeecccCcEEEEEec----------------------------cccHHHHHHhhccceeEEEEeCCCcEEEec
Confidence 4444566666677777777743 124455667899999999999999999999
Q ss_pred EcCCeEEEEECCC----------CceEEeccCCCCeEEEEEeeC--CCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 235 LKLGNIRILNIIT----------ALRSLLRGHTQRVTDMAFFAE--DVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 235 s~DG~IrIWd~~~----------~~~~~l~~H~~~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
++||.|++|.+-+ ..++.|.+|+-.|+++.. .. ...+|+|+|.|.++++||+..|.
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~i-g~Gg~~~rl~TaS~D~t~k~wdlS~g~----------- 209 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQI-GSGGTNARLYTASEDRTIKLWDLSLGV----------- 209 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEe-cCCCccceEEEecCCceEEEEEeccce-----------
Confidence 9999999998643 257899999999999998 43 34689999999999999999886
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC--CeE
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG--EIT 380 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~--~V~ 380 (1395)
.+..+ .....+.+++.+|.+..+++++.++.|........... +.+-. .-........+..+.||.+ .|+
T Consensus 210 LLlti----~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~---~~~v~-~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 210 LLLTI----TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ---SAGVN-QKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred eeEEE----ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcc---ccccc-ccccccccceeeeeccccCCccee
Confidence 22222 23456789999999999999999999998877554310 00000 0000111223677889998 999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
|++++-|| ++|++|+.||.|+|||+.+.+|++++....+ +|+.+.+.
T Consensus 282 cLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg-pVtnL~i~ 328 (476)
T KOG0646|consen 282 CLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG-PVTNLQIN 328 (476)
T ss_pred EEEEecCc-cEEEeeCCCCCEEEEecchHHHHHHHhhhcc-ccceeEee
Confidence 99999999 8999999999999999999999999986666 99999996
No 127
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=2.9e-17 Score=193.37 Aligned_cols=305 Identities=16% Similarity=0.193 Sum_probs=211.6
Q ss_pred cccceeeeeCCCCCEEEEEEecCCC---EEEEEEcCCeEEEEECCCCc----------------------e---------
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRN---YICYGLKLGNIRILNIITAL----------------------R--------- 250 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~---~LasGs~DG~IrIWd~~~~~----------------------~--------- 250 (1395)
....+..+.||.++|.+++|+.-+. +||+|+.|..||||.+.-+- .
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 4467788999999999999988554 89999999999999864210 0
Q ss_pred -EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC--CCCccEEEEeCCCC
Q 039790 251 -SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG--DSVHPRVCWHPHKQ 327 (1395)
Q Consensus 251 -~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~--~~~v~~v~~sp~~~ 327 (1395)
..+.||.++|+++.| .+.+..|++++.|.++.||...+. +|-++..+++-.-. ....+.+.|++++.
T Consensus 260 eall~GHeDWV~sv~W-~p~~~~LLSASaDksmiiW~pd~~---------tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWW-HPEGLDLLSASADKSMIIWKPDEN---------TGIWVDVVRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred hhhhcCcccceEEEEE-ccchhhheecccCcceEEEecCCc---------cceEEEEEEeecccccccceeeEEEcCCCC
Confidence 123599999999999 888889999999999999998764 34566555554333 44577899999999
Q ss_pred eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEE----
Q 039790 328 EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI---- 403 (1395)
Q Consensus 328 ~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrI---- 403 (1395)
.+++-|..|....|-...... | .....+.||.+.|++++|+|.| .+|++.|.|-+-|+
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~---w--------------~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTF---W--------------TQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARW 391 (764)
T ss_pred EEEEecccCcEEEEeccCccc---e--------------eeccccccccccceeeeecCCC-CEEEEeccccceeeeccc
Confidence 999999999999997322111 0 0022344566666666666655 45555555555554
Q ss_pred ------------------------------------------EeCC----------------------------------
Q 039790 404 ------------------------------------------WDDR---------------------------------- 407 (1395)
Q Consensus 404 ------------------------------------------WDl~---------------------------------- 407 (1395)
|+..
T Consensus 392 g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn 471 (764)
T KOG1063|consen 392 GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN 471 (764)
T ss_pred ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence 3321
Q ss_pred ---------CCc---------------------------------eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 408 ---------KST---------------------------------PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 408 ---------sg~---------------------------------~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
+|. .++.+.||.- .|++|+.+ |+|+++++++..
T Consensus 472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy-Ev~~l~~s----~~gnliASaCKS 546 (764)
T KOG1063|consen 472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY-EVYALAIS----PTGNLIASACKS 546 (764)
T ss_pred CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCce-eEEEEEec----CCCCEEeehhhh
Confidence 000 1122346754 89999999 999999998732
Q ss_pred ----CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 446 ----NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 446 ----Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
...|+||+..+ |..++.+.+|.-.++. +.||+||++|++.+.|+++.+|....+.
T Consensus 547 ~~~ehAvI~lw~t~~------------W~~~~~L~~HsLTVT~---------l~FSpdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 547 SLKEHAVIRLWNTAN------------WLQVQELEGHSLTVTR---------LAFSPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred CCccceEEEEEeccc------------hhhhheecccceEEEE---------EEECCCCcEEEEeecCceEEeeeeeccc
Confidence 24699999855 4888889999876654 9999999999999999999999986543
Q ss_pred CCCCcceeeeeeeeccccEEEEecCCCCc-C--cCCCCeEEEEEcCCC
Q 039790 522 NPASTRMDYIAEFTVTMPILSLTGTTTDA-S--PDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 522 ~~~~~~~~~i~~f~~~~~ils~~~~~~d~-~--~s~dg~V~lWdv~t~ 566 (1395)
... .++..+..++ ..++..+..+... + ++-|.+|+||.....
T Consensus 606 ~~e-~~fa~~k~Ht--RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 606 KDE-FRFACLKAHT--RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred chh-hhhccccccc--eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 222 1222222221 2334444333111 1 477999999998876
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.79 E-value=1.4e-16 Score=184.65 Aligned_cols=234 Identities=13% Similarity=0.096 Sum_probs=163.6
Q ss_pred CCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 228 RNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
++.+++++.||.|++||..++. +..+..|. .+.+++| ++++..+ ++++.|+.|++||+.+++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~-~~dg~~l~~~~~~~~~v~~~d~~~~~~------------- 65 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITL-SKDGKLLYVCASDSDTIQVIDLATGEV------------- 65 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEE-CCCCCEEEEEECCCCeEEEEECCCCcE-------------
Confidence 3578899999999999998874 55565554 4778999 8888876 6777899999999998761
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
+..+..+ .....++|+++++.+++++. ++.+.+|+... ... +..+. +...+.+++|
T Consensus 66 -~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~-------------------~~~~~-~~~~~~~~~~ 122 (300)
T TIGR03866 66 -IGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIET-RKV-------------------LAEIP-VGVEPEGMAV 122 (300)
T ss_pred -EEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeE-------------------EeEee-CCCCcceEEE
Confidence 1212222 22457899999988877765 45566665532 110 22222 2345688999
Q ss_pred ecCCCcEEEEEeCCC-cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 385 CQWLTTRLASASLDG-TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg-~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
+|+| .++++++.++ .+.+||..++..+..+.... .+.+++|+ ++|++|++++..++.|++||+.++
T Consensus 123 ~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~s----~dg~~l~~~~~~~~~v~i~d~~~~------ 189 (300)
T TIGR03866 123 SPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ--RPRFAEFT----ADGKELWVSSEIGGTVSVIDVATR------ 189 (300)
T ss_pred CCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEEcCC--CccEEEEC----CCCCEEEEEcCCCCEEEEEEcCcc------
Confidence 9998 7888887765 57788999888776654332 56889999 999988776657999999999987
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE-EeCCCeEEEEEcCCC
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA-NAKKNAIYAIHMDYG 520 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS-gs~Dg~I~iWdl~~g 520 (1395)
+++..+..+..... ...+....+.|+++|.+++. .+.++.|++||+.++
T Consensus 190 ------~~~~~~~~~~~~~~--~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 190 ------KVIKKITFEIPGVH--PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred ------eeeeeeeecccccc--cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 77776654422110 01122235789999997544 456778999998764
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.79 E-value=3e-17 Score=185.94 Aligned_cols=236 Identities=11% Similarity=0.142 Sum_probs=191.8
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
..++|..+.+.+||+.|++|+.-.++.|||+.... ...+....-..+.++. ++|.++.++|+.||.|.|||+.+..
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~-spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI-SPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc-CCccceeeeeccCCcEEEEEcccce
Confidence 35789999999999999999999999999998752 3345555556888999 9999999999999999999999865
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.++.+.+|.+.+.||.++.+|..|..+|-++++..||.+...+
T Consensus 543 --------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq----------------------- 585 (705)
T KOG0639|consen 543 --------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ----------------------- 585 (705)
T ss_pred --------------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-----------------------
Confidence 4566778888899999999999999999999999998865332
Q ss_pred Eccc--CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 372 VGKH--DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 372 l~~h--~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
+..| ...|.++.++|.+ .+|+.|-.++.|.|.... +...+.+.-|.. .|.+|.|. +.|+|++++| .|+.+
T Consensus 586 lqqhdF~SQIfSLg~cP~~-dWlavGMens~vevlh~s-kp~kyqlhlheS-cVLSlKFa----~cGkwfvStG-kDnlL 657 (705)
T KOG0639|consen 586 LQQHDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTS-KPEKYQLHLHES-CVLSLKFA----YCGKWFVSTG-KDNLL 657 (705)
T ss_pred hhhhhhhhhheecccCCCc-cceeeecccCcEEEEecC-Cccceeeccccc-EEEEEEec----ccCceeeecC-chhhh
Confidence 1123 4579999999998 899999999998887754 444566777887 99999999 9999999999 99999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
..|.+.-| ..+...+..+. + .++.+|.|.++|++|+.|....+|.+.
T Consensus 658 nawrtPyG------------asiFqskE~Ss-V---------lsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 658 NAWRTPYG------------ASIFQSKESSS-V---------LSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred hhccCccc------------cceeeccccCc-c---------eeeeeccCceEEEecCCCcceEEEEEe
Confidence 99998776 44443332221 1 257889999999999999888777753
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.5e-17 Score=180.56 Aligned_cols=270 Identities=13% Similarity=0.133 Sum_probs=206.1
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
.+.|..+.|++.+..|+++++||.+++||+....+.....|..++.+++| . +...+++|+.||.|+.+|+.++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F-~-d~~~~~~G~~dg~vr~~Dln~~~---- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAF-A-DESTIVTGGLDGQVRRYDLNTGN---- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeec-c-CCceEEEeccCceEEEEEecCCc----
Confidence 47899999999999999999999999999998876666679999999999 3 46789999999999999999987
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
...++.|...+.++++++..+.+++++.++.|..||.+.... ...+ ..
T Consensus 87 -----------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~--------------------~~~~-d~ 134 (323)
T KOG1036|consen 87 -----------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV--------------------VGTF-DQ 134 (323)
T ss_pred -----------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc--------------------cccc-cc
Confidence 245678899999999999888999999999999998864111 1111 13
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
.+.|.|+..+ | +.|+.|+.|..|.+||+|+.......+ ..-...+.||++. |++.-.+++ |-||.|.+=.+
T Consensus 135 ~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~----pn~eGy~~s-SieGRVavE~~ 206 (323)
T KOG1036|consen 135 GKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALV----PNGEGYVVS-SIEGRVAVEYF 206 (323)
T ss_pred CceEEEEecc--C-CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEe----cCCCceEEE-eecceEEEEcc
Confidence 3478888875 3 789999999999999999865433222 1112378999998 877777764 49999988666
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeee
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEF 534 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f 534 (1395)
+..+ +.-.....|+.|.......+..+.+..++|+|--..|++|+.||.|.+||+.. ..++..+++|
T Consensus 207 d~s~--------~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~-----rKrl~q~~~~ 273 (323)
T KOG1036|consen 207 DDSE--------EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN-----RKRLKQLAKY 273 (323)
T ss_pred CCch--------HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc-----hhhhhhccCC
Confidence 5431 11123345666765554555666677899999999999999999999999876 3467778888
Q ss_pred eccccEEEEe
Q 039790 535 TVTMPILSLT 544 (1395)
Q Consensus 535 ~~~~~ils~~ 544 (1395)
......++|.
T Consensus 274 ~~SI~slsfs 283 (323)
T KOG1036|consen 274 ETSISSLSFS 283 (323)
T ss_pred CCceEEEEec
Confidence 5544444444
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=180.85 Aligned_cols=255 Identities=15% Similarity=0.212 Sum_probs=178.8
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
..|+.|++.|.+||+|+.||.|.|||+.+. .-..+.+|..+|++++| +++|+.|+|++.|..|.+||+..|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~W-S~dgr~LltsS~D~si~lwDl~~gs~----- 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCW-SRDGRKLLTSSRDWSIKLWDLLKGSP----- 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEe-cCCCCEeeeecCCceeEEEeccCCCc-----
Confidence 789999999999999999999999999986 46678899999999999 99999999999999999999999872
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
+..++ ....|..+.|||.+...++++- ...-++++... .....+..+.+. .-.
T Consensus 100 ------l~rir----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~-~~h~~Lp~d~d~---------------dln 153 (405)
T KOG1273|consen 100 ------LKRIR----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD-PKHSVLPKDDDG---------------DLN 153 (405)
T ss_pred ------eeEEE----ccCccceeeeccccCCeEEEEEecCCcEEEEecC-CceeeccCCCcc---------------ccc
Confidence 22222 3567888999998776555543 33333333322 111111100000 001
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
....+..|.+.| +++++|...|.+.|||..+-+|+..++--....|..+.|+ -.|++|++-+ .|+.||.|++..
T Consensus 154 ~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s----~~g~~liiNt-sDRvIR~ye~~d 227 (405)
T KOG1273|consen 154 SSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS----RKGRFLIINT-SDRVIRTYEISD 227 (405)
T ss_pred cccccccccCCC-CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe----ccCcEEEEec-CCceEEEEehhh
Confidence 112233678877 8999999999999999999999999886653389999998 8899999866 999999999873
Q ss_pred CCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCCCC
Q 039790 457 EEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDYGP 521 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~g~ 521 (1395)
-.... ........+.+.. .+.. ..| ..++|+.+|.|+++++ .-..+|||.-..|.
T Consensus 228 i~~~~---r~~e~e~~~K~qD---vVNk---~~W-k~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 228 IDDEG---RDGEVEPEHKLQD---VVNK---LQW-KKCCFSGDGEYVCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred hcccC---ccCCcChhHHHHH---HHhh---hhh-hheeecCCccEEEeccccceeEEEEecCCcc
Confidence 20000 0000011111110 0000 011 2589999999998887 45679999988775
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=6.5e-18 Score=197.11 Aligned_cols=319 Identities=17% Similarity=0.170 Sum_probs=204.7
Q ss_pred eeeeCCCCCEEE--EEEec---CCCEEEEEEcCCeEEEEECCCC-------ceEEeccCCCCeEEEEEeeCCCCEEEEEE
Q 039790 210 TKYISDPGLVLG--RQIAV---NRNYICYGLKLGNIRILNIITA-------LRSLLRGHTQRVTDMAFFAEDVHLLASAS 277 (1395)
Q Consensus 210 ~~l~~h~~~V~~--va~Sp---dg~~LasGs~DG~IrIWd~~~~-------~~~~l~~H~~~V~slaf~s~dg~~LaSgs 277 (1395)
..+..|.-++.- +.|++ ..+.|+.+..||.|.++|.... .+..+..|.+.|.++.| .+...+|++++
T Consensus 41 ~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~w-apge~~lVsas 119 (720)
T KOG0321|consen 41 TSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKW-APGESLLVSAS 119 (720)
T ss_pred cccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeecc-CCCceeEEEcc
Confidence 344444444433 55665 4578999999999999998764 24566789999999999 77778999999
Q ss_pred CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCcc--ccc--
Q 039790 278 VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKG--ERF-- 352 (1395)
Q Consensus 278 ~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~--~~~-- 352 (1395)
.|.++++||+.++.+ ....++.+|...+.++||++.+..+|++|. ++.+.+||.+..+.. ..|
T Consensus 120 GDsT~r~Wdvk~s~l------------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~ 187 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRL------------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDN 187 (720)
T ss_pred CCceeeeeeecccee------------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhh
Confidence 999999999998872 223456788999999999999998777765 666777776554311 000
Q ss_pred ---cCCCCCccCccccccceEEEcccCCCeEE---EEEecCCCcEEEEEeC-CCcEEEEeCCCCceeEE--------ecC
Q 039790 353 ---SAEEPLKCPVDELINGVQLVGKHDGEITE---LSMCQWLTTRLASASL-DGTVKIWDDRKSTPLAV--------LRP 417 (1395)
Q Consensus 353 ---s~~~~~~~~~~~~~~~~~~l~~h~~~V~s---lafspdg~~~LaSgs~-Dg~IrIWDl~sg~~l~t--------l~~ 417 (1395)
..-..-........++...-..|...|.+ +.+..|. ..||+++. |+.|||||+++..+... +..
T Consensus 188 ~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t 266 (720)
T KOG0321|consen 188 RIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT 266 (720)
T ss_pred hhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccC
Confidence 00000000111111223333445555555 5566666 78999888 99999999997543322 222
Q ss_pred CC--CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 418 YD--GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 418 h~--~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
|. ...+.++... ..|.+|++.| .|+.|++|++.+. .-..+..|.++.. ..|++ .-.
T Consensus 267 ~skrs~G~~nL~lD----ssGt~L~AsC-tD~sIy~ynm~s~----------s~sP~~~~sg~~~------~sf~v-ks~ 324 (720)
T KOG0321|consen 267 HSKRSVGQVNLILD----SSGTYLFASC-TDNSIYFYNMRSL----------SISPVAEFSGKLN------SSFYV-KSE 324 (720)
T ss_pred cccceeeeEEEEec----CCCCeEEEEe-cCCcEEEEecccc----------CcCchhhccCccc------ceeee-eee
Confidence 31 1256777776 7789999888 7999999999874 1134444444432 12332 356
Q ss_pred EeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCC
Q 039790 496 LNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 496 ~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~ 566 (1395)
.++|+.+|++|+.|...|+|.+..-..+.. +..-+.+.++.-.+...........++|..++||++..+
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~--~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWVVSSPEAPPA--LLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCCCCceEeccCCCcceeeeeecCccCChh--hhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 789999999999999999999987543211 111111222222222221110111378899999999665
No 133
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=3.2e-17 Score=176.97 Aligned_cols=251 Identities=14% Similarity=0.183 Sum_probs=184.4
Q ss_pred CCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCC-Cc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 215 DPGLVLGRQIAV-NRNYICYGLKLGNIRILNIIT-AL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 215 h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~-~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
-.+.|.+++||| ...+|+.|+.||+||+|++.. |. -.....|.++|.+++| +.||..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~W-sddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCW-SDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEE-ccCCceEEeeccCCceEEEEccCC
Confidence 347899999999 566777999999999999987 32 2455679999999999 999999999999999999999998
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
. ...+..|+..|..+.|-+... .++++|+-++.+++|+.+.... +
T Consensus 105 Q---------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-------------------v 150 (347)
T KOG0647|consen 105 Q---------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-------------------V 150 (347)
T ss_pred C---------------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-------------------e
Confidence 7 456778899999999987665 4667777666666666543221 2
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP-LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~-l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
..+. -.+.|+++..-. .+++.+..++.|.+|+++.+.. .+.+...-..-++||+.. .|+...+.+ +-+|.
T Consensus 151 ~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f----~d~~~~alG-siEGr 221 (347)
T KOG0647|consen 151 ATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACF----QDKDGFALG-SIEGR 221 (347)
T ss_pred eeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEE----ecCCceEee-eecce
Confidence 2232 445677776543 4788888999999999987632 222222222368899887 777777774 49999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.|..+..+ .. +.-.+|+.|.........-|-+..++|.|.-..|++.+.||++.+||-+.
T Consensus 222 v~iq~id~~---------~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 222 VAIQYIDDP---------NP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred EEEEecCCC---------Cc-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 999998875 11 33345666654322112234455799999989999999999999999654
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=188.86 Aligned_cols=250 Identities=16% Similarity=0.184 Sum_probs=195.6
Q ss_pred CCEEEEEE-cCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 228 RNYICYGL-KLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 228 g~~LasGs-~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
+.|++++. .-..|.+|.+.... .....--.+.|.+++- +++|.+|+.|+..|.|++|.+.+|.
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s-~n~G~~l~ag~i~g~lYlWelssG~-------------- 114 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS-SNLGYFLLAGTISGNLYLWELSSGI-------------- 114 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeec-CCCceEEEeecccCcEEEEEecccc--------------
Confidence 46777764 44689999998763 2222234568999998 8999999999999999999999998
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
.+.++..|-..++++.|+-++..|+.++.|+.++.|........ +. +....+++.+..|.-.|+++...
T Consensus 115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a-----~~------~~~~~p~~~f~~HtlsITDl~ig 183 (476)
T KOG0646|consen 115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA-----DN------DHSVKPLHIFSDHTLSITDLQIG 183 (476)
T ss_pred HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc-----cc------CCCccceeeeccCcceeEEEEec
Confidence 34556778888999999999999999999999999987654321 11 11345588899999999999987
Q ss_pred cCCC-cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC--
Q 039790 386 QWLT-TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL-- 462 (1395)
Q Consensus 386 pdg~-~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~-- 462 (1395)
+-|. .+|+|+|.|.++|+||+..|..+.++.... .+.+|+.+ |-++.+.+|+ .+|.|.+.++....+...
T Consensus 184 ~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~--si~av~lD----pae~~~yiGt-~~G~I~~~~~~~~~~~~~~v 256 (476)
T KOG0646|consen 184 SGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS--SIKAVALD----PAERVVYIGT-EEGKIFQNLLFKLSGQSAGV 256 (476)
T ss_pred CCCccceEEEecCCceEEEEEeccceeeEEEecCC--cceeEEEc----ccccEEEecC-CcceEEeeehhcCCcccccc
Confidence 7532 499999999999999999999999887654 79999999 8888888865 999999998866522111
Q ss_pred --CCCcccccEEEEEeccCc--ccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 463 --PSDIESWKCTQTLELKSS--AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 463 --~~~~~~~~~l~tl~~h~~--~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.........+..+.+|.+ .+ .+++++-||.+|++|+.||.|+|||+..
T Consensus 257 ~~k~~~~~~t~~~~~~Gh~~~~~I---------TcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 257 NQKGRHEENTQINVLVGHENESAI---------TCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cccccccccceeeeeccccCCcce---------eEEEEecCccEEEeeCCCCCEEEEecch
Confidence 111233455667777776 33 3599999999999999999999999866
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3e-17 Score=185.61 Aligned_cols=250 Identities=13% Similarity=0.119 Sum_probs=191.4
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCC-EEEEEECCCcEEEEECCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVH-LLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~-~LaSgs~DgtV~IWdl~tg~ 291 (1395)
.+.|++|.|+|....|.+|+.||+++||.++.. .++.+.-..-+|.+.+| .++|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f-~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEF-APNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeee-cCCCceEEEecccceEEEEeeccccc
Confidence 478999999999999999999999999999875 35555556779999999 78888 89999999999999999887
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..... ...+.....+..+..++++++|+..|..+.|.++-.....- +..
T Consensus 292 ~~k~~-----------~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--------------------i~s 340 (514)
T KOG2055|consen 292 VTKLK-----------PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--------------------ITS 340 (514)
T ss_pred ccccc-----------CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--------------------hhe
Confidence 33222 11222344566788899999999999999999886533211 122
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
++ -.+.|.+++|+.|+ +.|+.++.+|.|.+||++...|++.|....+-.-+++|.+ ++|.||++ ||..|.|.|
T Consensus 341 ~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S----~ng~ylA~-GS~~GiVNI 413 (514)
T KOG2055|consen 341 FK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCIS----LNGSYLAT-GSDSGIVNI 413 (514)
T ss_pred ee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeec----CCCceEEe-ccCcceEEE
Confidence 22 45789999999998 7888888899999999999999999986554344667777 88999988 559999999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcCC
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMDY 519 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~~ 519 (1395)
||..+.. .....+.+.++..-...+ ..+.|++|+.+|+-++ .++.+++.|+..
T Consensus 414 Yd~~s~~------~s~~PkPik~~dNLtt~I---------tsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 414 YDGNSCF------ASTNPKPIKTVDNLTTAI---------TSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eccchhh------ccCCCCchhhhhhhheee---------eeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 9976541 112335555555444333 3599999999987766 678899999865
No 136
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.77 E-value=1.4e-16 Score=191.08 Aligned_cols=345 Identities=15% Similarity=0.147 Sum_probs=245.1
Q ss_pred cceeeeeCCCCCEEEEEEecCCCE-EEEEEcCCeEEEEECCCCceE--EeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNY-ICYGLKLGNIRILNIITALRS--LLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~-LasGs~DG~IrIWd~~~~~~~--~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
+.+..|+...+.|+.++|.-||+. +|+|+..|.+.+||++...+. ....|.+.|....| -+....+++++.|..++
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f-l~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF-LPGEPVLVTAGADNSLK 313 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee-cCCCceEeeccCCCcee
Confidence 456677755699999999999975 567777899999999987533 44479999999999 77888999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC-CCeEEEEEeCCeEEEEEcCCC------C---------
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH-KQEILMLAIGNRILKIDSNRV------G--------- 347 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~-~~~lla~g~~~~ii~~d~~~~------~--------- 347 (1395)
+|=.+++... ...++...+|..+..++.|.-. +..++..+.+.....+..... +
T Consensus 314 ~~vfD~~dg~----------pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 314 VWVFDSGDGV----------PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred EEEeeCCCCc----------chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 9988866511 2346777888888899999854 444555555554443322110 0
Q ss_pred cc-------------ccccCC---------------CCCccCccccccc---eEEEc-----ccCCCeEEEEEecCCCcE
Q 039790 348 KG-------------ERFSAE---------------EPLKCPVDELING---VQLVG-----KHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 348 ~~-------------~~~s~~---------------~~~~~~~~~~~~~---~~~l~-----~h~~~V~slafspdg~~~ 391 (1395)
+. ..|..+ +...+..|...+. ..++. .-...+++++.++.| ++
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF 462 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NF 462 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ce
Confidence 00 011111 1112333433222 22332 123679999999998 89
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEe---cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVL---RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl---~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
.+.|+..|+|-+|++.+|-...+| ..|++ +|+.|+.. .-++.++++| .+|-+++||....
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~-~V~gla~D----~~n~~~vsa~-~~Gilkfw~f~~k----------- 525 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG-EVTGLAVD----GTNRLLVSAG-ADGILKFWDFKKK----------- 525 (910)
T ss_pred EEEeccCCeEEEEEcccCeeecccccCccccC-ceeEEEec----CCCceEEEcc-CcceEEEEecCCc-----------
Confidence 999999999999999999888888 48987 99999997 6778899988 9999999999887
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccc-cEEEEecCC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTM-PILSLTGTT 547 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~-~ils~~~~~ 547 (1395)
..+..++...... .+.++....+++.+..|-.|+++|..+. +.+++|.++. .+-.+++++
T Consensus 526 -~l~~~l~l~~~~~----------~iv~hr~s~l~a~~~ddf~I~vvD~~t~--------kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 526 -VLKKSLRLGSSIT----------GIVYHRVSDLLAIALDDFSIRVVDVVTR--------KVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred -ceeeeeccCCCcc----------eeeeeehhhhhhhhcCceeEEEEEchhh--------hhhHHhhccccceeeeEeCC
Confidence 6666666544321 3666777888899999999999998763 2566777653 344455544
Q ss_pred CCc--C--cCCCCeEEEEEcCCCceeeecccceEEec----CCCCCeecccCCCceEEEee
Q 039790 548 TDA--S--PDGEHIVQIYCVQTQAIQQYALDLSQCLP----PPLENAELEKTDSNATRAFD 600 (1395)
Q Consensus 548 ~d~--~--~s~dg~V~lWdv~t~~i~~~~~~~~~cl~----~s~d~l~~~~sd~~v~~iWD 600 (1395)
|+ + ++-|++|++||+-|+.+.++-+-...|.. |..|-++..-.|..-+.+|-
T Consensus 587 -DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 587 -DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred -CCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 33 3 56799999999999988776544444533 55566777766755556883
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.9e-17 Score=186.95 Aligned_cols=237 Identities=18% Similarity=0.250 Sum_probs=176.6
Q ss_pred CCCEEEEEEcCCeEEEEECCCC----ceE------------------EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 227 NRNYICYGLKLGNIRILNIITA----LRS------------------LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~----~~~------------------~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.|+|+|.|+.|..|.|||+.-- ... .-.+|++.|.+|.|+-...+.|+|||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3689999999999999998631 000 123799999999996666789999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
||+.+|+ +..++.+|...|.++.|++....++.+|+ ++.+.+.|.+.....
T Consensus 271 WD~~~g~--------------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-------------- 322 (463)
T KOG0270|consen 271 WDVDTGK--------------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-------------- 322 (463)
T ss_pred EEcCCCC--------------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--------------
Confidence 9999998 55667789999999999999886666655 666666666532110
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
...-.-.+.|-.++|.+.....++++..||+|+-+|+|.. +++.+++.|.+ .|.+|+++ ..-..++++
T Consensus 323 ------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n----~~~p~~l~t 391 (463)
T KOG0270|consen 323 ------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVN----IQTPGLLST 391 (463)
T ss_pred ------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEec----CCCCcceee
Confidence 0011145678999999998889999999999999999985 99999999998 99999998 666666666
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEcCCCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
++.|+.|++|++....+.. ...+.++... .++.++.++ ..+|+.|+..+.++|||+-++.
T Consensus 392 ~s~d~~Vklw~~~~~~~~~--------v~~~~~~~~r-----------l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKS--------VKEHSFKLGR-----------LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccccceEEEEeecCCCCcc--------cccccccccc-----------eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 7799999999997652210 0111111110 112344443 3567788888899999997754
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.7e-17 Score=187.27 Aligned_cols=252 Identities=19% Similarity=0.271 Sum_probs=179.3
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCc---ccccceeeeeCCCCCEEEEEEecC-CCEEEE
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQ---LEVTPITKYISDPGLVLGRQIAVN-RNYICY 233 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~---~~~~~i~~l~~h~~~V~~va~Spd-g~~Las 233 (1395)
+.++|.|..|..|.+||++--+--+= .+.. |....+ ..++.-..-.+|++.|..++|..+ .+.||+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P-------~~~L---Gs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS 261 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLP-------CVTL---GSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS 261 (463)
T ss_pred cceEEEeccCceeEEecccccccccc-------ceee---chhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe
Confidence 37899999999999999652211000 0000 100000 011111223479999999999875 468999
Q ss_pred EEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|+.|.+|++||+.+| +..++..|.+.|.++.|++....+|++|+.|++|.+.|.+...+. + ..++
T Consensus 262 gsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-------~---~~wk---- 327 (463)
T KOG0270|consen 262 GSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-------G---KEWK---- 327 (463)
T ss_pred cCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-------C---ceEE----
Confidence 999999999999998 577888899999999998889999999999999999999953311 0 0122
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEc-CCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDS-NRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
..+.|-.+.|++.....+.++.+++++++.+ +..++ ++..+..|.+.|.+|+++..-+.+
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-------------------~vwt~~AHd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-------------------PVWTLKAHDDEISGLSVNIQTPGL 388 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-------------------ceeEEEeccCCcceEEecCCCCcc
Confidence 2455778999999998888887766666544 33332 277888999999999999988889
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEec--CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|+|++.|+.|++|++..-.+-.+.. -.-+ ...|.++. |+-.++++.|+..+.++|||+.+.
T Consensus 389 l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~-rl~c~~~~----~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDSPKSVKEHSFKLG-RLHCFALD----PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eeeccccceEEEEeecCCCCccccccccccc-ceeecccC----CCcceEEEecCccceEEEeecccC
Confidence 9999999999999987554322221 1122 45555665 665554444547889999999876
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.2e-18 Score=205.58 Aligned_cols=196 Identities=20% Similarity=0.285 Sum_probs=168.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..|.+|...|.|+.|+.+..+|+.|+.+|+|++||++.+. +++|.||...+.+|.| +|-+.++++|+.|+.+++|
T Consensus 61 ~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f-~P~~~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 61 NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF-HPYGEFFASGSTDTDLKIW 139 (825)
T ss_pred chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee-ccceEEeccccccccceeh
Confidence 4455689999999999999999999999999999999999874 7899999999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|++... |...++.|...+.++.|+|+|.++..++ ++.++.+|+...++.
T Consensus 140 D~Rk~G--------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~---------------- 188 (825)
T KOG0267|consen 140 DIRKKG--------------CSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKL---------------- 188 (825)
T ss_pred hhhccC--------------ceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeeccccccc----------------
Confidence 999655 5667777888999999999997555544 455555555444432
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...|.+|.+.|..+.|+|.. .++++|+.|++|++||+++...+...+.... .|.++.|+ |++..++++.
T Consensus 189 ---~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~-~v~~~~fn----~~~~~~~~G~ 257 (825)
T KOG0267|consen 189 ---SKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSGKPETD-GVRSLAFN----PDGKIVLSGE 257 (825)
T ss_pred ---ccccccccccccccccCchh-hhhccCCCCceeeeeccceeEEeeccCCccC-Cceeeeec----CCceeeecCc
Confidence 56678899999999999987 8999999999999999999888888887766 89999999 9999888743
No 140
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=1.9e-17 Score=197.09 Aligned_cols=243 Identities=16% Similarity=0.251 Sum_probs=179.7
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCC-----ceEEeccC---CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITA-----LRSLLRGH---TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~-----~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
..+...++-..|+.++. ..+.||.+... +...+++. .-.+.+|+|..-+.++|++|+..|.|-+||+....
T Consensus 43 nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred ceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 44455677777777776 46777776653 22222221 12466788976778999999999999999998621
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
. -..+..+..|+..+.+++||+...+++.+|+.++.++.|+.+..+. ...
T Consensus 122 r-----------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-------------------~~t 171 (839)
T KOG0269|consen 122 R-----------NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-------------------KST 171 (839)
T ss_pred c-----------chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-------------------ccc
Confidence 0 0134567789999999999999998888888666666555443322 455
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
+.+....|.+|.|+|..+++|+++...|.+++||+|.. ++...+.+|.| +|.|+.|+ |++.||++|| .|++|+
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwh----Pnr~~lATGG-RDK~vk 245 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWH----PNREWLATGG-RDKMVK 245 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeec----CCCceeeecC-CCccEE
Confidence 66788899999999987789999999999999999985 77888999998 99999998 9999999988 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEe--CCCeEEEEEcCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANA--KKNAIYAIHMDY 519 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs--~Dg~I~iWdl~~ 519 (1395)
|||+.+.+. +.+.++. .. +....+.|-|+.. +|++++ .|-.|+|||+..
T Consensus 246 iWd~t~~~~----------~~~~tIn--Ti--------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 246 IWDMTDSRA----------KPKHTIN--TI--------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred EEeccCCCc----------cceeEEe--ec--------ceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 999987621 2222222 11 1122577777655 555555 588899999975
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.2e-16 Score=181.37 Aligned_cols=248 Identities=16% Similarity=0.215 Sum_probs=192.5
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--ceEEeccCC-CCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--LRSLLRGHT-QRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--~~~~l~~H~-~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+..-...|.+++|+.+.+.||.+-.||.|-||++..+ +...+.++. ..|-+++| . ++..|.|.+.+|.|.-||+.
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W-~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAW-A-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEE-c-cCCeEEeecCCceEEEEecc
Confidence 3345588999999999999999999999999999987 455666654 57999999 5 56788899999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+++ .+.......+.+.+++.+|.+..+.++|.+|.++.+.. ..+.. .-
T Consensus 99 ~lk--------------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~-~p~~I-----------------~~ 146 (691)
T KOG2048|consen 99 TLK--------------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSI-GPDKI-----------------TY 146 (691)
T ss_pred cCc--------------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEec-CCceE-----------------EE
Confidence 987 44445556778899999999976666666663333322 22211 11
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-----CC--CCCCeeEEEEeecCCCCCcEEEE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-----PY--DGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-----~h--~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
...+...++.|.+++|++++ ..|++|+.||.|++||+.++..++... .. +..-|++|.|. .++ .|++
T Consensus 147 ~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L----rd~-tI~s 220 (691)
T KOG2048|consen 147 KRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL----RDS-TIAS 220 (691)
T ss_pred EeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe----ecC-cEEE
Confidence 34455567899999999998 889999999999999999998777221 11 11268899997 454 4555
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|..-|+|++||...+ ..++.+..|...+.+ ++..+++.++++++.|+.|.-+...++.
T Consensus 221 -gDS~G~V~FWd~~~g------------TLiqS~~~h~adVl~---------Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 221 -GDSAGTVTFWDSIFG------------TLIQSHSCHDADVLA---------LAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred -ecCCceEEEEcccCc------------chhhhhhhhhcceeE---------EEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 668999999999988 888888888877644 8888999999999999999998887754
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.1e-15 Score=177.99 Aligned_cols=397 Identities=14% Similarity=0.140 Sum_probs=242.6
Q ss_pred CCCCeEEeecCCCCEEEEeC----------------------cCCCCCee-ee-CceE--EEEEeccCCCccCcccccce
Q 039790 156 PPSDSTVVIPSAPPVRLRSS----------------------KVPKGRHL-IG-NHSV--YDIDVRLDGEVQPQLEVTPI 209 (1395)
Q Consensus 156 ~p~~~Las~s~Dg~Vrlwd~----------------------~sp~Gr~L-~G-~~~v--~~v~~~~~G~~~~~~~~~~i 209 (1395)
..+..||.+-.||.|.+|.+ |.+.||++ .| +..| ||+ ..++++
T Consensus 35 ~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl-----------~~lk~~ 103 (691)
T KOG2048|consen 35 HKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL-----------HTLKQK 103 (691)
T ss_pred ccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec-----------ccCcee
Confidence 33466788888888888873 33445554 22 2222 333 234677
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce---EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALR---SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~---~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
..+....+.|++++.++.++.++.||.||.+..++...+.+ ..|.-.+++|.+++| .+++..|++|+.||.|++||
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw-~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW-NPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe-cCCccEEEecccCceEEEEE
Confidence 77888889999999999999999999999888888777753 345556789999999 89999999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecC---CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILAD---GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~---~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
...+.... +...++.+- ....|.++.|-.++ .+++|...+.+.+|+...+.-
T Consensus 183 ~~~~~t~~---------~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTL-------------- 237 (691)
T KOG2048|consen 183 VKSGQTLH---------IITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTL-------------- 237 (691)
T ss_pred cCCCceEE---------EeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcch--------------
Confidence 99987211 112222221 23345566666444 455555555555555443321
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce----eEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP----LAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~----l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
++.+..|.+.|.|++..+++ .++++++.|+.|.-|....+.. ......|.. .|.+++.. ++ .|
T Consensus 238 -----iqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h-dvrs~av~----~~--~l 304 (691)
T KOG2048|consen 238 -----IQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH-DVRSMAVI----EN--AL 304 (691)
T ss_pred -----hhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcc-cceeeeee----cc--eE
Confidence 45566799999999999987 7999999999998887665432 222335554 78999886 33 66
Q ss_pred EEEecCCCeEEEEECCCCCC--CCCCC-----Cc----ccccEEEEEeccCccccc-------------------ccccc
Q 039790 440 ITGGPLNRELKIWASAEEEG--WLLPS-----DI----ESWKCTQTLELKSSAELR-------------------LEDAF 489 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~--~~~~~-----~~----~~~~~l~tl~~h~~~i~~-------------------~~~~~ 489 (1395)
+++| .|.++.+-..+.... ...+. +. ...+.+..+..|...... ....-
T Consensus 305 ~sgG-~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~ 383 (691)
T KOG2048|consen 305 ISGG-RDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKE 383 (691)
T ss_pred Eecc-eeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCcc
Confidence 6655 787777665543100 00000 00 011111111122111110 01111
Q ss_pred cceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC--cC-CCCeEEEEEcCCC
Q 039790 490 FNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS--PD-GEHIVQIYCVQTQ 566 (1395)
Q Consensus 490 ~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s-~dg~V~lWdv~t~ 566 (1395)
...+.+.||+|++|+-+.- ..++||++.+........++.+..+......++|+... +.+ .+ .+..+.++++.+.
T Consensus 384 nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~-~k~~~~s~~~~~le~~el~~p 461 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDK-NKLFLVSKNIFSLEEFELETP 461 (691)
T ss_pred ceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecC-ceEEEEecccceeEEEEecCc
Confidence 2346889999999988764 45889999875543334444444444445555666544 221 23 4566777777665
Q ss_pred ceeeec-------ccceEEecCCCCC--eecccCCCceEEEeecCCCCc
Q 039790 567 AIQQYA-------LDLSQCLPPPLEN--AELEKTDSNATRAFDVANPDG 606 (1395)
Q Consensus 567 ~i~~~~-------~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~tg~~ 606 (1395)
...+.. .+...-+..++++ +++..+. +.+.+|++.+++.
T Consensus 462 s~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~-g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 462 SFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR-GQIFVYNLETLES 509 (691)
T ss_pred chhhhhccccccCCCcceeEEEcCCCCEEEEEecc-ceEEEEEccccee
Confidence 332211 1111123344444 6666655 6666999987774
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=5.3e-17 Score=179.55 Aligned_cols=210 Identities=16% Similarity=0.264 Sum_probs=162.3
Q ss_pred CCCCCEEEEEEecCC--CEEEEEEcCCeEEEEECCC-----------------CceEEeccCCCCeEEEEEeeCCCCEEE
Q 039790 214 SDPGLVLGRQIAVNR--NYICYGLKLGNIRILNIIT-----------------ALRSLLRGHTQRVTDMAFFAEDVHLLA 274 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg--~~LasGs~DG~IrIWd~~~-----------------~~~~~l~~H~~~V~slaf~s~dg~~La 274 (1395)
.|.+.|..+..++-| .+.|+=+..|.|+|||+.. ..+.++.+|.+.=+.|+|++.....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 577788887777644 5556667889999999853 146788999999999999544445688
Q ss_pred EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 275 SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 275 Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
||..-+.|++|...+|. |...-..+..|...|-.++|+|....+|++|+-++.+++|+.+.+..
T Consensus 229 sGDc~~~I~lw~~~~g~-----------W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~----- 292 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGS-----------WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK----- 292 (440)
T ss_pred cCccccceEeeeeccCc-----------eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-----
Confidence 99888999999999876 33333344458889999999999988888887665555555444321
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC---CceeEEecCCCCCCeeEEEEeec
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK---STPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s---g~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
+.....+.|.+.|+-|.|+..- .+||+|+.||+++|||+|. ++++.+|+.|.. +|++|.|+
T Consensus 293 ------------~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~-- 356 (440)
T KOG0302|consen 293 ------------KAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWH-- 356 (440)
T ss_pred ------------cceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEec--
Confidence 1134457899999999999987 5999999999999999986 688999999998 99999998
Q ss_pred CCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 432 PHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|....++.+++.|.+|.|||+...
T Consensus 357 --p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 357 --PHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred --cccCceEEeccCCCcEEEEEeecc
Confidence 554433333449999999999754
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.73 E-value=7.8e-17 Score=178.28 Aligned_cols=228 Identities=17% Similarity=0.230 Sum_probs=164.5
Q ss_pred eccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCC-CCCCc-ccccceEEEEEEecCCCCCccEEEEeCCCCe-
Q 039790 253 LRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPD-EEDKP-QILGKIVVAIQILADGDSVHPRVCWHPHKQE- 328 (1395)
Q Consensus 253 l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~-~~~~~-~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~- 328 (1395)
..+|.+.|+.+.-... +..+.++=+..|.|+|||+...-. +.... .........+..+..|...-+.++|+|-..-
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 3457777777666222 456777788899999999875321 00000 0011223356677788888899999995544
Q ss_pred EEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 329 ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 329 lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
++.+-..+.|+.|.... +. |..- ..-|.+|...|-++.|||.....|+|||.||+|+|||+|.
T Consensus 227 LlsGDc~~~I~lw~~~~-g~--------------W~vd--~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPST-GS--------------WKVD--QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred cccCccccceEeeeecc-Cc--------------eeec--CccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 44443455566655433 22 1111 2345679999999999998878999999999999999999
Q ss_pred C---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc
Q 039790 409 S---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL 485 (1395)
Q Consensus 409 g---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~ 485 (1395)
+ .++.+ +.|.+ -|+.|.|+ -+-.+|+++| .||+++|||++.. ...+.+.+|+.|...+++
T Consensus 290 ~~~~~~~~~-kAh~s-DVNVISWn----r~~~lLasG~-DdGt~~iwDLR~~---------~~~~pVA~fk~Hk~pIts- 352 (440)
T KOG0302|consen 290 GPKKAAVST-KAHNS-DVNVISWN----RREPLLASGG-DDGTLSIWDLRQF---------KSGQPVATFKYHKAPITS- 352 (440)
T ss_pred CCccceeEe-eccCC-ceeeEEcc----CCcceeeecC-CCceEEEEEhhhc---------cCCCcceeEEeccCCeeE-
Confidence 8 45555 88988 99999998 5555677755 9999999999987 555889999999988765
Q ss_pred cccccceEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 486 EDAFFNQVVALNR-AGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 486 ~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
+.|+| +...|++++.|+.|.|||+.....
T Consensus 353 --------ieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 353 --------IEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred --------EEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 77765 456888889999999999987544
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=9e-18 Score=208.28 Aligned_cols=240 Identities=17% Similarity=0.244 Sum_probs=184.5
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC-EEEEEEcC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN-YICYGLKL 237 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~-~LasGs~D 237 (1395)
-.|+.|..||.|.+|+... .+..-+...+.++..|.+.|.++.|++... +||+|+.|
T Consensus 81 GlIaGG~edG~I~ly~p~~----------------------~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPAS----------------------IIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred ceeeccccCCceEEecchh----------------------hccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC
Confidence 3588888899999988331 111223356778889999999999999654 99999999
Q ss_pred CeEEEEECCCCc-eEEe--ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC-
Q 039790 238 GNIRILNIITAL-RSLL--RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG- 313 (1395)
Q Consensus 238 G~IrIWd~~~~~-~~~l--~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~- 313 (1395)
|.|.|||++.-. -..+ ..-.+.|.+|+|+....++|++++.+|++.|||++..+. + +.+....
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-----------i--i~ls~~~~ 205 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-----------I--IKLSDTPG 205 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-----------c--cccccCCC
Confidence 999999998742 1111 124568999999767778999999999999999998751 1 1121111
Q ss_pred CCCccEEEEeCCCCeEEEEEeCC----eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 314 DSVHPRVCWHPHKQEILMLAIGN----RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~~----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
...+..+.|||++..-++++.++ .|..||.+.... +++++.+|...|.++.|++.+.
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-------------------P~k~~~~H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-------------------PLKILEGHQRGILSLSWCPQDP 266 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-------------------chhhhcccccceeeeccCCCCc
Confidence 23466899999988666665543 244455433222 2677789999999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.+|+|++.|++|.+|+..+|+.+..+....+ |+..|.|+ |....++++.+.||.|.||.+...
T Consensus 267 ~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~----pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 267 RLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWC----PRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred hhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeec----CCCcchhhhheeccceeeeeeecC
Confidence 9999999999999999999999999987554 99999999 777766666779999999999876
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.7e-16 Score=182.24 Aligned_cols=309 Identities=14% Similarity=0.139 Sum_probs=210.7
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCC-EEEEEECCCc
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVH-LLASASVDGR 281 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~-~LaSgs~Dgt 281 (1395)
+...+-..|.||.+.|.|+...+.|.+||+|+.||+||||.+.+| |+.++. ..+.|.||+| .+.+. .++.....+.
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw-~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAW-NPLSDLCVLAVAVGEC 465 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEe-cCCCCceeEEEEecCc
Confidence 445666789999999999999999999999999999999999999 444443 4568999999 55443 3444444555
Q ss_pred EEEEECCCCCCCCCCc---------cccc------ceE--------EEEEEecCCCCCccEEEEeCCCCeEEEEEeCC--
Q 039790 282 FFIWNITEGPDEEDKP---------QILG------KIV--------VAIQILADGDSVHPRVCWHPHKQEILMLAIGN-- 336 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~---------~~~~------~~i--------~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-- 336 (1395)
+.|-+..-|..+...+ .... .|. ..+.+.-.+...+..+.||..|.+|.+++.++
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 7777766663221110 0000 111 11234445677888999999999998887644
Q ss_pred -eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe
Q 039790 337 -RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL 415 (1395)
Q Consensus 337 -~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl 415 (1395)
.+++....+... ..-|....+.|.++.|+|.. .+|+.++ -..|+|||+..+..++.+
T Consensus 546 ~~VliHQLSK~~s--------------------Q~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvKkL 603 (733)
T KOG0650|consen 546 KSVLIHQLSKRKS--------------------QSPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVKKL 603 (733)
T ss_pred ceEEEEecccccc--------------------cCchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHHHH
Confidence 344444433221 12233456789999999987 4565554 467999999998888887
Q ss_pred cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 416 RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
..... +|.+++.+ |.|..|+.++ .|+.+..||+... .+..+++..|...++. ++
T Consensus 604 ~tg~k-wiS~msih----p~GDnli~gs-~d~k~~WfDldls-----------skPyk~lr~H~~avr~---------Va 657 (733)
T KOG0650|consen 604 LTGSK-WISSMSIH----PNGDNLILGS-YDKKMCWFDLDLS-----------SKPYKTLRLHEKAVRS---------VA 657 (733)
T ss_pred hcCCe-eeeeeeec----CCCCeEEEec-CCCeeEEEEcccC-----------cchhHHhhhhhhhhhh---------hh
Confidence 76665 99999997 9999999865 9999999999754 2667888888877655 88
Q ss_pred EeCCCCEEEEEeCCCeEEEEEcCCCC-CCCCcceeeeeeeecccc-----EEEEecCCC-CcC--cCCCCeEEEEE
Q 039790 496 LNRAGLFLLANAKKNAIYAIHMDYGP-NPASTRMDYIAEFTVTMP-----ILSLTGTTT-DAS--PDGEHIVQIYC 562 (1395)
Q Consensus 496 ~S~dg~~LaSgs~Dg~I~iWdl~~g~-~~~~~~~~~i~~f~~~~~-----ils~~~~~~-d~~--~s~dg~V~lWd 562 (1395)
|++.=.++++|+.||++.|++-.--. ....+.+..+....++.. ++....... .++ +.+||+|++|+
T Consensus 658 ~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 658 FHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred hccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 88888999999999999999854211 112233444444444422 222222220 111 34677888874
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=2.2e-16 Score=179.08 Aligned_cols=230 Identities=16% Similarity=0.161 Sum_probs=179.6
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
+....+. .-.|++......|+++|+..|.|+|||+... +.+.+++|...|++|.| .....||++++..|.|.|..+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~Y-N~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDY-NNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred eeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEe-cCCcceeEEeccCCcEEEEec
Confidence 3344443 3345555555689999999999999999976 46688999999999999 777789999999999999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCC-CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADG-DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~-~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
.++... ..+.+. ...+.-+.|++....++..+++++++.+|+.......
T Consensus 151 ~t~~~t--------------t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---------------- 200 (673)
T KOG4378|consen 151 KTKQKT--------------TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---------------- 200 (673)
T ss_pred ccCccc--------------cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----------------
Confidence 988622 222232 3445578999999999999888887777775543221
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
......|..+...|+|+|..+.+|++.+.|..|.+||++..+....+... . +..+|+|. ++|.+|+++ ...
T Consensus 201 --~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~-Plstvaf~----~~G~~L~aG-~s~ 271 (673)
T KOG4378|consen 201 --FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-H-PLSTVAFS----ECGTYLCAG-NSK 271 (673)
T ss_pred --cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec-C-Ccceeeec----CCceEEEee-cCC
Confidence 33445699999999999999889999999999999999988777777643 3 89999999 999988885 489
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
|.|..||++.. ...+.++..|...+. +++|-+..
T Consensus 272 G~~i~YD~R~~-----------k~Pv~v~sah~~sVt---------~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRST-----------KAPVAVRSAHDASVT---------RVAFQPSP 305 (673)
T ss_pred ceEEEEecccC-----------CCCceEeeeccccee---------EEEeeecc
Confidence 99999999865 256777777776654 37776554
No 148
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.6e-16 Score=176.16 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=208.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC-E
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN-Y 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~-~ 230 (1395)
+++.|..+.|++++.|+++|++.+. |+.- ..+..+.-....|.+..|+++|. .
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvD---------------------Gk~N-----~~lqS~~l~~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVD---------------------GKVN-----PKLQSIHLEKFPIQKAEFAPNGHSV 272 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEec---------------------CccC-----hhheeeeeccCccceeeecCCCceE
Confidence 4445555899999999999998843 1111 12223333446788899999999 8
Q ss_pred EEEEEcCCeEEEEECCCCce---EEeccCCC-CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 231 ICYGLKLGNIRILNIITALR---SLLRGHTQ-RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~~---~~l~~H~~-~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+++++....+++||+.++++ ..+.++.. .+..... ++++++|+..|..|.|.+....++. ++..
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV-Shd~~fia~~G~~G~I~lLhakT~e-----------li~s 340 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV-SHDSNFIAIAGNNGHIHLLHAKTKE-----------LITS 340 (514)
T ss_pred EEecccceEEEEeeccccccccccCCCCcccchhheeEe-cCCCCeEEEcccCceEEeehhhhhh-----------hhhe
Confidence 99999999999999999854 34455553 4666777 8999999999999999999988877 3333
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC--CeEEEEE
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG--EITELSM 384 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~--~V~slaf 384 (1395)
+++ ++.+..++|+.++..++++|.++.+++|+.....- ++.+. -.+ .-++++.
T Consensus 341 ~Ki----eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~--------------------~~rf~-D~G~v~gts~~~ 395 (514)
T KOG2055|consen 341 FKI----EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC--------------------LHRFV-DDGSVHGTSLCI 395 (514)
T ss_pred eee----ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce--------------------EEEEe-ecCccceeeeee
Confidence 333 45678899999999999999999999998865421 23332 122 3467777
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCC------CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec-CCCeEEEEECCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRK------STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP-LNRELKIWASAEE 457 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~s------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs-~Dg~I~IWDl~tg 457 (1395)
++++ .|||+||..|.|.|||..+ .+++.++..-.. .|+++.|+ +|.+.|+.++. .+..+|+-.+.+.
T Consensus 396 S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt-~Itsl~Fn----~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 396 SLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT-AITSLQFN----HDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred cCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe-eeeeeeeC----cchhhhhhhhhccccceEEEeccce
Confidence 8888 7999999999999999653 367777776665 89999999 99999887542 4678899888665
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.....|......+ . ...+++|||.|.+|+.|-.+|.|.+|.+.
T Consensus 470 ------------TVFsNfP~~n~~v-----g-~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 470 ------------TVFSNFPTSNTKV-----G-HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ------------eeeccCCCCCCcc-----c-ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 4444443333222 2 34579999999999999999999999875
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.72 E-value=4.9e-16 Score=181.58 Aligned_cols=322 Identities=15% Similarity=0.149 Sum_probs=203.3
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
+.|+.+-.||.|.+++... .++. ++...+..+..|.+.|.++.|.|....|++++.|.
T Consensus 65 HiLavadE~G~i~l~dt~~----------~~fr------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDs 122 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKS----------IVFR------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDS 122 (720)
T ss_pred ceEEEecCCCceeeecchh----------hhcc------------hhhhhhcccccccceeEeeccCCCceeEEEccCCc
Confidence 7899999999999998431 0111 23344566778999999999999778899999999
Q ss_pred eEEEEECCCCc-e--EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC-------CCcccccc--eEE-
Q 039790 239 NIRILNIITAL-R--SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE-------DKPQILGK--IVV- 305 (1395)
Q Consensus 239 ~IrIWd~~~~~-~--~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~-------~~~~~~~~--~i~- 305 (1395)
+|++||++++. . ..+.||.+.|.++||+.-|...|++|+.||.|.|||++...... ......+. ...
T Consensus 123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 99999999873 2 35899999999999977788899999999999999998654110 00011110 000
Q ss_pred ---EEEEecCCCCCccE---EEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc---
Q 039790 306 ---AIQILADGDSVHPR---VCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH--- 375 (1395)
Q Consensus 306 ---~l~~~~~~~~~v~~---v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h--- 375 (1395)
.+.....+...+.. +.+..|...|+.+|. |+.|.+||.++.... |..+ + .+...+..|
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~--~r~e-p---------~~~~~~~t~skr 270 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA--YRQE-P---------RGSDKYPTHSKR 270 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc--cccC-C---------CcccCccCcccc
Confidence 01111112222333 555667767777777 556666666553221 1000 0 001112223
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCCeeEE-EEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKS--TPLAVLRPYDGHPVNCV-TFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~~~V~sV-~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
...+.++.....|. +|...+.|+.|++||+++- .++..+.++....++-- ..+ ||+.+|+++ +.|....+|
T Consensus 271 s~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS----pd~~~l~Sg-Ssd~~ayiw 344 (720)
T KOG0321|consen 271 SVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS----PDDCSLLSG-SSDEQAYIW 344 (720)
T ss_pred eeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecC----CCCceEecc-CCCcceeee
Confidence 34577888888784 5544455999999999864 56666666543222111 223 899999985 499999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe-CCCCEEEEEeCCCeEEEEEcCCCCCCC------C
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN-RAGLFLLANAKKNAIYAIHMDYGPNPA------S 525 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S-~dg~~LaSgs~Dg~I~iWdl~~g~~~~------~ 525 (1395)
.+.+. +.....+.+|.-.+.. ++|. ..-.-++++++|.+++||++..|-.+. .
T Consensus 345 ~vs~~-----------e~~~~~l~Ght~eVt~---------V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s 404 (720)
T KOG0321|consen 345 VVSSP-----------EAPPALLLGHTREVTT---------VRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDS 404 (720)
T ss_pred eecCc-----------cCChhhhhCcceEEEE---------EeeccccCCCceeeccCcceEEEeccCchhhccccccch
Confidence 99876 2334445666544433 4442 233345566999999999996543321 1
Q ss_pred cceeeeeeeeccccE
Q 039790 526 TRMDYIAEFTVTMPI 540 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~i 540 (1395)
....+..+|.++.+.
T Consensus 405 ~v~~~~~rfk~~~p~ 419 (720)
T KOG0321|consen 405 IVYEYSRRFKGHLPQ 419 (720)
T ss_pred hhhhhhhhhhccccc
Confidence 233455556555443
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.72 E-value=9.4e-15 Score=166.68 Aligned_cols=268 Identities=19% Similarity=0.232 Sum_probs=190.4
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
...|.|+.|.++|. +++|..+|.|.||+..+.. .+....|.+.|.+++. -.+|. |+||+.|+.|..||-.-.+..+
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~-lr~Gt-llSGgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCM-LRDGT-LLSGGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEE-ecCcc-EeecCccceEEecccccccccc
Confidence 37899999999998 7899999999999997763 3333499999999999 77776 5569999999999933222110
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
+.+ .+..+.+..|+ +.+..++++...+.|+.-...+.. .....+
T Consensus 323 ------------~el-Pe~~G~iRtv~--e~~~di~vGTtrN~iL~Gt~~~~f---------------------~~~v~g 366 (626)
T KOG2106|consen 323 ------------TEL-PEQFGPIRTVA--EGKGDILVGTTRNFILQGTLENGF---------------------TLTVQG 366 (626)
T ss_pred ------------ccC-chhcCCeeEEe--cCCCcEEEeeccceEEEeeecCCc---------------------eEEEEe
Confidence 000 11112222222 233346766666666654432211 344567
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
|.+..+.++.+|+. ..|++++.|+.+++|+ ..+++.+..-.. ++.|+.|. |.| .++. |...|...+.|.
T Consensus 367 h~delwgla~hps~-~q~~T~gqdk~v~lW~--~~k~~wt~~~~d--~~~~~~fh----psg-~va~-Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 367 HGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DHKLEWTKIIED--PAECADFH----PSG-VVAV-GTATGRWFVLDT 435 (626)
T ss_pred cccceeeEEcCCCh-hheeeccCcceEEEcc--CCceeEEEEecC--ceeEeecc----Ccc-eEEE-eeccceEEEEec
Confidence 99999999999998 8999999999999999 555555554332 79999997 999 6666 559999999999
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeee
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEF 534 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f 534 (1395)
.+. ..+.. ......+ .++.|+++|.+|+.|+.|+.||||.+..+. ..+..+...
T Consensus 436 e~~------------~lv~~-~~d~~~l---------s~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g----~~y~r~~k~ 489 (626)
T KOG2106|consen 436 ETQ------------DLVTI-HTDNEQL---------SVVRYSPDGAFLAVGSHDNHIYIYRVSANG----RKYSRVGKC 489 (626)
T ss_pred ccc------------eeEEE-EecCCce---------EEEEEcCCCCEEEEecCCCeEEEEEECCCC----cEEEEeeee
Confidence 775 33332 2223222 369999999999999999999999998753 244445555
Q ss_pred eccccEEEEecCCCCcC----cCCCCeEEEE
Q 039790 535 TVTMPILSLTGTTTDAS----PDGEHIVQIY 561 (1395)
Q Consensus 535 ~~~~~ils~~~~~~d~~----~s~dg~V~lW 561 (1395)
.+ .++..++.+. |.. -++|-.|..|
T Consensus 490 ~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 490 SG-SPITHLDWSS-DSQFLVSNSGDYEILYW 518 (626)
T ss_pred cC-ceeEEeeecC-CCceEEeccCceEEEEE
Confidence 55 7777777766 443 3678889999
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.6e-17 Score=204.22 Aligned_cols=247 Identities=18% Similarity=0.191 Sum_probs=187.7
Q ss_pred CCEEEEEEecCCCE----EEEEEcCCeEEEEECCC---C----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 217 GLVLGRQIAVNRNY----ICYGLKLGNIRILNIIT---A----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 217 ~~V~~va~Spdg~~----LasGs~DG~IrIWd~~~---~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
...++++|.+.|.. ||.|+.||.|.+||... + .+..+..|++.|..+.|+.-.+++|++|+.||.|+||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34567888887665 89999999999999865 2 3567889999999999966667799999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCccccccCCCCCccCccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|+..-+. .+ ..+ .......|.++.|+..-.+||++++.. .+.+||.+....
T Consensus 145 Dlnn~~t--P~--~~~--------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p---------------- 196 (1049)
T KOG0307|consen 145 DLNKPET--PF--TPG--------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP---------------- 196 (1049)
T ss_pred ccCCcCC--CC--CCC--------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc----------------
Confidence 9997441 00 000 112346788999999999999988876 666666654322
Q ss_pred cccceEEEcccC--CCeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 365 LINGVQLVGKHD--GEITELSMCQWLTTRLASASLDG---TVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 365 ~~~~~~~l~~h~--~~V~slafspdg~~~LaSgs~Dg---~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
+..+..|. ..+..++|+|++.+.|++++.|. .|.+||+|.- .+++++.+|.. .|.++.|+ +.|..+
T Consensus 197 ----ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc---~~D~~l 268 (1049)
T KOG0307|consen 197 ----IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWC---PQDPRL 268 (1049)
T ss_pred ----ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccC---CCCchh
Confidence 12222222 45789999999988888888764 5999999974 78999999997 99999999 234488
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEc
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl 517 (1395)
|+++| .|+.|.+|+..++ +.+..|...+.+. .-+.|.+. -.++++.+.||.|-|+.+
T Consensus 269 llSsg-kD~~ii~wN~~tg------------Evl~~~p~~~nW~---------fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 269 LLSSG-KDNRIICWNPNTG------------EVLGELPAQGNWC---------FDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred hhccc-CCCCeeEecCCCc------------eEeeecCCCCcce---------eeeeecCCCcchhhhheeccceeeeee
Confidence 88888 9999999999998 7777776544332 23666554 458888999999999998
Q ss_pred CCCC
Q 039790 518 DYGP 521 (1395)
Q Consensus 518 ~~g~ 521 (1395)
..+.
T Consensus 327 ~~~~ 330 (1049)
T KOG0307|consen 327 QGTD 330 (1049)
T ss_pred ecCC
Confidence 7654
No 152
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.70 E-value=1.5e-15 Score=163.06 Aligned_cols=302 Identities=12% Similarity=0.040 Sum_probs=203.5
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCEEEEEE
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNYICYGL 235 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs 235 (1395)
-+.++++|+.||.|.+||+...+...-.+ +.... ........-.+|.-.|..+.|-| |...+.+++
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~----li~k~---------~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASG----LIAKH---------KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhcc----ceehe---------eeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 44899999999999999965432111100 00000 00001123357888999999998 667888999
Q ss_pred cCCeEEEEECCCCceEEeccCCCCeEEEEEeeC--CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 236 KLGNIRILNIITALRSLLRGHTQRVTDMAFFAE--DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
.|.+++|||.++-+......-.+.|++-+|++- .-.+|++|..|-.|++.|+..|. +-.++.+|
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--------------~sH~LsGH 187 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--------------FSHTLSGH 187 (397)
T ss_pred ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--------------ceeeeccc
Confidence 999999999999765544456678888888322 23467788888899999999998 45667789
Q ss_pred CCCccEEEEeCCCCeEEEEEeCCe-EEEEEcCCCCc-cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 314 DSVHPRVCWHPHKQEILMLAIGNR-ILKIDSNRVGK-GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~~~-ii~~d~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
...|..|.|+|...+++++|+-++ +..||.++... ....+.-... ....++.-..|.+.|+.++|+.++ .+
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k------~~p~~~~n~ah~gkvngla~tSd~-~~ 260 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK------RPPILKTNTAHYGKVNGLAWTSDA-RY 260 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc------cCccccccccccceeeeeeecccc-hh
Confidence 999999999999999999887555 55555544321 1111110000 000123345699999999999998 89
Q ss_pred EEEEeCCCcEEEEeCCCCce-eEEec--CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 392 LASASLDGTVKIWDDRKSTP-LAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~-l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+++++.|..+++|+..+|+- ++.+- .|.. -.+..|... .-+...++- -..|+.+.++.+-.+
T Consensus 261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~--~~~~~~~~~-~~~s~vfv~-~p~~~~lall~~~sg----------- 325 (397)
T KOG4283|consen 261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQ--TTSFAVHIQ-SMDSDVFVL-FPNDGSLALLNLLEG----------- 325 (397)
T ss_pred hhhccCccceEEeecccCcccccccccccccc--cccceEEEe-ecccceEEE-EecCCeEEEEEccCc-----------
Confidence 99999999999999988742 22221 1111 111111100 022222222 236789999999887
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
..++.++.|...+. +.++.++=....+|..|+.|+.|-.
T Consensus 326 -s~ir~l~~h~k~i~---------c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 326 -SFVRRLSTHLKRIN---------CAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -eEEEeeecccceee---------EEeecCchhhhhccccCCccccccc
Confidence 88899998865543 4777888888999999999999976
No 153
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.8e-16 Score=183.62 Aligned_cols=255 Identities=17% Similarity=0.217 Sum_probs=181.7
Q ss_pred cCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEE
Q 039790 153 TLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYIC 232 (1395)
Q Consensus 153 s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~La 232 (1395)
.+++..+.|++++.||++++|.+.- ..........+|.+|.+|.+.|.|+++..++.+++
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk--------------------~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQK--------------------AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcc--------------------cCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence 3344448999999999999999520 01111245588999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCC-----------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 233 YGLKLGNIRILNIITA-----------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 233 sGs~DG~IrIWd~~~~-----------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
+|+.||+|+.|++... ....+.||++.||.+++ +.....|++|+.||+||+|+...... ..+.
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~-s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~---- 434 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLAL-SSTKDRLLSCSSDGTVRLWEPTEESP-CTFG---- 434 (577)
T ss_pred eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeee-cccccceeeecCCceEEeeccCCcCc-cccC----
Confidence 9999999999965421 34578999999999999 77778899999999999999886551 1110
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-------c
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-------K 374 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-------~ 374 (1395)
.........++.+-.....+.++....+...++....... +.++. .
T Consensus 435 --------~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-------------------~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 435 --------EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-------------------LLIFESSASPGPR 487 (577)
T ss_pred --------CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh-------------------eeeccccCCCccc
Confidence 0011122223333222211222222222222222111111 11111 1
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
-...++-+.++|.+ .+.+++..|+.|+++|..++.+++....|.. .|+++++. |+|.+|+++. .|+.|++|.+
T Consensus 488 ~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~----~ng~~l~s~s-~d~sv~l~kl 560 (577)
T KOG0642|consen 488 RYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSLAID----PNGPYLMSGS-HDGSVRLWKL 560 (577)
T ss_pred ccCccceEEecCCC-CeeEecccCCceecccccccccchheeeccc-eecceeec----CCCceEEeec-CCceeehhhc
Confidence 12357778888987 6999999999999999999999999999997 99999999 9999999955 9999999999
Q ss_pred CCCCCCCCCCCcccccEEEEEeccC
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
... .|+.....|.
T Consensus 561 d~k------------~~~~es~~~r 573 (577)
T KOG0642|consen 561 DVK------------TCVLESTAHR 573 (577)
T ss_pred cch------------heeecccccc
Confidence 776 7877776665
No 154
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=184.78 Aligned_cols=249 Identities=16% Similarity=0.246 Sum_probs=173.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCC---------CCCee--eeCceEEEEEeccCCCccC----c-ccccceeeeeCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVP---------KGRHL--IGNHSVYDIDVRLDGEVQP----Q-LEVTPITKYISD 215 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp---------~Gr~L--~G~~~v~~v~~~~~G~~~~----~-~~~~~i~~l~~h 215 (1395)
+...+.+..|.+++.||.||.|+..+. .|..+ .+...-+-+....++.... . -....+.+|.
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft-- 96 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFT-- 96 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeee--
Confidence 566777889999999999999996654 23333 1100001111111111000 0 1122333443
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
-.+.+++|+.+|+++|.|+.|-.|++.+..+. ....+++|+++|.+|.| .+++++||+.+.||+|+|||+.++.+..
T Consensus 97 -lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~-~p~~~fLAvss~dG~v~iw~~~~~~~~~ 174 (933)
T KOG1274|consen 97 -LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSY-DPKGNFLAVSSCDGKVQIWDLQDGILSK 174 (933)
T ss_pred -ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeE-cCCCCEEEEEecCceEEEEEcccchhhh
Confidence 57889999999999999999999999999886 68899999999999999 8999999999999999999999987433
Q ss_pred CCcccccceEEEEEEecCC-CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 295 DKPQILGKIVVAIQILADG-DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~-~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
..... ....... ...+..++|+|+++.+++.+.++.+.++....... ...++ ..
T Consensus 175 tl~~v-------~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~-----------------~f~Lr-~~ 229 (933)
T KOG1274|consen 175 TLTGV-------DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL-----------------QFKLR-DK 229 (933)
T ss_pred hcccC-------CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee-----------------heeec-cc
Confidence 22100 0001111 34566899999999999999999999987643221 11011 12
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.|...+.++.|+|.| .|||+++.||.|-|||+.+... .... ..|++++|- |++..+
T Consensus 230 ~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~~----~~~~-~~Vc~~aw~----p~~n~i 285 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHER----HEFK-RAVCCEAWK----PNANAI 285 (933)
T ss_pred ccccceEEEEEcCCC-cEEeeeccCCcEEEEecccchh----cccc-ceeEEEecC----CCCCee
Confidence 234449999999998 8999999999999999987221 1112 379999997 776544
No 155
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.69 E-value=2e-14 Score=164.07 Aligned_cols=348 Identities=15% Similarity=0.150 Sum_probs=228.9
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCC--------eEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEE--
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLG--------NIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASA-- 276 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG--------~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSg-- 276 (1395)
.-+.|.+|...|.|+.++||.-.+++|-..| .|||||..+- .++.+......|++++|+..++.-++..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4467889999999999999999999875555 5999996553 4666666677899999965555444444
Q ss_pred -ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 277 -SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 277 -s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.+..+.|||...+.... -.......+..+.|+|.+..+++++..+.+..|......
T Consensus 176 ~s~~h~lSVWdWqk~~~~~--------------~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~-------- 233 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLG--------------PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS-------- 233 (626)
T ss_pred CCCccccchhhchhhhccC--------------cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCc--------
Confidence 334568899998766211 112234456678999999999999988888888553321
Q ss_pred CCCccCccccccceEEEcccC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 356 EPLKCPVDELINGVQLVGKHD-GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~-~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
+.+...+|++++ ..|.|++|.++| -+++|..+|.|.||+.++.+..+....|.+ .|.+++.. .
T Consensus 234 ---------l~k~~~~fek~ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~l----r 297 (626)
T KOG2106|consen 234 ---------LVKRQGIFEKREKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDG-GVFSLCML----R 297 (626)
T ss_pred ---------eEEEeeccccccceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCC-ceEEEEEe----c
Confidence 122233444443 579999999987 588999999999999988877777779998 99999998 7
Q ss_pred CCcEEEEEecCCCeEEEEECCCC--CCCCCCCCcc---------ccc---------E--------EEEEeccCccccccc
Q 039790 435 QHIVLITGGPLNRELKIWASAEE--EGWLLPSDIE---------SWK---------C--------TQTLELKSSAELRLE 486 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg--~~~~~~~~~~---------~~~---------~--------l~tl~~h~~~i~~~~ 486 (1395)
+|. |+++| .|+.|..||-.-. +.--+|.... ..- + ..+..+|...
T Consensus 298 ~Gt-llSGg-KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~de----- 370 (626)
T KOG2106|consen 298 DGT-LLSGG-KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDE----- 370 (626)
T ss_pred Ccc-EeecC-ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccc-----
Confidence 775 55566 9999999993221 0000111000 000 0 0111222221
Q ss_pred ccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCC--cCcCCCCeEEEEEcC
Q 039790 487 DAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTD--ASPDGEHIVQIYCVQ 564 (1395)
Q Consensus 487 ~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d--~~~s~dg~V~lWdv~ 564 (1395)
...++..++..++++++.|+.+++|+ +. ...+..+.+. +..+.++.... .+....|...|.|.+
T Consensus 371 ----lwgla~hps~~q~~T~gqdk~v~lW~-~~-----k~~wt~~~~d----~~~~~~fhpsg~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 371 ----LWGLATHPSKNQLLTCGQDKHVRLWN-DH-----KLEWTKIIED----PAECADFHPSGVVAVGTATGRWFVLDTE 436 (626)
T ss_pred ----eeeEEcCCChhheeeccCcceEEEcc-CC-----ceeEEEEecC----ceeEeeccCcceEEEeeccceEEEEecc
Confidence 23578889999999999999999999 21 2222333332 22222222211 113456788899999
Q ss_pred CCceeeecccc--eEEecCCCCC--eecccCCCceEEEeecC-CCCcceeeccCCC
Q 039790 565 TQAIQQYALDL--SQCLPPPLEN--AELEKTDSNATRAFDVA-NPDGSASLESSHG 615 (1395)
Q Consensus 565 t~~i~~~~~~~--~~cl~~s~d~--l~~~~sd~~v~~iWD~~-tg~~~~~l~g~~~ 615 (1395)
+..+.+.+.+. ..|+.+++++ ++++..|+.+- +|-+. .|.........+|
T Consensus 437 ~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy-iy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 437 TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY-IYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred cceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE-EEEECCCCcEEEEeeeecC
Confidence 98776655443 4577787776 88888776654 66654 4444444444444
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=165.45 Aligned_cols=255 Identities=17% Similarity=0.247 Sum_probs=189.4
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-------------ceEEec-cCCCCeEEEEEe------eCCCCEEEEE
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITA-------------LRSLLR-GHTQRVTDMAFF------AEDVHLLASA 276 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-------------~~~~l~-~H~~~V~slaf~------s~dg~~LaSg 276 (1395)
....++.|+|||..|.+-+.|..+++|++... ....++ -..+.|.+.+|. .|+.+++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 34457889999999999999999999997531 111111 134568888884 2677899999
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC--CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD--SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~--~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
+.|.-|++||.-+|+....+ +.+.+.+ ....+++|+|+|..|+ +|....|.+++..+.++.
T Consensus 130 sr~~PIh~wdaftG~lraSy-----------~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~----- 192 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASY-----------RAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRD----- 192 (406)
T ss_pred cccCceeeeeccccccccch-----------hhhhhHHhhhhheeEEecCCCCeEe-ecccceEEEeeccCCCCC-----
Confidence 99999999999999833222 1121111 1234799999997655 577888999998776642
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
|...... .+-..+..+-|.|++|+|-....++.|+...++-||.-..+.++..+.+|.+ .|+.++|. +
T Consensus 193 -----c~vy~t~--~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g-GvThL~~~----e 260 (406)
T KOG2919|consen 193 -----CPVYTTV--TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG-GVTHLQWC----E 260 (406)
T ss_pred -----Ccchhhh--hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC-CeeeEEec----c
Confidence 1111111 1112345678999999999877999999999999999999999999999998 99999998 9
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE--EeCCCCEEEEEeCCCeE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA--LNRAGLFLLANAKKNAI 512 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~--~S~dg~~LaSgs~Dg~I 512 (1395)
||..|+++...|-.|-.||++.. ...+-.|..|.+.. ++.+. ..++|.+|++|+.||.|
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~-----------~~pv~~L~rhv~~T--------NQRI~FDld~~~~~LasG~tdG~V 321 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYS-----------RDPVYALERHVGDT--------NQRILFDLDPKGEILASGDTDGSV 321 (406)
T ss_pred CcCeecccccCCCeEEEEeehhc-----------cchhhhhhhhccCc--------cceEEEecCCCCceeeccCCCccE
Confidence 99999998888999999999865 13334444444321 22343 46889999999999999
Q ss_pred EEEEcCC
Q 039790 513 YAIHMDY 519 (1395)
Q Consensus 513 ~iWdl~~ 519 (1395)
++||+..
T Consensus 322 ~vwdlk~ 328 (406)
T KOG2919|consen 322 RVWDLKD 328 (406)
T ss_pred EEEecCC
Confidence 9999987
No 157
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=3.2e-15 Score=182.57 Aligned_cols=263 Identities=16% Similarity=0.176 Sum_probs=187.2
Q ss_pred CCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCce-------EEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEE
Q 039790 216 PGLVLGRQIAV-NRNYICYGLKLGNIRILNIITALR-------SLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIW 285 (1395)
Q Consensus 216 ~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~~-------~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IW 285 (1395)
...|.|+.|+| +..+||.|+++|.|.+||+..+.. .....|...|+.+.| -.+ +.-|++++.||.|+.|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW-~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW-LQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE-eccCCCCceEEEecCCcEeee
Confidence 47899999999 778899999999999999988633 234568999999999 333 3459999999999999
Q ss_pred ECCCCCC-CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 286 NITEGPD-EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 286 dl~tg~~-~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+++.-.. .+.. .................++++.|.+.....|.+|.+ |.|+........... .
T Consensus 321 ~~~~l~~P~e~~---~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~------------~ 385 (555)
T KOG1587|consen 321 DTDMLSLPVEGL---LLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP------------E 385 (555)
T ss_pred eccccccchhhc---ccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc------------c
Confidence 8876431 0000 000000001111234567789999988766666665 445543433222110 0
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-KSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~-sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
...++...+..|.+.|+++.++|.+...|.+++ |.+|+||... ...++..+..+.. .|++++|| |...-++.+
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWS----ptrpavF~~ 459 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWS----PTRPAVFAT 459 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccc-eeeeeEEc----CcCceEEEE
Confidence 222335566779999999999999976777776 9999999987 6788888888876 79999999 888888877
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+..||.|.|||+... ....+.+.+.+.. +...+.|+++|.+|+.|...|.|++|++..
T Consensus 460 ~d~~G~l~iWDLl~~----------~~~Pv~s~~~~~~---------~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQD----------DEEPVLSQKVCSP---------ALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCCCceehhhhhcc----------ccCCccccccccc---------ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 878999999999764 1133333333321 223588899999999999999999999964
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=3.2e-15 Score=162.60 Aligned_cols=283 Identities=16% Similarity=0.186 Sum_probs=189.6
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCC------CCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEe
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVP------KGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIA 225 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp------~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~S 225 (1395)
--++|++.-|++.+.|..+++|.+-.. +++..... .+..++. ....|+...|-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~--------------------~~~~r~~-eg~tvydy~wY 113 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSK--------------------HLSYRYQ-EGETVYDYCWY 113 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCcccccc--------------------ceeEEec-cCCEEEEEEee
Confidence 457888999999999999999984321 11111101 1111111 22445555554
Q ss_pred -------cCCCEEEEEEcCCeEEEEECCCCce-EEec--cCCCC---eEEEEEeeCCCCEEEEEECCCcEEEEEC-CCCC
Q 039790 226 -------VNRNYICYGLKLGNIRILNIITALR-SLLR--GHTQR---VTDMAFFAEDVHLLASASVDGRFFIWNI-TEGP 291 (1395)
Q Consensus 226 -------pdg~~LasGs~DG~IrIWd~~~~~~-~~l~--~H~~~---V~slaf~s~dg~~LaSgs~DgtV~IWdl-~tg~ 291 (1395)
|+..++|+.+.+.-|++||..+|.+ ..++ .|-++ -.+++| ++||.+|+.|. ...|+|+|+ +.|.
T Consensus 114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F-s~DGeqlfaGy-krcirvFdt~RpGr 191 (406)
T KOG2919|consen 114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF-SPDGEQLFAGY-KRCIRVFDTSRPGR 191 (406)
T ss_pred eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe-cCCCCeEeecc-cceEEEeeccCCCC
Confidence 5778999999999999999999853 3443 35444 458999 99999998765 568999999 5555
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
....+.... +-..+..+.+.+++|+|.....+++|+-+.-+-+.... -..++.+
T Consensus 192 ~c~vy~t~~-------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-------------------~~~pl~l 245 (406)
T KOG2919|consen 192 DCPVYTTVT-------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-------------------GRRPLQL 245 (406)
T ss_pred CCcchhhhh-------cccccccceeeeeeccCCCCcceeeecccceeeeEecC-------------------CCCceee
Confidence 322221100 00122356678899999998777777655433332211 1233788
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
+.+|.+.|+.+.|+++| +.|.+|. .|-.|-.||+|. +.++..+..|.+..-..|.|..+ |+|++|++++ .||.|
T Consensus 246 lggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld--~~~~~LasG~-tdG~V 321 (406)
T KOG2919|consen 246 LGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLD--PKGEILASGD-TDGSV 321 (406)
T ss_pred ecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecC--CCCceeeccC-CCccE
Confidence 88999999999999999 6677766 578899999997 57888888887655667888644 8899999865 99999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
++||+.+.. ..+..+..+...+. .+++.|--.++++++
T Consensus 322 ~vwdlk~~g-----------n~~sv~~~~sd~vN---------gvslnP~mpilatss 359 (406)
T KOG2919|consen 322 RVWDLKDLG-----------NEVSVTGNYSDTVN---------GVSLNPIMPILATSS 359 (406)
T ss_pred EEEecCCCC-----------Cccccccccccccc---------ceecCcccceeeecc
Confidence 999998731 32333444443332 377777755555554
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.3e-15 Score=163.13 Aligned_cols=280 Identities=10% Similarity=0.056 Sum_probs=201.9
Q ss_pred cCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEE
Q 039790 153 TLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYIC 232 (1395)
Q Consensus 153 s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~La 232 (1395)
.+++-+..||+|..||.|-+||.. +. ..-+.+.+|...|++++||+||+.|+
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~-----------------T~-----------~iar~lsaH~~pi~sl~WS~dgr~Ll 81 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFD-----------------TF-----------RIARMLSAHVRPITSLCWSRDGRKLL 81 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEcc-----------------cc-----------chhhhhhccccceeEEEecCCCCEee
Confidence 345556788888888888888822 11 23456788999999999999999999
Q ss_pred EEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 233 YGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 233 sGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
+++.|..|.+||+..|. ++.++ ...+|+.+.|++.+.+.++.+-.+..-.+-++..+.- ..+....
T Consensus 82 tsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h------------~~Lp~d~ 148 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH------------SVLPKDD 148 (405)
T ss_pred eecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce------------eeccCCC
Confidence 99999999999999884 44444 5679999999888888877777777777777765430 0111111
Q ss_pred --CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC-CCeEEEEEecCC
Q 039790 312 --DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD-GEITELSMCQWL 388 (1395)
Q Consensus 312 --~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~-~~V~slafspdg 388 (1395)
.......+..|++.|.+++++...|.+.+++..... | +..++-.. ..|..+-|+..|
T Consensus 149 d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e------------~--------vas~rits~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 149 DGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE------------C--------VASFRITSVQAIKQIIVSRKG 208 (405)
T ss_pred ccccccccccccccCCCCEEEEecCcceEEEEecchhe------------e--------eeeeeechheeeeEEEEeccC
Confidence 111222345688999999999999999988875432 1 22232223 678899999988
Q ss_pred CcEEEEEeCCCcEEEEeCCCC-------c--eeEEecC--CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 389 TTRLASASLDGTVKIWDDRKS-------T--PLAVLRP--YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~sg-------~--~l~tl~~--h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.+|+.-+.|+.||.|+++.- . +.+.+.. .+. .-.+++|+ .+|.|++++...-..++||.-..|
T Consensus 209 -~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~-~Wk~ccfs----~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 209 -RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL-QWKKCCFS----GDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred -cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh-hhhheeec----CCccEEEeccccceeEEEEecCCc
Confidence 89999999999999997631 1 1111110 111 34688999 899999988777889999999888
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.+++.+.+..+...- -+.|.+-..+|++- ..|.||+|....-
T Consensus 283 ------------sLVKILhG~kgE~l~--------DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 283 ------------SLVKILHGTKGEELL--------DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ------------ceeeeecCCchhhee--------ecccccceeeeeec-cCCceEEEEeecc
Confidence 999999887644321 26677877888877 6788999998653
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.68 E-value=1.7e-15 Score=171.90 Aligned_cols=237 Identities=18% Similarity=0.207 Sum_probs=175.9
Q ss_pred EEEEEEecCCCEEEEE--EcCCeEEEEECCCC--ce---EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 219 VLGRQIAVNRNYICYG--LKLGNIRILNIITA--LR---SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 219 V~~va~Spdg~~LasG--s~DG~IrIWd~~~~--~~---~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+..+.|+.... |+++ +.|..|++|.-... .+ ..+.+. .-.|++. .....|+++||..++|+|||++...
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~-~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVAC-ASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhh-hhcceeeeccCcCceeeehhhHHHH
Confidence 77788877654 4444 56889999987654 22 222232 2233333 2234899999999999999999543
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
+.++..+|...|+++.|+..+.+|.++..+|.|++.......+.. .
T Consensus 113 --------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt--------------------~ 158 (673)
T KOG4378|consen 113 --------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT--------------------T 158 (673)
T ss_pred --------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc--------------------c
Confidence 556778899999999999999888888888888887765443321 1
Q ss_pred Ec-ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCCeeEEEEeecCCCCCc-EEEEEecCCCe
Q 039790 372 VG-KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RPYDGHPVNCVTFLIGPHPQHI-VLITGGPLNRE 448 (1395)
Q Consensus 372 l~-~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~ 448 (1395)
|. +....|.-+.|++....+|.+++.+|.|.+||+....+++.+ +.|.. +...|||+ |... +|++.| .|..
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA-P~~gicfs----psne~l~vsVG-~Dkk 232 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA-PCRGICFS----PSNEALLVSVG-YDKK 232 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC-CcCcceec----CCccceEEEec-ccce
Confidence 22 123456789999988678999999999999999988887765 47876 99999999 6555 566667 9999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|.+||++.. +...++..... ...++|+++|.+|++|...|.|+.||++.-+
T Consensus 233 i~~yD~~s~------------~s~~~l~y~~P----------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 233 INIYDIRSQ------------ASTDRLTYSHP----------LSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred EEEeecccc------------cccceeeecCC----------cceeeecCCceEEEeecCCceEEEEecccCC
Confidence 999999876 44444443221 1259999999999999999999999998743
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=3.9e-13 Score=160.08 Aligned_cols=315 Identities=20% Similarity=0.310 Sum_probs=212.0
Q ss_pred CEEEEEE-ecCCC-EEEEEEc-CCeEEEEECCC--CceEEeccCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCC
Q 039790 218 LVLGRQI-AVNRN-YICYGLK-LGNIRILNIIT--ALRSLLRGHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNITEGP 291 (1395)
Q Consensus 218 ~V~~va~-Spdg~-~LasGs~-DG~IrIWd~~~--~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~ 291 (1395)
.+..+.+ ++++. +++..+. |+.+++||... .....+..|...|.+++| .+++.++++++. |+.+++|++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPDGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEE-CCCCCEEEecCCCCCceEEEEcCCCc
Confidence 5566666 77777 5555444 99999999997 567889999999999999 888888998886 9999999999755
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEE-EeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILML-AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
.+.....|...+.++.|++++..++++ +.++.+..|+.. .+.. ..
T Consensus 190 --------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~-------------------~~ 235 (466)
T COG2319 190 --------------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKL-------------------LR 235 (466)
T ss_pred --------------eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcE-------------------Ee
Confidence 345555588899999999888755555 556666655332 1111 23
Q ss_pred -EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 371 -LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP-LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 371 -~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~-l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
.+.+|...+ ...|++++ .++++++.|+.+++||++.... +..+.+|.. .|.++.|. |++..+++++ .|+.
T Consensus 236 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~~~~~~-~d~~ 307 (466)
T COG2319 236 STLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFS----PDGKLLASGS-SDGT 307 (466)
T ss_pred eecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCc-cEEEEEEC----CCCCEEEEee-CCCc
Confidence 466787775 44899998 7899999999999999987764 555567765 99999998 8888998855 7799
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEe--ccCcccccccccccceEEEEeCCCCEEEEE-eCCCeEEEEEcCCCCCCCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLE--LKSSAELRLEDAFFNQVVALNRAGLFLLAN-AKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~--~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg-s~Dg~I~iWdl~~g~~~~~ 525 (1395)
+++||..+. ....... .|...+ ..+.+.+++..++.+ ..|+.+++|++....
T Consensus 308 ~~~~~~~~~------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---- 362 (466)
T COG2319 308 VRLWDLETG------------KLLSSLTLKGHEGPV---------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---- 362 (466)
T ss_pred EEEEEcCCC------------ceEEEeeecccCCce---------EEEEECCCCCEEEEeecCCCcEEeeecCCCc----
Confidence 999998876 4444444 444322 235554343555555 688999999988753
Q ss_pred cceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCceeeecc---cceEEecCCCCC-eecccCCCceEEEe
Q 039790 526 TRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQQYAL---DLSQCLPPPLEN-AELEKTDSNATRAF 599 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~~~~~---~~~~cl~~s~d~-l~~~~sd~~v~~iW 599 (1395)
.......... ...+.+.. ..... ...++.+.+|+........... .......+..+. ......+...+++|
T Consensus 363 -~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 363 -PLKTLEGHSN-VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred -eeEEecCCce-EEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 0011111110 11122222 10111 2467899999999987643222 233333333333 33334456777899
Q ss_pred ecCC
Q 039790 600 DVAN 603 (1395)
Q Consensus 600 D~~t 603 (1395)
+..+
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9887
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.7e-15 Score=156.44 Aligned_cols=244 Identities=18% Similarity=0.274 Sum_probs=174.5
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCC---------C--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIIT---------A--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~---------~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..|..-+|+|.++||+.|..+|.|.|+.++. + .+..+++|.++|+.++|+ ..+|++|+. |.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEe
Confidence 3455668999999999999999999999865 1 345668999999999993 567777765 999999
Q ss_pred ECCCCCC-CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 286 NITEGPD-EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 286 dl~tg~~-~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
..+.... ...++...- ....+.-.-.-..|+.+-..|..+.++.+|.++.++.||... ++.
T Consensus 87 ~W~E~~es~~~K~lwe~--~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i--------------- 148 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEV--KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-GRI--------------- 148 (325)
T ss_pred eehhhhhhccchhhhhh--cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-CEE---------------
Confidence 8876442 111111000 011111111224567788899999999999888888887743 221
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC---------CCCCCeeEEEEeecCCCC
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP---------YDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~---------h~~~~V~sV~fs~~~~pd 435 (1395)
.+.+.||++.|.++.--... ..+++|+.||++||||.++++++.++.. |-+.+|-+++-+
T Consensus 149 ----~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~------ 217 (325)
T KOG0649|consen 149 ----QREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN------ 217 (325)
T ss_pred ----EEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc------
Confidence 57889999999999984433 4799999999999999999999988753 444577777764
Q ss_pred CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE
Q 039790 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW 515 (1395)
..||+++| ...+.||+++.. .|..+|...... ..+.| +...+++++..+.|.-|
T Consensus 218 edWlvCGg--Gp~lslwhLrss------------e~t~vfpipa~v----------~~v~F--~~d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 218 EDWLVCGG--GPKLSLWHLRSS------------ESTCVFPIPARV----------HLVDF--VDDCVLIGGEGNHVQSY 271 (325)
T ss_pred CceEEecC--CCceeEEeccCC------------CceEEEecccce----------eEeee--ecceEEEeccccceeee
Confidence 67888754 678999999987 666666544321 12333 34567778888889888
Q ss_pred EcCC
Q 039790 516 HMDY 519 (1395)
Q Consensus 516 dl~~ 519 (1395)
.+..
T Consensus 272 ~l~G 275 (325)
T KOG0649|consen 272 TLNG 275 (325)
T ss_pred eecc
Confidence 8753
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=2e-15 Score=164.75 Aligned_cols=268 Identities=16% Similarity=0.218 Sum_probs=189.7
Q ss_pred CCCCEEEEEEecCC----CEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 215 DPGLVLGRQIAVNR----NYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 215 h~~~V~~va~Spdg----~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
|....+.++|+.|- -++|.|+.-|.|||.|+..+. ...+.+|.+.|+.|.|++.+.+++++|+.|.+||+|++.+
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 55566777887643 489999999999999999884 6789999999999999777789999999999999999999
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC------CccccccCCCCCc-cCc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV------GKGERFSAEEPLK-CPV 362 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~------~~~~~~s~~~~~~-~~~ 362 (1395)
.. ++..+--..+|.+.|.++.|+.++.+++++|.+..+..|..... .....|+.++..+ ...
T Consensus 168 ~~-----------Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt 236 (385)
T KOG1034|consen 168 DV-----------CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPT 236 (385)
T ss_pred Ce-----------EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCc
Confidence 87 22233334568889999999999999999999999999887621 1111222222110 000
Q ss_pred cccccc-eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-C-------------ceeEEecCCCCCCeeEEE
Q 039790 363 DELING-VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-S-------------TPLAVLRPYDGHPVNCVT 427 (1395)
Q Consensus 363 ~~~~~~-~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g-------------~~l~tl~~h~~~~V~sV~ 427 (1395)
-...-+ ...-..|...|-|+.|- | .++++-|.++.|..|-... + ..+.++.-... .|+-+.
T Consensus 237 ~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfir 312 (385)
T KOG1034|consen 237 PKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIR 312 (385)
T ss_pred cccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEE
Confidence 000000 12344689999999986 3 6899999999999997621 1 22344444444 677777
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|.-+ +-+++|+.++ ..|.|.+||++..+. ..+........+. .++-.+|+.||.+|+..+
T Consensus 313 f~~d--~~~~~la~gn-q~g~v~vwdL~~~ep---------~~~ttl~~s~~~~--------tVRQ~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 313 FAFD--PWQKMLALGN-QSGKVYVWDLDNNEP---------PKCTTLTHSKSGS--------TVRQTSFSRDGSILVLVC 372 (385)
T ss_pred Eeec--HHHHHHhhcc-CCCcEEEEECCCCCC---------ccCceEEeccccc--------eeeeeeecccCcEEEEEe
Confidence 6522 6678888866 999999999998722 1222222211111 223589999999999999
Q ss_pred CCCeEEEEEc
Q 039790 508 KKNAIYAIHM 517 (1395)
Q Consensus 508 ~Dg~I~iWdl 517 (1395)
+|++|.-||.
T Consensus 373 dd~~Vwrwdr 382 (385)
T KOG1034|consen 373 DDGTVWRWDR 382 (385)
T ss_pred CCCcEEEEEe
Confidence 9999999985
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.66 E-value=6.3e-15 Score=160.92 Aligned_cols=309 Identities=17% Similarity=0.170 Sum_probs=192.3
Q ss_pred EeccCCCCeEEEEEee----CCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe--cCCCCCccEEEEeCC
Q 039790 252 LLRGHTQRVTDMAFFA----EDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL--ADGDSVHPRVCWHPH 325 (1395)
Q Consensus 252 ~l~~H~~~V~slaf~s----~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~--~~~~~~v~~v~~sp~ 325 (1395)
...+|+..|..++|++ .....+++.|.+ ++.||...... .+..++.+ .+++...+.++|+-+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~-----------~ir~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDG-----------GIRLLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCcc-----------ceeeeeeccCCCCCcceEEEEEEec
Confidence 4457889999999942 123456666654 78888876432 22333333 345667778888765
Q ss_pred CC----eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcE
Q 039790 326 KQ----EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTV 401 (1395)
Q Consensus 326 ~~----~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~I 401 (1395)
.. .++++|.-|.|.+++.....- ...+.+|...|+.+.|+|+.+++|+++|.|..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~--------------------~~~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQC--------------------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhh--------------------ccceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 32 455556556666666543211 455778999999999999998999999999999
Q ss_pred EEEeCCCCceeEEec---CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC--CCCCCC----CcccccEE
Q 039790 402 KIWDDRKSTPLAVLR---PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE--GWLLPS----DIESWKCT 472 (1395)
Q Consensus 402 rIWDl~sg~~l~tl~---~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~--~~~~~~----~~~~~~~l 472 (1395)
|+||+++..|+..|- ||.+ .|.+|.|+ ++|.+|+++| .|.+|++|++...+ ..+..+ ..++....
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~----~~gd~i~ScG-mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pf 234 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRD-EVLSVDFS----LDGDRIASCG-MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPF 234 (385)
T ss_pred EEEeccCCeEEEEecccccccC-cEEEEEEc----CCCCeeeccC-CcceEEEEecChhHHhhhhhhhcccCCCCccCcC
Confidence 999999999999875 6776 99999999 9999999988 99999999998541 111000 00111000
Q ss_pred EEEeccCcc--cccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc-CCCCC-----CCCcceeeeeeeeccc-----c
Q 039790 473 QTLELKSSA--ELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM-DYGPN-----PASTRMDYIAEFTVTM-----P 539 (1395)
Q Consensus 473 ~tl~~h~~~--i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl-~~g~~-----~~~~~~~~i~~f~~~~-----~ 539 (1395)
-+...|-.. ....+..|+.+ +.| -|.++++-+.+|.|..|.. ..++. +.......+.+|.... .
T Consensus 235 pt~~~~fp~fst~diHrnyVDC-vrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 235 PTPKTHFPDFSTTDIHRNYVDC-VRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFI 311 (385)
T ss_pred CccccccccccccccccchHHH-HHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEE
Confidence 000000000 11122222222 222 2689999999999999997 33222 1222344566666553 2
Q ss_pred EEEEecCCCCcC--cCCCCeEEEEEcCCCceeee-------cccceEEecCCCCC-eecccCCCceEEEeecC
Q 039790 540 ILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQQY-------ALDLSQCLPPPLEN-AELEKTDSNATRAFDVA 602 (1395)
Q Consensus 540 ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~~~-------~~~~~~cl~~s~d~-l~~~~sd~~v~~iWD~~ 602 (1395)
.++|+... +.+ ....|.|++||+..-+-..+ ......-..|+.|+ +.+.-.|.+.+.-||..
T Consensus 312 rf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 312 RFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 34444443 333 24578999999988644211 11223344566665 44444466776678754
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.66 E-value=6e-15 Score=167.20 Aligned_cols=256 Identities=14% Similarity=0.139 Sum_probs=182.7
Q ss_pred cceeeeeCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcE
Q 039790 207 TPITKYISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV 282 (1395)
..+..+..|.+.|.++.|+| +-..|.+.++||+||.-|++++. +..+......+.++.| +.+...++.++.=|.+
T Consensus 225 d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~-~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 225 DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDF-SAESRSVLFGDNVGNF 303 (498)
T ss_pred CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccc-cCCCccEEEeecccce
Confidence 34567788999999999999 45678888999999999999873 3444434556788888 5555566667777799
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE-EEEcCCCCccccccCCCCCccC
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL-KIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii-~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
.+||++++..+ +....-|+..|+.++++|...+++++++-+... +||.+.......
T Consensus 304 ~~iD~R~~~s~-------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------- 360 (498)
T KOG4328|consen 304 NVIDLRTDGSE-------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------- 360 (498)
T ss_pred EEEEeecCCcc-------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----------
Confidence 99999998732 222334566889999999999888887766655 555554432210
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC----CCceeEEecCCCC---CC--eeEEEEeecC
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR----KSTPLAVLRPYDG---HP--VNCVTFLIGP 432 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~----sg~~l~tl~~h~~---~~--V~sV~fs~~~ 432 (1395)
++.....|...|.+..|||.|++ |+|.+.|.+|||||.. .-.++.++. |.. .+ .....|.
T Consensus 361 ------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~--- 429 (498)
T KOG4328|consen 361 ------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWD--- 429 (498)
T ss_pred ------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeC---
Confidence 12333459999999999999965 9999999999999983 334455554 321 12 3456787
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEeCCCe
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANAKKNA 511 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~Dg~ 511 (1395)
|+..+++++- .-..|-|+|-..+ +.+..|..... ..+..+..|+|-+. +++.+...|.
T Consensus 430 -P~~~li~vg~-~~r~IDv~~~~~~------------q~v~el~~P~~-------~tI~~vn~~HP~~~~~~aG~~s~Gk 488 (498)
T KOG4328|consen 430 -PDYNLIVVGR-YPRPIDVFDGNGG------------QMVCELHDPES-------STIPSVNEFHPMRDTLAAGGNSSGK 488 (498)
T ss_pred -CCccEEEEec-cCcceeEEcCCCC------------EEeeeccCccc-------cccccceeecccccceeccCCccce
Confidence 8888888755 7888999998877 65655544332 12334678899888 5555557888
Q ss_pred EEEEEcC
Q 039790 512 IYAIHMD 518 (1395)
Q Consensus 512 I~iWdl~ 518 (1395)
||||--.
T Consensus 489 i~vft~k 495 (498)
T KOG4328|consen 489 IYVFTNK 495 (498)
T ss_pred EEEEecC
Confidence 9999643
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=4.6e-13 Score=159.49 Aligned_cols=331 Identities=18% Similarity=0.279 Sum_probs=227.3
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--ceEEeccCCC-CeEEEEEeeCCCC-EEEEEEC-CCcEEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--LRSLLRGHTQ-RVTDMAFFAEDVH-LLASASV-DGRFFIW 285 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--~~~~l~~H~~-~V~slaf~s~dg~-~LaSgs~-DgtV~IW 285 (1395)
.+..|...+.++.|..++..++.++.|+.+.+|+...+ ....+.++.. .+..+.+...++. +++.++. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 45678899999999999999999999999999999988 4666766443 6777776323454 5555455 9999999
Q ss_pred ECCC-CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 286 NITE-GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 286 dl~t-g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
|+.. .. .......|...+..++|++++..++.++. ++.+..|+... ..
T Consensus 140 ~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------- 189 (466)
T COG2319 140 DLSTPGK--------------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GK--------------- 189 (466)
T ss_pred EecCCCe--------------EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-Cc---------------
Confidence 9987 33 45566677788889999999986666654 56666665533 11
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE-EecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
.+..+.+|...|.+++|++++..++++++.|+.|++||...+..+. .+.+|.. .+ ...|+ +++.+++++
T Consensus 190 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~----~~~~~~~~~ 259 (466)
T COG2319 190 ----PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFS----PDGSLLASG 259 (466)
T ss_pred ----eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeEC----CCCCEEEEe
Confidence 1566677999999999999883366666999999999999888888 6888976 54 33788 888777765
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCccccc-EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWK-CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~-~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+ .|+.+++||+... . ++..+..|...+ ..+.|.+++..+++++.|+.+.+|++..+.
T Consensus 260 ~-~d~~~~~~~~~~~------------~~~~~~~~~~~~~v---------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 260 S-SDGTIRLWDLRSS------------SSLLRTLSGHSSSV---------LSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred c-CCCcEEEeeecCC------------CcEEEEEecCCccE---------EEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 5 9999999999876 2 244444443332 246888888888889999999999887643
Q ss_pred CCCCcceeeee--eeeccccEEEEecCCCC--cC--c-CCCCeEEEEEcCCCce-eeeccc---ceEEecCCCCCeecc-
Q 039790 522 NPASTRMDYIA--EFTVTMPILSLTGTTTD--AS--P-DGEHIVQIYCVQTQAI-QQYALD---LSQCLPPPLENAELE- 589 (1395)
Q Consensus 522 ~~~~~~~~~i~--~f~~~~~ils~~~~~~d--~~--~-s~dg~V~lWdv~t~~i-~~~~~~---~~~cl~~s~d~l~~~- 589 (1395)
. ..... .+......+.+ . . + .+ . ..|+.+++|++..... ...... ...+..+ . ....+
T Consensus 318 ~-----~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 387 (466)
T COG2319 318 L-----LSSLTLKGHEGPVSSLSF-S-P-DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSS 387 (466)
T ss_pred e-----EEEeeecccCCceEEEEE-C-C-CCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEE
Confidence 2 11111 11111222233 2 1 1 11 1 3458899999998862 211111 2223333 3 32222
Q ss_pred cCCCceEEEeecCCCCcceeeccC
Q 039790 590 KTDSNATRAFDVANPDGSASLESS 613 (1395)
Q Consensus 590 ~sd~~v~~iWD~~tg~~~~~l~g~ 613 (1395)
......+.+|+.............
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~ 411 (466)
T COG2319 388 GSTDGTVRLWDLSTGSLLRNLDGH 411 (466)
T ss_pred ecCCCceEEEecccCeeeeeccCC
Confidence 345566779999988877666633
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=8e-15 Score=170.19 Aligned_cols=228 Identities=25% Similarity=0.308 Sum_probs=168.6
Q ss_pred ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-
Q 039790 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ- 327 (1395)
Q Consensus 249 ~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~- 327 (1395)
+-..++||++.|.+|.. .+.|.+|++|+.||+|+||.+.+|.| +..+.+ +..|.+|+|+|.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSv-dp~G~wlasGsdDGtvriWEi~TgRc-----------vr~~~~----d~~I~~vaw~P~~~~ 455 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISV-DPSGEWLASGSDDGTVRIWEIATGRC-----------VRTVQF----DSEIRSVAWNPLSDL 455 (733)
T ss_pred eeeeEeccCCeEEEEEe-cCCcceeeecCCCCcEEEEEeecceE-----------EEEEee----cceeEEEEecCCCCc
Confidence 45678999999999999 88999999999999999999999982 223222 34789999999876
Q ss_pred eEEEEEeCCeEEEEEcCCCCcccc------c-cC---CC-CCccCccc------cccceEEEcccCCCeEEEEEecCCCc
Q 039790 328 EILMLAIGNRILKIDSNRVGKGER------F-SA---EE-PLKCPVDE------LINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 328 ~lla~g~~~~ii~~d~~~~~~~~~------~-s~---~~-~~~~~~~~------~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
.+++++.++.+.+++.....+... | .. .. ......|. ...++++...|...|+.|.|+..| .
T Consensus 456 ~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-D 534 (733)
T KOG0650|consen 456 CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-D 534 (733)
T ss_pred eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-c
Confidence 677888888866666543311111 1 11 00 00111222 334456666799999999999999 8
Q ss_pred EEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 391 RLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 391 ~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
||++..-| ..|.|+++..+....-|.-..| .|.++.|. |...+|+++. -..|+|||+...
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FH----Ps~p~lfVaT--q~~vRiYdL~kq---------- 597 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFH----PSKPYLFVAT--QRSVRIYDLSKQ---------- 597 (733)
T ss_pred eEEEeccCCCcceEEEEecccccccCchhhcCC-ceeEEEec----CCCceEEEEe--ccceEEEehhHH----------
Confidence 99987764 4589999988766666655555 89999997 8888888854 688999999876
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
..+..+... +.+...+++++.|.-|+.|+.|+.+..+|+..+.
T Consensus 598 --elvKkL~tg---------~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 598 --ELVKKLLTG---------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred --HHHHHHhcC---------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 555444322 3344579999999999999999999999998764
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.64 E-value=2.3e-14 Score=160.64 Aligned_cols=300 Identities=18% Similarity=0.226 Sum_probs=194.6
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCe
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGN 239 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~ 239 (1395)
.|+||+.|..||+|-+.. ..++... ..+..+..+..|...|++|.|+++|.+||+|+.+|.
T Consensus 28 ~laT~G~D~~iriW~v~r-----------------~~~~~~~--~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNR-----------------SEPGGGD--MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred ceecccCccceeeeeeee-----------------cCCCCCc--eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence 789999999999998431 1111100 122445678889999999999999999999999999
Q ss_pred EEEEECC--------C-----C----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 240 IRILNII--------T-----A----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 240 IrIWd~~--------~-----~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
|.+|... + . ....+++|...|++++| ++++.++++++.|.++++||+..|.
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W-s~d~~~l~s~s~dns~~l~Dv~~G~----------- 156 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW-SPDSNFLVSGSVDNSVRLWDVHAGQ----------- 156 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc-cCCCceeeeeeccceEEEEEeccce-----------
Confidence 9999876 3 1 24578899999999999 9999999999999999999999998
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC-CCccCccccccceEEEcccCC----
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE-PLKCPVDELINGVQLVGKHDG---- 377 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~h~~---- 377 (1395)
.+....+|+..+..++|.|.++++..-+.+.....+............... ...........-.+.+ |++
T Consensus 157 ---l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf--hDeTlks 231 (434)
T KOG1009|consen 157 ---LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF--HDETLKS 231 (434)
T ss_pred ---eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--ecCchhh
Confidence 567788899999999999999888777776533322221110000000000 0000000000112222 332
Q ss_pred CeEEEEEecCCCcEEEEEeC----CCcE-----EEEeCCC-CceeEEecCCCCCCeeEEEEeecC--------------C
Q 039790 378 EITELSMCQWLTTRLASASL----DGTV-----KIWDDRK-STPLAVLRPYDGHPVNCVTFLIGP--------------H 433 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~----Dg~I-----rIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~--------------~ 433 (1395)
....++|+|+| .+|++.+. ++.+ ++|+-.. .+++..+.+... ++..+.|+|-. -
T Consensus 232 FFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~l 309 (434)
T KOG1009|consen 232 FFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVL 309 (434)
T ss_pred hhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEecccccccccccc
Confidence 35678999998 68877642 2322 3443221 244455555444 55666665110 0
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe-ccCcccccccccccceEEEEeCCCCEEEEEeCCCeE
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE-LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAI 512 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I 512 (1395)
|.+-.++.+ ....|.|||..+. ..+.... .|-..++ -++|+.||..|+..+.||..
T Consensus 310 pyrlvfaiA--t~~svyvydtq~~------------~P~~~v~nihy~~iT---------Diaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 310 PYRLVFAIA--TKNSVYVYDTQTL------------EPLAVVDNIHYSAIT---------DIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred ccceEEEEe--ecceEEEeccccc------------cceEEEeeeeeeeec---------ceeecCCCcEEEEeccCCce
Confidence 334444554 3678999998775 3333322 2333333 38999999999999999988
Q ss_pred EEEEcCCC
Q 039790 513 YAIHMDYG 520 (1395)
Q Consensus 513 ~iWdl~~g 520 (1395)
-+.-++..
T Consensus 367 S~vtfe~~ 374 (434)
T KOG1009|consen 367 SLVTFEPW 374 (434)
T ss_pred EEEEEcch
Confidence 77777653
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.63 E-value=1e-14 Score=169.89 Aligned_cols=269 Identities=14% Similarity=0.178 Sum_probs=192.8
Q ss_pred cCCCCCee--eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe
Q 039790 176 KVPKGRHL--IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL 253 (1395)
Q Consensus 176 ~sp~Gr~L--~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l 253 (1395)
+.|||..| +.+++++.++.. ++..+.++++|.+.|+|++|+.||+++|+|+.|..|.||+-.-.-...
T Consensus 20 fkPDGsqL~lAAg~rlliyD~n---------dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk- 89 (1081)
T KOG1538|consen 20 FKPDGTQLILAAGSRLLVYDTS---------DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK- 89 (1081)
T ss_pred ECCCCceEEEecCCEEEEEeCC---------CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-
Confidence 66888877 556777777765 346678899999999999999999999999999999999876432222
Q ss_pred ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE
Q 039790 254 RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA 333 (1395)
Q Consensus 254 ~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g 333 (1395)
..|++.|.||.| .|-.+.|+||+-. ..-+|........ .......+.++.|..+|.+++.+-
T Consensus 90 YSH~D~IQCMsF-NP~~h~LasCsLs-dFglWS~~qK~V~----------------K~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 90 YSHNDAIQCMSF-NPITHQLASCSLS-DFGLWSPEQKSVS----------------KHKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred eccCCeeeEeec-CchHHHhhhcchh-hccccChhhhhHH----------------hhhhheeEEEeeecCCCcEEEEec
Confidence 359999999999 7888899999875 5778887654310 011233456789999997555544
Q ss_pred eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC----cEEEEEeCCCcEEEEeCCCC
Q 039790 334 IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT----TRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 334 ~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~----~~LaSgs~Dg~IrIWDl~sg 409 (1395)
.+|+ +.+.... +.. ...+..-+|....|++++|+|..+ ..++...+..++.+|.+. |
T Consensus 152 ~nGT-IsiRNk~-gEe----------------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G 212 (1081)
T KOG1538|consen 152 FNGT-ISIRNKN-GEE----------------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-G 212 (1081)
T ss_pred cCce-EEeecCC-CCc----------------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-c
Confidence 4444 4444322 111 001344456788999999998742 378888888888888764 4
Q ss_pred ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccc
Q 039790 410 TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAF 489 (1395)
Q Consensus 410 ~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~ 489 (1395)
+.+..-+.-. ....|+.|. ++|.+++.+| .|+.+++|-- .| ..+.++-. .+.
T Consensus 213 ~~Igk~r~L~-FdP~CisYf----~NGEy~LiGG-sdk~L~~fTR-~G------------vrLGTvg~---------~D~ 264 (1081)
T KOG1538|consen 213 KQIGKDRALN-FDPCCISYF----TNGEYILLGG-SDKQLSLFTR-DG------------VRLGTVGE---------QDS 264 (1081)
T ss_pred eeecccccCC-CCchhheec----cCCcEEEEcc-CCCceEEEee-cC------------eEEeeccc---------cce
Confidence 4443222221 246788888 9999999988 8999999953 23 44444432 344
Q ss_pred cceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 490 FNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 490 ~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|.+.+...|++..++.|+.||+|--|++-.
T Consensus 265 WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 265 WIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 556789999999999999999999998865
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.62 E-value=8.5e-16 Score=183.25 Aligned_cols=268 Identities=15% Similarity=0.222 Sum_probs=194.1
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.+-++++.+|...|+|+.|...|.||++|+.|..|+||..+++ ++..++||.+.|++++. +.+..++++++.|..|++
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlav-s~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAV-SSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhcc-chhhhhhhhcccCceEEE
Confidence 3567788999999999999999999999999999999999987 68899999999999999 788889999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc------ccccCCCCC
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG------ERFSAEEPL 358 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~------~~~s~~~~~ 358 (1395)
|.+.++. .+.++.+|.+.|+.++|+|-. +..+++.+++|+.+.... ..|... .+
T Consensus 259 Wrl~~~~--------------pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~-~~ 318 (1113)
T KOG0644|consen 259 WRLPDGA--------------PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEK-DL 318 (1113)
T ss_pred EecCCCc--------------hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccc-cc
Confidence 9999987 566778899999999999965 344444555554442110 011111 11
Q ss_pred cc-----Ccccc-ccc----------eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCC
Q 039790 359 KC-----PVDEL-ING----------VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHP 422 (1395)
Q Consensus 359 ~~-----~~~~~-~~~----------~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~ 422 (1395)
.| ..|.. ..+ .-.+..|...+.-+.++.|-..+.+++-.+-.+++|++.+|..++.+.+|.. .
T Consensus 319 ~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~ 397 (1113)
T KOG0644|consen 319 VDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-E 397 (1113)
T ss_pred eeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-c
Confidence 11 00000 000 0011122222333333333324566666778899999999999999999987 9
Q ss_pred eeEEEEeecCCCCCcEE-EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe-ccCcccccccccccceEEEEeCCC
Q 039790 423 VNCVTFLIGPHPQHIVL-ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE-LKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 423 V~sV~fs~~~~pdg~~L-~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~-~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
++.+.|. |-+..+ .++| .||...|||+..| ..++.+. +|...+ ...||.||
T Consensus 398 ~yvLd~H----pfn~ri~msag-~dgst~iwdi~eg------------~pik~y~~gh~kl~----------d~kFSqdg 450 (1113)
T KOG0644|consen 398 VYVLDVH----PFNPRIAMSAG-YDGSTIIWDIWEG------------IPIKHYFIGHGKLV----------DGKFSQDG 450 (1113)
T ss_pred eeeeeec----CCCcHhhhhcc-CCCceEeeecccC------------Ccceeeecccceee----------ccccCCCC
Confidence 9999997 766554 4555 9999999999887 5555544 333221 27899999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCC
Q 039790 501 LFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 501 ~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
..++....-|.+||.....++.
T Consensus 451 ts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ceEecCCCCCceEEeccCCCcc
Confidence 9999999999999987765544
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.62 E-value=3.5e-14 Score=152.53 Aligned_cols=266 Identities=16% Similarity=0.181 Sum_probs=185.5
Q ss_pred eeeeCCCCCEEEEEEec-CCCEEEEEEcC-------CeEEEEECCCC----------ceEEec-cCCCCeEEEEEeeCCC
Q 039790 210 TKYISDPGLVLGRQIAV-NRNYICYGLKL-------GNIRILNIITA----------LRSLLR-GHTQRVTDMAFFAEDV 270 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Sp-dg~~LasGs~D-------G~IrIWd~~~~----------~~~~l~-~H~~~V~slaf~s~dg 270 (1395)
..|..|.+.|+.++-+| |.++|+++..+ ..+.||.+... ++..|. .+-+.|.||.| .|++
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew-~Pns 135 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW-EPNS 135 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE-cCCC
Confidence 35667888999998888 55667776542 34779998653 222333 46679999999 7899
Q ss_pred CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCcc
Q 039790 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKG 349 (1395)
Q Consensus 271 ~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~ 349 (1395)
..|++-. |..|.+|++..+..+.. .........+....++-.|+| +....+++..++.+..||.+.....
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~va--------ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVA--------EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchhe--------eecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence 9988876 78999999998763110 001111122344566788999 4557788888888888888754332
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEE
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTF 428 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~f 428 (1395)
..+-..|...|.++.|+|+-..+||+|+.||.|||||.|.- .+++++.+|.- +|++|.|
T Consensus 207 -------------------~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-WvW~VRf 266 (370)
T KOG1007|consen 207 -------------------NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-WVWAVRF 266 (370)
T ss_pred -------------------cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce-EEEEEEe
Confidence 23345688999999999998779999999999999999974 78999999986 9999999
Q ss_pred eecCCCCCcEEEEEecCCCeEEEEECCCCC--CCCCCC-------C--c------ccccEEEEEeccCcccccccccccc
Q 039790 429 LIGPHPQHIVLITGGPLNRELKIWASAEEE--GWLLPS-------D--I------ESWKCTQTLELKSSAELRLEDAFFN 491 (1395)
Q Consensus 429 s~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~--~~~~~~-------~--~------~~~~~l~tl~~h~~~i~~~~~~~~~ 491 (1395)
. |....|+-+|+.|..|.+|....-. ..+... + . -....+.+|..|.+.+++
T Consensus 267 n----~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~------- 335 (370)
T KOG1007|consen 267 N----PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA------- 335 (370)
T ss_pred c----CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE-------
Confidence 8 6554444445599999999875431 111000 0 0 112334567777766554
Q ss_pred eEEEEeC-CCCEEEEEeCCCeEEEEEcC
Q 039790 492 QVVALNR-AGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 492 ~~l~~S~-dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
++||. |.-++++-+.||.+.|=.+.
T Consensus 336 --~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 336 --LAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred --EeeccCCCeeEEEeccCceEEeecCC
Confidence 66655 55566778899999886654
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5e-14 Score=155.65 Aligned_cols=260 Identities=11% Similarity=0.085 Sum_probs=182.1
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC------ceEEec--cCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA------LRSLLR--GHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~------~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
.+.+.+|.+.|.++.|+.++++||+|+.|..++||+++.. +-..+. .|...|+|++| .....+|.+|+.+|
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F-~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF-DLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE-ccCCeeEecCCCcc
Confidence 3466789999999999999999999999999999998753 112233 35578999999 66678999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
+|...|+.+.+ .+.++.+ ..+.|+.+..+|..+.++++..++.+.+||.+......
T Consensus 128 ~VI~HDiEt~q--------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~-------- 185 (609)
T KOG4227|consen 128 TVIKHDIETKQ--------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI-------- 185 (609)
T ss_pred eeEeeecccce--------------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC--------
Confidence 99999999876 4444433 34578899999998777777777777777765432110
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCC-----CCeeEEEEeecC
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDG-----HPVNCVTFLIGP 432 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~-----~~V~sV~fs~~~ 432 (1395)
....+.......+++.|+|..+.+|++.+..+-+-+||++.. .++....+..+ ..-.++.|+
T Consensus 186 ---------~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~--- 253 (609)
T KOG4227|consen 186 ---------SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS--- 253 (609)
T ss_pred ---------ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC---
Confidence 023344456678899999999899999999999999999864 33333322221 123678899
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc-cccccccccceEEEEeCCCCEEEEEeCCCe
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA-ELRLEDAFFNQVVALNRAGLFLLANAKKNA 511 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~-i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~ 511 (1395)
|.|..|++.- .-..-.+||+-+. +|. .|+..... .++ ..+. ...++|-.| .-+++|+.+-.
T Consensus 254 -~~G~Q~msiR-R~~~P~~~D~~S~------------R~~-V~k~D~N~~GY~-N~~T-~KS~~F~~D-~~v~tGSD~~~ 315 (609)
T KOG4227|consen 254 -PSGNQFMSIR-RGKCPLYFDFISQ------------RCF-VLKSDHNPNGYC-NIKT-IKSMTFIDD-YTVATGSDHWG 315 (609)
T ss_pred -CCCCeehhhh-ccCCCEEeeeecc------------cce-eEeccCCCCcce-eeee-eeeeeeecc-eeeeccCcccc
Confidence 9998888754 4445567888764 332 22222111 111 1111 124666444 44899999999
Q ss_pred EEEEEcCCCC
Q 039790 512 IYAIHMDYGP 521 (1395)
Q Consensus 512 I~iWdl~~g~ 521 (1395)
|++|.+....
T Consensus 316 i~~WklP~~~ 325 (609)
T KOG4227|consen 316 IHIWKLPRAN 325 (609)
T ss_pred eEEEecCCCc
Confidence 9999997644
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.3e-14 Score=156.34 Aligned_cols=191 Identities=19% Similarity=0.313 Sum_probs=136.4
Q ss_pred CEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 229 NYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
..+|++..+|.|++||..++ .+..|++|...++.+.|.+. ..+.+.+|+.||+|++||++...... .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-----------~ 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-----------R 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-----------h
Confidence 67999999999999999997 47789999999999999544 56789999999999999999865211 1
Q ss_pred EEEecCCCCCccEEEEeCC-CCeEEEEEe-----CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 307 IQILADGDSVHPRVCWHPH-KQEILMLAI-----GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~-~~~lla~g~-----~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
+.+....... -++|..+ ...++++|. +-.++.||.+...+. + ......|.+.|+
T Consensus 110 ~~~~~~~~~~--f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--------l----------~~~~eSH~DDVT 169 (376)
T KOG1188|consen 110 ISWTQQSGTP--FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--------L----------RQLNESHNDDVT 169 (376)
T ss_pred eeccCCCCCc--ceEeeccCcCCeEEeccccccCceEEEEEEeccccch--------h----------hhhhhhccCcce
Confidence 1111111122 3444443 335666664 233555554432221 0 234567999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceeEEecCCCCCCeeEEEEeecCCCCC-cEEEEEecCCCeEEEEECC
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRKS----TPLAVLRPYDGHPVNCVTFLIGPHPQH-IVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~sg----~~l~tl~~h~~~~V~sV~fs~~~~pdg-~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
++.|+|.++++|+|||.||.|.|||+..- .++.++. |.. .|.++.|. .++ +.|.+- +...+..+|++.
T Consensus 170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~s-SI~~igw~----~~~ykrI~cl-TH~Etf~~~ele 242 (376)
T KOG1188|consen 170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGS-SIHLIGWL----SKKYKRIMCL-THMETFAIYELE 242 (376)
T ss_pred eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccc-eeeeeeee----cCCcceEEEE-EccCceeEEEcc
Confidence 99999999999999999999999998754 2344443 544 79999998 555 223333 378999999998
Q ss_pred CC
Q 039790 456 EE 457 (1395)
Q Consensus 456 tg 457 (1395)
.+
T Consensus 243 ~~ 244 (376)
T KOG1188|consen 243 DG 244 (376)
T ss_pred CC
Confidence 87
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.59 E-value=7.8e-14 Score=155.43 Aligned_cols=205 Identities=17% Similarity=0.195 Sum_probs=161.0
Q ss_pred eeeCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 211 KYISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
.+.||.+.|..++|+| +...||+|+.|.+|.||.+-.+ .+..|.||..+|.-|+||+.-.+.|+|+|.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 5679999999999999 6678999999999999998764 366899999999999998888899999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|.|||+.+|. .+..+. |.+.|++++|+.+|..++.++.+++|.+||.+...-
T Consensus 156 v~iWnv~tge--------------ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~------------- 207 (472)
T KOG0303|consen 156 VSIWNVGTGE--------------ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV------------- 207 (472)
T ss_pred EEEEeccCCc--------------eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-------------
Confidence 9999999998 222233 889999999999999999999999999888755321
Q ss_pred ccccccceEEEcccCC-CeEEEEEecCCCcEEEEEe---CCCcEEEEeCCCC---ceeEEecCCCCCCeeEEEEeecCCC
Q 039790 362 VDELINGVQLVGKHDG-EITELSMCQWLTTRLASAS---LDGTVKIWDDRKS---TPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~-~V~slafspdg~~~LaSgs---~Dg~IrIWDl~sg---~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
+..-.+|.+ .-..+.|-.+| .++.||- .+..+-+||-..- -.+.++.... .|.---|. +
T Consensus 208 -------v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD----~ 273 (472)
T KOG0303|consen 208 -------VSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYD----P 273 (472)
T ss_pred -------eeecccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeec----C
Confidence 222234655 23455666676 5444443 3678999986553 3455665554 47666776 8
Q ss_pred CCcEEEEEecCCCeEEEEECCCC
Q 039790 435 QHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|...+..+|..|+.||.|.+...
T Consensus 274 dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 274 DTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CCCEEEEEecCCcceEEEEecCC
Confidence 88899999999999999999876
No 175
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.58 E-value=4.3e-14 Score=158.48 Aligned_cols=174 Identities=22% Similarity=0.245 Sum_probs=138.2
Q ss_pred CCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCC----------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 216 PGLVLGRQIAVNRN-YICYGLKLGNIRILNIITA----------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 216 ~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~----------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
...|..+.|..+.. .||+|+.|..||||.+..+ -...|..|...|+++.| +++|++|+||+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf-~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF-SPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE-cCCcCeeeecCCCceEEE
Confidence 46788999998776 9999999999999988763 13467889999999999 999999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|....-.. . ..+. .... ... . |
T Consensus 92 Wk~~~~~~---~---------------~~d~---e~~~------------~ke-------------------~-----w- 113 (434)
T KOG1009|consen 92 WKQGDVRI---F---------------DADT---EADL------------NKE-------------------K-----W- 113 (434)
T ss_pred EEecCcCC---c---------------cccc---hhhh------------Ccc-------------------c-----e-
Confidence 98774210 0 0000 0000 000 0 0
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
.-.+.+.+|...|++++|++++ .++++++.|..+++||+..|..+..+..|+. .|..++|. |-++++++-+
T Consensus 114 --~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawD----pl~qyv~s~s- 184 (434)
T KOG1009|consen 114 --VVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGVAWD----PLNQYVASKS- 184 (434)
T ss_pred --EEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeecccccc-ccceeecc----hhhhhhhhhc-
Confidence 0035567899999999999999 8999999999999999999999999999997 99999998 9999999876
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.|...+++++...
T Consensus 185 ~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 185 SDRHPEGFSAKLK 197 (434)
T ss_pred cCcccceeeeeee
Confidence 7887777776543
No 176
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.4e-14 Score=166.24 Aligned_cols=259 Identities=13% Similarity=0.119 Sum_probs=186.5
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---------ceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---------LRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
..++..|.+.|..++|.+....|++|+.||+|.+|++... .+.+|++|.++|.|+++ +.++..+++||.|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v-~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV-PSNGEHCYSGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe-cCCceEEEeeccC
Confidence 3477789999999999999999999999999999999331 57899999999999999 9999999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|+|+.|++..... .+. .-........+.+|.+.++.+++|.....++.+..++++..|.......
T Consensus 366 g~I~~w~~p~n~d--p~d--s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----------- 430 (577)
T KOG0642|consen 366 GTIRCWNLPPNQD--PDD--SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----------- 430 (577)
T ss_pred ceeeeeccCCCCC--ccc--ccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-----------
Confidence 9999998773221 110 0011112345567888899999999999888888888888887754322
Q ss_pred cCccccccceEEEcc--cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC------CCCeeEEEEeec
Q 039790 360 CPVDELINGVQLVGK--HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD------GHPVNCVTFLIG 431 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~--h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~------~~~V~sV~fs~~ 431 (1395)
.+|.. -.+.-.+|+|-.......++...-+.--++|...+..+..+..-. ...+..|.+.
T Consensus 431 ----------~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~-- 498 (577)
T KOG0642|consen 431 ----------CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH-- 498 (577)
T ss_pred ----------cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec--
Confidence 11111 122334555543321222222223333344444454444443211 0146777776
Q ss_pred CCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCe
Q 039790 432 PHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNA 511 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~ 511 (1395)
|.+.+.+++. .|+.|+++|..++ ..+.....|...+. ++++.++|-+|++++.|+.
T Consensus 499 --~~~~~~~~~h-ed~~Ir~~dn~~~------------~~l~s~~a~~~svt---------slai~~ng~~l~s~s~d~s 554 (577)
T KOG0642|consen 499 --PTADITFTAH-EDRSIRFFDNKTG------------KILHSMVAHKDSVT---------SLAIDPNGPYLMSGSHDGS 554 (577)
T ss_pred --CCCCeeEecc-cCCceeccccccc------------ccchheeeccceec---------ceeecCCCceEEeecCCce
Confidence 8999999877 9999999999998 88887777776654 4999999999999999999
Q ss_pred EEEEEcCC
Q 039790 512 IYAIHMDY 519 (1395)
Q Consensus 512 I~iWdl~~ 519 (1395)
|++|.+..
T Consensus 555 v~l~kld~ 562 (577)
T KOG0642|consen 555 VRLWKLDV 562 (577)
T ss_pred eehhhccc
Confidence 99999864
No 177
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.57 E-value=5.3e-14 Score=163.20 Aligned_cols=258 Identities=18% Similarity=0.212 Sum_probs=183.3
Q ss_pred EecCCCEEEEE--EcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 224 IAVNRNYICYG--LKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 224 ~Spdg~~LasG--s~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
|..+..++|+- +..|.|-||+++.. .+-.+. ....|+++.|.+-|...|+.++.||.|++|.+..+...+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 44566666653 44689999999863 122222 3357999999878899999999999999999988763221
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
....-..+..|...|+.+.|||-...++++++.+..+.+|+...+.. ...+.+|
T Consensus 666 -------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-------------------~~~l~gH 719 (1012)
T KOG1445|consen 666 -------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-------------------YSRLVGH 719 (1012)
T ss_pred -------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-------------------hheeccC
Confidence 11223455667888999999998888888877776666666554332 4567789
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC----CeEE
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN----RELK 450 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D----g~I~ 450 (1395)
.+.|.+++||||| +++|+.+.||+|++|+-+++ ++++.-++..+..--.|.|. -||+++++.| .| +.|.
T Consensus 720 tdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wa----cdgr~viv~G-fdk~SeRQv~ 793 (1012)
T KOG1445|consen 720 TDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWA----CDGRIVIVVG-FDKSSERQVQ 793 (1012)
T ss_pred cCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEE----ecCcEEEEec-ccccchhhhh
Confidence 9999999999999 89999999999999999987 56666655544456778888 8999999988 55 5688
Q ss_pred EEECCCCCCCCCCCCcccccEEEE--EeccCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCCCCCcc
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQT--LELKSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHMDYGPNPASTR 527 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~t--l~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~~g~~~~~~~ 527 (1395)
+||..+-. ...+.+ ++...... +-.+..| +.++++|-.|..|++|.+-+. ..+
T Consensus 794 ~Y~Aq~l~----------~~pl~t~~lDvaps~L----------vP~YD~Ds~~lfltGKGD~~v~~yEv~~e----sPy 849 (1012)
T KOG1445|consen 794 MYDAQTLD----------LRPLYTQVLDVAPSPL----------VPHYDYDSNVLFLTGKGDRFVNMYEVIYE----SPY 849 (1012)
T ss_pred hhhhhhcc----------CCcceeeeecccCccc----------cccccCCCceEEEecCCCceEEEEEecCC----Cce
Confidence 99876541 122333 22222211 1123344 457788889999999998773 446
Q ss_pred eeeeeeeeccc
Q 039790 528 MDYIAEFTVTM 538 (1395)
Q Consensus 528 ~~~i~~f~~~~ 538 (1395)
+..+..|....
T Consensus 850 ~lpl~~f~sp~ 860 (1012)
T KOG1445|consen 850 LLPLAPFMSPV 860 (1012)
T ss_pred eeecccccCCC
Confidence 66666666543
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=8.9e-13 Score=164.02 Aligned_cols=277 Identities=16% Similarity=0.182 Sum_probs=182.1
Q ss_pred ccccceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEE
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLA 274 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~La 274 (1395)
.++..+..+..|...|..++.+.. +.++++|+.||+|+|||...- ...++.-...++.++.+ ..+++.+|
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~-~~~~~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM-CGNGDQFA 1114 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe-ccCCCeEE
Confidence 456778888889999988887764 599999999999999998651 22334435678888888 77899999
Q ss_pred EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC-CCCc-cEEEEeCCCC--eEEEEEeCCeEEEEEcCCCCccc
Q 039790 275 SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG-DSVH-PRVCWHPHKQ--EILMLAIGNRILKIDSNRVGKGE 350 (1395)
Q Consensus 275 Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~-~~~v-~~v~~sp~~~--~lla~g~~~~ii~~d~~~~~~~~ 350 (1395)
.++.||.|++.++.-..... ....+......+ .+.+ ..-+|..... .++.+...+.++.||.+....
T Consensus 1115 v~t~DG~v~~~~id~~~~~~-------~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-- 1185 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSK-------RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-- 1185 (1431)
T ss_pred EEcCCCeEEEEEcccccccc-------ceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh--
Confidence 99999999999998632100 011112222221 2222 2223333222 344455566677776654321
Q ss_pred cccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEee
Q 039790 351 RFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLI 430 (1395)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~ 430 (1395)
. |.. ...-..+.|++++.+|.+ +++++|+..|.+.+||+|-+.++..+......+|..|..++
T Consensus 1186 ~-----------w~l-----k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1186 A-----------WRL-----KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred H-----------Hhh-----hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 1 111 112245789999999998 89999999999999999999999888632223888888762
Q ss_pred cCCCCCcEEEEEec-CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc-cccc--c-------cccccceEEEEeCC
Q 039790 431 GPHPQHIVLITGGP-LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS-AELR--L-------EDAFFNQVVALNRA 499 (1395)
Q Consensus 431 ~~~pdg~~L~s~Gs-~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~-~i~~--~-------~~~~~~~~l~~S~d 499 (1395)
-. +...+.+++|+ ..+.|.+|++.+| .|..+|....+ .... . ....-...+.+...
T Consensus 1249 ~~-~~~S~~vs~~~~~~nevs~wn~~~g------------~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~ 1315 (1431)
T KOG1240|consen 1249 TY-PQESVSVSAGSSSNNEVSTWNMETG------------LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK 1315 (1431)
T ss_pred cC-CCCceEEEecccCCCceeeeecccC------------cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC
Confidence 21 33357777776 7899999999998 55555543311 0000 0 00011113445556
Q ss_pred CCEEEEEeCCCeEEEEEcCCC
Q 039790 500 GLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 500 g~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+.++.+|+.|..|+.||....
T Consensus 1316 ~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred CceeeecCCccceeeccCCCc
Confidence 678889999999999998764
No 179
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.54 E-value=5.1e-13 Score=146.02 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=157.8
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
-...|+|.+|+.|+..+|.+..+..|.||..... ..+++..|...|+.|+| .+..+.|++|+.|..-+||....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW-ap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW-APKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee-cCCCCceeEccCCCCccccccCCC
Confidence 3478999999999999999999999999998876 46789999999999999 899999999999999999999543
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
. .+...+.+ ..+....++|.|+|.++.| ++|++..++.++...... . |-.. .+
T Consensus 88 ~----------~WkptlvL-lRiNrAAt~V~WsP~enkF-AVgSgar~isVcy~E~EN--------d-----WWVs--Kh 140 (361)
T KOG1523|consen 88 G----------TWKPTLVL-LRINRAATCVKWSPKENKF-AVGSGARLISVCYYEQEN--------D-----WWVS--KH 140 (361)
T ss_pred C----------eeccceeE-EEeccceeeEeecCcCceE-EeccCccEEEEEEEeccc--------c-----eehh--hh
Confidence 3 13333333 3456778899999999754 555555555444322111 1 1000 12
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC------------------CCceeEEecCCCCCCeeEEEEeecC
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR------------------KSTPLAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~------------------sg~~l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
+.+.+...|++++|+|++ -+|+.|+.|+..|||... -|..+..+....+ +|..+.|+
T Consensus 141 ikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg-wvh~v~fs--- 215 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG-WVHGVLFS--- 215 (361)
T ss_pred hCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC-ceeeeEeC---
Confidence 233577889999999998 899999999999998632 1234445544444 99999999
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCC
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|+|..|+-.| .|++|.+-|....
T Consensus 216 -~sG~~lawv~-Hds~v~~~da~~p 238 (361)
T KOG1523|consen 216 -PSGNRLAWVG-HDSTVSFVDAAGP 238 (361)
T ss_pred -CCCCEeeEec-CCCceEEeecCCC
Confidence 9999999988 9999999998765
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=6.2e-14 Score=149.18 Aligned_cols=268 Identities=15% Similarity=0.132 Sum_probs=183.2
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.+...++.|.+.|+++.|-.+++ |.+|..-|.|++|++.+.. ...++ .|...|+.+.. -++ ..|.+-+.|+++.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~-~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQS-IPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceee-cCC-cchhhcCCCceEEE
Confidence 46677789999999999998886 8999999999999999873 55566 46778999887 454 67899999999999
Q ss_pred EECCCCCCCCCCcc------------c-ccceEE----------------------EEEEecC----CCCCccEEEEeC-
Q 039790 285 WNITEGPDEEDKPQ------------I-LGKIVV----------------------AIQILAD----GDSVHPRVCWHP- 324 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~------------~-~~~~i~----------------------~l~~~~~----~~~~v~~v~~sp- 324 (1395)
|++..+........ . ..+... .+.+..+ ..+.+.+..|.-
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 99987331110000 0 000000 0000000 112233333222
Q ss_pred CC-CeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 039790 325 HK-QEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVK 402 (1395)
Q Consensus 325 ~~-~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~Ir 402 (1395)
.+ ..++++|.. +.++.||.........|. .. | +-+.....|...|.++.|.+.. ..=++|+.+..+.
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--~~-----~---kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~ 230 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--QS-----S---KVESPNASHKQPVLSLDYASSC-DRGISGGADDKLV 230 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccc--cc-----c---ccccchhhccCcceeeeechhh-cCCcCCCccccce
Confidence 22 245555654 555666554422211110 00 1 1133445699999999998765 5667888888899
Q ss_pred EEeCCCC--ce----eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 403 IWDDRKS--TP----LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 403 IWDl~sg--~~----l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
.|.+... .+ ..+++ |. .|..+.+- ||++.++++| +|+.||||..++. +.+..++
T Consensus 231 ~~Sl~~s~gslq~~~e~~lk-np--Gv~gvrIR----pD~KIlATAG-WD~RiRVyswrtl------------~pLAVLk 290 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLK-NP--GVSGVRIR----PDGKILATAG-WDHRIRVYSWRTL------------NPLAVLK 290 (323)
T ss_pred eeeeccccCcccccceEEec-CC--CccceEEc----cCCcEEeecc-cCCcEEEEEeccC------------Cchhhhh
Confidence 9987643 22 11222 33 58999998 9999999999 9999999999998 8999999
Q ss_pred ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 477 ~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.|...+. .++|+++..+++++++|+.|-+|++
T Consensus 291 yHsagvn---------~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVN---------AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhccee---------EEEeCCCCchhhhccCCceEEeeec
Confidence 9997654 4999999999999999999999986
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.9e-13 Score=148.00 Aligned_cols=289 Identities=12% Similarity=0.136 Sum_probs=191.5
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CCCEEEEEEc
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NRNYICYGLK 236 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg~~LasGs~ 236 (1395)
..++++-..|.||++|.. .+..+..|+++...+..+.|.. ..+.+.+|+.
T Consensus 41 ~~vav~lSngsv~lyd~~----------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss 92 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG----------------------------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSS 92 (376)
T ss_pred eeEEEEecCCeEEEEecc----------------------------chhhhheecCCCCcccceEEecCCCCCeeEEecc
Confidence 567788888899998821 1234567788888899999987 5688999999
Q ss_pred CCeEEEEECCCC---ceEEeccCC-CCeEEEEEeeCCCCEEEEEEC----CCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 237 LGNIRILNIITA---LRSLLRGHT-QRVTDMAFFAEDVHLLASASV----DGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 237 DG~IrIWd~~~~---~~~~l~~H~-~~V~slaf~s~dg~~LaSgs~----DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
||+||+||++.. .+..+..|. .+-.+++. .-+++++++|.. |-.|.+||++..+- . .-.
T Consensus 93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~-nck~~ii~~GtE~~~s~A~v~lwDvR~~qq----------~--l~~ 159 (376)
T KOG1188|consen 93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDL-NCKKNIIACGTELTRSDASVVLWDVRSEQQ----------L--LRQ 159 (376)
T ss_pred CCeEEEEEeecchhhhheeccCCCCCcceEeec-cCcCCeEEeccccccCceEEEEEEeccccc----------h--hhh
Confidence 999999999985 245566666 34455555 335677777643 66799999998661 0 123
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
+...|...|++++|||.+..++++|+-++++-+.+.+... ..+.+.....|...|.++.|..++
T Consensus 160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~----------------EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN----------------EEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred hhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc----------------chhhHHHhhcccceeeeeeeecCC
Confidence 4567899999999999999988888866655544433221 111233344588899999999887
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-----CCeeEEEEeecCC--CCCcEEEEEecCCCeEEEEECCCCCCCC
Q 039790 389 TTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-----HPVNCVTFLIGPH--PQHIVLITGGPLNRELKIWASAEEEGWL 461 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-----~~V~sV~fs~~~~--pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~ 461 (1395)
-..|.+-+..++..+|++..+.+...+....- .....+.+.-+.| .++..++.+|..-+...++-+...
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~---- 299 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDT---- 299 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeec----
Confidence 55789999999999999998876655542210 0111222211111 345555555533555555544321
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
......+.+..+.+++..+ ++.+.|...+.++.+|+.||.+.+|..+
T Consensus 300 --~s~~~~~~~a~l~g~~~ei--------VR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 300 --SSGSLLTEPAILQGGHEEI--------VRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred --ccccccCccccccCCcHHH--------HHHHhhhcccceeeccCCCceEEEEecC
Confidence 0002234455566644332 2246677889999999999999999964
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.53 E-value=1.1e-11 Score=146.93 Aligned_cols=254 Identities=12% Similarity=0.089 Sum_probs=160.0
Q ss_pred CCEEEEEEecCCCEEEEEE-cCCeEEEEECCC-CceEEec--cCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGL-KLGNIRILNIIT-ALRSLLR--GHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNITEGP 291 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs-~DG~IrIWd~~~-~~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~ 291 (1395)
+....+.|+|++++|++++ .++.|.+|+++. +.+.... ...+....|+| ++++++|++++. ++.|.+|++.+..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~-~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST-DHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE-CCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4456789999999987764 478999999973 4332221 23345678999 889998887764 8899999997432
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
... . .+..... ......++++|++++++++..+ +.+.+|+....+... .. .....
T Consensus 114 ~~~-------~---~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~---~~----------~~~~~ 169 (330)
T PRK11028 114 IPV-------A---PIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV---AQ----------EPAEV 169 (330)
T ss_pred CCC-------C---ceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc---cc----------CCCce
Confidence 100 0 1111111 2234568899999999888776 666666654322110 00 00000
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeC-CCcEEEEeCCC--C--ceeEEecCCC----C-CCeeEEEEeecCCCCCcEEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASL-DGTVKIWDDRK--S--TPLAVLRPYD----G-HPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~-Dg~IrIWDl~s--g--~~l~tl~~h~----~-~~V~sV~fs~~~~pdg~~L~ 440 (1395)
.+. .......++|+|+| ++|+++.. +++|.+||+.. + +.+..+..+. + .+...+.|+ |+|++|+
T Consensus 170 ~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~----pdg~~ly 243 (330)
T PRK11028 170 TTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT----PDGRHLY 243 (330)
T ss_pred ecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC----CCCCEEE
Confidence 111 12346789999998 66666655 89999999973 3 3344443211 1 133468898 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
++...++.|.+|++.... ...+.+..+.... ....+.+++||++|+++. .+++|.+|+++.
T Consensus 244 v~~~~~~~I~v~~i~~~~--------~~~~~~~~~~~~~----------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 244 ACDRTASLISVFSVSEDG--------SVLSFEGHQPTET----------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EecCCCCeEEEEEEeCCC--------CeEEEeEEEeccc----------cCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 986568999999996541 1112233322211 112488999999888766 489999999864
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.52 E-value=2e-13 Score=158.49 Aligned_cols=229 Identities=21% Similarity=0.305 Sum_probs=172.2
Q ss_pred CeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 238 GNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 238 G~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|.+-|.-+... .+..+.+|.+.|+++.|++-+..+|++|+.|..|+||.+..|... ..-..-..+++
T Consensus 55 ~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q--------~LSape~~~g~ 126 (1012)
T KOG1445|consen 55 GKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQ--------KLSAPEIDVGG 126 (1012)
T ss_pred ceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccc--------ccCCcceeecC
Confidence 34555544432 355788999999999997777889999999999999999865411 11112234566
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
....+.++.|||....|++++..+.+++||...... ...+.+|.+.|.+..|+.|| .+|
T Consensus 127 ~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~--------------------~~el~~h~d~vQSa~WseDG-~ll 185 (1012)
T KOG1445|consen 127 GNVIVECLRFHPTADGILASGAHGSVYITDISTQKT--------------------AVELSGHTDKVQSADWSEDG-KLL 185 (1012)
T ss_pred CceEEEEeecccCcCceEEeccCceEEEEEcccCce--------------------eecccCCchhhhccccccCC-ceE
Confidence 677788999999999999999999999999865432 45567899999999999999 899
Q ss_pred EEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC----CeEEEEECCCCCCCCCCCCcc
Q 039790 393 ASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN----RELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D----g~I~IWDl~tg~~~~~~~~~~ 467 (1395)
++++.|+.|+|||-|. ++++++..+|.+..=..|.|. .+...|+++| .+ +.|++||.+.. .
T Consensus 186 atscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~----Gn~~rlisTG-F~~~R~reV~~~Dtr~f---------~ 251 (1012)
T KOG1445|consen 186 ATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWA----GNWERLISTG-FTTKRIREVRAYDTRKF---------G 251 (1012)
T ss_pred eeecCCcceEEeCCccCCCccccccccccchhheeeec----cchhhhhhcc-cchhhheeeeeeecccc---------C
Confidence 9999999999999986 589999999998777889997 5656888888 44 57999999875 2
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCE-EEEEeCCCeEEEEEcCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF-LLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~-LaSgs~Dg~I~iWdl~~ 519 (1395)
..+.++........ -.--|.+|.++ +++|-.++.|+.+.+..
T Consensus 252 --~p~~tleld~stGv--------LiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 252 --APVHTLELDSSTGV--------LIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred --CcceeEEeecccce--------EeeeecCCCceEEEecCCcceEEEEEecC
Confidence 34445544332210 12345677654 55666788888888765
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=9.3e-12 Score=152.00 Aligned_cols=307 Identities=16% Similarity=0.164 Sum_probs=209.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC--C---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--A---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~--~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
.|.-.++|++++|+++++|+|..||.|.||.-.. + ..+.+.-|...|.+++| +.+|.+|+|||..|.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f-S~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF-SSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE-ecCCceEeecccceEEEEEeec
Confidence 3556689999999999999999999999997544 2 46688899999999999 9999999999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+++ -+++..-...+..+.|+|++....++..|+.|+.+...........+.-.+ + .
T Consensus 282 T~~---------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~--~-~------ 337 (792)
T KOG1963|consen 282 TGK---------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP--P-T------ 337 (792)
T ss_pred CCC---------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC--C-C------
Confidence 987 234455567788899999999999999999999987754432111100000 0 0
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-----CCCCC-----CeeEEEEeecCCCCCcE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-----PYDGH-----PVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-----~h~~~-----~V~sV~fs~~~~pdg~~ 438 (1395)
-.......+-.+.++++|.- +.++-.+..|.|.+||+.+...+..+. .+.+. .+++++++ -.|.+
T Consensus 338 ~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~----~~gs~ 412 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARS----RFGSW 412 (792)
T ss_pred ccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhh----ccceE
Confidence 00011234556788899955 688888999999999998877666553 12221 57788887 67999
Q ss_pred EEEEe-------cCC--CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEeC
Q 039790 439 LITGG-------PLN--RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANAK 508 (1395)
Q Consensus 439 L~s~G-------s~D--g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~ 508 (1395)
++|.- ..| -.+|+|-.... ...|.+...+...++. .+...+.+++... ..++++.
T Consensus 413 maT~E~~~d~~~~~~~e~~LKFW~~n~~--------~kt~~L~T~I~~PH~~-------~~vat~~~~~~rs~~~vta~~ 477 (792)
T KOG1963|consen 413 MATLEARIDKFNFFDGEVSLKFWQYNPN--------SKTFILNTKINNPHGN-------AFVATIFLNPTRSVRCVTASV 477 (792)
T ss_pred EEEeeeeehhhhccCceEEEEEEEEcCC--------cceeEEEEEEecCCCc-------eeEEEEEecCcccceeEEecc
Confidence 98853 123 35788987654 3455555555544322 2222334444444 8899999
Q ss_pred CCeEEEEEcCCCCCCC----CcceeeeeeeeccccEEEEecCC--CCcCcCCCCeEEEEEcCCC
Q 039790 509 KNAIYAIHMDYGPNPA----STRMDYIAEFTVTMPILSLTGTT--TDASPDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 509 Dg~I~iWdl~~g~~~~----~~~~~~i~~f~~~~~ils~~~~~--~d~~~s~dg~V~lWdv~t~ 566 (1395)
||.++||-+...++.. .-+++.+..|. ..++.+..+.. .-...+.|++|.|||-.+.
T Consensus 478 dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~-k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 478 DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH-KTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred CCeEEEEEEecccccCcCccceEEeeeeccc-cCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 9999999996544322 12344555552 22333333222 0112467889999999984
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2e-12 Score=136.16 Aligned_cols=260 Identities=15% Similarity=0.117 Sum_probs=169.3
Q ss_pred CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeE
Q 039790 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRI 338 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~i 338 (1395)
.|.+-+| ++.+++|+.|..+|+|.+..+.+-..-..++ .++ ..+.....|+..++.++|+. .++.+|.++.+
T Consensus 12 tvf~qa~-sp~~~~l~agn~~G~iav~sl~sl~s~sa~~--~gk--~~iv~eqahdgpiy~~~f~d---~~Lls~gdG~V 83 (325)
T KOG0649|consen 12 TVFAQAI-SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEP--PGK--LKIVPEQAHDGPIYYLAFHD---DFLLSGGDGLV 83 (325)
T ss_pred HHHHHhh-CCcceEEEEecCCCeEEEEEehhhhccccCC--CCC--cceeeccccCCCeeeeeeeh---hheeeccCceE
Confidence 4666778 8889999999999999999987643211111 111 12334478899999999982 45666666777
Q ss_pred EEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC
Q 039790 339 LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY 418 (1395)
Q Consensus 339 i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h 418 (1395)
+-|.-....+.. -.-++|....+.+.-.-.--.|+++-..|.. +-++.++.|+.++-||+++|+..++++||
T Consensus 84 ~gw~W~E~~es~-------~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 84 YGWEWNEEEESL-------ATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred EEeeehhhhhhc-------cchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcCC
Confidence 776433222110 0013344444433311122368999999887 55666668999999999999999999999
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc-ccccccceEEEEe
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR-LEDAFFNQVVALN 497 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~-~~~~~~~~~l~~S 497 (1395)
.+ .|.+|.-- .....+++++ .||++||||++++ +|++.+..-...... ++.+-+ ..++.
T Consensus 156 tD-YvH~vv~R----~~~~qilsG~-EDGtvRvWd~kt~------------k~v~~ie~yk~~~~lRp~~g~w--igala 215 (325)
T KOG0649|consen 156 TD-YVHSVVGR----NANGQILSGA-EDGTVRVWDTKTQ------------KHVSMIEPYKNPNLLRPDWGKW--IGALA 215 (325)
T ss_pred cc-eeeeeeec----ccCcceeecC-CCccEEEEecccc------------ceeEEeccccChhhcCcccCce--eEEEe
Confidence 98 99999984 3444567755 9999999999999 999888754433221 222222 46666
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC-cCC-CCeEEEEEcC
Q 039790 498 RAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS-PDG-EHIVQIYCVQ 564 (1395)
Q Consensus 498 ~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~-~s~-dg~V~lWdv~ 564 (1395)
-+..+|++|+. -.+.+|++...+ ..+-|....++-..++.. |.+ ..| .+.|.-|.+.
T Consensus 216 ~~edWlvCGgG-p~lslwhLrsse--------~t~vfpipa~v~~v~F~~-d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 216 VNEDWLVCGGG-PKLSLWHLRSSE--------STCVFPIPARVHLVDFVD-DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ccCceEEecCC-CceeEEeccCCC--------ceEEEecccceeEeeeec-ceEEEeccccceeeeeec
Confidence 77889988774 458999998743 233344333443444443 222 234 3467777653
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.50 E-value=9.3e-13 Score=153.78 Aligned_cols=275 Identities=13% Similarity=0.149 Sum_probs=185.5
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
.|..++|.|||..|+.+.. ..+.|||.+.| .+.++++|.+.|++++| +.||.+|+||+.|..|.||.-.-..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAy-s~dGkrFASG~aDK~VI~W~~klEG----- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAY-AKDGKRFASGSADKSVIIWTSKLEG----- 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEE-ccCCceeccCCCceeEEEecccccc-----
Confidence 7889999999998888765 47899999987 68899999999999999 9999999999999999999866422
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
.+...|.+.+.|+.|+|-...+++++-.+ .-.|.. + ..-.......
T Consensus 87 -----------~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~-----------~-----------qK~V~K~kss 132 (1081)
T KOG1538|consen 87 -----------ILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSP-----------E-----------QKSVSKHKSS 132 (1081)
T ss_pred -----------eeeeccCCeeeEeecCchHHHhhhcchhh-ccccCh-----------h-----------hhhHHhhhhh
Confidence 12335678888999999886655554332 222211 1 1000111133
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec--CCCCCCeeEEEEeecCCCC-CcEEEEEecCCCeEEEEE
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR--PYDGHPVNCVTFLIGPHPQ-HIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~--~h~~~~V~sV~fs~~~~pd-g~~L~s~Gs~Dg~I~IWD 453 (1395)
..|.+++|..|| .+|+.|-.||+|.|-+ .+|+....+. |..+.+|++++|+|+..+. ...+++.. ++.++.+|.
T Consensus 133 ~R~~~CsWtnDG-qylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy~ 209 (1081)
T KOG1538|consen 133 SRIICCSWTNDG-QYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFYQ 209 (1081)
T ss_pred eeEEEeeecCCC-cEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEEE
Confidence 568899999999 8999999999999986 4454444443 2223499999999554332 23455544 888888887
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeee
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAE 533 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~ 533 (1395)
+... .+. ... ...|-..++.+-++|.+++.|+.|+.+.+|--+. .++-.+.+
T Consensus 210 LsG~-------------~Ig----k~r-----~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G------vrLGTvg~ 261 (1081)
T KOG1538|consen 210 LSGK-------------QIG----KDR-----ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG------VRLGTVGE 261 (1081)
T ss_pred ecce-------------eec----ccc-----cCCCCchhheeccCCcEEEEccCCCceEEEeecC------eEEeeccc
Confidence 7542 111 110 1112223577779999999999999999986432 23334444
Q ss_pred eeccccEEEEecCCCCcC----cCCCCeEEEEEcCCCc
Q 039790 534 FTVTMPILSLTGTTTDAS----PDGEHIVQIYCVQTQA 567 (1395)
Q Consensus 534 f~~~~~ils~~~~~~d~~----~s~dg~V~lWdv~t~~ 567 (1395)
+ ...+++....+ ++. +.-||+|-.|++-...
T Consensus 262 ~--D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 262 Q--DSWIWTVQAKP-NSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred c--ceeEEEEEEcc-CCceEEEEEccCeeehhhhHHhH
Confidence 2 24555555444 322 2457788888765543
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=3.1e-12 Score=156.78 Aligned_cols=299 Identities=15% Similarity=0.182 Sum_probs=185.9
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccC---CCCeEEEEEee-CCCCEEEEEECCCcEEEEECCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGH---TQRVTDMAFFA-EDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H---~~~V~slaf~s-~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
.-..+.|++-...|+++...-.|+|||.+.+. +..|..+ ...|++|.+-. .|..++++|+.||.||||+--....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 34557788888899999877899999999874 3344333 35799999843 4566899999999999998543220
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
. + .+. .-+|.+-.+ .+
T Consensus 1146 ~--~----~eL---------------VTaw~~Ls~-------------------------------------------~~ 1161 (1387)
T KOG1517|consen 1146 K--K----PEL---------------VTAWSSLSD-------------------------------------------QL 1161 (1387)
T ss_pred C--C----cee---------------EEeeccccc-------------------------------------------cC
Confidence 0 0 000 011111100 00
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+..+.-.-+.|....+ +|++++.-..|||||...-.+++.+....+..|+++.-+ ...|..+++ |..||.|++|
T Consensus 1162 ~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~---~~~gn~i~A-GfaDGsvRvy 1236 (1387)
T KOG1517|consen 1162 PGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD---LVHGNIIAA-GFADGSVRVY 1236 (1387)
T ss_pred ccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeeccc---ccCCceEEE-eecCCceEEe
Confidence 11112224466777664 455555578999999998888887765554477877665 134666666 5599999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCE-EEEEeCCCeEEEEEcCCCCCCCCcceeee
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF-LLANAKKNAIYAIHMDYGPNPASTRMDYI 531 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~-LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i 531 (1395)
|.+.. .....+..++.|..... + -.+.+.+.|.- |++|+.||.|++||++....+....+.+-
T Consensus 1237 D~R~a---------~~ds~v~~~R~h~~~~~------I-v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1237 DRRMA---------PPDSLVCVYREHNDVEP------I-VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred ecccC---------CccccceeecccCCccc------c-eeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 99876 22245667777776521 1 13677777765 99999999999999987532222222222
Q ss_pred eeeeccccEEEEecCCC-CcCcCCC-CeEEEEEcCCCce--eee-------cccceEEecCCCCC--eecccCCCceEEE
Q 039790 532 AEFTVTMPILSLTGTTT-DASPDGE-HIVQIYCVQTQAI--QQY-------ALDLSQCLPPPLEN--AELEKTDSNATRA 598 (1395)
Q Consensus 532 ~~f~~~~~ils~~~~~~-d~~~s~d-g~V~lWdv~t~~i--~~~-------~~~~~~cl~~s~d~--l~~~~sd~~v~~i 598 (1395)
.+|... ...++.... +.+++|. +.|+||++....+ ..+ .+....|+.|.+.. ++++ +++.++.+
T Consensus 1301 ~~yGs~--lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG-~~Ds~V~i 1377 (1387)
T KOG1517|consen 1301 WEYGSA--LTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG-SADSTVSI 1377 (1387)
T ss_pred cccCcc--ceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhc-cCCceEEE
Confidence 333322 222232221 2233333 8899999987543 222 23335799999987 5555 45577767
Q ss_pred eecCCC
Q 039790 599 FDVANP 604 (1395)
Q Consensus 599 WD~~tg 604 (1395)
|-...+
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 755433
No 188
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3.8e-13 Score=153.63 Aligned_cols=313 Identities=14% Similarity=0.162 Sum_probs=208.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFAED-VHLLASASVDGRFF 283 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~ 283 (1395)
....+|..|.+.|..|.|...|..|++|+.|..|.+||+..+. +....||...|.--.|.+.. ...|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4456788999999999999999999999999999999998873 44556899999988885433 35699999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
+=.+.... .+........|.+.+..++..|+..+-|.++. ++.+..+|.+.......+
T Consensus 213 ~s~i~~t~-----------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~---------- 271 (559)
T KOG1334|consen 213 VSEILETG-----------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF---------- 271 (559)
T ss_pred eeeecccc-----------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee----------
Confidence 98876543 12223456678888999999998886555554 555556665443221111
Q ss_pred cccccceEEEcccCC---CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc------eeEEecCCC-----CCCeeEEEE
Q 039790 363 DELINGVQLVGKHDG---EITELSMCQWLTTRLASASLDGTVKIWDDRKST------PLAVLRPYD-----GHPVNCVTF 428 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~---~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~------~l~tl~~h~-----~~~V~sV~f 428 (1395)
.....+.. ..++++..|...+.|++|+.|-.+++||.+.-. .+..|-.|. .-.|++++|
T Consensus 272 -------~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y 344 (559)
T KOG1334|consen 272 -------VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY 344 (559)
T ss_pred -------eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe
Confidence 11222333 567899999887899999999999999987531 233333221 126999999
Q ss_pred eecCCCCCcEEEEEecCCCeEEEEECCCCCCC-CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 429 LIGPHPQHIVLITGGPLNRELKIWASAEEEGW-LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 429 s~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~-~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
+ .++.-|+++- .|-.|+++.-..+++. ..++........+.|++|....+ +..+-.|-|...|+++|+
T Consensus 345 s----h~~sElLaSY-nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T------VKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 345 S----HDGSELLASY-NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT------VKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred c----CCccceeeee-cccceEEeccccccCCCCCCCcchhhccchhhcccccccc------cceeeeccCccceEEecC
Confidence 8 5665555544 6888999965544331 11222121222334888876543 223456678999999999
Q ss_pred CCCeEEEEEcCCCCCC----CCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCC
Q 039790 508 KKNAIYAIHMDYGPNP----ASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQ 566 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~~~----~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~ 566 (1395)
+-|.|+||+-.+++.. +...+...-+-..+.|++.-.|. |.-|+||--.+-
T Consensus 414 DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi--------d~DVKIWTP~~~ 468 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI--------DHDVKIWTPLTA 468 (559)
T ss_pred ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC--------ccceeeecCCcc
Confidence 9999999998776421 11111111122223455544444 556999976553
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.49 E-value=1.1e-12 Score=141.27 Aligned_cols=199 Identities=17% Similarity=0.235 Sum_probs=149.0
Q ss_pred CCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 215 DPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 215 h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
+...+++..|+. +-++|.+.+-|-+..|||++++ ....|-.|..+|++|+|.-..-+.|+++|.||.||+||++.
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 456788888876 7799999999999999999997 35678899999999999433346899999999999999997
Q ss_pred CCCCCCCcccccceEEEEEEecCC-CCCccEEEEeCCCCeEEEEE--eCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADG-DSVHPRVCWHPHKQEILMLA--IGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~-~~~v~~v~~sp~~~~lla~g--~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
-.- .++-..... .....+++|++...+++++- ....++++|.+....
T Consensus 229 leH------------STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------------ 278 (364)
T KOG0290|consen 229 LEH------------STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------------ 278 (364)
T ss_pred ccc------------ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc------------------
Confidence 541 012122222 45566899999887666543 356677888755432
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC------ceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
++..+.+|.+.|+.++|.|.....|+||+.|..+-|||+.+. .++..+. ..+ .|..+.|++ ..+.+++
T Consensus 279 -pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~-EVNqi~Ws~---~~~Dwia 352 (364)
T KOG0290|consen 279 -PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGG-EVNQIQWSS---SQPDWIA 352 (364)
T ss_pred -ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccc-eeeeeeecc---cCCCEEE
Confidence 367788999999999999998889999999999999998753 2344444 223 899999982 2455676
Q ss_pred EEecCCCeEEE
Q 039790 441 TGGPLNRELKI 451 (1395)
Q Consensus 441 s~Gs~Dg~I~I 451 (1395)
.+ .++.+.|
T Consensus 353 i~--~~kklei 361 (364)
T KOG0290|consen 353 IC--FGKKLEI 361 (364)
T ss_pred EE--ecCeeeE
Confidence 64 4555554
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3e-13 Score=155.55 Aligned_cols=242 Identities=13% Similarity=0.162 Sum_probs=166.6
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eE-EeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RS-LLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~-~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWd 286 (1395)
..+.||.+.|.|+.|+.||.+|++|+.|-.+.|||....+ ++ .-.||...|+++.|-+. +..+++||..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 5678999999999999999999999999999999988653 33 44689999999999554 345789999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
+...+.-. .+|.. .
T Consensus 124 l~~~~~~~----------------~d~~~--------------------------------------------------~ 137 (758)
T KOG1310|consen 124 LDSSKEGG----------------MDHGM--------------------------------------------------E 137 (758)
T ss_pred cccccccc----------------cccCc--------------------------------------------------c
Confidence 98644000 00000 0
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-ee------EE---ecCCCCCCeeEEEEeecCCCCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST-PL------AV---LRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~-~l------~t---l~~h~~~~V~sV~fs~~~~pdg 436 (1395)
.....+..|...|..|+-.|++++.|.+++.||+|+-||+|... |- .. +.+.-- ...|+..+ |..
T Consensus 138 ~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li-elk~ltis----p~r 212 (758)
T KOG1310|consen 138 ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI-ELKCLTIS----PSR 212 (758)
T ss_pred chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh-eeeeeeec----CCC
Confidence 11233445889999999999999999999999999999998731 11 11 111111 56788888 665
Q ss_pred cEEEEEecCCCeEEEEECCCCCC-----CC-CCCCcccccEEEEEeccCc-cccccccccc--ceEEEEeCCCCEEEEEe
Q 039790 437 IVLITGGPLNRELKIWASAEEEG-----WL-LPSDIESWKCTQTLELKSS-AELRLEDAFF--NQVVALNRAGLFLLANA 507 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~-----~~-~~~~~~~~~~l~tl~~h~~-~i~~~~~~~~--~~~l~~S~dg~~LaSgs 507 (1395)
.+++..|..|-..++||.+.... +. .+.+.....|++-|...+- ........++ ++-+.|+|+|.-|+..-
T Consensus 213 p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~ 292 (758)
T KOG1310|consen 213 PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSW 292 (758)
T ss_pred CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEee
Confidence 54444444899999999643311 11 1222344456766643221 1111111222 45688999998776666
Q ss_pred CCCeEEEEEcCCCCC
Q 039790 508 KKNAIYAIHMDYGPN 522 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~~ 522 (1395)
....||++|+..++.
T Consensus 293 ~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 293 GGEHVYLFDVNEDKS 307 (758)
T ss_pred CCeEEEEEeecCCCC
Confidence 667799999998764
No 191
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.5e-12 Score=142.42 Aligned_cols=302 Identities=11% Similarity=0.090 Sum_probs=202.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeC-CCCCEEEEEEecCCCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYIS-DPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~-h~~~V~~va~Spdg~~ 230 (1395)
+.++..+..|++|+.|..+++|.+. +.+.....++|..... |...|.|++|....++
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~d----------------------e~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVD----------------------ELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechH----------------------HHHhhcCCCCceeccCccccceEEEEEccCCee
Confidence 4445566889999999999999833 0000111144544443 4589999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEeccCCC---CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 231 ICYGLKLGNIRILNIITALRSLLRGHTQ---RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~~~~l~~H~~---~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
|++|..+|+|..-|+++.+...+..|.. .|+.|.. +|..+.|++.+.+|.|.+||++.... .+ .+
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~-~P~DN~~~~~t~~~~V~~~D~Rd~~~-------~~----~~ 187 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQ-HPTDNTLIVVTRAKLVSFIDNRDRQN-------PI----SL 187 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeeccc-CCCCceEEEEecCceEEEEeccCCCC-------CC----ce
Confidence 9999999999999999987555555654 8999999 67789999999999999999997651 01 11
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
..........+.+.|+|....++++... +++-+||.+...+.. +... ...-+......-..+.|+|
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~-~~~~------------~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV-YQRS------------MFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH-Hhhh------------ccccCcccchhhhheeeCC
Confidence 1223334556689999999988877764 556666665433210 1000 0011111112235678999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCc-eeEEecCCC--C----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC-C
Q 039790 387 WLTTRLASASLDGTVKIWDDRKST-PLAVLRPYD--G----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE-E 458 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~sg~-~l~tl~~h~--~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg-~ 458 (1395)
.| +.|.+--....-.+||+.+.+ ++..+. |. | ..+.+++|. +...+++ |+.+-.|++|.+... +
T Consensus 255 ~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~-----~D~~v~t-GSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 255 SG-NQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFI-----DDYTVAT-GSDHWGIHIWKLPRAND 326 (609)
T ss_pred CC-CeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeee-----cceeeec-cCcccceEEEecCCCcc
Confidence 98 677776666667788988744 344444 22 1 157788896 4444555 669999999998543 1
Q ss_pred CCC----------CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 459 GWL----------LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 459 ~~~----------~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.+. .|+.....+.+..+++|.+.+.. +.|++...+|++.+-.+.++||.-
T Consensus 327 s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ---------VRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 327 SYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ---------VRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccCccccCcchhhCchhheecceeEEEecccccccc---------eeecCCcceEeccchhhheecccc
Confidence 111 11222233455678888876544 899999999999999999999974
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.7e-12 Score=157.53 Aligned_cols=214 Identities=16% Similarity=0.137 Sum_probs=143.5
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFIW 285 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~IW 285 (1395)
..+..|...+.+..|+|||++|++++.+ ..|++||+.++....+....+....++| ++||++|+.++ .+|.+.||
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~w-SPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAF-SPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeE-CCCCCEEEEEEecCCcEEEE
Confidence 4456677889999999999999998754 3699999998854444433334557899 89999888765 68876555
Q ss_pred --ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 --NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 --dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
|+.++. +..+..+...+....|+|++..++.++. ++...+|.....+..
T Consensus 276 ~~d~~~~~---------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~------------- 327 (429)
T PRK01742 276 VMGANGGT---------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG------------- 327 (429)
T ss_pred EEECCCCC---------------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-------------
Confidence 655544 1122334556778999999998877764 344444432211110
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
...+ ++.. .+..|+||| ++|+.++.++ +.+||+.++........+ ...++.|+ |||++|+.+
T Consensus 328 ------~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~s----PdG~~i~~~ 389 (429)
T PRK01742 328 ------ASLV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSIS----PNGIMIIYS 389 (429)
T ss_pred ------eEEe-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceEC----CCCCEEEEE
Confidence 1222 2333 467899999 7887777765 556999988765433332 34678899 999999997
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
+ .++.+++|++... .+.+++.+..|.+.
T Consensus 390 s-~~g~~~~l~~~~~----------~G~~~~~l~~~~g~ 417 (429)
T PRK01742 390 S-TQGLGKVLQLVSA----------DGRFKARLPGSDGQ 417 (429)
T ss_pred E-cCCCceEEEEEEC----------CCCceEEccCCCCC
Confidence 7 7888888886431 11777888766654
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.5e-11 Score=150.19 Aligned_cols=313 Identities=13% Similarity=0.174 Sum_probs=206.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..++|....++++-.||.|.+|.-+.. . .+....+.+.+|.+.|.+++|+++|.||
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~----------------~--------~~~~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGS----------------S--------DDSETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred EEeccccceEEEeccCCcEEEEecccc----------------c--------cccccceEEEecccccceeEEecCCceE
Confidence 566777788888888888888873310 0 1113457889999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 232 CYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
.+|+..|.+.+|.+.++....|..-...|..+.+ ++|+++.+.+..|..|.+-...+...... +.+-.-..-....
T Consensus 267 lSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~v-S~ds~~~sl~~~DNqI~li~~~dl~~k~t---Isgi~~~~~~~k~ 342 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGKKQFLPRLGSPILHIVV-SPDSDLYSLVLEDNQIHLIKASDLEIKST---ISGIKPPTPSTKT 342 (792)
T ss_pred eecccceEEEEEeecCCCcccccccCCeeEEEEE-cCCCCeEEEEecCceEEEEeccchhhhhh---ccCccCCCccccc
Confidence 9999999999999999988778878889999999 89999999999999999988765431110 0000000000011
Q ss_pred CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 312 DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 312 ~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
...+..+.++++|..+.++..|..+.+..++.........+. .| ......+ ...+...++.++++..| .+
T Consensus 343 ~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~-----v~-~~n~~~~---~~n~~v~itav~~~~~g-s~ 412 (792)
T KOG1963|consen 343 RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ-----VC-DENYSDG---DVNIQVGITAVARSRFG-SW 412 (792)
T ss_pred cccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE-----EE-eecccCC---cceeEEeeeeehhhccc-eE
Confidence 234455678888866677777778888777765432210000 00 0000000 00233457888888886 89
Q ss_pred EEEEe--------CCC--cEEEEeCCCC----ceeEE-ecCCCCCCeeEEEEeecCCCCCc-EEEEEecCCCeEEEEECC
Q 039790 392 LASAS--------LDG--TVKIWDDRKS----TPLAV-LRPYDGHPVNCVTFLIGPHPQHI-VLITGGPLNRELKIWASA 455 (1395)
Q Consensus 392 LaSgs--------~Dg--~IrIWDl~sg----~~l~t-l~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~I~IWDl~ 455 (1395)
++|+- .|| .+|+|-.... .+... ...|.. .+...+|.. +... .++++| .||.++||-+.
T Consensus 413 maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~-~~vat~~~~---~~rs~~~vta~-~dg~~KiW~~~ 487 (792)
T KOG1963|consen 413 MATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN-AFVATIFLN---PTRSVRCVTAS-VDGDFKIWVFT 487 (792)
T ss_pred EEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc-eeEEEEEec---CcccceeEEec-cCCeEEEEEEe
Confidence 98874 243 4889965433 22222 347776 666666662 3333 778877 99999999985
Q ss_pred CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 456 tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..+. .......|.|...=..|...+. .++|+.||.+|+ .+.|++|.+||..+
T Consensus 488 ~~~n--~~k~~s~W~c~~i~sy~k~~i~---------a~~fs~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 488 DDSN--IYKKSSNWTCKAIGSYHKTPIT---------ALCFSQDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred cccc--cCcCccceEEeeeeccccCccc---------chhhcCCCcEEE-EecCCEEEEecCCC
Confidence 4411 1122356777765544554443 489999997765 55688999999876
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=7.1e-11 Score=131.81 Aligned_cols=197 Identities=11% Similarity=0.118 Sum_probs=138.4
Q ss_pred CEEEEEEecCCCEEEEEEcC--CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKL--GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~D--G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
.|.-+.|+. .++|..+.+ ..+++++.+.+....-.-....|.+|.+ +.++|+.+-.+. |+|||+++.+.+
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~Vrm---Nr~RLvV~Lee~-IyIydI~~MklL-- 119 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRM---NRKRLVVCLEES-IYIYDIKDMKLL-- 119 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEE---ccceEEEEEccc-EEEEecccceee--
Confidence 344455654 455555444 4588999887753332234557999999 567788887764 999999988732
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
..+.....+...+..+.++..+.++..-+. .+.+++||..... ++..+.
T Consensus 120 ---------hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--------------------~v~~I~ 170 (391)
T KOG2110|consen 120 ---------HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--------------------PVNTIN 170 (391)
T ss_pred ---------hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce--------------------eeeEEE
Confidence 233333233333333334444434443332 4567777664432 256778
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceeEEecC-CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGT-VKIWDDRKSTPLAVLRP-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~-IrIWDl~sg~~l~tl~~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
.|++.+-+++|+++| .+|||+|..|+ ||||.+.+|+.+..|+- -.-..|++++|+ +|+.+|.+++ ..++|+|
T Consensus 171 aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs----~ds~~L~~sS-~TeTVHi 244 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS----PDSQFLAASS-NTETVHI 244 (391)
T ss_pred ecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC----CCCCeEEEec-CCCeEEE
Confidence 999999999999999 89999999998 89999999999999973 222368999999 9999998876 8999999
Q ss_pred EECCCC
Q 039790 452 WASAEE 457 (1395)
Q Consensus 452 WDl~tg 457 (1395)
|.+...
T Consensus 245 FKL~~~ 250 (391)
T KOG2110|consen 245 FKLEKV 250 (391)
T ss_pred EEeccc
Confidence 998764
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.46 E-value=4.7e-11 Score=141.66 Aligned_cols=239 Identities=12% Similarity=0.132 Sum_probs=150.9
Q ss_pred EEcCCeEEEEECCC-Cc---eEEeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEEEECCC-CCCCCCCcccccceEEEE
Q 039790 234 GLKLGNIRILNIIT-AL---RSLLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFIWNITE-GPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~-~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~IWdl~t-g~~~~~~~~~~~~~i~~l 307 (1395)
...++.|++||+.+ +. +..+. +.+....++| ++++++|+.++ .++.|.+|++.. +. +..+
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~-spd~~~lyv~~~~~~~i~~~~~~~~g~------------l~~~ 73 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVI-SPDKRHLYVGVRPEFRVLSYRIADDGA------------LTFA 73 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEE-CCCCCEEEEEECCCCcEEEEEECCCCc------------eEEe
Confidence 36789999999964 43 23333 4456778999 88999886654 588999999973 22 1111
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
.... .......++|+|+++.++++.. ++.+..|+....+... .....+. +.....+++|+|
T Consensus 74 ~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~----------------~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 74 AESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV----------------APIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred eeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC----------------Cceeecc-CCCcccEeEeCC
Confidence 1111 1223457999999998888876 5556666653222100 0012222 233467889999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceeE-----EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCC
Q 039790 387 WLTTRLASASLDGTVKIWDDRKSTPLA-----VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWL 461 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~sg~~l~-----tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~ 461 (1395)
++..++++...++.|.+||+.+...+. .+....+.....+.|+ |+|++|+++...+++|.+||+....
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~----pdg~~lyv~~~~~~~v~v~~~~~~~--- 208 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH----PNQQYAYCVNELNSSVDVWQLKDPH--- 208 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC----CCCCEEEEEecCCCEEEEEEEeCCC---
Confidence 984444666677999999997633221 1121222357889998 9999998877569999999997420
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCC
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
...+.++++......... ..+...+.++|+|++|+++. .++.|.+|+++.
T Consensus 209 -----~~~~~~~~~~~~p~~~~~---~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 209 -----GEIECVQTLDMMPADFSD---TRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred -----CCEEEEEEEecCCCcCCC---CccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 112445555432211000 11223478899999888875 578999999965
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.46 E-value=8e-13 Score=151.68 Aligned_cols=210 Identities=17% Similarity=0.193 Sum_probs=159.3
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 229 NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
..|+.++.||.+.|.+-.......+..|.+.|.+-.| ++||.-|+++|+||.|+||.-. |-. -.
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW-~~dGtgLlt~GEDG~iKiWSrs-GML--------------RS 139 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRW-SPDGAGLLTAGEDGVIKIWSRS-GML--------------RS 139 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhccc-CCCCceeeeecCCceEEEEecc-chH--------------HH
Confidence 5688889999999998877777788899999999999 9999999999999999999854 330 11
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
+....+..|+|++|.|+...++.+..+...+.- .... ..+...+.|++-|.++.|++..
T Consensus 140 tl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKp-L~~n--------------------~k~i~WkAHDGiiL~~~W~~~s 198 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAPNSNSIVFCQGGHISIKP-LAAN--------------------SKIIRWRAHDGLVLSLSWSTQS 198 (737)
T ss_pred HHhhcCceeEEEEECCCCCceEEecCCeEEEee-cccc--------------------cceeEEeccCcEEEEeecCccc
Confidence 223446678999999999887776554433321 1111 1144556899999999999998
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 389 TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+++++|+.|-..+||| ..|..+.+-..|+- +|++|+|. || ..++. | .-+++|+=..+.|
T Consensus 199 -~lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey-~ITSva~n----pd-~~~~v-~-S~nt~R~~~p~~G----------- 257 (737)
T KOG1524|consen 199 -NIIASGGEDFRFKIWD-AQGANLFTSAAEEY-AITSVAFN----PE-KDYLL-W-SYNTARFSSPRVG----------- 257 (737)
T ss_pred -cceeecCCceeEEeec-ccCcccccCChhcc-ceeeeeec----cc-cceee-e-eeeeeeecCCCcc-----------
Confidence 8999999999999999 56788888888885 99999999 88 44443 4 3455553333222
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.+ | .++||+||..+++|+..|.+.+-++
T Consensus 258 ------------Si-------f--nlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 258 ------------SI-------F--NLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ------------ce-------E--EEEEcCCCceeeccccCceEEEeee
Confidence 11 1 3899999999999999998766554
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.46 E-value=1.1e-11 Score=154.37 Aligned_cols=272 Identities=15% Similarity=0.117 Sum_probs=172.3
Q ss_pred CCCchhhHhhhccCCCCCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCccccccee
Q 039790 131 SSGNNLLMAFFANQHQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPIT 210 (1395)
Q Consensus 131 ~~~g~~l~~ll~~~~~~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~ 210 (1395)
+++.+.+.+.|.............+++.+.+++||.||+||+|++.. +.|+..++ +...
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k-----~~~~~~s~----------------rS~l 1092 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK-----LEGEGGSA----------------RSEL 1092 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehh-----hhcCccee----------------eeeE
Confidence 44555666666544444444455566669999999999999999542 21111111 1223
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--------ceEEeccC-CCC-eEEEEEeeCCCC-EEEEEECC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--------LRSLLRGH-TQR-VTDMAFFAEDVH-LLASASVD 279 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--------~~~~l~~H-~~~-V~slaf~s~dg~-~LaSgs~D 279 (1395)
+|.-....+.++....+++.+|+|++||.|++.+++.. +......+ .+. |...+|....+. .|+.+..-
T Consensus 1093 tys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1093 TYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred EEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEec
Confidence 33334577888999999999999999999999998862 11111122 233 444455334444 78888899
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+.|..||++...... .++. .-..+.|++++.+|.+.+++.+...|.+..||.+......
T Consensus 1173 ~~iv~~D~r~~~~~w-----------~lk~-~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~--------- 1231 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAW-----------RLKN-QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL--------- 1231 (1431)
T ss_pred cceEEecchhhhhHH-----------hhhc-CccccceeEEEecCCceEEEEecCCceEEEEEeecCceee---------
Confidence 999999999765211 1111 1234678999999999977777777777777775432211
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCC--cEEEEEe--CCCcEEEEeCCCCceeEEecCCCCC--------------
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLT--TRLASAS--LDGTVKIWDDRKSTPLAVLRPYDGH-------------- 421 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~--~~LaSgs--~Dg~IrIWDl~sg~~l~tl~~h~~~-------------- 421 (1395)
..-..+...|+.+..+|--+ ...++++ ..+.|-+|++.+|.+-.++...++.
T Consensus 1232 ----------sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~k 1301 (1431)
T KOG1240|consen 1232 ----------SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARK 1301 (1431)
T ss_pred ----------cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCC
Confidence 11123456777777776543 4555554 4678999999999877776543210
Q ss_pred ----CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCC
Q 039790 422 ----PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEG 459 (1395)
Q Consensus 422 ----~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~ 459 (1395)
.....++. .-+.+++++| .|..||.||....+.
T Consensus 1302 p~~~~~~~~~~~----~~~~~~ltgg-sd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1302 PDSLAGISCGVC----EKNGFLLTGG-SDMKIRKWDPTRPEI 1338 (1431)
T ss_pred CCcccceeeecc----cCCceeeecC-CccceeeccCCCccc
Confidence 11122222 2234666766 899999999987644
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=5.1e-12 Score=155.12 Aligned_cols=211 Identities=9% Similarity=0.102 Sum_probs=144.7
Q ss_pred CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 237 LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 237 DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
+..|+|||.+......+..|...|.+.+| ++||++|+.++.+ ..|++||+.++.. ..+...
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~w-SPDG~~la~~s~~~~~~~i~i~dl~tg~~------------~~l~~~--- 246 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAW-SPDGSKLAYVSFENKKSQLVVHDLRSGAR------------KVVASF--- 246 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceE-cCCCCEEEEEEecCCCcEEEEEeCCCCce------------EEEecC---
Confidence 57899999988777778889999999999 9999999988754 3699999987751 112112
Q ss_pred CCCccEEEEeCCCCeEEEEEe-CCeEE--EEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 314 DSVHPRVCWHPHKQEILMLAI-GNRIL--KIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~-~~~ii--~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
......++|+|++..++++.. ++.+. .++... +. ...+..+...+.+.+|+||| .
T Consensus 247 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~-~~--------------------~~~lt~~~~~~~~~~wSpDG-~ 304 (429)
T PRK01742 247 RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG-GT--------------------PSQLTSGAGNNTEPSWSPDG-Q 304 (429)
T ss_pred CCccCceeECCCCCEEEEEEecCCcEEEEEEECCC-CC--------------------eEeeccCCCCcCCEEECCCC-C
Confidence 222346899999998887764 44333 233211 11 33445566778899999999 5
Q ss_pred EEE-EEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 391 RLA-SASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 391 ~La-Sgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+|+ ++..+|..+||++... .....+ .+.+ .++.|+ |||++|+.++ .++ +.+||+.++
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~S----pDG~~ia~~~-~~~-i~~~Dl~~g----------- 363 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQIS----ADGKTLVMIN-GDN-VVKQDLTSG----------- 363 (429)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccCC----CCCCEEEEEc-CCC-EEEEECCCC-----------
Confidence 555 5556788899986542 223333 4432 467898 9999998876 554 666999887
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.+........ . ....|+|||.+|+.++.++.+++|++.
T Consensus 364 -~~~~lt~~~~--~---------~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 364 -STEVLSSTFL--D---------ESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -CeEEecCCCC--C---------CCceECCCCCEEEEEEcCCCceEEEEE
Confidence 4332211111 0 136799999999999999988888764
No 199
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=99.45 E-value=8.2e-12 Score=150.72 Aligned_cols=187 Identities=23% Similarity=0.314 Sum_probs=110.7
Q ss_pred CCeEEEEECCCCce--EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC--CCCCCCCcccccceEEEEEEecC
Q 039790 237 LGNIRILNIITALR--SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE--GPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 237 DG~IrIWd~~~~~~--~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t--g~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
.+.|++-+.....+ ..++|..+.|-++.|.+-+...+. -.-|.++|||+.- |+. ...+ .+.....
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~i-------q~~l--~v~~~~p 178 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEI-------QPQL--EVTPITP 178 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhcccc-------ccce--EEeecCc
Confidence 46788888777643 577889999999999544443333 3447899999874 221 1111 2233333
Q ss_pred CCCCccEEEEeCCCC--eEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE------
Q 039790 313 GDSVHPRVCWHPHKQ--EILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS------ 383 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~--~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla------ 383 (1395)
....+..|.|+|.-. ..+.++ .++.+..+...+... ..+.+|..++++++
T Consensus 179 ~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~---------------------~l~rsHs~~~~d~a~~~~g~ 237 (1283)
T KOG1916|consen 179 YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR---------------------SLFRSHSQRVTDMAFFAEGV 237 (1283)
T ss_pred CCCCcceeeecccccccceeeeccCCCceeEeeechHHH---------------------HHHHhcCCCcccHHHHhhch
Confidence 444556788877422 222222 234443332222111 22333554444443
Q ss_pred -----EecCCCcEEEEEeCCCcEEEEeCC-----CCceeEEecCCCCCCeeEEEEeecC-----CCCCcEEEEEecCCCe
Q 039790 384 -----MCQWLTTRLASASLDGTVKIWDDR-----KSTPLAVLRPYDGHPVNCVTFLIGP-----HPQHIVLITGGPLNRE 448 (1395)
Q Consensus 384 -----fspdg~~~LaSgs~Dg~IrIWDl~-----sg~~l~tl~~h~~~~V~sV~fs~~~-----~pdg~~L~s~Gs~Dg~ 448 (1395)
+|||| +.||.++.||.+++|.+. .-.|++.++.|++++-.|..|.-.. .+...+++++...+..
T Consensus 238 ~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre 316 (1283)
T KOG1916|consen 238 LKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNRE 316 (1283)
T ss_pred hhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcc
Confidence 58998 899999999999999764 3478889999986444444343000 0123467777777889
Q ss_pred EEEEECCC
Q 039790 449 LKIWASAE 456 (1395)
Q Consensus 449 I~IWDl~t 456 (1395)
+++|....
T Consensus 317 ~k~w~~a~ 324 (1283)
T KOG1916|consen 317 EKFWAEAP 324 (1283)
T ss_pred eeEeeccc
Confidence 99998744
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.2e-11 Score=151.61 Aligned_cols=286 Identities=15% Similarity=0.156 Sum_probs=176.1
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CCCEEEEEEc
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NRNYICYGLK 236 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg~~LasGs~ 236 (1395)
+.++++...-.|++|| | .+|+.|.|-+ .|. .-...|+.+.+-- |..++.+|+.
T Consensus 1077 p~i~~ad~r~~i~vwd-~-e~~~~l~~F~---------n~~--------------~~~t~Vs~l~liNe~D~aLlLtas~ 1131 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWD-W-EKGRLLNGFD---------NGA--------------FPDTRVSDLELINEQDDALLLTASS 1131 (1387)
T ss_pred ceeEEcCCcceEEEEe-c-ccCceecccc---------CCC--------------CCCCccceeeeecccchhheeeecc
Confidence 6677777667888888 3 3455552100 000 1123455554432 5578999999
Q ss_pred CCeEEEEECCC-C----c-eEEe---c----cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccce
Q 039790 237 LGNIRILNIIT-A----L-RSLL---R----GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 237 DG~IrIWd~~~-~----~-~~~l---~----~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
||.||||+-.- + + +..+ . +-.+.=.-+.| .....+|+++|.-..|+|||.....+....+
T Consensus 1132 dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dW-qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP------ 1204 (1387)
T KOG1517|consen 1132 DGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDW-QQQSGHLLVTGDVRSIRIWDAHKEQVVADIP------ 1204 (1387)
T ss_pred CceEEEecccccccCCceeEEeeccccccCccCCCCCeeeeh-hhhCCeEEecCCeeEEEEEecccceeEeecc------
Confidence 99999997432 1 1 1111 1 11222244667 4444455555557899999999766332222
Q ss_pred EEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC--eEE
Q 039790 304 VVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE--ITE 381 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~--V~s 381 (1395)
.+.+..++.+.-+..++.++++|..++.+++++.+..... ..+.....|.+. |..
T Consensus 1205 -------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------s~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1205 -------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------SLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred -------cCCCccceeecccccCCceEEEeecCCceEEeecccCCcc----------------ccceeecccCCccccee
Confidence 2244455555555555566666666555555554432211 225666778887 999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCCC--CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPYD--GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~--~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+.+.+.|-..|++|+.||.|++||+|... ...++..|- |..++++... ++...+++|+ . +.|+||++...
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH----~hapiiAsGs-~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH----EHAPIIASGS-A-QLIKIYSLSGE 1335 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec----cCCCeeeecC-c-ceEEEEecChh
Confidence 99999875569999999999999999742 222333443 3248888886 7888877754 4 99999998653
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.+..++.+.+-... ..+ -..+++|+|-..+|++|+.|++|.||....+
T Consensus 1336 -------------~l~~~k~n~~F~~q-~~g-s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1336 -------------QLNIIKYNPGFMGQ-RIG-SVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -------------hhcccccCcccccC-cCC-CcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 23333322211111 111 1247999999999999999999999987653
No 201
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.7e-12 Score=146.81 Aligned_cols=315 Identities=16% Similarity=0.204 Sum_probs=211.1
Q ss_pred ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC--
Q 039790 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-- 326 (1395)
Q Consensus 249 ~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-- 326 (1395)
....|.+|.+.|..|.| ...|..|++|+.|..|.+||...+.. .+.+..+|...+....|-|..
T Consensus 134 l~~kL~~H~GcVntV~F-N~~Gd~l~SgSDD~~vv~WdW~~~~~-------------~l~f~SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHF-NQRGDVLASGSDDLQVVVWDWVSGSP-------------KLSFESGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred hhhcccCCCCccceeee-cccCceeeccCccceEEeehhhccCc-------------ccccccccccchhhhhccCCCCC
Confidence 34578899999999999 88999999999999999999998762 345566666666666666643
Q ss_pred CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 039790 327 QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD 406 (1395)
Q Consensus 327 ~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl 406 (1395)
..++.++.++.+..-.....+.. .....+..|.+.|..++.-|+.+.-|.+++.|+.++-+|+
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~-----------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl 262 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYV-----------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL 262 (559)
T ss_pred cCceeccccCceeeeeeccccce-----------------ecceecccccCccceeeecCCCCCcccccccccceeeeee
Confidence 35666677777665544333221 2245667799999999999999999999999999999999
Q ss_pred CCCceeEEec--CCCCC---CeeEEEEeecCCCCCc-EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 407 RKSTPLAVLR--PYDGH---PVNCVTFLIGPHPQHI-VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 407 ~sg~~l~tl~--~h~~~---~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
+.+.+-..+. .++.. ..++++.. |... .++++| .|..+++||.+..... .....+..|..|.-
T Consensus 263 r~~~pa~~~~cr~~~~~~~v~L~~Ia~~----P~nt~~faVgG-~dqf~RvYD~R~~~~e------~~n~~~~~f~p~hl 331 (559)
T KOG1334|consen 263 RQDVPAEKFVCREADEKERVGLYTIAVD----PRNTNEFAVGG-SDQFARVYDQRRIDKE------ENNGVLDKFCPHHL 331 (559)
T ss_pred ccCCccceeeeeccCCccceeeeeEecC----CCCccccccCC-hhhhhhhhcccchhhc------cccchhhhcCCccc
Confidence 9886544432 22221 45677776 6666 455555 9999999999875210 11122344443332
Q ss_pred ccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC----Ccceeeeee-eecccc-----EEEEecCCCCc
Q 039790 481 AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA----STRMDYIAE-FTVTMP-----ILSLTGTTTDA 550 (1395)
Q Consensus 481 ~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~----~~~~~~i~~-f~~~~~-----ils~~~~~~d~ 550 (1395)
.. .....+.+++|+.+|.-|++.-.|-.||++.-+.+.... .++-.++.. |++|.. -+-|-|-....
T Consensus 332 ~~---d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 332 VE---DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred cc---cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 21 223344579999888877788889999999655433211 222234444 666522 22333321133
Q ss_pred C--cCCCCeEEEEEcCCCceeee---cccceEEecCCCCC--eecccCCCceEEEeecCCCCccee
Q 039790 551 S--PDGEHIVQIYCVQTQAIQQY---ALDLSQCLPPPLEN--AELEKTDSNATRAFDVANPDGSAS 609 (1395)
Q Consensus 551 ~--~s~dg~V~lWdv~t~~i~~~---~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~tg~~~~~ 609 (1395)
+ ++.-|.|.||+-.++++.++ --+.+.||-+.+.- ++.++-|..|+ ||---+.+....
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVK-IWTP~~~er~~~ 473 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVK-IWTPLTAERATE 473 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCcccee-eecCCccccccC
Confidence 3 24569999999999988643 33478999999865 88888886665 996655554333
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.41 E-value=5.1e-12 Score=134.78 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=121.4
Q ss_pred CCCeEEEEEeeCCCC--EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe
Q 039790 257 TQRVTDMAFFAEDVH--LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~--~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
.+.|.+..|-..++. +|+.|.++|.|.+||+.++.....++.- .....-...|...+.++.|.+....=+.+|.
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~----~kv~~~~ash~qpvlsldyas~~~rGisgga 225 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS----SKVESPNASHKQPVLSLDYASSCDRGISGGA 225 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccc----cccccchhhccCcceeeeechhhcCCcCCCc
Confidence 345666665222232 5778899999999999997522222110 0112223457788888988876666677777
Q ss_pred CCeEEEEEcCCC-CccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE
Q 039790 335 GNRILKIDSNRV-GKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA 413 (1395)
Q Consensus 335 ~~~ii~~d~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~ 413 (1395)
++.++.|..... +.. .+.....+ ..-.|..+.+-||+ +.|||+++|++||||..++..++.
T Consensus 226 ~dkl~~~Sl~~s~gsl---------------q~~~e~~l--knpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSL---------------QIRKEITL--KNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred cccceeeeeccccCcc---------------cccceEEe--cCCCccceEEccCC-cEEeecccCCcEEEEEeccCCchh
Confidence 788887765432 110 00001222 23357889999998 899999999999999999999999
Q ss_pred EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 414 VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 414 tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
.++-|.+ .|.+|+|+ |+...+++++ .|++|.+|++
T Consensus 288 VLkyHsa-gvn~vAfs----pd~~lmAaas-kD~rISLWkL 322 (323)
T KOG0322|consen 288 VLKYHSA-GVNAVAFS----PDCELMAAAS-KDARISLWKL 322 (323)
T ss_pred hhhhhhc-ceeEEEeC----CCCchhhhcc-CCceEEeeec
Confidence 9999997 99999999 9988888866 9999999986
No 203
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.41 E-value=1.7e-11 Score=132.34 Aligned_cols=264 Identities=13% Similarity=0.105 Sum_probs=180.6
Q ss_pred ceeeeeCCCCCEEEEEEec---CCCEEEEEEc----CCeEEEEECC--CCceEEe--ccCCCCeEEEEEeeCCC-----C
Q 039790 208 PITKYISDPGLVLGRQIAV---NRNYICYGLK----LGNIRILNII--TALRSLL--RGHTQRVTDMAFFAEDV-----H 271 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Sp---dg~~LasGs~----DG~IrIWd~~--~~~~~~l--~~H~~~V~slaf~s~dg-----~ 271 (1395)
.+.+|..+ -.++++.|+. .+.+||.|+. ...|.|..++ +++.... ..|.-+++.+.| .|+. +
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~w-iPd~~g~~pd 114 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMW-IPDSKGVYPD 114 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEe-cCCccccCcc
Confidence 34445433 4567777874 3457888874 4667776554 3433222 479999999999 6654 4
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCC-ccc
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVG-KGE 350 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~-~~~ 350 (1395)
+|||++. .+|+|.+...... .....+........+...++++.|+.-...++.+++-++.+.+|+...+ .+.
T Consensus 115 lLATs~D--~LRlWri~~ee~~-----~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~ 187 (364)
T KOG0290|consen 115 LLATSSD--FLRLWRIGDEESR-----VELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT 187 (364)
T ss_pred hhhcccC--eEEEEeccCcCCc-----eehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence 6777654 7999999853200 0011111112234456788899999888888877776666666654433 110
Q ss_pred cccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCC-CCCeeEEEE
Q 039790 351 RFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYD-GHPVNCVTF 428 (1395)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~-~~~V~sV~f 428 (1395)
-...+..|++.|++++|...+...||+.+.||.||+||+|...--.. ++... ..+...++|
T Consensus 188 -----------------vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 188 -----------------VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred -----------------eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 02345579999999999998878999999999999999998643222 22222 237899999
Q ss_pred eecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEe
Q 039790 429 LIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANA 507 (1395)
Q Consensus 429 s~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs 507 (1395)
+ ..|-++|++-.-....|.|.|++.. ...+.++..|...+.. ++|.| .+..|++++
T Consensus 251 n---kqDpnymATf~~dS~~V~iLDiR~P-----------~tpva~L~~H~a~VNg---------IaWaPhS~~hictaG 307 (364)
T KOG0290|consen 251 N---KQDPNYMATFAMDSNKVVILDIRVP-----------CTPVARLRNHQASVNG---------IAWAPHSSSHICTAG 307 (364)
T ss_pred C---cCCchHHhhhhcCCceEEEEEecCC-----------CcceehhhcCcccccc---------eEecCCCCceeeecC
Confidence 8 2456678877756678999999875 3667889999887755 66655 567999999
Q ss_pred CCCeEEEEEcCCC
Q 039790 508 KKNAIYAIHMDYG 520 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g 520 (1395)
+|..+.|||+..-
T Consensus 308 DD~qaliWDl~q~ 320 (364)
T KOG0290|consen 308 DDCQALIWDLQQM 320 (364)
T ss_pred CcceEEEEecccc
Confidence 9999999999863
No 204
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.40 E-value=1.2e-11 Score=133.22 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=159.8
Q ss_pred ceeeee-CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce--EEe-----ccCCCCeEEEEEee-CCCCEEEEEEC
Q 039790 208 PITKYI-SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALR--SLL-----RGHTQRVTDMAFFA-EDVHLLASASV 278 (1395)
Q Consensus 208 ~i~~l~-~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~--~~l-----~~H~~~V~slaf~s-~dg~~LaSgs~ 278 (1395)
++..+. .+-+.|.|+.|.|++..|++-. |..|.+|++..+.. ..+ .+|....++-+|++ .+++.+++.+
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~- 191 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS- 191 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-
Confidence 333443 4557899999999999888765 78999999988632 222 23666788889954 4777777655
Q ss_pred CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
|+++..||+++.++ ...+...|...+..+.|+|+.++++++|.+++-+++|+.+..+
T Consensus 192 d~tl~~~D~RT~~~-------------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---------- 248 (370)
T KOG1007|consen 192 DSTLQFWDLRTMKK-------------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---------- 248 (370)
T ss_pred CCcEEEEEccchhh-------------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----------
Confidence 78999999998762 2234455667788899999999999888877666666544322
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-----------------------------
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS----------------------------- 409 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg----------------------------- 409 (1395)
.++..+.+|..+|+++.|+|....+|++|+.|..|.+|...+-
T Consensus 249 --------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 249 --------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred --------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 2367788999999999999998789999999999999964210
Q ss_pred ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 410 TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 410 ~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
..+.++..|.+ .|++++|+ .-..+++++=|.||.+.|=.+..
T Consensus 321 g~l~tydehED-SVY~~aWS----sadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 321 GQLETYDEHED-SVYALAWS----SADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccc-ceEEEeec----cCCCeeEEEeccCceEEeecCCh
Confidence 13457788887 99999999 66778887777999998876643
No 205
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.40 E-value=7.7e-13 Score=158.45 Aligned_cols=248 Identities=19% Similarity=0.237 Sum_probs=164.7
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL 237 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D 237 (1395)
+..+++|+.|..|++|+.. + ..++..+.||.+.|+.++.+.+..++++++.|
T Consensus 202 g~~Iitgsdd~lvKiwS~e--------------------t--------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 202 GRYIITGSDDRLVKIWSME--------------------T--------ARCLASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred cceEeecCccceeeeeecc--------------------c--------hhhhccCCCCccccchhccchhhhhhhhcccC
Confidence 4667777777777777722 1 24556778999999999999999999999999
Q ss_pred CeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc---ccc-cceEEEEEEecC
Q 039790 238 GNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP---QIL-GKIVVAIQILAD 312 (1395)
Q Consensus 238 G~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~---~~~-~~~i~~l~~~~~ 312 (1395)
..|++|.+.++ .+..++||++.|++|+| +|-. +.+.||++++||.+-.. ....| .++ +..+..+.+...
T Consensus 254 ~vIrvWrl~~~~pvsvLrghtgavtaiaf-sP~~----sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVLRGHTGAVTAIAF-SPRA----SSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSILFENN 327 (1113)
T ss_pred ceEEEEecCCCchHHHHhccccceeeecc-Cccc----cCCCCCceEeccccccc-cccCCCCCCcccccceeeeecccc
Confidence 99999999998 47899999999999999 6643 78899999999998211 00000 001 111111111100
Q ss_pred C-------------CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc--eEEEcccCC
Q 039790 313 G-------------DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING--VQLVGKHDG 377 (1395)
Q Consensus 313 ~-------------~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~l~~h~~ 377 (1395)
. ......++|.... .+++.+.++.- ..............|.+..+ .+.+.+|.+
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~l~~~~~~-lif~t~ssd~~----------~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQLAWRSNL-LIFVTRSSDLS----------SIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred ccccccccCCcccccchhhHhhhhccc-eEEEecccccc----------ccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 0 0111122222221 12222221100 00000111112234555555 677889999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.++.+.|+|.++....+++.||...|||+-.|.+++.+. +|. .+....|| +||..++..- .-|.+.|.....
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~--kl~d~kFS----qdgts~~lsd-~hgql~i~g~gq 469 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG--KLVDGKFS----QDGTSIALSD-DHGQLYILGTGQ 469 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc--eeeccccC----CCCceEecCC-CCCceEEeccCC
Confidence 999999999998888899999999999999998887665 553 68899999 9999988744 668888876544
Q ss_pred C
Q 039790 457 E 457 (1395)
Q Consensus 457 g 457 (1395)
+
T Consensus 470 s 470 (1113)
T KOG0644|consen 470 S 470 (1113)
T ss_pred C
Confidence 3
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.8e-10 Score=127.81 Aligned_cols=321 Identities=16% Similarity=0.159 Sum_probs=194.5
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC-CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH-TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H-~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
.-.+..++|++.-..+|++..|-.|||||-...+...++.- ...|++|+|.+-.+..|+.|+.. -|.||.....-..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~- 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA- 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc-
Confidence 35677889998777789999999999999888665555543 35699999965566778888875 5899987643210
Q ss_pred CCcccccceEEEEEEe-cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 295 DKPQILGKIVVAIQIL-ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
..+ +.+....+.+++ ..+...|+++.|.+++..++.++.++.-+++|+...+... ....
T Consensus 176 ~r~-~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~-------------------pL~~ 235 (445)
T KOG2139|consen 176 NRN-IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI-------------------PLIP 235 (445)
T ss_pred ccc-cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-------------------cccc
Confidence 000 000011122222 2234789999999999988888888887777776655431 1112
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC-CCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDD-RKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl-~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
...+.+.-+.||||| .+|..++-|+..++|+. ++..+.+-.-+. + .|...+|+ |+|++|+.+.+ |.=+||
T Consensus 236 ~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgs-g-rvqtacWs----pcGsfLLf~~s--gsp~ly 306 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGS-G-RVQTACWS----PCGSFLLFACS--GSPRLY 306 (445)
T ss_pred cCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccC-C-ceeeeeec----CCCCEEEEEEc--CCceEE
Confidence 244678899999999 79999999999999954 445544444443 4 89999999 99999888764 455566
Q ss_pred ECCCCCC--CCC-CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCe--------EEEEEcCCCC
Q 039790 453 ASAEEEG--WLL-PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNA--------IYAIHMDYGP 521 (1395)
Q Consensus 453 Dl~tg~~--~~~-~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~--------I~iWdl~~g~ 521 (1395)
.+.-.+. ... +.+.+.-..+..+............+--.+.++|.|.|.+|++.-+.+. |.+||.....
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 5543311 111 1111111122222111100000001112347999999999998765443 4555543311
Q ss_pred CCCCcceeeeeeeeccccE-EEEecCCCCcCcCCCCeEEEEEcCCCceeeecccce
Q 039790 522 NPASTRMDYIAEFTVTMPI-LSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLS 576 (1395)
Q Consensus 522 ~~~~~~~~~i~~f~~~~~i-ls~~~~~~d~~~s~dg~V~lWdv~t~~i~~~~~~~~ 576 (1395)
. -.+.+.....+..|. ++|... ..++.+..-+-.||.++.|-+.+.
T Consensus 387 ~---vels~cg~i~ge~P~~IsF~pl------~n~g~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 387 P---VELSYCGMIGGEYPAYISFGPL------KNEGRLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred c---eEEEecccccCCCCceEEeeec------ccCCcEEEEEeccCceEeeeeEEE
Confidence 0 011111222222232 344444 246667777777898888876655
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=5.2e-12 Score=143.27 Aligned_cols=201 Identities=19% Similarity=0.188 Sum_probs=146.3
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
.+++|+.+|..|++|+.||++|||++..- .+..+..|...|.+|.| ++||.+|++-+.| ..+||+..+|.++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~F-S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDF-SPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCcccccee-CCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 78899999999999999999999996654 56677889999999999 9999999999999 999999999863322210
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCC---Ce-EEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHK---QE-ILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~---~~-lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
...+.....|.|..++ .. +++... .+.+..++...- +... .-..+...
T Consensus 226 ------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w------~~~~---------~l~~~~~~ 278 (398)
T KOG0771|consen 226 ------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLW------SGSN---------FLRLRKKI 278 (398)
T ss_pred ------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeee------cccc---------ccchhhhh
Confidence 1122233356665554 22 222222 344444433211 1100 00011112
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.....|.+++.+.+| +++|.|+.||.|-|++..+-++++..+ .|.+ .|+.|.|+ ||.+++++.. .|.++.|.
T Consensus 279 ~~~~siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~-~VT~ltF~----Pdsr~~~svS-s~~~~~v~ 351 (398)
T KOG0771|consen 279 KRFKSISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLG-FVTGLTFS----PDSRYLASVS-SDNEAAVT 351 (398)
T ss_pred hccCcceeEEEcCCC-cEEEEeccCCcEEEEEeceeeeeEeehhhhee-eeeeEEEc----CCcCcccccc-cCCceeEE
Confidence 234579999999999 899999999999999999988887665 7877 99999999 9999999965 88888888
Q ss_pred ECCC
Q 039790 453 ASAE 456 (1395)
Q Consensus 453 Dl~t 456 (1395)
.+.-
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 7754
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.38 E-value=2.2e-11 Score=149.25 Aligned_cols=250 Identities=12% Similarity=0.045 Sum_probs=174.4
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE--EE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY--IC 232 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~--La 232 (1395)
|+++..|+.|..+|.|.+||+.....+... ..-.....|...|+.+.|-.+..- ++
T Consensus 252 p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s----------------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~ 309 (555)
T KOG1587|consen 252 PFDPNLLAGGCYNGQVVLWDLRKGSDTPPS----------------------GLSALEVSHSEPVTAVVWLQNEHNTEFF 309 (555)
T ss_pred cCCcceEEeeccCceEEEEEccCCCCCCCc----------------------ccccccccCCcCeEEEEEeccCCCCceE
Confidence 445578888888889989885432211110 011223468899999999876544 99
Q ss_pred EEEcCCeEEEEECCCC----ceEEe--c-------cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccc
Q 039790 233 YGLKLGNIRILNIITA----LRSLL--R-------GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 233 sGs~DG~IrIWd~~~~----~~~~l--~-------~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
+++.||.|+.|+++.- ....+ . .-...+++++|...+...|+.|+.+|.|+--+-.......
T Consensus 310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~----- 384 (555)
T KOG1587|consen 310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP----- 384 (555)
T ss_pred EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc-----
Confidence 9999999999987652 01111 1 1234689999977788899999999998874333222000
Q ss_pred ccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe
Q 039790 300 LGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI 379 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V 379 (1395)
............|.+.|+.+.++|-+..+|.++.+.++.+|...... .++..+..+.+.|
T Consensus 385 -~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~-------------------~Pl~~~~~~~~~v 444 (555)
T KOG1587|consen 385 -EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA-------------------SPLLSLDSSPDYV 444 (555)
T ss_pred -cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC-------------------Ccchhhhhcccee
Confidence 01111233455678899999999999988888887777666543111 1133445577789
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 380 TELSMCQWLTTRLASASLDGTVKIWDDRKS--TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
++++|||-.+..|+++..||.|.|||+... .++.+.+-+.. ..+.+.|+ +.|+.|++| ...|+|++|++...
T Consensus 445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~-~l~~~~~s----~~g~~lavG-d~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP-ALTRVRWS----PNGKLLAVG-DANGTTHILKLSES 518 (555)
T ss_pred eeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc-ccceeecC----CCCcEEEEe-cCCCcEEEEEcCch
Confidence 999999998889999999999999998764 56666665543 77888887 779888885 49999999999643
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.32 E-value=2.9e-12 Score=145.68 Aligned_cols=229 Identities=17% Similarity=0.244 Sum_probs=173.5
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
-+.+.++.+|++|+.|+..|.|-.+|+.++.++.-..-...|.++.| -.+..+||.+- ...++|||-. |.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~-LHneq~~AVAQ-K~y~yvYD~~-Gt------- 201 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTF-LHNEQFFAVAQ-KKYVYVYDNN-GT------- 201 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhh-hcchHHHHhhh-hceEEEecCC-Cc-------
Confidence 35678999999999999999999999999876655555678999999 56666776664 4689999965 33
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
-+.|++. ...+..+.|-|.. +++++++..+...|-+...|.. +..+....+.
T Consensus 202 ----ElHClk~----~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gkl-------------------Va~~~t~~G~ 253 (545)
T KOG1272|consen 202 ----ELHCLKR----HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKL-------------------VASIRTGAGR 253 (545)
T ss_pred ----EEeehhh----cCchhhhcccchh-heeeecccCCceEEEeechhhh-------------------hHHHHccCCc
Confidence 2334322 2346678888876 6777777777777766665543 2233345567
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
+..++-+|.+ -.+-+|...|+|.+|......++..+-.|.+ +|.+|++. ++|+|++|+| .|+.|+|||++..
T Consensus 254 ~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~----~~G~YMaTtG-~Dr~~kIWDlR~~- 325 (545)
T KOG1272|consen 254 TDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVD----RGGRYMATTG-LDRKVKIWDLRNF- 325 (545)
T ss_pred cchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEEC----CCCcEEeecc-cccceeEeeeccc-
Confidence 7888889987 6899999999999999999999999999998 99999998 9999999999 9999999999987
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
..+.++.... ....+++|..|.+. .+....|.||.
T Consensus 326 -----------~ql~t~~tp~----------~a~~ls~SqkglLA--~~~G~~v~iw~ 360 (545)
T KOG1272|consen 326 -----------YQLHTYRTPH----------PASNLSLSQKGLLA--LSYGDHVQIWK 360 (545)
T ss_pred -----------cccceeecCC----------Ccccccccccccee--eecCCeeeeeh
Confidence 4444444311 11247787766543 44456789995
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.32 E-value=2.9e-10 Score=131.68 Aligned_cols=192 Identities=19% Similarity=0.249 Sum_probs=132.5
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEec-----cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRSLLR-----GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~~l~-----~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
+.+--|..|-..|.|.++|........+. -....|+++.|-+-+...|+.+-.+|.+++||..-.-. .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~-~------ 255 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG-A------ 255 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-C------
Confidence 46677888888899999887664322211 12368999999777778888999999999999742110 0
Q ss_pred cceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 301 GKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 301 ~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
...+....+++..+ +... +...... .++....--.+.|+
T Consensus 256 ---------------t~p~~~~~k~~~~f-~i~t------~ksk~~r-------------------NPv~~w~~~~g~in 294 (636)
T KOG2394|consen 256 ---------------TAPSYQALKDGDQF-AILT------SKSKKTR-------------------NPVARWHIGEGSIN 294 (636)
T ss_pred ---------------CCCcccccCCCCee-EEee------eeccccC-------------------CccceeEecccccc
Confidence 00011111222211 1111 0000000 01111112345899
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
.++|++|| .+||+.+.||.+||||..+.+++..++.+-+ ...||+|| |||+||+++| .|.-|.||.+...
T Consensus 295 ~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLCvcWS----PDGKyIvtGG-EDDLVtVwSf~er--- 364 (636)
T KOG2394|consen 295 EFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLCVCWS----PDGKYIVTGG-EDDLVTVWSFEER--- 364 (636)
T ss_pred ceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEEEEEc----CCccEEEecC-CcceEEEEEeccc---
Confidence 99999998 8999999999999999999998888888877 89999999 9999999988 9999999999877
Q ss_pred CCCCCcccccEEEEEeccCccccc
Q 039790 461 LLPSDIESWKCTQTLELKSSAELR 484 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~ 484 (1395)
+.+..=.+|.+++..
T Consensus 365 ---------RVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 365 ---------RVVARGQGHKSWVSV 379 (636)
T ss_pred ---------eEEEeccccccceee
Confidence 777766777665543
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=4e-10 Score=138.23 Aligned_cols=205 Identities=15% Similarity=0.145 Sum_probs=137.3
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEc---CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEE-ECCC
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLK---LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASA-SVDG 280 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~---DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSg-s~Dg 280 (1395)
.+...+.+..+...+.+.+|+|||+.|++.+. +..|++||+.++....+....+.+..++| ++||+.|+.. +.+|
T Consensus 187 dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~-SPDG~~La~~~~~~g 265 (429)
T PRK03629 187 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAF-SPDGSKLAFALSKTG 265 (429)
T ss_pred CCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEE-CCCCCEEEEEEcCCC
Confidence 34444555566678899999999999998653 45799999998876655555555667899 9999988765 4455
Q ss_pred --cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCC
Q 039790 281 --RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 281 --tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~ 355 (1395)
.|++||+.++. ..++ ..+...+....|+|++..++.++..+ .++.++... +.
T Consensus 266 ~~~I~~~d~~tg~--------------~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-g~------- 322 (429)
T PRK03629 266 SLNLYVMDLASGQ--------------IRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-GA------- 322 (429)
T ss_pred CcEEEEEECCCCC--------------EEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-CC-------
Confidence 49999998776 1122 22334567899999999887776543 333333321 11
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecC
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
...+..+...+.+..|+||| ++|+..+.+ ..|.+||+.++... .+... . ......|+
T Consensus 323 -------------~~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~-~~~~p~~S--- 382 (429)
T PRK03629 323 -------------PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-F-LDETPSIA--- 382 (429)
T ss_pred -------------eEEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeE-EeCCC-C-CCCCceEC---
Confidence 22222344456678999999 666665543 35889999888643 44322 1 34578899
Q ss_pred CCCCcEEEEEecCCCe---EEEEECC
Q 039790 433 HPQHIVLITGGPLNRE---LKIWASA 455 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~---I~IWDl~ 455 (1395)
|||++|+.++ .++. +.+|++.
T Consensus 383 -pDG~~i~~~s-~~~~~~~l~~~~~~ 406 (429)
T PRK03629 383 -PNGTMVIYSS-SQGMGSVLNLVSTD 406 (429)
T ss_pred -CCCCEEEEEE-cCCCceEEEEEECC
Confidence 9999999877 5553 6777774
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.29 E-value=1.2e-09 Score=126.24 Aligned_cols=185 Identities=12% Similarity=0.090 Sum_probs=131.7
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
-+....|.+.|.|-.|++||.-|++++.||.|+||....-.+.++......|+|++| .++.+-++-|-. +.+.|=-+.
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W-~p~S~~vl~c~g-~h~~IKpL~ 174 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW-APNSNSIVFCQG-GHISIKPLA 174 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE-CCCCCceEEecC-CeEEEeecc
Confidence 345567999999999999999999999999999999766566667777789999999 666665555543 355555554
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
... .+--...|++.+.++.|++..+.++.+|.+-+..+||. .. ..
T Consensus 175 ~n~--------------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G-~~------------------- 219 (737)
T KOG1524|consen 175 ANS--------------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QG-AN------------------- 219 (737)
T ss_pred ccc--------------ceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cC-cc-------------------
Confidence 432 22334578899999999999875555555555555543 21 11
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
+..-..|..+|++++|.|+ ..++.+|.. ++| |. ...| .|..++|| +||..++.++ ..|
T Consensus 220 Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t~R------------~~~p~~G-SifnlsWS----~DGTQ~a~gt-~~G 278 (737)
T KOG1524|consen 220 LFTSAAEEYAITSVAFNPE--KDYLLWSYN-TAR------------FSSPRVG-SIFNLSWS----ADGTQATCGT-STG 278 (737)
T ss_pred cccCChhccceeeeeeccc--cceeeeeee-eee------------ecCCCcc-ceEEEEEc----CCCceeeccc-cCc
Confidence 2333469999999999998 466666643 333 33 2334 89999999 9999888765 677
Q ss_pred eEEE
Q 039790 448 ELKI 451 (1395)
Q Consensus 448 ~I~I 451 (1395)
.+.+
T Consensus 279 ~v~~ 282 (737)
T KOG1524|consen 279 QLIV 282 (737)
T ss_pred eEEE
Confidence 6654
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=3e-09 Score=130.63 Aligned_cols=214 Identities=12% Similarity=0.111 Sum_probs=141.0
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC---CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV---DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
..|.+||.+......+..+...+.+.+| ++||+.|+..+. +..|++||+.+++.. .+ ....
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~w-SPDG~~la~~s~~~g~~~i~i~dl~~G~~~------------~l---~~~~ 242 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAW-SPDGSKLAYVTFESGRSALVIQTLANGAVR------------QV---ASFP 242 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEE-cCCCCEEEEEEecCCCcEEEEEECCCCCeE------------Ec---cCCC
Confidence 3799999988766666677788999999 999999887643 457999999887510 11 1122
Q ss_pred CCccEEEEeCCCCeEEEEEeC-C--eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 315 SVHPRVCWHPHKQEILMLAIG-N--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~-~--~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.......|+|+|..++.+... + .+++|+... +. ...+..+...+....|+||| +.
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~--------------------~~~lt~~~~~~~~~~wSPDG-~~ 300 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ--------------------IRQVTDGRSNNTEPTWFPDS-QN 300 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CC--------------------EEEccCCCCCcCceEECCCC-CE
Confidence 234468999999988876542 2 355555422 11 23333344567889999999 66
Q ss_pred EEEEeC-CCcEEEE--eCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC--CeEEEEECCCCCCCCCCCCc
Q 039790 392 LASASL-DGTVKIW--DDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN--RELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 392 LaSgs~-Dg~IrIW--Dl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D--g~I~IWDl~tg~~~~~~~~~ 466 (1395)
|+..+. ++..+|| |+.++.. ..+..+.. .+.+..|+ |||++|+.++..+ ..|.+||+.++
T Consensus 301 I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~-~~~~~~~S----pDG~~Ia~~~~~~g~~~I~~~dl~~g--------- 365 (429)
T PRK03629 301 LAYTSDQAGRPQVYKVNINGGAP-QRITWEGS-QNQDADVS----SDGKFMVMVSSNGGQQHIAKQDLATG--------- 365 (429)
T ss_pred EEEEeCCCCCceEEEEECCCCCe-EEeecCCC-CccCEEEC----CCCCEEEEEEccCCCceEEEEECCCC---------
Confidence 666554 4554555 6666654 34443433 56789999 9999998876343 35888998776
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCe---EEEEEcC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNA---IYAIHMD 518 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~---I~iWdl~ 518 (1395)
.. ..+.... . .....|++||.+|+..+.++. +++|+++
T Consensus 366 ---~~-~~Lt~~~-~---------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 366 ---GV-QVLTDTF-L---------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred ---Ce-EEeCCCC-C---------CCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 32 2222111 0 113678999999999887764 6777764
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.4e-09 Score=133.92 Aligned_cols=215 Identities=12% Similarity=0.095 Sum_probs=141.7
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
..|.|||..++....+..|...+.+.+| ++||+.|+.++.+ ..|++||+.++.. . .+....
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~w-SpDg~~la~~s~~~~~~~l~~~dl~~g~~--------------~-~l~~~~ 247 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAW-SPDGKKLAYVSFERGRSAIYVQDLATGQR--------------E-LVASFR 247 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccC-CCCCCEEEEEecCCCCcEEEEEECCCCCE--------------E-EeccCC
Confidence 4699999987777777778889999999 8999999988743 4699999988761 1 111223
Q ss_pred CCccEEEEeCCCCeEEEEEe-CC--eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 315 SVHPRVCWHPHKQEILMLAI-GN--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~-~~--~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.......|+|++..++.+.. ++ .+++|+... +. ...+..+......++|+||| ++
T Consensus 248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~--------------------~~~lt~~~~~~~~~~~spDG-~~ 305 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ--------------------LTRLTNHFGIDTEPTWAPDG-KS 305 (433)
T ss_pred CCccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC--------------------eEECccCCCCccceEECCCC-CE
Confidence 33457899999998876544 33 366665432 11 23334455556788999998 66
Q ss_pred EEEEe-CCCc--EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCCCCCCCCCCc
Q 039790 392 LASAS-LDGT--VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 392 LaSgs-~Dg~--IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg~~~~~~~~~ 466 (1395)
|+.++ .+|. |.+||+.++... .+..+.. ....++|+ |||++|+.+...++ .|.+||+.++
T Consensus 306 l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~-~~~~~~~S----pDG~~Ia~~~~~~~~~~I~v~d~~~g--------- 370 (433)
T PRK04922 306 IYFTSDRGGRPQIYRVAASGGSAE-RLTFQGN-YNARASVS----PDGKKIAMVHGSGGQYRIAVMDLSTG--------- 370 (433)
T ss_pred EEEEECCCCCceEEEEECCCCCeE-EeecCCC-CccCEEEC----CCCCEEEEEECCCCceeEEEEECCCC---------
Confidence 66555 4555 666677776543 3322333 45678999 99999987653333 6999999776
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC---CeEEEEEcCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK---NAIYAIHMDY 519 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D---g~I~iWdl~~ 519 (1395)
... .+. +... .....|++||++|+..+.+ +.|++|++..
T Consensus 371 ---~~~-~Lt-~~~~---------~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 371 ---SVR-TLT-PGSL---------DESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ---CeE-ECC-CCCC---------CCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 332 222 1111 1136899999988777653 4578887743
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=8.1e-10 Score=135.99 Aligned_cols=207 Identities=13% Similarity=0.147 Sum_probs=139.6
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECCC
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDG 280 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~Dg 280 (1395)
.+...+.+..+...+.+..|+|||++|++++.+ ..|++||+.++....+..+.+...+++| ++||+.|+ +.+.+|
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~-SpDG~~l~~~~s~~g 270 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSF-SPDGRRLALTLSRDG 270 (433)
T ss_pred CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceE-CCCCCEEEEEEeCCC
Confidence 344455666777789999999999999998743 4699999999877666666666778899 89998765 556666
Q ss_pred --cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCC
Q 039790 281 --RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 281 --tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~ 355 (1395)
.|++||+.++.. ..+..+.......+|+|++..++.++..+ .++.++... +.
T Consensus 271 ~~~Iy~~d~~~g~~---------------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~------- 327 (433)
T PRK04922 271 NPEIYVMDLGSRQL---------------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GS------- 327 (433)
T ss_pred CceEEEEECCCCCe---------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-------
Confidence 599999988761 11222333445789999999887776432 244444321 11
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCCceeEEecCCCCCCeeEEEEeecC
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG---TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg---~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
...+..+......++|+||| ++|+..+.++ .|.+||+.++... .+. +.. ......|+
T Consensus 328 -------------~~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~-~~~~p~~s--- 387 (433)
T PRK04922 328 -------------AERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGS-LDESPSFA--- 387 (433)
T ss_pred -------------eEEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCC-CCCCceEC---
Confidence 12222233445578999999 6766654433 5999999888754 443 322 45678999
Q ss_pred CCCCcEEEEEecCC--CeEEEEECCC
Q 039790 433 HPQHIVLITGGPLN--RELKIWASAE 456 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~D--g~I~IWDl~t 456 (1395)
|||++|+.+.... +.|.+|++..
T Consensus 388 -pdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 388 -PNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -CCCCEEEEEEecCCceEEEEEECCC
Confidence 9999888765332 3577777743
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.2e-09 Score=132.24 Aligned_cols=216 Identities=11% Similarity=0.105 Sum_probs=144.6
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC---CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV---DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
..|.+||.+++....+..|...|.+.+| ++||+.|+..+. +..|++||+.++.. ..+....
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~w-SpDG~~lay~s~~~g~~~i~~~dl~~g~~---------------~~l~~~~ 245 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRF-SPNRQEITYMSYANGRPRVYLLDLETGQR---------------ELVGNFP 245 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEE-CCCCCEEEEEEecCCCCEEEEEECCCCcE---------------EEeecCC
Confidence 4799999988777778889999999999 899999888764 46899999988761 1222334
Q ss_pred CCccEEEEeCCCCeEEEEEeC-C--eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 315 SVHPRVCWHPHKQEILMLAIG-N--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~-~--~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
..+....|+|+|..++.+... + .|++++... +. ...+..+.......+|+||| ++
T Consensus 246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-~~--------------------~~~Lt~~~~~~~~~~~spDG-~~ 303 (435)
T PRK05137 246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS-GT--------------------TTRLTDSPAIDTSPSYSPDG-SQ 303 (435)
T ss_pred CcccCcEECCCCCEEEEEEecCCCceEEEEECCC-Cc--------------------eEEccCCCCccCceeEcCCC-CE
Confidence 455678999999988766543 2 355555422 11 23344455667789999999 66
Q ss_pred EEEEeC-CC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC--CeEEEEECCCCCCCCCCCCc
Q 039790 392 LASASL-DG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN--RELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 392 LaSgs~-Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D--g~I~IWDl~tg~~~~~~~~~ 466 (1395)
|+..+. +| .|.+||+..+... .+..+.+ .+....|+ |||++|+.+.... ..|.+||+..+
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~-~~~~~~~S----pdG~~ia~~~~~~~~~~i~~~d~~~~--------- 368 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSNPR-RISFGGG-RYSTPVWS----PRGDLIAFTKQGGGQFSIGVMKPDGS--------- 368 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCCeE-EeecCCC-cccCeEEC----CCCCEEEEEEcCCCceEEEEEECCCC---------
Confidence 666553 33 5888898766543 3433344 57788999 9999998765222 36788887544
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC------CeEEEEEcCCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK------NAIYAIHMDYG 520 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D------g~I~iWdl~~g 520 (1395)
..+.+.. ... .....|++||++|+..+.+ ..|+++++..+
T Consensus 369 ----~~~~lt~-~~~---------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 369 ----GERILTS-GFL---------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred ----ceEeccC-CCC---------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 1222221 111 1247899999988775542 35777777543
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.22 E-value=8.3e-09 Score=113.61 Aligned_cols=178 Identities=17% Similarity=0.309 Sum_probs=122.7
Q ss_pred CeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 238 GNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 238 G~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
..|.|||-... ++..+ ....+|.+|.+ ..+.|+..- .+.|+||...+.. +.+..+.+.....+
T Consensus 75 NkviIWDD~k~~~i~el-~f~~~I~~V~l---~r~riVvvl-~~~I~VytF~~n~----------k~l~~~et~~NPkG- 138 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL-SFNSEIKAVKL---RRDRIVVVL-ENKIYVYTFPDNP----------KLLHVIETRSNPKG- 138 (346)
T ss_pred ceEEEEecccCcEEEEE-EeccceeeEEE---cCCeEEEEe-cCeEEEEEcCCCh----------hheeeeecccCCCc-
Confidence 47999994444 33333 35678999999 345666655 4689999998543 12233333332222
Q ss_pred ccEEEEeCCCC-eEEE-EEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 317 HPRVCWHPHKQ-EILM-LAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 317 v~~v~~sp~~~-~lla-~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
-++.+|... .+++ -|. .|.+.+.+......+ ....+..|...|.|++.+.+| .++|
T Consensus 139 --lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~------------------~p~~I~AH~s~Iacv~Ln~~G-t~vA 197 (346)
T KOG2111|consen 139 --LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN------------------APSIINAHDSDIACVALNLQG-TLVA 197 (346)
T ss_pred --eEeecCCCCceEEEcCCCccceEEEEEhhhcCcC------------------CceEEEcccCceeEEEEcCCc-cEEE
Confidence 233334332 2222 222 345555555432211 246678899999999999999 8999
Q ss_pred EEeCCCc-EEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 394 SASLDGT-VKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 394 Sgs~Dg~-IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|+|..|+ |||||..+|..+..++ |-....|++++|| |+..+|++++ +-|+|+||.++..
T Consensus 198 TaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS----p~~s~LavsS-dKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 198 TASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS----PNSSWLAVSS-DKGTLHIFSLRDT 258 (346)
T ss_pred EeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC----CCccEEEEEc-CCCeEEEEEeecC
Confidence 9999998 8999999999999987 4333479999999 9999999865 8999999999764
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.20 E-value=5.3e-08 Score=116.51 Aligned_cols=262 Identities=12% Similarity=0.100 Sum_probs=148.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFI 284 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~I 284 (1395)
+.+.++......-..+.|++||+++++++.||.|.+||+.+++ +..+.. ...-.++++ ++||+++++++ .++.|.|
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~-s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAV-SPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE---TTTEEEEEEEETTEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEE-cCCCCEEEEEecCCCceeE
Confidence 4455555443333456799999999999999999999999985 445543 345678999 89999888665 6899999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecC----CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILAD----GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~----~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+|..+.+ .+..+..... ....+..+..++.+..+++.-. .+.+..++.......
T Consensus 105 ~D~~tle-----------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~---------- 163 (369)
T PF02239_consen 105 IDAETLE-----------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL---------- 163 (369)
T ss_dssp EETTT-------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE----------
T ss_pred ecccccc-----------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc----------
Confidence 9999876 2222222111 2234445666777775555544 477777775443110
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC----CCCCCeeEEEEeecCCCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP----YDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~----h~~~~V~sV~fs~~~~pd 435 (1395)
............+..|+|++..+++....+..|-++|..+++.+..+.. |.+ ++..+- ||.
T Consensus 164 ---------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~-~~~~~p-----hp~ 228 (369)
T PF02239_consen 164 ---------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPG-PGANFP-----HPG 228 (369)
T ss_dssp ---------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEET-TEEEEE-----ETT
T ss_pred ---------ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccc-cccccc-----CCC
Confidence 1122234557788999999843445556678999999999987776542 322 222221 233
Q ss_pred C-cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE----eCCC
Q 039790 436 H-IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN----AKKN 510 (1395)
Q Consensus 436 g-~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg----s~Dg 510 (1395)
. ....+.+..+..+-+...... ...+...|+.++++...+... .+..+|++.+|... ...+
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v----~v~d~~~wkvv~~I~~~G~gl----------Fi~thP~s~~vwvd~~~~~~~~ 294 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPV----SVHDDYAWKVVKTIPTQGGGL----------FIKTHPDSRYVWVDTFLNPDAD 294 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TT----T-STTTBTSEEEEEE-SSSS------------EE--TT-SEEEEE-TT-SSHT
T ss_pred cceEEeeccccceecccccCCcc----ccchhhcCeEEEEEECCCCcc----------eeecCCCCccEEeeccCCCCCc
Confidence 2 222232222222222222111 112335679999999876542 26779999999988 4568
Q ss_pred eEEEEEcCCC
Q 039790 511 AIYAIHMDYG 520 (1395)
Q Consensus 511 ~I~iWdl~~g 520 (1395)
.|.++|..+.
T Consensus 295 ~v~viD~~tl 304 (369)
T PF02239_consen 295 TVQVIDKKTL 304 (369)
T ss_dssp -EEEEECCGT
T ss_pred eEEEEECcCc
Confidence 8999998763
No 219
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.20 E-value=4.9e-09 Score=117.41 Aligned_cols=241 Identities=13% Similarity=0.166 Sum_probs=164.8
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEeccCCCCeEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALR-SLLRGHTQRVTDMAFFAEDVHLLASASVDG--RFFIWNITEGPD 292 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~-~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~ 292 (1395)
...+..+.|..+...|..|+.|| .++|+...-.. .........|.-+-| ...++|..+.+. .+++++++.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLF---SSSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLF---SSSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeec---ccceeEEEecCCCceEEEEEcccCce
Confidence 34566677999999999999998 46787765322 111122234666667 345665555543 488999887651
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
+ |-.++ ...+.+|.++. ..++++-.+.|+++|.....- ..-+...
T Consensus 81 I------------Ce~~f---pt~IL~VrmNr---~RLvV~Lee~IyIydI~~Mkl-----------------LhTI~t~ 125 (391)
T KOG2110|consen 81 I------------CEIFF---PTSILAVRMNR---KRLVVCLEESIYIYDIKDMKL-----------------LHTIETT 125 (391)
T ss_pred E------------EEEec---CCceEEEEEcc---ceEEEEEcccEEEEeccccee-----------------ehhhhcc
Confidence 1 11111 22344555543 234555556688888865321 1112233
Q ss_pred cccCCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe-E
Q 039790 373 GKHDGEITELSMCQWLTTRLASAS--LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE-L 449 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs--~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~-I 449 (1395)
..+...+.+++++..+ .+||--+ ..|.|.|||+.+-+++.++..|++ .+-+++|+ ++|.+|++++ ..|+ |
T Consensus 126 ~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs----~~G~llATAS-eKGTVI 198 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG-PLAALAFS----PDGTLLATAS-EKGTVI 198 (391)
T ss_pred CCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccceeeeEEEecCC-ceeEEEEC----CCCCEEEEec-cCceEE
Confidence 3455667777777766 5776533 358899999999999999999998 99999999 9999999976 6776 5
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|||++.+| ..+..|+-... +.-...++|++|+.+|++.+..++|.||.++.-.
T Consensus 199 RVf~v~~G------------~kl~eFRRG~~-------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 199 RVFSVPEG------------QKLYEFRRGTY-------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEcCCc------------cEeeeeeCCce-------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999988 77776653222 1223479999999999999999999999998744
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2e-09 Score=132.59 Aligned_cols=209 Identities=14% Similarity=0.151 Sum_probs=144.4
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEc---CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECC
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLK---LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVD 279 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~---DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~D 279 (1395)
..+...+.+..|...+.+..|+|||+.|++.+. +..|++||+.++....+..+.+.+.+.+| ++||+.|+ +.+.+
T Consensus 189 ~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~-SPDG~~la~~~~~~ 267 (435)
T PRK05137 189 QDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRF-SPDGRKVVMSLSQG 267 (435)
T ss_pred CCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEE-CCCCCEEEEEEecC
Confidence 345555667788889999999999999999864 46899999999987777778888889999 89998765 55666
Q ss_pred Cc--EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccC
Q 039790 280 GR--FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 280 gt--V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~ 354 (1395)
|. |++||+.++.. ..+..+........|+|++..++.++..+ .+++++... +.
T Consensus 268 g~~~Iy~~d~~~~~~---------------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~~------ 325 (435)
T PRK05137 268 GNTDIYTMDLRSGTT---------------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-SN------ 325 (435)
T ss_pred CCceEEEEECCCCce---------------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-CC------
Confidence 65 77889887651 12233344556789999999887766432 355555321 11
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeec
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
...+..+.+.+....|+||| ++|+..+.+ ..|.+||+..+. .+.+.. .. .+..+.|+
T Consensus 326 --------------~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~-~~~~p~~s-- 385 (435)
T PRK05137 326 --------------PRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GF-LVEGPTWA-- 385 (435)
T ss_pred --------------eEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCc-eEeccC-CC-CCCCCeEC--
Confidence 22232234556778999999 677665543 358888975553 344432 22 57789999
Q ss_pred CCCCCcEEEEEecCC-----CeEEEEECCCC
Q 039790 432 PHPQHIVLITGGPLN-----RELKIWASAEE 457 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~D-----g~I~IWDl~tg 457 (1395)
|||++|+..+... ..|.++|+..+
T Consensus 386 --pDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 386 --PNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred --CCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 9999988765333 25777777554
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.5e-09 Score=133.23 Aligned_cols=204 Identities=15% Similarity=0.135 Sum_probs=133.7
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECCCc
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDGR 281 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~Dgt 281 (1395)
+.....+..+...+.+.+|+|||+.|++.+.+ ..|.+||+.++....+....+.+.+.+| ++||+.|+ +.+.+|.
T Consensus 185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~-SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAW-SPDGRTLAVALSRDGN 263 (427)
T ss_pred CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEE-CCCCCEEEEEEccCCC
Confidence 33444555677889999999999999988753 4599999999876666656667788999 89998876 5677887
Q ss_pred EEEEECC--CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-Ce--EEEEEcCCCCccccccCCC
Q 039790 282 FFIWNIT--EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NR--ILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 282 V~IWdl~--tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~--ii~~d~~~~~~~~~~s~~~ 356 (1395)
..||.+. .+. +..+..+........|+|++..++.++.. +. ++.++... +.
T Consensus 264 ~~Iy~~d~~~~~---------------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~-g~-------- 319 (427)
T PRK02889 264 SQIYTVNADGSG---------------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG-GA-------- 319 (427)
T ss_pred ceEEEEECCCCC---------------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC-Cc--------
Confidence 6666553 332 11222333445568899999988776643 23 33332211 11
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG---TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg---~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
...+..+.......+|+||| ++|+..+.++ .|.+||+.++... .+..+ . ....+.|+
T Consensus 320 ------------~~~lt~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~-~~~~p~~s---- 379 (427)
T PRK02889 320 ------------AQRVTFTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-T-RDESPSFA---- 379 (427)
T ss_pred ------------eEEEecCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeE-EccCC-C-CccCceEC----
Confidence 11111122334568899999 7777766554 6999999888754 33322 2 45788999
Q ss_pred CCCcEEEEEecCCCe--EEEEEC
Q 039790 434 PQHIVLITGGPLNRE--LKIWAS 454 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~--I~IWDl 454 (1395)
|||++|+.++...|. +.+.++
T Consensus 380 pdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 380 PNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCCCEEEEEEecCCCEEEEEEEC
Confidence 999999887744443 344444
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.9e-09 Score=132.45 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=134.5
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
..|.+||........+..+...+.+.+| ++||+.|+..+.+ ..|++||+.++. ...+ ....
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~w-SPDG~~la~~s~~~~~~~I~~~dl~~g~--------------~~~l-~~~~ 239 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAW-SPDGTKLAYVSFESKKPVVYVHDLATGR--------------RRVV-ANFK 239 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceE-cCCCCEEEEEEccCCCcEEEEEECCCCC--------------EEEe-ecCC
Confidence 4677888866666667778889999999 8999999887753 359999999876 1111 1222
Q ss_pred CCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
.......|+|++..++.+.. ++...+|.....+. ....+..+.+.+....|+||| ++|+
T Consensus 240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-------------------~~~~lt~~~~~~~~~~wSpDG-~~l~ 299 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-------------------GLRRLTQSSGIDTEPFFSPDG-RSIY 299 (427)
T ss_pred CCccceEECCCCCEEEEEEccCCCceEEEEECCCC-------------------CcEECCCCCCCCcCeEEcCCC-CEEE
Confidence 34457899999998876544 44333322211110 023344455556778999999 5655
Q ss_pred EEe-CCCcEEEEeC--CCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCCCCCCCCCCccc
Q 039790 394 SAS-LDGTVKIWDD--RKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 394 Sgs-~Dg~IrIWDl--~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
..+ .+|...||.+ .++.. ..+..+.. ......|+ |||++|+.++..++ .|.+||+.++
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~-~~~~~~~S----pDG~~Ia~~s~~~g~~~I~v~d~~~g----------- 362 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAA-QRVTFTGS-YNTSPRIS----PDGKLLAYISRVGGAFKLYVQDLATG----------- 362 (427)
T ss_pred EEecCCCCcEEEEEECCCCce-EEEecCCC-CcCceEEC----CCCCEEEEEEccCCcEEEEEEECCCC-----------
Confidence 444 4567777754 44443 22222222 45578999 99999987662322 6999999876
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC---eEEEEEc
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN---AIYAIHM 517 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg---~I~iWdl 517 (1395)
... .+.... . .....|++||++|+..+.++ .+++.++
T Consensus 363 -~~~-~lt~~~-~---------~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 363 -QVT-ALTDTT-R---------DESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred -CeE-EccCCC-C---------ccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 322 222111 1 12378999999988877544 2455454
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=2.9e-09 Score=124.26 Aligned_cols=251 Identities=13% Similarity=0.156 Sum_probs=168.0
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYI-CYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~L-asGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..|..|. +....+.+.+++||+|+ |+|.+.-.|++||+..-.+..-++-...|..+...+.|-..++--..|.+|-+.
T Consensus 43 eLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 43 ELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 3444443 67788899999999985 677888999999998654443333344555555445565556666677777665
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
.--... ..++ -......++++.-...++++|.+..+++++.....-
T Consensus 122 ak~G~h-------------y~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----------------- 167 (703)
T KOG2321|consen 122 AKYGRH-------------YRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----------------- 167 (703)
T ss_pred hhcCee-------------eeee----cCcCCccccccCCCccEEEeecCcceEEEEcccccc-----------------
Confidence 433111 0111 112234577887778899999999999998744211
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC------CCC----CCeeEEEEeecCCCC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP------YDG----HPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~------h~~----~~V~sV~fs~~~~pd 435 (1395)
+.-+....+.+++|..++.+ .+|++|+.||.|.+||.|....+.++.. |.+ ..|+++.|+ -+
T Consensus 168 ---L~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~----d~ 239 (703)
T KOG2321|consen 168 ---LNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR----DD 239 (703)
T ss_pred ---ccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec----CC
Confidence 23344455789999999988 7999999999999999998877766652 222 149999998 66
Q ss_pred CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC--CCEEEEEeCCCeEE
Q 039790 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA--GLFLLANAKKNAIY 513 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d--g~~LaSgs~Dg~I~ 513 (1395)
|-.+++| ..+|.|.|||+++. +.+. .+.|..... ...+.|-+. +..|++. +...++
T Consensus 240 gL~~aVG-ts~G~v~iyDLRa~------------~pl~-~kdh~~e~p-------i~~l~~~~~~~q~~v~S~-Dk~~~k 297 (703)
T KOG2321|consen 240 GLHVAVG-TSTGSVLIYDLRAS------------KPLL-VKDHGYELP-------IKKLDWQDTDQQNKVVSM-DKRILK 297 (703)
T ss_pred ceeEEee-ccCCcEEEEEcccC------------Ccee-ecccCCccc-------eeeecccccCCCceEEec-chHHhh
Confidence 8778775 59999999999987 4333 233332211 112444332 4455544 456799
Q ss_pred EEEcCCCCC
Q 039790 514 AIHMDYGPN 522 (1395)
Q Consensus 514 iWdl~~g~~ 522 (1395)
|||-.+|+.
T Consensus 298 iWd~~~Gk~ 306 (703)
T KOG2321|consen 298 IWDECTGKP 306 (703)
T ss_pred hcccccCCc
Confidence 999988864
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.18 E-value=1.5e-09 Score=118.32 Aligned_cols=112 Identities=20% Similarity=0.345 Sum_probs=87.9
Q ss_pred cCCCeEEEEEecCCCcEEEE--EeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeEE
Q 039790 375 HDGEITELSMCQWLTTRLAS--ASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNRELK 450 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaS--gs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I~ 450 (1395)
..+.|.+++|+|+| ..|+. |..++.|.|||++ ++.+..+. .. .+..|.|+ |+|++|+++|. ..|.|.
T Consensus 58 ~~~~I~~~~WsP~g-~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~-~~n~i~ws----P~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 58 KEGPIHDVAWSPNG-NEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQ-PRNTISWS----PDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred CCCceEEEEECcCC-CEEEEEEccCCcccEEEcCc-ccEeEeec--CC-CceEEEEC----CCCCEEEEEEccCCCcEEE
Confidence 34579999999999 55443 4467899999996 77777775 33 68899999 99999999873 346899
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC------CCeEEEEEcC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK------KNAIYAIHMD 518 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~------Dg~I~iWdl~ 518 (1395)
+||+++. +++.++.... ...+.|+|||++|+++.. |+.++||++.
T Consensus 129 ~wd~~~~------------~~i~~~~~~~-----------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 129 FWDVRKK------------KKISTFEHSD-----------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEECCCC------------EEeeccccCc-----------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9999877 7776665322 125899999999999874 7889999985
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.13 E-value=4.5e-10 Score=130.15 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=48.9
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
-+...|++||||| +||++|+.|..|.||.+..++.+..-.||+. ||..|+|.
T Consensus 332 FGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkS-WVs~VaFD 383 (636)
T KOG2394|consen 332 FGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKS-WVSVVAFD 383 (636)
T ss_pred ccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEecccccc-ceeeEeec
Confidence 3568999999999 8999999999999999999999999999998 99999997
No 226
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.13 E-value=3.6e-09 Score=115.32 Aligned_cols=147 Identities=15% Similarity=0.257 Sum_probs=104.6
Q ss_pred EEEEecCCCEEEEEEc----------CCeEEEEEC--CCCceEEec-cCCCCeEEEEEeeCCCCEEEEE--ECCCcEEEE
Q 039790 221 GRQIAVNRNYICYGLK----------LGNIRILNI--ITALRSLLR-GHTQRVTDMAFFAEDVHLLASA--SVDGRFFIW 285 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~----------DG~IrIWd~--~~~~~~~l~-~H~~~V~slaf~s~dg~~LaSg--s~DgtV~IW 285 (1395)
.+.|+++|++|+.-.. -|...||.+ .......+. ...+.|.+++| +|+|+.|+.+ ..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~W-sP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAW-SPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEE-CcCCCEEEEEEccCCcccEEE
Confidence 4568888887765433 133445544 333333332 23457999999 8888886554 456789999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|++ ++ .
T Consensus 89 d~~-~~--------------~----------------------------------------------------------- 94 (194)
T PF08662_consen 89 DVK-GK--------------K----------------------------------------------------------- 94 (194)
T ss_pred cCc-cc--------------E-----------------------------------------------------------
Confidence 986 22 0
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
+..+ +...++.|.|+|+| ++|++|+.+ |.|.|||+++.+.+.++. |. .++.++|+ |||++|+++
T Consensus 95 ---i~~~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~--~~t~~~Ws----PdGr~~~ta 161 (194)
T PF08662_consen 95 ---IFSF--GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS--DATDVEWS----PDGRYLATA 161 (194)
T ss_pred ---eEee--cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeeccc-cC--cEEEEEEc----CCCCEEEEE
Confidence 1111 23466789999999 788888754 669999999999888876 43 47999999 999999998
Q ss_pred ecC-----CCeEEEEECC
Q 039790 443 GPL-----NRELKIWASA 455 (1395)
Q Consensus 443 Gs~-----Dg~I~IWDl~ 455 (1395)
.+. |+.++||++.
T Consensus 162 ~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeccceeccccEEEEEec
Confidence 753 8899999985
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=2.9e-09 Score=117.63 Aligned_cols=273 Identities=12% Similarity=0.195 Sum_probs=175.9
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC------ceEEeccCC------------CCeEEEEEeeC-CCCEEEE
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA------LRSLLRGHT------------QRVTDMAFFAE-DVHLLAS 275 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~------~~~~l~~H~------------~~V~slaf~s~-dg~~LaS 275 (1395)
..+-|.+|.|...|.+||+|.++|.|.+|.-... -...+..|. ..|..+.|+.+ +...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3467889999999999999999999999965432 123444553 46888999543 3346777
Q ss_pred EECCCcEEEEECCCCCCCCCC----cccccc-----------------eEEEEEEe-cCCCCCccEEEEeCCCCeEEEEE
Q 039790 276 ASVDGRFFIWNITEGPDEEDK----PQILGK-----------------IVVAIQIL-ADGDSVHPRVCWHPHKQEILMLA 333 (1395)
Q Consensus 276 gs~DgtV~IWdl~tg~~~~~~----~~~~~~-----------------~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g 333 (1395)
.+.|.+|++|.+......... ...... ...+.+++ ..|...+.++.++.++. .+.++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEeec
Confidence 888999999999875422200 000000 00111222 23556677888888875 45556
Q ss_pred eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 334 IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH-----DGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 334 ~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h-----~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
.+=.|..|...-.... |. +.-++.| ..-|++..|+|..-++|+-.+..|+||+-|+|.
T Consensus 183 DdLRINLWnlei~d~s--Fn---------------IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQS--FN---------------IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred cceeeeeccccccCCc--ee---------------EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 6666666655332211 10 1112222 345888999998778999999999999999995
Q ss_pred CceeE----EecCCCC-----------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEE
Q 039790 409 STPLA----VLRPYDG-----------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQ 473 (1395)
Q Consensus 409 g~~l~----tl~~h~~-----------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~ 473 (1395)
..+.- .|..... ..|..|.|+ .+|+|+++ - .--+|+|||+... .+.+.
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs----~sGryils-R-Dyltvk~wD~nme-----------~~pv~ 308 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFS----HSGRYILS-R-DYLTVKLWDLNME-----------AKPVE 308 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEc----cCCcEEEE-e-ccceeEEEecccc-----------CCcce
Confidence 43211 1110000 168899999 89999997 2 3489999999532 15666
Q ss_pred EEeccCcccccc-----ccccc-ceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 474 TLELKSSAELRL-----EDAFF-NQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 474 tl~~h~~~i~~~-----~~~~~-~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
++..|...-... .++.| .--++|+.++.++++|+..+.++++++..|..
T Consensus 309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 776664321110 11112 22578999999999999999999999877653
No 228
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=1.5e-09 Score=134.91 Aligned_cols=228 Identities=12% Similarity=0.090 Sum_probs=155.5
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 228 RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
+.++++|..-+.+++=+........+ .++|....+ ..+...++.++.+..+.+||...+..........--...+.
T Consensus 61 ~~~~v~~~~~~~v~~~~~~~~~~~~~---s~wi~g~~l-~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 61 SGKIVTCAKSDEVYVKEASNQIIERF---SDWIFGAKL-FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred cceEEEEEeecceeecchhhhhhhhc---cccccccch-hhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 34566665544454433333222222 234444455 45667888888889999999987652111100000000011
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
. .+.++++.-++.++..-+.++.|....... -..+.||.+.|.++.|+-|
T Consensus 137 ~----------~~g~s~~~~~i~~gsv~~~iivW~~~~dn~--------------------p~~l~GHeG~iF~i~~s~d 186 (967)
T KOG0974|consen 137 L----------IIGDSAEELYIASGSVFGEIIVWKPHEDNK--------------------PIRLKGHEGSIFSIVTSLD 186 (967)
T ss_pred E----------EEeccCcEEEEEeccccccEEEEeccccCC--------------------cceecccCCceEEEEEccC
Confidence 1 122233333566666778888887642111 1256789999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeE-EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
| +++++.|.|.++|+|++.+++.+. +.-+|.. .|+.++|. |+ .++++| .|.+.++|+...
T Consensus 187 g-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~----~n--~i~t~g-edctcrvW~~~~---------- 247 (967)
T KOG0974|consen 187 G-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFL----PN--RIITVG-EDCTCRVWGVNG---------- 247 (967)
T ss_pred C-cEEEEEecCcceeeeecccccccCcccccccc-eeEEEEec----cc--eeEEec-cceEEEEEeccc----------
Confidence 8 899999999999999999987766 7778998 99999998 66 888877 999999997643
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..+..|+.|..... +.++.+.+..++++++.|+.+++|++..
T Consensus 248 ---~~l~~y~~h~g~~i--------w~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 ---TQLEVYDEHSGKGI--------WKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ---ceehhhhhhhhcce--------eEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 44457777765422 3588889999999999999999999875
No 229
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.10 E-value=2.5e-09 Score=117.60 Aligned_cols=220 Identities=11% Similarity=0.137 Sum_probs=160.7
Q ss_pred CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC
Q 039790 256 HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG 335 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~ 335 (1395)
-..+|+|.+| +.|+..++.+.....|.||...... ......++..|+..++.|+|.|..++|+.++.+
T Consensus 9 ~~~pitchAw-n~drt~iAv~~~~~evhiy~~~~~~-----------~w~~~htls~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 9 LLEPITCHAW-NSDRTQIAVSPNNHEVHIYSMLGAD-----------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred ccCceeeeee-cCCCceEEeccCCceEEEEEecCCC-----------CceeceehhhhCcceeEEeecCCCCceeEccCC
Confidence 4568999999 8999999999999999999988655 223567788899999999999999999999999
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----e
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST----P 411 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~----~ 411 (1395)
+.-++|.....+. -++..++..|...+++|.|+|.. +.||+||.-+.|.||-++.-. .
T Consensus 77 rnayVw~~~~~~~-----------------WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 77 RNAYVWTQPSGGT-----------------WKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred CCccccccCCCCe-----------------eccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehh
Confidence 9988886533221 12234455588999999999998 899999999999999876532 2
Q ss_pred eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC--CCCCCCC----CcccccEEEEEeccCcccccc
Q 039790 412 LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE--EGWLLPS----DIESWKCTQTLELKSSAELRL 485 (1395)
Q Consensus 412 l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg--~~~~~~~----~~~~~~~l~tl~~h~~~i~~~ 485 (1395)
.+.-+.+.. .|++++|. |++-.|++ |+.|+..|||..--. +..--+. ...-+.++..+...
T Consensus 139 KhikkPirS-tv~sldWh----pnnVLlaa-Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~------- 205 (361)
T KOG1523|consen 139 KHIKKPIRS-TVTSLDWH----PNNVLLAA-GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS------- 205 (361)
T ss_pred hhhCCcccc-ceeeeecc----CCcceecc-cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-------
Confidence 223345555 89999997 88877776 559999999975211 0000000 00111222222222
Q ss_pred cccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 486 EDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 486 ~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+-+...+.|+++|..|+-.+.|..|.+-|....
T Consensus 206 --ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 206 --GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred --CCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 223456999999999999999999999987643
No 230
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=6.2e-10 Score=126.68 Aligned_cols=198 Identities=12% Similarity=0.048 Sum_probs=142.2
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
.++...++..|++++.||++|+|+ | |+ ...+.....|.+.|.++.|++||++
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~-~-Ps--------------------------~~t~l~e~~~~~eV~DL~FS~dgk~ 200 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWE-W-PS--------------------------MLTILEEIAHHAEVKDLDFSPDGKF 200 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEe-c-Cc--------------------------chhhhhhHhhcCccccceeCCCCcE
Confidence 467777889999999999999999 3 11 1334455578899999999999999
Q ss_pred EEEEEcCCeEEEEECCCC-ceEEe--ccCCCCeEEEEEeeCCC-----CEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 231 ICYGLKLGNIRILNIITA-LRSLL--RGHTQRVTDMAFFAEDV-----HLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~-~~~~l--~~H~~~V~slaf~s~dg-----~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
|++-+.| ..+||+++++ .+... .+-......+.| ..|+ .+++....-+.|+.||+......
T Consensus 201 lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------- 269 (398)
T KOG0771|consen 201 LASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQFPGGGVRLCDISLWSGS--------- 269 (398)
T ss_pred EEEecCC-ceEEEEeccCchhhhcCCcccchhhhhcee-cccCCCceEEEEEecCCCCceeEEEeeeeccc---------
Confidence 9999999 8999999998 23322 233445667788 6666 33444445567888877654310
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
.+......-.....+.++..+.+|.++.+++.++.+.+++....... ......|...|+.+
T Consensus 270 ~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~-------------------~~vk~aH~~~VT~l 330 (398)
T KOG0771|consen 270 NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL-------------------QYVKEAHLGFVTGL 330 (398)
T ss_pred cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee-------------------EeehhhheeeeeeE
Confidence 01111112223446789999999998888888888888877543321 33446799999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~ 407 (1395)
.|+||. +++++.+.|.++.|.-+.
T Consensus 331 tF~Pds-r~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 331 TFSPDS-RYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEcCCc-CcccccccCCceeEEEEe
Confidence 999998 899999999888887654
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.09 E-value=1.6e-08 Score=123.99 Aligned_cols=212 Identities=12% Similarity=0.105 Sum_probs=138.1
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
..|.++|...+....+..+...+.+.+| ++||++|+.++.+ ..|++||+.++.. .......
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~-Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------~~~~~~~ 233 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAW-SPDGQKLAYVSFESGKPEIYVQDLATGQR---------------EKVASFP 233 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccC-CCCCCEEEEEEcCCCCcEEEEEECCCCCE---------------EEeecCC
Confidence 4688889877666667778888999999 9999999988754 4799999988751 1112233
Q ss_pred CCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~ 391 (1395)
.....++|+|++..++.+...+ .++.|+.... . ...+..+........|++|| .+
T Consensus 234 ~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-~--------------------~~~l~~~~~~~~~~~~s~dg-~~ 291 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-Q--------------------LTRLTNGPGIDTEPSWSPDG-KS 291 (417)
T ss_pred CCccceEECCCCCEEEEEECCCCCccEEEEECCCC-C--------------------EEECCCCCCCCCCEEECCCC-CE
Confidence 4455689999998887665432 3555554221 1 22233344445577899998 66
Q ss_pred EEEEeC-CC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC---eEEEEECCCCCCCCCCCC
Q 039790 392 LASASL-DG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR---ELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 392 LaSgs~-Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg---~I~IWDl~tg~~~~~~~~ 465 (1395)
|+.++. ++ .|.+||+.+++.. .+..+.. .+..+.|+ |+|++|+.++ .++ .|.+||+.++
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~-~~~~~~~s----pdg~~i~~~~-~~~~~~~i~~~d~~~~-------- 356 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG-YNASPSWS----PDGDLIAFVH-REGGGFNIAVMDLDGG-------- 356 (417)
T ss_pred EEEEECCCCCceEEEEECCCCCEE-EeecCCC-CccCeEEC----CCCCEEEEEE-ccCCceEEEEEeCCCC--------
Confidence 655543 34 5888888777643 4443444 67889999 9999998876 554 7888888765
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC---eEEEEEc
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN---AIYAIHM 517 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg---~I~iWdl 517 (1395)
.. ..+.... .. ....|++||.+|+..+.++ .+++++.
T Consensus 357 ----~~-~~l~~~~-~~---------~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 357 ----GE-RVLTDTG-LD---------ESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ----Ce-EEccCCC-CC---------CCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 22 2222111 11 1257899999888877654 3444443
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=3.1e-09 Score=119.69 Aligned_cols=209 Identities=14% Similarity=0.157 Sum_probs=148.0
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECC--CcEEEEEC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVD--GRFFIWNI 287 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D--gtV~IWdl 287 (1395)
..+.|.+++.. | ..|++|-.+|.+.+|..+.+ .+..+..+ ..+..|.-+..+..++++||.. ..+.|||+
T Consensus 104 ~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 104 GTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeec
Confidence 34455554332 3 46778888999999999854 44455544 4566777655666788889998 88999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
...+.+. .++.+..=.+--.....++.+.|-+. ...|+++...+.+.+||.....+
T Consensus 181 e~~~qiw-----~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR----------------- 238 (412)
T KOG3881|consen 181 EQSKQIW-----SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR----------------- 238 (412)
T ss_pred ccceeee-----eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-----------------
Confidence 9864111 11110000000001122345666665 55666666777777777754332
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
++..|.-....|+++...|++ +++++|..-|.+..||++.++.+.. +++-.| .|++|... |.+++|++||
T Consensus 239 --PV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~h----p~~~~las~G- 309 (412)
T KOG3881|consen 239 --PVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCH----PTHPVLASCG- 309 (412)
T ss_pred --ceeEeccccCcceeeeecCCC-cEEEEecccchhheecccCceeeccccCCccC-CcceEEEc----CCCceEEeec-
Confidence 245555567889999999998 8999999999999999999988877 888888 99999997 9999999988
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.|+.|||+|+.+.
T Consensus 310 LDRyvRIhD~ktr 322 (412)
T KOG3881|consen 310 LDRYVRIHDIKTR 322 (412)
T ss_pred cceeEEEeecccc
Confidence 9999999999885
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=5.5e-09 Score=117.70 Aligned_cols=253 Identities=11% Similarity=0.070 Sum_probs=171.2
Q ss_pred CCCCEEEEEEecCCC--EEEEEEcCCeEEEEECCCCc-------eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 215 DPGLVLGRQIAVNRN--YICYGLKLGNIRILNIITAL-------RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 215 h~~~V~~va~Spdg~--~LasGs~DG~IrIWd~~~~~-------~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
....|..++|..++. .|..++.|..+..+.+.... .......+..|.+++. -...|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCCEEEEEecCCcEEEE
Confidence 335677777876653 34444466677777666542 2244556778888887 34578899999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
....+..- ...+..+. ....+..+.-++...+|++.|... .+.+|+... . ...|+....-.-
T Consensus 131 ~~k~~d~h-------ss~l~~la----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~-~-~qiw~aKNvpnD-- 195 (412)
T KOG3881|consen 131 HDKSGDLH-------SSKLIKLA----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ-S-KQIWSAKNVPND-- 195 (412)
T ss_pred eccCCccc-------cccceeee----cCCceeeeccCCCCCceEecCchhcccceeeeeccc-c-eeeeeccCCCCc--
Confidence 99966511 11111111 123445666677777888866544 344444433 2 223333221100
Q ss_pred cccccceEEEcccCCCeEEEEEecC--CCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQW--LTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspd--g~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.+. +. -.-+++++.|-+. . +.||+++.-+.||+||.+.+ +++..|..-.. +|+++... |+|.++
T Consensus 196 -~L~--Lr----VPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~----p~gn~I 262 (412)
T KOG3881|consen 196 -RLG--LR----VPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLT----PSGNFI 262 (412)
T ss_pred -ccc--ce----eeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccC-cceeeeec----CCCcEE
Confidence 000 00 1235678888776 4 79999999999999999976 78888886665 99999998 999999
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEE-EeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQT-LELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~t-l~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+++. .-+.+..||++.+ +.+.. |++..+.+.. +...+.+.+|++++-|..|||+|+.
T Consensus 263 y~gn-~~g~l~~FD~r~~------------kl~g~~~kg~tGsirs---------ih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 263 YTGN-TKGQLAKFDLRGG------------KLLGCGLKGITGSIRS---------IHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred EEec-ccchhheecccCc------------eeeccccCCccCCcce---------EEEcCCCceEEeeccceeEEEeecc
Confidence 9865 8899999999988 65554 6666666543 7778899999999999999999998
Q ss_pred CC
Q 039790 519 YG 520 (1395)
Q Consensus 519 ~g 520 (1395)
+.
T Consensus 321 tr 322 (412)
T KOG3881|consen 321 TR 322 (412)
T ss_pred cc
Confidence 73
No 234
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=1.6e-09 Score=128.81 Aligned_cols=259 Identities=18% Similarity=0.204 Sum_probs=176.3
Q ss_pred CEEEEEEecCC--CEEEEEEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 218 LVLGRQIAVNR--NYICYGLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 218 ~V~~va~Spdg--~~LasGs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
.|-.+.|++.. .+-++......-.||++... ....+.||+..|+++.|+..+...|++|+.|-.|..||+++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 45567787743 34444444455568998653 3457789999999999988888999999999999999999865
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..+..........+.|.|+.....+++...++.+.+|+.+..+.. +..
T Consensus 149 -------------~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~p-------------------l~s 196 (1081)
T KOG0309|consen 149 -------------RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTP-------------------LCS 196 (1081)
T ss_pred -------------cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcc-------------------eEE
Confidence 234444455566778999999999999999999999988665432 667
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc--EEEEEecCCCeE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI--VLITGGPLNREL 449 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~--~L~s~Gs~Dg~I 449 (1395)
+++|...|+.++|...-...+.+++.||+|++||......-....--...+|+.-.|. |-|. ++.-.- .+..+
T Consensus 197 ~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~----Pfg~g~~~mp~~-G~n~v 271 (1081)
T KOG0309|consen 197 LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL----PFGEGYCIMPMV-GGNMV 271 (1081)
T ss_pred ecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc----ccCceeEecccc-CCeee
Confidence 7789999999999876546899999999999999876532222111122367777776 5444 322211 23356
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccce---EEEE--eCCCCEEEEEeCCCeEEEEEcCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQ---VVAL--NRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~---~l~~--S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.+++.++...+.. .....+.+.+|.+|.+.+.. |... -+.+ ......|++-+.|..+++|-+..
T Consensus 272 ~~~~c~n~d~e~n--~~~~~~pVh~F~GH~D~V~e----FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 272 PQLRCENSDLEWN--VFDLNTPVHTFVGHDDVVLE----FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeccccchhhhhc--cccCCcceeeecCcchHHHH----HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 6665554311000 00134778999999877543 1100 0111 22235799999999999999865
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.4e-08 Score=120.24 Aligned_cols=194 Identities=11% Similarity=0.147 Sum_probs=147.1
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceE-Eec---cCCCCeEEEEEe-------------------eCCCCEEEEEECCCcE
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRS-LLR---GHTQRVTDMAFF-------------------AEDVHLLASASVDGRF 282 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~-~l~---~H~~~V~slaf~-------------------s~dg~~LaSgs~DgtV 282 (1395)
+.+.|+|+...||.+||||...+.++ .|. .-++..++..|. +.+...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45679999999999999999987543 222 123444555552 2344568888889999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEe-cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQIL-ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
.+|++..|+ + ...+. +.|.+.|.++.|+.+-..|..++.+..++.|.......
T Consensus 83 ~~ys~~~g~------------i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~------------- 136 (541)
T KOG4547|consen 83 LLYSVAGGE------------I-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI------------- 136 (541)
T ss_pred EEEEecCCe------------E-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-------------
Confidence 999999887 1 23333 67888999999999998999999888888887643211
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC-CCCcEEE
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH-PQHIVLI 440 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~-pdg~~L~ 440 (1395)
++.+......+.+++++||| ..|++++ +.|++||+.+++.+.+|.||.+ +|+++.|..... --|.+++
T Consensus 137 -------~~~~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 137 -------IRIWKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred -------eeeeccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceee
Confidence 44555667788999999998 7888876 6899999999999999999998 999999983211 1278888
Q ss_pred EEecCCCeEEEEECCC
Q 039790 441 TGGPLNRELKIWASAE 456 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~t 456 (1395)
++...+.-|.+|-+..
T Consensus 206 ssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 206 SSAAAERGITVWVVEK 221 (541)
T ss_pred eccccccceeEEEEEc
Confidence 8766777888997765
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.07 E-value=2.4e-10 Score=130.39 Aligned_cols=193 Identities=12% Similarity=0.174 Sum_probs=155.0
Q ss_pred eEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE
Q 039790 260 VTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL 339 (1395)
Q Consensus 260 V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii 339 (1395)
-+.+.| +.+|..|+.|+..|.|-.+|..++.. .+.-.-...|.++.|-... .+|+++-.+.++
T Consensus 132 PY~~~y-trnGrhlllgGrKGHlAa~Dw~t~~L---------------~~Ei~v~Etv~Dv~~LHne-q~~AVAQK~y~y 194 (545)
T KOG1272|consen 132 PYHLDY-TRNGRHLLLGGRKGHLAAFDWVTKKL---------------HFEINVMETVRDVTFLHNE-QFFAVAQKKYVY 194 (545)
T ss_pred Ceeeee-cCCccEEEecCCccceeeeeccccee---------------eeeeehhhhhhhhhhhcch-HHHHhhhhceEE
Confidence 456888 89999999999999999999998872 1111223345667775544 578888888888
Q ss_pred EEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC
Q 039790 340 KIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD 419 (1395)
Q Consensus 340 ~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~ 419 (1395)
++|...+. ++.+.. ...|..+.|-|.. .+|++++..|.++--|+.+|+.+..+..-.
T Consensus 195 vYD~~GtE---------------------lHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~ 251 (545)
T KOG1272|consen 195 VYDNNGTE---------------------LHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGA 251 (545)
T ss_pred EecCCCcE---------------------Eeehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccC
Confidence 88764322 444543 3578999999998 899999999999999999999999998777
Q ss_pred CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC
Q 039790 420 GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA 499 (1395)
Q Consensus 420 ~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d 499 (1395)
+ .+..++-+ |.+..+-++. .+|+|.+|..... ..+..+-.|.+.+. .+++.++
T Consensus 252 G-~~~vm~qN----P~NaVih~Gh-snGtVSlWSP~sk------------ePLvKiLcH~g~V~---------siAv~~~ 304 (545)
T KOG1272|consen 252 G-RTDVMKQN----PYNAVIHLGH-SNGTVSLWSPNSK------------EPLVKILCHRGPVS---------SIAVDRG 304 (545)
T ss_pred C-ccchhhcC----CccceEEEcC-CCceEEecCCCCc------------chHHHHHhcCCCcc---------eEEECCC
Confidence 7 88888888 8887777755 8999999998877 66666677777764 4999999
Q ss_pred CCEEEEEeCCCeEEEEEcCC
Q 039790 500 GLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 500 g~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|.|+++.+.|+.|+|||+..
T Consensus 305 G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 305 GRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred CcEEeecccccceeEeeecc
Confidence 99999999999999999976
No 237
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=6.4e-09 Score=115.73 Aligned_cols=210 Identities=16% Similarity=0.249 Sum_probs=144.5
Q ss_pred CCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCe
Q 039790 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNR 337 (1395)
Q Consensus 258 ~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ 337 (1395)
-.+..++| +++-..++++..|-.|++||-.... ...+.......+++++|.|.+...+++|...+
T Consensus 99 ~dlr~~aW-hqH~~~fava~nddvVriy~ksst~--------------pt~Lks~sQrnvtclawRPlsaselavgCr~g 163 (445)
T KOG2139|consen 99 IDLRGVAW-HQHIIAFAVATNDDVVRIYDKSSTC--------------PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG 163 (445)
T ss_pred cceeeEee-chhhhhhhhhccCcEEEEeccCCCC--------------CceecchhhcceeEEEeccCCcceeeeeecce
Confidence 35778899 5666778999999999999977622 12233445677899999999999999999999
Q ss_pred EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCceeEEec
Q 039790 338 ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL-DGTVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 338 ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~-Dg~IrIWDl~sg~~l~tl~ 416 (1395)
|.+|.......... .++. .......+....|| ..|+++.|.+|| ..|++++. |..|.|||..++.++....
T Consensus 164 IciW~~s~tln~~r-----~~~~-~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 164 ICIWSDSRTLNANR-----NIRM-MSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred eEEEEcCccccccc-----cccc-ccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccc
Confidence 99998765432110 0000 00001112333455 689999999998 78888775 5789999999987666553
Q ss_pred CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEE
Q 039790 417 PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVAL 496 (1395)
Q Consensus 417 ~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~ 496 (1395)
..-+ .++-+.|| |||.+|+++. -|+..++|.... .|.+.+-..+.+ . ++..+|
T Consensus 236 ~glg-g~slLkwS----Pdgd~lfaAt-~davfrlw~e~q-----------~wt~erw~lgsg-r---------vqtacW 288 (445)
T KOG2139|consen 236 KGLG-GFSLLKWS----PDGDVLFAAT-CDAVFRLWQENQ-----------SWTKERWILGSG-R---------VQTACW 288 (445)
T ss_pred cCCC-ceeeEEEc----CCCCEEEEec-ccceeeeehhcc-----------cceecceeccCC-c---------eeeeee
Confidence 2233 69999999 9999999876 899999996543 344444333333 2 346899
Q ss_pred eCCCCEEEEEe-CCCeEEEEEc
Q 039790 497 NRAGLFLLANA-KKNAIYAIHM 517 (1395)
Q Consensus 497 S~dg~~LaSgs-~Dg~I~iWdl 517 (1395)
+|+|++|+... ..-.||-..+
T Consensus 289 spcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred cCCCCEEEEEEcCCceEEEEee
Confidence 99998765544 4444444443
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=3.7e-08 Score=116.85 Aligned_cols=321 Identities=16% Similarity=0.195 Sum_probs=200.7
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCC----------------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITA----------------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~----------------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
....|+.|+....|||+|+.||.++|..+.+. .-+++.||.+.|.-+.| ..+...|-|...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW-Ne~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW-NENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe-ccccccccccCCCc
Confidence 55789999999999999999999999988752 12478899999999999 77788899999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEE-------EcCCCC----cc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKI-------DSNRVG----KG 349 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~-------d~~~~~----~~ 349 (1395)
.|.||-+-.|...+.. +.....+.|.+++|..+|..+..+-.+|.+++- |..... ..
T Consensus 94 lIiVWmlykgsW~EEM------------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~h 161 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEM------------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAH 161 (1189)
T ss_pred eEEEEeeecccHHHHH------------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccc
Confidence 9999999887621111 112334567788999999888777777666542 221110 01
Q ss_pred ccccCCC-------------------CC--ccCccccccceEEEcccCCCeEEEEEe--------cCCCcEEEEEeCCCc
Q 039790 350 ERFSAEE-------------------PL--KCPVDELINGVQLVGKHDGEITELSMC--------QWLTTRLASASLDGT 400 (1395)
Q Consensus 350 ~~~s~~~-------------------~~--~~~~~~~~~~~~~l~~h~~~V~slafs--------pdg~~~LaSgs~Dg~ 400 (1395)
..|+.+. .+ ++.......+...+......|-.+.|. ||. -.|+.+-..|.
T Consensus 162 v~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr 240 (1189)
T KOG2041|consen 162 VLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGR 240 (1189)
T ss_pred eeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCce
Confidence 1222221 11 111111111112222222335556663 344 48899999999
Q ss_pred EEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC---------CeEEEEECCCCCCCCCCCCccccc
Q 039790 401 VKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN---------RELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 401 IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D---------g~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
+.|-.-.+. .++-.-.| ..|....|+ ++|..|+++| .| +.|.+|..- | +
T Consensus 241 ~QiMR~eND~~Pvv~dtg---m~~vgakWn----h~G~vLAvcG-~~~da~~~~d~n~v~Fysp~-G------------~ 299 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDTG---MKIVGAKWN----HNGAVLAVCG-NDSDADEPTDSNKVHFYSPY-G------------H 299 (1189)
T ss_pred ehhhhhcCCCCCeEEecc---cEeecceec----CCCcEEEEcc-CcccccCccccceEEEeccc-h------------h
Confidence 888754433 33333223 378999999 9999999988 43 245555422 2 6
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCc
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDA 550 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~ 550 (1395)
.+.+|+..+..+.. ++|-..|..++- .-|+.||+-+++. .|...|-....++...+..
T Consensus 300 i~gtlkvpg~~It~---------lsWEg~gLriA~-AvdsfiyfanIRP---------~ykWgy~e~TvVy~y~~~e--- 357 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITG---------LSWEGTGLRIAI-AVDSFIYFANIRP---------EYKWGYIEETVVYVYQKEE--- 357 (1189)
T ss_pred heEEEecCCceeee---------eEEcCCceEEEE-EecceEEEEeecc---------cceEEEeeeEEEEEEccCC---
Confidence 77788877766543 888777766654 4588999988754 2555554444555555543
Q ss_pred CcCCCCeEEEEEcCCCceeeecccceEEecCCCCC-eecccCCCceE
Q 039790 551 SPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLEN-AELEKTDSNAT 596 (1395)
Q Consensus 551 ~~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~-l~~~~sd~~v~ 596 (1395)
.-...|.+||..+.+-.--....-.|+++..+. +-....|++++
T Consensus 358 --~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 358 --LPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred --CcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCC
Confidence 224579999988864221112223477777765 22223344443
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=2.9e-09 Score=132.47 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=126.1
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
+-++.+.-|+++|+--+.|.+|+..... -..+.||.+.|.++.| +.||.+++++++|+++|+|++.+.+..
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~~~~------- 210 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVT-SLDGRYIASVSDDRSIRLWPIDSREVL------- 210 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEE-ccCCcEEEEEecCcceeeeeccccccc-------
Confidence 3467788899999999999999988433 3358999999999999 999999999999999999999987610
Q ss_pred cceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 301 GKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 301 ~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
.....+|...|+
T Consensus 211 --------------------------------------------------------------------~~~~fgHsaRvw 222 (967)
T KOG0974|consen 211 --------------------------------------------------------------------GCTGFGHSARVW 222 (967)
T ss_pred --------------------------------------------------------------------CcccccccceeE
Confidence 001126999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.+.|.+. +++|++.|-+.++|+. .+..+.++++|.+..|+.++.. ++...++++| .|+.+++||+...
T Consensus 223 ~~~~~~n---~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~----~~~~~~vT~g-~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 223 ACCFLPN---RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVP----IGVIIKVTGG-NDSTLKLWDLNGR 290 (967)
T ss_pred EEEeccc---eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEc----CCceEEEeec-cCcchhhhhhhcc
Confidence 9999984 8999999999999964 4666779999998899999996 6666777766 9999999998654
No 240
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=1.3e-09 Score=126.15 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=124.7
Q ss_pred ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCe
Q 039790 249 LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQE 328 (1395)
Q Consensus 249 ~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ 328 (1395)
....|.||++.|+++.| +.+|.+|++|+.|-.+.|||.-..+..
T Consensus 42 lE~eL~GH~GCVN~LeW-n~dG~lL~SGSDD~r~ivWd~~~~Kll----------------------------------- 85 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEW-NADGELLASGSDDTRLIVWDPFEYKLL----------------------------------- 85 (758)
T ss_pred hhhhhccccceecceee-cCCCCEEeecCCcceEEeecchhccee-----------------------------------
Confidence 45678999999999999 899999999999999999998754410
Q ss_pred EEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCC
Q 039790 329 ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT-TRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 329 lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~-~~LaSgs~Dg~IrIWDl~ 407 (1395)
...-.||...|.++.|-|... .++++|..|..|++||+.
T Consensus 86 ----------------------------------------hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 86 ----------------------------------------HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred ----------------------------------------eeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 111236999999999988642 588999999999999997
Q ss_pred CC----------ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 408 KS----------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 408 sg----------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
.. ..++.+..|.. .|..++-. |++...+-+++.||+|+-+|++.. ..|-.....
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~-rVKria~~----p~~PhtfwsasEDGtirQyDiREp-----------h~c~p~~~~ 189 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTD-RVKRIATA----PNGPHTFWSASEDGTIRQYDIREP-----------HVCNPDEDC 189 (758)
T ss_pred cccccccccCccchhhhhhhhhh-hhhheecC----CCCCceEEEecCCcceeeecccCC-----------ccCCccccc
Confidence 41 34556667876 89999988 888544444459999999999864 011111111
Q ss_pred cCcccccccccccceEEEEeCC-CCEEEEEeCCCeEEEEEcC
Q 039790 478 KSSAELRLEDAFFNQVVALNRA-GLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~ 518 (1395)
+.....-...-.--.++.++|. ..+|+.|+.|-..++||..
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1100000000000124666654 5688999999999999964
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.04 E-value=3e-08 Score=121.62 Aligned_cols=203 Identities=16% Similarity=0.175 Sum_probs=137.0
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECCC-
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDG- 280 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~Dg- 280 (1395)
+...+.+..+...+....|++||++|++++.+ ..|++||+.++....+..+.+.+.+++| ++||+.|+ +.+.++
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~-spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAF-SPDGSKLAVSLSKDGN 257 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEE-CCCCCEEEEEECCCCC
Confidence 34445566666778899999999999998754 4799999999876666667777888999 89998776 444444
Q ss_pred -cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCC
Q 039790 281 -RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 281 -tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~ 356 (1395)
.|++||+.++.. ..+..+........|++++..++.++..+ .++.++... +.
T Consensus 258 ~~i~~~d~~~~~~---------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-------- 313 (417)
T TIGR02800 258 PDIYVMDLDGKQL---------------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-------- 313 (417)
T ss_pred ccEEEEECCCCCE---------------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC--------
Confidence 589999987651 11122233344678999998887766532 355554321 11
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG---TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg---~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
...+..+...+..+.|+|+| .+|+.++.++ .|.+||+.++.. ..+.... ......|+
T Consensus 314 ------------~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~--~~~~p~~s---- 373 (417)
T TIGR02800 314 ------------VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG--LDESPSFA---- 373 (417)
T ss_pred ------------EEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-EEccCCC--CCCCceEC----
Confidence 22333355667889999998 7777777765 789999988653 3333222 34567898
Q ss_pred CCCcEEEEEecCCC--eEEEEE
Q 039790 434 PQHIVLITGGPLNR--ELKIWA 453 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg--~I~IWD 453 (1395)
|||++|+.+...++ .+.+.+
T Consensus 374 pdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 374 PNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CCCCEEEEEEeCCCcEEEEEEE
Confidence 99999888764443 344444
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.04 E-value=8.6e-08 Score=114.75 Aligned_cols=322 Identities=11% Similarity=0.089 Sum_probs=173.8
Q ss_pred CEE-EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 229 NYI-CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 229 ~~L-asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+++ ++-..+|.|.|+|..+.+ +..+......-..+.| ++||++++.++.||.|.+||+.+++ .+..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~-s~Dgr~~yv~~rdg~vsviD~~~~~-----------~v~~ 73 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF-SPDGRYLYVANRDGTVSVIDLATGK-----------VVAT 73 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE--TT-SSEEEEEETTSEEEEEETTSSS-----------EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe-cCCCCEEEEEcCCCeEEEEECCccc-----------EEEE
Confidence 344 445678999999999875 5566544433345667 9999999999999999999999987 2222
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-------ccCCC
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-------KHDGE 378 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-------~h~~~ 378 (1395)
+ ..+ .....++++++|+++++++. .+.+.++|...... ++.+. .....
T Consensus 74 i---~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~--------------------v~~I~~~~~~~~~~~~R 129 (369)
T PF02239_consen 74 I---KVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP--------------------VKTIPTGGMPVDGPESR 129 (369)
T ss_dssp E---E-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E--------------------EEEEE--EE-TTTS---
T ss_pred E---ecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccc--------------------eeecccccccccccCCC
Confidence 2 222 23457999999999988875 56677777644321 22221 12346
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
+..+..++....++++.-.-+.|-+-|......+..-.-+.+.......|+ |+++|++++...++.|-++|..++
T Consensus 130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d----pdgry~~va~~~sn~i~viD~~~~- 204 (369)
T PF02239_consen 130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD----PDGRYFLVAANGSNKIAVIDTKTG- 204 (369)
T ss_dssp EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-----TTSSEEEEEEGGGTEEEEEETTTT-
T ss_pred ceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC----cccceeeecccccceeEEEeeccc-
Confidence 778888888733444444458888889877654432221222368889999 999998887667889999999887
Q ss_pred CCCCCCCcccccEEEEEeccCcc----cccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeee
Q 039790 459 GWLLPSDIESWKCTQTLELKSSA----ELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEF 534 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~----i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f 534 (1395)
+.+..+...... ........+..+......+...++.-....+.+|+.. .++.+...
T Consensus 205 -----------k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~--------~wkvv~~I 265 (369)
T PF02239_consen 205 -----------KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY--------AWKVVKTI 265 (369)
T ss_dssp -----------EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT--------BTSEEEEE
T ss_pred -----------eEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh--------cCeEEEEE
Confidence 666655432211 1000000000011112222222222222223333322 23344444
Q ss_pred eccccEEEEecCCCCc--------CcCCCCeEEEEEcCCCceeee-c---ccceEEecCCCCC---eecccCCCceEEEe
Q 039790 535 TVTMPILSLTGTTTDA--------SPDGEHIVQIYCVQTQAIQQY-A---LDLSQCLPPPLEN---AELEKTDSNATRAF 599 (1395)
Q Consensus 535 ~~~~~ils~~~~~~d~--------~~s~dg~V~lWdv~t~~i~~~-~---~~~~~cl~~s~d~---l~~~~sd~~v~~iW 599 (1395)
.....-+.+.-+. +. +..+...|.|+|+++.++... . ......+.|+.|+ +.+....++-+.+|
T Consensus 266 ~~~G~glFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGGLFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS--EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred ECCCCcceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 3332212111111 11 113467899999999866422 1 1125566777776 33333333256699
Q ss_pred ecCCCCcceeec
Q 039790 600 DVANPDGSASLE 611 (1395)
Q Consensus 600 D~~tg~~~~~l~ 611 (1395)
|..|.+..+.+.
T Consensus 345 D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 345 DAKTLKEKKRIP 356 (369)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCcEEEEEEE
Confidence 999999888776
No 243
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.03 E-value=3.1e-08 Score=109.93 Aligned_cols=226 Identities=15% Similarity=0.166 Sum_probs=157.3
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
+.+.+.+.|.++|+|- +--. |+.-+ .|. ..-...++++.+.++...|++|-.+|
T Consensus 37 ~gv~~~s~drtvrv~l-krds------------------~q~wp-----sI~--~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWL-KRDS------------------GQYWP-----SIY--HYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred CCeEEccccceeeeEE-eccc------------------cccCc-----hhh--hhCCCCceEeeeeccceEEEEEEecc
Confidence 6789999999999997 2111 11111 011 11246788899999999999999999
Q ss_pred eEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccc----ccceEEEEEE
Q 039790 239 NIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQI----LGKIVVAIQI 309 (1395)
Q Consensus 239 ~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~----~~~~i~~l~~ 309 (1395)
++.-+.+... ..+....|..+|..+-| +....++++++.|..+..--.+.+..+..+... .........+
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if-~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVF-SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAF 169 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEe-cCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEE
Confidence 9998877653 34566789999999999 788899999999988776666665522211000 0000111222
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
.+++.+.++.+.+.+.+ ...+..+.+|.+.+++++|.+..
T Consensus 170 vGd~~gqvt~lr~~~~~---------------------------------------~~~i~~~~~h~~~~~~l~Wd~~~- 209 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNG---------------------------------------CQLITTFNGHTGEVTCLKWDPGQ- 209 (404)
T ss_pred ecccccceEEEEEeecC---------------------------------------CceEEEEcCcccceEEEEEcCCC-
Confidence 33333333222222211 11256788999999999999977
Q ss_pred cEEEEEeCCCcEEEEeCCCCc-eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 390 TRLASASLDGTVKIWDDRKST-PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~-~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.+|.+|..|..|.+||+--++ ....+.+|.+ .|..+.+. ..-+.|++++ .||.|.+||++..
T Consensus 210 ~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~----~~t~~l~S~~-edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 210 RLLFSGASDHSVIMWDIGGRKGTAYELQGHND-KVQALSYA----QHTRQLISCG-EDGGIVVWNMNVK 272 (404)
T ss_pred cEEEeccccCceEEEeccCCcceeeeeccchh-hhhhhhhh----hhheeeeecc-CCCeEEEEeccce
Confidence 899999999999999987653 3457778887 89999987 6677888877 9999999999765
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=6.8e-08 Score=119.04 Aligned_cols=213 Identities=12% Similarity=0.108 Sum_probs=136.3
Q ss_pred eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 239 NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 239 ~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
.|.++|.+++....+..+...+...+| ++||+.|+..+.+ ..|++||+.++.. +.+.....
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~w-SpDG~~la~~s~~~~~~~l~~~~l~~g~~---------------~~l~~~~g 243 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRW-SPDGKRIAYVSFEQKRPRIFVQNLDTGRR---------------EQITNFEG 243 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeE-CCCCCEEEEEEcCCCCCEEEEEECCCCCE---------------EEccCCCC
Confidence 488889887776777778888999999 8999999877654 3699999988761 11112223
Q ss_pred CccEEEEeCCCCeEEEEEeC-C--eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 316 VHPRVCWHPHKQEILMLAIG-N--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~-~--~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
......|+|++..++.+... + .+++++... +. ...+..+........|+||| ..|
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~--------------------~~~lt~~~~~~~~~~~spDg-~~i 301 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQ--------------------LSRVTNHPAIDTEPFWGKDG-RTL 301 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CC--------------------eEEcccCCCCcCCeEECCCC-CEE
Confidence 34468999999988765543 2 355555432 11 22233455556678999999 555
Q ss_pred EEEe-CCC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCCCCCCCCCCcc
Q 039790 393 ASAS-LDG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 393 aSgs-~Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+..+ .+| .|.+||+.+++..... .... ......|+ |||++|+.....++ .|.+||+.++
T Consensus 302 ~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~-~~~~~~~S----pdg~~i~~~~~~~~~~~l~~~dl~tg---------- 365 (430)
T PRK00178 302 YFTSDRGGKPQIYKVNVNGGRAERVT-FVGN-YNARPRLS----ADGKTLVMVHRQDGNFHVAAQDLQRG---------- 365 (430)
T ss_pred EEEECCCCCceEEEEECCCCCEEEee-cCCC-CccceEEC----CCCCEEEEEEccCCceEEEEEECCCC----------
Confidence 4444 444 5777888877643322 1222 34567899 99999988763444 5788898876
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC---CeEEEEEcC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK---NAIYAIHMD 518 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D---g~I~iWdl~ 518 (1395)
.. ..+.. ... .....|++||.+|+..+.+ ..|+++++.
T Consensus 366 --~~-~~lt~-~~~---------~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 366 --SV-RILTD-TSL---------DESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred --CE-EEccC-CCC---------CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 32 22221 111 1125789999988877643 347777764
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.5e-07 Score=110.77 Aligned_cols=234 Identities=14% Similarity=0.241 Sum_probs=153.2
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCC-C-CEEEE-----EECCCcEEEEECCCCCC
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAED-V-HLLAS-----ASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~d-g-~~LaS-----gs~DgtV~IWdl~tg~~ 292 (1395)
++..|+.|..+.|-- ..+.+++|+...-....-.-|...|..+.+ ++. . ..+++ .|.-+.|+||.+.....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl~~~~i~~f~l-Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKLSVSGITMLSL-SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceeeeeeccceeeEEe-cCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 467788887754443 347899999987543333446778999999 554 2 23332 35566799999874320
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC------------eEEEEEcCCCCccccccCCCCCcc
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN------------RILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~------------~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
...+..-.++ ......+.|+..+.-+|+....+ .++.+... +
T Consensus 207 --------~~~~a~ksFF---kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g------------- 260 (566)
T KOG2315|consen 207 --------HQPVANKSFF---KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--G------------- 260 (566)
T ss_pred --------cchhhhcccc---ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--C-------------
Confidence 0011111111 12233678888888776655421 12222221 0
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEE--EeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLAS--ASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS--gs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
....+-....++|.++.|++++ +-|+. |-.-..+-|||++ +.++..|. .+ +=+++-|+ |.|++
T Consensus 261 ------~s~~V~L~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr-~~~v~df~--eg-pRN~~~fn----p~g~i 325 (566)
T KOG2315|consen 261 ------ESVSVPLLKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLR-GKPVFDFP--EG-PRNTAFFN----PHGNI 325 (566)
T ss_pred ------ceEEEecCCCCCceEEEECCCC-CEEEEEEecccceEEEEcCC-CCEeEeCC--CC-CccceEEC----CCCCE
Confidence 0022222357899999999998 44433 4456789999975 56666653 44 67899999 99999
Q ss_pred EEEEecCC--CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC------CC
Q 039790 439 LITGGPLN--RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK------KN 510 (1395)
Q Consensus 439 L~s~Gs~D--g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~------Dg 510 (1395)
|+.+|..+ |.|-|||+.+. +++..++..... .+.|+|||.+++++.. |+
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~------------K~i~~~~a~~tt-----------~~eW~PdGe~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNR------------KLIAKFKAANTT-----------VFEWSPDGEYFLTATTAPRLRVDN 382 (566)
T ss_pred EEEeecCCCCCceEEEeccch------------hhccccccCCce-----------EEEEcCCCcEEEEEeccccEEecC
Confidence 99998543 89999999887 888888765533 5899999999998874 78
Q ss_pred eEEEEEcCC
Q 039790 511 AIYAIHMDY 519 (1395)
Q Consensus 511 ~I~iWdl~~ 519 (1395)
.++|||+..
T Consensus 383 g~KiwhytG 391 (566)
T KOG2315|consen 383 GIKIWHYTG 391 (566)
T ss_pred CeEEEEecC
Confidence 899999853
No 246
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.99 E-value=1.2e-08 Score=112.04 Aligned_cols=258 Identities=12% Similarity=0.112 Sum_probs=164.4
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCC-CEEEEEECCCcEEEEECCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDV-HLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg-~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
+.|.-+.|+.|..++..+ ..|+.|.+|++...+ ...+......+..++| +||| ++|.+...|-+|.||.+.+.+
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~W-SPdgrhiL~tseF~lriTVWSL~t~~-- 125 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISW-SPDGRHILLTSEFDLRITVWSLNTQK-- 125 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeE-CCCcceEeeeecceeEEEEEEeccce--
Confidence 456667788888776655 789999999998765 3356666778999999 8999 667778889999999999865
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEc--------------CC-CCccccccCCCCC
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDS--------------NR-VGKGERFSAEEPL 358 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~--------------~~-~~~~~~~s~~~~~ 358 (1395)
...+......+..++|+++|++.......+..-.+.. .. ...+..|++++.+
T Consensus 126 -------------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~ 192 (447)
T KOG4497|consen 126 -------------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW 192 (447)
T ss_pred -------------eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence 1223333445567899999986666655443211110 00 1123445555544
Q ss_pred ccCccccccceEEEcccC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---------------------------
Q 039790 359 KCPVDELINGVQLVGKHD-GEITELSMCQWLTTRLASASLDGTVKIWDDRKST--------------------------- 410 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~-~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--------------------------- 410 (1395)
.. +|+..-..+++.-|. -.+..++|+|.+ ++|+.|+.|+.+||.+--+.+
T Consensus 193 la-Vwd~~Leykv~aYe~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ 270 (447)
T KOG4497|consen 193 LA-VWDNVLEYKVYAYERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV 270 (447)
T ss_pred EE-EecchhhheeeeeeeccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence 32 233222233332233 578999999988 899999999999986532111
Q ss_pred ---------------------------------eeEEecCCC-----CCCeeEEEEeecCCCCCcEEEEEec-CCCeEEE
Q 039790 411 ---------------------------------PLAVLRPYD-----GHPVNCVTFLIGPHPQHIVLITGGP-LNRELKI 451 (1395)
Q Consensus 411 ---------------------------------~l~tl~~h~-----~~~V~sV~fs~~~~pdg~~L~s~Gs-~Dg~I~I 451 (1395)
.++.++... ...+.-++|+ +|..++++-.+ .-+.+-|
T Consensus 271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs----~Ds~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS----CDSTYAATRNDKYPNALWL 346 (447)
T ss_pred hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec----CCceEEeeecCCCCceEEE
Confidence 011111100 0146788999 89988888431 1246899
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
||+... +....+... ..+ ....|.|....|+.+.....+|+|...
T Consensus 347 Wdlq~l------------~l~avLiQk-~pi---------raf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 347 WDLQNL------------KLHAVLIQK-HPI---------RAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred Eechhh------------hhhhhhhhc-cce---------eEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 999875 322222211 111 246778888888877777889999864
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.99 E-value=3.7e-09 Score=115.99 Aligned_cols=218 Identities=13% Similarity=0.107 Sum_probs=144.4
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECCCcEEEEECCCCCCCCCCcccc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
+.|||+|+|||+++.- .+.|-|.++-++..+..--+.|.-+.| ..|..+++ ....|+.|.+|++...+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW-~ads~~ilC~~yk~~~vqvwsl~Qpe--------- 82 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEW-KADSCHILCVAYKDPKVQVWSLVQPE--------- 82 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheee-eccceeeeeeeeccceEEEEEeecce---------
Confidence 4699999999999865 777888887654433333457888999 66655544 55778899999999765
Q ss_pred cceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 301 GKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 301 ~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
+ ...+..+...+..++|+|+|++++..+.-+.-+.+|.....+ ...+.--+..+.
T Consensus 83 --w---~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--------------------~~~~~~pK~~~k 137 (447)
T KOG4497|consen 83 --W---YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--------------------GYLLPHPKTNVK 137 (447)
T ss_pred --e---EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--------------------eEEecccccCce
Confidence 1 122334556677899999998888777654444444333222 222332334568
Q ss_pred EEEEecCCCcEEEEEeCCCc---EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC----eEEEEE
Q 039790 381 ELSMCQWLTTRLASASLDGT---VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR----ELKIWA 453 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~---IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg----~I~IWD 453 (1395)
.++|++|| ++.+.++.-.. +.|..-.....++.++...- ..+.+.|+ |||.+|++ .|. .|.+|.
T Consensus 138 g~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~-DltgieWs----Pdg~~laV---wd~~Leykv~aYe 208 (447)
T KOG4497|consen 138 GYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI-DLTGIEWS----PDGNWLAV---WDNVLEYKVYAYE 208 (447)
T ss_pred eEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc-cccCceEC----CCCcEEEE---ecchhhheeeeee
Confidence 89999999 77777765322 33333334456666665554 67899999 99988876 333 222222
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
...| ...+.|+|.+++|+.|+.|+.+||.+-
T Consensus 209 ~~lG---------------------------------~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 209 RGLG---------------------------------LKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred eccc---------------------------------eeEEEeccccceEEeeccchhhhhhce
Confidence 2111 124889999999999999999988653
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.98 E-value=1.1e-06 Score=105.04 Aligned_cols=256 Identities=11% Similarity=0.130 Sum_probs=162.0
Q ss_pred CCEEEEEEecCCCEEEEEEc----CCeEEEEECCC--CceE---EeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEEEE
Q 039790 217 GLVLGRQIAVNRNYICYGLK----LGNIRILNIIT--ALRS---LLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFIWN 286 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~----DG~IrIWd~~~--~~~~---~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~IWd 286 (1395)
.....+++++++++|.+... +|.|..|++.. +.+. ........-..+++ .+++++|+++. .+|+|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~-~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV-DPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE-CTTSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE-ecCCCEEEEEEccCCeEEEEE
Confidence 34456779999999998876 57999998876 3332 23323445667888 89999888887 489999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEec----------CCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCC
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILA----------DGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~----------~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.... .+........ .......++.|+|++++++++..+ +.|.+++.......
T Consensus 116 l~~~g----------~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~------ 179 (345)
T PF10282_consen 116 LDDDG----------SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK------ 179 (345)
T ss_dssp ECTTS----------EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T------
T ss_pred ccCCc----------ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce------
Confidence 98732 1111211111 122334579999999998887764 56666655332110
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--CCc--eeEEecC----CCC-CCeeEE
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR--KST--PLAVLRP----YDG-HPVNCV 426 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~--sg~--~l~tl~~----h~~-~~V~sV 426 (1395)
+.............-..++|+|++..+++..-.+++|.+|++. .+. .+..+.. ..+ .....|
T Consensus 180 ---------l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 180 ---------LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp ---------EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred ---------EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 0000111223456788999999995556666778999999988 442 2333321 121 157889
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
.++ |||++|.++...+++|.+|++.... ...+.+..+....... ..+.++++|++|+++
T Consensus 251 ~is----pdg~~lyvsnr~~~sI~vf~~d~~~--------g~l~~~~~~~~~G~~P---------r~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 251 AIS----PDGRFLYVSNRGSNSISVFDLDPAT--------GTLTLVQTVPTGGKFP---------RHFAFSPDGRYLYVA 309 (345)
T ss_dssp EE-----TTSSEEEEEECTTTEEEEEEECTTT--------TTEEEEEEEEESSSSE---------EEEEE-TTSSEEEEE
T ss_pred EEe----cCCCEEEEEeccCCEEEEEEEecCC--------CceEEEEEEeCCCCCc---------cEEEEeCCCCEEEEE
Confidence 999 9999999988788999999994321 1124444444332222 358999999988776
Q ss_pred e-CCCeEEEEEcCC
Q 039790 507 A-KKNAIYAIHMDY 519 (1395)
Q Consensus 507 s-~Dg~I~iWdl~~ 519 (1395)
. .++.|.+|+++.
T Consensus 310 ~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 310 NQDSNTVSVFDIDP 323 (345)
T ss_dssp ETTTTEEEEEEEET
T ss_pred ecCCCeEEEEEEeC
Confidence 5 778999998853
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=5.8e-08 Score=119.85 Aligned_cols=201 Identities=14% Similarity=0.174 Sum_probs=125.3
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEE-EECCCc--EE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLAS-ASVDGR--FF 283 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaS-gs~Dgt--V~ 283 (1395)
+.+..+...+.+..|+|||++|++.+.+ ..|++||+.++....+....+.....+| ++||+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~w-SPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRF-SPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeE-CCCCCEEEEEEeCCCCeEEE
Confidence 3444455677788999999999987643 2588999988865555544445567899 899997764 566665 78
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+||+.++.. ..+..+.......+|+|++..++.++..+ .+++++... +.
T Consensus 290 ~~dl~tg~~---------------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~------------ 341 (448)
T PRK04792 290 VVDIATKAL---------------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK------------ 341 (448)
T ss_pred EEECCCCCe---------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC------------
Confidence 888887651 11222334456789999999887776532 344444321 11
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEe-CCCc--EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS-LDGT--VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs-~Dg~--IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
...+..+.......+|+||| ++|+..+ .++. |.++|+.++... .+.... ......|+ |||+
T Consensus 342 --------~~~Lt~~g~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~--~d~~ps~s----pdG~ 405 (448)
T PRK04792 342 --------VSRLTFEGEQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR--LDESPSVA----PNGT 405 (448)
T ss_pred --------EEEEecCCCCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE-EccCCC--CCCCceEC----CCCC
Confidence 11111122233457899999 5555544 3443 555788777643 333221 23355798 9999
Q ss_pred EEEEEecCCCe--EEEEECC
Q 039790 438 VLITGGPLNRE--LKIWASA 455 (1395)
Q Consensus 438 ~L~s~Gs~Dg~--I~IWDl~ 455 (1395)
+|+.+...++. |.+++..
T Consensus 406 ~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 406 MVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEEEecCCceEEEEEECC
Confidence 98876645544 6666763
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=8.9e-08 Score=118.03 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=133.7
Q ss_pred ccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECC
Q 039790 204 LEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVD 279 (1395)
Q Consensus 204 ~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~D 279 (1395)
..+.....+..+...+....|+|||++|++.+.+ ..|.+||+.++....+....+.+...+| ++||+.|+ +...+
T Consensus 186 ~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~-SpDG~~la~~~~~~ 264 (430)
T PRK00178 186 YDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAW-SPDGSKLAFVLSKD 264 (430)
T ss_pred CCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEE-CCCCCEEEEEEccC
Confidence 3444455566677788999999999999987654 3699999999876666655666678899 89998876 45555
Q ss_pred C--cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccC
Q 039790 280 G--RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 280 g--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~ 354 (1395)
| .|++||+.++.. ..+..+........|+|++..++.++..+ .+++++... +.
T Consensus 265 g~~~Iy~~d~~~~~~---------------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~------ 322 (430)
T PRK00178 265 GNPEIYVMDLASRQL---------------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR------ 322 (430)
T ss_pred CCceEEEEECCCCCe---------------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC------
Confidence 5 588889987751 11222333455678999999887776432 354444321 11
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeec
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL-DG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~-Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
...+...........|+||| ++|+..+. ++ .|.+||+.++.. ..+. +.. ......|+
T Consensus 323 --------------~~~lt~~~~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt-~~~-~~~~p~~s-- 382 (430)
T PRK00178 323 --------------AERVTFVGNYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-RILT-DTS-LDESPSVA-- 382 (430)
T ss_pred --------------EEEeecCCCCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-EEcc-CCC-CCCCceEC--
Confidence 11111112233457899999 56665554 33 488899988764 3333 222 33466898
Q ss_pred CCCCCcEEEEEecCCC--eEEEEECC
Q 039790 432 PHPQHIVLITGGPLNR--ELKIWASA 455 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg--~I~IWDl~ 455 (1395)
|||++|+.+...++ .|.++++.
T Consensus 383 --pdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 383 --PNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred --CCCCEEEEEEecCCceEEEEEECC
Confidence 99999988663443 45666664
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2e-09 Score=123.82 Aligned_cols=252 Identities=15% Similarity=0.211 Sum_probs=165.4
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEE
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASA 276 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSg 276 (1395)
+...+..|.||...|..++--.+.+-++++++|.+|++|.++.. +..++..|+.+|.++.| -.+-+++++|
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf-L~~lr~i~Sc 802 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF-LADLRSIASC 802 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee-eeccceeeec
Confidence 34456688999999998877778888999999999999998752 56788999999999999 6777777766
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEEEeC-CeEEEEEcCCCCccccccC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILMLAIG-NRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~ 354 (1395)
||-|.+||.--|.... .+..-..+...-...|.-. +...+++++.- .++..+|.+. ..
T Consensus 803 --D~giHlWDPFigr~La-----------q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce------ 862 (1034)
T KOG4190|consen 803 --DGGIHLWDPFIGRLLA-----------QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS-CE------ 862 (1034)
T ss_pred --cCcceeecccccchhH-----------hhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc-cc------
Confidence 7899999987665211 0111111111111122222 23334444443 4444444432 21
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
+.| .-.+..-.+....+.+++..+.| ++++.+-..|+|.+.|.|+|+.+..++...- ....++- |
T Consensus 863 ---~~~-----E~kVcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINswrpmec-dllqlaa-----p 927 (1034)
T KOG4190|consen 863 ---WTC-----ELKVCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVINSWRPMEC-DLLQLAA-----P 927 (1034)
T ss_pred ---cee-----eEEeccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCceeccCCcccc-hhhhhcC-----c
Confidence 111 00011223455678999999988 8999999999999999999999998886654 4455554 6
Q ss_pred CCcEEEEEecCCCeEEE-EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 435 QHIVLITGGPLNRELKI-WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~I-WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
..+.|+.+. .|.++.+ |....+ ....+.+... +...|. ..-|.-|++....+.+.
T Consensus 928 sdq~L~~sa-ldHslaVnWhaldg------------imh~q~kppp------epahfl-----qsvgpSLV~a~~Gn~lg 983 (1034)
T KOG4190|consen 928 SDQALAQSA-LDHSLAVNWHALDG------------IMHLQDKPPP------EPAHFL-----QSVGPSLVTAQNGNILG 983 (1034)
T ss_pred hhHHHHhhc-ccceeEeeehhcCC------------eeeeccCCCC------cchhhh-----hccCceeEEeccCcEEE
Confidence 778888876 8999999 987766 3332222222 112222 23366677777777788
Q ss_pred EEE
Q 039790 514 AIH 516 (1395)
Q Consensus 514 iWd 516 (1395)
+|.
T Consensus 984 VYa 986 (1034)
T KOG4190|consen 984 VYA 986 (1034)
T ss_pred EEe
Confidence 875
No 252
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.96 E-value=9.7e-07 Score=97.67 Aligned_cols=237 Identities=15% Similarity=0.188 Sum_probs=151.0
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCC-c--eEEeccCCCCeEEEEEeeCCCCEEEE-EECC------CcEEEEEC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITA-L--RSLLRGHTQRVTDMAFFAEDVHLLAS-ASVD------GRFFIWNI 287 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~--~~~l~~H~~~V~slaf~s~dg~~LaS-gs~D------gtV~IWdl 287 (1395)
....++|+-|...+++|..+| .|||+.+-- + ...+....-.+.-|-| ..++|+- ||.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEec
Confidence 345589999999999988766 899998752 1 1111111123444445 3344443 3333 46999994
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
.... .+..+.+ ...|..|++..+ .+++...+.|.+|.....-+.
T Consensus 83 ~k~~-----------~i~el~f----~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~------------------ 126 (346)
T KOG2111|consen 83 LKER-----------CIIELSF----NSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKL------------------ 126 (346)
T ss_pred ccCc-----------EEEEEEe----ccceeeEEEcCC---eEEEEecCeEEEEEcCCChhh------------------
Confidence 3333 2333332 345667777664 456666777777755322110
Q ss_pred ceEEEcc--cCCCeEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCce--eEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 368 GVQLVGK--HDGEITELSMCQWLTTRLAS-ASLDGTVKIWDDRKSTP--LAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 368 ~~~~l~~--h~~~V~slafspdg~~~LaS-gs~Dg~IrIWDl~sg~~--l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
++.+.. ....+.+++-+... .+||. |-.-|.|+|-|+...+. -..+.+|++ .|.||+.+ -+|..|+++
T Consensus 127 -l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln----~~Gt~vATa 199 (346)
T KOG2111|consen 127 -LHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALN----LQGTLVATA 199 (346)
T ss_pred -eeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEc----CCccEEEEe
Confidence 121211 11223333322222 34444 34568999999987654 478889998 99999999 899999997
Q ss_pred ecCCCe-EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 443 GPLNRE-LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~-I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+ ..|+ |||||..+| ..++.++-.... .-..+++||+++.+|++.++.|+|.||.+....
T Consensus 200 S-tkGTLIRIFdt~~g------------~~l~E~RRG~d~-------A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 200 S-TKGTLIRIFDTEDG------------TLLQELRRGVDR-------ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred c-cCcEEEEEEEcCCC------------cEeeeeecCCch-------heEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 6 7776 599999998 888877632221 123469999999999999999999999998644
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=1.6e-07 Score=115.98 Aligned_cols=213 Identities=13% Similarity=0.087 Sum_probs=131.7
Q ss_pred eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC-C--cEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 239 NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD-G--RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 239 ~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D-g--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
.|.++|.+......+..+...+.+..| ++||++|+..+.+ + .|++||+.+++. ..+ .....
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~w-SPDG~~La~~s~~~g~~~L~~~dl~tg~~------------~~l---t~~~g 262 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAW-SPDGRKLAYVSFENRKAEIFVQDIYTQVR------------EKV---TSFPG 262 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceE-CCCCCEEEEEEecCCCcEEEEEECCCCCe------------EEe---cCCCC
Confidence 677788877766667777889999999 9999988876543 2 589999987761 011 11122
Q ss_pred CccEEEEeCCCCeEEEEEeCCe---EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNR---ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~---ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
......|+|++..++.+...+. +++++... +. ...+..+.......+|+||| ++|
T Consensus 263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t-g~--------------------~~~lt~~~~~~~~p~wSpDG-~~I 320 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT-KA--------------------LTRITRHRAIDTEPSWHPDG-KSL 320 (448)
T ss_pred CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC-CC--------------------eEECccCCCCccceEECCCC-CEE
Confidence 3346899999998877654333 55554421 11 23333455566788999999 555
Q ss_pred EEEe-CCCc--EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe--EEEEECCCCCCCCCCCCcc
Q 039790 393 ASAS-LDGT--VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE--LKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 393 aSgs-~Dg~--IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~--I~IWDl~tg~~~~~~~~~~ 467 (1395)
+..+ .++. |.+||+.+++... +..+.. .....+|+ |||++|+.++..++. |.++|+.++
T Consensus 321 ~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~-~~~~~~~S----pDG~~l~~~~~~~g~~~I~~~dl~~g---------- 384 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLASGKVSR-LTFEGE-QNLGGSIT----PDGRSMIMVNRTNGKFNIARQDLETG---------- 384 (448)
T ss_pred EEEECCCCCceEEEEECCCCCEEE-EecCCC-CCcCeeEC----CCCCEEEEEEecCCceEEEEEECCCC----------
Confidence 4444 4444 6667887776433 222222 34567899 999999887644554 445676665
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC-C--eEEEEEcC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK-N--AIYAIHMD 518 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D-g--~I~iWdl~ 518 (1395)
.. ..+.... . .....|++||.+|+..+.+ + .+++++++
T Consensus 385 --~~-~~lt~~~-~---------d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 385 --AM-QVLTSTR-L---------DESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred --Ce-EEccCCC-C---------CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 32 2222111 1 1124789999988776543 3 36777763
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.94 E-value=4.8e-06 Score=99.51 Aligned_cols=302 Identities=14% Similarity=0.173 Sum_probs=177.9
Q ss_pred EEEEEcC----CeEEEEEC--CCCceEEec--cCCCCeEEEEEeeCCCCEEEEEEC----CCcEEEEECCCCCCCCCCcc
Q 039790 231 ICYGLKL----GNIRILNI--ITALRSLLR--GHTQRVTDMAFFAEDVHLLASASV----DGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 231 LasGs~D----G~IrIWd~--~~~~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~----DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++.|++. +.|++|++ .++.+..+. .-......|++ ++++++|.++.. +|.|..|++....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~-~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------- 73 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAV-SPDGRRLYVVNEGSGDSGGVSSYRIDPDT------- 73 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTT-------
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEE-EeCCCEEEEEEccccCCCCEEEEEECCCc-------
Confidence 4566665 79999988 445433222 23345667888 889999999887 5689999988641
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-----
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV----- 372 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l----- 372 (1395)
+ .+..+............+++++++.+++++.. ++.+.++.....+... .....+
T Consensus 74 --g-~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~----------------~~~~~~~~~g~ 134 (345)
T PF10282_consen 74 --G-TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG----------------EVVQTVRHEGS 134 (345)
T ss_dssp --T-EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEE----------------EEEEEEESEEE
T ss_pred --c-eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccc----------------eeeeecccCCC
Confidence 0 12222223223344457899999999888886 5566666654433211 001111
Q ss_pred -----cccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCc--e--eEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 373 -----GKHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDRKST--P--LAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 373 -----~~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~sg~--~--l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
........++.|+|++ ++|++.. ....|.+|++.... . ...+....+.....+.|+ |+|+++.+.
T Consensus 135 g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~----pdg~~~Yv~ 209 (345)
T PF10282_consen 135 GPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS----PDGKYAYVV 209 (345)
T ss_dssp ESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-----TTSSEEEEE
T ss_pred CCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc----CCcCEEEEe
Confidence 1123457899999998 5555544 45679999987654 2 234444444478999998 999999888
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE-EeCCCeEEEEEcCCCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA-NAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS-gs~Dg~I~iWdl~~g~ 521 (1395)
+..+++|.+|++.... ..++.++++....... ........+.+++||++|.+ ....+.|.+|+++..
T Consensus 210 ~e~s~~v~v~~~~~~~--------g~~~~~~~~~~~~~~~---~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~- 277 (345)
T PF10282_consen 210 NELSNTVSVFDYDPSD--------GSLTEIQTISTLPEGF---TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA- 277 (345)
T ss_dssp ETTTTEEEEEEEETTT--------TEEEEEEEEESCETTS---CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-
T ss_pred cCCCCcEEEEeecccC--------CceeEEEEeeeccccc---cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-
Confidence 8889999999998321 1234455554332211 11113346899999997655 446788999999531
Q ss_pred CCCCcceeeeeeeec--cccE-EEEecCCCCcC--c-CCCCeEEEEEc--CCCceeee----cccceEEec
Q 039790 522 NPASTRMDYIAEFTV--TMPI-LSLTGTTTDAS--P-DGEHIVQIYCV--QTQAIQQY----ALDLSQCLP 580 (1395)
Q Consensus 522 ~~~~~~~~~i~~f~~--~~~i-ls~~~~~~d~~--~-s~dg~V~lWdv--~t~~i~~~----~~~~~~cl~ 580 (1395)
...+..+..+.. ..|. +.++... +.+ . ..++.|.+|++ .+|.+... .+.-..|+.
T Consensus 278 ---~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 278 ---TGTLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp ---TTTEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred ---CCceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 123444444433 2222 3333232 222 1 35678998876 56766433 344455654
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=7.8e-08 Score=112.64 Aligned_cols=250 Identities=13% Similarity=0.110 Sum_probs=158.1
Q ss_pred cCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEE
Q 039790 255 GHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILML 332 (1395)
Q Consensus 255 ~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~ 332 (1395)
+|...-+.|.. ++||.|+ ++|..--.|++||+..- .+++..+.+..+..+..-. +-..++..
T Consensus 49 e~p~ast~ik~-s~DGqY~lAtG~YKP~ikvydlanL---------------SLKFERhlDae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 49 EMPTASTRIKV-SPDGQYLLATGTYKPQIKVYDLANL---------------SLKFERHLDAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CCccccceeEe-cCCCcEEEEecccCCceEEEEcccc---------------eeeeeecccccceeEEEeccchhhheEe
Confidence 57778889999 9999975 45666778999999864 3555555555443332221 11122222
Q ss_pred EeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee
Q 039790 333 AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL 412 (1395)
Q Consensus 333 g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l 412 (1395)
..+..|-..-- .| .+.-..-.....+++++... .-|..++....|+-+++..|+.+
T Consensus 113 ~~DR~IefHak--~G---------------------~hy~~RIP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL 168 (703)
T KOG2321|consen 113 QNDRTIEFHAK--YG---------------------RHYRTRIPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFL 168 (703)
T ss_pred ecCceeeehhh--cC---------------------eeeeeecCcCCccccccCCC-ccEEEeecCcceEEEEccccccc
Confidence 22221111100 00 00000112334567776554 23444445566888999999999
Q ss_pred EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc--cccccc
Q 039790 413 AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR--LEDAFF 490 (1395)
Q Consensus 413 ~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~--~~~~~~ 490 (1395)
.-|....+ .+++|..+ +...+|++|+ .||.|.+||.++. ..+.++......... .....-
T Consensus 169 ~P~~~~~~-~lN~v~in----~~hgLla~Gt-~~g~VEfwDpR~k------------srv~~l~~~~~v~s~pg~~~~~s 230 (703)
T KOG2321|consen 169 NPFETDSG-ELNVVSIN----EEHGLLACGT-EDGVVEFWDPRDK------------SRVGTLDAASSVNSHPGGDAAPS 230 (703)
T ss_pred cccccccc-cceeeeec----CccceEEecc-cCceEEEecchhh------------hhheeeecccccCCCccccccCc
Confidence 99987776 89999998 7777777655 8999999999987 555666554431110 111223
Q ss_pred ceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCC---CcCcC-CCCeEEEEEcCCC
Q 039790 491 NQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTT---DASPD-GEHIVQIYCVQTQ 566 (1395)
Q Consensus 491 ~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~---d~~~s-~dg~V~lWdv~t~ 566 (1395)
+..+.|+.+|..++.|..+|.|+|||+.+... -.+..+....|+..+++... +.+.+ ....++|||-.+|
T Consensus 231 vTal~F~d~gL~~aVGts~G~v~iyDLRa~~p------l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 231 VTALKFRDDGLHVAVGTSTGSVLIYDLRASKP------LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTG 304 (703)
T ss_pred ceEEEecCCceeEEeeccCCcEEEEEcccCCc------eeecccCCccceeeecccccCCCceEEecchHHhhhcccccC
Confidence 45799999999999999999999999987432 13444555567878777542 11223 4577999999998
Q ss_pred ce
Q 039790 567 AI 568 (1395)
Q Consensus 567 ~i 568 (1395)
+.
T Consensus 305 k~ 306 (703)
T KOG2321|consen 305 KP 306 (703)
T ss_pred Cc
Confidence 65
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.93 E-value=9.1e-08 Score=113.43 Aligned_cols=194 Identities=17% Similarity=0.243 Sum_probs=136.5
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEe------C-------------CCC
Q 039790 267 AEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWH------P-------------HKQ 327 (1395)
Q Consensus 267 s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~s------p-------------~~~ 327 (1395)
++...+||....||.+||||...++....+. -.....+..++..|. | .+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~-----------p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t 70 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFA-----------PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT 70 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeec-----------cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc
Confidence 5667899999999999999999887322221 011111111222221 1 122
Q ss_pred eEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 039790 328 EILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD 406 (1395)
Q Consensus 328 ~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl 406 (1395)
..++.|. .+.+..+..... .. .....-.+|.+.|+++.++.+- ..|.|++.|+.+..|+.
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g-~i-----------------t~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~ 131 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGG-EI-----------------TAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILE 131 (541)
T ss_pred eEEEeecCCccEEEEEecCC-eE-----------------EEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEec
Confidence 3444444 444444444222 11 0012235799999999999887 79999999999999999
Q ss_pred CCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccc
Q 039790 407 RKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLE 486 (1395)
Q Consensus 407 ~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~ 486 (1395)
..+..++.+++-.. .+.+++++ |||..|++++ ++|++||+.++ +.+.+|.+|.+.+.+
T Consensus 132 ~~~~~~~~~~~~~~-~~~sl~is----~D~~~l~~as---~~ik~~~~~~k------------evv~~ftgh~s~v~t-- 189 (541)
T KOG4547|consen 132 KEKVIIRIWKEQKP-LVSSLCIS----PDGKILLTAS---RQIKVLDIETK------------EVVITFTGHGSPVRT-- 189 (541)
T ss_pred ccceeeeeeccCCC-ccceEEEc----CCCCEEEecc---ceEEEEEccCc------------eEEEEecCCCcceEE--
Confidence 99999999998876 89999999 9999999865 89999999998 999999999988765
Q ss_pred ccccceEEEEeCC-----CCEEEEEe-CCCeEEEEEcCC
Q 039790 487 DAFFNQVVALNRA-----GLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 487 ~~~~~~~l~~S~d-----g~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
+.|-.+ |.+++++. .+..|.+|-++.
T Consensus 190 -------~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 190 -------LSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -------EEEEEeccccccceeeeccccccceeEEEEEc
Confidence 555444 66666554 556678887765
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=3.1e-07 Score=112.61 Aligned_cols=223 Identities=13% Similarity=0.103 Sum_probs=134.6
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCE--E-EEEECCC--cEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHL--L-ASASVDG--RFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~--L-aSgs~Dg--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
+.|.+.|.+++....+..+...+.+-+| +|||+. + ++...+| .|++.++..+... .+ ..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~w-SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~------------~l---t~ 228 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTW-MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK------------KI---LA 228 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceE-ccCCCceEEEEEEccCCCceEEEEECCCCCce------------Ee---ec
Confidence 4688888888766666666667788899 999874 2 2444443 5888888877510 11 11
Q ss_pred CCCCccEEEEeCCCCeEEEEEeC-C--eEEE--EEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIG-N--RILK--IDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~-~--~ii~--~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
.........|+|+|..|+.+... + .+.. |+... +.. .....+..++.+.....+|+||
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~-g~~----------------g~~~~lt~~~~~~~~~p~wSPD 291 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET-GAI----------------GKPRRLLNEAFGTQGNPSFSPD 291 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc-CCC----------------CcceEeecCCCCCcCCeEECCC
Confidence 22333457999999988877642 1 1222 22211 100 0012233333344567899999
Q ss_pred CCcEEEEEe-CCCcEEEEe--CCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC--CeEEEEECCCCCCCC
Q 039790 388 LTTRLASAS-LDGTVKIWD--DRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN--RELKIWASAEEEGWL 461 (1395)
Q Consensus 388 g~~~LaSgs-~Dg~IrIWD--l~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D--g~I~IWDl~tg~~~~ 461 (1395)
| +.|+..+ .+|..+||. +.. +.....+..+.+ .+....|+ |||++|+.++..+ ..|.+||+.++
T Consensus 292 G-~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~wS----PDG~~Laf~~~~~g~~~I~v~dl~~g---- 361 (428)
T PRK01029 292 G-TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAWS----PDGKKIAFCSVIKGVRQICVYDLATG---- 361 (428)
T ss_pred C-CEEEEEECCCCCceEEEEECcccccceEEeccCCC-CccceeEC----CCCCEEEEEEcCCCCcEEEEEECCCC----
Confidence 9 5555544 567666664 432 333455555544 67889999 9999998766333 47999999877
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC---CCeEEEEEcCCCC
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK---KNAIYAIHMDYGP 521 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~---Dg~I~iWdl~~g~ 521 (1395)
++.. +...... .....|++||++|+..+. +..|++|++..++
T Consensus 362 --------~~~~-Lt~~~~~---------~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 362 --------RDYQ-LTTSPEN---------KESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred --------CeEE-ccCCCCC---------ccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 4332 2211111 124789999998875443 3568888987653
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=3.2e-07 Score=112.51 Aligned_cols=210 Identities=13% Similarity=0.097 Sum_probs=130.4
Q ss_pred eeeeCCCCCEEEEEEecCCCE--EE-EEEcC--CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC-CC---
Q 039790 210 TKYISDPGLVLGRQIAVNRNY--IC-YGLKL--GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV-DG--- 280 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~--La-sGs~D--G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-Dg--- 280 (1395)
+.+..+...+..=.|+|||+. ++ +...+ ..|.+.++.++....+....+.....+| ++||+.|+..+. +|
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~w-SPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTF-SPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEE-CCCCCEEEEEECCCCCcc
Confidence 334444455566689999975 33 33333 4688889988876666656666778899 999998887653 22
Q ss_pred -cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-Ce--EEEEEcCCCCccccccCCC
Q 039790 281 -RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NR--ILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 281 -tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~--ii~~d~~~~~~~~~~s~~~ 356 (1395)
.+.+|++..+.. +. ..++...........+|+|+|..|+.++.. +. +++++....+.
T Consensus 257 i~~~~~~~~~g~~--------g~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-------- 317 (428)
T PRK01029 257 LFIQSFSLETGAI--------GK---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-------- 317 (428)
T ss_pred eeEEEeecccCCC--------Cc---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--------
Confidence 344477765320 00 112222222334568999999988877643 32 33333211110
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
....+..+...+....|+||| ++|+..+.+ ..|.+||+.+++... +..... .+....|+
T Consensus 318 -----------~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~-~~~~p~wS---- 379 (428)
T PRK01029 318 -----------SPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPE-NKESPSWA---- 379 (428)
T ss_pred -----------ceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCC-CccceEEC----
Confidence 023333445567889999999 666655443 369999999887644 332333 57889999
Q ss_pred CCCcEEEEEecC--CCeEEEEECCCC
Q 039790 434 PQHIVLITGGPL--NRELKIWASAEE 457 (1395)
Q Consensus 434 pdg~~L~s~Gs~--Dg~I~IWDl~tg 457 (1395)
|||++|+..... ...|.+||+..+
T Consensus 380 pDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 380 IDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCC
Confidence 999988765422 357888898776
No 259
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.86 E-value=9.6e-08 Score=104.27 Aligned_cols=207 Identities=17% Similarity=0.145 Sum_probs=141.4
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
...++.|+..+.-++++..+|.+.+-+.... ..+.++.|.-+.+...|+..+.+++.+||.||.+..||++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--- 199 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--- 199 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---
Confidence 3567889999999999999999996666554 3457899999999999977778999999999999999999432
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
...|+. ...
T Consensus 200 ------------------------~~i~~n-----------------------------------------------~kv 208 (339)
T KOG0280|consen 200 ------------------------TFIWHN-----------------------------------------------SKV 208 (339)
T ss_pred ------------------------ceeeec-----------------------------------------------cee
Confidence 011111 113
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
|...|.+|.-+|..+.+|++|+.|-.|++||.|. ++++..-..- | .|+.+.+.|- -.++.|++ + .-+-.+|-+
T Consensus 209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-GVWRi~~~p~--~~~~lL~~-C-Mh~G~ki~~ 282 (339)
T KOG0280|consen 209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-GVWRIKHHPE--IFHRLLAA-C-MHNGAKILD 282 (339)
T ss_pred eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-ceEEEEecch--hhhHHHHH-H-HhcCceEEE
Confidence 8888999999888778999999999999999995 6777654433 3 7999999822 12334554 3 344478888
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEE-EEEcCCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIY-AIHMDYG 520 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~-iWdl~~g 520 (1395)
+..+.. +--..+..++.|.+..+. ..|.....+|++++ .|+.|+ +|-.-++
T Consensus 283 ~~~~~~-------e~~~~~~s~~~hdSl~YG---------~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVL-------EFQIVLPSDKIHDSLCYG---------GDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eccccc-------chheeeeccccccceeec---------cccccccceeeeeeccccceeeeeeeccC
Confidence 876511 000123344455443322 22222234566654 577755 7765443
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=1.2e-06 Score=117.68 Aligned_cols=265 Identities=15% Similarity=0.153 Sum_probs=155.2
Q ss_pred EEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEecc--C------------CCCeEEEEEeeCCCCEEEEEE-CCCcEE
Q 039790 220 LGRQIAVN-RNYICYGLKLGNIRILNIITALRSLLRG--H------------TQRVTDMAFFAEDVHLLASAS-VDGRFF 283 (1395)
Q Consensus 220 ~~va~Spd-g~~LasGs~DG~IrIWd~~~~~~~~l~~--H------------~~~V~slaf~s~dg~~LaSgs-~DgtV~ 283 (1395)
..++++++ ++++++-+.++.|++||..+.....+.+ . -..-..|+| .++++.|+.+. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIav-d~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAY-NAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEE-eCCCCEEEEEeCCCceEE
Confidence 46788874 5666777788999999987654443332 1 123578899 66677555544 457899
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEec-------CC-------CCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILA-------DG-------DSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGK 348 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~-------~~-------~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~ 348 (1395)
++|+.++. +..+.-.+ +. -..-..++|+++++.++++..+ +.|.+|+.. .+.
T Consensus 650 ~id~~~~~------------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~-~g~ 716 (1057)
T PLN02919 650 EIDFVNET------------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS-DGV 716 (1057)
T ss_pred EEecCCCE------------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC-CCe
Confidence 99987754 11111000 00 0122478999977677666654 555555542 222
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-------------
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL------------- 415 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl------------- 415 (1395)
...|..++.... ..+.......-...+.|+|+++|..++++-+.++.|++||+.++......
T Consensus 717 v~~~~G~G~~~~-----~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~f 791 (1057)
T PLN02919 717 TRVFSGDGYERN-----LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKF 791 (1057)
T ss_pred EEEEecCCcccc-----CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccc
Confidence 211211110000 00000000112346789999998546777777899999999876532111
Q ss_pred cCCCC-------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc-----
Q 039790 416 RPYDG-------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL----- 483 (1395)
Q Consensus 416 ~~h~~-------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~----- 483 (1395)
..+++ .....|+|+ ++|..+++- ..++.|++||..++ .+. ++-+.+....
T Consensus 792 G~~dG~g~~~~l~~P~Gvavd----~dG~LYVAD-s~N~rIrviD~~tg------------~v~-tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 792 GDHDGVGSEVLLQHPLGVLCA----KDGQIYVAD-SYNHKIKKLDPATK------------RVT-TLAGTGKAGFKDGKA 853 (1057)
T ss_pred cCCCCchhhhhccCCceeeEe----CCCcEEEEE-CCCCEEEEEECCCC------------eEE-EEeccCCcCCCCCcc
Confidence 00100 134688998 899866664 48999999999876 333 2322211000
Q ss_pred cccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 484 RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 484 ~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
....-.....++++++|+++++.+.++.|++||+.++.
T Consensus 854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 00000122368999999999999999999999998754
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=1.3e-05 Score=90.91 Aligned_cols=237 Identities=15% Similarity=0.136 Sum_probs=153.5
Q ss_pred CCeEEEEECCCC--c--eEEeccCCCCeEEEEEeeCCCCEEEEEECC---CcEEEEECCC--CCCCCCCcccccceEEEE
Q 039790 237 LGNIRILNIITA--L--RSLLRGHTQRVTDMAFFAEDVHLLASASVD---GRFFIWNITE--GPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 237 DG~IrIWd~~~~--~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gtV~IWdl~t--g~~~~~~~~~~~~~i~~l 307 (1395)
+.-|++|++++. . ...+-.+.+.++-|+| .+++++|.++-.+ |.|-.|.++. |. +..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~-~~~~~~LY~v~~~~~~ggvaay~iD~~~G~------------Lt~l 81 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAV-NPDQRHLYVVNEPGEEGGVAAYRIDPDDGR------------LTFL 81 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEE-CCCCCEEEEEEecCCcCcEEEEEEcCCCCe------------EEEe
Confidence 467999999853 2 3344567788999999 8999888888665 6777777764 43 1111
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC-CccccccCCCCCccCccccccceEEEcccCCC--------
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV-GKGERFSAEEPLKCPVDELINGVQLVGKHDGE-------- 378 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~-------- 378 (1395)
.-.......-+.+++++++++++++......+.+..... +.. +.. +..+ .|.+.
T Consensus 82 n~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l-------------~~~---v~~~-~h~g~~p~~rQ~~ 144 (346)
T COG2706 82 NRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL-------------QPV---VQVV-KHTGSGPHERQES 144 (346)
T ss_pred eccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc-------------ccc---eeee-ecCCCCCCccccC
Confidence 111112233367999999998888887766555544322 211 000 1112 24444
Q ss_pred --eEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCceeE--EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 379 --ITELSMCQWLTTRLASASL-DGTVKIWDDRKSTPLA--VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 379 --V~slafspdg~~~LaSgs~-Dg~IrIWDl~sg~~l~--tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
+....|.|++ ++|++.+. --+|.+|++..|.... ...-..+...+.|.|. |++++....+-.+++|-+|.
T Consensus 145 ~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH----pn~k~aY~v~EL~stV~v~~ 219 (346)
T COG2706 145 PHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH----PNGKYAYLVNELNSTVDVLE 219 (346)
T ss_pred CccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEc----CCCcEEEEEeccCCEEEEEE
Confidence 8889999998 78877764 2469999999875432 1112233468999997 99998888788999999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
..... ...++++++..-... -....+...+.+++||++|.++- ..+.|.+|.+..
T Consensus 220 y~~~~--------g~~~~lQ~i~tlP~d---F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 220 YNPAV--------GKFEELQTIDTLPED---FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EcCCC--------ceEEEeeeeccCccc---cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 98741 122445544332221 12223445788999999997764 345788888865
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.79 E-value=3e-08 Score=128.05 Aligned_cols=189 Identities=17% Similarity=0.175 Sum_probs=133.3
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
+-..|.++.=+|..-|.++|+.||.|++|....+. +..++ .-...|+.+.| +..|+.+..+..||.+.+|.+....
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f-~~qGnk~~i~d~dg~l~l~q~~pk~- 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF-NHQGNKFGIVDGDGDLSLWQASPKP- 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh-cccCCceeeeccCCceeecccCCcc-
Confidence 44567777777888899999999999999998873 44333 22378999999 8889999999999999999988322
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe---CCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI---GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~---~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
+.....|......+.|-. ..++..|. ++.+..||....... -
T Consensus 2285 --------------~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-------------------s 2329 (2439)
T KOG1064|consen 2285 --------------YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-------------------S 2329 (2439)
T ss_pred --------------eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-------------------c
Confidence 222233444444455533 11222222 334444544322211 1
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
.+-..|.+.+++++|-|.. .+|++|+.+|.|++||++..+.+++|.. + ....++++ |+..|.|
T Consensus 2330 ~v~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~----------~-----~~~~~f~~-~ss~g~i 2392 (2439)
T KOG1064|consen 2330 LVHTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQA----------L-----DTREYFVT-GSSEGNI 2392 (2439)
T ss_pred eeeeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhh----------h-----hhhheeec-cCcccce
Confidence 1226799999999999998 8999999999999999999988877764 2 12345666 5699999
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
+||++...
T Consensus 2393 kIw~~s~~ 2400 (2439)
T KOG1064|consen 2393 KIWRLSEF 2400 (2439)
T ss_pred EEEEcccc
Confidence 99999876
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.76 E-value=2.7e-06 Score=99.23 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=84.9
Q ss_pred ccCCCeEEEEEecCCCcEEEEE--eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC--CCeE
Q 039790 374 KHDGEITELSMCQWLTTRLASA--SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL--NREL 449 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSg--s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~--Dg~I 449 (1395)
...+.|.+++|.|.+ +.|+++ -.+-.+-++|++.. ....+ ..+ .=..+.|+ |.+++++.+|-. -|.|
T Consensus 272 ~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~-~rNT~~fs----p~~r~il~agF~nl~gni 342 (561)
T COG5354 272 DLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGN-LRFYF--PEQ-KRNTIFFS----PHERYILFAGFDNLQGNI 342 (561)
T ss_pred cccccceeeeecccC-CceeEEecccccceeecccccc-eEEec--CCc-cccccccc----CcccEEEEecCCccccce
Confidence 567899999999998 555444 47889999999866 33333 233 45788999 999999998732 2689
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe------CCCeEEEEEcCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA------KKNAIYAIHMDY 519 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs------~Dg~I~iWdl~~ 519 (1395)
-|||.... ..|+..+.+.... .+.|+|||.++.+.. .|+.|.|||+..
T Consensus 343 ~i~~~~~r-----------f~~~~~~~~~n~s-----------~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 343 EIFDPAGR-----------FKVAGAFNGLNTS-----------YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEeccCCc-----------eEEEEEeecCCce-----------EeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 99998754 2556567665432 478999999888765 478899999864
No 264
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.69 E-value=3.4e-06 Score=92.99 Aligned_cols=207 Identities=9% Similarity=0.086 Sum_probs=126.1
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc-------CCCCeEEEEEeeCC-----CCEEEEEECCCcEEEEE
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG-------HTQRVTDMAFFAED-----VHLLASASVDGRFFIWN 286 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~-------H~~~V~slaf~s~d-----g~~LaSgs~DgtV~IWd 286 (1395)
-..++||||+.+||++...|+|+|||+.+..+..+.. -...|..|.|.... ...|+.-..+|.++-|-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 4568999999999999999999999998765443332 23578888884332 23577777888888887
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
+..+... .-.....+.+..+....+.+++|+|..+.++++|....-...+.
T Consensus 126 vs~gt~q------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------------------- 176 (282)
T PF15492_consen 126 VSVGTNQ------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------------------- 176 (282)
T ss_pred EEcccCC------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-----------------------
Confidence 7543210 11233456666777888999999999987777776443100000
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEE-EEEeCCC------cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRL-ASASLDG------TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~L-aSgs~Dg------~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
+-...+++-..-.+.+.+. ++...|+ +-.+|.+-+.+... ..+.....|..+..| |||..|
T Consensus 177 -------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlS----Pdg~~L 244 (282)
T PF15492_consen 177 -------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLS----PDGSLL 244 (282)
T ss_pred -------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee-ccccCCCceEEEEEC----CCCCEE
Confidence 0111122222211111111 1122121 12344333222221 122222389999999 999999
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
++.. .+|.|.||++.+- ++.+.+..+.
T Consensus 245 a~ih-~sG~lsLW~iPsL------------~~~~~W~~~e 271 (282)
T PF15492_consen 245 ACIH-FSGSLSLWEIPSL------------RLQRSWKQDE 271 (282)
T ss_pred EEEE-cCCeEEEEecCcc------------hhhcccchhh
Confidence 9977 9999999999876 6666665443
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.64 E-value=1.9e-07 Score=106.21 Aligned_cols=170 Identities=12% Similarity=0.184 Sum_probs=115.7
Q ss_pred eEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE
Q 039790 260 VTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL 339 (1395)
Q Consensus 260 V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii 339 (1395)
+..+.+ ++.+.+|+.+..+....++++..... ..+. +... ......+.+.|..+...++++-..+.++
T Consensus 65 ~~~~~~-s~~~~llAv~~~~K~~~~f~~~~~~~-------~~kl---~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~ 132 (390)
T KOG3914|consen 65 PALVLT-SDSGRLVAVATSSKQRAVFDYRENPK-------GAKL---LDVS-CVPKRPTAISFIREDTSVLVADKAGDVY 132 (390)
T ss_pred cccccc-CCCceEEEEEeCCCceEEEEEecCCC-------ccee---eeEe-ecccCcceeeeeeccceEEEEeecCCce
Confidence 444555 67788888888888877777776541 0111 1111 1122233555555565666665555555
Q ss_pred EEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CC
Q 039790 340 KIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PY 418 (1395)
Q Consensus 340 ~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h 418 (1395)
.++.....++ ....+-||-..+++|+|+||+ .+|+++..|..|||-....-..+..|- ||
T Consensus 133 ~~di~s~~~~------------------~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH 193 (390)
T KOG3914|consen 133 SFDILSADSG------------------RCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGH 193 (390)
T ss_pred eeeeeccccc------------------CcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhcccc
Confidence 5555332211 134456899999999999999 899999999999998776655555544 79
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
.. .|..++.. +++.|+++| .|++|++||+.+| +++.++....
T Consensus 194 ~e-FVS~isl~-----~~~~LlS~s-GD~tlr~Wd~~sg------------k~L~t~dl~s 235 (390)
T KOG3914|consen 194 KE-FVSTISLT-----DNYLLLSGS-GDKTLRLWDITSG------------KLLDTCDLSS 235 (390)
T ss_pred Hh-heeeeeec-----cCceeeecC-CCCcEEEEecccC------------CcccccchhH
Confidence 87 99999995 667788866 9999999999999 7777766543
No 266
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.64 E-value=5.4e-07 Score=98.51 Aligned_cols=268 Identities=15% Similarity=0.202 Sum_probs=168.8
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC--Cc----eEEeccCC------------CCeEEEEEeeCCC-CEEEE
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--AL----RSLLRGHT------------QRVTDMAFFAEDV-HLLAS 275 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~--~~----~~~l~~H~------------~~V~slaf~s~dg-~~LaS 275 (1395)
..+.|++|.|...|.||++|.+.|.|.+|.-.. +| ...|++|. ..|..|.|+.+.+ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 346789999999999999999999999997654 23 23456664 3688899965443 35666
Q ss_pred EECCCcEEEEECCCCCCCC--------C----------------Ccccc--cceEE--EEEEe-cCCCCCccEEEEeCCC
Q 039790 276 ASVDGRFFIWNITEGPDEE--------D----------------KPQIL--GKIVV--AIQIL-ADGDSVHPRVCWHPHK 326 (1395)
Q Consensus 276 gs~DgtV~IWdl~tg~~~~--------~----------------~~~~~--~~~i~--~l~~~-~~~~~~v~~v~~sp~~ 326 (1395)
.+.|.+|++|.+....... . .++.. ...+. ..+++ ..|...+.++.|..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999998652100 0 00000 01111 11122 3455566677787776
Q ss_pred CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC-----CCeEEEEEecCCCcEEEEEeCCCcE
Q 039790 327 QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD-----GEITELSMCQWLTTRLASASLDGTV 401 (1395)
Q Consensus 327 ~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~-----~~V~slafspdg~~~LaSgs~Dg~I 401 (1395)
. .+.++.+-.|..|........ | . +.-++.|. .-|++..|+|..-+.|.-.+..|.|
T Consensus 185 e-t~lSaDdLrINLWnl~i~D~s--F------n---------IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 185 E-TLLSADDLRINLWNLEIIDGS--F------N---------IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred h-eeeeccceeeeeccccccCCc--e------E---------EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 5 444555555666654322110 0 0 22223333 4588899999876778888889999
Q ss_pred EEEeCCCCcee----E----EecC--------CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 402 KIWDDRKSTPL----A----VLRP--------YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 402 rIWDl~sg~~l----~----tl~~--------h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
++-|+|..... . ++.+ -.. .|..+.|+ ++|+++++- .--+|+|||++..
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivs-SISD~kFs----~ngryIlsR--dyltvkiwDvnm~-------- 311 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVS-SISDFKFS----DNGRYILSR--DYLTVKIWDVNMA-------- 311 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhh-hhcceEEc----CCCcEEEEe--ccceEEEEecccc--------
Confidence 99999953211 1 1111 112 68889999 999999872 4679999999865
Q ss_pred cccccEEEEEeccCcccccc-----ccccc-ceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 466 IESWKCTQTLELKSSAELRL-----EDAFF-NQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~-----~~~~~-~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
..|+.++..|....... .++.| .--+.||.|...+++|+..+..-|+-..
T Consensus 312 ---k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 312 ---KNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ---cCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 26788887665321110 11111 2247789999999999988877776543
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.61 E-value=2.7e-06 Score=93.24 Aligned_cols=190 Identities=14% Similarity=0.124 Sum_probs=127.3
Q ss_pred CCeEEEEECCCCce----EEeccCCCCeEEEEEee--CCCC-EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 237 LGNIRILNIITALR----SLLRGHTQRVTDMAFFA--EDVH-LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 237 DG~IrIWd~~~~~~----~~l~~H~~~V~slaf~s--~dg~-~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
-|.+.+|++..-.. .....-+..++.|.|.. .+|. .|+-+-.+|.|.++..........+.......+
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki----- 119 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI----- 119 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh-----
Confidence 46788898876421 12223345688888832 3455 566777789999998775442111111111100
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT 389 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~ 389 (1395)
.....-++.|++.+..++++-..+.+..++.... ....++..+.|.-.++...|+...+
T Consensus 120 ---~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~------------------~le~vq~wk~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 120 ---SVVEALSLDISTSGTKIFVSDSRGSISGVYETEM------------------VLEKVQTWKVHEFEAWTAKFSDKEP 178 (339)
T ss_pred ---hheeeeEEEeeccCceEEEEcCCCcEEEEeccee------------------eeeecccccccceeeeeeecccCCC
Confidence 0012336788888888888877777765544221 1122456778999999999999888
Q ss_pred cEEEEEeCCCcEEEEeCC-CCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 390 TRLASASLDGTVKIWDDR-KSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~-sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+++.+|+.|+.+..||+| .++.+.. .+-|.. .|.++.-++ |.+.+|++ |+.|-.|++||.++-
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~---~~~~~I~T-GsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSP---PKPTYIAT-GSYDECIRVLDTRNM 243 (339)
T ss_pred ceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCC---CCCceEEE-eccccceeeeehhcc
Confidence 999999999999999999 3455554 456765 899999883 56667777 569999999999854
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.61 E-value=1.7e-07 Score=121.34 Aligned_cols=206 Identities=15% Similarity=0.198 Sum_probs=150.1
Q ss_pred cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 236 KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
.++...-|..+.+-+ .++.|-..|.++.= .+...+.+||+.||.|++|....+. .+.+.+..+. .
T Consensus 2188 ~~~~~~tq~~~~~~~-~~k~~v~~v~r~~s-Hp~~~~Yltgs~dgsv~~~~w~~~~-----------~v~~~rt~g~--s 2252 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASV-MIKHPVENVRRMTS-HPSDPYYLTGSQDGSVRMFEWGHGQ-----------QVVCFRTAGN--S 2252 (2439)
T ss_pred CCccccceeccccee-EeecccCceeeecC-CCCCceEEecCCCceEEEEeccCCC-----------eEEEeeccCc--c
Confidence 344444454443322 23334556777776 5666788999999999999988766 4455555544 7
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASA 395 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSg 395 (1395)
.++++.|+..|+.+-++-.+|.+-.|-... +++.....|.....++.|-. ..++++
T Consensus 2253 ~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p---------------------k~~~s~qchnk~~~Df~Fi~---s~~~ta 2308 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVDGDGDLSLWQASP---------------------KPYTSWQCHNKALSDFRFIG---SLLATA 2308 (2439)
T ss_pred hhhhhhhcccCCceeeeccCCceeecccCC---------------------cceeccccCCccccceeeee---hhhhcc
Confidence 888999999998887777777777775531 11334456999999999975 467766
Q ss_pred e---CCCcEEEEeCCCC---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 396 S---LDGTVKIWDDRKS---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 396 s---~Dg~IrIWDl~sg---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
+ .++.+.+||.-.. .+++ ..|.+ .+++++|. |..+.|++|| .+|.|+|||++..
T Consensus 2309 g~s~d~~n~~lwDtl~~~~~s~v~--~~H~~-gaT~l~~~----P~~qllisgg-r~G~v~l~D~rqr------------ 2368 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNSLVH--TCHDG-GATVLAYA----PKHQLLISGG-RKGEVCLFDIRQR------------ 2368 (2439)
T ss_pred ccCCCCCcccchhcccCcccceee--eecCC-CceEEEEc----CcceEEEecC-CcCcEEEeehHHH------------
Confidence 5 4688999996432 3444 77887 99999999 9999999977 9999999999876
Q ss_pred cEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 470 KCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 470 ~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.+++|.. +. ...++++|+..|.|+||++..
T Consensus 2369 ql~h~~~~------------------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2369 QLRHTFQA------------------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred HHHHHhhh------------------hh-hhheeeccCcccceEEEEccc
Confidence 66555543 11 456889999999999999875
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.60 E-value=1.4e-05 Score=107.59 Aligned_cols=225 Identities=10% Similarity=0.096 Sum_probs=136.0
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEeccC-----------------CCCeEEEEEeeC-CCCEEEEEE
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLLRGH-----------------TQRVTDMAFFAE-DVHLLASAS 277 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l~~H-----------------~~~V~slaf~s~-dg~~LaSgs 277 (1395)
..-.+++|.++++.|+++ ..++.|+++|..++.+.++.+- -..-++|+| .+ ++.++++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~-dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF-EPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEE-ecCCCeEEEEEC
Confidence 345788999988876665 4567899999988876665331 012367999 55 677888888
Q ss_pred CCCcEEEEECCCCCCCCCCcccccceEEEEEEec-----CCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCcccc
Q 039790 278 VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-----DGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGER 351 (1395)
Q Consensus 278 ~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-----~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~ 351 (1395)
.++.|++||..++.... ..+.- ......+ ..-.....++|+++++.++++..+ +.|.+|+....+. ..
T Consensus 703 ~~~~I~v~d~~~g~v~~----~~G~G-~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~ 776 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRV----FSGDG-YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RL 776 (1057)
T ss_pred CCCeEEEEECCCCeEEE----EecCC-ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EE
Confidence 89999999998765100 00000 0000000 011234569999999877777665 5666666543211 00
Q ss_pred ccCCCCC----ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-C---------
Q 039790 352 FSAEEPL----KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-P--------- 417 (1395)
Q Consensus 352 ~s~~~~~----~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~--------- 417 (1395)
+...... ...++.. .+... ...-.....++|+++| .++++-+.+++|++||..++....... +
T Consensus 777 ~~gg~~~~~~~l~~fG~~-dG~g~-~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDH-DGVGS-EVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEecccccCcccccccCC-CCchh-hhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 0000000 0000000 00000 0011234688999998 788888899999999998876543321 1
Q ss_pred ---CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 418 ---YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 418 ---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.-. ....|+++ ++|+.+++- ..++.|++||+.++
T Consensus 854 ~~a~l~-~P~GIavd----~dG~lyVaD-t~Nn~Irvid~~~~ 890 (1057)
T PLN02919 854 LKAQLS-EPAGLALG----ENGRLFVAD-TNNSLIRYLDLNKG 890 (1057)
T ss_pred cccccC-CceEEEEe----CCCCEEEEE-CCCCEEEEEECCCC
Confidence 111 57789998 899877764 48999999999887
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=4.5e-06 Score=97.91 Aligned_cols=244 Identities=14% Similarity=0.192 Sum_probs=139.6
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEEC-----------CCcEEEEEC
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASV-----------DGRFFIWNI 287 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-----------DgtV~IWdl 287 (1395)
+-+.|||.|.||++-..-| |.+|--..- .++.| .|. .|.-+.| +|+.+||+|-+. ...++|||+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp-~Vq~idf-SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHP-GVQFIDF-SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCC-Cceeeec-CCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4577999999999987755 779965543 23333 365 4888999 999999999653 256999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC---------------------
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV--------------------- 346 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~--------------------- 346 (1395)
.+|.....++.+. .......-+.|+.++.++... ..+.|.+++....
T Consensus 290 ~tG~lkrsF~~~~-----------~~~~~WP~frWS~DdKy~Arm-~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 290 ATGLLKRSFPVIK-----------SPYLKWPIFRWSHDDKYFARM-TGNSISIYETPSFMLLDKKSLKISGIRDFSWSPT 357 (698)
T ss_pred cccchhcceeccC-----------CCccccceEEeccCCceeEEe-ccceEEEEecCceeeecccccCCccccCcccCCC
Confidence 9998655554321 112222334455444322222 2233333322110
Q ss_pred -----------Cc---------------------------cccccCCCCCccCc----ccc-ccc----eEEEc------
Q 039790 347 -----------GK---------------------------GERFSAEEPLKCPV----DEL-ING----VQLVG------ 373 (1395)
Q Consensus 347 -----------~~---------------------------~~~~s~~~~~~~~~----~~~-~~~----~~~l~------ 373 (1395)
.. ...|...+.+.|.. -+. ..+ +.++.
T Consensus 358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 00 00111111222200 000 000 01110
Q ss_pred -----ccCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCC-C---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 374 -----KHDGEITELSMCQWLTTRLASASL---DGTVKIWDDRK-S---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 374 -----~h~~~V~slafspdg~~~LaSgs~---Dg~IrIWDl~s-g---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
.-...|..++|-|.| ..+++-+. ..++.+|-+.+ . +.+..|.. . ..+.|.|+ |.|++++.
T Consensus 438 pve~velke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~-~~N~vfws----PkG~fvvv 509 (698)
T KOG2314|consen 438 PVEVVELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--K-FANTVFWS----PKGRFVVV 509 (698)
T ss_pred CceeeecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--c-ccceEEEc----CCCcEEEE
Confidence 134567789999998 55555443 35799998873 2 34455543 2 67999999 99999887
Q ss_pred Ee--cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 442 GG--PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 442 ~G--s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
++ |..|.+.++|+... .+..+-.. ..+.-.-+.|.|.|+|+++++.
T Consensus 510 a~l~s~~g~l~F~D~~~a------------~~k~~~~~---------eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTDYA------------DLKDTASP---------EHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred EEecccccceEEEecchh------------hhhhccCc---------cccccccceECCCCCEEEEeee
Confidence 65 35789999998743 22221111 1111224889999999999875
No 271
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.59 E-value=4.1e-07 Score=103.63 Aligned_cols=162 Identities=16% Similarity=0.074 Sum_probs=111.6
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCce----EEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCC
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALR----SLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~----~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
+..+.+++++++||++..+....++++..... .....-..+-+.+.|...+ .......+....+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34456788899999998888877877766432 1111122233344442222 22233345555666666665442
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
...-+|-..++.|+|++|+++|+.+-.++.|.+.|....... -...
T Consensus 145 ---------------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-------------------esfc 190 (390)
T KOG3914|consen 145 ---------------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-------------------ESFC 190 (390)
T ss_pred ---------------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-------------------hhhc
Confidence 233467778899999999999999999999988887554332 2234
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~ 416 (1395)
-||+..|..++.-++ ..|++||.|++|++||+++|++++++.
T Consensus 191 lGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 579999999999875 579999999999999999999997765
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.58 E-value=4.9e-06 Score=92.70 Aligned_cols=237 Identities=12% Similarity=0.171 Sum_probs=140.7
Q ss_pred CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC------------CCCCccEEEEe
Q 039790 256 HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD------------GDSVHPRVCWH 323 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~------------~~~~v~~v~~s 323 (1395)
..+-|.+|.| ...|.+|++|+.+|+|.++.-..... ..+ .....+.. .+..+..+.|.
T Consensus 24 eadiis~vef-~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey--------~~~t~fqshepEFDYLkSleieEKinkIrw~ 93 (433)
T KOG1354|consen 24 EADIISAVEF-DHYGERLATGDKGGRVVLFEREKLYK-GEY--------NFQTEFQSHEPEFDYLKSLEIEEKINKIRWL 93 (433)
T ss_pred hhcceeeEEe-ecccceEeecCCCCeEEEeecccccc-cce--------eeeeeeeccCcccchhhhhhhhhhhhhceec
Confidence 3456889999 89999999999999999997554321 000 01111111 23456789999
Q ss_pred CCCC--eEEEEEeCCeEEEEEcCCCCccc-cccCC--C------CCc------cCccccccceEEE-cccCCCeEEEEEe
Q 039790 324 PHKQ--EILMLAIGNRILKIDSNRVGKGE-RFSAE--E------PLK------CPVDELINGVQLV-GKHDGEITELSMC 385 (1395)
Q Consensus 324 p~~~--~lla~g~~~~ii~~d~~~~~~~~-~~s~~--~------~~~------~~~~~~~~~~~~l-~~h~~~V~slafs 385 (1395)
++++ .++.++.+..+..|-....+... .+... . .++ +...-...+.+++ .+|...|++++++
T Consensus 94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 8776 67778888888888665433211 11110 0 001 1111111222333 4689999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCc---eeEEecCCCC----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKST---PLAVLRPYDG----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~---~l~tl~~h~~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
.|. ..++++ .|=+|.+|++.--. -+.-++.+.- .-|++..|+ |....++.-++..|+|+|-|++..-
T Consensus 174 sD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFh----p~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 174 SDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFH----PHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred Ccc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccC----HhHccEEEEecCCCcEEEeechhhh
Confidence 998 566665 57889999986432 2233444431 157888897 6655444445689999999998430
Q ss_pred CCCCCCCcccccEEEEEeccCccccccccccc------ceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFF------NQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~------~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
-+. .....|....... ...|| +.-+.|+.+|+++++-.. .+|++||++..
T Consensus 248 LCd--------~hsKlfEepedp~---~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme 303 (433)
T KOG1354|consen 248 LCD--------AHSKLFEEPEDPS---SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME 303 (433)
T ss_pred hhc--------chhhhhccccCCc---chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc
Confidence 000 0001111111111 11122 235889999999998653 68999999653
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=0.00021 Score=81.29 Aligned_cols=256 Identities=13% Similarity=0.159 Sum_probs=159.3
Q ss_pred CCCCEEEEEEecCCCEEEEEEc---CCeEEEEECCC--CceEEecc---CCCCeEEEEEeeCCCCEEEEEEC-CCcEEEE
Q 039790 215 DPGLVLGRQIAVNRNYICYGLK---LGNIRILNIIT--ALRSLLRG---HTQRVTDMAFFAEDVHLLASASV-DGRFFIW 285 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~---DG~IrIWd~~~--~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~-DgtV~IW 285 (1395)
+.+..+-++|++++++|.++-. +|.|-.|.++. |.+..+.. -...-+.+++ +++|++|+++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsv-d~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSV-DEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEE-CCCCCEEEEEEccCceEEEE
Confidence 4567788899999999988855 47787777765 54433221 1223378888 899998888865 4789999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCC---------CCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCC
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGD---------SVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~---------~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~ 355 (1395)
-+..... +...+....+.. ..+....+.|++++++++..+ ++++.++.. .+.-..
T Consensus 117 p~~~dG~----------l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-dg~L~~---- 181 (346)
T COG2706 117 PLQADGS----------LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD-DGKLTP---- 181 (346)
T ss_pred EcccCCc----------cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc-cCcccc----
Confidence 9976321 111222222211 115578899999988888764 777777765 221100
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceeEEec-----CCCCCCeeEE
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS----TPLAVLR-----PYDGHPVNCV 426 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg----~~l~tl~-----~h~~~~V~sV 426 (1395)
.. ...+ .-...-..|.|+|++....+.+-.+++|-+|..... ++++++. -....+...|
T Consensus 182 ----------~~-~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 182 ----------AD-PAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred ----------cc-cccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 00 1111 344567889999999433444556999999998763 2333322 1112367888
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
..+ +||++|.++......|-+|.+....+ ....+.....+.. +-+...|+++|++|++.
T Consensus 250 his----~dGrFLYasNRg~dsI~~f~V~~~~g--------~L~~~~~~~teg~---------~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 250 HIS----PDGRFLYASNRGHDSIAVFSVDPDGG--------KLELVGITPTEGQ---------FPRDFNINPSGRFLIAA 308 (346)
T ss_pred EEC----CCCCEEEEecCCCCeEEEEEEcCCCC--------EEEEEEEeccCCc---------CCccceeCCCCCEEEEE
Confidence 898 99999999765666888887764311 0112222222221 12347788999988877
Q ss_pred e-CCCeEEEEEcCC
Q 039790 507 A-KKNAIYAIHMDY 519 (1395)
Q Consensus 507 s-~Dg~I~iWdl~~ 519 (1395)
. ++..|.+|.++.
T Consensus 309 ~q~sd~i~vf~~d~ 322 (346)
T COG2706 309 NQKSDNITVFERDK 322 (346)
T ss_pred ccCCCcEEEEEEcC
Confidence 6 445688888765
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.56 E-value=7.8e-06 Score=88.45 Aligned_cols=193 Identities=12% Similarity=0.017 Sum_probs=128.0
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 227 NRNYICYGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
...+||.|+.-|...+|...+.. .+....|...|.-+.=.......+..++.|.++++.++.-+.. +..+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~--------~~~~ 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN--------KFAV 154 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc--------ccee
Confidence 34589999999999999998764 3334444443322111011223466788899999998876541 1110
Q ss_pred EEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
....-.+..+.+++++....++|....+.++.....+.. .. ........+.-.+..|
T Consensus 155 ------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey---------------~~--~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 155 ------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY---------------IE--NIYEAPTSDHGFYNSF 211 (344)
T ss_pred ------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce---------------ee--eeEecccCCCceeeee
Confidence 011122568899999999999999999988876543321 00 0123345566688999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCce-eEE----ecCCCCCCeeEEEEeecCCCCCc--EEEEEecCCCeEEEEECCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKSTP-LAV----LRPYDGHPVNCVTFLIGPHPQHI--VLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg~~-l~t----l~~h~~~~V~sV~fs~~~~pdg~--~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+..+ ..+|++..||++.|||+|.... ..+ -..|.| .+..+.|+ +.|. +|+.+- .=+.+.+.|++++
T Consensus 212 s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~c~Fs----l~g~lDLLf~sE-hfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 212 SEND-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRVCRFS----LYGLLDLLFISE-HFSRVHVVDTRNY 284 (344)
T ss_pred ccCc-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEEEEec----CCCcceEEEEec-CcceEEEEEcccC
Confidence 9887 7999999999999999997532 222 224666 99999999 5543 344433 5678999999998
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=8.8e-06 Score=98.58 Aligned_cols=231 Identities=14% Similarity=0.140 Sum_probs=143.9
Q ss_pred cceeeeeCCCCCEEEEEEecCC------------CEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEee--CCC-
Q 039790 207 TPITKYISDPGLVLGRQIAVNR------------NYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFA--EDV- 270 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg------------~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s--~dg- 270 (1395)
+.|..+.-|...|+.+.|+|-. -+||++...|.|.|||...+. +..+..|.+.|.+++|-. .+.
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence 5667778899999999998721 257888889999999999884 557778889999999942 233
Q ss_pred CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCcc
Q 039790 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKG 349 (1395)
Q Consensus 271 ~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~ 349 (1395)
.+|+.-....+|.+|+..+|.... ..........|+.+.|-+ .++.+.|..|.+...+.......
T Consensus 126 d~LlaIh~ss~lvLwntdtG~k~W--------------k~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep 191 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTGEKFW--------------KYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP 191 (1062)
T ss_pred heeEEecCCcEEEEEEccCCceee--------------ccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC
Confidence 466666777899999999998221 112223334456777744 46667777777777766543221
Q ss_pred ----ccccCCCCC--ccCccc-cccceEEEccc--CC---CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC
Q 039790 350 ----ERFSAEEPL--KCPVDE-LINGVQLVGKH--DG---EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP 417 (1395)
Q Consensus 350 ----~~~s~~~~~--~~~~~~-~~~~~~~l~~h--~~---~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~ 417 (1395)
..|....+. ..+... ...+....... .. ..-.++|+|.- +-++-...-..+.|+|++-..++.+..-
T Consensus 192 ~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~~~~l~vvpi 270 (1062)
T KOG1912|consen 192 DVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEYECCLAVVPI 270 (1062)
T ss_pred CCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchhhceeEEEEe
Confidence 111000000 000000 00000000000 00 12246778765 3333344677899999999999998877
Q ss_pred CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 418 YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 418 h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
..+ .+.-|.|.|. |....|++.- .||.+.||--+.
T Consensus 271 er~-~akfv~vlP~--~~rd~LfclH-~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 271 ERG-GAKFVDVLPD--PRRDALFCLH-SNGRLTIRVRKE 305 (1062)
T ss_pred ccC-CcceeEeccC--CCcceEEEEe-cCCeEEEEEeec
Confidence 766 7888888833 3344566654 999999997654
No 276
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=2.1e-07 Score=103.44 Aligned_cols=90 Identities=17% Similarity=0.243 Sum_probs=68.7
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce---eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP---LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~---l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
|+..|+++..-.....+|.+.+.+|+|++||.|--++ ++++.||.+ .-.-+-+. .++....++++| +|...||
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN-~~a~l~~~--v~~eeg~I~s~G-dDcytRi 372 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN-LSAYLPAH--VKEEEGSIFSVG-DDCYTRI 372 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc-cccccccc--cccccceEEEcc-CeeEEEE
Confidence 8888998877663337899999999999999998777 999999965 22222221 125666788877 9999999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
|.++.+ .++.++.....
T Consensus 373 Wsl~~g------------hLl~tipf~~s 389 (425)
T KOG2695|consen 373 WSLDSG------------HLLCTIPFPYS 389 (425)
T ss_pred EecccC------------ceeeccCCCCc
Confidence 999998 88888776553
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=2.9e-05 Score=93.02 Aligned_cols=242 Identities=12% Similarity=0.072 Sum_probs=147.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcC--CCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKV--PKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~s--p~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~ 229 (1395)
.+|-.....++.|+.||.+++..+.. +|++.- | +.+.-....-.++.||.+.|.-+.|+.+..
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~--------------g-laa~snLsmNQtLeGH~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS--------------G-LAAASNLSMNQTLEGHNASVMVVTWNENNQ 84 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCccccc--------------c-cccccccchhhhhccCcceEEEEEeccccc
Confidence 45555568899999999998887432 221111 1 000011122357889999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 230 YICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
.|-+...+|.|.||-+..|. ...-......|.+|+| ..+|..|+....||.|.|=.++... +. ++-
T Consensus 85 KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW-n~dG~kIcIvYeDGavIVGsvdGNR-Iw------gKe--- 153 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW-NLDGTKICIVYEDGAVIVGSVDGNR-IW------GKE--- 153 (1189)
T ss_pred cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEE-cCCCcEEEEEEccCCEEEEeeccce-ec------chh---
Confidence 99999999999999998872 2223335567999999 8899999999999998877766433 10 000
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc-----------ccccC--------------------C
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG-----------ERFSA--------------------E 355 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~-----------~~~s~--------------------~ 355 (1395)
+. ......+.|+++...+++.-..+.++++|....... ..|+. +
T Consensus 154 --Lk---g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd 228 (1189)
T KOG2041|consen 154 --LK---GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD 228 (1189)
T ss_pred --cc---hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC
Confidence 00 011124667776665555555555555544321100 00000 0
Q ss_pred CCC--ccC------c---cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC---------cEEEEeCCCCceeEEe
Q 039790 356 EPL--KCP------V---DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG---------TVKIWDDRKSTPLAVL 415 (1395)
Q Consensus 356 ~~~--~~~------~---~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg---------~IrIWDl~sg~~l~tl 415 (1395)
.+. .|. + .....++ +....-.|....|+++| ..|+.++.|. .|.+|. .-|..+.++
T Consensus 229 rP~lavcy~nGr~QiMR~eND~~Pv--v~dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtl 304 (1189)
T KOG2041|consen 229 RPRLAVCYANGRMQIMRSENDPEPV--VVDTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTL 304 (1189)
T ss_pred CCEEEEEEcCceehhhhhcCCCCCe--EEecccEeecceecCCC-cEEEEccCcccccCccccceEEEec-cchhheEEE
Confidence 000 000 0 0000111 11123467889999999 7899888642 466664 457888888
Q ss_pred cCCCCCCeeEEEEe
Q 039790 416 RPYDGHPVNCVTFL 429 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs 429 (1395)
+.... .|++++|-
T Consensus 305 kvpg~-~It~lsWE 317 (1189)
T KOG2041|consen 305 KVPGS-CITGLSWE 317 (1189)
T ss_pred ecCCc-eeeeeEEc
Confidence 87766 89999996
No 278
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.53 E-value=1.7e-05 Score=92.79 Aligned_cols=301 Identities=10% Similarity=0.071 Sum_probs=163.5
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC--------------
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG-------------- 280 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg-------------- 280 (1395)
..-.+..+.|||.|+||++.... .|.+|+-..+......-|. .|..+.| +|+++||++=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~-~V~~~~f-SP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHP-DVKYLDF-SPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeeecC-Cceeccc-CcccceeeeeccCCccChhhccCCcccc
Confidence 44567788899999999998764 5889987776422222244 5999999 99999999976543
Q ss_pred -cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC-Ccc---------
Q 039790 281 -RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV-GKG--------- 349 (1395)
Q Consensus 281 -tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~-~~~--------- 349 (1395)
.+++||+.+|..+. .+...........-+.|+-++.+.+-. .++.++++..... ...
T Consensus 108 n~~~vwd~~sg~iv~-----------sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~g 175 (561)
T COG5354 108 NNVFVWDIASGMIVF-----------SFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVG 175 (561)
T ss_pred CceeEEeccCceeEe-----------eccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccc
Confidence 49999999987322 222222111122246666666543333 4455555553111 110
Q ss_pred -c--cccCCC-CCccCccccc---cc--eEEEcccCC-----------CeEEEEEecCCCcEEEEEe-----------CC
Q 039790 350 -E--RFSAEE-PLKCPVDELI---NG--VQLVGKHDG-----------EITELSMCQWLTTRLASAS-----------LD 398 (1395)
Q Consensus 350 -~--~~s~~~-~~~~~~~~~~---~~--~~~l~~h~~-----------~V~slafspdg~~~LaSgs-----------~D 398 (1395)
. .|++.+ .-.+..|... ++ +.++.-... .-..+.|.+.| ++|+.-- ..
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC-ceEEEEEEEeeecccceecc
Confidence 0 011110 0000011111 11 111110011 11245666666 3333211 12
Q ss_pred CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEE-EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 399 GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT-GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 399 g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s-~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
..+.|++++...+ .....-.+ +|...+|. |+++.+++ .|-.+..+.++|++.. .. +.+
T Consensus 255 snLyl~~~~e~~i-~V~~~~~~-pVhdf~W~----p~S~~F~vi~g~~pa~~s~~~lr~N-------------l~--~~~ 313 (561)
T COG5354 255 SNLYLLRITERSI-PVEKDLKD-PVHDFTWE----PLSSRFAVISGYMPASVSVFDLRGN-------------LR--FYF 313 (561)
T ss_pred ceEEEEeeccccc-ceeccccc-cceeeeec----ccCCceeEEecccccceeecccccc-------------eE--Eec
Confidence 3466677664332 22223345 89999998 76665544 3457889999999764 22 222
Q ss_pred cCcccccccccccceEEEEeCCCCEEEEEeCC---CeEEEEEcCCCCCCCCcceeeeeeeeccccEEE-E--ecCCCCc-
Q 039790 478 KSSAELRLEDAFFNQVVALNRAGLFLLANAKK---NAIYAIHMDYGPNPASTRMDYIAEFTVTMPILS-L--TGTTTDA- 550 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D---g~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils-~--~~~~~d~- 550 (1395)
....-. .+.|+|.+++++.++-| |.|-+||... ++..+..|.+....++ | ++...+.
T Consensus 314 Pe~~rN---------T~~fsp~~r~il~agF~nl~gni~i~~~~~-------rf~~~~~~~~~n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 314 PEQKRN---------TIFFSPHERYILFAGFDNLQGNIEIFDPAG-------RFKVAGAFNGLNTSYCDWSPDGQFYDTD 377 (561)
T ss_pred CCcccc---------cccccCcccEEEEecCCccccceEEeccCC-------ceEEEEEeecCCceEeeccCCceEEEec
Confidence 222211 38889999999987755 5689998643 5666666655533221 1 1111000
Q ss_pred -C---cCCCCeEEEEEcCCCce
Q 039790 551 -S---PDGEHIVQIYCVQTQAI 568 (1395)
Q Consensus 551 -~---~s~dg~V~lWdv~t~~i 568 (1395)
. --.|..|+||++....+
T Consensus 378 ~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 378 TTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CCCcccccCcceEEEEecCchh
Confidence 0 13578899999987654
No 279
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.52 E-value=5e-06 Score=92.79 Aligned_cols=254 Identities=9% Similarity=0.114 Sum_probs=165.3
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC-CceE--EeccCCCCeEEEEEeeCCCCEEEEEECCCcE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT-ALRS--LLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~-~~~~--~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV 282 (1395)
...+..++||.+.|+....-+...-+.+.+.|.++|||--.+ ++.. ....-...++++.| ..+...|+.|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y-~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEY-VSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeee-eccceEEEEEEecceE
Confidence 355678899999999988888888899999999999996544 3322 11223457889999 7788899999999999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.-+.+...-. .....+....|...+..+.|+-....++..|.+..+. |-....+.+.
T Consensus 93 tefs~sedfn----------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~l------------ 149 (404)
T KOG1409|consen 93 TEFALSEDFN----------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRL------------ 149 (404)
T ss_pred EEEEhhhhhh----------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcc------------
Confidence 9887764320 0112344556777788888888777777777766654 3322222110
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEe--CCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD--DRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWD--l~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
.++.....- +++.|.- .+...|...|.|.+-. ...-.++.++.+|.+ .+++++|. +..+.|+
T Consensus 150 ----g~Y~~~~~~----t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~-~~~~l~Wd----~~~~~Lf 213 (404)
T KOG1409|consen 150 ----GGYNFETPA----SALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTG-EVTCLKWD----PGQRLLF 213 (404)
T ss_pred ----cceEeeccC----CCCceee---EEEEecccccceEEEEEeecCCceEEEEcCccc-ceEEEEEc----CCCcEEE
Confidence 000000000 0011100 0222333334333322 233467889999998 99999998 7777888
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
++. .|..|.+||+-... -....+.+|.+.+.. +++-.--+.|++++.||.|-+|+.+..
T Consensus 214 Sg~-~d~~vi~wdigg~~-----------g~~~el~gh~~kV~~---------l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 214 SGA-SDHSVIMWDIGGRK-----------GTAYELQGHNDKVQA---------LSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ecc-ccCceEEEeccCCc-----------ceeeeeccchhhhhh---------hhhhhhheeeeeccCCCeEEEEeccce
Confidence 755 99999999997651 223455667666543 555566788999999999999998753
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=3.6e-05 Score=91.20 Aligned_cols=291 Identities=14% Similarity=0.113 Sum_probs=156.7
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEE-----ECC-----CcEEEEEC
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASA-----SVD-----GRFFIWNI 287 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSg-----s~D-----gtV~IWdl 287 (1395)
+...+++++|+++|++. ++.|+|++...+. +.+... ..++++.| ++.|.+|.+= ..| -.+.+|++
T Consensus 37 ~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~f-SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLF-SPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred ceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeee-cccccccccccccccccCCCCCCCceeeeee
Confidence 56667999999999875 4789999998874 333322 27999999 8999988752 122 34779999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCc---------c--ccccCC-
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGK---------G--ERFSAE- 355 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~---------~--~~~s~~- 355 (1395)
.++...- .+....... .+..|+.+.. +++--.++.+..++...... . ..+++.
T Consensus 113 et~~~~s-------------~~q~k~Q~~-W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp 177 (566)
T KOG2315|consen 113 ETGVQRS-------------QIQKKMQNG-WVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP 177 (566)
T ss_pred ccceehh-------------heehhhhcC-cccccccchh-hhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCC
Confidence 8843110 000000111 2344444432 22212222333333222100 0 001111
Q ss_pred --------------CCCccCccccccc-------eEEEcccCCCeEEEEEecCCCcEEEEEeC--CC---------cEEE
Q 039790 356 --------------EPLKCPVDELING-------VQLVGKHDGEITELSMCQWLTTRLASASL--DG---------TVKI 403 (1395)
Q Consensus 356 --------------~~~~~~~~~~~~~-------~~~l~~h~~~V~slafspdg~~~LaSgs~--Dg---------~IrI 403 (1395)
.+..|+++..... .+.|. ...=..+.|++-|..+|+.++. |. ++++
T Consensus 178 ~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyl 255 (566)
T KOG2315|consen 178 EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYL 255 (566)
T ss_pred CCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEE
Confidence 1112222221100 11111 1122357777776445444433 33 5777
Q ss_pred EeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEE-EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccc
Q 039790 404 WDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT-GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAE 482 (1395)
Q Consensus 404 WDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s-~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i 482 (1395)
.++....+...+.. .| +|+++.|+ ++|+-+++ -|-.-..+.|||++. .-.++...+.-
T Consensus 256 l~t~g~s~~V~L~k-~G-PVhdv~W~----~s~~EF~VvyGfMPAkvtifnlr~---------------~~v~df~egpR 314 (566)
T KOG2315|consen 256 LATQGESVSVPLLK-EG-PVHDVTWS----PSGREFAVVYGFMPAKVTIFNLRG---------------KPVFDFPEGPR 314 (566)
T ss_pred EEecCceEEEecCC-CC-CceEEEEC----CCCCEEEEEEecccceEEEEcCCC---------------CEeEeCCCCCc
Confidence 77774455555543 34 99999999 88875544 465677899999854 33444444432
Q ss_pred ccccccccceEEEEeCCCCEEEEEeC---CCeEEEEEcCCCCCCCCcceeeeeeeeccc---------cEEEEecCCCCc
Q 039790 483 LRLEDAFFNQVVALNRAGLFLLANAK---KNAIYAIHMDYGPNPASTRMDYIAEFTVTM---------PILSLTGTTTDA 550 (1395)
Q Consensus 483 ~~~~~~~~~~~l~~S~dg~~LaSgs~---Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~---------~ils~~~~~~d~ 550 (1395)
. .+.|+|.|++|+-+|- .|.|-|||+..-+ .|..|.... .-+.++.+. ..
T Consensus 315 N---------~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K--------~i~~~~a~~tt~~eW~PdGe~flTATT-aP 376 (566)
T KOG2315|consen 315 N---------TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK--------LIAKFKAANTTVFEWSPDGEYFLTATT-AP 376 (566)
T ss_pred c---------ceEECCCCCEEEEeecCCCCCceEEEeccchh--------hccccccCCceEEEEcCCCcEEEEEec-cc
Confidence 2 4899999999988875 4679999997632 333333321 112222221 00
Q ss_pred CcCCCCeEEEEEcCCCcee
Q 039790 551 SPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 551 ~~s~dg~V~lWdv~t~~i~ 569 (1395)
.---|..++||+.....+.
T Consensus 377 RlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred cEEecCCeEEEEecCceee
Confidence 0124677999998776554
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.47 E-value=0.00013 Score=96.80 Aligned_cols=255 Identities=15% Similarity=0.184 Sum_probs=163.9
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEE----ECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC--
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRIL----NIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT-- 288 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIW----d~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~-- 288 (1395)
..+.|.++.|-++...|+.+..+|.|.++ +...........-...|.+++| +||+.+|+....+|+|.+-+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~W-SPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASW-SPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEE-CCCcCEEEEEeCCCEEEEEeccce
Confidence 45789999999999999999999999999 6666655555556778999999 9999999999999988775321
Q ss_pred --CCCCCCC--C----c----------ccccceEEE---------E-----EEecCCCCCccEEEEeCCCCeEEEEEe--
Q 039790 289 --EGPDEED--K----P----------QILGKIVVA---------I-----QILADGDSVHPRVCWHPHKQEILMLAI-- 334 (1395)
Q Consensus 289 --tg~~~~~--~----~----------~~~~~~i~~---------l-----~~~~~~~~~v~~v~~sp~~~~lla~g~-- 334 (1395)
....... + . ++.|..-.. + .... .+..-..|+|..||.+++++..
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 1100000 0 0 001100000 0 0111 3345568999999988777765
Q ss_pred -CC--eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCC
Q 039790 335 -GN--RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL---DGTVKIWDDRK 408 (1395)
Q Consensus 335 -~~--~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~---Dg~IrIWDl~s 408 (1395)
.+ ..+++|.+. |.- ..+-..-.+--.+++|.|.| ++||+.-. ...|.+|. |+
T Consensus 232 ~~~~~R~iRVy~Re-G~L-------------------~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfE-rN 289 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GEL-------------------QSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFE-RN 289 (928)
T ss_pred CCCceeEEEEECCC-ceE-------------------EeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEe-cC
Confidence 23 666777654 110 01111122233578999999 89988765 34577776 66
Q ss_pred CceeEEecC---CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc
Q 039790 409 STPLAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL 485 (1395)
Q Consensus 409 g~~l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~ 485 (1395)
|-.-..|.- +....|..+.|+ .|+..|+..- .| .|.+|-..+. .|-+.+.+.........
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn----~ds~iLAv~~-~~-~vqLWt~~NY----------HWYLKqei~~~~~~~~~- 352 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWN----SDSEILAVWL-ED-RVQLWTRSNY----------HWYLKQEIRFSSSESVN- 352 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEEC----CCCCEEEEEe-cC-CceEEEeeCC----------EEEEEEEEEccCCCCCC-
Confidence 654444432 233489999999 9999999865 44 4999998764 56677777765432111
Q ss_pred cccccceEEEEeC-CCCEEEEEeCCCeEEEEEc
Q 039790 486 EDAFFNQVVALNR-AGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 486 ~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl 517 (1395)
.+.|++ +...|...+.+|.+..+++
T Consensus 353 -------~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 353 -------FVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred -------ceEECCCCCCEEEEEecCCcEEEEEE
Confidence 266665 4556666776677765554
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=5.2e-07 Score=104.44 Aligned_cols=180 Identities=20% Similarity=0.343 Sum_probs=125.6
Q ss_pred eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeE
Q 039790 250 RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEI 329 (1395)
Q Consensus 250 ~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~l 329 (1395)
+..|.||...|..++- -.+.+-+++++.|++|++|.++.... ..-++.
T Consensus 728 L~nf~GH~~~iRai~A-idNENSFiSASkDKTVKLWSik~EgD----------------------~~~tsa--------- 775 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAA-IDNENSFISASKDKTVKLWSIKPEGD----------------------EIGTSA--------- 775 (1034)
T ss_pred eecccCcHHHhHHHHh-cccccceeeccCCceEEEEEeccccC----------------------ccccce---------
Confidence 4567899999998876 56677899999999999999985320 000000
Q ss_pred EEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 039790 330 LMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 330 la~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg 409 (1395)
| ..++..|+..|.++.|-.+. ++++++ ||.|.+||.--|
T Consensus 776 ------------------------------C--------QfTY~aHkk~i~~igfL~~l-r~i~Sc--D~giHlWDPFig 814 (1034)
T KOG4190|consen 776 ------------------------------C--------QFTYQAHKKPIHDIGFLADL-RSIASC--DGGIHLWDPFIG 814 (1034)
T ss_pred ------------------------------e--------eeEhhhccCcccceeeeecc-ceeeec--cCcceeeccccc
Confidence 1 23455799999999999876 677654 899999998888
Q ss_pred ceeEEec-C-CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccc
Q 039790 410 TPLAVLR-P-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLED 487 (1395)
Q Consensus 410 ~~l~tl~-~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~ 487 (1395)
+++..+. . ..+ .+..+...+. -+...++++++...+|+++|.+.+ .|.|.-........
T Consensus 815 r~Laq~~dapk~~-a~~~ikcl~n--v~~~iliAgcsaeSTVKl~DaRsc----------e~~~E~kVcna~~P------ 875 (1034)
T KOG4190|consen 815 RLLAQMEDAPKEG-AGGNIKCLEN--VDRHILIAGCSAESTVKLFDARSC----------EWTCELKVCNAPGP------ 875 (1034)
T ss_pred chhHhhhcCcccC-CCceeEeccc--Ccchheeeeccchhhheeeecccc----------cceeeEEeccCCCC------
Confidence 7776432 1 222 4555555411 245566666678999999999987 33443333222211
Q ss_pred cccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 488 AFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 488 ~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+++..+.|++++++-..|+|.+.|.++|+
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 1233578899999999999999999999998876
No 283
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.44 E-value=0.00034 Score=82.48 Aligned_cols=236 Identities=11% Similarity=0.081 Sum_probs=136.3
Q ss_pred EecCCCEEEEEEc----------CCeEEEEECCCCc-eEEecc----C---CCCeEEEEEeeCCCCEEEEEE-C-CCcEE
Q 039790 224 IAVNRNYICYGLK----------LGNIRILNIITAL-RSLLRG----H---TQRVTDMAFFAEDVHLLASAS-V-DGRFF 283 (1395)
Q Consensus 224 ~Spdg~~LasGs~----------DG~IrIWd~~~~~-~~~l~~----H---~~~V~slaf~s~dg~~LaSgs-~-DgtV~ 283 (1395)
+|+||++|+.+.. +..|.|||..+.. +..+.- + ...-..+++ ++||++|+... . +..|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l-s~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL-TPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE-CCCCCEEEEecCCCCCEEE
Confidence 8999998888754 7899999999974 333331 1 122346778 89999888776 3 68999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
|+|+.+++. +..+.+ .+ .. .+.-.... .+++.|.++....+-....++..
T Consensus 132 VvD~~~~kv-----------v~ei~v---p~-~~-~vy~t~e~-~~~~~~~Dg~~~~v~~d~~g~~~------------- 181 (352)
T TIGR02658 132 VVDLEGKAF-----------VRMMDV---PD-CY-HIFPTAND-TFFMHCRDGSLAKVGYGTKGNPK------------- 181 (352)
T ss_pred EEECCCCcE-----------EEEEeC---CC-Cc-EEEEecCC-ccEEEeecCceEEEEecCCCceE-------------
Confidence 999999872 222221 11 10 11111111 12233344444443322222110
Q ss_pred ccccceEEEcccCCCeEE-EEEec-CCCcEEEEEeCCCcEEEEeCCC-----CceeEEecCC-------CCCCeeEEEEe
Q 039790 364 ELINGVQLVGKHDGEITE-LSMCQ-WLTTRLASASLDGTVKIWDDRK-----STPLAVLRPY-------DGHPVNCVTFL 429 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~s-lafsp-dg~~~LaSgs~Dg~IrIWDl~s-----g~~l~tl~~h-------~~~~V~sV~fs 429 (1395)
......+.+-...+.. -.|.+ +| +++..... |+|.+.|+.. ...+..+... .+ .+.-++++
T Consensus 182 --~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~-g~q~ia~~ 256 (352)
T TIGR02658 182 --IKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG-GWQQVAYH 256 (352)
T ss_pred --EeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCC-cceeEEEc
Confidence 0001111110011000 04456 66 55555554 9999999644 3333333211 11 33448998
Q ss_pred ecCCCCCcEEEEEec---------CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 430 IGPHPQHIVLITGGP---------LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs---------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
++++++++... ..+.|.++|..++ +.+..+...... ..+++++||
T Consensus 257 ----~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~------------kvi~~i~vG~~~----------~~iavS~Dg 310 (352)
T TIGR02658 257 ----RARDRIYLLADQRAKWTHKTASRFLFVVDAKTG------------KRLRKIELGHEI----------DSINVSQDA 310 (352)
T ss_pred ----CCCCEEEEEecCCccccccCCCCEEEEEECCCC------------eEEEEEeCCCce----------eeEEECCCC
Confidence 89988887431 1258999999888 888887753321 259999999
Q ss_pred C-EEEEEe-CCCeEEEEEcCCCC
Q 039790 501 L-FLLANA-KKNAIYAIHMDYGP 521 (1395)
Q Consensus 501 ~-~LaSgs-~Dg~I~iWdl~~g~ 521 (1395)
+ +|++.. .++.|.++|..+++
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCCe
Confidence 9 777555 67889999998865
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.41 E-value=7.6e-05 Score=90.41 Aligned_cols=237 Identities=11% Similarity=0.058 Sum_probs=126.6
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 227 NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
++..++.++.+|.|+.||..+|.+.--..-.+.+.+.-. - .+..++.++.||.|+.||..+|+...........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~-v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---- 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL-V-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA---- 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE-E-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc----
Confidence 567888888999999999988864322222233332211 1 3456777888999999999998732211100000
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe-EEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI-TELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V-~slafs 385 (1395)
+. . .... ..... ++.++++..++.++.++...... .|.... ... .+...+. +-..+ .+..+.
T Consensus 178 ~~-~---~~~~-sp~~~--~~~v~~~~~~g~v~ald~~tG~~--~W~~~~------~~~-~g~~~~~-~~~~~~~~p~~~ 240 (377)
T TIGR03300 178 LT-L---RGSA-SPVIA--DGGVLVGFAGGKLVALDLQTGQP--LWEQRV------ALP-KGRTELE-RLVDVDGDPVVD 240 (377)
T ss_pred ee-e---cCCC-CCEEE--CCEEEEECCCCEEEEEEccCCCE--eeeecc------ccC-CCCCchh-hhhccCCccEEE
Confidence 00 0 0000 11111 23455555567777777533211 111000 000 0000000 00000 111121
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
+ .+++.++.+|.++.||..+|+.+...... ....... ++..++++. .||.|..+|..++
T Consensus 241 --~-~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~~------~~~~vyv~~-~~G~l~~~d~~tG-------- 299 (377)
T TIGR03300 241 --G-GQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAV------DDNRLYVTD-ADGVVVALDRRSG-------- 299 (377)
T ss_pred --C-CEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCceE------eCCEEEEEC-CCCeEEEEECCCC--------
Confidence 3 47777888999999999999888766521 2233333 345566544 8999999999888
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.+-.+....... +. .... .+..|+.++.+|.|++||..+|+
T Consensus 300 ----~~~W~~~~~~~~~-------~s-sp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 300 ----SELWKNDELKYRQ-------LT-APAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred ----cEEEccccccCCc-------cc-cCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 4443331111110 00 1111 35688888999999999988875
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.40 E-value=0.00017 Score=87.45 Aligned_cols=266 Identities=10% Similarity=-0.003 Sum_probs=144.8
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
.+.++++++.+|.|.-||..+|.+. .+.-.......... ++..++.++.||.|+.||..+|+.....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~--------- 131 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRA--------- 131 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeee---------
Confidence 4678888889999999999888543 32222222223333 4677888889999999999998732111
Q ss_pred EEEEecCCCCCcc-EEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc--eEEEcccCCCeEEE
Q 039790 306 AIQILADGDSVHP-RVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING--VQLVGKHDGEITEL 382 (1395)
Q Consensus 306 ~l~~~~~~~~~v~-~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~l~~h~~~V~sl 382 (1395)
.+ ...+. .... .++.+++...++.++.++...... .|..... ...+.... +.
T Consensus 132 --~~----~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-------------~W~~~~~~~~~~~~~~~----sp 186 (377)
T TIGR03300 132 --KL----SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-------------LWTYSRVTPALTLRGSA----SP 186 (377)
T ss_pred --cc----CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-------------eeEEccCCCceeecCCC----CC
Confidence 10 01111 1111 244667766777788887643211 1111000 00001011 11
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC---CCe-------eEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG---HPV-------NCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~---~~V-------~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+. + ..++.+..+|.+..+|.++|+.+........ ..+ .+..+ .+..+++++ .+|.++.|
T Consensus 187 ~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~------~~~~vy~~~-~~g~l~a~ 256 (377)
T TIGR03300 187 VIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV------DGGQVYAVS-YQGRVAAL 256 (377)
T ss_pred EEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE------ECCEEEEEE-cCCEEEEE
Confidence 111 2 3677788899999999999987765432110 001 11122 244566655 89999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeee
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIA 532 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~ 532 (1395)
|..++ +.+-...... . . ... .++..|+.++.||.|+.+|..+|+..- ....+.
T Consensus 257 d~~tG------------~~~W~~~~~~-~--~--------~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W--~~~~~~ 309 (377)
T TIGR03300 257 DLRSG------------RVLWKRDASS-Y--Q--------GPA--VDDNRLYVTDADGVVVALDRRSGSELW--KNDELK 309 (377)
T ss_pred ECCCC------------cEEEeeccCC-c--c--------Cce--EeCCEEEEECCCCeEEEEECCCCcEEE--cccccc
Confidence 99888 4443333111 0 0 011 245566677789999999998775210 000011
Q ss_pred eeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCcee
Q 039790 533 EFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 533 ~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~ 569 (1395)
......|.+ .+.. -.+.+.+|.|++|+..++++.
T Consensus 310 ~~~~ssp~i--~g~~-l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 310 YRQLTAPAV--VGGY-LVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CCccccCEE--ECCE-EEEEeCCCEEEEEECCCCCEE
Confidence 101112221 2221 112456889999999999875
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.36 E-value=0.00013 Score=84.47 Aligned_cols=309 Identities=16% Similarity=0.136 Sum_probs=181.0
Q ss_pred Eec-CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC-cEEEEECCCCCCCCCCccccc
Q 039790 224 IAV-NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG-RFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 224 ~Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg-tV~IWdl~tg~~~~~~~~~~~ 301 (1395)
|++ +|.+++..+. |...|.+...+-...+ +|.+.|.-..+ ..+++-++.|..|| .|-|+|..+++
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv-~~~~~VrY~r~-~~~~e~~vigt~dgD~l~iyd~~~~e---------- 393 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV-GKKGGVRYRRI-QVDPEGDVIGTNDGDKLGIYDKDGGE---------- 393 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEc-CCCCceEEEEE-ccCCcceEEeccCCceEEEEecCCce----------
Confidence 444 7899999887 7888888777654433 57778999998 77788899999999 89999999876
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCCeE
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGEIT 380 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~V~ 380 (1395)
++.+...-+.+..+..+++|..++++.....+..++..+.. .+.+ ....+-|+
T Consensus 394 -----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn---------------------v~~idkS~~~lIt 447 (668)
T COG4946 394 -----VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN---------------------VRLIDKSEYGLIT 447 (668)
T ss_pred -----EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC---------------------eeEecccccceeE
Confidence 33344445667789999999877777767777777764422 1222 23456799
Q ss_pred EEEEecCCCcEEEEEeCCC----cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe------cCCCeEE
Q 039790 381 ELSMCQWLTTRLASASLDG----TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG------PLNRELK 450 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg----~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G------s~Dg~I~ 450 (1395)
.++|||++ ++||-+--+| .|++||+..++....-. ..+ .=.+-+|. ||+++|..-+ +.|..+.
T Consensus 448 df~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta-~DfsPaFD----~d~ryLYfLs~RsLdPs~Drv~f 520 (668)
T COG4946 448 DFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA-YDFSPAFD----PDGRYLYFLSARSLDPSNDRVIF 520 (668)
T ss_pred EEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc-cccCcccC----CCCcEEEEEeccccCCCCCeeEE
Confidence 99999998 8999876665 59999998887554332 111 22344454 9999876543 1334333
Q ss_pred EEECCCC-CCCCCCCCcccccE----EEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 451 IWASAEE-EGWLLPSDIESWKC----TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 451 IWDl~tg-~~~~~~~~~~~~~~----l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
=+....- ..++.+........ .+......+...-........-+-..+....-+++-.+|.|.++.+.-.
T Consensus 521 nf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~----- 595 (668)
T COG4946 521 NFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIH----- 595 (668)
T ss_pred EEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEeecc-----
Confidence 3322211 11111111100000 0001000000000000000001122233445577778888888876431
Q ss_pred cceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCceeeecccceEEecCCCCC--eecccCCCceEEEeecCC
Q 039790 526 TRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLEN--AELEKTDSNATRAFDVAN 603 (1395)
Q Consensus 526 ~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~t 603 (1395)
.+|.. .-+ |. ..-|.+.+||+.+++..++.-..+ .+..+.|+ +.+ . +.+-+++||+..
T Consensus 596 ------Gefs~----yy~-gq------~~kG~l~~ydletkk~~e~k~nvs-s~rlS~D~s~ilv-k-~d~kl~~f~vek 655 (668)
T COG4946 596 ------GEFSQ----YYW-GQ------PEKGRLEKYDLETKKVEEYKDNVS-SFRLSSDGSKILV-K-LDGKLRLFDVEK 655 (668)
T ss_pred ------chhhh----hhc-CC------CccceEEEEecchhhHHHHhcccc-eEEEcCCCCEEEE-E-eCCeEEEEeccc
Confidence 11110 001 11 345789999999998876655443 34444444 444 4 446677999876
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=8.7e-05 Score=90.73 Aligned_cols=191 Identities=12% Similarity=0.072 Sum_probs=117.6
Q ss_pred CEEEEEEecCCCE-EEEEEcC---CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEE-EECC--CcEEEEECCCC
Q 039790 218 LVLGRQIAVNRNY-ICYGLKL---GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLAS-ASVD--GRFFIWNITEG 290 (1395)
Q Consensus 218 ~V~~va~Spdg~~-LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaS-gs~D--gtV~IWdl~tg 290 (1395)
.+..-.|+|||+. +++.+.+ ..|.++|+.++....+....+.+....| ++||+.|+. .+.+ ..|+++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~-SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDV-SKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEE-CCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5667899999985 6665443 5699999999977776666677778889 899986654 3333 46888888776
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
. ..+ +..+........|+|+|..++.+...+ .|++++... +.
T Consensus 268 ~--------------~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~------------------- 312 (419)
T PRK04043 268 T--------------LTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS------------------- 312 (419)
T ss_pred c--------------EEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-------------------
Confidence 5 111 112222233457999999888776532 345554422 11
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLD---------GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~D---------g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
...+...... ...|+||| ++|+..+.. ..|.+.|+.++.. +.+... + ......|+ |||+.
T Consensus 313 -~~rlt~~g~~--~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~-~~~~p~~S----PDG~~ 381 (419)
T PRK04043 313 -VEQVVFHGKN--NSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-G-VNQFPRFS----SDGGS 381 (419)
T ss_pred -eEeCccCCCc--CceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-C-CcCCeEEC----CCCCE
Confidence 1111111111 24899999 555554433 3678889888764 444433 2 34468899 99998
Q ss_pred EEEEecCCCe--EEEEECC
Q 039790 439 LITGGPLNRE--LKIWASA 455 (1395)
Q Consensus 439 L~s~Gs~Dg~--I~IWDl~ 455 (1395)
|+......+. |.+.++.
T Consensus 382 I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 382 IMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EEEEEccCCcEEEEEEecC
Confidence 8776533333 4455553
No 288
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=4e-07 Score=110.60 Aligned_cols=200 Identities=15% Similarity=0.149 Sum_probs=138.0
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCC--cE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDG--RF 282 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg--tV 282 (1395)
.+.++.|..|....+|++|+.+.++|+.|+..|.|++|++.+|. .....+|...|+.+.= +.+|..+++.+.-. -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~veP-s~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEP-SVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccc-cCCcceeeeeccccCchH
Confidence 46677888899999999999999999999999999999999995 6688899999999998 78888777665443 47
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.+|++..-- ... +.-..-.++.|+.....-++++..+...++|.........|
T Consensus 1170 aLW~~~s~~----------~~~-------Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty---------- 1222 (1516)
T KOG1832|consen 1170 ALWDASSTG----------GPR-------HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY---------- 1222 (1516)
T ss_pred HHhcccccc----------Ccc-------ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh----------
Confidence 789987521 000 11112236777776555566666677777776543221110
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
..+ ..+....-++..|+|++ .+++ .|| .+||+|..+.++.|..... . ..-.| ||.|..++.-
T Consensus 1223 ---lt~---~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~-~~G~F----HP~g~eVIIN 1284 (1516)
T KOG1832|consen 1223 ---LTD---TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAIHRFDQFTD-Y-GGGGF----HPSGNEVIIN 1284 (1516)
T ss_pred ---cCc---chhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHHHhhhhhhee-c-ccccc----cCCCceEEee
Confidence 000 01122233788999998 5554 466 4899999988888865432 1 12235 4999988874
Q ss_pred ecCCCeEEEEECCCC
Q 039790 443 GPLNRELKIWASAEE 457 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg 457 (1395)
. .|||+++.
T Consensus 1285 S------EIwD~RTF 1293 (1516)
T KOG1832|consen 1285 S------EIWDMRTF 1293 (1516)
T ss_pred c------hhhhhHHH
Confidence 3 59999987
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.33 E-value=0.00035 Score=92.83 Aligned_cols=221 Identities=12% Similarity=0.155 Sum_probs=141.7
Q ss_pred CCCCeEEEEEeeCCCCEEEEEECCCcEEEE----ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEE
Q 039790 256 HTQRVTDMAFFAEDVHLLASASVDGRFFIW----NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILM 331 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs~DgtV~IW----dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla 331 (1395)
..+.|.++.| -.+...|+.+..+|.|.++ +..+. .+...+.-+..+.+++|+||+..++.
T Consensus 74 ~~~~ivs~~y-l~d~~~l~~~~~~Gdi~~~~~~~~~~~~---------------~~E~VG~vd~GI~a~~WSPD~Ella~ 137 (928)
T PF04762_consen 74 PNDKIVSFQY-LADSESLCIALASGDIILVREDPDPDED---------------EIEIVGSVDSGILAASWSPDEELLAL 137 (928)
T ss_pred CCCcEEEEEe-ccCCCcEEEEECCceEEEEEccCCCCCc---------------eeEEEEEEcCcEEEEEECCCcCEEEE
Confidence 4568999999 6777888899999999999 44433 35566677888999999999998888
Q ss_pred EEeCCeEEEEEcCCC------CccccccCCCCCccC-----------cccc-----ccc------eEEEcccCCCeEEEE
Q 039790 332 LAIGNRILKIDSNRV------GKGERFSAEEPLKCP-----------VDEL-----ING------VQLVGKHDGEITELS 383 (1395)
Q Consensus 332 ~g~~~~ii~~d~~~~------~~~~~~s~~~~~~~~-----------~~~~-----~~~------~~~l~~h~~~V~sla 383 (1395)
+...+.++....... .....+.....+.+. ..+. .++ ...+. +++.-..|+
T Consensus 138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 888888877633210 000111111111110 0000 000 11222 555677899
Q ss_pred EecCCCcEEEEEeC---C---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeEEEEECC
Q 039790 384 MCQWLTTRLASASL---D---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNRELKIWASA 455 (1395)
Q Consensus 384 fspdg~~~LaSgs~---D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I~IWDl~ 455 (1395)
|-.|| .+||+.+. + +.||||+ |.|....+-+.-.+ --.+++|. |.|.+|+++-. ....|.+|.-+
T Consensus 217 WRGDG-~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~g-Le~~l~Wr----PsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 217 WRGDG-EYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDG-LEGALSWR----PSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred ECCCC-cEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCC-ccCCccCC----CCCCEEEEEEEcCCCcEEEEEecC
Confidence 99999 78888875 3 4799999 66876666665444 55789998 99999988653 23456677632
Q ss_pred CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 456 tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
| -....|...... ...-+..+.|+.|+.+|+....|. |.+|....
T Consensus 290 -G------------LrhgeF~l~~~~-----~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 290 -G------------LRHGEFTLRFDP-----EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred -C------------cEeeeEecCCCC-----CCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 2 222233332210 111224699999999999987665 99998754
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.31 E-value=0.00065 Score=77.13 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=128.5
Q ss_pred EEEEec-CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccc
Q 039790 221 GRQIAV-NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 221 ~va~Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
+..|.+ ++.++++-...+.|+.|+..++....+.... ...+++..+++ .|+.+..+ .+.++|+.+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~-------- 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGK-------- 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTE--------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCc--------
Confidence 567887 7777777778899999999998765544333 77888833564 55555554 45666988875
Q ss_pred ccceEEEEEEe-cC-CCCCccEEEEeCCCCeEEEEEeC---------CeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 300 LGKIVVAIQIL-AD-GDSVHPRVCWHPHKQEILMLAIG---------NRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 300 ~~~~i~~l~~~-~~-~~~~v~~v~~sp~~~~lla~g~~---------~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
........ .. .....+.+++.++|. ++++... +.+++++.. ++
T Consensus 72 ---~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~-------------------- 125 (246)
T PF08450_consen 72 ---VTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GK-------------------- 125 (246)
T ss_dssp ---EEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SE--------------------
T ss_pred ---EEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--Ce--------------------
Confidence 11122222 22 345567899999987 4444432 346666653 11
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-c------eeEEecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-T------PLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~------~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
+..+...-...+.|+|++++..++++-+..+.|..||+... . .+..+....+ ..-.+++. .+|++.++
T Consensus 126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~pDG~~vD----~~G~l~va 200 (246)
T PF08450_consen 126 VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG-YPDGLAVD----SDGNLWVA 200 (246)
T ss_dssp EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-EEEEEEEB----TTS-EEEE
T ss_pred EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc-CCCcceEc----CCCCEEEE
Confidence 22222234567899999999545567778889999998632 2 1222222222 47889998 88987776
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
.- ..+.|.++|.. | +.+..+.....
T Consensus 201 ~~-~~~~I~~~~p~-G------------~~~~~i~~p~~ 225 (246)
T PF08450_consen 201 DW-GGGRIVVFDPD-G------------KLLREIELPVP 225 (246)
T ss_dssp EE-TTTEEEEEETT-S------------CEEEEEE-SSS
T ss_pred Ec-CCCEEEEECCC-c------------cEEEEEcCCCC
Confidence 54 78999999987 6 78887876633
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.30 E-value=0.00014 Score=80.57 Aligned_cols=153 Identities=10% Similarity=0.102 Sum_probs=87.5
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCC---c---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITA---L---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~---~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
++.+.||+.||.- .|..|.|-..++. . ...-+.-.-.=..++| ++|+.+||.+...|+|+++|+........
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~W-SpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAW-SPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEE-CCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 4567889888774 5677887766654 1 2222222334578999 99999999999999999999986442111
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCC------CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPH------KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~------~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
.+. ....++-...+..++|-.. ...+++....+.+..+.... +....|...+ ..
T Consensus 81 ~p~--------~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~-gt~q~y~e~h-----------sf 140 (282)
T PF15492_consen 81 PPA--------MSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV-GTNQGYQENH-----------SF 140 (282)
T ss_pred Ccc--------cccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc-ccCCcceeeE-----------EE
Confidence 110 0011122233333444322 23677777777776665421 1111111100 01
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeC
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASL 397 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~ 397 (1395)
.....+...|+++.|+|.. ++|+.|+.
T Consensus 141 sf~~~yp~Gi~~~vy~p~h-~LLlVgG~ 167 (282)
T PF15492_consen 141 SFSSHYPHGINSAVYHPKH-RLLLVGGC 167 (282)
T ss_pred EecccCCCceeEEEEcCCC-CEEEEecc
Confidence 2222346789999999988 66665553
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=2.9e-05 Score=94.19 Aligned_cols=240 Identities=14% Similarity=0.191 Sum_probs=152.1
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeC-----------CCCEEEEEECCCcEEEEE
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAE-----------DVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~-----------dg~~LaSgs~DgtV~IWd 286 (1395)
-.++.|++.| +||+|+. ..|.|.|..+- .+..+.-|...|+.+.|.+. ..-+|+++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4567788877 7999987 57888888775 47788889999999999421 123688888999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC---CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH---KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~---~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
...+. .+..+.++...+..+||-+. ...++++-.+...+.+|....|..
T Consensus 96 ~~~~s--------------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-------------- 147 (1062)
T KOG1912|consen 96 FVLAS--------------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-------------- 147 (1062)
T ss_pred ehhhh--------------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--------------
Confidence 99876 33445667777788888664 334555544444444443333321
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------CceeEEecCCCC-----------C----
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-------STPLAVLRPYDG-----------H---- 421 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-------g~~l~tl~~h~~-----------~---- 421 (1395)
+...........|+.+.|.+.+.|...+..|.|.+-+.-. |+..+.-..|.. .
T Consensus 148 -----~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 148 -----FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred -----eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence 1111122335667888887767777666777777665421 233333223221 0
Q ss_pred ---------CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccce
Q 039790 422 ---------PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQ 492 (1395)
Q Consensus 422 ---------~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~ 492 (1395)
....++|+ |.-+.++... ..+.+.|+|+.-. .|+.......+...
T Consensus 223 ~~~sa~fity~a~faf~----p~~rn~lfi~-~prellv~dle~~------------~~l~vvpier~~ak--------- 276 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFS----PHWRNILFIT-FPRELLVFDLEYE------------CCLAVVPIERGGAK--------- 276 (1062)
T ss_pred CCcchhHHHHHHhhhcC----hhhhceEEEE-eccceEEEcchhh------------ceeEEEEeccCCcc---------
Confidence 11234555 5444333334 6899999999876 78877766554321
Q ss_pred EEEEeCCC--CEEEEEeCCCeEEEEEcCC
Q 039790 493 VVALNRAG--LFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 493 ~l~~S~dg--~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.+.+-|++ ..|.+.-.||.+.||--..
T Consensus 277 fv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 277 FVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 24444554 4788888999999997654
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.25 E-value=2.2e-06 Score=102.89 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=128.2
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCEEEEEE
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNYICYGL 235 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs 235 (1395)
.+..|++.+.|..|.+||..+|+-. +|.... +| .....|+|+. +++.+|+ +
T Consensus 126 ~pdVlatcsvdt~vh~wd~rSp~~p-------~ys~~~-------------------w~-s~asqVkwnyk~p~vlas-s 177 (1081)
T KOG0309|consen 126 HPDVLATCSVDTYVHAWDMRSPHRP-------FYSTSS-------------------WR-SAASQVKWNYKDPNVLAS-S 177 (1081)
T ss_pred CCcceeeccccccceeeeccCCCcc-------eeeeec-------------------cc-ccCceeeecccCcchhhh-c
Confidence 3478999999999999997766522 222211 12 2334567876 5555555 5
Q ss_pred cCCeEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 236 KLGNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 236 ~DG~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
....|+|||...| .+..+++|...|+.++|+...-..+.+++.||+|+.||......+..+.. ..
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-------------tt 244 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-------------TT 244 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-------------cc
Confidence 5678999999887 68899999999999999655566799999999999999987653222211 11
Q ss_pred CCCccEEEEeCCCCeE-EEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC----
Q 039790 314 DSVHPRVCWHPHKQEI-LMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL---- 388 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~l-la~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg---- 388 (1395)
...+..-++-|-|.-+ +.-..++.++......... ......+...+++.|.||++.|..+-|-..+
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d---------~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~ 315 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD---------LEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDG 315 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchh---------hhhccccCCcceeeecCcchHHHHHhhhhcccccC
Confidence 2333344444544322 2222233333322211100 0001123445689999999999887774322
Q ss_pred -----CcEEEEEeCCCcEEEEeCCC
Q 039790 389 -----TTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 389 -----~~~LaSgs~Dg~IrIWDl~s 408 (1395)
...|+|-|.|.++|+|-+.+
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCccceeEEEeecCCceEeeeccH
Confidence 14799999999999998754
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.00031 Score=85.91 Aligned_cols=213 Identities=12% Similarity=0.070 Sum_probs=123.1
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCE-EEEEECC---CcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHL-LASASVD---GRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~-LaSgs~D---gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
..|.+-|.+......+.... .+..-.| ++||+. ++..+.+ ..|+++|+.+++ ...+. ..
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~w-SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------------~~~lt-~~ 231 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKW-ANKEQTAFYYTSYGERKPTLYKYNLYTGK--------------KEKIA-SS 231 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEE-CCCCCcEEEEEEccCCCCEEEEEECCCCc--------------EEEEe-cC
Confidence 45666666655444343333 7888999 899984 5544443 469999998876 11121 23
Q ss_pred CCCccEEEEeCCCCeEEEEEeC---CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 314 DSVHPRVCWHPHKQEILMLAIG---NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~---~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
........|+|++..++.+... ..+++++... +. ...+..+........|+|||..
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~-g~--------------------~~~LT~~~~~d~~p~~SPDG~~ 290 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT-KT--------------------LTQITNYPGIDVNGNFVEDDKR 290 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-Cc--------------------EEEcccCCCccCccEECCCCCE
Confidence 3344457899999988766542 2355554321 11 2223333333345689999944
Q ss_pred EEEEEeCCC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC--------CeEEEEECCCCCCC
Q 039790 391 RLASASLDG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN--------RELKIWASAEEEGW 460 (1395)
Q Consensus 391 ~LaSgs~Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D--------g~I~IWDl~tg~~~ 460 (1395)
++++....| .|.++|+.++...+... . + . ....|+ |||++|+.+...+ ..|.+.|+.++
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~-g-~-~~~~~S----PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--- 359 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLNSGSVEQVVF-H-G-K-NNSSVS----TYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--- 359 (419)
T ss_pred EEEEECCCCCceEEEEECCCCCeEeCcc-C-C-C-cCceEC----CCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---
Confidence 444443444 57888888776543332 1 2 1 224899 9999998876333 36777787765
Q ss_pred CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC-C--eEEEEEcCC
Q 039790 461 LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK-N--AIYAIHMDY 519 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D-g--~I~iWdl~~ 519 (1395)
.. +.+.... . +....|+|||..|+....+ + .+++++++.
T Consensus 360 ---------~~-~~LT~~~-~---------~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 360 ---------YI-RRLTANG-V---------NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ---------Ce-EECCCCC-C---------cCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 22 2222211 1 1137899999987766533 2 355566543
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.22 E-value=6.8e-06 Score=88.64 Aligned_cols=166 Identities=17% Similarity=0.240 Sum_probs=107.7
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc--eEEec-cCCCCeEEEEEeeCCCCEEEEEEC-----C
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL--RSLLR-GHTQRVTDMAFFAEDVHLLASASV-----D 279 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~--~~~l~-~H~~~V~slaf~s~dg~~LaSgs~-----D 279 (1395)
+...+..|...-.+-+.+.-++.+++|+.||.+.+++.+.-. ...+. .|.+ -.+.++ -..+++|.+++. -
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~-~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKI-CRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccce-eecccEEecCCcceEeec
Confidence 334444444443344456667889999999999999987621 11111 1221 122333 233454544322 1
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+..++|+++..+ .+.........++++|-||..+.++++|.+++++.+|+.+...
T Consensus 159 d~~~a~~~~p~~--------------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~----------- 213 (319)
T KOG4714|consen 159 DNFYANTLDPIK--------------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA----------- 213 (319)
T ss_pred cceeeecccccc--------------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-----------
Confidence 245666665433 1111122233388999999999999999998888887765432
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~ 407 (1395)
.+...+..|+..|+.+-|+|.++..|++++.||.+-.||..
T Consensus 214 -------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 214 -------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred -------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 12456778999999999999998999999999999999965
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=6.8e-05 Score=92.19 Aligned_cols=185 Identities=16% Similarity=0.203 Sum_probs=128.8
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
+.+.|+++ .+++|+-|+.+|.|++++..... .....|+.. ..+|.+++||+.||+|.|-.+-+++..
T Consensus 40 D~is~~av--~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~--- 106 (846)
T KOG2066|consen 40 DAISCCAV--HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEI--- 106 (846)
T ss_pred hHHHHHHh--hcceeeeccccceEEEEecCCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccc---
Confidence 44555555 46899999999999999988766 555556554 457999999999999999998887621
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCC-----CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPH-----KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~-----~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
...+....+.+|+++|+ .+.++++|..| ++.....-.+.. .-..
T Consensus 107 ------------~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk------------------~~v~ 155 (846)
T KOG2066|consen 107 ------------TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK------------------DSVV 155 (846)
T ss_pred ------------eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc------------------ccee
Confidence 11233556778999997 33455555555 555433222211 0123
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-----CCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-----HPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-----~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
+....+.|.++.|. | +++|-++.+| |+|||+.+++.+..+..... ..-..+.|. +...|+. | +-
T Consensus 156 l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-----~~~~LVI-G-W~ 224 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-----DEDRLVI-G-WG 224 (846)
T ss_pred eecCccceEEEEec--C-cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec-----CCCeEEE-e-cC
Confidence 44567899999996 3 7999998888 99999999988887764432 134567885 4445555 6 78
Q ss_pred CeEEEEECCC
Q 039790 447 RELKIWASAE 456 (1395)
Q Consensus 447 g~I~IWDl~t 456 (1395)
.+|+|..++.
T Consensus 225 d~v~i~~I~~ 234 (846)
T KOG2066|consen 225 DSVKICSIKK 234 (846)
T ss_pred CeEEEEEEec
Confidence 8999999873
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.7e-05 Score=91.29 Aligned_cols=264 Identities=14% Similarity=0.110 Sum_probs=164.2
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC--C--ceEEeccCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT--A--LRSLLRGHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNITE 289 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~--~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~t 289 (1395)
|.+.|+-|.. .-.+++.+++.||.++.|.-.. | -+..++.|-+.|.+++. +.++.++.|.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~-S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV-SYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc-cccceeEeeccCcccceeEEEeec
Confidence 6666665533 3467999999999999998765 2 35567889999999998 889999999888 99999999987
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC----eEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ----EILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~----~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
-.... -+++ ...-..++|....+ .+.++.. ++.+.++|.......
T Consensus 86 ~Dmin-----------miKL----~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q--------------- 135 (558)
T KOG0882|consen 86 FDMIN-----------MIKL----VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ--------------- 135 (558)
T ss_pred cchhh-----------hccc----ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc---------------
Confidence 54211 0000 00011233332222 2333333 445555554322211
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC------CceeEEec---------CCCCCCeeEEEEe
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK------STPLAVLR---------PYDGHPVNCVTFL 429 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s------g~~l~tl~---------~h~~~~V~sV~fs 429 (1395)
.....+-|..+|.++.+.+-+ ..+++....|.|.-|.... .+....++ -.++ ...++.|+
T Consensus 136 ---~~~fkklH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt-~pts~Efs 210 (558)
T KOG0882|consen 136 ---DGYFKKLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT-EPTSFEFS 210 (558)
T ss_pred ---cceecccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCccccccccccccchhhccccccc-CccceEEc
Confidence 123344599999999999998 7899999999999998762 12222222 2223 67999999
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC-----CCC---cccccEEEEEeccC----cccccccccccceEEEEe
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLL-----PSD---IESWKCTQTLELKS----SAELRLEDAFFNQVVALN 497 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~-----~~~---~~~~~~l~tl~~h~----~~i~~~~~~~~~~~l~~S 497 (1395)
|+|..+.+.+ .|..|+++++++++-... ... .++..-+..+.... ......+.......++|.
T Consensus 211 ----p~g~qistl~-~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd 285 (558)
T KOG0882|consen 211 ----PDGAQISTLN-PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD 285 (558)
T ss_pred ----cccCcccccC-cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc
Confidence 9999999988 999999999999831100 000 00000000000000 000000111122358899
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 498 RAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 498 ~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
..|++|+-|+-=| |++.++.++.
T Consensus 286 es~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 286 ESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred CCCCEEEeeccee-EEEEEeecCe
Confidence 9999999988766 8999988753
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.19 E-value=1.1e-05 Score=87.24 Aligned_cols=130 Identities=20% Similarity=0.281 Sum_probs=85.8
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
+.|++++-+|.-.+++++|+.||.|-+||.|.. .+...++.|+. +++.|-|.| .++..|++++ .||.+--||..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~-~i~eV~FHp---k~p~~Lft~s-edGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA-EIWEVHFHP---KNPEHLFTCS-EDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh-hhhheeccC---CCchheeEec-CCCcEEEEcCC
Confidence 349999999987679999999999999999987 45567789997 999999973 4677889866 99999999987
Q ss_pred CCCCCCCC-CC-cccc---cEEEE-EeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 456 EEEGWLLP-SD-IESW---KCTQT-LELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 456 tg~~~~~~-~~-~~~~---~~l~t-l~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+.--.+-+ .+ ...| ..++. ++..+-. ..-.-..-.|.--|..|++|+.-+.||+++
T Consensus 255 ~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll-----~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 255 TTFLSISNQASVISSWLSGDPVKSRIEITSLL-----PSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CceEEecCccccccccccCCcccceEeeeccc-----cccceeeeeeeccCceEEeccccceEEEec
Confidence 43000000 00 0000 11111 1100000 000111345666789999999999999875
No 299
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.19 E-value=0.0015 Score=77.09 Aligned_cols=216 Identities=9% Similarity=0.071 Sum_probs=124.2
Q ss_pred EEEEEecCCCEEEEEE-c-CCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 220 LGRQIAVNRNYICYGL-K-LGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs-~-DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
..+++++||++|+... . +..|.|+|+.++.+. .+.- .+...-... +.+. .+ .-|.||......+.+....
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t-~e~~-~~-~~~~Dg~~~~v~~d~~g~~--- 180 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPT-ANDT-FF-MHCRDGSLAKVGYGTKGNP--- 180 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEe-cCCc-cE-EEeecCceEEEEecCCCce---
Confidence 4678999999998765 3 789999999998533 2322 222222222 2222 22 3345666666555443210
Q ss_pred cccccceEEEEEEecCCCCCc-cEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc-eEEEc
Q 039790 297 PQILGKIVVAIQILADGDSVH-PRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING-VQLVG 373 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v-~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~l~ 373 (1395)
......++......+ ..=.|.+ ++..++++ ..+.+..+|........ ...|..... ...-.
T Consensus 181 ------~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs-~eG~V~~id~~~~~~~~---------~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 181 ------KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT-YTGKIFQIDLSSGDAKF---------LPAIEAFTEAEKADG 244 (352)
T ss_pred ------EEeeeeeecCCccccccCCceEcCCCcEEEEe-cCCeEEEEecCCCccee---------cceeeeccccccccc
Confidence 111222222111110 0113455 56555544 44999999864322110 000110000 00001
Q ss_pred ccCCCeEEEEEecCCCcEEEEEe---------CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEEEe
Q 039790 374 KHDGEITELSMCQWLTTRLASAS---------LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLITGG 443 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs---------~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s~G 443 (1395)
-..+.+.-+++++++.++++... ..+.|.++|..+++.+..+..- ..+..|+|+ +||+ +|+++.
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS----~Dgkp~lyvtn 318 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVS----QDAKPLLYALS 318 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEEC----CCCCeEEEEeC
Confidence 13344455999999954444331 1257999999999999988743 279999999 9999 777665
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
..++.|.++|..++ +.+.++.
T Consensus 319 ~~s~~VsViD~~t~------------k~i~~i~ 339 (352)
T TIGR02658 319 TGDKTLYIFDAETG------------KELSSVN 339 (352)
T ss_pred CCCCcEEEEECcCC------------eEEeeec
Confidence 47889999999988 8888773
No 300
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00026 Score=87.78 Aligned_cols=207 Identities=16% Similarity=0.172 Sum_probs=132.3
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCC-eEEEEEeeCCCCEEEEEECCCc-----EEEEECCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQR-VTDMAFFAEDVHLLASASVDGR-----FFIWNITEGP 291 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~-V~slaf~s~dg~~LaSgs~Dgt-----V~IWdl~tg~ 291 (1395)
.|.| |++.+..+|.|+.+|.|.+++-.-...+.|..+... |..+-. -.+.++|++.+.|+. |+|||+..-+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~-~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYI-LNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhc-ccCceEEEEEeecCCCCceEEEEecccccC
Confidence 5555 889999999999999998887666666788888777 544443 444478999888865 8999998653
Q ss_pred CCCCCcccccceEEEEEEec----CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 292 DEEDKPQILGKIVVAIQILA----DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~----~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
.-. ...++...+.+. ....++.+++.+.+- ..+++|..++.+...-....+.. ..
T Consensus 104 ~n~-----sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDr---------------gs 162 (933)
T KOG2114|consen 104 KNN-----SPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDR---------------GS 162 (933)
T ss_pred CCC-----CcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcc---------------cc
Confidence 111 122332223333 235667788888885 45666666555555433322110 00
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-eEEecCCCCCCeeEEEEeecCCCCCcE-EEEEecC
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP-LAVLRPYDGHPVNCVTFLIGPHPQHIV-LITGGPL 445 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~-l~tl~~h~~~~V~sV~fs~~~~pdg~~-L~s~Gs~ 445 (1395)
.........++|+.++|..++...+. ...-..|.+|.+....+ +..+..|.. .+.|..|+ ++.. ++++|
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lF-v~Tt~~V~~y~l~gr~p~~~~ld~~G~-~lnCss~~-----~~t~qfIca~-- 233 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLF-VATTEQVMLYSLSGRTPSLKVLDNNGI-SLNCSSFS-----DGTYQFICAG-- 233 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEE-EEecceeEEEEecCCCcceeeeccCCc-cceeeecC-----CCCccEEEec--
Confidence 12223334578999999998844233 33445799999884443 445666655 89999997 3444 55544
Q ss_pred CCeEEEEECCCC
Q 039790 446 NRELKIWASAEE 457 (1395)
Q Consensus 446 Dg~I~IWDl~tg 457 (1395)
+..|.+||....
T Consensus 234 ~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 234 SEFLYFYDSDGR 245 (933)
T ss_pred CceEEEEcCCCc
Confidence 678999998643
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=7.9e-05 Score=85.07 Aligned_cols=84 Identities=7% Similarity=0.124 Sum_probs=70.1
Q ss_pred cceeeeeCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
+.+.-+.+|...|.+++|||..+ ++..++.+..|+|.|+++.+ ...+..| ..+|+++|.-.+.++|..|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 33445667888999999999776 78899999999999999985 5556666 789999996566788999999999999
Q ss_pred EECCCCC
Q 039790 285 WNITEGP 291 (1395)
Q Consensus 285 Wdl~tg~ 291 (1395)
||++..+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9999765
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=6.1e-05 Score=86.84 Aligned_cols=292 Identities=10% Similarity=0.010 Sum_probs=180.3
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEc-
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLK- 236 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~- 236 (1395)
...+.+++.||.++.|- .++ +-.+ ..+..+..|-+.|.+++.+-+|.++++++.
T Consensus 20 a~fiiqASlDGh~KFWk-Ks~----------isGv--------------EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWK-KSR----------ISGV--------------EFVKHFRAHLGVILSLAVSYDGWLFRSVEDP 74 (558)
T ss_pred hheEEeeecchhhhhcC-CCC----------ccce--------------eehhhhHHHHHHHHhhhccccceeEeeccCc
Confidence 36788999999999998 321 0011 234556678888999999999999999887
Q ss_pred CCeEEEEECCCCce---EEeccCCCCeEEEEEeeCCC----CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 237 LGNIRILNIITALR---SLLRGHTQRVTDMAFFAEDV----HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 237 DG~IrIWd~~~~~~---~~l~~H~~~V~slaf~s~dg----~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|..++++|+.+-.. ..+..-.+. +.|....| .+-++.-.+|.|.|+|-..+.|. ...+
T Consensus 75 Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q------------~~~f 139 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ------------DGYF 139 (558)
T ss_pred ccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc------------ccee
Confidence 99999999987421 111111122 22322233 33444556789999997765432 2234
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc--cceEEEcccCCCeEEEEEecC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI--NGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~l~~h~~~V~slafspd 387 (1395)
.+-|...|.++.+.+.+..+++. ..++++-+|.... .|..... -..|... .-+..+........++.|+|+
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSi-D~~gmVEyWs~e~----~~qfPr~--~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSI-DISGMVEYWSAEG----PFQFPRT--NLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred cccccCceEEEEeeccccceeec-cccceeEeecCCC----cccCccc--cccccccccchhhcccccccCccceEEccc
Confidence 45577788888888888654444 4445555555431 0100000 0001111 112233345667889999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEec--------------------------------CCCCCCeeEEEEeecCCCC
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLR--------------------------------PYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~--------------------------------~h~~~~V~sV~fs~~~~pd 435 (1395)
| ..+.+-+.|..||++++++|+.++.+. .|....-+.++|. ..
T Consensus 213 g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd----es 287 (558)
T KOG0882|consen 213 G-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD----ES 287 (558)
T ss_pred c-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc----CC
Confidence 9 899999999999999999987666543 1222234567776 77
Q ss_pred CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc-----------------ccccccceEEEEeC
Q 039790 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR-----------------LEDAFFNQVVALNR 498 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~-----------------~~~~~~~~~l~~S~ 498 (1395)
|.+|+.+. ==-|++.++.++ .+++.+--.. .++- ......+-.+-+.+
T Consensus 288 ~~flly~t--~~gikvin~~tn------------~v~ri~gk~e-~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~ 352 (558)
T KOG0882|consen 288 GNFLLYGT--ILGIKVINLDTN------------TVVRILGKDE-AIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQK 352 (558)
T ss_pred CCEEEeec--ceeEEEEEeecC------------eEEEEeccch-hhhhhhHHHHhhhhhccchhhhhhhccCcccccCC
Confidence 88888743 334899999887 5555442111 0000 00011223455778
Q ss_pred CCCEEEEEeCCCeEEEEE
Q 039790 499 AGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 499 dg~~LaSgs~Dg~I~iWd 516 (1395)
|..+++++-..+.+|+|.
T Consensus 353 dpt~~c~a~kk~rfylf~ 370 (558)
T KOG0882|consen 353 DPTIVCTAFKKNRFYLFR 370 (558)
T ss_pred CCeEEEeeeecceEEEEe
Confidence 888999988999999993
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.08 E-value=0.0019 Score=83.16 Aligned_cols=222 Identities=10% Similarity=0.124 Sum_probs=132.8
Q ss_pred CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC
Q 039790 257 TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN 336 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~ 336 (1395)
.+.|.++.| -.+++.|+.+..+|.|.+.|..+.. +...+..+..|.+++|+|++..++.+...+
T Consensus 68 d~~i~s~~f-l~d~~~i~v~~~~G~iilvd~et~~---------------~eivg~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 68 DDEIVSVQF-LADTNSICVITALGDIILVDPETLE---------------LEIVGNVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred CcceEEEEE-ecccceEEEEecCCcEEEEcccccc---------------eeeeeeccCceEEEeecCCCcEEEEEeCCc
Confidence 368999999 7788888889999999999888764 455666778899999999998777776666
Q ss_pred eEEEEEcCCC---Cccc---cccCCCCCccCccccccceE----------------EEc--ccCCCeEEEEEecCCCcEE
Q 039790 337 RILKIDSNRV---GKGE---RFSAEEPLKCPVDELINGVQ----------------LVG--KHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 337 ~ii~~d~~~~---~~~~---~~s~~~~~~~~~~~~~~~~~----------------~l~--~h~~~V~slafspdg~~~L 392 (1395)
.++....... .+.. .+...........+..+..+ .+. .-.+.=+.|+|--|| .++
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~f 210 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYF 210 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEE
Confidence 6665433110 0000 00000000110011000000 000 011223568999888 788
Q ss_pred EEEe----CC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeEEEEECCCCCCCCCCCC
Q 039790 393 ASAS----LD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 393 aSgs----~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
|+.. .+ +.|+|||-. |..-.+-....+ -=.+++|- |.|.++++... .|+.|.+|.-+.-
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~-l~~~LsWk----Psgs~iA~iq~~~sd~~IvffErNGL-------- 276 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEG-LQHSLSWK----PSGSLIAAIQCKTSDSDIVFFERNGL-------- 276 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccc-cccceeec----CCCCeEeeeeecCCCCcEEEEecCCc--------
Confidence 8733 23 789999965 554333333333 45789998 99999888652 4567888875432
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE---EeCCCeEEEEEcCC
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA---NAKKNAIYAIHMDY 519 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS---gs~Dg~I~iWdl~~ 519 (1395)
..+...-.+...... +..++|+.++.+|+. ......|++|.+..
T Consensus 277 -~hg~f~l~~p~de~~---------ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 277 -RHGEFVLPFPLDEKE---------VEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred -cccccccCCcccccc---------hheeeecCCCCceeeeecccccceEEEEEecC
Confidence 111111111111110 335999999999988 55566699999754
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.06 E-value=0.0013 Score=73.85 Aligned_cols=215 Identities=13% Similarity=0.050 Sum_probs=121.1
Q ss_pred CCeEEEEECCCCce-EEecc---CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 237 LGNIRILNIITALR-SLLRG---HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 237 DG~IrIWd~~~~~~-~~l~~---H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
+|.|..||..+|.. -...- ... ..+..+ .++.++++++.++.|+.||..+|+. +..... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~-----------~W~~~~--~ 65 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGG-PVATAV--PDGGRVYVASGDGNLYALDAKTGKV-----------LWRFDL--P 65 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSS-EEETEE--EETTEEEEEETTSEEEEEETTTSEE-----------EEEEEC--S
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCC-ccceEE--EeCCEEEEEcCCCEEEEEECCCCCE-----------EEEeec--c
Confidence 68999999988743 22221 222 221122 2566777889999999999999871 112222 1
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc--ccCCCeEEEEEecCCCc
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG--KHDGEITELSMCQWLTT 390 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~--~h~~~V~slafspdg~~ 390 (1395)
..... . ....++.+++...++.++.++... ++. .|.. .... ... ......+..++ .
T Consensus 66 ~~~~~-~--~~~~~~~v~v~~~~~~l~~~d~~t-G~~------------~W~~----~~~~~~~~~-~~~~~~~~~~~-~ 123 (238)
T PF13360_consen 66 GPISG-A--PVVDGGRVYVGTSDGSLYALDAKT-GKV------------LWSI----YLTSSPPAG-VRSSSSPAVDG-D 123 (238)
T ss_dssp SCGGS-G--EEEETTEEEEEETTSEEEEEETTT-SCE------------EEEE----EE-SSCTCS-TB--SEEEEET-T
T ss_pred ccccc-e--eeecccccccccceeeeEecccCC-cce------------eeee----ccccccccc-cccccCceEec-C
Confidence 11111 1 123445677777777788887433 221 0110 0000 011 11222222224 6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCC----------eeEEEEeecCCCCCcEEEEEecCCCe-EEEEECCCCCC
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHP----------VNCVTFLIGPHPQHIVLITGGPLNRE-LKIWASAEEEG 459 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~----------V~sV~fs~~~~pdg~~L~s~Gs~Dg~-I~IWDl~tg~~ 459 (1395)
.++.+..++.|..+|.++|+.+..+....... ...+.+ .++ .++.+. .++. +.+ |+.++
T Consensus 124 ~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~v~~~~-~~g~~~~~-d~~tg-- 193 (238)
T PF13360_consen 124 RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-----SDG-RVYVSS-GDGRVVAV-DLATG-- 193 (238)
T ss_dssp EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-----CTT-EEEEEC-CTSSEEEE-ETTTT--
T ss_pred EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-----ECC-EEEEEc-CCCeEEEE-ECCCC--
Confidence 78888889999999999999998887654211 123333 345 555544 6675 555 99988
Q ss_pred CCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 460 WLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 460 ~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.+-... .... ......++..|+.++.++.|++||+.+|+
T Consensus 194 ----------~~~w~~~-~~~~-----------~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 194 ----------EKLWSKP-ISGI-----------YSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ----------EEEEEEC-SS-E-----------CECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ----------CEEEEec-CCCc-----------cCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 5332222 1111 01134667777777799999999999874
No 305
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.05 E-value=0.0019 Score=75.15 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=143.9
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec-------cCCC-----CeEEEE-EeeCCCCEEEEEECCCcEEEE
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR-------GHTQ-----RVTDMA-FFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~-------~H~~-----~V~sla-f~s~dg~~LaSgs~DgtV~IW 285 (1395)
.++...+.||+.|+-. ..|.|.+||..+..+..+. .... ++.-+. |+..+|++++..+. |..+|.
T Consensus 269 YY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 269 YYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred ccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 3455567799988774 5589999999886433221 1111 111122 44568899998886 678887
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCccccccCCCCCccCccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
+...+- .+++ .+...|.-..+..+...++.+..++ .+.+++... +.
T Consensus 347 ~~~~~~--------------~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~-~e---------------- 393 (668)
T COG4946 347 RPWDGY--------------SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG-GE---------------- 393 (668)
T ss_pred CCCCCe--------------eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCC-ce----------------
Confidence 776654 2222 2233355555555555555555555 555555432 21
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+..+...-+.|.++..+++| ++++.+.....|-++|+.+|.....=+...+ -|+...|+ |+++|++-+=
T Consensus 394 ----~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~-lItdf~~~----~nsr~iAYaf- 462 (668)
T COG4946 394 ----VKRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYG-LITDFDWH----PNSRWIAYAF- 462 (668)
T ss_pred ----EEEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccc-eeEEEEEc----CCceeEEEec-
Confidence 45566677889999999999 7888888888899999999986555445555 89999998 9999999753
Q ss_pred CC----CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 445 LN----RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 445 ~D----g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
-+ ..|+|+|+.++ +.... ...... ..+-+|.+||++|.--+
T Consensus 463 P~gy~tq~Iklydm~~~------------Kiy~v-TT~ta~---------DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 463 PEGYYTQSIKLYDMDGG------------KIYDV-TTPTAY---------DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CcceeeeeEEEEecCCC------------eEEEe-cCCccc---------ccCcccCCCCcEEEEEe
Confidence 34 47999999887 43322 111111 11367889998876544
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=7.6e-06 Score=91.34 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=95.0
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-----ceeEEecCCCCCCeeEEEEeecCCC-CCcEEEEEecCCCe
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-----TPLAVLRPYDGHPVNCVTFLIGPHP-QHIVLITGGPLNRE 448 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-----~~l~tl~~h~~~~V~sV~fs~~~~p-dg~~L~s~Gs~Dg~ 448 (1395)
..+.|.++.|...+ +++..|+..|.|..+|+|.+ .+.+.+. |.. .|+++... . ++++|++++ .+|+
T Consensus 251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~S-svtslq~L----q~s~q~LmaS~-M~gk 322 (425)
T KOG2695|consen 251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDS-SVTSLQIL----QFSQQKLMASD-MTGK 322 (425)
T ss_pred cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEE-cCc-chhhhhhh----ccccceEeecc-CcCc
Confidence 56778889998877 79999999999999999864 4555554 665 89998876 3 678888866 9999
Q ss_pred EEEEECCCCCCCCCCCCcccccE---EEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKC---TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~---l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|++||++-. +| ++++.+|....... -+-..+....|++++.|-..|||.+..|.
T Consensus 323 ikLyD~R~~------------K~~~~V~qYeGHvN~~a~l-------~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 323 IKLYDLRAT------------KCKKSVMQYEGHVNLSAYL-------PAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred eeEeeehhh------------hcccceeeeeccccccccc-------ccccccccceEEEccCeeEEEEEecccCc
Confidence 999999887 67 99999998653221 13345666778889999999999998864
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.99 E-value=1.8e-05 Score=62.18 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=36.2
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILN 244 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd 244 (1395)
+++..+.+|.+.|++++|++++++|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.93 E-value=0.0063 Score=69.08 Aligned_cols=186 Identities=16% Similarity=0.135 Sum_probs=116.3
Q ss_pred EEEEEEe-cCCCEEEEEEcCCeEEEEECCCCceEEecc------CCCCeEEEEEeeCCCCEEEEEECC--------CcEE
Q 039790 219 VLGRQIA-VNRNYICYGLKLGNIRILNIITALRSLLRG------HTQRVTDMAFFAEDVHLLASASVD--------GRFF 283 (1395)
Q Consensus 219 V~~va~S-pdg~~LasGs~DG~IrIWd~~~~~~~~l~~------H~~~V~slaf~s~dg~~LaSgs~D--------gtV~ 283 (1395)
..++.+. +++. |+.+.. +.++++|..++....+.. .....+++++ .++|++.++.... |.|+
T Consensus 42 ~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v-d~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAV-DPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEE-cCCCCEEEEecCCCccccccccceE
Confidence 7788888 5654 555555 445666999885443322 3456889999 8999988877654 5577
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.++.. ++ +......-.....++|+++++.++++.. .+.|.+++....+...
T Consensus 119 ~~~~~-~~---------------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~------------ 170 (246)
T PF08450_consen 119 RIDPD-GK---------------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL------------ 170 (246)
T ss_dssp EEETT-SE---------------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE------------
T ss_pred EECCC-Ce---------------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccce------------
Confidence 77776 43 1111122334568999999988776554 5677777764322100
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
........+....+..-.+++..+| ++.++....+.|.++|.. |+.+..+..... .+++++|. .++...|+.+
T Consensus 171 -~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fg---g~~~~~L~vT 243 (246)
T PF08450_consen 171 -SNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFG---GPDGKTLYVT 243 (246)
T ss_dssp -EEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEE---STTSSEEEEE
T ss_pred -eeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEE---CCCCCEEEEE
Confidence 0000011122222347789999998 788877788999999977 998888886644 89999995 1565555543
No 309
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.91 E-value=0.00074 Score=73.57 Aligned_cols=154 Identities=12% Similarity=0.008 Sum_probs=94.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
.+..++.|.++++.++.-+..-..+....- .+.++.++ +|++++++.| ....|.+|.+... ...
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~-~~ns~~~s----nd~~~~~~Vg-ds~~Vf~y~id~~----------sey 193 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNL-TQNSLHYS----NDPSWGSSVG-DSRRVFRYAIDDE----------SEY 193 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeecccc-ceeeeEEc----CCCceEEEec-CCCcceEEEeCCc----------cce
Confidence 456677888899888765543222221111 48899999 9999999999 8889999998764 224
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEe-cCCCC
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLT-GTTTD 549 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~-~~~~d 549 (1395)
.+.+...... +.+| ...|+.....+|.+..||++.|||++....+....-..-....+....+.|+ +..+|
T Consensus 194 ~~~~~~a~t~-----D~gF---~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lD 265 (344)
T KOG4532|consen 194 IENIYEAPTS-----DHGF---YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLD 265 (344)
T ss_pred eeeeEecccC-----CCce---eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcce
Confidence 4443333221 1222 3788999999999999999999999874332111100111122223333333 22223
Q ss_pred cC--cCCCCeEEEEEcCCCce
Q 039790 550 AS--PDGEHIVQIYCVQTQAI 568 (1395)
Q Consensus 550 ~~--~s~dg~V~lWdv~t~~i 568 (1395)
.+ ..+-+.+.|-|+.++.-
T Consensus 266 LLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 266 LLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred EEEEecCcceEEEEEcccCce
Confidence 33 23456788888888754
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.84 E-value=0.0092 Score=68.38 Aligned_cols=238 Identities=15% Similarity=0.180 Sum_probs=134.8
Q ss_pred EEEEEec-CCCEEEEEEcCCe-EEEEECCCCc-eEEeccCCCCeE--EEEEeeCCCCEEEEEEC-----CCcEEEEECCC
Q 039790 220 LGRQIAV-NRNYICYGLKLGN-IRILNIITAL-RSLLRGHTQRVT--DMAFFAEDVHLLASASV-----DGRFFIWNITE 289 (1395)
Q Consensus 220 ~~va~Sp-dg~~LasGs~DG~-IrIWd~~~~~-~~~l~~H~~~V~--slaf~s~dg~~LaSgs~-----DgtV~IWdl~t 289 (1395)
.+++.+| .+..++.+-.-|+ ..+||..++. ...+....++.+ .-+| ++||++|++.=. .|.|-|||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~f-s~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVF-SPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEE-cCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 4567788 5667777777664 5678998874 323332222221 2457 999999998643 47899999994
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE-------EEEcCCCCccccccCCCCCccCc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL-------KIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii-------~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
+- ..+.-+..+.-.-..+.|.|++..++ ++.++... +++...+.....|-. ...
T Consensus 87 ~~-------------~ri~E~~s~GIGPHel~l~pDG~tLv-VANGGI~Thpd~GR~kLNl~tM~psL~~ld-----~~s 147 (305)
T PF07433_consen 87 GY-------------RRIGEFPSHGIGPHELLLMPDGETLV-VANGGIETHPDSGRAKLNLDTMQPSLVYLD-----ARS 147 (305)
T ss_pred Cc-------------EEEeEecCCCcChhhEEEcCCCCEEE-EEcCCCccCcccCceecChhhcCCceEEEe-----cCC
Confidence 32 12223333333344688999996444 44433221 122211111111100 000
Q ss_pred cccccceEEE--cccCCCeEEEEEecCCCcEEEEEeCCC-------cEEEEeCCCCceeEEec-------CCCCCCeeEE
Q 039790 363 DELINGVQLV--GKHDGEITELSMCQWLTTRLASASLDG-------TVKIWDDRKSTPLAVLR-------PYDGHPVNCV 426 (1395)
Q Consensus 363 ~~~~~~~~~l--~~h~~~V~slafspdg~~~LaSgs~Dg-------~IrIWDl~sg~~l~tl~-------~h~~~~V~sV 426 (1395)
..+.. ...+ .-|.-.|..+++..+| ..++..=..| .|-+|+ .+..+..+. .-.+ .|-+|
T Consensus 148 G~ll~-q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~-Y~gSI 222 (305)
T PF07433_consen 148 GALLE-QVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNG-YIGSI 222 (305)
T ss_pred Cceee-eeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCC-ceEEE
Confidence 11111 1223 3366789999999987 4444433332 134443 233333332 2233 79999
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
+|+ .+|.++++++..-+.+.+||..++ .++........ +.++...++ ++++.
T Consensus 223 a~~----~~g~~ia~tsPrGg~~~~~d~~tg------------~~~~~~~l~D~-----------cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 223 AAD----RDGRLIAVTSPRGGRVAVWDAATG------------RLLGSVPLPDA-----------CGVAPTDDG-FLVSS 274 (305)
T ss_pred EEe----CCCCEEEEECCCCCEEEEEECCCC------------CEeeccccCce-----------eeeeecCCc-eEEeC
Confidence 999 899999888889999999999998 77766655432 134555555 66665
Q ss_pred eCCC
Q 039790 507 AKKN 510 (1395)
Q Consensus 507 s~Dg 510 (1395)
+...
T Consensus 275 G~G~ 278 (305)
T PF07433_consen 275 GQGQ 278 (305)
T ss_pred CCcc
Confidence 5433
No 311
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.84 E-value=5.9e-05 Score=91.58 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=5.9
Q ss_pred hHHHHHHHHH
Q 039790 1002 EGKRLEASLG 1011 (1395)
Q Consensus 1002 e~~~lE~~l~ 1011 (1395)
.+++||.-|.
T Consensus 909 ~ik~Le~dlk 918 (1102)
T KOG1924|consen 909 QIKKLERDLK 918 (1102)
T ss_pred HHHHHHHHHH
Confidence 4666666654
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.82 E-value=4.9e-05 Score=59.64 Aligned_cols=39 Identities=15% Similarity=0.451 Sum_probs=36.1
Q ss_pred CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 409 STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 409 g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
|++++++.+|.+ .|++|+|+ |++.+|++++ .|++|+|||
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~----~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWS----PDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEE----TTSSEEEEEE-TTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEe----cccccceeeC-CCCEEEEEC
Confidence 468899999998 99999999 9999999977 999999997
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.81 E-value=0.0042 Score=80.18 Aligned_cols=224 Identities=14% Similarity=0.195 Sum_probs=139.6
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC----CCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI----TEGPD 292 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl----~tg~~ 292 (1395)
+.|.++.|..++.-|+.+..+|.|.+-|..+........-.+.|.+++| ++|+.+++-.+.++++.+-+- -..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aasw-S~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASW-SPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEee-cCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 6899999999999999999999999999988876666667788999999 999999999998888876442 11111
Q ss_pred CCC----C-cccccceEE---EEE----------------Eec--CCCCCccEEEEeCCCCeEEEEEe----CCeEEEEE
Q 039790 293 EED----K-PQILGKIVV---AIQ----------------ILA--DGDSVHPRVCWHPHKQEILMLAI----GNRILKID 342 (1395)
Q Consensus 293 ~~~----~-~~~~~~~i~---~l~----------------~~~--~~~~~v~~v~~sp~~~~lla~g~----~~~ii~~d 342 (1395)
... + ...+..|.. .++ ..+ ..++.-+.|+|..+|.++.+... +.+-+++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 100 0 000111111 111 000 01223456999999986665432 31444444
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCceeEE----e
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS---LDGTVKIWDDRKSTPLAV----L 415 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs---~Dg~IrIWDl~sg~~l~t----l 415 (1395)
++. +.-.. .-..-.+.=.+++|-|.| .++++-. .|+.|.+|. ++|-.-.. +
T Consensus 228 drE-g~Lns-------------------~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~ 285 (1265)
T KOG1920|consen 228 DRE-GALNS-------------------TSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPF 285 (1265)
T ss_pred ccc-chhhc-------------------ccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEe-cCCccccccccCC
Confidence 433 11000 000112233579999988 7777754 456799997 55533222 2
Q ss_pred cCCCCCCeeEEEEeecCCCCCcEEEE---EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 416 RPYDGHPVNCVTFLIGPHPQHIVLIT---GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs~~~~pdg~~L~s---~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
..... .|..++|+ .++..|++ ++ ....|++|-+.+. .|-..+.+....
T Consensus 286 p~de~-~ve~L~Wn----s~sdiLAv~~~~~-e~~~v~lwt~~Ny----------hWYLKq~l~~~~ 336 (1265)
T KOG1920|consen 286 PLDEK-EVEELAWN----SNSDILAVVTSNL-ENSLVQLWTTGNY----------HWYLKQELQFSQ 336 (1265)
T ss_pred ccccc-chheeeec----CCCCceeeeeccc-ccceEEEEEecCe----------EEEEEEEEeccc
Confidence 22332 59999999 88888877 44 5666999998764 455555555544
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.80 E-value=0.00032 Score=77.43 Aligned_cols=246 Identities=14% Similarity=0.168 Sum_probs=139.9
Q ss_pred CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC-CCCCCcccccceEEE--EEEe--cCCCCCccEEEEeCCCC--e
Q 039790 256 HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP-DEEDKPQILGKIVVA--IQIL--ADGDSVHPRVCWHPHKQ--E 328 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~-~~~~~~~~~~~~i~~--l~~~--~~~~~~v~~v~~sp~~~--~ 328 (1395)
..+.|+++.| ...|.||++|...|+|.+|.-.... |+..+ .+...-.. +... -.-+..+..+.|..+++ +
T Consensus 25 ead~ItaVef-d~tg~YlatGDkgGRVvlfer~~s~~ceykf--~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 25 EADKITAVEF-DETGLYLATGDKGGRVVLFEREKSYGCEYKF--FTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ccceeeEEEe-ccccceEeecCCCceEEEeecccccccchhh--hhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 3457999999 8889999999999999999765432 11100 00000000 0000 01123466788876654 6
Q ss_pred EEEEEeCCeEEEEEcCCCC----------ccccccCCCCC---------ccCccc---cccceEEE-cccCCCeEEEEEe
Q 039790 329 ILMLAIGNRILKIDSNRVG----------KGERFSAEEPL---------KCPVDE---LINGVQLV-GKHDGEITELSMC 385 (1395)
Q Consensus 329 lla~g~~~~ii~~d~~~~~----------~~~~~s~~~~~---------~~~~~~---~~~~~~~l-~~h~~~V~slafs 385 (1395)
++.++.+..|.+|...... .+..+...+++ +|.-.+ ...+.++. ..|...|++++|.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 8888888888888654320 00011111111 111111 11223334 5788999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCc---eeEEecCCCC----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKST---PLAVLRPYDG----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~---~l~tl~~h~~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
.|. ..++++ .|=+|.+|++..-. -+..++.|.- .-|++..|+ |....++.-++..|.|++-|++..-
T Consensus 182 sD~-et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFh----p~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 182 SDK-ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFH----PEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred Cch-heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccC----HhHcceEEEecCCCcEEehhhhhhh
Confidence 986 566664 57789999976432 2334555642 157888887 6555444444579999999998430
Q ss_pred CCCCCCCcccccEEEEEeccCccccccccccc------ceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFF------NQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~------~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
-+. .....+...-.. ....|| ..-+.|+++|++|++-+. .+|+|||++..+.
T Consensus 256 lcd--------n~~klfe~~~D~---v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 256 LCD--------NSKKLFELTIDG---VDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred hcc--------CchhhhhhccCc---ccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 000 000011100000 011111 235789999999988764 6799999987654
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.78 E-value=0.016 Score=70.72 Aligned_cols=244 Identities=13% Similarity=0.103 Sum_probs=121.9
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-EeccCCCCeEE-EEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTD-MAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~V~s-laf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
++..++.++.+|.++-+|..+|+.. .... .+.+.+ ..+ .+..++.+..+|.|+.+|..+|+....+.....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--- 191 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKV-AGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP--- 191 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccC-CCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC---
Confidence 4566778888999999999988533 2222 222322 122 245667788899999999999983322210000
Q ss_pred EEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC--CC---Cc------cCccc-cccceEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE--EP---LK------CPVDE-LINGVQLV 372 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~--~~---~~------~~~~~-~~~~~~~l 372 (1395)
.+.. ..... ..+ .++.++++..++.++.++...... .|... .+ .. ..... ...+...+
T Consensus 192 -~~~~-~~~~s--P~v----~~~~v~~~~~~g~v~a~d~~~G~~--~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~ 261 (394)
T PRK11138 192 -SLTL-RGESA--PAT----AFGGAIVGGDNGRVSAVLMEQGQL--IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA 261 (394)
T ss_pred -cccc-cCCCC--CEE----ECCEEEEEcCCCEEEEEEccCChh--hheeccccCCCccchhcccccCCCcEEECCEEEE
Confidence 0000 00000 011 123455555556666555432111 11100 00 00 00000 00011111
Q ss_pred cccCCCeEEEEE-------e----------cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCC
Q 039790 373 GKHDGEITELSM-------C----------QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 373 ~~h~~~V~slaf-------s----------pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pd 435 (1395)
....+.+.++.. . ..+ ..|+.++.||.|..+|..+|+.+.....-.+....+..+.
T Consensus 262 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~------ 334 (394)
T PRK11138 262 LAYNGNLVALDLRSGQIVWKREYGSVNDFAVDG-GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY------ 334 (394)
T ss_pred EEcCCeEEEEECCCCCEEEeecCCCccCcEEEC-CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE------
Confidence 112222222221 0 122 4666777889999999988887665432211123333332
Q ss_pred CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE
Q 039790 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW 515 (1395)
+.+|+.+. .||.|.++|..+| +.+..++........ .-.+ . +..|+.++.||.|+.+
T Consensus 335 ~g~l~v~~-~~G~l~~ld~~tG------------~~~~~~~~~~~~~~s--------~P~~-~-~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 335 NGYLVVGD-SEGYLHWINREDG------------RFVAQQKVDSSGFLS--------EPVV-A-DDKLLIQARDGTVYAI 391 (394)
T ss_pred CCEEEEEe-CCCEEEEEECCCC------------CEEEEEEcCCCccee--------CCEE-E-CCEEEEEeCCceEEEE
Confidence 34555544 8999999999988 776666543322111 1112 2 3467777889999988
Q ss_pred Ec
Q 039790 516 HM 517 (1395)
Q Consensus 516 dl 517 (1395)
++
T Consensus 392 ~~ 393 (394)
T PRK11138 392 TR 393 (394)
T ss_pred eC
Confidence 64
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.68 E-value=0.039 Score=67.27 Aligned_cols=224 Identities=9% Similarity=0.160 Sum_probs=122.9
Q ss_pred CCCCeEEEEEeeCCCCEEEEEE-CCCcEEEEECCCCCCC--CCCccc--ccceEEEEEEecCCCCCccEEEEeCCCCeEE
Q 039790 256 HTQRVTDMAFFAEDVHLLASAS-VDGRFFIWNITEGPDE--EDKPQI--LGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs-~DgtV~IWdl~tg~~~--~~~~~~--~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ll 330 (1395)
+.+.|+++.+ ..++|+..- .+..+.+--+...... .....+ .+..+..+.+.+..+..+ .+++.
T Consensus 84 ~~d~isda~~---t~~~i~~s~~~~~~lt~v~~~k~~~~~~~~~ekls~~d~ki~~~~ipg~~~rr~--------~r~l~ 152 (545)
T PF11768_consen 84 ISDTISDAVI---TDSFILLSFLEQNKLTFVQFTKKVDNSPKRPEKLSALDPKISYVDIPGPKGRRL--------ERHLS 152 (545)
T ss_pred ccccccceEe---cCCEEEEEEcCCCeEEEEEeecCCCCCccChhhccccCceEEEEECCCCCCCcc--------ceeEe
Confidence 4567888888 334555555 6777777665543210 000000 011111222222211111 12344
Q ss_pred EEEeCCeEEEEEcCCCCccccccCCCC----CccCcccccc-ceEE--EcccCCCeEEEEEecCCCcEEEEE----eCCC
Q 039790 331 MLAIGNRILKIDSNRVGKGERFSAEEP----LKCPVDELIN-GVQL--VGKHDGEITELSMCQWLTTRLASA----SLDG 399 (1395)
Q Consensus 331 a~g~~~~ii~~d~~~~~~~~~~s~~~~----~~~~~~~~~~-~~~~--l~~h~~~V~slafspdg~~~LaSg----s~Dg 399 (1395)
.....+-+++||.........|++-.. -.+.+..... .+.. +........++.|+-..++.+.+. +.+|
T Consensus 153 ~N~~qDl~ivWW~~~~~e~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g 232 (545)
T PF11768_consen 153 VNSSQDLVIVWWPSAQDEVWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKG 232 (545)
T ss_pred eccCCCEEEEEecCCCCCcCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCC
Confidence 444566778898877666555544210 0111111111 1111 111234456777876554555543 2344
Q ss_pred c----EEEEeCCCCc--eeE--EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE
Q 039790 400 T----VKIWDDRKST--PLA--VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC 471 (1395)
Q Consensus 400 ~----IrIWDl~sg~--~l~--tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~ 471 (1395)
. -.+|++...+ ++. .+ .... .|.+++++ |+...|+.|+ .||.|.+||...+
T Consensus 233 ~~~~d~ciYE~~r~klqrvsvtsi-pL~s-~v~~ca~s----p~E~kLvlGC-~DgSiiLyD~~~~-------------- 291 (545)
T PF11768_consen 233 EPSADSCIYECSRNKLQRVSVTSI-PLPS-QVICCARS----PSEDKLVLGC-EDGSIILYDTTRG-------------- 291 (545)
T ss_pred CceeEEEEEEeecCceeEEEEEEE-ecCC-cceEEecC----cccceEEEEe-cCCeEEEEEcCCC--------------
Confidence 3 3467765443 222 23 3444 79999999 9999999977 9999999998765
Q ss_pred EEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 472 TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 472 l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+..+.- ..+....++|+|+|.+++.|+..|.+.+||+..+
T Consensus 292 ~t~~~k---------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 292 VTLLAK---------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred eeeeee---------ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 111111 1223346999999999999999999999998764
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00072 Score=77.48 Aligned_cols=85 Identities=20% Similarity=0.236 Sum_probs=75.2
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
...+.+|...|.+++|+|....++..++.+.+|+|.|+++..++..+..|. .+++++|. -|....+.+|..+|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~--~~wSC~wD----lde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN--QIWSCCWD----LDERHVIYAGLQNGM 259 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC--Cceeeeec----cCCcceeEEeccCce
Confidence 456778889999999999984589999999999999999999999999884 79999998 777888888889999
Q ss_pred EEEEECCCCCC
Q 039790 449 LKIWASAEEEG 459 (1395)
Q Consensus 449 I~IWDl~tg~~ 459 (1395)
|.|||++..++
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999998743
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0025 Score=77.98 Aligned_cols=210 Identities=15% Similarity=0.152 Sum_probs=124.3
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
|...|.--+++..++||+.|+.-|.+++|+-.++....++ +-.+.+..+.. +.+..++|.|+..|.|.|+.+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v-s~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV-SSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe-cchhHhhhhhcCCceEEeehhhccCC
Confidence 3445555567888999999999999999999998644443 34455555666 77888899999999999999887431
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
...+..-.....|...|++++|++++..++++-+.|.+........ ..|. ...+.+
T Consensus 111 --------~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~---~~~~-------------~~~q~i 166 (726)
T KOG3621|consen 111 --------RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR---QAFL-------------SKSQEI 166 (726)
T ss_pred --------CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh---hhhc-------------ccccee
Confidence 1111111222336889999999999999998888888877655331 0000 012333
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
-.-++.|..+.+.. + .+|++...- ..+++...+...+.-+ ..++-.-...+|-+.......-.+.|+ . --.|+
T Consensus 167 l~~ds~IVQlD~~q-~-~LLVStl~r--~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-R-PG~Rl 240 (726)
T KOG3621|consen 167 LSEDSEIVQLDYLQ-S-YLLVSTLTR--CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-R-PGLRL 240 (726)
T ss_pred eccCcceEEeeccc-c-eehHhhhhh--hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-c-CCCce
Confidence 34567788888765 2 444444332 2344444332111111 011102345566532211133344444 3 33788
Q ss_pred EECC
Q 039790 452 WASA 455 (1395)
Q Consensus 452 WDl~ 455 (1395)
|..+
T Consensus 241 Wead 244 (726)
T KOG3621|consen 241 WEAD 244 (726)
T ss_pred EEee
Confidence 8765
No 319
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.0043 Score=73.74 Aligned_cols=96 Identities=13% Similarity=0.056 Sum_probs=61.2
Q ss_pred EEeccCCCccCcccccceeeeeCC---------CCCEEEEEEecCCCEEEEEEc-----------CCeEEEEECCCCc-e
Q 039790 192 IDVRLDGEVQPQLEVTPITKYISD---------PGLVLGRQIAVNRNYICYGLK-----------LGNIRILNIITAL-R 250 (1395)
Q Consensus 192 v~~~~~G~~~~~~~~~~i~~l~~h---------~~~V~~va~Spdg~~LasGs~-----------DG~IrIWd~~~~~-~ 250 (1395)
+.+++.|..+..+....|..+.|. .-.|.-+.|||+.+||++=+. ...++|||+.+|. .
T Consensus 216 v~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk 295 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK 295 (698)
T ss_pred EEecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh
Confidence 344444544444444444444331 245778899999999998653 2579999999994 3
Q ss_pred EEecc--CCCCeE-EEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 251 SLLRG--HTQRVT-DMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 251 ~~l~~--H~~~V~-slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
..|.. ....++ -..| +.|++++|.-..| +|.||+...
T Consensus 296 rsF~~~~~~~~~WP~frW-S~DdKy~Arm~~~-sisIyEtps 335 (698)
T KOG2314|consen 296 RSFPVIKSPYLKWPIFRW-SHDDKYFARMTGN-SISIYETPS 335 (698)
T ss_pred cceeccCCCccccceEEe-ccCCceeEEeccc-eEEEEecCc
Confidence 44433 222333 3567 8899999887775 677877654
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=5.6e-05 Score=92.62 Aligned_cols=201 Identities=10% Similarity=0.060 Sum_probs=128.3
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC-
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR- 447 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg- 447 (1395)
.+.|..|+...+|++|+-+. +.|+.|+..|.|++|++.+|.......+|.. .|+-|.-+ -||..+++++++..
T Consensus 1094 w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-avT~vePs----~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-AVTLVEPS----VDGSTQLTSSSSSSP 1167 (1516)
T ss_pred chhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcccccccccccc-cccccccc----CCcceeeeeccccCc
Confidence 45566788999999999987 8999999999999999999999999999997 99999988 89999888775655
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcc
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTR 527 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~ 527 (1395)
-..+|++... .....+|.... ++.|+.....-+.|+......+||+.++.. .
T Consensus 1168 lsaLW~~~s~-----------~~~~Hsf~ed~-------------~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~----l 1219 (1516)
T KOG1832|consen 1168 LSALWDASST-----------GGPRHSFDEDK-------------AVKFSNSLQFRALGTEADDALLYDVQTCSP----L 1219 (1516)
T ss_pred hHHHhccccc-----------cCccccccccc-------------eeehhhhHHHHHhcccccceEEEecccCcH----H
Confidence 5689998643 23344444322 466666555555566666788999998653 2
Q ss_pred eeeeeeeecc---ccEEEEecCCCCcCcCCCCeEEEEEcCCCc-ee---eecccceEEecCCCCC--eecccCCCceEEE
Q 039790 528 MDYIAEFTVT---MPILSLTGTTTDASPDGEHIVQIYCVQTQA-IQ---QYALDLSQCLPPPLEN--AELEKTDSNATRA 598 (1395)
Q Consensus 528 ~~~i~~f~~~---~~ils~~~~~~d~~~s~dg~V~lWdv~t~~-i~---~~~~~~~~cl~~s~d~--l~~~~sd~~v~~i 598 (1395)
..|+..-... ....+|... |.+.-.|| .+||+.... |. ++.... .-.|.+.+ +.+- + .|
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~--D~LIlndG--vLWDvR~~~aIh~FD~ft~~~--~G~FHP~g~eVIIN-S-----EI 1287 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPC--DTLILNDG--VLWDVRIPEAIHRFDQFTDYG--GGGFHPSGNEVIIN-S-----EI 1287 (1516)
T ss_pred HHhcCcchhhhhhccccccCCC--cceEeeCc--eeeeeccHHHHhhhhhheecc--cccccCCCceEEee-c-----hh
Confidence 2222221111 122222222 22222344 379988752 22 111111 11133332 2221 1 39
Q ss_pred eecCCCCcceeeccCCC
Q 039790 599 FDVANPDGSASLESSHG 615 (1395)
Q Consensus 599 WD~~tg~~~~~l~g~~~ 615 (1395)
||+.|...++....-.+
T Consensus 1288 wD~RTF~lLh~VP~Ldq 1304 (1516)
T KOG1832|consen 1288 WDMRTFKLLHSVPSLDQ 1304 (1516)
T ss_pred hhhHHHHHHhcCccccc
Confidence 99999998887763333
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.60 E-value=3e-05 Score=92.77 Aligned_cols=206 Identities=17% Similarity=0.251 Sum_probs=134.9
Q ss_pred CCCCEEEEEEecC--CCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEE----CCCcEEEE
Q 039790 215 DPGLVLGRQIAVN--RNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASAS----VDGRFFIW 285 (1395)
Q Consensus 215 h~~~V~~va~Spd--g~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs----~DgtV~IW 285 (1395)
....+.|+++..+ ..+++.|..+|.|-+-.+.... .....+|....++++|..-|.++||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 4567888887764 4588999999999998877642 3456678889999999777778888773 35679999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.++-.. +.....+.........++||..+...++++.....+.++|.+.....
T Consensus 135 di~s~ltv---------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~---------------- 189 (783)
T KOG1008|consen 135 DINSLLTV---------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS---------------- 189 (783)
T ss_pred ecccccCC---------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh----------------
Confidence 99987310 11122233333444558999977666666666667777776532110
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEe-CCCC-ceeEEecCCCCC----CeeEEEEeecCCCCCc-E
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWD-DRKS-TPLAVLRPYDGH----PVNCVTFLIGPHPQHI-V 438 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWD-l~sg-~~l~tl~~h~~~----~V~sV~fs~~~~pdg~-~ 438 (1395)
.. .-.+..+..+...|..++++++-+ ||.|-+|| .++- .++..+. |... .+..++|+ |... .
T Consensus 190 ---~~--svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~-~~~N~~~~~l~~~ayc----Ptrtgl 258 (783)
T KOG1008|consen 190 ---VS--SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL-RNENKKPKQLFALAYC----PTRTGL 258 (783)
T ss_pred ---hh--hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHh-hCCCCcccceeeEEec----cCCcch
Confidence 00 113345667888886657888766 99999999 4443 3333333 2221 48999999 4433 3
Q ss_pred EEEEecCCCeEEEEECCC
Q 039790 439 LITGGPLNRELKIWASAE 456 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~t 456 (1395)
+++.....++|+++|+..
T Consensus 259 la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhccCcceEEEecccc
Confidence 444444668999999864
No 322
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=0.1 Score=57.26 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=70.8
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 228 RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
..+++.|+..|.+.-.|..+|.+.--.--..+|-+-+. - -|++++.|+..|.+++.+..+|... ..+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~-v-vgdfVV~GCy~g~lYfl~~~tGs~~-----------w~f 89 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAI-V-VGDFVVLGCYSGGLYFLCVKTGSQI-----------WNF 89 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeE-E-ECCEEEEEEccCcEEEEEecchhhe-----------eee
Confidence 46788888888888888888865433333445555444 1 4788999999999999999998611 111
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVG 347 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~ 347 (1395)
... +..-.+....++++.++.+..++..+.+|..+.+
T Consensus 90 ~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 90 VIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred eeh---hhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 111 1122244566788888888889999999886543
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.011 Score=73.98 Aligned_cols=208 Identities=10% Similarity=0.101 Sum_probs=134.9
Q ss_pred CEEEEeCcCCCCCeeee--CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCC-CEEEEEEcCC-----eE
Q 039790 169 PVRLRSSKVPKGRHLIG--NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNR-NYICYGLKLG-----NI 240 (1395)
Q Consensus 169 ~Vrlwd~~sp~Gr~L~G--~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg-~~LasGs~DG-----~I 240 (1395)
.|.+|+ +..|+.+.| ++.||.+..+. ..++.|..+...|....|.-++ .+|++-+.|+ .|
T Consensus 27 ~isc~~--s~~~~vvigt~~G~V~~Ln~s~----------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 27 AISCCS--SSTGSVVIGTADGRVVILNSSF----------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLL 94 (933)
T ss_pred ceeEEc--CCCceEEEeeccccEEEecccc----------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEE
Confidence 677777 334555544 56677775542 3445566666553333344444 6787777664 58
Q ss_pred EEEECCCC-------ce--EEeccC-----CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 241 RILNIITA-------LR--SLLRGH-----TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 241 rIWd~~~~-------~~--~~l~~H-----~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|||++.- +. +.+.+| ..++.+++. +.+-..+|+|-.||.|..+.-+--+. ....
T Consensus 95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~V-s~~l~~Iv~Gf~nG~V~~~~GDi~RD----------rgsr 163 (933)
T KOG2114|consen 95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAV-SEDLKTIVCGFTNGLVICYKGDILRD----------RGSR 163 (933)
T ss_pred EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEE-EccccEEEEEecCcEEEEEcCcchhc----------cccc
Confidence 99998752 22 123332 456888999 78888999999999999885332110 1113
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
..........|+.+.+..++..++.+.....+..+...... . ...++..|+..++|.+|++
T Consensus 164 ~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p------------------~~~~ld~~G~~lnCss~~~ 224 (933)
T KOG2114|consen 164 QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-P------------------SLKVLDNNGISLNCSSFSD 224 (933)
T ss_pred eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-c------------------ceeeeccCCccceeeecCC
Confidence 45556678899999999999886666667767666654211 0 1455778899999999998
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCC
Q 039790 387 WLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDG 420 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~ 420 (1395)
.. .-|++++ +..|.+||.....+...|. ||..
T Consensus 225 ~t-~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 225 GT-YQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred CC-ccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence 65 3344444 4569999988777777777 6653
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.55 E-value=0.011 Score=67.73 Aligned_cols=210 Identities=11% Similarity=0.089 Sum_probs=118.7
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEE-----cCCeEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEEC--
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGL-----KLGNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASV-- 278 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs-----~DG~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-- 278 (1395)
.-+.|.||. .||+||++|++.= ..|.|-|||...+ .+..|..|.-.-..|.+ .+||..|+.+-.
T Consensus 48 ~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l-~pDG~tLvVANGGI 120 (305)
T PF07433_consen 48 PGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLL-MPDGETLVVANGGI 120 (305)
T ss_pred CCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEE-cCCCCEEEEEcCCC
Confidence 345667773 5999999998853 3489999999954 45677777766677888 889977776632
Q ss_pred -----CCcEEEEECCCCCCCCCC-cccccceEEEEEEe-cCCCCCccEEEEeCCCCeEEEEEeCCe------EEEEEcCC
Q 039790 279 -----DGRFFIWNITEGPDEEDK-PQILGKIVVAIQIL-ADGDSVHPRVCWHPHKQEILMLAIGNR------ILKIDSNR 345 (1395)
Q Consensus 279 -----DgtV~IWdl~tg~~~~~~-~~~~~~~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g~~~~------ii~~d~~~ 345 (1395)
.|..++ |+.+......+ ...++..+....+. ..+.-.+..+++..++.-++..-..+. ++-.....
T Consensus 121 ~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g 199 (305)
T PF07433_consen 121 ETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG 199 (305)
T ss_pred ccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC
Confidence 122222 12211100000 01122233332222 234556677788877753333322111 11111100
Q ss_pred CCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeE
Q 039790 346 VGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 346 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~s 425 (1395)
. ....+... ......-.++|-+|+|+.++....+|+-..+.+.+||..++..+....-.+ +..
T Consensus 200 ~-~~~~~~~p-------------~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D---~cG 262 (305)
T PF07433_consen 200 G-ALRLLPAP-------------EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD---ACG 262 (305)
T ss_pred C-cceeccCC-------------hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc---eee
Confidence 0 00000000 001123457899999999985455677788999999999999988876553 677
Q ss_pred EEEeecCCCCCcEEEEEecCCCeE
Q 039790 426 VTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 426 V~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
|+-. .++ +++++| .|.+
T Consensus 263 va~~----~~~-f~~ssG--~G~~ 279 (305)
T PF07433_consen 263 VAPT----DDG-FLVSSG--QGQL 279 (305)
T ss_pred eeec----CCc-eEEeCC--CccE
Confidence 7775 555 777755 4543
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.54 E-value=0.0012 Score=82.40 Aligned_cols=184 Identities=14% Similarity=0.131 Sum_probs=122.6
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEecc-CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 227 NRNYICYGLKLGNIRILNIITALRSLLRG-HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~~l~~-H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
++..++.|+....+..+|+.+.+...... ....|+-|+. ++++|.+|...|+|.+-|..+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~-------------- 208 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFE-------------- 208 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCc--------------
Confidence 45566667666677778888876544332 2334766766 67888888888999888887654
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
. ++.+..|.+.|.++...
T Consensus 209 ~--------------------------------------------------------------iht~~aHs~siSDfDv~ 226 (1118)
T KOG1275|consen 209 T--------------------------------------------------------------IHTFDAHSGSISDFDVQ 226 (1118)
T ss_pred e--------------------------------------------------------------eeeeeccccceeeeecc
Confidence 0 34556688888777664
Q ss_pred cCCCcEEEEEeC---------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC-cEEEEEecCCCeEEEEECC
Q 039790 386 QWLTTRLASASL---------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH-IVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 386 pdg~~~LaSgs~---------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg-~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
| ++|++|+. |..|+|||+|.-+.+.-+.-+.+ ..-+.|. |.- ..++++ +..|.+.+-|..
T Consensus 227 --G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~----Psl~t~~~V~-S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 227 --G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFH----PSLTTRLAVT-SQSGQFQFVDTA 296 (1118)
T ss_pred --C-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhc----ccccceEEEE-ecccceeecccc
Confidence 4 78888775 67799999998877776666654 3556665 433 344443 478999998844
Q ss_pred CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 456 tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+-.+ .....+..+... -....+.+|++|..|+.|..+|.|.+|.
T Consensus 297 ~lsN----------P~~~~~~v~p~~-------s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSN----------PPAGVKMVNPNG-------SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCC----------CccceeEEccCC-------CcceeEEecCCCceEEEecccCcEeeec
Confidence 3200 111222222111 0123588999999999999999999998
No 326
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.52 E-value=0.016 Score=65.01 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=106.1
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
.++.++++++.++.|+.||..+|.+. .+.. .+.+..... .++..++.++.|+.|+.+|..+|+. +
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~--~~~~~v~v~~~~~~l~~~d~~tG~~-----------~ 99 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV--VDGGRVYVGTSDGSLYALDAKTGKV-----------L 99 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE--EETTEEEEEETTSEEEEEETTTSCE-----------E
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee--ecccccccccceeeeEecccCCcce-----------e
Confidence 36677888889999999999998533 3322 222221112 2455677777889999999999882 2
Q ss_pred EEEEEec-CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe-EEE
Q 039790 305 VAIQILA-DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI-TEL 382 (1395)
Q Consensus 305 ~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V-~sl 382 (1395)
....... ..............+..+++...++.++.++.......-.+....+ .....+. ....+ ..+
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~---------~~~~~~~-~~~~~~~~~ 169 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP---------RGSSPIS-SFSDINGSP 169 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT----------SS--EE-EETTEEEEE
T ss_pred eeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC---------CCCccee-eecccccce
Confidence 2211111 1111111222222366677777788888888643221000000000 0000000 00111 222
Q ss_pred EEecCCCcEEEEEeCCCc-EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 383 SMCQWLTTRLASASLDGT-VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~-IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
.+. ++ .+..++.++. +.+ |+.+++.+.... .. .+..+.. .++..|+.++ .++.|.+||++++
T Consensus 170 ~~~-~~--~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~--~~~~~~~-----~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 170 VIS-DG--RVYVSSGDGRVVAV-DLATGEKLWSKP-IS--GIYSLPS-----VDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp ECC-TT--EEEEECCTSSEEEE-ETTTTEEEEEEC-SS---ECECEE-----CCCTEEEEEE-TTTEEEEEETTTT
T ss_pred EEE-CC--EEEEEcCCCeEEEE-ECCCCCEEEEec-CC--CccCCce-----eeCCEEEEEe-CCCEEEEEECCCC
Confidence 222 33 5666666775 555 999998775444 22 3444222 5677777766 8999999999998
No 327
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.51 E-value=0.046 Score=66.74 Aligned_cols=271 Identities=11% Similarity=-0.000 Sum_probs=137.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-E--eccCCC--------Ce-EEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-L--LRGHTQ--------RV-TDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~--l~~H~~--------~V-~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
.+..|++++.+|.|.-+|..+|+.. . +..... .+ ..+.. ++..++.++.+|.|+.+|..+|+...
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 3557777778888888898887532 1 111000 11 11233 35567778889999999999998443
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc--eEEE
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING--VQLV 372 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~l 372 (1395)
.+... + ........ .++.+++...++.++.+|...... . |..... ....
T Consensus 145 ~~~~~-~-------------~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~--~-----------W~~~~~~~~~~~ 195 (394)
T PRK11138 145 QTKVA-G-------------EALSRPVV--SDGLVLVHTSNGMLQALNESDGAV--K-----------WTVNLDVPSLTL 195 (394)
T ss_pred cccCC-C-------------ceecCCEE--ECCEEEEECCCCEEEEEEccCCCE--e-----------eeecCCCCcccc
Confidence 32210 0 00000011 134566666667777777643221 1 111100 0000
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC---CC---eeEEEEeecCCCCCcEEEEEecCC
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG---HP---VNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~---~~---V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
.+...++ .. + ..++.++.+|.+..+|..+|+.+..+..... .. ...+..+|. -.+..+++++ .+
T Consensus 196 ~~~~sP~----v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~--v~~~~vy~~~-~~ 265 (394)
T PRK11138 196 RGESAPA----TA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV--VVGGVVYALA-YN 265 (394)
T ss_pred cCCCCCE----EE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE--EECCEEEEEE-cC
Confidence 1111111 11 2 2466677889999999999987766542110 00 111111100 1234555545 78
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~ 526 (1395)
+.+..+|..++ +.+-+..... .. .+. .++..|+.++.+|.|+.+|..+|+..-
T Consensus 266 g~l~ald~~tG------------~~~W~~~~~~--~~---------~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W-- 318 (394)
T PRK11138 266 GNLVALDLRSG------------QIVWKREYGS--VN---------DFA--VDGGRIYLVDQNDRVYALDTRGGVELW-- 318 (394)
T ss_pred CeEEEEECCCC------------CEEEeecCCC--cc---------CcE--EECCEEEEEcCCCeEEEEECCCCcEEE--
Confidence 99999999988 3332222111 00 011 234556666778889888887764210
Q ss_pred ceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCcee
Q 039790 527 RMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 527 ~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~ 569 (1395)
....+.......|++ .+.. -.+.+.+|.|+++|..+|++.
T Consensus 319 ~~~~~~~~~~~sp~v--~~g~-l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 319 SQSDLLHRLLTAPVL--YNGY-LVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred cccccCCCcccCCEE--ECCE-EEEEeCCCEEEEEECCCCCEE
Confidence 000011111122322 1111 112466889999999999874
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.44 E-value=0.028 Score=68.45 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=62.2
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
.....|.|++++|+. ..|+.|+.||.|.+||...+..... -.. -.++.++|. |+|..+++++ .-|.|.+||
T Consensus 257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~~~--ka~-~~P~~iaWH----p~gai~~V~s-~qGelQ~FD 327 (545)
T PF11768_consen 257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTLLA--KAE-FIPTLIAWH----PDGAIFVVGS-EQGELQCFD 327 (545)
T ss_pred ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeeeee--eec-ccceEEEEc----CCCcEEEEEc-CCceEEEEE
Confidence 477889999999998 8999999999999999877743332 222 268999997 9999999866 889999999
Q ss_pred CCCC
Q 039790 454 SAEE 457 (1395)
Q Consensus 454 l~tg 457 (1395)
+...
T Consensus 328 ~ALs 331 (545)
T PF11768_consen 328 MALS 331 (545)
T ss_pred eecC
Confidence 9765
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0042 Score=77.03 Aligned_cols=190 Identities=8% Similarity=0.148 Sum_probs=120.0
Q ss_pred CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC
Q 039790 257 TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN 336 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~ 336 (1395)
.+.+.|+++ .++.|+-|..+|.|++++..... .....|... .-.|.++.+++.||
T Consensus 39 ~D~is~~av---~~~~~~~GtH~g~v~~~~~~~~~----------------~~~~~~s~~------~~~Gey~asCS~DG 93 (846)
T KOG2066|consen 39 NDAISCCAV---HDKFFALGTHRGAVYLTTCQGNP----------------KTNFDHSSS------ILEGEYVASCSDDG 93 (846)
T ss_pred hhHHHHHHh---hcceeeeccccceEEEEecCCcc----------------ccccccccc------ccCCceEEEecCCC
Confidence 356778888 57899999999999999987431 001111111 33566666666666
Q ss_pred eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC----CCcEEEEEeCCCcEEEEeCC---CC
Q 039790 337 RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW----LTTRLASASLDGTVKIWDDR---KS 409 (1395)
Q Consensus 337 ~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd----g~~~LaSgs~Dg~IrIWDl~---sg 409 (1395)
++++.-...... ...+ ....++.+|+++|+ ..+.+++|+.-| +.++.-+ ..
T Consensus 94 kv~I~sl~~~~~--------------------~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 94 KVVIGSLFTDDE--------------------ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred cEEEeeccCCcc--------------------ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 677665433221 1111 24567899999998 225899999988 7776522 11
Q ss_pred ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccc
Q 039790 410 TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAF 489 (1395)
Q Consensus 410 ~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~ 489 (1395)
..+ .+..-.| +|.++.|. |.+++-+. |--|+|||+.++ +.+..+......+ ....
T Consensus 152 ~~v-~l~~~eG-~I~~i~W~------g~lIAWan--d~Gv~vyd~~~~------------~~l~~i~~p~~~~---R~e~ 206 (846)
T KOG2066|consen 152 DSV-VLSEGEG-PIHSIKWR------GNLIAWAN--DDGVKVYDTPTR------------QRLTNIPPPSQSV---RPEL 206 (846)
T ss_pred cce-eeecCcc-ceEEEEec------CcEEEEec--CCCcEEEecccc------------ceeeccCCCCCCC---Cccc
Confidence 222 3434455 99999995 77888754 555999999887 5555555544332 2334
Q ss_pred cceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 490 FNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 490 ~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+...+.|.++.++++. +..+|+|..+..+
T Consensus 207 fpphl~W~~~~~LVIG--W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 207 FPPHLHWQDEDRLVIG--WGDSVKICSIKKR 235 (846)
T ss_pred CCCceEecCCCeEEEe--cCCeEEEEEEecc
Confidence 4456888777666553 3456888888743
No 330
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.41 E-value=0.15 Score=55.95 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=69.2
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 227 NRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
-|++++.|++.|.+++.+.++|. ...+.. -+.|.+-+-...++.+|..|+.|++.+..|.++..+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c------------- 127 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC------------- 127 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccce-------------
Confidence 47889999999999999999994 333332 233443333356899999999999999999998763
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCC
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNR 345 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~ 345 (1395)
+....-......+=+..+-...++++...+.++......
T Consensus 128 -VykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 128 -VYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred -EEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 222222222222334455455677777777777765544
No 331
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.40 E-value=0.074 Score=63.90 Aligned_cols=195 Identities=12% Similarity=0.151 Sum_probs=103.3
Q ss_pred ecCCCEEEEEE---------cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 225 AVNRNYICYGL---------KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 225 Spdg~~LasGs---------~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
|||+++++... ..+.+.|||+.++....+......+....| +|+|+.|+-.. ++.|+++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~-sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKW-SPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE--SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccccccee-ecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 56777777632 246899999999987777666778999999 99999998886 57899999877641100
Q ss_pred CcccccceEEEEEE--e-cCCCCCccEEEEeCCCCeEEEEEeCCe-EEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 296 KPQILGKIVVAIQI--L-ADGDSVHPRVCWHPHKQEILMLAIGNR-ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~--~-~~~~~~v~~v~~sp~~~~lla~g~~~~-ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
-......+...+.- . ..--..-..+.|+|++.+|+....+.. +..+.. ..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~--------------------------~~ 132 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL--------------------------PD 132 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE--------------------------EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe--------------------------ec
Confidence 00000000000000 0 000122346889999998876654432 211111 11
Q ss_pred EcccCC---CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE--Ee---cCCCCCCeeEEEEeecCCCCCc-EEEEE
Q 039790 372 VGKHDG---EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA--VL---RPYDGHPVNCVTFLIGPHPQHI-VLITG 442 (1395)
Q Consensus 372 l~~h~~---~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~--tl---~~h~~~~V~sV~fs~~~~pdg~-~L~s~ 442 (1395)
...... .+..+.+-.-|. -... -.+.|+|+.+++... .. ..-. ..+..+.|. +++. .++.-
T Consensus 133 ~~~~~~~yp~~~~~~YPk~G~-~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~-~yl~~v~W~----~d~~~l~~~~ 202 (353)
T PF00930_consen 133 YSPPDSQYPEVESIRYPKAGD-PNPR----VSLFVVDLASGKTTELDPPNSLNPQD-YYLTRVGWS----PDGKRLWVQW 202 (353)
T ss_dssp ESSSTESS-EEEEEE--BTTS----E----EEEEEEESSSTCCCEE---HHHHTSS-EEEEEEEEE----ETTEEEEEEE
T ss_pred cCCccccCCcccccccCCCCC-cCCc----eEEEEEECCCCcEEEeeeccccCCCc-cCcccceec----CCCcEEEEEE
Confidence 111111 344555433331 1111 136678988886532 11 1222 378999999 8888 44443
Q ss_pred ecCCC---eEEEEECCCC
Q 039790 443 GPLNR---ELKIWASAEE 457 (1395)
Q Consensus 443 Gs~Dg---~I~IWDl~tg 457 (1395)
.+.+. .+.++|..++
T Consensus 203 ~nR~q~~~~l~~~d~~tg 220 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTG 220 (353)
T ss_dssp EETTSTEEEEEEEEECTT
T ss_pred cccCCCEEEEEEEECCCC
Confidence 32332 4567777666
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.29 E-value=0.072 Score=60.22 Aligned_cols=218 Identities=13% Similarity=0.093 Sum_probs=116.0
Q ss_pred eeCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCceEE--eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 212 YISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITALRSL--LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~~~~--l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+.+-...+.+++|.++.+ ++|+....+.|..++..+..+.. +.+ .+..-+|++ ..++.++++--.++.+.++++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g-~~D~EgI~y-~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG-FGDYEGITY-LGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS--SSEEEEEE--STTEEEEEETTTTEEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC-CCCceeEEE-ECCCEEEEEEcCCCcEEEEEEe
Confidence 334446699999999755 66666778899888986554333 344 356889999 6777777666568999999996
Q ss_pred CCCCCCCCcccccceEEEEE--EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQ--ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~--~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
...... .......+. +...+....-.++|++.++.++++-..+-..++........ ..+......
T Consensus 95 ~~~~~~-----~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~--------~~~~~~~~~ 161 (248)
T PF06977_consen 95 DDTTSL-----DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG--------FDLFVSDDQ 161 (248)
T ss_dssp ---TT-------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S--------S--EEEE-H
T ss_pred cccccc-----chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc--------cceeecccc
Confidence 543110 011112222 22234455778999999999988876654333332211000 000000000
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC--------CCeeEEEEeecCCCCCcE
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG--------HPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~--------~~V~sV~fs~~~~pdg~~ 438 (1395)
........-..+.+++|+|..+++++....+..|.++| .+|+.+..+.-..+ ...-.|+|. ++|..
T Consensus 162 -~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d----~~G~L 235 (248)
T PF06977_consen 162 -DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD----PDGNL 235 (248)
T ss_dssp -HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-----TT--E
T ss_pred -ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC----CCCCE
Confidence 00001123345789999998878888888999999999 78887776653321 146789998 88877
Q ss_pred EEEEecCCCeEEEE
Q 039790 439 LITGGPLNRELKIW 452 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IW 452 (1395)
.++ + .-+..++|
T Consensus 236 YIv-s-EpNlfy~f 247 (248)
T PF06977_consen 236 YIV-S-EPNLFYRF 247 (248)
T ss_dssp EEE-E-TTTEEEEE
T ss_pred EEE-c-CCceEEEe
Confidence 766 4 55555444
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.0042 Score=76.54 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=62.6
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEE-eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSL-LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~-l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
+++++|+|..-.|+.|-.-|.+.+|...+.+.++ ...|...|..+.| +++|..|+|+..-|.|.+|.....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~w-S~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDW-SHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEe-cCCCCeEEEcCCCceeEEEEeeec
Confidence 4568899999999999999999999998876554 4569999999999 999999999999999999998743
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.26 E-value=0.0022 Score=80.11 Aligned_cols=147 Identities=14% Similarity=0.227 Sum_probs=104.6
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECC---------CcEEEEECCCCCCC
Q 039790 224 IAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVD---------GRFFIWNITEGPDE 293 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---------gtV~IWdl~tg~~~ 293 (1395)
.-.+++++++|...|+|.+-|.++. .++++..|++.|.++.. .|++|++||.. .-|+|||++.-+.+
T Consensus 183 mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 183 MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred EEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 3457899999999999999999986 58899999999999877 79999999874 45799999986622
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCC-eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
. .+.+..+. .-+.|+|.=. .++++...+....++....... ..++..+
T Consensus 260 ~-----------PI~~~~~P----~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP----------------~~~~~~v 308 (1118)
T KOG1275|consen 260 S-----------PIQFPYGP----QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP----------------PAGVKMV 308 (1118)
T ss_pred C-----------CcccccCc----hhhhhcccccceEEEEecccceeeccccccCCC----------------ccceeEE
Confidence 1 11111111 2356666544 4455555666666665433221 1113334
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWD 405 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWD 405 (1395)
......+..+++++.+ ..++.|..+|.|.+|-
T Consensus 309 ~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 309 NPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 4445569999999998 8999999999999997
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.25 E-value=0.028 Score=72.47 Aligned_cols=150 Identities=11% Similarity=0.174 Sum_probs=96.2
Q ss_pred CCCCEEEEE-ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-----CCCeEEEEEeCCeEEEE
Q 039790 268 EDVHLLASA-SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-----HKQEILMLAIGNRILKI 341 (1395)
Q Consensus 268 ~dg~~LaSg-s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-----~~~~lla~g~~~~ii~~ 341 (1395)
.+.++|+.- .....|+-.|+..|+ ++..+.+.. ...+..++-.. .....|++-+++.+++|
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GK-----------VV~eW~~~~--~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGK-----------VVEEWKVHD--DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCc-----------EEEEeecCC--CcceeEecccccccccCCCceEEEECCCceEEe
Confidence 344454443 455788889999887 333333221 12233332221 13457888888999999
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE-EecCCCC
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA-VLRPYDG 420 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~ 420 (1395)
|.+-.+.... +.. .+.+ .......|++-+.+| +||.|+.+|.||+|| +.|..-+ .|.+-..
T Consensus 558 DpR~~~~k~v-----------~~~---~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 558 DPRLSGNKLV-----------DSQ---SKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYD-RLGKRAKTALPGLGD 619 (794)
T ss_pred ccCCCCCcee-----------ecc---cccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeec-ccchhhhhcCCCCCC
Confidence 9875432100 100 1111 244567888888776 899999999999999 4453333 4445554
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
+|..|+.+ .||+||+++| +..|.|++..
T Consensus 620 -pI~~iDvt----~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 620 -PIIGIDVT----ADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred -CeeEEEec----CCCcEEEEee--cceEEEEEEe
Confidence 99999999 9999999977 7889999874
No 336
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.065 Score=65.58 Aligned_cols=190 Identities=16% Similarity=0.172 Sum_probs=104.1
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-------eEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-------RSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-------~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
+.+..+.+..+.|.++.|+.+.+++ .-..||.+++||+.+.. .....-....|....| ..+|-.+++ .+
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~-~~~GivvLt--~~ 146 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWF-YKNGIVVLT--GN 146 (410)
T ss_pred CEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCccccccccccc-CCCCEEEEC--CC
Confidence 4555555555899999999876655 55689999999987544 1111111222333344 335533333 34
Q ss_pred CcEEEEECCCCC-CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 280 GRFFIWNITEGP-DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 280 gtV~IWdl~tg~-~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
+.|++.+-.... .....+...+. ...............++.+....+....++.+..++.....
T Consensus 147 ~~~~~v~n~~~~~~~~~~~~~p~~----~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~----------- 211 (410)
T PF04841_consen 147 NRFYVVNNIDEPVKLRRLPEIPGL----WTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK----------- 211 (410)
T ss_pred CeEEEEeCccccchhhccccCCCc----ccccccccccccceEeecCcceEEEEecCCEEEEEEccccc-----------
Confidence 445444322211 00000000000 00000000110013345555555666666666656543210
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
.+ ...+.+..|++||+| ++||.-..+|.+.|+...-.+.+..+..........+.|+
T Consensus 212 ------------~i-~~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 212 ------------QI-DSDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred ------------cc-cCCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 01 134579999999999 7999999999999998776777777765533367888887
No 337
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.23 E-value=0.075 Score=64.41 Aligned_cols=245 Identities=13% Similarity=0.111 Sum_probs=120.8
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCC--------------------------------------------ceEEe
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITA--------------------------------------------LRSLL 253 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--------------------------------------------~~~~l 253 (1395)
.|+.+.|+.+..-|++|...|.|.||.+... ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4778889998888999999999988864321 01122
Q ss_pred ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec-----CCCCCccEEEEeC----
Q 039790 254 RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-----DGDSVHPRVCWHP---- 324 (1395)
Q Consensus 254 ~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-----~~~~~v~~v~~sp---- 324 (1395)
....+.|++++. + |--+++.|..+|.+.|.|++... .+....+.. .....++++.|.-
T Consensus 83 ~~~~g~vtal~~-S-~iGFvaigy~~G~l~viD~RGPa-----------vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 83 DAKQGPVTALKN-S-DIGFVAIGYESGSLVVIDLRGPA-----------VIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTE-----------EEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred eccCCcEeEEec-C-CCcEEEEEecCCcEEEEECCCCe-----------EEeeccccccccccccccCeeEEEEEEEecC
Confidence 334689999998 4 56699999999999999997544 121111111 1334455666641
Q ss_pred -CC---CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE-EecCCC----------
Q 039790 325 -HK---QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS-MCQWLT---------- 389 (1395)
Q Consensus 325 -~~---~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla-fspdg~---------- 389 (1395)
++ -.++++...|.++.|...-...+ .|. . ........+.+.|..+. |+.+.+
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g-~f~------v------~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~ 216 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNG-RFS------V------QFAGATTNHDSPILSIIPINADTGESALATISAM 216 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG--EE------E------EEEEEE--SS----EEEEEETTT--B-B-BHHHH
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCC-ceE------E------EEeeccccCCCceEEEEEEECCCCCcccCchhHh
Confidence 11 14555566677766655321111 111 0 00111223555665555 322211
Q ss_pred ----------cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecC-CCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 390 ----------TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP-HPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 390 ----------~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~-~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
.+++. ..+..|||+...+.+..+......- .+..++|.+.. ...+..|++-- .||.|++|.+-.-
T Consensus 217 ~~l~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~L- 292 (395)
T PF08596_consen 217 QGLSKGISIPGYVVV-VSESDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSL- 292 (395)
T ss_dssp HGGGGT----EEEEE-E-SSEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--
T ss_pred hccccCCCcCcEEEE-EcccceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCc-
Confidence 13444 4467799999988887766552211 34445553100 02345555555 8999999999876
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
+.+..+........ . ......++.+|.+++..+.
T Consensus 293 -----------kei~~~~l~~~~d~----~-~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 293 -----------KEIKSVSLPPPLDS----R-RLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp ------------EEEEEE-SS---H----H-HHTT-EE-TTS-EEEE-SS
T ss_pred -----------hHhhcccCCCcccc----c-cccccEECCCCCEEEEeCc
Confidence 77777766432111 1 1113566778877665543
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.16 E-value=0.15 Score=61.36 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=42.3
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec--c-------C---------CCCeEEEEEeeCCCCEEEEEE
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR--G-------H---------TQRVTDMAFFAEDVHLLASAS 277 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~--~-------H---------~~~V~slaf~s~dg~~LaSgs 277 (1395)
...+....|||+|++||... ++.|.+++..++....+. | - -+.-..+-| +||+++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W-Spd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW-SPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE--TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEE-CCCCCEEEEEE
Confidence 46677889999999999986 579999998877433222 2 0 112345778 99999988875
Q ss_pred CC
Q 039790 278 VD 279 (1395)
Q Consensus 278 ~D 279 (1395)
.|
T Consensus 120 ~d 121 (353)
T PF00930_consen 120 FD 121 (353)
T ss_dssp EE
T ss_pred EC
Confidence 54
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.15 E-value=0.12 Score=64.71 Aligned_cols=114 Identities=14% Similarity=0.042 Sum_probs=77.1
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCC-----CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRK-----STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~s-----g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
++| ++... .+++|.++|.++ ...+..+.--. ....|.++ |||++++++|..+.+|.|.|+.+.+.+
T Consensus 286 kdG-K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vS----PDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 286 KAG-KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTS----PDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred hCC-CEEEE--CCCEEEEEECCccccCCcceEEEEECCC--CccceEEC----CCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 455 44443 367899999998 35555555333 68999999 999999999988999999999876211
Q ss_pred CCCCCcc-cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 461 LLPSDIE-SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 461 ~~~~~~~-~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+. ...+ ....+.+...-.+. ....|..+|....+-.-|..|-.|++..
T Consensus 357 ~~-~~~~~~~~vvaevevGlGP----------LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FD-GKIKPRDAVVAEPELGLGP----------LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hh-ccCCccceEEEeeccCCCc----------ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 10 0000 01122333321111 1478899999888888999999999976
No 340
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.07 E-value=0.29 Score=58.12 Aligned_cols=244 Identities=11% Similarity=0.067 Sum_probs=104.0
Q ss_pred EEEecCCCEEEEEEc-C--CeEEEEECCCCceEEeccCCCC-eEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 222 RQIAVNRNYICYGLK-L--GNIRILNIITALRSLLRGHTQR-VTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 222 va~Spdg~~LasGs~-D--G~IrIWd~~~~~~~~l~~H~~~-V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
-+|..||+.|+.++. | ..+.+.|+.++.+..|..+.+. .....+ +++++.|+-......|+-.|+.+.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~-s~~~~~~~Yv~~~~~l~~vdL~T~e~----- 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFL-SPDDRALYYVKNGRSLRRVDLDTLEE----- 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE--TTSSEEEEEETTTEEEEEETTT--E-----
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEE-ecCCCeEEEEECCCeEEEEECCcCcE-----
Confidence 357889977766654 4 5677789999988888766532 334555 67778877666667899999998761
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCC-CCeEEEEEeCCeEEEEEcCCCCc----cccccCCCCCccCccccccc-eEE
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPH-KQEILMLAIGNRILKIDSNRVGK----GERFSAEEPLKCPVDELING-VQL 371 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~-~~~lla~g~~~~ii~~d~~~~~~----~~~~s~~~~~~~~~~~~~~~-~~~ 371 (1395)
-.++...+..+-...|..+ +...+++.. +..-+.....+ .+.|......++..-++..+ ...
T Consensus 115 ---------~~vy~~p~~~~g~gt~v~n~d~t~~~g~e---~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 115 ---------RVVYEVPDDWKGYGTWVANSDCTKLVGIE---ISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp ---------EEEEE--TTEEEEEEEEE-TTSSEEEEEE---EEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred ---------EEEEECCcccccccceeeCCCccEEEEEE---EeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 1222222333333444322 222222221 00000000000 00000000000000011111 333
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeC---CCc-EEEEeCCC-CceeEEecCCC-CCCeeEEEEeecCCCCCcEEEEEe--
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASL---DGT-VKIWDDRK-STPLAVLRPYD-GHPVNCVTFLIGPHPQHIVLITGG-- 443 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~---Dg~-IrIWDl~s-g~~l~tl~~h~-~~~V~sV~fs~~~~pdg~~L~s~G-- 443 (1395)
+..-..++.-+-|+|.++.+|+-|-. |.. -|||=+++ |.-.+.+..|. +..+.-=-|. +||..|.--+
T Consensus 183 v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~----~DG~~i~y~~~~ 258 (386)
T PF14583_consen 183 VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV----PDGSTIWYDSYT 258 (386)
T ss_dssp EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-----TTSS-EEEEEEE
T ss_pred EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc----CCCCEEEEEeec
Confidence 33456678899999998777777654 332 36775543 33344443332 2134444577 8887665432
Q ss_pred --cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 444 --PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 444 --s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
..+..|.-+|+.++ ......... .+.-...++||.+++.-+.|.
T Consensus 259 ~~~~~~~i~~~d~~t~------------~~~~~~~~p-----------~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTG------------ERRRLMEMP-----------WCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp TTT--EEEEEE-TTT--------------EEEEEEE------------SEEEEEE-TTSSEEEEEE---
T ss_pred CCCCceEEEeeCCCCC------------CceEEEeCC-----------ceeeeEEcCCCCEEEecCCCC
Confidence 23446666777765 222111111 112356679999998877653
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.00 E-value=0.59 Score=53.82 Aligned_cols=239 Identities=15% Similarity=0.215 Sum_probs=123.0
Q ss_pred cCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc-ccccce
Q 039790 226 VNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP-QILGKI 303 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~-~~~~~~ 303 (1395)
..++.|+.|+.+| |.+++.... ....+. +...|..|.. -++-+.|+.-+ ||.|+++++..-....... ....+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~v-l~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSV-LPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEE-ecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578999999988 899998332 222222 2233999998 55555555554 4999999998754221110 000000
Q ss_pred EEEEEEecCCCCCccEEE--EeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 304 VVAIQILADGDSVHPRVC--WHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~--~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
............+..++ -...+...++++....+.++........ |. ...+.+. -.+.+.+
T Consensus 81 -~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~--f~-------------~~~ke~~-lp~~~~~ 143 (275)
T PF00780_consen 81 -RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS--FS-------------KLLKEIS-LPDPPSS 143 (275)
T ss_pred -ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc--cc-------------ceeEEEE-cCCCcEE
Confidence 00000001111122222 1234556777777777776654332110 00 1123332 4478899
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC-----------CCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD-----------GHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-----------~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
++|.. +.|+.|..++ ..+.|+.++.....+.... ..++..+.. +++.+|++ .|..-.
T Consensus 144 i~~~~---~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~Ll~---~~~~g~ 211 (275)
T PF00780_consen 144 IAFLG---NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-----SDNEFLLC---YDNIGV 211 (275)
T ss_pred EEEeC---CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-----CCceEEEE---ecceEE
Confidence 99983 5677776554 7889999876544442211 113444444 46667764 344444
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.|.... ..+ ...+...... ..+.+ ...+|++-.. +.|.||++.+|+
T Consensus 212 fv~~~G~----------~~r-~~~i~W~~~p----------~~~~~--~~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 212 FVNKNGE----------PSR-KSTIQWSSAP----------QSVAY--SSPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred EEcCCCC----------cCc-ccEEEcCCch----------hEEEE--ECCEEEEECC-CEEEEEECcCCc
Confidence 4444221 001 1233322211 12333 3346666554 559999999874
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.99 E-value=0.093 Score=63.57 Aligned_cols=263 Identities=13% Similarity=0.130 Sum_probs=133.6
Q ss_pred cCCCCCCeEEeecCCCCEEEEeCcCCC---C-Ce-----------e---eeCceEEEEEeccCCCccCcccccceeeeeC
Q 039790 153 TLPPPSDSTVVIPSAPPVRLRSSKVPK---G-RH-----------L---IGNHSVYDIDVRLDGEVQPQLEVTPITKYIS 214 (1395)
Q Consensus 153 s~p~p~~~Las~s~Dg~Vrlwd~~sp~---G-r~-----------L---~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~ 214 (1395)
++.+....|+.+-..|.|-+|. |..+ | +. + .+...+.|+..+.+..+. -...+...+..
T Consensus 8 s~a~~t~Elav~~~~GeVv~~k-~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~--~gf~P~~l~~~ 84 (395)
T PF08596_consen 8 SFAPETLELAVGLESGEVVLFK-FGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK--EGFLPLTLLDA 84 (395)
T ss_dssp EEETTTTEEEEEETTS-EEEEE-EEE------------------S--GGGSS-SEEE-GGG--TT-S--EEEEEEEEE--
T ss_pred EecCCCceEEEEccCCcEEEEE-cccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc--cccCchhheec
Confidence 3444557889999999998887 3211 1 00 1 113345555444332211 12456666777
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceE---Eecc------CCCCeEEEEEe----eCCC---CEEEEEEC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRS---LLRG------HTQRVTDMAFF----AEDV---HLLASASV 278 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~---~l~~------H~~~V~slaf~----s~dg---~~LaSgs~ 278 (1395)
..+.|++++.| |=-++|.|+.+|.+.|.|++...+. .+.. ....|+++.|. ..|+ -+|++|..
T Consensus 85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 78999999997 5569999999999999999665321 2222 33468889883 1222 37889999
Q ss_pred CCcEEEEECCCCCCCCCCcccccce-EEEEEEecCCCCCccEEE-EeCCC--------------------CeEEEEEeCC
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKI-VVAIQILADGDSVHPRVC-WHPHK--------------------QEILMLAIGN 336 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~-i~~l~~~~~~~~~v~~v~-~sp~~--------------------~~lla~g~~~ 336 (1395)
.|.+.+|.+.-.. .+.+ +........+.+.+..++ ++.+. ..+++++...
T Consensus 164 ~G~v~~fkIlp~~--------~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 164 SGNVLTFKILPSS--------NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp TSEEEEEEEEE-G--------GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred CCCEEEEEEecCC--------CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 9999999986211 1111 122222223334444333 32221 2355555566
Q ss_pred eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe-----cCCCcEEEEEeCCCcEEEEeCCCCce
Q 039790 337 RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC-----QWLTTRLASASLDGTVKIWDDRKSTP 411 (1395)
Q Consensus 337 ~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs-----pdg~~~LaSgs~Dg~IrIWDl~sg~~ 411 (1395)
.+.++........ .+.+ .....+..+.|- ..+ ..|++-..+|.|++|.+-.-+.
T Consensus 236 ~irv~~~~~~k~~-------------------~K~~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 236 DIRVFKPPKSKGA-------------------HKSF-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EEEEE-TT---EE-------------------EEE--SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--E
T ss_pred ceEEEeCCCCccc-------------------ceee-ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchH
Confidence 6666544322110 1122 111122333342 233 7888999999999999999888
Q ss_pred eEEecCCCC---CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 412 LAVLRPYDG---HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 412 l~tl~~h~~---~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
+..+..+.. ..+...+|+ .+|+.++-.| ...+.+|.+
T Consensus 295 i~~~~l~~~~d~~~~~~ssis----~~Gdi~~~~g--psE~~l~sv 334 (395)
T PF08596_consen 295 IKSVSLPPPLDSRRLSSSSIS----RNGDIFYWTG--PSEIQLFSV 334 (395)
T ss_dssp EEEEE-SS---HHHHTT-EE-----TTS-EEEE-S--SSEEEEEEE
T ss_pred hhcccCCCccccccccccEEC----CCCCEEEEeC--cccEEEEEE
Confidence 887765321 145667777 8888877755 445555544
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.96 E-value=0.42 Score=58.70 Aligned_cols=199 Identities=12% Similarity=0.143 Sum_probs=103.4
Q ss_pred EEEEEecCCCEEEEE-EcCC----eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC-----------cEE
Q 039790 220 LGRQIAVNRNYICYG-LKLG----NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG-----------RFF 283 (1395)
Q Consensus 220 ~~va~Spdg~~LasG-s~DG----~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg-----------tV~ 283 (1395)
....+||||++||++ +..| .|+|+|+.+|....-.-....-..+.| ..+++.|+....|. .|+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W-~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSW-SDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEE-CTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEE-eCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 357899999999987 4444 499999999853321101111223999 78878776665443 378
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecC-CCCC-ccEEEEeCCCCeEEEEEeCCe----EEEEEcCCCCccccccCCCC
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILAD-GDSV-HPRVCWHPHKQEILMLAIGNR----ILKIDSNRVGKGERFSAEEP 357 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~-~~~~-v~~v~~sp~~~~lla~g~~~~----ii~~d~~~~~~~~~~s~~~~ 357 (1395)
.|++.++... ...++.. .... ...+.++.++.++++....+. +..++......
T Consensus 206 ~~~~gt~~~~------------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~--------- 264 (414)
T PF02897_consen 206 RHKLGTPQSE------------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS--------- 264 (414)
T ss_dssp EEETTS-GGG-------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT---------
T ss_pred EEECCCChHh------------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC---------
Confidence 8888776411 1122322 2222 457888999988877665443 33333322100
Q ss_pred CccCccccccceEEEcccCCCe-EEEEEecCCCcEEEEEeC---CCcEEEEeCCCCce---eEEecCCCC-CCeeEEEEe
Q 039790 358 LKCPVDELINGVQLVGKHDGEI-TELSMCQWLTTRLASASL---DGTVKIWDDRKSTP---LAVLRPYDG-HPVNCVTFL 429 (1395)
Q Consensus 358 ~~~~~~~~~~~~~~l~~h~~~V-~slafspdg~~~LaSgs~---Dg~IrIWDl~sg~~---l~tl~~h~~-~~V~sV~fs 429 (1395)
.......+..+...+ ..+... .+ .+++.... .+.|.-.++..... ...+..|.. ..+..+...
T Consensus 265 -------~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~ 335 (414)
T PF02897_consen 265 -------PDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF 335 (414)
T ss_dssp -------SS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE
T ss_pred -------CcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE
Confidence 000123333333333 334443 33 44444332 35677777776642 224555543 134455443
Q ss_pred ecCCCCCcEEEEEecCCC--eEEEEECC
Q 039790 430 IGPHPQHIVLITGGPLNR--ELKIWASA 455 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg--~I~IWDl~ 455 (1395)
+.+|+.....|+ .|++||+.
T Consensus 336 ------~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 336 ------KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp ------TTEEEEEEEETTEEEEEEEETT
T ss_pred ------CCEEEEEEEECCccEEEEEECC
Confidence 555655553554 57888887
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.84 E-value=0.065 Score=66.87 Aligned_cols=234 Identities=12% Similarity=-0.011 Sum_probs=124.2
Q ss_pred EecCCCEEEEE-EcCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCC----cEEEEECCCCCCCCCCc
Q 039790 224 IAVNRNYICYG-LKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDG----RFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 224 ~Spdg~~LasG-s~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~Dg----tV~IWdl~tg~~~~~~~ 297 (1395)
+++||+.+... -..+.+.++|..+..+. .+. -.+.-..++| +++|.++++++.+. ++..-+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~-Vdgnpd~v~~-spdGk~afvTsyNsE~G~tl~em~a~e~d------ 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM-VDGNLDNVDT-DYDGKYAFSTCYNSEEGVTLAEMMAAERD------ 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEE-eCCCcccceE-CCCCCEEEEeccCcccCcceeeeccccCc------
Confidence 56688766433 34577888888875322 211 1224456677 77888887776321 22222221111
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
.+..+.+.. ...+.++|.+.++ .++.+.++|........ ..+..+-.-..
T Consensus 272 -----~~vvfni~~-------iea~vkdGK~~~V--~gn~V~VID~~t~~~~~----------------~~v~~yIPVGK 321 (635)
T PRK02888 272 -----WVVVFNIAR-------IEEAVKAGKFKTI--GGSKVPVVDGRKAANAG----------------SALTRYVPVPK 321 (635)
T ss_pred -----eEEEEchHH-------HHHhhhCCCEEEE--CCCEEEEEECCccccCC----------------cceEEEEECCC
Confidence 010110000 0122345655554 35678888865410000 00122222456
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce------------eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTP------------LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~------------l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
....|+++|||..+++++..+.+|-|.|+.+.+. +.+..- +......+|. ++|....+ -..
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFD----g~G~ayts-lf~ 394 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFD----GRGNAYTT-LFL 394 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEEC----CCCCEEEe-Eee
Confidence 6788999999966666677799999999987542 333332 2246778897 78865444 558
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
|..|..||+...-. .....+.+..+..+..|-..... +....-.-.+||+||++..+
T Consensus 395 dsqv~kwn~~~a~~--~~~g~~~~~v~~k~dV~y~pgh~----~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 395 DSQIVKWNIEAAIR--AYKGEKVDPIVQKLDVHYQPGHN----HASMGETKEADGKWLVSLNK 451 (635)
T ss_pred cceeEEEehHHHHH--HhccccCCcceecccCCCcccee----eecCCCcCCCCCCEEEEccc
Confidence 99999999976200 00011223555555544332110 00001122688999988654
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.71 E-value=0.37 Score=59.09 Aligned_cols=204 Identities=14% Similarity=0.075 Sum_probs=104.4
Q ss_pred EEEecCCCEEEEEEcC----------C-eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 222 RQIAVNRNYICYGLKL----------G-NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 222 va~Spdg~~LasGs~D----------G-~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
++.++.|..||....+ . .|+||+..+..+..+.--.+.|.++.| .. ...|+.-..||++++||+. |
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~w-t~-~e~LvvV~~dG~v~vy~~~-G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGW-TD-DEELVVVQSDGTVRVYDLF-G 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEE-CC-CCeEEEEEcCCEEEEEeCC-C
Confidence 4556666666665443 2 599999988876655444489999999 55 4567778899999999987 4
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
.. .+. .+..+ ....-.+..+..+ +..+.+ +++...++.++.+........ +.. .........
T Consensus 111 ~~--~fs--l~~~i---~~~~v~e~~i~~~-~~~~~G-ivvLt~~~~~~~v~n~~~~~~--~~~-------~~~~p~~~~ 172 (410)
T PF04841_consen 111 EF--QFS--LGEEI---EEEKVLECRIFAI-WFYKNG-IVVLTGNNRFYVVNNIDEPVK--LRR-------LPEIPGLWT 172 (410)
T ss_pred ce--eec--hhhhc---cccCccccccccc-ccCCCC-EEEECCCCeEEEEeCccccch--hhc-------cccCCCccc
Confidence 31 000 00000 0000001111111 222222 444445555655544221100 000 000000000
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
.+..+.....-..++.++ ...+....++.+.+.+-..... +.. .+ ++..++.| |+|++|+.-. .+|.+.
T Consensus 173 ~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~---i~~-~~-~i~~iavS----png~~iAl~t-~~g~l~ 241 (410)
T PF04841_consen 173 KFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ---IDS-DG-PIIKIAVS----PNGKFIALFT-DSGNLW 241 (410)
T ss_pred ccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc---ccC-CC-CeEEEEEC----CCCCEEEEEE-CCCCEE
Confidence 001111110012344444 4555555666666444332211 332 23 79999999 9999998876 789998
Q ss_pred EEECCCC
Q 039790 451 IWASAEE 457 (1395)
Q Consensus 451 IWDl~tg 457 (1395)
|+..+-.
T Consensus 242 v~ssDf~ 248 (410)
T PF04841_consen 242 VVSSDFS 248 (410)
T ss_pred EEECccc
Confidence 8876554
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.69 E-value=0.93 Score=57.04 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=40.2
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-EeccCCC------Ce--EEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLRGHTQ------RV--TDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~------~V--~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+..++.++.+|.|+-+|..+|++. .+..... .+ ..+.+ .++..++.++.||.|+-+|.++|+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~~~~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--WDPRKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--ccCCeEEEecCCCeEEEEECCCCC
Confidence 445777777899999999888532 2221111 11 11222 122678888899999999999998
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.61 E-value=0.85 Score=51.70 Aligned_cols=217 Identities=13% Similarity=0.160 Sum_probs=107.5
Q ss_pred EeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEE
Q 039790 252 LLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330 (1395)
Q Consensus 252 ~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ll 330 (1395)
.+.+-...+..|+| .++ +.+++.....+.|...+.. |+ .+..+.+.+ ....-.|++..++.+++
T Consensus 16 ~l~g~~~e~SGLTy-~pd~~tLfaV~d~~~~i~els~~-G~-----------vlr~i~l~g--~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 16 PLPGILDELSGLTY-NPDTGTLFAVQDEPGEIYELSLD-GK-----------VLRRIPLDG--FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp E-TT--S-EEEEEE-ETTTTEEEEEETTTTEEEEEETT--------------EEEEEE-SS---SSEEEEEE-STTEEEE
T ss_pred ECCCccCCccccEE-cCCCCeEEEEECCCCEEEEEcCC-CC-----------EEEEEeCCC--CCCceeEEEECCCEEEE
Confidence 45566667999999 554 5677777888888888864 55 444444433 34455788876664444
Q ss_pred EEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE--EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 331 MLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ--LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 331 a~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
+.-..+.++.+.......... ..+ ...+. ....+...+-.++|.+.+ +.|+.+-...-.+||.+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~----------~~~-~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLD----------RAD-VQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EETTTTEEEEEEE----TT------------EEE-EEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEES
T ss_pred EEcCCCcEEEEEEeccccccc----------hhh-ceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEcc
Confidence 443467777776633221100 000 00011 112355678999999987 4555566666666766543
Q ss_pred ---CceeEEec--------CCCCCCeeEEEEeecCCCCC-cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 409 ---STPLAVLR--------PYDGHPVNCVTFLIGPHPQH-IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 409 ---g~~l~tl~--------~h~~~~V~sV~fs~~~~pdg-~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
...+.... .+.. .+.+++|. |.. .+++. +..++.|.++| ..| +.+..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~-d~S~l~~~----p~t~~lliL-S~es~~l~~~d-~~G------------~~~~~~~ 209 (248)
T PF06977_consen 149 FPGGFDLFVSDDQDLDDDKLFVR-DLSGLSYD----PRTGHLLIL-SDESRLLLELD-RQG------------RVVSSLS 209 (248)
T ss_dssp TT-SS--EEEE-HHHH-HT--SS----EEEEE----TTTTEEEEE-ETTTTEEEEE--TT--------------EEEEEE
T ss_pred ccCccceeeccccccccccceec-cccceEEc----CCCCeEEEE-ECCCCeEEEEC-CCC------------CEEEEEE
Confidence 22222111 1222 57899998 554 44444 55899999999 555 6677666
Q ss_pred ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE
Q 039790 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515 (1395)
Q Consensus 477 ~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW 515 (1395)
...+...-...-.--..++|.++|++.+++ .-|..|+|
T Consensus 210 L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 210 LDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred eCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 555321100000012369999999877765 46666665
No 348
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.46 Score=55.62 Aligned_cols=203 Identities=9% Similarity=-0.011 Sum_probs=113.5
Q ss_pred EEecCCCE-EEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 223 QIAVNRNY-ICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 223 a~Spdg~~-LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
.|.++... +.+--..+.|.-|+..++....+..... +.++.. -..+..|+++.. -+++++.+++..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~-~~~~~~-~d~~g~Lv~~~~--g~~~~~~~~~~~--------- 97 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGG-FSSGAL-IDAGGRLIACEH--GVRLLDPDTGGK--------- 97 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCC-ccccee-ecCCCeEEEEcc--ccEEEeccCCce---------
Confidence 36666664 4444667899999998887776664443 455544 334445555543 477888765541
Q ss_pred ceEEEEE-Ee-cCCCCCccEEEEeCCCCeEEEEEeC-----------CeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 302 KIVVAIQ-IL-ADGDSVHPRVCWHPHKQEILMLAIG-----------NRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 302 ~~i~~l~-~~-~~~~~~v~~v~~sp~~~~lla~g~~-----------~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+..+. .. .......+.+...|+|...+..... +.+++++. ....
T Consensus 98 --~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p---------------------~g~~ 154 (307)
T COG3386 98 --ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP---------------------DGGV 154 (307)
T ss_pred --eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC---------------------CCCE
Confidence 01111 11 1122344567788887644433221 11222221 0111
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--C----ce-eEEecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--S----TP-LAVLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--g----~~-l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
.+.+..|-..-+.|+||||+..++++=+..+.|.-|++.. + +. ...+..+.+ ..-.++.. .+|.+.++
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G-~PDG~~vD----adG~lw~~ 229 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPG-LPDGMAVD----ADGNLWVA 229 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCC-CCCceEEe----CCCCEEEe
Confidence 3444445556678999999954555555558888887652 1 11 122222334 55566665 67776654
Q ss_pred EecCCC-eEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 442 GGPLNR-ELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 442 ~Gs~Dg-~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
+. .+| .|.+|+.. + +.+..+..+..
T Consensus 230 a~-~~g~~v~~~~pd-G------------~l~~~i~lP~~ 255 (307)
T COG3386 230 AV-WGGGRVVRFNPD-G------------KLLGEIKLPVK 255 (307)
T ss_pred cc-cCCceEEEECCC-C------------cEEEEEECCCC
Confidence 44 444 89999887 6 88888887743
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.50 E-value=1.1 Score=56.39 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=60.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE-----------------ecCCCeEEEEE
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG-----------------GPLNRELKIWA 453 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~-----------------Gs~Dg~I~IWD 453 (1395)
+++.++.+|.+...|.++|+.+....... ..+..+ | + .++.. ...+|.|.-.|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~----~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYD----P-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec----cccccC----C-c-eEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 67888899999999999999888764210 112222 2 1 12111 11357788888
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccc-cccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAEL-RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~-~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.++ +.+-+......... ......+...+. -.+.+|+.++.||.|+.+|..+|+
T Consensus 373 ~~tG------------~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 373 PKTG------------KVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred CCCC------------cEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCc
Confidence 8877 43333332210000 000000111122 245678888899999999999886
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.48 E-value=2.5 Score=50.37 Aligned_cols=219 Identities=13% Similarity=0.144 Sum_probs=99.2
Q ss_pred CcCCCCCee--ee----CceEEEEEeccCCCccCcccccceeeeeCCC-CCEEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 039790 175 SKVPKGRHL--IG----NHSVYDIDVRLDGEVQPQLEVTPITKYISDP-GLVLGRQIAVNRNYICYGLKLGNIRILNIIT 247 (1395)
Q Consensus 175 ~~sp~Gr~L--~G----~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~-~~V~~va~Spdg~~LasGs~DG~IrIWd~~~ 247 (1395)
+|..+|+.| .+ ...+|.++.. ...+..|+... ....+..++++.+.|++......|+-.|+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~----------t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T 111 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLA----------TGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT 111 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETT----------T-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcc----------cCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc
Confidence 355677666 22 3356666543 23334443322 1122455789999998877777899999999
Q ss_pred Cce-EEeccCCCCeEEEEEe-eCCCCEEEEEEC----------------------CCcEEEEECCCCCCCCCCcccccce
Q 039790 248 ALR-SLLRGHTQRVTDMAFF-AEDVHLLASASV----------------------DGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 248 ~~~-~~l~~H~~~V~slaf~-s~dg~~LaSgs~----------------------DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
.+. ..+.-..+.+-...|. ..++.+++.+-. .+.|+--|+.+|+
T Consensus 112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~------------ 179 (386)
T PF14583_consen 112 LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE------------ 179 (386)
T ss_dssp --EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--------------
T ss_pred CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc------------
Confidence 754 4444555666556663 345555544321 1234444444443
Q ss_pred EEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eE-EEEEcCCCCccccccCCCCCccCccccccceEEEcccC--C
Q 039790 304 VVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RI-LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD--G 377 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~i-i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~--~ 377 (1395)
...+......+..+.|+|....+++-|..+ .+ .++|........ .+.+..|. .
T Consensus 180 ---~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~------------------~~~v~~~~~~e 238 (386)
T PF14583_consen 180 ---RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN------------------VKKVHRRMEGE 238 (386)
T ss_dssp ---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---------------------EESS---TTE
T ss_pred ---eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc------------------ceeeecCCCCc
Confidence 122222334455688999998888888743 22 133332221110 11111121 2
Q ss_pred CeEEEEEecCCCcEEEEEe----CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 378 EITELSMCQWLTTRLASAS----LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs----~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.+.-=-|.+||..+..-+. .+..|.-+|..++........ . +..-+--+ +||.+++-=|
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p-~~~H~~ss----~Dg~L~vGDG 301 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--P-WCSHFMSS----PDGKLFVGDG 301 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-----TTSSEEEEEE
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--C-ceeeeEEc----CCCCEEEecC
Confidence 2333457888854443332 244577778888755332221 1 33334444 8888776545
No 351
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.47 E-value=1.3 Score=53.82 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=65.5
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC-------------CC
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP-------------QH 436 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p-------------dg 436 (1395)
..+......+.+++.+|++ ++.|+...=|+|.++|+..+..++.++|..+..+.-+......+. ..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred EeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 3444455678999999997 788887777999999999999999999887622222211100000 02
Q ss_pred cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
.+|+.-...-|.|.||+++.| ..+..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g------------~Rv~a~~v 408 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQG------------PRVAAFNV 408 (415)
T ss_pred EEEEEEeccCCeEEEEecCCC------------CEEEEEEe
Confidence 245554558899999999998 77766654
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.42 E-value=0.31 Score=59.99 Aligned_cols=145 Identities=9% Similarity=0.045 Sum_probs=78.2
Q ss_pred ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE
Q 039790 254 RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA 333 (1395)
Q Consensus 254 ~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g 333 (1395)
....-....|.+ +|+|++++.| .||...|+...... . ... +....++|...+ .+++.-
T Consensus 29 g~~~~~p~~ls~-npngr~v~V~-g~geY~iyt~~~~r--------------~-k~~----G~g~~~vw~~~n-~yAv~~ 86 (443)
T PF04053_consen 29 GSCEIYPQSLSH-NPNGRFVLVC-GDGEYEIYTALAWR--------------N-KAF----GSGLSFVWSSRN-RYAVLE 86 (443)
T ss_dssp EE-SS--SEEEE--TTSSEEEEE-ETTEEEEEETTTTE--------------E-EEE----EE-SEEEE-TSS-EEEEE-
T ss_pred CCCCcCCeeEEE-CCCCCEEEEE-cCCEEEEEEccCCc--------------c-ccc----CceeEEEEecCc-cEEEEE
Confidence 334445788999 8999988884 56788888743322 1 111 223468898844 455555
Q ss_pred eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE
Q 039790 334 IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA 413 (1395)
Q Consensus 334 ~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~ 413 (1395)
....+.++........ ..+. ....+..|-. | .+|...+.+ .|.+||+.+++.++
T Consensus 87 ~~~~I~I~kn~~~~~~--------------------k~i~-~~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~ 140 (443)
T PF04053_consen 87 SSSTIKIYKNFKNEVV--------------------KSIK-LPFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIR 140 (443)
T ss_dssp TTS-EEEEETTEE-TT--------------------------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEE
T ss_pred CCCeEEEEEcCccccc--------------------eEEc-CCcccceEEc---C-cEEEEECCC-CEEEEEhhHcceee
Confidence 4555665543221110 1111 1112333332 5 666666544 89999999999999
Q ss_pred EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 414 VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 414 tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.+... .|..|.|+ ++|.+++..+ +..+.|++..
T Consensus 141 ~i~v~---~vk~V~Ws----~~g~~val~t--~~~i~il~~~ 173 (443)
T PF04053_consen 141 RIDVS---AVKYVIWS----DDGELVALVT--KDSIYILKYN 173 (443)
T ss_dssp EESS----E-EEEEE-----TTSSEEEEE---S-SEEEEEE-
T ss_pred EEecC---CCcEEEEE----CCCCEEEEEe--CCeEEEEEec
Confidence 99743 48999999 9999999876 5678888764
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.38 E-value=0.1 Score=63.92 Aligned_cols=180 Identities=11% Similarity=0.037 Sum_probs=99.9
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEE---CC-CcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASAS---VD-GRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs---~D-gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
+.+.+-|.+......+..-...+..-+| ++++..++... .. ..++++|+.++.... .+. .
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~w-s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-----------i~~----~ 236 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAW-SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-----------ILN----F 236 (425)
T ss_pred ceEEEEccCCcceeEecccCcceecccc-CcCCCceEEEEEecCCCceEEEEeccCCccce-----------eec----c
Confidence 3444545543234444444556667778 77777655442 22 469999999987211 111 1
Q ss_pred CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 314 DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
......-.|+|+|..++.+...+...-++........ ...+..-.+.-+.=.|+|||..++.
T Consensus 237 ~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~------------------~~~Lt~~~gi~~~Ps~spdG~~ivf 298 (425)
T COG0823 237 NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN------------------LPRLTNGFGINTSPSWSPDGSKIVF 298 (425)
T ss_pred CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc------------------ceecccCCccccCccCCCCCCEEEE
Confidence 2222346899999988888776554444433222110 1112222222235679999955555
Q ss_pred EEeCCCc--EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCe--EEEEECCCC
Q 039790 394 SASLDGT--VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRE--LKIWASAEE 457 (1395)
Q Consensus 394 Sgs~Dg~--IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~--I~IWDl~tg 457 (1395)
+.+..|. |.++|...+.. ..+....+ .-..-.|+ |||++|+..+..+|. |.+.|+.++
T Consensus 299 ~Sdr~G~p~I~~~~~~g~~~-~riT~~~~-~~~~p~~S----pdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 299 TSDRGGRPQIYLYDLEGSQV-TRLTFSGG-GNSNPVWS----PDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred EeCCCCCcceEEECCCCCce-eEeeccCC-CCcCccCC----CCCCEEEEEeccCCceeeEEeccCCC
Confidence 5556666 55556554443 33333333 22367788 999999987744555 666666555
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.36 E-value=0.11 Score=64.14 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=97.3
Q ss_pred CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC
Q 039790 256 HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG 335 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~ 335 (1395)
|...|.--++ ...+++|+.|+.-|.|++|+-..+.... ...+.....+..++.++.. ++++.|..
T Consensus 32 ~~~~v~lTc~-dst~~~l~~GsS~G~lyl~~R~~~~~~~-------------~~~~~~~~~~~~~~vs~~e-~lvAagt~ 96 (726)
T KOG3621|consen 32 FPARVKLTCV-DATEEYLAMGSSAGSVYLYNRHTGEMRK-------------LKNEGATGITCVRSVSSVE-YLVAAGTA 96 (726)
T ss_pred CcceEEEEEe-ecCCceEEEecccceEEEEecCchhhhc-------------ccccCccceEEEEEecchh-HhhhhhcC
Confidence 3344554555 6788999999999999999988776211 1111233444455666665 45555555
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ce
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS----TP 411 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg----~~ 411 (1395)
++.+.|.....+... +. ... ...-..|...|++++|++++ ..|.+|..-|+|..-.+.+. ..
T Consensus 97 ~g~V~v~ql~~~~p~----~~-------~~~--t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~ 162 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPR----DL-------DYV--TPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSK 162 (726)
T ss_pred CceEEeehhhccCCC----cc-------eee--ccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccc
Confidence 555555443322110 00 000 00112378899999999999 89999999999998877762 12
Q ss_pred eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 412 LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 412 l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.+.+-...+ .|-.+.+. ++..|++.. -...++++..
T Consensus 163 ~q~il~~ds-~IVQlD~~-----q~~LLVStl---~r~~Lc~tE~ 198 (726)
T KOG3621|consen 163 SQEILSEDS-EIVQLDYL-----QSYLLVSTL---TRCILCQTEA 198 (726)
T ss_pred cceeeccCc-ceEEeecc-----cceehHhhh---hhhheeecch
Confidence 223333344 78888885 565555533 2334555544
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.31 E-value=0.008 Score=44.77 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=34.0
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILN 244 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd 244 (1395)
.++..+..|...|.++.|.+++.++++|+.||.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34567778899999999999999999999999999996
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.28 E-value=0.0014 Score=79.01 Aligned_cols=164 Identities=16% Similarity=0.210 Sum_probs=106.1
Q ss_pred eCCCCCEEEEEEec-CCCEEEEEEc----CCeEEEEECCCCc-----eEEecc-CCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 213 ISDPGLVLGRQIAV-NRNYICYGLK----LGNIRILNIITAL-----RSLLRG-HTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 213 ~~h~~~V~~va~Sp-dg~~LasGs~----DG~IrIWd~~~~~-----~~~l~~-H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
.+|...+++++|++ |.+.||.|.. |..+.|||+.++. ...|.+ ......+++| -.+.+++++|...+.
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cw-lrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCW-LRDTKLVLAGMTSRS 177 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccc-ccCcchhhcccccch
Confidence 35778899999988 6778888853 6789999998861 222333 4455678999 588889999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCC-CCccccccCCCCCcc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNR-VGKGERFSAEEPLKC 360 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~-~~~~~~~s~~~~~~~ 360 (1395)
|.++|++..... ...-....+..+...|.....++...++.+..||... ... ++..
T Consensus 178 ~~ifdlRqs~~~---------------~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnien--------pl~~ 234 (783)
T KOG1008|consen 178 VHIFDLRQSLDS---------------VSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIEN--------PLQI 234 (783)
T ss_pred hhhhhhhhhhhh---------------hhhhhhhhcccceecCCCCCceeccccCceeeccchhhhcc--------HHHH
Confidence 999999843210 0000112334566777666677777777777777422 111 1100
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC-CcEEEEeCC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD-GTVKIWDDR 407 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D-g~IrIWDl~ 407 (1395)
. ++......+.+..++|+|....++++...| ++|++||+.
T Consensus 235 i-------~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 235 I-------LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred H-------hhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 0 000111223588999999876678887765 789999975
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.25 E-value=0.73 Score=53.83 Aligned_cols=219 Identities=9% Similarity=0.107 Sum_probs=121.4
Q ss_pred EEEecCCCEEEEEE--cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC-CCCCCCCcc
Q 039790 222 RQIAVNRNYICYGL--KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE-GPDEEDKPQ 298 (1395)
Q Consensus 222 va~Spdg~~LasGs--~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t-g~~~~~~~~ 298 (1395)
.+++.||++++..- =--.|.|.|+..++...-..-.++ .+.| +....-|.+-|.||++.-..+.. |+.
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC--~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~------ 170 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC--WLIY-PSGNRGFSMLCGDGSLLTVTLDADGKE------ 170 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE--EEEE-EEETTEEEEEETTSCEEEEEETSTSSE------
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE--EEEE-ecCCCceEEEecCCceEEEEECCCCCE------
Confidence 46888999887763 346788999988764433223332 2334 44446688999999999999984 441
Q ss_pred cccceEEEEEEecCCCC-CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 299 ILGKIVVAIQILADGDS-VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~-~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
. ...-.++..... ....-.+...+..++..+..|.++..+.....-. |. .++..........-... +
T Consensus 171 ---~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~--~~--~~~~~~t~~e~~~~WrP----G 238 (342)
T PF06433_consen 171 ---A-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK--FG--KPWSLLTDAEKADGWRP----G 238 (342)
T ss_dssp ---E-EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE--EE--EEEESS-HHHHHTTEEE-----
T ss_pred ---e-EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc--cc--CcccccCccccccCcCC----c
Confidence 0 111223333222 2233455556667777888888888877553211 00 00000000000000111 1
Q ss_pred CeEEEEEecCCCcEEEEEe-------CCC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEEEecCCC
Q 039790 378 EITELSMCQWLTTRLASAS-------LDG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLITGGPLNR 447 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs-------~Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg 447 (1395)
.-.-+++++..+++++.-. +|+ .|-+||+.+++.+..+.... .+.+|..+ .|.+ +|++....++
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vs----qd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVS----QDDKPLLYALSAGDG 312 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEE----SSSS-EEEEEETTTT
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEc----cCCCcEEEEEcCCCC
Confidence 1223566654423322211 122 37778999999999998542 68899998 5544 6655444689
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
.|.+||..++ +.+++++.-+
T Consensus 313 ~l~v~D~~tG------------k~~~~~~~lG 332 (342)
T PF06433_consen 313 TLDVYDAATG------------KLVRSIEQLG 332 (342)
T ss_dssp EEEEEETTT--------------EEEEE---S
T ss_pred eEEEEeCcCC------------cEEeehhccC
Confidence 9999999999 8888887544
No 358
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.11 Score=62.09 Aligned_cols=142 Identities=15% Similarity=0.225 Sum_probs=92.7
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-------eEEEEEeCCeEEEEEcC
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-------EILMLAIGNRILKIDSN 344 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-------~lla~g~~~~ii~~d~~ 344 (1395)
+|.++..-..|+--|++.|+ ++....+..+ |+-+.+.|+.. .-|++-+++.+++||.+
T Consensus 348 il~~~~~~~~l~klDIE~GK-----------IVeEWk~~~d----i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpR 412 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGK-----------IVEEWKFEDD----INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPR 412 (644)
T ss_pred EeeCCCCcCcceeeecccce-----------eeeEeeccCC----cceeeccCCcchhcccccccEEeecCCceEEeccc
Confidence 34455555667888888877 3333332222 55555655432 35677778899999987
Q ss_pred CCCccccccCCCCCccCccccccceEEEccc----CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCC
Q 039790 345 RVGKGERFSAEEPLKCPVDELINGVQLVGKH----DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYD 419 (1395)
Q Consensus 345 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h----~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~ 419 (1395)
-.+... +....+| .....|++-.-+| ++|.||.+|.||+||- .+..-++ |.+-.
T Consensus 413 v~~~~k------------------l~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG 471 (644)
T KOG2395|consen 413 VQGKNK------------------LAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLG 471 (644)
T ss_pred ccCcce------------------eeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccC
Confidence 443310 1122222 2345677766665 9999999999999995 5544444 45555
Q ss_pred CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 420 GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 420 ~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
. +|..|..+ .||+||+.+| +..|.|-++.-
T Consensus 472 ~-~I~hVdvt----adGKwil~Tc--~tyLlLi~t~~ 501 (644)
T KOG2395|consen 472 D-AIKHVDVT----ADGKWILATC--KTYLLLIDTLI 501 (644)
T ss_pred C-ceeeEEee----ccCcEEEEec--ccEEEEEEEec
Confidence 4 99999999 9999999876 77788877653
No 359
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.22 E-value=0.11 Score=63.89 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=87.2
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.|+.+|+....... -........+-.+..+.....+.++|.++.+++ +.++...++......
T Consensus 3 ~i~~~~~~~~~~~~----dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r------------- 64 (443)
T PF04053_consen 3 EIRTANLKNISEIK----DGERLPLSVKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR------------- 64 (443)
T ss_dssp EEEEEE--S---------TTS-B----EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE-------------
T ss_pred ceEEEECcCCCccC----CCceeeEEeccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc-------------
Confidence 46666766652100 011222334445555666789999999987666 555555555421110
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
. ...+....++|... +.+|+-...++|+|+.--+......+.... .+..+ | . |..|+
T Consensus 65 ---------~---k~~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~--~~~~I-f-----~-G~LL~ 121 (443)
T PF04053_consen 65 ---------N---KAFGSGLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVVKSIKLPF--SVEKI-F-----G-GNLLG 121 (443)
T ss_dssp ---------E---EEEEE-SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT-----SS---EEEE-E-------SSSEE
T ss_pred ---------c---cccCceeEEEEecC--ccEEEEECCCeEEEEEcCccccceEEcCCc--ccceE-E-----c-CcEEE
Confidence 0 12244567889885 467887778999997433333333443221 23333 2 2 77777
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..+ ++.|.+||+.++ +.++.+.... + ..+.|+++|.+++-.+.+ .++|++.+.
T Consensus 122 ~~~--~~~i~~yDw~~~------------~~i~~i~v~~--v---------k~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 122 VKS--SDFICFYDWETG------------KLIRRIDVSA--V---------KYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEE--TTEEEEE-TTT--------------EEEEESS-E------------EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred EEC--CCCEEEEEhhHc------------ceeeEEecCC--C---------cEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 755 558999999988 8888887543 1 248999999999988755 688988764
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.11 E-value=1.4 Score=51.71 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=106.0
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEecc----C-CCCeEEEEEeeCCCCEEEEEEC-----------C
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALR-SLLRG----H-TQRVTDMAFFAEDVHLLASASV-----------D 279 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~-~~l~~----H-~~~V~slaf~s~dg~~LaSgs~-----------D 279 (1395)
+.+.+...--++..|+++. ..+++++.+.+.. ..+.. . ..+-+++.+ .++|.+-++... -
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v-~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 66 GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVV-DPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeE-cCCCCEEEeCCCccccCccccCCc
Confidence 3334443333444454443 3466777766543 32221 1 134566777 677765554333 0
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCC
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
|.|+.+|. .+. ..+....+-..-+.++|+|++..++.+-.. +.+.+++... ..+..
T Consensus 143 G~lyr~~p-~g~--------------~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~-~~g~~------- 199 (307)
T COG3386 143 GSLYRVDP-DGG--------------VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP-ATGPI------- 199 (307)
T ss_pred ceEEEEcC-CCC--------------EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc-ccCcc-------
Confidence 22333332 222 223333334445679999999877777654 7777777643 11100
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG-TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg-~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
... .....+..+.+..-.++...+| ++.+++..+| .|.+|+.. |+.+..+..... .+++++|- -++.+
T Consensus 200 ----~~~-~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~Fg---G~~~~ 268 (307)
T COG3386 200 ----GGR-RGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFG---GPDLN 268 (307)
T ss_pred ----CCc-ceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEe---CCCcC
Confidence 000 1122333345666678888888 5555555554 89999987 999999987754 89999996 24556
Q ss_pred EEEEEe
Q 039790 438 VLITGG 443 (1395)
Q Consensus 438 ~L~s~G 443 (1395)
.|++++
T Consensus 269 ~L~iTs 274 (307)
T COG3386 269 TLYITS 274 (307)
T ss_pred EEEEEe
Confidence 555544
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.11 E-value=0.16 Score=62.12 Aligned_cols=192 Identities=15% Similarity=0.149 Sum_probs=109.4
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEc---C-CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEE-ECCCc--EE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLK---L-GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASA-SVDGR--FF 283 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~---D-G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSg-s~Dgt--V~ 283 (1395)
.+......+..-.|++++..+++-.. . ..|.++|++++....+....+.-..-+| ++||++|+-+ ..||. |+
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~f-spDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAF-SPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccC-CCCCCEEEEEECCCCCccEE
Confidence 33334455666689999988777632 2 4599999999864433334444456788 8888876654 45665 66
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+.|+..+.. .+ +....+.-..=.|+|+|..++.++..++.-.++.......
T Consensus 266 ~~dl~~~~~--------------~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-------------- 316 (425)
T COG0823 266 LMDLDGKNL--------------PR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-------------- 316 (425)
T ss_pred EEcCCCCcc--------------ee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--------------
Confidence 667765541 11 1222222234578999998887766443323222211110
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeC-CCc--EEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASL-DGT--VKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~-Dg~--IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
....+....+.-..-.|+||| .+|+..+. +|. |.+.|+.++.-++.+..-. ....-+|. ++|+.++
T Consensus 317 ----~~~riT~~~~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~----~ng~~i~ 385 (425)
T COG0823 317 ----QVTRLTFSGGGNSNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGKIRILTSTY--LNESPSWA----PNGRMIM 385 (425)
T ss_pred ----ceeEeeccCCCCcCccCCCCC-CEEEEEeccCCceeeEEeccCCCCcEEEccccc--cCCCCCcC----CCCceEE
Confidence 012222222222377899999 66666554 454 6667776665455444221 34456676 8888777
Q ss_pred EEe
Q 039790 441 TGG 443 (1395)
Q Consensus 441 s~G 443 (1395)
..+
T Consensus 386 ~~s 388 (425)
T COG0823 386 FSS 388 (425)
T ss_pred Eec
Confidence 654
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=1.5 Score=53.40 Aligned_cols=203 Identities=10% Similarity=0.025 Sum_probs=127.4
Q ss_pred CEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC---CCcEEEEECCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV---DGRFFIWNITEGPDE 293 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl~tg~~~ 293 (1395)
.-.+++++++++.+... ..++.|.+.|..+........-...-..++| ++++..+..+.. +++|.+.|-.+++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~-~~~~~~vYV~n~~~~~~~vsvid~~t~~-- 151 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAV-DPDGKYVYVANAGNGNNTVSVIDAATNK-- 151 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEE-CCCCCEEEEEecccCCceEEEEeCCCCe--
Confidence 34567888888755444 4568999999776543322222226678888 778866666555 6778888877765
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
. +......... ..+++.|++..++++. .++.+..++.....- +. .. ....
T Consensus 152 ---------~---~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v--------------~~-~~-~~~~ 202 (381)
T COG3391 152 ---------V---TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV--------------VR-GS-VGSL 202 (381)
T ss_pred ---------E---EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce--------------ec-cc-cccc
Confidence 1 2222222223 7899999999887777 456666666322110 00 00 0000
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLD--GTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~D--g~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
..-...-..+.++++|.+..++...+ +.+.+.|..++..... +..-.. ....+.++ |+|.++.+.-+..+.+
T Consensus 203 ~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~----p~g~~~yv~~~~~~~V 277 (381)
T COG3391 203 VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVD----PAGKAAYVANSQGGTV 277 (381)
T ss_pred cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeEC----CCCCEEEEEecCCCeE
Confidence 11223346788999995444544444 6899999998876665 333333 46678888 9999888875566889
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
.+-|..+.
T Consensus 278 ~vid~~~~ 285 (381)
T COG3391 278 SVIDGATD 285 (381)
T ss_pred EEEeCCCC
Confidence 99988876
No 363
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.00 E-value=4.6 Score=47.36 Aligned_cols=178 Identities=8% Similarity=0.012 Sum_probs=88.2
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEE----------CCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASAS----------VDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs----------~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
+.|+|+|.+++.+.-.. -.+-.-.+.. +++++.+++++ ..-.|.+||..+-. ....+
T Consensus 17 ~rv~viD~d~~k~lGmi-~~g~~~~~~~-spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-----------~~~EI 83 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI-DTGFLGNVAL-SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-----------PTGEI 83 (342)
T ss_dssp EEEEEEETTTTEEEEEE-EEESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-----------EEEEE
T ss_pred ceEEEEECCCCcEEEEe-ecccCCceeE-CCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-----------ccceE
Confidence 46888888877533111 1122334566 78888877653 23359999999854 11122
Q ss_pred EEecCC----CCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 308 QILADG----DSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 308 ~~~~~~----~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
.+-..+ ......+.++.+++++++.-.. ..+-++|.....- +..+. -.+ |
T Consensus 84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv--------------------v~ei~-~PG---C 139 (342)
T PF06433_consen 84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV--------------------VGEID-TPG---C 139 (342)
T ss_dssp EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE--------------------EEEEE-GTS---E
T ss_pred ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCce--------------------eeeec-CCC---E
Confidence 222211 1122345666666665554432 3344444422100 11111 111 2
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCC-CCceeEEe----cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDR-KSTPLAVL----RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~-sg~~l~tl----~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.-.-|.++..|.+.|.||.+.-..+. .|+...+. .......+..-.+. ..++.+++. . .+|.|+--|+..
T Consensus 140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~---~~~~~~~F~-S-y~G~v~~~dlsg 214 (342)
T PF06433_consen 140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS---RDGGRLYFV-S-YEGNVYSADLSG 214 (342)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE---TTTTEEEEE-B-TTSEEEEEEETT
T ss_pred EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE---CCCCeEEEE-e-cCCEEEEEeccC
Confidence 22234444678888899998888877 45554322 12222022233443 123445554 3 899999999876
Q ss_pred C
Q 039790 457 E 457 (1395)
Q Consensus 457 g 457 (1395)
.
T Consensus 215 ~ 215 (342)
T PF06433_consen 215 D 215 (342)
T ss_dssp S
T ss_pred C
Confidence 5
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=3.5 Score=50.16 Aligned_cols=239 Identities=10% Similarity=0.030 Sum_probs=140.2
Q ss_pred CEEEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEeccCC-CCeEEEEEeeCCCC-EEEEEECCCcEEEEECCCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGL-KLGNIRILNIITALRSLLRGHT-QRVTDMAFFAEDVH-LLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs-~DG~IrIWd~~~~~~~~l~~H~-~~V~slaf~s~dg~-~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
....+.+.+++..+.... ....+.+.+........+..-. ..-..+++ .+.+. .+++...++.|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v-~~~~~~vyv~~~~~~~v~vid~~~~~~-- 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAV-NPAGNKVYVTTGDSNTVSVIDTATNTV-- 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceee-CCCCCeEEEecCCCCeEEEEcCcccce--
Confidence 445566777775444432 2224555554422222211111 33446677 45555 666666678999999776551
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe---CCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI---GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~---~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
+....-.. ....+.|+++++.++++.. ++.+..++...... ...
T Consensus 109 ------------~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--------------------~~~ 155 (381)
T COG3391 109 ------------LGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--------------------TAT 155 (381)
T ss_pred ------------eeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--------------------EEE
Confidence 22222111 4457999999998888877 45666666543221 111
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE-----EecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA-----VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~-----tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
...-..+ ..+++.|+|...+++-..+++|.+.|.......+ .+..+. ....+.++ ++|.++......+
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~--~P~~i~v~----~~g~~~yV~~~~~ 228 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT--GPAGIAVD----PDGNRVYVANDGS 228 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC--CCceEEEC----CCCCEEEEEeccC
Confidence 1111123 8899999995455555688999999976655443 122222 45778888 8999766655233
Q ss_pred --CeEEEEECCCCCCCCCCCCcccccEEEE-EeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCCC
Q 039790 447 --RELKIWASAEEEGWLLPSDIESWKCTQT-LELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDYG 520 (1395)
Q Consensus 447 --g~I~IWDl~tg~~~~~~~~~~~~~~l~t-l~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~g 520 (1395)
+.+.+.|..++ ..... +..... ....+.++|+|.++.... ..+.+++.|..+.
T Consensus 229 ~~~~v~~id~~~~------------~v~~~~~~~~~~---------~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 229 GSNNVLKIDTATG------------NVTATDLPVGSG---------APRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCceEEEEeCCCc------------eEEEeccccccC---------CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 58888888876 44333 111110 011378889999887764 4478888887653
No 365
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.96 E-value=1.5 Score=53.25 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=46.7
Q ss_pred EEEEecCCCEEEEEEcCCeEEE---EECCC-----Cc-eEEecc---CC--CCeEEEEEee----------CCCCEEEEE
Q 039790 221 GRQIAVNRNYICYGLKLGNIRI---LNIIT-----AL-RSLLRG---HT--QRVTDMAFFA----------EDVHLLASA 276 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrI---Wd~~~-----~~-~~~l~~---H~--~~V~slaf~s----------~dg~~LaSg 276 (1395)
.++.++++++||.|..+..+.+ |+... +. .....+ +. ..|+++.|.+ +|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4578999999999988776665 64421 11 111111 21 5788877742 346789999
Q ss_pred ECCCcEEEEECCCCC
Q 039790 277 SVDGRFFIWNITEGP 291 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~ 291 (1395)
..+|.|++|... |.
T Consensus 86 ~ssG~vrfyte~-G~ 99 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GV 99 (415)
T ss_pred ecccEEEEEecc-ch
Confidence 999999999974 44
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.83 E-value=2.8 Score=49.63 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=99.7
Q ss_pred CeEEEEECCCCc-e--EEeccCCCCeEEEEEee--C----CCCEEEEEEC----------CCcEEEEECCCCCCCCCCcc
Q 039790 238 GNIRILNIITAL-R--SLLRGHTQRVTDMAFFA--E----DVHLLASASV----------DGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 238 G~IrIWd~~~~~-~--~~l~~H~~~V~slaf~s--~----dg~~LaSgs~----------DgtV~IWdl~tg~~~~~~~~ 298 (1395)
..|++.|..+.. + ..|.. ...|.+++... . ...+|+.|.. .|.|.++++.....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~------ 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE------ 74 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc------
Confidence 357888877653 2 23332 23455544422 2 1467776643 28999999998410
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
....+ .+.......+.|++++-. ++. ++++.++.+.+++...... ......+. ....
T Consensus 75 -~~~~l-~~i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~-----------------l~~~~~~~-~~~~ 131 (321)
T PF03178_consen 75 -NNFKL-KLIHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKT-----------------LLKKAFYD-SPFY 131 (321)
T ss_dssp ----EE-EEEEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSS-----------------EEEEEEE--BSSS
T ss_pred -cceEE-EEEEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCccc-----------------chhhheec-ceEE
Confidence 00111 111222335667777665 444 7777788888877644320 01112222 2336
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cc-eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRK-ST-PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~-~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+.++... + ++|+.|...+.|.++..+. +. ....-+.....+++++.|. .+++.++. ++.+|.|.++....
T Consensus 132 i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l----~d~~~~i~-~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 132 ITSLSVF--K-NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL----VDEDTIIV-GDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEEE--T-TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-----SSSEEEE-EETTSEEEEEEE-S
T ss_pred EEEEecc--c-cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe----cCCcEEEE-EcCCCeEEEEEECC
Confidence 7777765 3 6899998888888774432 22 2222222223379999997 67766665 45999999998863
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.65 E-value=0.025 Score=41.95 Aligned_cols=39 Identities=28% Similarity=0.521 Sum_probs=32.7
Q ss_pred CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEE
Q 039790 409 STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 409 g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
+.++..+..|.. .|.++.|. +++.++++++ .|+.|++||
T Consensus 2 ~~~~~~~~~~~~-~i~~~~~~----~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTG-PVTSVAFS----PDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCC-ceeEEEEC----CCCCEEEEec-CCCeEEEcC
Confidence 456777888887 99999998 7888888866 999999996
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.042 Score=66.96 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=66.4
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeE-EEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVT-DMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~-slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
-.|..+.|+|.-.+||++..+|.|.+..++-..+.++.-|...|+ +++| .+||++|+.|-.||+|++.|+.++.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W-~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCW-RPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeee-cCCCCEEEEEecCCeEEEEEccCCC
Confidence 456778899999999999999999999988666777777777777 9999 8999999999999999999999987
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.56 E-value=8.5 Score=47.21 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=81.0
Q ss_pred EEEEEeeCCCCEEEEE-ECCC----cEEEEECCCCCCCCCCcccccceEE-EEEEecCCCCCccEEEEeCCCCeEEEEEe
Q 039790 261 TDMAFFAEDVHLLASA-SVDG----RFFIWNITEGPDEEDKPQILGKIVV-AIQILADGDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 261 ~slaf~s~dg~~LaSg-s~Dg----tV~IWdl~tg~~~~~~~~~~~~~i~-~l~~~~~~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
..+++ ++++++|+-+ +..| +|+|+|+.+|+. +. .+... ....+.|.+++..++.+..
T Consensus 127 ~~~~~-Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-----------l~d~i~~~-----~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 127 GGFSV-SPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-----------LPDGIENP-----KFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEE-TTTSSEEEEEEEETTSSEEEEEEEETTTTEE-----------EEEEEEEE-----ESEEEEECTTSSEEEEEEC
T ss_pred eeeeE-CCCCCEEEEEecCCCCceEEEEEEECCCCcC-----------cCCccccc-----ccceEEEeCCCCEEEEEEe
Confidence 35667 8999988755 3444 499999999861 11 11111 1123999999988887775
Q ss_pred CCe--------EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC--eEEEEEecCCCcEEEEEeCC---CcE
Q 039790 335 GNR--------ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE--ITELSMCQWLTTRLASASLD---GTV 401 (1395)
Q Consensus 335 ~~~--------ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~--V~slafspdg~~~LaSgs~D---g~I 401 (1395)
+.. -..++....+.. ......++...... ...+.++.|+..+++..... ..|
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~---------------~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v 254 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTP---------------QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV 254 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS----------------GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred CcccccccCCCCcEEEEEECCCC---------------hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence 542 222222122211 00113444443332 67888999984334444433 347
Q ss_pred EEEeCCCC----ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe--cCCCeEEEEECCCC
Q 039790 402 KIWDDRKS----TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG--PLNRELKIWASAEE 457 (1395)
Q Consensus 402 rIWDl~sg----~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G--s~Dg~I~IWDl~tg 457 (1395)
.+.|+..+ .....+..+.......+... .+.+++.+. ..++.|.-.++...
T Consensus 255 ~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-----~~~~yi~Tn~~a~~~~l~~~~l~~~ 311 (414)
T PF02897_consen 255 YLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-----GDRLYILTNDDAPNGRLVAVDLADP 311 (414)
T ss_dssp EEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-----TTEEEEEE-TT-TT-EEEEEETTST
T ss_pred EEEeccccCCCcCCcEEEeCCCCceEEEEEcc-----CCEEEEeeCCCCCCcEEEEeccccc
Confidence 77888774 23333333332133445443 444544432 13356666676655
No 370
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.43 E-value=2.4 Score=55.29 Aligned_cols=94 Identities=14% Similarity=0.245 Sum_probs=60.5
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcccccc-CCCCCccCccccccceEEEcccCCCeEEEEEecCC--CcE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFS-AEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL--TTR 391 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg--~~~ 391 (1395)
..|..|.+++.|..++.+|..+-.+..-..+.+....|. ......|+.......+. ...+...|..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCCCCCe
Confidence 346678999999888888876655555444333322221 12233454333332222 22456689999999985 368
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 039790 392 LASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg 409 (1395)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888899999999999764
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.03 E-value=5.2 Score=47.29 Aligned_cols=141 Identities=10% Similarity=0.096 Sum_probs=82.0
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST-PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~-~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
...+.|++++-. .| . |+.+. ++.|.+|++...+ .+..-..+....+.++... +.+++++. ....|.++
T Consensus 86 ~~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~------~~~I~vgD-~~~sv~~~ 154 (321)
T PF03178_consen 86 EVKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF------KNYILVGD-AMKSVSLL 154 (321)
T ss_dssp EESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE------TTEEEEEE-SSSSEEEE
T ss_pred eecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc------ccEEEEEE-cccCEEEE
Confidence 357889999876 33 4 44443 5889999998877 4444333332267777765 55777754 67778777
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC--CCCc-cee
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN--PAST-RMD 529 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~--~~~~-~~~ 529 (1395)
.+... ...+..+..... ..+...+.+-.++..++.+..+|.|+++.+..... .... ++.
T Consensus 155 ~~~~~-----------~~~l~~va~d~~-------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~ 216 (321)
T PF03178_consen 155 RYDEE-----------NNKLILVARDYQ-------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE 216 (321)
T ss_dssp EEETT-----------TE-EEEEEEESS--------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred EEEcc-----------CCEEEEEEecCC-------CccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccce
Confidence 55432 022222221111 11223455554556899999999999999974221 1223 678
Q ss_pred eeeeeeccccEEEE
Q 039790 530 YIAEFTVTMPILSL 543 (1395)
Q Consensus 530 ~i~~f~~~~~ils~ 543 (1395)
.+..|.....+.++
T Consensus 217 ~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 217 RISSFHLGDIVNSF 230 (321)
T ss_dssp EEEEEE-SS-EEEE
T ss_pred eEEEEECCCccceE
Confidence 88888888777777
No 372
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.95 E-value=5.3 Score=48.16 Aligned_cols=134 Identities=12% Similarity=0.129 Sum_probs=70.2
Q ss_pred CCeEEEEEecCCCcEEEEEeC--------------------CCcEEEEeCCCCceeEEecCCC-CCCeeEEEEeecCCCC
Q 039790 377 GEITELSMCQWLTTRLASASL--------------------DGTVKIWDDRKSTPLAVLRPYD-GHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~--------------------Dg~IrIWDl~sg~~l~tl~~h~-~~~V~sV~fs~~~~pd 435 (1395)
..-+++-|.|.. +.++|... ..++.+||+.+.+.++++.--. +..+..|.|.-+ |+
T Consensus 181 ~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~--P~ 257 (461)
T PF05694_consen 181 PFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHD--PD 257 (461)
T ss_dssp -----EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SS--TT
T ss_pred CCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCC--CC
Confidence 345677788876 67777653 4579999999999999998433 325778888722 55
Q ss_pred CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc---cc-------cccceEEEEeCCCCEEEE
Q 039790 436 HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL---ED-------AFFNQVVALNRAGLFLLA 505 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~---~~-------~~~~~~l~~S~dg~~LaS 505 (1395)
..+=++++-..++|..|--... ..|.....+......+... +. ..+..-+.+|-|.++|..
T Consensus 258 ~~~gFvg~aLss~i~~~~k~~~---------g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv 328 (461)
T PF05694_consen 258 ANYGFVGCALSSSIWRFYKDDD---------GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV 328 (461)
T ss_dssp --EEEEEEE--EEEEEEEE-ET---------TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred ccceEEEEeccceEEEEEEcCC---------CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence 5554444435666665544333 4466555555443221110 11 223446788899888765
Q ss_pred Ee-CCCeEEEEEcCCCCC
Q 039790 506 NA-KKNAIYAIHMDYGPN 522 (1395)
Q Consensus 506 gs-~Dg~I~iWdl~~g~~ 522 (1395)
+. .+|.|+.||+.....
T Consensus 329 s~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 329 SNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EETTTTEEEEEE-SSTTS
T ss_pred EcccCCcEEEEecCCCCC
Confidence 55 799999999987543
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.94 E-value=0.6 Score=60.60 Aligned_cols=96 Identities=18% Similarity=0.308 Sum_probs=64.9
Q ss_pred CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEE
Q 039790 186 NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMA 264 (1395)
Q Consensus 186 ~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~sla 264 (1395)
...++.++.+..|..+.. .....| .......|++-+.+| +||+|+.+|.||+||--+. ....|.+-..+|.+|+
T Consensus 551 ~n~lfriDpR~~~~k~v~---~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 551 DNSLFRIDPRLSGNKLVD---SQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGID 625 (794)
T ss_pred CCceEEeccCCCCCceee---cccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEE
Confidence 445666766655422111 111122 233456777777777 6999999999999995432 3456778889999999
Q ss_pred EeeCCCCEEEEEECCCcEEEEECC
Q 039790 265 FFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 265 f~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
. +.||+||+..|.. .|.+++..
T Consensus 626 v-t~DGkwilaTc~t-yLlLi~t~ 647 (794)
T PF08553_consen 626 V-TADGKWILATCKT-YLLLIDTL 647 (794)
T ss_pred e-cCCCcEEEEeecc-eEEEEEEe
Confidence 9 9999998877654 67777753
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=2.9 Score=47.12 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=50.0
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEeCCCC-ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLD-----GTVKIWDDRKS-TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~D-----g~IrIWDl~sg-~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+.|.+|. .||+|| .+|...-.| |.|-|||.+.+ ..+..|..|.- ....|.|. +||+.|+.++
T Consensus 113 RHfyGHG------vfs~dG-~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~Gi-GpHev~lm----~DGrtlvvan 180 (366)
T COG3490 113 RHFYGHG------VFSPDG-RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGI-GPHEVTLM----ADGRTLVVAN 180 (366)
T ss_pred ceeeccc------ccCCCC-cEEEeecCCCCCCCceEEEEecccccceecccccCCc-CcceeEEe----cCCcEEEEeC
Confidence 3455676 589999 566554333 67999999876 66778888865 78899999 9999998754
Q ss_pred cCCCeEEEE
Q 039790 444 PLNRELKIW 452 (1395)
Q Consensus 444 s~Dg~I~IW 452 (1395)
|-|..-
T Consensus 181 ---GGIeth 186 (366)
T COG3490 181 ---GGIETH 186 (366)
T ss_pred ---Cceecc
Confidence 555554
No 375
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.73 E-value=15 Score=47.98 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=73.8
Q ss_pred eEEEEEecCCCcEEEEEeC----------CCcEEEEeCCCCceeEEecCC--CCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 379 ITELSMCQWLTTRLASASL----------DGTVKIWDDRKSTPLAVLRPY--DGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~----------Dg~IrIWDl~sg~~l~tl~~h--~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
|.++.|..|...+++.|.. .|+|.||.+..+..+.....+ +| .|.++.- -+|++|+. -+
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G-av~aL~~-----fngkllA~---In 847 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG-AVYALVE-----FNGKLLAG---IN 847 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc-ceeehhh-----hCCeEEEe---cC
Confidence 4555688774478888763 578888887774444443322 23 6777665 36777764 56
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
..|+||++.+. +.++.=..+...+ ..+.+.-.|..++.|..-+.|.+..+...
T Consensus 848 ~~vrLye~t~~------------~eLr~e~~~~~~~---------~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 848 QSVRLYEWTTE------------RELRIECNISNPI---------IALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred cEEEEEEcccc------------ceehhhhcccCCe---------EEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 89999999876 4443333333222 24777888999999998888888777653
No 376
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.72 E-value=17 Score=46.12 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=38.3
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-Eec--cCCC--CeEE-EEEeeCCCCEEEEEE------CCCcEEEEECCCCCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLR--GHTQ--RVTD-MAFFAEDVHLLASAS------VDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~--~H~~--~V~s-laf~s~dg~~LaSgs------~DgtV~IWdl~tg~~~~ 294 (1395)
+..|+.++.||.|.-+|..+|++. .+. .+.. .+.+ -.+ .++. ++.+. .+|.|+.+|..+|+.+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v--~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV--VKGK-VITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE--ECCE-EEEeecccccCCCcEEEEEECCCCceeE
Confidence 456777888999999999998643 221 1211 1221 111 1344 44443 37899999999998543
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.68 E-value=1.7 Score=55.65 Aligned_cols=156 Identities=9% Similarity=0.053 Sum_probs=88.2
Q ss_pred CCEEEEEEecCCCEEEEEE------cCC--eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC-CcEEEE--
Q 039790 217 GLVLGRQIAVNRNYICYGL------KLG--NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD-GRFFIW-- 285 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs------~DG--~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D-gtV~IW-- 285 (1395)
..+...++++||+.+|+.- .|+ .|.+++........+.+. ..+.-.| +++|..|++.... ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsW-spDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSW-SLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceE-CCCCCceEEEecCcceEEEecc
Confidence 4677889999999998876 244 455555533333333333 3788889 8998888777543 223333
Q ss_pred ---------ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC
Q 039790 286 ---------NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 286 ---------dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~ 356 (1395)
++..+. ... .....+..+.|+|+|.++++... +.+++--......+. .
T Consensus 427 ~~~gql~~~~vd~ge---------------~~~--~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~-~---- 483 (591)
T PRK13616 427 PATGQLARTPVDASA---------------VAS--RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQ-Y---- 483 (591)
T ss_pred CCCceEEEEeccCch---------------hhh--ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCc-e----
Confidence 322221 000 22456889999999998887763 555552222211111 0
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~ 407 (1395)
.+.....+..+-...+.++.|..++ . |+.+..++...+|.+.
T Consensus 484 -------~l~~~~~l~~~l~~~~~~l~W~~~~-~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 484 -------ALTNPREVGPGLGDTAVSLDWRTGD-S-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred -------eecccEEeecccCCccccceEecCC-E-EEEEecCCCCceEEEe
Confidence 0111122223344456889999987 5 4455555555566543
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.46 E-value=1.3 Score=43.34 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=49.7
Q ss_pred eEEEEEe---cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 379 ITELSMC---QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 379 V~slafs---pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
|++|+++ -||.+.|+.||.|..||+|+ ....+..+.-+. .|++++-. .. ..++.+- .+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~--~v~~L~~~----~~-~~F~Y~l-~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETD--KVTSLCSL----GG-GRFAYAL-ANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEeccc--ceEEEEEc----CC-CEEEEEe-cCCEEEEEeCc
Confidence 4555554 45667999999999999997 447778887664 68999887 44 4455544 89999999854
No 379
>PHA02713 hypothetical protein; Provisional
Probab=94.32 E-value=2.4 Score=54.25 Aligned_cols=65 Identities=8% Similarity=0.087 Sum_probs=37.7
Q ss_pred CCcEEEEEecCC------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC
Q 039790 435 QHIVLITGGPLN------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 435 dg~~L~s~Gs~D------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
+|...+.|| .+ ..|..||..+. ..|..+..+....... -...-+|.+.+.|+.
T Consensus 463 ~~~IYv~GG-~~~~~~~~~~ve~Ydp~~~---------~~W~~~~~m~~~r~~~-----------~~~~~~~~iyv~Gg~ 521 (557)
T PHA02713 463 KDDIYVVCD-IKDEKNVKTCIFRYNTNTY---------NGWELITTTESRLSAL-----------HTILHDNTIMMLHCY 521 (557)
T ss_pred CCEEEEEeC-CCCCCccceeEEEecCCCC---------CCeeEccccCcccccc-----------eeEEECCEEEEEeee
Confidence 566666666 43 24677887762 2466555544332211 111237888899998
Q ss_pred CC--eEEEEEcCCC
Q 039790 509 KN--AIYAIHMDYG 520 (1395)
Q Consensus 509 Dg--~I~iWdl~~g 520 (1395)
++ .+..||..++
T Consensus 522 ~~~~~~e~yd~~~~ 535 (557)
T PHA02713 522 ESYMLQDTFNVYTY 535 (557)
T ss_pred cceeehhhcCcccc
Confidence 88 5666666554
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.14 E-value=1.6 Score=55.69 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=40.9
Q ss_pred cCCCEEEEEEcC------CeEEEEECCCCceEEecc--CCCCeEEEEEeeCCCCEEEEEECC------CcEEEEECCCCC
Q 039790 226 VNRNYICYGLKL------GNIRILNIITALRSLLRG--HTQRVTDMAFFAEDVHLLASASVD------GRFFIWNITEGP 291 (1395)
Q Consensus 226 pdg~~LasGs~D------G~IrIWd~~~~~~~~l~~--H~~~V~slaf~s~dg~~LaSgs~D------gtV~IWdl~tg~ 291 (1395)
..+.+++.|+.+ ..|..||..++....+.. +.....++++ -++.+.++||.| .++..||...+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~--~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV--LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE--ECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 345667777776 367788888874332221 2233445554 367889999999 357788888766
No 381
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.11 E-value=1.3 Score=43.38 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=59.5
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
..|+.|+.|..||+|+ . +..++.+. ..+.|.++.-... .++++|..+|
T Consensus 16 ~eLlvGs~D~~IRvf~-~---------~e~~~Ei~---------------------e~~~v~~L~~~~~-~~F~Y~l~NG 63 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFK-G---------DEIVAEIT---------------------ETDKVTSLCSLGG-GRFAYALANG 63 (111)
T ss_pred ceEEEecCCcEEEEEe-C---------CcEEEEEe---------------------cccceEEEEEcCC-CEEEEEecCC
Confidence 6789999999999988 1 12222221 2245555544444 6799999999
Q ss_pred eEEEEECCCCceEEeccCCCCeEEEEEeeCCC---CEEEEEECCCcEEE
Q 039790 239 NIRILNIITALRSLLRGHTQRVTDMAFFAEDV---HLLASASVDGRFFI 284 (1395)
Q Consensus 239 ~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg---~~LaSgs~DgtV~I 284 (1395)
+|-||+-.... ...+ ....+.+++++..++ .-|++|-.+|.|-+
T Consensus 64 TVGvY~~~~Rl-WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 64 TVGVYDRSQRL-WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEeCccee-eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 99999864432 2222 233477887755443 26888988888743
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=0.45 Score=61.60 Aligned_cols=104 Identities=19% Similarity=0.210 Sum_probs=69.5
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCce--EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 224 IAVNRNYICYGLKLGNIRILNIITALR--SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~IrIWd~~~~~~--~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
...-+.+++.|+..|.|-..|..+... +.-..-.++|++++| +.+|.+++.|-.+|.|.+||+..++
T Consensus 95 ~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvaf-n~dg~~l~~G~~~G~V~v~D~~~~k---------- 163 (1206)
T KOG2079|consen 95 SAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAF-NQDGSLLLAGLGDGHVTVWDMHRAK---------- 163 (1206)
T ss_pred eeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEe-cCCCceeccccCCCcEEEEEccCCc----------
Confidence 333556899999999999988877532 222234579999999 9999999999999999999999877
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEE
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRIL 339 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii 339 (1395)
.+..+...+.....+-.+.|..++..++.+-.+|.++
T Consensus 164 -~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~ 200 (1206)
T KOG2079|consen 164 -ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFW 200 (1206)
T ss_pred -ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceE
Confidence 2222222333333333445555555455444455433
No 383
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.05 E-value=7.4 Score=46.37 Aligned_cols=259 Identities=15% Similarity=0.124 Sum_probs=117.2
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEe----ccCCCCeEEEEEeeC----CCCEEEEEECC-------
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLL----RGHTQRVTDMAFFAE----DVHLLASASVD------- 279 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l----~~H~~~V~slaf~s~----dg~~LaSgs~D------- 279 (1395)
.-+.++|.|||+++++ -..|.|++++..... +..+ .........++| .+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~-~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAF-HPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE--TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCccccee-ccccCCCCEEEEEEEcccCCCCCc
Confidence 3468999999987765 569999999933222 1112 233456899999 44 24444443321
Q ss_pred -CcEEEEECCCCCCCCCCcccccceEEEEEEec---CCCCCccEEEEeCCCCeEEEEEeC-------------CeEEEEE
Q 039790 280 -GRFFIWNITEGPDEEDKPQILGKIVVAIQILA---DGDSVHPRVCWHPHKQEILMLAIG-------------NRILKID 342 (1395)
Q Consensus 280 -gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~---~~~~~v~~v~~sp~~~~lla~g~~-------------~~ii~~d 342 (1395)
..|.-|.+..+. . ........+.... ........+.|.|++..++++|.. ++|++++
T Consensus 81 ~~~v~r~~~~~~~----~--~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 81 DNRVVRFTLSDGD----G--DLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp EEEEEEEEEETTS----C--EEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred ceeeEEEeccCCc----c--ccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec
Confidence 234445554431 0 0000111111111 233344569999999655555542 3455555
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC-CCcEEEE-EeCCCcEEEEeCCCC-----------
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW-LTTRLAS-ASLDGTVKIWDDRKS----------- 409 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd-g~~~LaS-gs~Dg~IrIWDl~sg----------- 409 (1395)
..... -.+.++. . .........-.|+.. ...++|+|. | .++++ -+.|+.=.|--+..|
T Consensus 155 ~dG~~-----p~dnP~~-~-~~~~~~~i~A~GlRN-~~~~~~d~~tg-~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~ 225 (331)
T PF07995_consen 155 PDGSI-----PADNPFV-G-DDGADSEIYAYGLRN-PFGLAFDPNTG-RLWAADNGPDGWDEINRIEPGGNYGWPYCEGG 225 (331)
T ss_dssp TTSSB------TTSTTT-T-STTSTTTEEEE--SE-EEEEEEETTTT-EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSS
T ss_pred ccCcC-----CCCCccc-c-CCCceEEEEEeCCCc-cccEEEECCCC-cEEEEccCCCCCcEEEEeccCCcCCCCCCcCC
Confidence 32210 0000100 0 000011122223443 568999998 5 44433 223332222222211
Q ss_pred ------------------ceeEEecCCCCCCeeEEEEeecCC-C--CCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 410 ------------------TPLAVLRPYDGHPVNCVTFLIGPH-P--QHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 410 ------------------~~l~tl~~h~~~~V~sV~fs~~~~-p--dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
.++..+..|. .+..+.|..... | .|.++++ .-..+.|...++..+ ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~~~~~-~~~~~~i~~~~~~~~---------~~ 293 (331)
T PF07995_consen 226 PKYSGPPIGDAPSCPGFVPPVFAYPPHS--APTGIIFYRGSAFPEYRGDLFVA-DYGGGRIWRLDLDED---------GS 293 (331)
T ss_dssp CSTTSS-ECTGSS-TTS---SEEETTT----EEEEEEE-SSSSGGGTTEEEEE-ETTTTEEEEEEEETT---------EE
T ss_pred CCCCCCccccccCCCCcCccceeecCcc--ccCceEEECCccCccccCcEEEe-cCCCCEEEEEeeecC---------CC
Confidence 2445565553 577787762211 1 4455554 424566766666533 00
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
......+-... ..-...+.+.+||.++++...+|.||
T Consensus 294 ~~~~~~~~~~~--------~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 294 VTEEEEFLGGF--------GGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEEECTTS--------SS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccceEEccccC--------CCCceEEEEcCCCeEEEEECCCCeEe
Confidence 01111111111 10123588889999888888888775
No 384
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.03 E-value=0.24 Score=61.89 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=59.9
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+++++|+|.. ..|+.|-.-|.+.+|...+.+.-.....|.. +|..+.|| ++|..|+++. .-|.|.+|.+.-
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~~th~a-~i~~l~wS----~~G~~l~t~d-~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVVETHPA-PIQGLDWS----HDGTVLMTLD-NPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceeeeeccCCCC-CceeEEec----CCCCeEEEcC-CCceeEEEEeee
Confidence 5679999976 6888888889999999777766556667886 99999999 9999999954 889999998874
No 385
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.82 E-value=11 Score=41.62 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=43.4
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+++..+| ++.+++-..|+|...|..+|+.+.+++-... .|+|+||- .++-..|.+++
T Consensus 217 m~ID~eG-~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-qitsccFg---Gkn~d~~yvT~ 273 (310)
T KOG4499|consen 217 MTIDTEG-NLYVATFNGGTVQKVDPTTGKILLEIKLPTP-QITSCCFG---GKNLDILYVTT 273 (310)
T ss_pred ceEccCC-cEEEEEecCcEEEEECCCCCcEEEEEEcCCC-ceEEEEec---CCCccEEEEEe
Confidence 3444566 7888888889999999999999999998876 99999996 13334454443
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.77 E-value=12 Score=42.64 Aligned_cols=159 Identities=13% Similarity=0.097 Sum_probs=92.9
Q ss_pred CEEEEEEecCCCEEEEEE---cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE-CCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGL---KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN-ITEGPDE 293 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs---~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd-l~tg~~~ 293 (1395)
.+...++++||+.+|... ....++++.........+.+. .+..-.| .+++.+.+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~-d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSW-DPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccc-cCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 677889999999887765 334566666554444444333 6788889 77777766666666777774 333331
Q ss_pred CCCcccccceEEEEEEecCCCC-CccEEEEeCCCCeEEEEEe---CCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 294 EDKPQILGKIVVAIQILADGDS-VHPRVCWHPHKQEILMLAI---GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~-~v~~v~~sp~~~~lla~g~---~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
....+...... .|..+.++|+|.++++... ++.+++--..+...+.. ..+..+.
T Consensus 101 -----------~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~-----------~~l~~~~ 158 (253)
T PF10647_consen 101 -----------EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP-----------RRLTGPR 158 (253)
T ss_pred -----------eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc-----------ceeccce
Confidence 01111111111 7889999999998887773 34444443333222200 0111223
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeC-CCcEEE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASL-DGTVKI 403 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~-Dg~IrI 403 (1395)
.........+++++|..++ .+++.+.. ++.+..
T Consensus 159 ~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDS-TLVVLGRSAGGPVVR 192 (253)
T ss_pred EecccccCcceeeeecCCC-EEEEEeCCCCCceeE
Confidence 3333456789999999988 55555544 333433
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.64 E-value=7.7 Score=49.78 Aligned_cols=165 Identities=19% Similarity=0.291 Sum_probs=86.4
Q ss_pred CCCCeEEEEEeeCCCCEEEEEE------CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeE
Q 039790 256 HTQRVTDMAFFAEDVHLLASAS------VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEI 329 (1395)
Q Consensus 256 H~~~V~slaf~s~dg~~LaSgs------~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~l 329 (1395)
....+.+.++ +++|+.++..- .|+.-.||-...+.. ...+... . ....-.|+|+++.+
T Consensus 348 ~~~~vsspai-SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-------------~~~lt~g-~-~~t~PsWspDG~~l 411 (591)
T PRK13616 348 QMGNITSAAL-SRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-------------AVQVLEG-H-SLTRPSWSLDADAV 411 (591)
T ss_pred cccCcccceE-CCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-------------ceeeecC-C-CCCCceECCCCCce
Confidence 3346788999 89999887765 244434443322220 0111111 1 25678999998888
Q ss_pred EEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEE---EeC
Q 039790 330 LMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKI---WDD 406 (1395)
Q Consensus 330 la~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrI---WDl 406 (1395)
.++..++.+.++..... .+..|- ..++. ..... ...+.|..+.||||| .+|+... +|.|.+ -..
T Consensus 412 w~v~dg~~~~~v~~~~~-~gql~~------~~vd~--ge~~~--~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPA-TGQLAR------TPVDA--SAVAS--RVPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred EEEecCcceEEEeccCC-CceEEE------EeccC--chhhh--ccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeC
Confidence 87766555554433211 111110 00000 00111 235679999999999 5665554 577766 443
Q ss_pred CCCc-ee---EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 407 RKST-PL---AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 407 ~sg~-~l---~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
..|. .+ ..+..-.+..+.++.|. .++..+ ++. .++...+|.+.
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~----~~~~L~-V~~-~~~~~~v~~v~ 525 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWR----TGDSLV-VGR-SDPEHPVWYVN 525 (591)
T ss_pred CCCceeecccEEeecccCCccccceEe----cCCEEE-EEe-cCCCCceEEEe
Confidence 4453 11 11222222146889998 777754 433 34444556543
No 388
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.58 E-value=4.4 Score=44.45 Aligned_cols=90 Identities=11% Similarity=0.002 Sum_probs=59.7
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEe--CCCCc-----eeEEecC---CCCCCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWD--DRKST-----PLAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWD--l~sg~-----~l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
--+.++|+.+...+.++-+.+-+|.-|| ..+|. .+..++. ......-.++.. .+|...+++= ..+
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID----~eG~L~Va~~-ng~ 233 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID----TEGNLYVATF-NGG 233 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc----cCCcEEEEEe-cCc
Confidence 3457889888766777777888898888 44553 3333332 111122334444 5677666654 778
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR 484 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~ 484 (1395)
+|.-.|..+| +.+.+++.....+.+
T Consensus 234 ~V~~~dp~tG------------K~L~eiklPt~qits 258 (310)
T KOG4499|consen 234 TVQKVDPTTG------------KILLEIKLPTPQITS 258 (310)
T ss_pred EEEEECCCCC------------cEEEEEEcCCCceEE
Confidence 9999999999 999999988766543
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.27 E-value=3.1 Score=52.94 Aligned_cols=117 Identities=9% Similarity=0.129 Sum_probs=77.7
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCceE---EeccCCCCeEEEEEe-eCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 222 RQIAVNRNYICYGLKLGNIRILNIITALRS---LLRGHTQRVTDMAFF-AEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 222 va~Spdg~~LasGs~DG~IrIWd~~~~~~~---~l~~H~~~V~slaf~-s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
+.-|.-++..++-+....+.|||...+.+. .| ...+.|.++.|. .++++.+++.|..+.|.+|--........-|
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 334444554444455568999999988522 23 457889999994 4789999999999999999654322111111
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEc
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDS 343 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~ 343 (1395)
.=..+..+.+.......+...+|..+| .+++|.++.+.+++.
T Consensus 114 --~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 114 --SWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGSGNQLFVFDK 155 (631)
T ss_pred --ccceeEEEEeecCCCCCccceeEecCC--eEEEEeCCEEEEECC
Confidence 112445555555556778899999998 566777777777653
No 390
>PRK10115 protease 2; Provisional
Probab=93.27 E-value=37 Score=44.69 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=47.6
Q ss_pred CCEEEEEEecCCCEEEEEEcC-----CeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECC------CcEE
Q 039790 217 GLVLGRQIAVNRNYICYGLKL-----GNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVD------GRFF 283 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~D-----G~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~D------gtV~ 283 (1395)
-.+..+.|+|||++|+++... ..|+|.|+.+|. ...+.+ .-..++| .+|++.|+.+..+ ..|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w-~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVW-ANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEE-eeCCCEEEEEEecCCCCCCCEEE
Confidence 345667899999999987442 358899998875 222222 1256999 7787766555432 3578
Q ss_pred EEECCCCC
Q 039790 284 IWNITEGP 291 (1395)
Q Consensus 284 IWdl~tg~ 291 (1395)
.|++.++.
T Consensus 203 ~h~lgt~~ 210 (686)
T PRK10115 203 RHTIGTPA 210 (686)
T ss_pred EEECCCCh
Confidence 88888773
No 391
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.23 E-value=2 Score=52.89 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=87.5
Q ss_pred CCEEEEEEecCCCEE-EEEE--cCCeEEEEECCCCceEEeccCCCCeEEEEEeeC---CCCEEEEEECCCcEEEEECCCC
Q 039790 217 GLVLGRQIAVNRNYI-CYGL--KLGNIRILNIITALRSLLRGHTQRVTDMAFFAE---DVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 217 ~~V~~va~Spdg~~L-asGs--~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~---dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
..|.+++|. ||+.+ .+.. .+|.+++=|- ..-|.-.-|..+.|.+. +...|+..-....|.||.+.-.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 467788886 44443 3332 2333322111 22334456999999432 2224555566778999998754
Q ss_pred CCCCCCcccccceEEEE--EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 291 PDEEDKPQILGKIVVAI--QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l--~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
..+. .+++..- .+.....-.-..+.|||....+.+....+.-+..........
T Consensus 93 ~~e~------~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr------------------- 147 (671)
T PF15390_consen 93 TTER------NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR------------------- 147 (671)
T ss_pred cccc------ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce-------------------
Confidence 3222 1222211 111111122335889999986666666665555544332221
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
++.--...+.|.|.+|..||.++++..+..=.-+|||-..
T Consensus 148 VkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 148 VKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 2222246678999999999955555555555678999543
No 392
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.28 Score=60.11 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=64.6
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCee-EEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVN-CVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~-sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
...|.-+.|+|.. .+||.+..+|.|-+..+. ++.+.++.-|+. .++ +++|. |||+.|+++ -.||+|+|-|+
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~qRlwtip~p~~-~v~~sL~W~----~DGkllaVg-~kdG~I~L~Dv 91 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQRLWTIPIPGE-NVTASLCWR----PDGKLLAVG-FKDGTIRLHDV 91 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEec-cceeEeccCCCC-ccceeeeec----CCCCEEEEE-ecCCeEEEEEc
Confidence 3467889999987 799999999999999987 888999987765 666 99998 999999885 49999999999
Q ss_pred CCC
Q 039790 455 AEE 457 (1395)
Q Consensus 455 ~tg 457 (1395)
.++
T Consensus 92 e~~ 94 (665)
T KOG4640|consen 92 EKG 94 (665)
T ss_pred cCC
Confidence 887
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=0.35 Score=62.57 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=74.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
.+++.|+..|.|-..|.+..-+-.....+...+|++++|+ -+|..++. |-.+|.|.+||+..+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn----~dg~~l~~-G~~~G~V~v~D~~~~------------ 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN----QDGSLLLA-GLGDGHVTVWDMHRA------------ 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec----CCCceecc-ccCCCcEEEEEccCC------------
Confidence 5889999999999888765311112222333499999998 88888877 458999999999988
Q ss_pred cEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 470 KCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 470 ~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+.++.+..++..... +.. +.+..++..++++...|. +|.+...
T Consensus 163 k~l~~i~e~~ap~t~-----vi~-v~~t~~nS~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTG-----VIF-VGRTSQNSKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred cceeeeeecCCccce-----EEE-EEEeCCCcEEEEccCCCc--eEEEEec
Confidence 888888877765433 222 344455667888888886 5766553
No 394
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.94 E-value=20 Score=40.84 Aligned_cols=200 Identities=13% Similarity=0.105 Sum_probs=113.5
Q ss_pred eeCCC-CCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 212 YISDP-GLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 212 l~~h~-~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
+.+|. ..|..+...-+-.++..|-.--..-+|+.... ....+-.-.+-+.++.| .+++...+..+.-++|.|+
T Consensus 37 ~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~v---se~yvyvad~ssGL~IvDI 113 (370)
T COG5276 37 YVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRV---SEEYVYVADWSSGLRIVDI 113 (370)
T ss_pred EeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEe---cccEEEEEcCCCceEEEec
Confidence 44454 44444444433334433322222334554421 12223334556788888 4567777888888999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
.+... |.. +.++ ..+ .+.-+|.-.|++.+++..++.++++|.....+.. .
T Consensus 114 S~P~s----P~~-------~~~l-nt~--gyaygv~vsGn~aYVadlddgfLivdvsdpssP~---------------l- 163 (370)
T COG5276 114 STPDS----PTL-------IGFL-NTD--GYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ---------------L- 163 (370)
T ss_pred cCCCC----cce-------eccc-cCC--ceEEEEEecCCEEEEeeccCcEEEEECCCCCCce---------------e-
Confidence 98651 110 1111 111 2345566677788888889999999987644321 0
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST---PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~---~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
..........-+.++.| | ++-..+..|+-+.|-|+.... .+.... ... .++++..+ ++..+++. .
T Consensus 164 -agrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~-g~~sv~vs----dnr~y~vv-y- 231 (370)
T COG5276 164 -AGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGP-GTYSVSVS----DNRAYLVV-Y- 231 (370)
T ss_pred -eeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCC-ceEEEEec----CCeeEEEE-c-
Confidence 11222233344677776 3 567777789999999998753 222222 222 58888887 55555554 3
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
|--+.+-|..+.
T Consensus 232 -~egvlivd~s~~ 243 (370)
T COG5276 232 -DEGVLIVDVSGP 243 (370)
T ss_pred -ccceEEEecCCC
Confidence 455777777655
No 395
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.87 E-value=42 Score=44.22 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=67.8
Q ss_pred CCCEEEEeCcCCCCCee-ee--CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEE
Q 039790 167 APPVRLRSSKVPKGRHL-IG--NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRIL 243 (1395)
Q Consensus 167 Dg~Vrlwd~~sp~Gr~L-~G--~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIW 243 (1395)
.+++.+|-....+|... .+ ++.+|.+.....|+....+ .....+-+...-..|+.+-++| +|++|+.-|.=.+.
T Consensus 256 ~~t~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~--~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi 332 (1096)
T KOG1897|consen 256 QSTIVCYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGL--DLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLI 332 (1096)
T ss_pred CceEEEcccccCCccEEEEecCCCcEEEEEeecccccccce--EEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeE
Confidence 45666666555555544 44 4466666665555543322 1122333455555666555555 78889888777777
Q ss_pred ECCCCc--------eEEeccCCCCeEEEEEeeCC---CCEEEEEE---CCCcEEEEECCC
Q 039790 244 NIITAL--------RSLLRGHTQRVTDMAFFAED---VHLLASAS---VDGRFFIWNITE 289 (1395)
Q Consensus 244 d~~~~~--------~~~l~~H~~~V~slaf~s~d---g~~LaSgs---~DgtV~IWdl~t 289 (1395)
.+.+.. +.++ ..-++|.+++.-..+ +..|+||+ .||++||..-.-
T Consensus 333 ~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi 391 (1096)
T KOG1897|consen 333 KLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGI 391 (1096)
T ss_pred EccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccc
Confidence 766531 1122 233588888874333 34567765 488999876543
No 396
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.69 E-value=23 Score=40.67 Aligned_cols=212 Identities=10% Similarity=0.084 Sum_probs=111.8
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEE---------------eccCCCCeEEEE-EeeCCCCEEEEEECCCcE
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSL---------------LRGHTQRVTDMA-FFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~---------------l~~H~~~V~sla-f~s~dg~~LaSgs~DgtV 282 (1395)
|..+...++-+.|++-+ ||.++++++..-.... .......+...+ -....+...+.+...++|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 88888888777666544 5999999987631111 111222333333 112344445555556699
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.||.......... .....+. -...+..++|. +..+++|..+....++.........+......
T Consensus 117 ~i~~~~~~~~~f~------~~~ke~~----lp~~~~~i~~~---~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~---- 179 (275)
T PF00780_consen 117 LIYEWNDPRNSFS------KLLKEIS----LPDPPSSIAFL---GNKICVGTSKGFYLIDLNTGSPSELLDPSDSS---- 179 (275)
T ss_pred EEEEEECCccccc------ceeEEEE----cCCCcEEEEEe---CCEEEEEeCCceEEEecCCCCceEEeCccCCc----
Confidence 9998876421000 1111221 12556678888 23566666777888887643222111111000
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE--EecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA--VLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~--tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
............+..+.... + .+|++ .|..-.+.| ..|...+ .+.-. . .+.++++. ..||+
T Consensus 180 ----~~~~~~~~~~~~~~~~~~~~-~-e~Ll~--~~~~g~fv~-~~G~~~r~~~i~W~-~-~p~~~~~~------~pyli 242 (275)
T PF00780_consen 180 ----SSFKSRNSSSKPLGIFQLSD-N-EFLLC--YDNIGVFVN-KNGEPSRKSTIQWS-S-APQSVAYS------SPYLI 242 (275)
T ss_pred ----chhhhcccCCCceEEEEeCC-c-eEEEE--ecceEEEEc-CCCCcCcccEEEcC-C-chhEEEEE------CCEEE
Confidence 00001111222344444433 3 45554 344444444 3454443 33322 2 56777775 45888
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
+.+ ++.|.||++.++ ++++++.+..
T Consensus 243 ~~~--~~~iEV~~~~~~------------~lvQ~i~~~~ 267 (275)
T PF00780_consen 243 AFS--SNSIEVRSLETG------------ELVQTIPLPN 267 (275)
T ss_pred EEC--CCEEEEEECcCC------------cEEEEEECCC
Confidence 755 567999999999 9999998655
No 397
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.54 E-value=4.7 Score=48.57 Aligned_cols=151 Identities=15% Similarity=0.221 Sum_probs=90.1
Q ss_pred EEEEEeeCCCCEEE-EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC-------CeEEEE
Q 039790 261 TDMAFFAEDVHLLA-SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-------QEILML 332 (1395)
Q Consensus 261 ~slaf~s~dg~~La-Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-------~~lla~ 332 (1395)
..+-.+..+..+|. .|+.-..++--|+..|+ .+.. ..-++.. .|.|.|+. ..-+++
T Consensus 470 ~K~mlh~~dssli~~dg~~~~kLykmDIErGk-----------vvee---W~~~ddv--vVqy~p~~kf~qmt~eqtlvG 533 (776)
T COG5167 470 EKIMLHDNDSSLIYLDGGERDKLYKMDIERGK-----------VVEE---WDLKDDV--VVQYNPYFKFQQMTDEQTLVG 533 (776)
T ss_pred hhceeecCCcceEEecCCCcccceeeecccce-----------eeeE---eecCCcc--eeecCCchhHHhcCccceEEe
Confidence 33344345555544 34445567777777776 2222 2222222 45666643 245677
Q ss_pred EeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE-----EEEEecCCCcEEEEEeCCCcEEEEeCC
Q 039790 333 AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT-----ELSMCQWLTTRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 333 g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~-----slafspdg~~~LaSgs~Dg~IrIWDl~ 407 (1395)
-++..+.++|.+..+.. +... .....++ |..-... .++|.||..|-||+|| |
T Consensus 534 lS~~svFrIDPR~~gNK-------------------i~v~-esKdY~tKn~Fss~~tTes--GyIa~as~kGDirLyD-R 590 (776)
T COG5167 534 LSDYSVFRIDPRARGNK-------------------IKVV-ESKDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYD-R 590 (776)
T ss_pred ecccceEEecccccCCc-------------------eeee-eehhccccccccccccccC--ceEEEecCCCceeeeh-h
Confidence 78889999998665421 1111 1112222 2222233 3999999999999999 4
Q ss_pred CCceeE-EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 408 KSTPLA-VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 408 sg~~l~-tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
-|...+ -+.+-. ..|..|..+ .+|.+++++| ...|.+-|+.-.
T Consensus 591 ig~rAKtalP~lG-~aIk~idvt----a~Gk~ilaTC--k~yllL~d~~ik 634 (776)
T COG5167 591 IGKRAKTALPGLG-DAIKHIDVT----ANGKHILATC--KNYLLLTDVPIK 634 (776)
T ss_pred hcchhhhcCcccc-cceeeeEee----cCCcEEEEee--cceEEEEecccc
Confidence 444333 344444 489999998 8999999877 567888887644
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.45 E-value=12 Score=45.25 Aligned_cols=233 Identities=12% Similarity=0.083 Sum_probs=95.0
Q ss_pred CCCEEEEEE-cCCeEEEEECCCC----c-eEEecc---C--CCC--eEEEEEeeCCCCEEEEEECC------CcEEEEEC
Q 039790 227 NRNYICYGL-KLGNIRILNIITA----L-RSLLRG---H--TQR--VTDMAFFAEDVHLLASASVD------GRFFIWNI 287 (1395)
Q Consensus 227 dg~~LasGs-~DG~IrIWd~~~~----~-~~~l~~---H--~~~--V~slaf~s~dg~~LaSgs~D------gtV~IWdl 287 (1395)
+.++|+..+ ..+.|+|+|+.+. . .+.+.. + .+- -..+.. -++|.+++|+-.| |.+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc-lp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHC-LPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeee-cCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 467777776 6789999999864 1 222221 1 111 111111 4678888886432 45777776
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe--------------------CCeEEEEEcCCCC
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI--------------------GNRILKIDSNRVG 347 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~--------------------~~~ii~~d~~~~~ 347 (1395)
++.+ ..-....-.......+.+-|.|..+.++++.. +..+.+||...
T Consensus 165 ~tf~-----------v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-- 231 (461)
T PF05694_consen 165 ETFE-----------VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-- 231 (461)
T ss_dssp TT-------------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT--
T ss_pred cccc-----------ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC--
Confidence 6543 11111111122345567888887776665543 23344444322
Q ss_pred ccccccCCCCCccCccccccceEEEccc--CCCeEEEEEecC--CCcEEEEEeCCCcEEEE-eCCCCc----eeEEecCC
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKH--DGEITELSMCQW--LTTRLASASLDGTVKIW-DDRKST----PLAVLRPY 418 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h--~~~V~slafspd--g~~~LaSgs~Dg~IrIW-Dl~sg~----~l~tl~~h 418 (1395)
.+.++.+.-- ......|.|..+ ...-|+.+-..+.|..| ....+. .+-.+...
T Consensus 232 ------------------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 232 ------------------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp ------------------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred ------------------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 1113333211 123556666443 32334444445555444 323331 12222111
Q ss_pred -----------------CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 419 -----------------DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 419 -----------------~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
-. -|+.+..| .|.++|..++-.+|.||.||+... ...+.+..+..-+..
T Consensus 294 ~v~~~~lp~ml~~~~~~P~-LitDI~iS----lDDrfLYvs~W~~GdvrqYDISDP---------~~Pkl~gqv~lGG~~ 359 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPP-LITDILIS----LDDRFLYVSNWLHGDVRQYDISDP---------FNPKLVGQVFLGGSI 359 (461)
T ss_dssp E--SS---GGGGGG-EE-------EEE-----TTS-EEEEEETTTTEEEEEE-SST---------TS-EEEEEEE-BTTT
T ss_pred ccCcccccccccccccCCC-ceEeEEEc----cCCCEEEEEcccCCcEEEEecCCC---------CCCcEEeEEEECcEe
Confidence 12 47899999 999999998888999999999876 445666555433221
Q ss_pred cccccccc--------cceEEEEeCCCCEEEEE
Q 039790 482 ELRLEDAF--------FNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 482 i~~~~~~~--------~~~~l~~S~dg~~LaSg 506 (1395)
. ...... -.+.+.+|.||+.|...
T Consensus 360 ~-~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 360 R-KGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp T--B--TTS------S----EEE-TTSSEEEEE
T ss_pred c-cCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 1 101111 12467788888776554
No 399
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.36 E-value=0.19 Score=54.77 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=40.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE-ecCCCeEEEEECCC
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG-GPLNRELKIWASAE 456 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~-Gs~Dg~I~IWDl~t 456 (1395)
.+..+++.||.||.|++.-++.+.....|....+..+..+ ..+++|.++ -|.|..++.|++..
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv----~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVV----GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEe----cCCceEEeeccccchhhhhcchhh
Confidence 5899999999999999988887777766763244444443 334444443 02555555565543
No 400
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.30 E-value=20 Score=45.59 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=37.5
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-EeccC-CCCeE----------EEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLRGH-TQRVT----------DMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~~H-~~~V~----------slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+..|+.++.++.|+-+|..+|++. .+... ...+. .+++ .+..++.++.|+.|.-.|..+|+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCC
Confidence 456777777888888898888533 22211 01111 1233 23456677788888888888887
No 401
>PHA03098 kelch-like protein; Provisional
Probab=92.17 E-value=4 Score=52.00 Aligned_cols=52 Identities=6% Similarity=-0.081 Sum_probs=27.0
Q ss_pred ecCCCEEEEEEcCC------eEEEEECCCCceEEeccC---CCCeEEEEEeeCCCCEEEEEECC
Q 039790 225 AVNRNYICYGLKLG------NIRILNIITALRSLLRGH---TQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 225 Spdg~~LasGs~DG------~IrIWd~~~~~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
..++..++.|+.++ .+..||..++.-..+..- ......+. -++.+++.||.+
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~---~~~~lyv~GG~~ 352 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV---FNNRIYVIGGIY 352 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE---ECCEEEEEeCCC
Confidence 34666777776542 466788777643333221 11112222 256666667654
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.16 E-value=12 Score=42.86 Aligned_cols=190 Identities=7% Similarity=0.016 Sum_probs=111.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eE--EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RS--LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~--~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
+-...|.++.|+|+.+.|++......-.||=-..|. +. .+.+- ..--.|.| -.++.+.++-=.++.++++.+..+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Iey-ig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEY-IGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEE-ecCCEEEEEehhcceEEEEEEcCC
Confidence 444559999999999988888777766666545553 33 23332 22345777 677788888888999999988876
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
...... ...-..+....+.....-.++|.+.+..++++-..+-+.++......... ....-... ..
T Consensus 161 t~~~~~----~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l--------~~~~~~~~--~~ 226 (316)
T COG3204 161 TTVISA----KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL--------SVHASLDP--TA 226 (316)
T ss_pred ccEEec----cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc--------ccccccCc--cc
Confidence 411100 01111222333334555679999999888887766655554433211110 00000000 00
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG 420 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~ 420 (1395)
...-.-..|..+.|++..+++|+-+..++.+.-.|. .|.++..+.-+.+
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g 275 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKG 275 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccC
Confidence 000011347788898776678888888998888885 4555655554443
No 403
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.00 E-value=13 Score=42.04 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=45.5
Q ss_pred EEecCCCEEEEEEcC-----CeEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 223 QIAVNRNYICYGLKL-----GNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 223 a~Spdg~~LasGs~D-----G~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.||+||.+|...-.| |.|-|||...+ .+..+..|.-.-..|.| ..||..|+.+. |-|...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~l-m~DGrtlvvan--GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTL-MADGRTLVVAN--GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEE-ecCCcEEEEeC--Cceecc
Confidence 389999988765333 78999999876 35577778777788999 89999888764 455554
No 404
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.96 E-value=54 Score=43.65 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc------hHHHHHHHHHHHH
Q 039790 1037 EKLERDRMQQITNLITNTINKDL------PAILEKTLKKEIA 1072 (1395)
Q Consensus 1037 ~~~~~~rq~~ll~~vs~~l~~~~------~~~~E~~l~~ei~ 1072 (1395)
..+.++..+.|..-|.++|+... ..+-|++|+.+|.
T Consensus 1466 ~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp 1507 (1758)
T KOG0994|consen 1466 MEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELP 1507 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCC
Confidence 33445566788888888887543 3455666666654
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.90 E-value=27 Score=40.12 Aligned_cols=206 Identities=11% Similarity=0.011 Sum_probs=108.6
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
.|.-|...+.+...+... +-+|...-.. ...+.|-...|.++.| +++.+.|.+......-.||=-.+|.
T Consensus 47 ~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTy-np~~rtLFav~n~p~~iVElt~~Gd----- 118 (316)
T COG3204 47 PCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTY-NPDTRTLFAVTNKPAAIVELTKEGD----- 118 (316)
T ss_pred eeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceee-CCCcceEEEecCCCceEEEEecCCc-----
Confidence 333344444344444444 4455544321 2224555566999999 7888888888777777777766666
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
.+..+.+.+-++ .-.|.|...+.+.++--.+..++.+-......... .....-.+.......
T Consensus 119 ------lirtiPL~g~~D--pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~----------~~~~~i~L~~~~k~N 180 (316)
T COG3204 119 ------LIRTIPLTGFSD--PETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS----------AKVQKIPLGTTNKKN 180 (316)
T ss_pred ------eEEEecccccCC--hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe----------ccceEEeccccCCCC
Confidence 344443333222 23567766665555544555555554432211100 000000011122225
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---eeEEecCCCC------CCeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKST---PLAVLRPYDG------HPVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~---~l~tl~~h~~------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
...-.++|.+.+ ..|..+-.-.-++||.+..+. .++....+.. ..|.++.|. +....|++-+..++
T Consensus 181 ~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~----~~~~~LLVLS~ESr 255 (316)
T COG3204 181 KGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN----AITNSLLVLSDESR 255 (316)
T ss_pred cCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec----CCCCcEEEEecCCc
Confidence 567789999998 566666666667776654322 1111111211 147778886 44444444455778
Q ss_pred eEEEEECCC
Q 039790 448 ELKIWASAE 456 (1395)
Q Consensus 448 ~I~IWDl~t 456 (1395)
.|.-.|...
T Consensus 256 ~l~Evd~~G 264 (316)
T COG3204 256 RLLEVDLSG 264 (316)
T ss_pred eEEEEecCC
Confidence 777777654
No 406
>PHA02713 hypothetical protein; Provisional
Probab=91.88 E-value=4 Score=52.27 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=37.7
Q ss_pred cCCCEEEEEEcC------CeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECCC-----cEEEEECCCCC
Q 039790 226 VNRNYICYGLKL------GNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVDG-----RFFIWNITEGP 291 (1395)
Q Consensus 226 pdg~~LasGs~D------G~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~Dg-----tV~IWdl~tg~ 291 (1395)
.++...+.||.+ ..+..||..++.-..+.. .......+. -+|.+.+.||.++ +|..||..+..
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~---~~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV---IDDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE---ECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 467777777754 347778887764322221 111122223 3778888888764 47889988765
No 407
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.86 E-value=17 Score=46.34 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=90.8
Q ss_pred CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCc
Q 039790 238 GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVH 317 (1395)
Q Consensus 238 G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v 317 (1395)
-.|+||++.+..+..+.-..+.+..+.| + +...|++...||+++||++..... .... +-........+
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgW-s-~~eeLI~v~k~g~v~Vy~~~ge~i-e~~s---------vg~e~~~~~I~ 131 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGW-S-DDEELICVQKDGTVHVYGLLGEFI-ESNS---------VGFESQMSDIV 131 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecc-c-CCceEEEEeccceEEEeecchhhh-cccc---------cccccccCcee
Confidence 3588999887665544444448889999 4 456788899999999999875331 1100 00000011122
Q ss_pred cEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccc-c-CCCCCccCccccccc---------------------------
Q 039790 318 PRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERF-S-AEEPLKCPVDELING--------------------------- 368 (1395)
Q Consensus 318 ~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~-s-~~~~~~~~~~~~~~~--------------------------- 368 (1395)
.+..|+ . -+++...++.++.+........... . +.....+.-|....+
T Consensus 132 ec~~f~-~--GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q 208 (829)
T KOG2280|consen 132 ECRFFH-N--GVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ 208 (829)
T ss_pred EEEEec-C--ceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccc
Confidence 223333 2 2555555555555543221100000 0 000001111111111
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
...+..-...+..++.|+.. .+|+-=..+|.|.+-++...+++..+..........++|+
T Consensus 209 ~~~~~~~~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 209 LHALSWPNSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred ccccCCCCceEEEEEEcCCc-ceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence 11111112456677788877 7888888889888888877777777763222233455554
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=3.1 Score=54.55 Aligned_cols=112 Identities=5% Similarity=-0.076 Sum_probs=69.8
Q ss_pred CEEEEEEecCCCEEEEEE--cCCeEEEEECCCCc------eEEeccC------CCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 218 LVLGRQIAVNRNYICYGL--KLGNIRILNIITAL------RSLLRGH------TQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs--~DG~IrIWd~~~~~------~~~l~~H------~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.|..+.+.+|++..++-. .+-.|..||+..-+ ...|..| ..-+.++.|++.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 345556667777655543 33478889987631 1222222 234567778443344567788899999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDS 343 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~ 343 (1395)
|..+..-.. .. .........++++|+|.|..++++-..+.++.|..
T Consensus 182 V~~~~~~~~-------------~v-~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 182 VKSTKQLAQ-------------NV-TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhh-------------hh-cccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence 887764320 00 01223456789999999998888888888887755
No 409
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.78 E-value=35 Score=38.96 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=105.7
Q ss_pred eeeeeCCC-CCEEEEEEecCCCEEEEEEcCC--eEEEEECCCCceEEeccCCCCeE--EEEEeeCCCCEEEEEECCCcEE
Q 039790 209 ITKYISDP-GLVLGRQIAVNRNYICYGLKLG--NIRILNIITALRSLLRGHTQRVT--DMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 209 i~~l~~h~-~~V~~va~Spdg~~LasGs~DG--~IrIWd~~~~~~~~l~~H~~~V~--slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
+..+..+. ...-++.|..+|.++-+.+.-| .|+.+|+.++.......-....+ .|+. -++.+..-.-.+|...
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~--~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI--LGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE--ETTEEEEEESSSSEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE--ECCEEEEEEecCCeEE
Confidence 34444332 3345677878888887777666 79999999985432221112222 3333 1334444455678899
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+||..+-+ .+..+... ..-..++ .++..++.+-..+.+..+|.......
T Consensus 114 ~yd~~tl~-----------~~~~~~y~----~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~-------------- 162 (264)
T PF05096_consen 114 VYDPNTLK-----------KIGTFPYP----GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV-------------- 162 (264)
T ss_dssp EEETTTTE-----------EEEEEE-S----SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE--------------
T ss_pred EEccccce-----------EEEEEecC----CcceEEE--cCCCEEEEECCccceEEECCcccceE--------------
Confidence 99998755 22222222 2233455 56777888888888888886543211
Q ss_pred ccccceEEEc--ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC------------C--CCCCeeEEE
Q 039790 364 ELINGVQLVG--KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP------------Y--DGHPVNCVT 427 (1395)
Q Consensus 364 ~~~~~~~~l~--~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~------------h--~~~~V~sV~ 427 (1395)
..+.+.. .--..++.+.|- +| .+.|=.-....|...|..+|+.+..+.. + ...-.+.++
T Consensus 163 ---~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIA 237 (264)
T PF05096_consen 163 ---RTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIA 237 (264)
T ss_dssp ---EEEE-EETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEE
T ss_pred ---EEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEe
Confidence 0011111 111245666665 34 5555555666778888888888776631 1 122678999
Q ss_pred EeecCCCCCcEEEEEe
Q 039790 428 FLIGPHPQHIVLITGG 443 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~G 443 (1395)
|. |....|+.+|
T Consensus 238 yd----~~~~~l~vTG 249 (264)
T PF05096_consen 238 YD----PETDRLFVTG 249 (264)
T ss_dssp EE----TTTTEEEEEE
T ss_pred Ee----CCCCEEEEEe
Confidence 98 7777777768
No 410
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.74 E-value=0.55 Score=51.31 Aligned_cols=103 Identities=10% Similarity=0.060 Sum_probs=55.2
Q ss_pred cEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcE--EEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 390 TRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIV--LITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~--L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
..++.|+.||.|.+|.... |.....+..-. ....+-+ |.++. +..++..||.||.|++.-.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~--e~i~~~I-----p~~~~~~~~c~~~~dg~ir~~n~~p~--------- 134 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE--ESIDLGI-----PNGRDSSLGCVGAQDGRIRACNIKPN--------- 134 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhccc--ccceecc-----ccccccceeEEeccCCceeeeccccC---------
Confidence 5789999999999998652 11111111111 1222233 34443 5555669999999999765
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE--eCCCeEEEEEcCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN--AKKNAIYAIHMDY 519 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg--s~Dg~I~iWdl~~ 519 (1395)
+.+...-.|..... .-+.....+.+|+.. +.|..++.|++..
T Consensus 135 ---k~~g~~g~h~~~~~--------e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 135 ---KVLGYVGQHNFESG--------EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ---ceeeeeccccCCCc--------ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 54444443431100 013333444555555 5666666666654
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.56 E-value=10 Score=48.53 Aligned_cols=123 Identities=12% Similarity=0.181 Sum_probs=76.4
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
..-+.-+.-+ +..+.-+...++.|||.+.+.....-. ...+ .|..+.|.. .|||+.+++.| ..+.|.+|--...
T Consensus 32 ~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~-~I~dLDWts--t~d~qsiLaVG-f~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 32 PSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDD-PIRDLDWTS--TPDGQSILAVG-FPHHVLLYTQLRY 106 (631)
T ss_pred cceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCC-ceeeceeee--cCCCCEEEEEE-cCcEEEEEEccch
Confidence 3344444433 333333344569999999887554333 2233 899999973 38999999999 8999999865321
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.-......|..++.+...... ..-+....|-.+|.++++. ++.++|++-
T Consensus 107 ---dy~~~~p~w~~i~~i~i~~~T------~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 107 ---DYTNKGPSWAPIRKIDISSHT------PHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred ---hhhcCCcccceeEEEEeecCC------CCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 111223567777777543211 0111247788999988766 467888863
No 412
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.54 E-value=54 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.5
Q ss_pred CCC---EEEEEeCCCeEEEEEcCCCCC
Q 039790 499 AGL---FLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 499 dg~---~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
+|. .|+.++++|.++++|-.+|+.
T Consensus 455 ~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 455 DGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 664 889999999999999998863
No 413
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=5.2 Score=48.61 Aligned_cols=121 Identities=12% Similarity=0.106 Sum_probs=76.9
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCE-------EEEEEcCCeEEEEECCCC---ceEEeccCC----CCeEEEEEeeCCCC
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNY-------ICYGLKLGNIRILNIITA---LRSLLRGHT----QRVTDMAFFAEDVH 271 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~-------LasGs~DG~IrIWd~~~~---~~~~l~~H~----~~V~slaf~s~dg~ 271 (1395)
++.+..++.|.+ |.-+.+.++++. -+.|-.|..|+-||.+-. .+....+|. ....|.+- ....
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG 442 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESG 442 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeee--cCCc
Confidence 456667776655 677777776542 345777889999998743 222333332 22334433 3445
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcC
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSN 344 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~ 344 (1395)
+||.||.+|.||+||- .+.. .-..+.+-+..|..|..+.+|.+|+++| ...++.++..
T Consensus 443 ~IvvgS~~GdIRLYdr-i~~~-------------AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDR-IGRR-------------AKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eEEEeecCCcEEeehh-hhhh-------------hhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 8999999999999997 3331 2233445567777888888998777665 4556666553
No 414
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=89.27 E-value=35 Score=36.70 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039790 973 MQDMLNQMMSTQKEIQKQMNS 993 (1395)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~ 993 (1395)
|.+.++.|...-.+++++|..
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~ 23 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEE 23 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.92 E-value=0.94 Score=37.32 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.4
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL 412 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l 412 (1395)
....|.+++|+|.. .+||.|+.||.|.+|.+ +++.+
T Consensus 10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCcCc
Confidence 34569999999998 79999999999999998 55543
No 416
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.79 E-value=8.6 Score=49.29 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=39.4
Q ss_pred cCCCEEEEEEcC------CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc-----EEEEECCCCC
Q 039790 226 VNRNYICYGLKL------GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR-----FFIWNITEGP 291 (1395)
Q Consensus 226 pdg~~LasGs~D------G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt-----V~IWdl~tg~ 291 (1395)
.++...++||.| .++..||..++.-..+..-...-.......-+|.+.|.||.||. |-.||..+.+
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc
Confidence 356778888888 35667777776422222111111111222347889999999975 7778887765
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.34 E-value=1.2 Score=36.66 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=27.9
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNII 246 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~ 246 (1395)
..|.++.|+|...+||.|..+|.|.||+++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 568999999999999999999999999984
No 418
>PRK09866 hypothetical protein; Provisional
Probab=88.10 E-value=92 Score=40.10 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=37.0
Q ss_pred HHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 039790 1143 RSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKHTTAIQQQFETAHSPMAIALRD 1197 (1395)
Q Consensus 1143 ~~~~~~~liP~fe~~~~~m~~qv~~~~~~~~~e~~~~~q~~~~~~~~~l~~~L~~ 1197 (1395)
+..+...+--.|.+..+++.+||+..+..||...+.+-+...+..+..|...|.+
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~~~~ff~~f~~~~~~~~~~l~~s~~~ 697 (741)
T PRK09866 643 QRALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFASCLTELQTRLRESLAL 697 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444677788888899999999999988887766666555555444433
No 419
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.19 E-value=6.1 Score=47.88 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=67.5
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC-CCccCccccccceEEEcccCCCeEEEEEecCC--CcEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE-PLKCPVDELINGVQLVGKHDGEITELSMCQWL--TTRL 392 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~h~~~V~slafspdg--~~~L 392 (1395)
.|..|..++.|..++..|.+|-++..-..+.|+...|...+ .+.|+.......+.+.. ..-.+..++|+|+. ...|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccCCceE
Confidence 46678889999988888888877776655555543333322 24565544443333322 23357788999986 4678
Q ss_pred EEEeCCCcEEEEeCCCCceeEEecC
Q 039790 393 ASASLDGTVKIWDDRKSTPLAVLRP 417 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg~~l~tl~~ 417 (1395)
+.-+.|.+|||||+.....+....|
T Consensus 184 ~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred EEEecCcEEEEEecCCcchhhccCC
Confidence 8888999999999988766644443
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.95 E-value=4.4 Score=53.28 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=46.1
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC---CCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
-...++|++|+|.| ..++.|-..|++.-|-. .+.....+.+ .....|.+|+|. ....+|++-+
T Consensus 197 ~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl----~t~eflvvy~ 262 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL----STQEFLVVYG 262 (1405)
T ss_pred cccceeeEEecccc-ceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe----cceeEEEEec
Confidence 45678999999999 89999999999998863 3333333322 222389999998 6777777755
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.92 E-value=25 Score=42.58 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=57.9
Q ss_pred CCEEEEEEecCCCEEEEEE-----------cCC-eEEEEECCC--Cc---eEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGL-----------KLG-NIRILNIIT--AL---RSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs-----------~DG-~IrIWd~~~--~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
.....++|.++|+++++-. ..+ .|.+++-.+ |+ ...|...-.....|+| ..++ ++++ +.+
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~-~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAV-AVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeE-ecCC-EEEe-CCC
Confidence 3456788999999777643 223 777776543 32 3445444456788999 6777 5554 444
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecC----CCCCccEEEEeCCCCeEEEEEe
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILAD----GDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~----~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
...++.|..... .. .+.....+..+.. +......++|.|++..+++.+.
T Consensus 91 ~i~~~~d~~gdg-~a-----d~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 91 DILFLRDKDGDD-KA-----DGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred eEEEEeCCCCCC-CC-----CCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 333343443211 00 0011111121222 1344567999999875555553
No 422
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.56 E-value=9.4 Score=47.30 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=71.4
Q ss_pred CccEEEEeCC----CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCc
Q 039790 316 VHPRVCWHPH----KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTT 390 (1395)
Q Consensus 316 ~v~~v~~sp~----~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~ 390 (1395)
.|..++|.|- ...++++-..+.+.+|-.-...... ..+.+ .....+. ...---..+.|+|.. .
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~-----~K~l~------sQtcEi~e~~pvLpQGCVWHPk~-~ 125 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTER-----NKLLM------SQTCEIREPFPVLPQGCVWHPKK-A 125 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCcccc-----cccee------eeeeeccCCcccCCCcccccCCC-c
Confidence 4667999885 4578999999998888764221110 00000 0001110 000112357899987 5
Q ss_pred EEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 391 RLASASLDGTVKIWDDRKS--TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.|+.-.....-.+++++.. +....++++ | .|.|.+|. .||+.|+++-+..=.-+|||-.
T Consensus 126 iL~VLT~~dvSV~~sV~~d~srVkaDi~~~-G-~IhCACWT----~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSSRVKADIKTS-G-LIHCACWT----KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eEEEEecCceeEeeeeeeCCceEEEeccCC-c-eEEEEEec----CcCCEEEEEeCCeEEEEEecCc
Confidence 6666665555566777654 333345544 4 79999999 8999887754233445788854
No 423
>PRK10115 protease 2; Provisional
Probab=86.34 E-value=1.3e+02 Score=39.84 Aligned_cols=69 Identities=9% Similarity=-0.061 Sum_probs=43.3
Q ss_pred EEEEEecCCCEEEEEEcC------CeEEEEECCCC--c-eEEeccCCCCeEEEEEeeCCCCEEEEEEC---CCcEEEEEC
Q 039790 220 LGRQIAVNRNYICYGLKL------GNIRILNIITA--L-RSLLRGHTQRVTDMAFFAEDVHLLASASV---DGRFFIWNI 287 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~D------G~IrIWd~~~~--~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl 287 (1395)
..+.|++|++.|++...+ ..|+.|++.++ . ...+........-..+.+.++.+++..+. ++.+.+|+.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458899999988887553 36778888887 2 33444434444423343557776665443 346888885
Q ss_pred C
Q 039790 288 T 288 (1395)
Q Consensus 288 ~ 288 (1395)
.
T Consensus 255 ~ 255 (686)
T PRK10115 255 E 255 (686)
T ss_pred c
Confidence 4
No 424
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.70 E-value=77 Score=36.80 Aligned_cols=234 Identities=12% Similarity=0.019 Sum_probs=119.6
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCC------C--ceEEecc-----CCCCeEEEEEeeCC-----------CCEE
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIIT------A--LRSLLRG-----HTQRVTDMAFFAED-----------VHLL 273 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~------~--~~~~l~~-----H~~~V~slaf~s~d-----------g~~L 273 (1395)
.-++++|+|.+.+-++....+...+||... . .+..+.. .....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 346899999998888877789999999871 1 1223321 23457777773211 1247
Q ss_pred EEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec-CC-CCCccEEEEeCC--CCeEEEEEeC-CeEEEEEcCCCCc
Q 039790 274 ASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-DG-DSVHPRVCWHPH--KQEILMLAIG-NRILKIDSNRVGK 348 (1395)
Q Consensus 274 aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-~~-~~~v~~v~~sp~--~~~lla~g~~-~~ii~~d~~~~~~ 348 (1395)
+.+++||+|.-|...-+... .+..+..+. .. ......+++... +.+|+++-.. ++|-++|.....-
T Consensus 104 if~tEdGTisaW~p~v~~t~---------~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTR---------MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred EEEeCCceEEeecCcCCccc---------ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 88899999999996544310 001111222 11 222234555433 4456655543 3444443322110
Q ss_pred c--ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec--CCCCCCee
Q 039790 349 G--ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR--PYDGHPVN 424 (1395)
Q Consensus 349 ~--~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~--~h~~~~V~ 424 (1395)
. ..|.-. .+...-.--.++.+.+. -.|+-..-.++. +.=+.|..-|.|-+||. .|..++.+. +.-. ..+
T Consensus 175 ~~~g~F~DP---~iPagyAPFnIqnig~~-lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LN-aPW 247 (336)
T TIGR03118 175 PLPGSFIDP---ALPAGYAPFNVQNLGGT-LYVTYAQQDADR-NDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLN-APW 247 (336)
T ss_pred cCCCCccCC---CCCCCCCCcceEEECCe-EEEEEEecCCcc-cccccCCCcceEEEEcC-CCcEEEEeccCCccc-CCc
Confidence 0 001000 00000000012222211 112222222222 23344455678999995 588888774 2222 567
Q ss_pred EEEEeecCC--CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 425 CVTFLIGPH--PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 425 sV~fs~~~~--pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
.|+..|... ..|.+|+ +-..||+|..||..++ +.+..+....+
T Consensus 248 G~a~APa~FG~~sg~lLV-GNFGDG~InaFD~~sG------------~~~g~L~~~~G 292 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLV-GNFGDGTINAYDPQSG------------AQLGQLLDPDN 292 (336)
T ss_pred eeeeChhhhCCCCCCeEE-eecCCceeEEecCCCC------------ceeeeecCCCC
Confidence 777753211 3455554 4668999999999988 66666655443
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=85.66 E-value=30 Score=41.85 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=80.0
Q ss_pred CCeEEEEEeeCCCCEEEEEE-----------CCC-cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC
Q 039790 258 QRVTDMAFFAEDVHLLASAS-----------VDG-RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH 325 (1395)
Q Consensus 258 ~~V~slaf~s~dg~~LaSgs-----------~Dg-tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~ 325 (1395)
.....|+| .++|+++++.. ..+ .|.+++-.++. +. .....++...-.....+++.++
T Consensus 14 ~~P~~ia~-d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd---------G~-~d~~~vfa~~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 14 RNPIAVCF-DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD---------GK-YDKSNVFAEELSMVTGLAVAVG 82 (367)
T ss_pred CCCceeeE-CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC---------CC-cceeEEeecCCCCccceeEecC
Confidence 34667888 78888777653 223 67777654432 10 1122233333344567888887
Q ss_pred CCeEEEEEeCCeEEEEEcCCC-CccccccCCCCCccCccccccceEEEcc----cCCCeEEEEEecCCCcEEEEEeC---
Q 039790 326 KQEILMLAIGNRILKIDSNRV-GKGERFSAEEPLKCPVDELINGVQLVGK----HDGEITELSMCQWLTTRLASASL--- 397 (1395)
Q Consensus 326 ~~~lla~g~~~~ii~~d~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~l~~----h~~~V~slafspdg~~~LaSgs~--- 397 (1395)
+ ++++ ....+.++..... +.. +.... .+ +..+.. +......++|.||| .+.++-+.
T Consensus 83 G--lyV~-~~~~i~~~~d~~gdg~a-----d~~~~----~l---~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~ 146 (367)
T TIGR02604 83 G--VYVA-TPPDILFLRDKDGDDKA-----DGERE----VL---LSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLA 146 (367)
T ss_pred C--EEEe-CCCeEEEEeCCCCCCCC-----CCccE----EE---EEccCCCCCcccccccCceECCCC-CEEEecccCCC
Confidence 7 5554 4556766644321 110 00000 00 111111 23457889999998 54444331
Q ss_pred ----------------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 398 ----------------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 398 ----------------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.|.|.-+|...+.....-.++. ....++|+ ++|+++++-.
T Consensus 147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r--np~Gl~~d----~~G~l~~tdn 202 (367)
T TIGR02604 147 SKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ--NPYGHSVD----SWGDVFFCDN 202 (367)
T ss_pred ceeccCCCccCcccccCceEEEEecCCCeEEEEecCcC--CCccceEC----CCCCEEEEcc
Confidence 1445555555444322233443 46889998 8998877633
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.63 E-value=81 Score=37.00 Aligned_cols=113 Identities=11% Similarity=0.088 Sum_probs=57.9
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
...-.+.+..+..++|| .++++++......-||--. ..+.... -. ..|.++.|. +++...++ . ..|.|
T Consensus 140 ~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~--~~-~riq~~gf~----~~~~lw~~-~-~Gg~~ 209 (302)
T PF14870_consen 140 VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRN--SS-RRIQSMGFS----PDGNLWML-A-RGGQI 209 (302)
T ss_dssp E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE----SS-S-EEEEEE-----TTS-EEEE-E-TTTEE
T ss_pred ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccC--cc-ceehhceec----CCCCEEEE-e-CCcEE
Confidence 34455788999999998 7888887777777888543 2322222 22 389999999 88877665 4 78889
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
++=+... -..++..+...+. ...+-.-.+++.+++.+.++|+..+
T Consensus 210 ~~s~~~~--------------~~~~w~~~~~~~~--~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 210 QFSDDPD--------------DGETWSEPIIPIK--TNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EEEE-TT--------------EEEEE---B-TTS--S--S-EEEEEESSSS-EEEEESTT-
T ss_pred EEccCCC--------------CccccccccCCcc--cCceeeEEEEecCCCCEEEEeCCcc
Confidence 8877221 1222332222211 1122223578888888888777553
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=85.26 E-value=91 Score=37.21 Aligned_cols=111 Identities=12% Similarity=0.175 Sum_probs=59.4
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEE-EEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVK-IWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~Ir-IWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
.+.++++.+.+++ .+++++ ..|.+. .+|- .++.-..+.......++++.+. ++++.+++ | ..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~----~~g~~~~v-g-~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQ----PDGNLWML-A-RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCC-eEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEc----CCCCEEEE-e-cCCEEEEccC
Confidence 4578899999986 566555 455443 2332 2222222333333479999998 88887666 5 5777653234
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
..+ .+|+.+.. +.. ...+....+.+.+++.+++++ .+|.|+
T Consensus 243 d~G---------~sW~~~~~---~~~-----~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 243 DDL---------ESWSKPII---PEI-----TNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred CCC---------CccccccC---Ccc-----ccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 444 34443211 100 001111246777777766554 466554
No 428
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.06 E-value=1.5e+02 Score=39.64 Aligned_cols=187 Identities=13% Similarity=0.085 Sum_probs=96.3
Q ss_pred cCCCCeEEEEEe---e---CCCCEEEEEECCCcEEEEECCCCCC----CCCCcccccceEEEEEEecCCCCCccEEEEeC
Q 039790 255 GHTQRVTDMAFF---A---EDVHLLASASVDGRFFIWNITEGPD----EEDKPQILGKIVVAIQILADGDSVHPRVCWHP 324 (1395)
Q Consensus 255 ~H~~~V~slaf~---s---~dg~~LaSgs~DgtV~IWdl~tg~~----~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp 324 (1395)
.-..+|..|+|. . ....+|+. -....+.|+...-.+. ......+....+..+.....++..+..|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999993 1 12235444 4445777877333221 01112233445555655556677788999999
Q ss_pred CCCeEEEE-EeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 039790 325 HKQEILML-AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASLDGTVK 402 (1395)
Q Consensus 325 ~~~~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~Dg~Ir 402 (1395)
....-|++ -..|.--+|+.....+.. ...+ .......+...+. ...+.-..+.|..+. +.|+.++ ...+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~----~~~~--~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lLv~~-r~~l~ 227 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK----SSNL--RLSRNISGSIIFDPEELSNWKRILWVSDS-NRLLVCN-RSKLM 227 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC----Ccce--eeccCCCccccCCCcccCcceeeEecCCC-CEEEEEc-CCceE
Confidence 77655544 445555555551111100 0000 0000000100000 011334578888776 5666654 35688
Q ss_pred EEeCCCCceeE-EecCCCCCCeeEEEEeecCCCC--CcEEEEEecCCCeEEEEECCCC
Q 039790 403 IWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQ--HIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 403 IWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pd--g~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
++|+.+..... ........+|..+.-+ ++ +..++- ....|...|+...
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~----~~~~~~~FiL---Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSWILDVKRS----PDNPSHVFIL---TSKEIIWLDVKSS 278 (765)
T ss_pred EEECCCCCccchhccCCChhheeeEEec----CCccceEEEE---ecCeEEEEEccCC
Confidence 99998875533 2222222378888887 44 222322 2367888888763
No 429
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.67 E-value=45 Score=41.88 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=77.3
Q ss_pred CEEEEE---EcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 229 NYICYG---LKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 229 ~~LasG---s~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
-+++.+ ...+.+.++|.+...+..+.........+.+ -++|++++..+ +.++.+|+. |+ .+.
T Consensus 116 l~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~-l~nG~ll~~~~--~~~~e~D~~-G~-----------v~~ 180 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQ-LPNGNLLIGSG--NRLYEIDLL-GK-----------VIW 180 (477)
T ss_dssp EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE--TTS-EEEEEB--TEEEEE-TT--------------EEE
T ss_pred EEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeE-cCCCCEEEecC--CceEEEcCC-CC-----------EEE
Confidence 345554 2445666666665544433322222211555 67888776555 678888876 43 222
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEe-------------CCeEEEEEcCCCCccccccCCCCCccCcc-----cccc
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAI-------------GNRILKIDSNRVGKGERFSAEEPLKCPVD-----ELIN 367 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~-------------~~~ii~~d~~~~~~~~~~s~~~~~~~~~~-----~~~~ 367 (1395)
...+-......+..+.+-++|..++.+.. .+.|+.++ ....-...|.....+..... ....
T Consensus 181 ~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~ 259 (477)
T PF05935_consen 181 EYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYG 259 (477)
T ss_dssp EEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SS
T ss_pred eeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccccccccc
Confidence 22222211123446778888877766662 45566665 22111111111111100000 0000
Q ss_pred ceEEEcccC--CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC
Q 039790 368 GVQLVGKHD--GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG 420 (1395)
Q Consensus 368 ~~~~l~~h~--~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~ 420 (1395)
......... -.++++.+.+.+..+|+|+-.-..|...|.++++....+-.|.+
T Consensus 260 ~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 260 DISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp SSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred ccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 000001111 24789999995447777777677899999999998888877654
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.26 E-value=67 Score=38.87 Aligned_cols=111 Identities=11% Similarity=0.202 Sum_probs=73.7
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---c--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---L--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRF 282 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV 282 (1395)
++.......+.|.++.||+|.+.||+--.+.+|.+++.... . .+..+..+..|...+| ..+ .-++-....| +
T Consensus 58 piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W-~~s-~e~A~i~~~G-~ 134 (657)
T KOG2377|consen 58 PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW-TSS-TEIAFITDQG-I 134 (657)
T ss_pred CceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE-ecC-eeEEEEecCC-e
Confidence 33444456689999999999999999999999999998443 1 1222333456888999 443 4455544443 6
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
-+|.+...+ ..++....+...|.-..|+++...++.+..
T Consensus 135 e~y~v~pek-------------rslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 135 EFYQVLPEK-------------RSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEEEEchhh-------------hhhhhhhhcccCccEEEEccccceEeeecc
Confidence 667665433 245556666777778888888775544433
No 431
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=82.19 E-value=1.1e+02 Score=35.90 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=75.4
Q ss_pred EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEE
Q 039790 252 LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILM 331 (1395)
Q Consensus 252 ~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla 331 (1395)
....-.+.+.++.. .++|.+++.+..-..+.-||--... + ..........+..+.|.+++. +..
T Consensus 139 ~~~~~~gs~~~~~r-~~dG~~vavs~~G~~~~s~~~G~~~-----------w---~~~~r~~~~riq~~gf~~~~~-lw~ 202 (302)
T PF14870_consen 139 VVSETSGSINDITR-SSDGRYVAVSSRGNFYSSWDPGQTT-----------W---QPHNRNSSRRIQSMGFSPDGN-LWM 202 (302)
T ss_dssp EE-S----EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS---------------EEEE--SSS-EEEEEE-TTS--EEE
T ss_pred cccCCcceeEeEEE-CCCCcEEEEECcccEEEEecCCCcc-----------c---eEEccCccceehhceecCCCC-EEE
Confidence 34455678889888 8999988777654444567755322 1 111122346677899999865 555
Q ss_pred EEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 039790 332 LAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP 411 (1395)
Q Consensus 332 ~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~ 411 (1395)
++.++.+..-+.... ...|.. ...-+......+.+++|.+++ ...|+|+ .|++ +.....|+-
T Consensus 203 ~~~Gg~~~~s~~~~~--~~~w~~-------------~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGkt 264 (302)
T PF14870_consen 203 LARGGQIQFSDDPDD--GETWSE-------------PIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKT 264 (302)
T ss_dssp EETTTEEEEEE-TTE--EEEE----------------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS
T ss_pred EeCCcEEEEccCCCC--cccccc-------------ccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCcc
Confidence 667777766652111 111110 011111123348999999886 5666554 4443 334445554
Q ss_pred eEEecC---CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 412 LAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 412 l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
-...+. -.. -++.|.|. .+.+-++. | .||.|--|
T Consensus 265 W~~~~~~~~~~~-n~~~i~f~----~~~~gf~l-G-~~G~ll~~ 301 (302)
T PF14870_consen 265 WQKDRVGENVPS-NLYRIVFV----NPDKGFVL-G-QDGVLLRY 301 (302)
T ss_dssp -EE-GGGTTSSS----EEEEE----ETTEEEEE---STTEEEEE
T ss_pred ceECccccCCCC-ceEEEEEc----CCCceEEE-C-CCcEEEEe
Confidence 444432 122 58999997 44445554 6 89988655
No 432
>PHA02790 Kelch-like protein; Provisional
Probab=81.36 E-value=49 Score=41.61 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=14.3
Q ss_pred cCCCEEEEEEcCC-----eEEEEECCCCc
Q 039790 226 VNRNYICYGLKLG-----NIRILNIITAL 249 (1395)
Q Consensus 226 pdg~~LasGs~DG-----~IrIWd~~~~~ 249 (1395)
.++.+++.|+.++ .+..||..++.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~ 298 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNN 298 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCE
Confidence 4456667776543 45667776653
No 433
>PLN02153 epithiospecifier protein
Probab=81.22 E-value=1e+02 Score=36.65 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=14.6
Q ss_pred CCCEEEEEEcC-------CeEEEEECCCCc
Q 039790 227 NRNYICYGLKL-------GNIRILNIITAL 249 (1395)
Q Consensus 227 dg~~LasGs~D-------G~IrIWd~~~~~ 249 (1395)
++++++.|+.+ ..+.+||..+..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 61 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHT 61 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCE
Confidence 45666666653 257788887754
No 434
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.98 E-value=8.4 Score=42.98 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=50.5
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceE--------Eec-------cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 224 IAVNRNYICYGLKLGNIRILNIITALRS--------LLR-------GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~IrIWd~~~~~~~--------~l~-------~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+..+++||++-+.+|.+++||+.+++.. .+. .....|..+.+ ..+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~l-t~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSL-TSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEE-cCCCCEEEEEe-CCCEEEeccc
Confidence 5668899999999999999999986321 122 35567888888 78888777765 5789999987
Q ss_pred CCC
Q 039790 289 EGP 291 (1395)
Q Consensus 289 tg~ 291 (1395)
-+.
T Consensus 96 L~~ 98 (219)
T PF07569_consen 96 LGC 98 (219)
T ss_pred cce
Confidence 653
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=80.45 E-value=5.3 Score=32.19 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=27.4
Q ss_pred CCeEEEEEecCCC--cEEEEEeCCCcEEEEeCCCC
Q 039790 377 GEITELSMCQWLT--TRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 377 ~~V~slafspdg~--~~LaSgs~Dg~IrIWDl~sg 409 (1395)
+.|.++.|+|... .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998664 58888888899999999963
No 436
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=79.31 E-value=1.6e+02 Score=39.14 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=23.2
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEec
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~ 416 (1395)
.++.++++|.+.++|-++|+++...+
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEeece
Confidence 78999999999999999999887654
No 437
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=79.22 E-value=1.6e+02 Score=35.79 Aligned_cols=15 Identities=0% Similarity=0.107 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhh
Q 039790 979 QMMSTQKEIQKQMNS 993 (1395)
Q Consensus 979 ~~~~~~~~~~~~~~~ 993 (1395)
++.+|--++.+--..
T Consensus 231 E~vamalD~fq~gRa 245 (473)
T PRK15362 231 EIVAMALDVFQIGRA 245 (473)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666554433
No 438
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=78.89 E-value=1.3e+02 Score=34.54 Aligned_cols=193 Identities=10% Similarity=0.050 Sum_probs=99.4
Q ss_pred CeEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC
Q 039790 259 RVTDMAFFAEDVHLLASASVDG--RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN 336 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~ 336 (1395)
-...+.| ..++.++-+.|.-| .|+.+|+.+|+. .....+-. ...--.++.. ++.++......
T Consensus 46 FTQGL~~-~~~g~LyESTG~yG~S~l~~~d~~tg~~-----------~~~~~l~~--~~FgEGit~~--~d~l~qLTWk~ 109 (264)
T PF05096_consen 46 FTQGLEF-LDDGTLYESTGLYGQSSLRKVDLETGKV-----------LQSVPLPP--RYFGEGITIL--GDKLYQLTWKE 109 (264)
T ss_dssp EEEEEEE-EETTEEEEEECSTTEEEEEEEETTTSSE-----------EEEEE-TT--T--EEEEEEE--TTEEEEEESSS
T ss_pred cCccEEe-cCCCEEEEeCCCCCcEEEEEEECCCCcE-----------EEEEECCc--cccceeEEEE--CCEEEEEEecC
Confidence 3557888 56888889998887 699999999871 11111111 1111122222 23455555443
Q ss_pred eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec
Q 039790 337 RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 337 ~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~ 416 (1395)
++...++.... +.+..+. ..+.-+.++ .|| ..|+......+|.++|..+.+.++++.
T Consensus 110 ~~~f~yd~~tl-------------------~~~~~~~-y~~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 110 GTGFVYDPNTL-------------------KKIGTFP-YPGEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp SEEEEEETTTT-------------------EEEEEEE--SSS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred CeEEEEccccc-------------------eEEEEEe-cCCcceEEE--cCC-CEEEEECCccceEEECCcccceEEEEE
Confidence 33333332211 1123332 234556666 455 456666667789999998887777665
Q ss_pred CCCC----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc------ccc
Q 039790 417 PYDG----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL------RLE 486 (1395)
Q Consensus 417 ~h~~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~------~~~ 486 (1395)
-..+ ..++-+.|- +|...+=.= ....|..-|..+| +++..++...-... ...
T Consensus 167 V~~~g~pv~~LNELE~i-----~G~IyANVW-~td~I~~Idp~tG------------~V~~~iDls~L~~~~~~~~~~~~ 228 (264)
T PF05096_consen 167 VTDNGRPVSNLNELEYI-----NGKIYANVW-QTDRIVRIDPETG------------KVVGWIDLSGLRPEVGRDKSRQP 228 (264)
T ss_dssp -EETTEE---EEEEEEE-----TTEEEEEET-TSSEEEEEETTT-------------BEEEEEE-HHHHHHHTSTTST--
T ss_pred EEECCEECCCcEeEEEE-----cCEEEEEeC-CCCeEEEEeCCCC------------eEEEEEEhhHhhhcccccccccc
Confidence 3321 156778885 665555443 5566777788888 88887764321100 001
Q ss_pred ccccceEEEEeCCC-CEEEEEeC
Q 039790 487 DAFFNQVVALNRAG-LFLLANAK 508 (1395)
Q Consensus 487 ~~~~~~~l~~S~dg-~~LaSgs~ 508 (1395)
...+-..+++.+.+ .++++|-.
T Consensus 229 ~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 229 DDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTS-EEEEEEETTTTEEEEEETT
T ss_pred cCCeeEeEeEeCCCCEEEEEeCC
Confidence 12333467776554 56666643
No 439
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=78.13 E-value=75 Score=35.75 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 039790 1153 AFEMSCKAM 1161 (1395)
Q Consensus 1153 ~fe~~~~~m 1161 (1395)
.|..+..+|
T Consensus 152 i~~~l~~~m 160 (229)
T PF11101_consen 152 ILQALGNEM 160 (229)
T ss_pred HHHHHHHHH
Confidence 333444444
No 440
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=77.79 E-value=1.3e+02 Score=34.20 Aligned_cols=151 Identities=20% Similarity=0.197 Sum_probs=81.6
Q ss_pred CeEEEEEeeCCCCEEEEEE---CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC
Q 039790 259 RVTDMAFFAEDVHLLASAS---VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG 335 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs---~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~ 335 (1395)
.+.+.++ ++++..++... ....++++...... .... .......-.|++++ .+.++..+
T Consensus 25 ~~~s~Av-S~dg~~~A~v~~~~~~~~L~~~~~~~~~---------------~~~~--~g~~l~~PS~d~~g-~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAV-SPDGSRVAAVSEGDGGRSLYVGPAGGPV---------------RPVL--TGGSLTRPSWDPDG-WVWTVDDG 85 (253)
T ss_pred cccceEE-CCCCCeEEEEEEcCCCCEEEEEcCCCcc---------------eeec--cCCccccccccCCC-CEEEEEcC
Confidence 6888999 88998777665 33345555544322 0111 12255667889985 55555555
Q ss_pred CeEEEEEc-CCCCccccccCCCCCccCccccccceEEE-cccCCCeEEEEEecCCCcEEEEEe---CCCcEEEEeCC---
Q 039790 336 NRILKIDS-NRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGEITELSMCQWLTTRLASAS---LDGTVKIWDDR--- 407 (1395)
Q Consensus 336 ~~ii~~d~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~V~slafspdg~~~LaSgs---~Dg~IrIWDl~--- 407 (1395)
....++.. ...+.... ...- ..-.+.|..|.+|||| .++|... .++.|.|=-+.
T Consensus 86 ~~~~~~~~~~~~g~~~~-----------------~~v~~~~~~~~I~~l~vSpDG-~RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEP-----------------VEVDWPGLRGRITALRVSPDG-TRVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred CCceEEEEecCCCccee-----------------EEecccccCCceEEEEECCCC-cEEEEEEecCCCCeEEEEEEEeCC
Confidence 44444432 11111100 0110 1111289999999999 5555444 34666665432
Q ss_pred CC------ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 408 KS------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 408 sg------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
.+ .++........ .+..+.|. +++.+++.+...++.+..
T Consensus 148 ~g~~~~l~~~~~~~~~~~~-~v~~v~W~----~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 148 DGVPRRLTGPRRVAPPLLS-DVTDVAWS----DDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCcceeccceEecccccC-cceeeeec----CCCEEEEEeCCCCCceeE
Confidence 23 12222223233 79999998 788777766545554443
No 441
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.52 E-value=26 Score=47.43 Aligned_cols=187 Identities=12% Similarity=0.183 Sum_probs=96.1
Q ss_pred EEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEE
Q 039790 241 RILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRV 320 (1395)
Q Consensus 241 rIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v 320 (1395)
.+|.+....+..+. |...-+.|-++++=+..=+ +.|..+++|++.++.....+...... |..+.++....+
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~sht-Il~V~LvkPkpg----- 133 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHT-ILKVGLVKPKPG----- 133 (1311)
T ss_pred ccccCCHHHHHHhc-CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhh-heeeeeecCCCC-----
Confidence 34666554333333 4444455555555554333 45789999999996643333222222 222222221111
Q ss_pred EEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCc
Q 039790 321 CWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGT 400 (1395)
Q Consensus 321 ~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~ 400 (1395)
.|-+.-+++++.+.--.++++-......... ...... ...+....-.|+|+....+| +.|.+| .||
T Consensus 134 vFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~----------~~~f~~-~~~i~~dg~~V~~I~~t~nG-RIF~~G-~dg- 199 (1311)
T KOG1900|consen 134 VFVPEIQHLLVVATPVEIVILGVSFDEFTGE----------LSIFNT-SFKISVDGVSVNCITYTENG-RIFFAG-RDG- 199 (1311)
T ss_pred cchhhhheeEEecccceEEEEEEEeccccCc----------cccccc-ceeeecCCceEEEEEeccCC-cEEEee-cCC-
Confidence 2334445677777777776664432211100 000011 12222235578999977776 666655 555
Q ss_pred EEEEeCC----CC---c-e----------------eEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 401 VKIWDDR----KS---T-P----------------LAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 401 IrIWDl~----sg---~-~----------------l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.||.+. .| + | +-.+. .+.. +|..+... -....|.+-+ ..|+|++||+.
T Consensus 200 -~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d-pI~qi~ID----~SR~IlY~ls-ek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 200 -NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD-PIRQITID----NSRNILYVLS-EKGTVSAYDIG 272 (1311)
T ss_pred -CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC-cceeeEec----cccceeeeec-cCceEEEEEcc
Confidence 455431 11 1 1 11222 3444 89999996 3344455544 89999999997
Q ss_pred CC
Q 039790 456 EE 457 (1395)
Q Consensus 456 tg 457 (1395)
..
T Consensus 273 ~~ 274 (1311)
T KOG1900|consen 273 GN 274 (1311)
T ss_pred CC
Confidence 73
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.79 E-value=2.1e+02 Score=37.78 Aligned_cols=74 Identities=8% Similarity=0.114 Sum_probs=49.5
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECC----------CC-----ceE------Ee-ccCCCCeEEEEEeeC--CCCE
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNII----------TA-----LRS------LL-RGHTQRVTDMAFFAE--DVHL 272 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~----------~~-----~~~------~l-~~H~~~V~slaf~s~--dg~~ 272 (1395)
-.|..+.++++|++||..|..|.+.+ .+. .| |.. .+ ..+...|..+.||+. ++..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 36788899999999999888664433 331 11 111 11 234567888999532 3678
Q ss_pred EEEEECCCcEEEEECCCCC
Q 039790 273 LASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 273 LaSgs~DgtV~IWdl~tg~ 291 (1395)
|+.-..|+++|+||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888889999999987543
No 443
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=75.49 E-value=31 Score=43.52 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=48.7
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
..++++.-+|.|.-++.|..||.|++|+........+.....+-..+.| .. +-|+++..|+.+.-|.-.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~-tn--hgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVF-TN--HGLVTATSDRRALAWKED 83 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceee-ec--cceEEEeccchhheeecc
Confidence 4567777889999999999999999999876432222222334455667 33 347788888888888744
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.63 E-value=38 Score=45.97 Aligned_cols=164 Identities=10% Similarity=0.077 Sum_probs=91.4
Q ss_pred EcCCeEEEEECCC-CceEEeccCCCCeEEEEEeeCCC-------CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 235 LKLGNIRILNIIT-ALRSLLRGHTQRVTDMAFFAEDV-------HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 235 s~DG~IrIWd~~~-~~~~~l~~H~~~V~slaf~s~dg-------~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+-|..+.+|+.++ +....+.+-...|..|...-|.. ++++.-+.--.|.|+-+.-.+.-... ......
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~----~~f~~~ 171 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL----SIFNTS 171 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc----cccccc
Confidence 4578899999998 46777777777787776633322 23333333345777665443311111 011111
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCC-CccCc----cccccc-eEEEcccCCCeE
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEP-LKCPV----DELING-VQLVGKHDGEIT 380 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~-~~~~~----~~~~~~-~~~l~~h~~~V~ 380 (1395)
+ .+...+..+.++. +-+++.+|.+|.+|+++-+-..... .|....- ..|.. ..+... ......+.++|.
T Consensus 172 ~-~i~~dg~~V~~I~-~t~nGRIF~~G~dg~lyEl~Yq~~~---gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~ 246 (1311)
T KOG1900|consen 172 F-KISVDGVSVNCIT-YTENGRIFFAGRDGNLYELVYQAED---GWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIR 246 (1311)
T ss_pred e-eeecCCceEEEEE-eccCCcEEEeecCCCEEEEEEeccC---chhhcccccccCchhHHHHhhhhhhcCCCCCCCcce
Confidence 1 1222345566777 4555578888888877665332211 1111100 00100 000001 222346788999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
.++....- ..+.+-+..|+|++||+..
T Consensus 247 qi~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 247 QITIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeEecccc-ceeeeeccCceEEEEEccC
Confidence 99998765 7899999999999999875
No 445
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=74.41 E-value=2e+02 Score=34.44 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=14.7
Q ss_pred HHHHHHHhcc--CChH-HHHHHHhcCCCCCc
Q 039790 1272 EEAFTGALHR--SDVS-IVSWLCSQVDLPGI 1299 (1395)
Q Consensus 1272 eeAf~~aL~s--~d~~-l~~~l~~~~~p~~l 1299 (1395)
++...+++.. .++. +|...+.++|...+
T Consensus 300 ~~~l~~~v~~~~~~i~~~V~~~l~~~~~~~l 330 (367)
T PF04286_consen 300 ENLLERIVESNHIDIGEIVEEKLNSLDDEEL 330 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4444555555 4444 66666666655543
No 446
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=74.41 E-value=37 Score=41.26 Aligned_cols=8 Identities=0% Similarity=-0.026 Sum_probs=3.1
Q ss_pred CCCEEEEe
Q 039790 167 APPVRLRS 174 (1395)
Q Consensus 167 Dg~Vrlwd 174 (1395)
.+.++..+
T Consensus 478 G~ql~~ve 485 (569)
T KOG3671|consen 478 GGQLKKVE 485 (569)
T ss_pred ccccccee
Confidence 33334333
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=74.38 E-value=1.1e+02 Score=31.38 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=70.5
Q ss_pred EEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC----CCcEEEEEe
Q 039790 321 CWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW----LTTRLASAS 396 (1395)
Q Consensus 321 ~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd----g~~~LaSgs 396 (1395)
.|......+.+++..+++++.+......... .....+..+. -...|++|+-.+- +...|+.|+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~------------~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt 71 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTG------------RQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT 71 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccc------------cccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec
Confidence 4555556677788888888887654322100 0111133333 5667888876542 234677766
Q ss_pred CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 397 LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
. ..|..||+....-+..-.-++ .|.++.|-.-..-+..++++ | .+..|.-||....
T Consensus 72 ~-t~llaYDV~~N~d~Fyke~~D--Gvn~i~~g~~~~~~~~l~iv-G-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 72 Q-TSLLAYDVENNSDLFYKEVPD--GVNAIVIGKLGDIPSPLVIV-G-GNCSIQGFDYEGN 127 (136)
T ss_pred c-ceEEEEEcccCchhhhhhCcc--ceeEEEEEecCCCCCcEEEE-C-ceEEEEEeCCCCc
Confidence 4 569999998877665555555 48888884111123455555 4 4777877776543
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=73.81 E-value=1.1e+02 Score=33.78 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=34.6
Q ss_pred CEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEEC
Q 039790 229 NYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASV 278 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~ 278 (1395)
+.|..+...+.|.+|++... .+..|. .-+.|..|.+ +..|++|+|-=.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y-~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVY-SEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEe-ccccceEEEEEe
Confidence 45555456678999999843 233444 3478999999 888999998644
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=73.75 E-value=53 Score=40.12 Aligned_cols=61 Identities=13% Similarity=0.296 Sum_probs=47.8
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 227 NRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
...|||.|+..|.||+||.-.. ....+.+-...|..|.. ..+|.+|++.|.. ++.+-|+.-
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idv-ta~Gk~ilaTCk~-yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDV-TANGKHILATCKN-YLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEe-ecCCcEEEEeecc-eEEEEeccc
Confidence 3458999999999999996554 35567778889999999 8889887777664 677777653
No 450
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.59 E-value=16 Score=40.86 Aligned_cols=64 Identities=9% Similarity=0.121 Sum_probs=47.9
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEe-------c-------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVL-------R-------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-------~-------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
..+ .+|++.+.+|.+++||+.+++++..- . .... .|..+.++ .+|.-|++- .||..+.
T Consensus 20 ~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~-~i~~~~lt----~~G~PiV~l--sng~~y~ 91 (219)
T PF07569_consen 20 CNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSP-NITSCSLT----SNGVPIVTL--SNGDSYS 91 (219)
T ss_pred eCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCC-cEEEEEEc----CCCCEEEEE--eCCCEEE
Confidence 345 78999999999999999998765432 1 1223 78889998 788877774 4788999
Q ss_pred EECCCC
Q 039790 452 WASAEE 457 (1395)
Q Consensus 452 WDl~tg 457 (1395)
||..-+
T Consensus 92 y~~~L~ 97 (219)
T PF07569_consen 92 YSPDLG 97 (219)
T ss_pred eccccc
Confidence 997653
No 451
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.61 E-value=3.1e+02 Score=35.96 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039790 1028 RFQEENAKHEKLERDRMQQITNLITNT 1054 (1395)
Q Consensus 1028 r~~~~~~~~~~~~~~rq~~ll~~vs~~ 1054 (1395)
+++.+....+++..++.+++.++.++.
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444444445555555555565555554
No 452
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=72.19 E-value=2.6e+02 Score=34.82 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=35.6
Q ss_pred hhhhhHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 998 PVNKEGKRLEASLGRS------IEKVVKANSDALWARFQEENAKHEKLERDRMQQITNLIT 1052 (1395)
Q Consensus 998 ~~~ke~~~lE~~l~~~------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~rq~~ll~~vs 1052 (1395)
.+.|-+--||.++... .++.+..+++.-|.+|++-...|-.+.+..++..+.-+.
T Consensus 197 ~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~ 257 (531)
T PF15450_consen 197 FLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQ 257 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhh
Confidence 3445555677777666 777787788888888777666666555555555444443
No 453
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=72.00 E-value=2.1e+02 Score=34.33 Aligned_cols=122 Identities=10% Similarity=0.121 Sum_probs=75.0
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCC-CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYD-GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
.++-+.....+.+|...+++..+++.-.. +.-+..|.|.-+++++..++.++- .++.++++-... ++|
T Consensus 221 ~v~d~lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al-~s~i~~~~k~~~----------~tw 289 (476)
T KOG0918|consen 221 DVEDGLYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCAL-SSNIFRFFKNSD----------DTW 289 (476)
T ss_pred HhhccceeeeeEEEecCCccceeEEecCCCCcceEEeeeccCCCcccceeeeec-cCCceeeeeccc----------ccc
Confidence 34444555679999999999999887443 446788999855555555555443 567777776544 233
Q ss_pred cEEEEEeccCccc---ccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCCCCCC
Q 039790 470 KCTQTLELKSSAE---LRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 470 ~~l~tl~~h~~~i---~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~g~~~ 523 (1395)
.....+......+ ...++.....-+-+|-|.++|..+. ..|.|+-||+......
T Consensus 290 s~~~visvp~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~ 347 (476)
T KOG0918|consen 290 SAEVVISVPPLKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNP 347 (476)
T ss_pred ceeEEEecCccccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCc
Confidence 3333222211111 1124444555677787888775544 6888999999875543
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=70.57 E-value=10 Score=30.62 Aligned_cols=33 Identities=30% Similarity=0.253 Sum_probs=26.9
Q ss_pred CCeEEEEEeeCCC--CEEEEEECCCcEEEEECCCC
Q 039790 258 QRVTDMAFFAEDV--HLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 258 ~~V~slaf~s~dg--~~LaSgs~DgtV~IWdl~tg 290 (1395)
+.|.+|+|++..+ ++|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999943455 68998888899999999964
No 455
>PHA03098 kelch-like protein; Provisional
Probab=70.48 E-value=45 Score=42.47 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=16.5
Q ss_pred cCCCEEEEEEcC-----CeEEEEECCCCc
Q 039790 226 VNRNYICYGLKL-----GNIRILNIITAL 249 (1395)
Q Consensus 226 pdg~~LasGs~D-----G~IrIWd~~~~~ 249 (1395)
.++++++.||.+ ..+.+||..++.
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 467778888765 346678877654
No 456
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=70.25 E-value=92 Score=40.56 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=49.2
Q ss_pred cCCCeEEEEEe--cCCCcEEEEEeCCCcEEEEeCCCC--ceeE--EecCCCCCCeeEEEEeecCC-CCCcEEEEEecCCC
Q 039790 375 HDGEITELSMC--QWLTTRLASASLDGTVKIWDDRKS--TPLA--VLRPYDGHPVNCVTFLIGPH-PQHIVLITGGPLNR 447 (1395)
Q Consensus 375 h~~~V~slafs--pdg~~~LaSgs~Dg~IrIWDl~sg--~~l~--tl~~h~~~~V~sV~fs~~~~-pdg~~L~s~Gs~Dg 447 (1395)
-...++.++++ ... ++||.++....|.||-.... +... ... |. +-|-+|+|.+... ++|...+++++-.|
T Consensus 162 v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~-~~-hNIP~VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 162 VGASAWGLDIHDYKKS-RLIAVSSNSQEVTVFAFALVDERFYHVPSHQ-HS-HNIPNVSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred cCCceeEEEEEecCcc-eEEEEecCCceEEEEEEeccccccccccccc-cc-cCCCeeEeecCCCCCccceEEEEEeccC
Confidence 44589999998 655 78888888888888765432 1111 111 22 2699999984321 23433444455999
Q ss_pred eEEEEEC
Q 039790 448 ELKIWAS 454 (1395)
Q Consensus 448 ~I~IWDl 454 (1395)
.+.+|++
T Consensus 239 ~v~~~~I 245 (717)
T PF08728_consen 239 EVWTFKI 245 (717)
T ss_pred cEEEEEE
Confidence 9999888
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=69.95 E-value=0.6 Score=55.81 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=92.4
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCE-EEEEECCCcEEEEECCCCCCCCCCccc
Q 039790 221 GRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHL-LASASVDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~-LaSgs~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
...|-+.+.-++.++.+..+..||-.......+. -++...+|+| ..++.. ++-+-..+.+++||+.+...
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n-~tg~aldm~w-DkegdvlavlAek~~piylwd~n~eyt------- 109 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILELN-PTGKALDMAW-DKEGDVLAVLAEKTGPIYLWDVNSEYT------- 109 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecccC-CchhHhhhhh-ccccchhhhhhhcCCCeeechhhhhhH-------
Confidence 3457887777999998889999997655433322 3456667888 445554 45566678999999987541
Q ss_pred ccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe
Q 039790 300 LGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI 379 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V 379 (1395)
-++..+....-.-+.|++....++..-..+.++++....... ....+.|...+
T Consensus 110 -------qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~--------------------iiv~Gkh~RRg 162 (615)
T KOG2247|consen 110 -------QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRR--------------------IIVMGKHQRRG 162 (615)
T ss_pred -------HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhh--------------------hhhhcccccce
Confidence 011111122222367777776666665566666665433221 23344488999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEE
Q 039790 380 TELSMCQWLTTRLASASLDGTVKIW 404 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~Dg~IrIW 404 (1395)
++++|.+.+ +.+.++.|..+.+-
T Consensus 163 tq~av~lEd--~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 163 TQIAVTLED--YVILCDCDNTLSVT 185 (615)
T ss_pred eEEEecccc--eeeecCcHHHHHHh
Confidence 999999975 78888877765443
No 458
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=69.09 E-value=2.9e+02 Score=36.93 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=46.6
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe----cCCC--------C------CCeeEEEEeecCCCCC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL----RPYD--------G------HPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl----~~h~--------~------~~V~sV~fs~~~~pdg 436 (1395)
..+.|.++.....+ .+|+..-.||+|.++|-.+.+.+... .... | ..+..++|| |.+
T Consensus 258 ~~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafS----Pt~ 332 (753)
T PF11635_consen 258 LNKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFS----PTM 332 (753)
T ss_pred cCCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEEC----ccc
Confidence 34678888887777 79999999999999998777555444 1000 0 023346777 777
Q ss_pred cEEEEEecCCCeEE
Q 039790 437 IVLITGGPLNRELK 450 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~ 450 (1395)
..++... .||.+.
T Consensus 333 c~~v~~~-~~~~~~ 345 (753)
T PF11635_consen 333 CSLVQID-EDGKTK 345 (753)
T ss_pred ceEEEEe-cCCCce
Confidence 7776655 666544
No 459
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=68.27 E-value=4.1e+02 Score=35.61 Aligned_cols=75 Identities=13% Similarity=0.231 Sum_probs=52.7
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-----ceeEEecCCCC---------CCeeEEEEeecCCCCCcEEEEE
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKS-----TPLAVLRPYDG---------HPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-----~~l~tl~~h~~---------~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
....+|+|+|+....||.....|...|||+..+ ..+.....+.| ..-..|.|. .+...|+.+
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~----~~~~~lLv~ 221 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV----SDSNRLLVC 221 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec----CCCCEEEEE
Confidence 367899999998789999999999999999211 11111111111 123488897 777777774
Q ss_pred ecCCCeEEEEECCCC
Q 039790 443 GPLNRELKIWASAEE 457 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg 457 (1395)
....+.++|+.+.
T Consensus 222 --~r~~l~~~d~~~~ 234 (765)
T PF10214_consen 222 --NRSKLMLIDFESN 234 (765)
T ss_pred --cCCceEEEECCCC
Confidence 4788999999876
No 460
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=67.86 E-value=62 Score=43.55 Aligned_cols=10 Identities=30% Similarity=0.202 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q 039790 13 VTGGGGSGGF 22 (1395)
Q Consensus 13 ~~~~~~~~~~ 22 (1395)
..++.+.+.|
T Consensus 1796 ~~p~~psp~~ 1805 (1958)
T KOG0391|consen 1796 TIPGVPSPTF 1805 (1958)
T ss_pred cCCCCCCCCC
Confidence 3445555543
No 461
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=67.41 E-value=13 Score=47.57 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=47.1
Q ss_pred CCCeEEEEEeCCeEEEEEcCCCC-ccccccCCCCCcc----Cccccccce-EEEcccCCCeEEEEEec---CCCcEEEEE
Q 039790 325 HKQEILMLAIGNRILKIDSNRVG-KGERFSAEEPLKC----PVDELINGV-QLVGKHDGEITELSMCQ---WLTTRLASA 395 (1395)
Q Consensus 325 ~~~~lla~g~~~~ii~~d~~~~~-~~~~~s~~~~~~~----~~~~~~~~~-~~l~~h~~~V~slafsp---dg~~~LaSg 395 (1395)
+...++++..+|.++++...... .+..|.....-.. .+....... .........+..++++. ++..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 55678888888888888765522 1111111000000 000000000 01111223455566655 133799999
Q ss_pred eCCCcEEEEeCCCCceeEEecCC
Q 039790 396 SLDGTVKIWDDRKSTPLAVLRPY 418 (1395)
Q Consensus 396 s~Dg~IrIWDl~sg~~l~tl~~h 418 (1395)
+.|+++|+||+.+++++.++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999998887644
No 462
>PRK13684 Ycf48-like protein; Provisional
Probab=67.19 E-value=2.7e+02 Score=33.14 Aligned_cols=114 Identities=8% Similarity=-0.016 Sum_probs=62.6
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
..+..+.+.+++ .+++++..+.++.-.... + ..| ......-...++++.+.+++ ..++.
T Consensus 173 g~~~~i~~~~~g-~~v~~g~~G~i~~s~~~g-g--~tW----------------~~~~~~~~~~l~~i~~~~~g-~~~~v 231 (334)
T PRK13684 173 GVVRNLRRSPDG-KYVAVSSRGNFYSTWEPG-Q--TAW----------------TPHQRNSSRRLQSMGFQPDG-NLWML 231 (334)
T ss_pred ceEEEEEECCCC-eEEEEeCCceEEEEcCCC-C--CeE----------------EEeeCCCcccceeeeEcCCC-CEEEE
Confidence 345677777765 466777777666542211 0 001 11122344578999999987 55555
Q ss_pred EeCCCcEEEEeCCCCceeEEecCC---CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 395 ASLDGTVKIWDDRKSTPLAVLRPY---DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 395 gs~Dg~IrIWDl~sg~~l~tl~~h---~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
| ..|.+++=....|..-.....+ ....+.++.|. +++..+++ | .+|.|. +....+
T Consensus 232 g-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~----~~~~~~~~-G-~~G~v~-~S~d~G 289 (334)
T PRK13684 232 A-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYR----TPGEIWAG-G-GNGTLL-VSKDGG 289 (334)
T ss_pred e-cCCEEEEccCCCCCccccccCCccccccceeeEEEc----CCCCEEEE-c-CCCeEE-EeCCCC
Confidence 4 5676654223344322222211 12257889997 77776554 5 677655 445555
No 463
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=67.16 E-value=1.9e+02 Score=37.74 Aligned_cols=169 Identities=13% Similarity=0.070 Sum_probs=83.7
Q ss_pred CeEEEEEeCCeEEEEEcCCCCccccccCCCCC--ccCccccccceEEEcccCCCeEEEEEecCC-CcEEEEEeCCCcEEE
Q 039790 327 QEILMLAIGNRILKIDSNRVGKGERFSAEEPL--KCPVDELINGVQLVGKHDGEITELSMCQWL-TTRLASASLDGTVKI 403 (1395)
Q Consensus 327 ~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~--~~~~~~~~~~~~~l~~h~~~V~slafspdg-~~~LaSgs~Dg~IrI 403 (1395)
..++.++.++.|.+|+.........-.+...+ ................-...|+-|...--| ...|+.|..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 34666688888888887554331100000000 000001111111000022235555554443 258899999999999
Q ss_pred EeCCC-------C-------------ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 404 WDDRK-------S-------------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 404 WDl~s-------g-------------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
|.+.. . ++...+.-. ..+++|++.. .+...|+++++....|.||-+...+..
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~--~SaWGLdIh~---~~~~rlIAVSsNs~~VTVFaf~l~~~r--- 200 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG--ASAWGLDIHD---YKKSRLIAVSSNSQEVTVFAFALVDER--- 200 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecC--CceeEEEEEe---cCcceEEEEecCCceEEEEEEeccccc---
Confidence 96521 0 122233322 2688888841 144455555657788888877553110
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEe-----CCCC-EEEEEeCCCeEEEEEcC
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALN-----RAGL-FLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S-----~dg~-~LaSgs~Dg~I~iWdl~ 518 (1395)
........ +...+. +++|- ++|. +|++++-.|.+.+|++.
T Consensus 201 -----~~~~~s~~-~~hNIP---------~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 201 -----FYHVPSHQ-HSHNIP---------NVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred -----cccccccc-cccCCC---------eeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 00000111 111221 13332 2243 88889999999999883
No 464
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=66.38 E-value=3.8e+02 Score=34.45 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhHHHHHHh
Q 039790 1040 ERDRMQQITNLITNTINKDLPAILEKTLKKEIAAVGPAVARAI 1082 (1395)
Q Consensus 1040 ~~~rq~~ll~~vs~~l~~~~~~~~E~~l~~ei~~v~P~i~~~~ 1082 (1395)
.+.-..++-+-+..++.. ...+||..|.+-+..+.|.+-..+
T Consensus 129 ~~~~~~~lf~~l~~y~~g-~~~~l~~~l~~Ff~~Lf~~~f~ll 170 (557)
T PF01153_consen 129 NRPIFQDLFTDLRRYYLG-SNVNLEEALNEFFDRLFPRVFRLL 170 (557)
T ss_dssp THHHHHHHHHHHHHHHCC-S-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555542 235778887777777777665443
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=66.36 E-value=57 Score=41.76 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=29.3
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h 478 (1395)
.+.+++++.....+..+|++.+ .|++||+||+.++ .|+.++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~-~D~~LRiW~l~t~------------~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLS-RDHTLRIWSLETG------------QCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEE-TTSEEEEEETTTT------------CEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEe-CCCeEEEEECCCC------------eEEEEeccc
Confidence 3455555500001667888877 9999999999998 887776554
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.96 E-value=2.1e+02 Score=39.47 Aligned_cols=70 Identities=10% Similarity=0.009 Sum_probs=43.5
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
|...+.+..+...+ -++.+..-+.+-+|+.........+..-. ..++ .++..++++- .||.+.+||.
T Consensus 197 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~~~v~~h-~Dgs~~fWd~ 263 (993)
T KOG1983|consen 197 IEYESLQVLYYSPT--KILIGFNRGLVVIKDRASKYVQSAYLPNG------QLES----RDGSHFVSYH-TDGSYAFWDV 263 (993)
T ss_pred cccccceeeeecCC--Ccceeeeeeeeeehhcccccchhhccccc------ccCc----cCCceEEEEE-ecCCEEeeec
Confidence 45556666665544 34455556777777754443333333221 1125 7888888865 9999999999
Q ss_pred CCC
Q 039790 455 AEE 457 (1395)
Q Consensus 455 ~tg 457 (1395)
..+
T Consensus 264 s~g 266 (993)
T KOG1983|consen 264 SSG 266 (993)
T ss_pred CCC
Confidence 886
No 467
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.63 E-value=90 Score=38.46 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=49.5
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEE-----C----CCC-----ceE------Eec-cCCCCeEEEEEeeCC--CCEE
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILN-----I----ITA-----LRS------LLR-GHTQRVTDMAFFAED--VHLL 273 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd-----~----~~~-----~~~------~l~-~H~~~V~slaf~s~d--g~~L 273 (1395)
-.|..+..++.|..++-.+.+|.+.++= - ++| |+. .|. ...-.+.-++||+.. ...|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 3577888999999999999988765542 1 122 111 111 112246677884433 4567
Q ss_pred EEEECCCcEEEEECCCCC
Q 039790 274 ASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 274 aSgs~DgtV~IWdl~tg~ 291 (1395)
+.-+.|.+|||||+....
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 778889999999998765
No 468
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=64.52 E-value=3.1e+02 Score=32.87 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=20.8
Q ss_pred hhccHHHHHHHHhccCChHHHHHHHhcCCCCCc
Q 039790 1267 AERKYEEAFTGALHRSDVSIVSWLCSQVDLPGI 1299 (1395)
Q Consensus 1267 ~~g~~eeAf~~aL~s~d~~l~~~l~~~~~p~~l 1299 (1395)
.-+.++..|+-||..-.+.|..|-.--..-+.+
T Consensus 442 s~~~~~a~~l~al~~ekl~L~~w~~a~~s~~~~ 474 (552)
T KOG2129|consen 442 SFAVLEAIRLEALRTEKLPLIAWRLAALSHDNS 474 (552)
T ss_pred hHhhhhhhhhhhhcccccchHHHHHhhcccccc
Confidence 345677777778877667776665554444433
No 469
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=64.48 E-value=2.4e+02 Score=31.50 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHhh
Q 039790 1059 LPAILEKTLKKEIAAVGPAVARAIS 1083 (1395)
Q Consensus 1059 ~~~~~E~~l~~ei~~v~P~i~~~~~ 1083 (1395)
++..+|.+.+.++...-|.+.+-+.
T Consensus 5 ~~~~t~~~yk~imeqfnP~lrnlv~ 29 (232)
T cd07646 5 VNRLTENVYKTIMEQFNPSLRNFIA 29 (232)
T ss_pred HHHHhHHHHHHHHHccChhHHHHHH
Confidence 3566777778777777788877663
No 470
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=64.46 E-value=4.7e+02 Score=34.90 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 1134 GKQALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKHTTAIQQQ 1183 (1395)
Q Consensus 1134 v~~~i~~~~~~~~~~~liP~fe~~~~~m~~qv~~~~~~~~~e~~~~~q~~ 1183 (1395)
+...+++.++..|...+...|++....|..+|...|+..+.+........
T Consensus 426 l~~~~eK~l~~~l~e~v~~~l~~~~~d~Wd~I~~~f~~~~~~~~~~~~~~ 475 (742)
T PF05879_consen 426 LVARIEKKLKSELKEPVESLLENPSPDMWDRIRKLFESATESAVSKFSDR 475 (742)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777788888888888888999999988888887766654433
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=64.33 E-value=3.5e+02 Score=33.36 Aligned_cols=186 Identities=12% Similarity=0.059 Sum_probs=0.0
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC---------------------
Q 039790 229 NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI--------------------- 287 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl--------------------- 287 (1395)
.+|++=+.||.+.+|+.+.-....+-...----.++| .+..+.|++++.+..|.-|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y-~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCY-CPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEE-eecCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
...+.........|..+..+.+..........+...... +++...+| .+++
T Consensus 225 ~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~--Lf~l~~~G-~l~~-------------------------- 275 (418)
T PF14727_consen 225 SGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERS--LFCLKDNG-SLRF-------------------------- 275 (418)
T ss_pred ccccccceeEEECCceeEEEEEEEcCCCCceEEEEecce--EEEEcCCC-eEEE--------------------------
Q ss_pred ceEEEcccCCCeEEEEE----ecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 368 GVQLVGKHDGEITELSM----CQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slaf----spdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.+.+............ .+.....++.++.++++.|| +..+.+..-+....---..++.. .+-+-++++=
T Consensus 276 -~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy--~d~~L~WsA~l~~~PVal~v~~~----~~~~G~IV~L 348 (418)
T PF14727_consen 276 -QKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVY--EDTTLVWSAQLPHVPVALSVANF----NGLKGLIVSL 348 (418)
T ss_pred -EEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEE--eCCeEEEecCCCCCCEEEEeccc----CCCCceEEEE
Q ss_pred cCCCeEEE
Q 039790 444 PLNRELKI 451 (1395)
Q Consensus 444 s~Dg~I~I 451 (1395)
+.||.|.+
T Consensus 349 s~~G~L~v 356 (418)
T PF14727_consen 349 SDEGQLSV 356 (418)
T ss_pred cCCCcEEE
No 472
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.29 E-value=3.5e+02 Score=33.31 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 1195 LRDAINSATSITQTLSGELADGQRKLLA 1222 (1395)
Q Consensus 1195 L~~~i~~~~~~~~~~~~e~~~~~~~~~~ 1222 (1395)
+..+.+++..++..|..|+.++..+|..
T Consensus 195 ~vp~Fqsl~~~q~vf~~Emskl~~~L~~ 222 (460)
T KOG3771|consen 195 FVPTFQSLFNLQLVFHKEMSKLYKNLYD 222 (460)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777777776666544
No 473
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=64.01 E-value=91 Score=32.58 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039790 967 MSQLLAMQDMLNQMMSTQKEIQKQMNS 993 (1395)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1395)
+......++...+|-...+.+++++..
T Consensus 28 ~~~~~~~k~~~~~l~~~~~~~~~~l~~ 54 (158)
T PF03938_consen 28 FQESPAGKDAQAKLQEKFKALQKELQA 54 (158)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444
No 474
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=63.69 E-value=49 Score=30.63 Aligned_cols=52 Identities=27% Similarity=0.497 Sum_probs=35.6
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039790 967 MSQLL-AMQDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQ 1030 (1395)
Q Consensus 967 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~~lE~~l~~~~~~~~~~~~~~~~~r~~ 1030 (1395)
|..++ ++++-+.|+.-.+.+++.+++. |..+++.+..+.|..+++.+.++++
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~------------~d~s~~~~~R~~L~~~l~~lv~~mE 67 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQ------------MDPSLGRRKRRDLEQELEELVKRME 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cccccChHHHHHHHHHHHHHHHHHH
Confidence 44444 8888888887777777555444 5556666777777777777777776
No 475
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=63.14 E-value=2.1e+02 Score=30.45 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 972 AMQDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQITNLI 1051 (1395)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~~lE~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~rq~~ll~~v 1051 (1395)
.++..+.+|.+.|+++.+-|+.|.. |-.++|..=..-. .=+..+..+.+.-..+......++.+.++++.--+
T Consensus 35 ~~~~d~~~L~~~Q~~L~~e~~~l~~-----eqQ~l~~er~~l~--~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~ 107 (228)
T PRK06800 35 EIQKDHEELLAQQKSLHKELNQLRQ-----EQQKLERERQQLL--ADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEW 107 (228)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888889998888887533 3344442211111 01122222222223333334445556666666666
Q ss_pred HHhhhccchHHHHHHHHHHHH----HhhHHHHHHh
Q 039790 1052 TNTINKDLPAILEKTLKKEIA----AVGPAVARAI 1082 (1395)
Q Consensus 1052 s~~l~~~~~~~~E~~l~~ei~----~v~P~i~~~~ 1082 (1395)
...|=..--..-|+.+..-|. .|+|-+...+
T Consensus 108 t~~LwdeSi~LAEkIV~QaiDtR~l~vlPiLt~vi 142 (228)
T PRK06800 108 TELLWDQSFQLAEKIVNQAVDTRLLDVLPILTGIV 142 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 666655555677888887775 5777666544
No 476
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=62.79 E-value=6 Score=51.52 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039790 1029 FQEENAKHEKLERDRMQQIT 1048 (1395)
Q Consensus 1029 ~~~~~~~~~~~~~~rq~~ll 1048 (1395)
|+|.+|.+.+=.++||+++-
T Consensus 1408 F~dSqRVWaEYa~krqea~q 1427 (2365)
T COG5178 1408 FEDSQRVWAEYARKRQEAGQ 1427 (2365)
T ss_pred hhhHHHHHHHHHHHHHHhhh
Confidence 66777777777777777663
No 477
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=62.14 E-value=4.7e+02 Score=34.06 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=29.1
Q ss_pred CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 257 TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
.+.|.+|.| ..++..++....+|.|.+||...+
T Consensus 129 ~~kvv~Ik~-~~~~~~I~vvl~nG~i~~~d~~~~ 161 (670)
T PF10395_consen 129 DDKVVGIKF-SSDGKIIYVVLENGSIQIYDFSEN 161 (670)
T ss_pred ccceEEEEE-ecCCCEEEEEEcCCcEEEEecccc
Confidence 678999999 688999999999999999999443
No 478
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=61.97 E-value=4.6e+02 Score=33.89 Aligned_cols=158 Identities=11% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 972 AMQDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQITNLI 1051 (1395)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~~lE~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~rq~~ll~~v 1051 (1395)
.++....+|-.+..+.++.+......--.+.+++++..+..+++..+.+..+.+-..|+.++...++...++.++-|+.-
T Consensus 259 ~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~ 338 (582)
T PF09731_consen 259 RIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQ 338 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhccchHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039790 1052 TNTINKDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEKAVSQLEKSVSSKLETTVARQIQAQFQ 1131 (1395)
Q Consensus 1052 s~~l~~~~~~~~E~~l~~ei~~v~P~i~~~~~~~v~~~l~~~v~~~l~~~v~~~~~~~l~~~v~~~l~~~v~~~i~~~~~ 1131 (1395)
...+ .+.++..|...-....-.....+...|++--...+.+ |...... ++.|++.+.........+.-..++.
T Consensus 339 ~~~~----~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~-l~~~~~~--~~~le~~~~~~~~~~~~~~~~~~l~ 411 (582)
T PF09731_consen 339 EEAH----EEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAK-LAELNSR--LKALEEALDARSEAEDENRRAQQLW 411 (582)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhH
Q 039790 1132 TSGKQ 1136 (1395)
Q Consensus 1132 ~~v~~ 1136 (1395)
.++..
T Consensus 412 ~a~~~ 416 (582)
T PF09731_consen 412 LAVDA 416 (582)
T ss_pred HHHHH
No 479
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=61.60 E-value=3.6e+02 Score=32.60 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=28.0
Q ss_pred ecCCCEEEEEEcCC-----------eEEEEECCCCceEEeccC-CCCeEE-EEEeeCCCCEEEEEECC
Q 039790 225 AVNRNYICYGLKLG-----------NIRILNIITALRSLLRGH-TQRVTD-MAFFAEDVHLLASASVD 279 (1395)
Q Consensus 225 Spdg~~LasGs~DG-----------~IrIWd~~~~~~~~l~~H-~~~V~s-laf~s~dg~~LaSgs~D 279 (1395)
..++.+.+.|+.+. .+..||..+..-..+... ...... .+....++.+.+.||.+
T Consensus 82 ~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 82 FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 44677777776532 466788777643332211 111111 11101467778887764
No 480
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.41 E-value=77 Score=38.37 Aligned_cols=122 Identities=13% Similarity=0.179 Sum_probs=70.0
Q ss_pred EEcCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 234 GLKLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
+...|.+.=|-+... ....-....++|.++.| +.|.+.|+.--.|++|.+++.......... ...
T Consensus 39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkF-SlDnkilAVQR~~~~v~f~nf~~d~~~l~~----------~~~ 107 (657)
T KOG2377|consen 39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKF-SLDNKILAVQRTSKTVDFCNFIPDNSQLEY----------TQE 107 (657)
T ss_pred EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEe-ccCcceEEEEecCceEEEEecCCCchhhHH----------HHH
Confidence 334455666665542 12222335679999999 999999999999999999998543310000 000
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
.......+...+|..... +..... +-.++..+.. ...++..+.|...|+-..|+++.
T Consensus 108 ck~k~~~IlGF~W~~s~e-~A~i~~~G~e~y~v~pe---------------------krslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 108 CKTKNANILGFCWTSSTE-IAFITDQGIEFYQVLPE---------------------KRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred hccCcceeEEEEEecCee-EEEEecCCeEEEEEchh---------------------hhhhhhhhhcccCccEEEEcccc
Confidence 011223355677876633 333322 2222222221 11155666788889999999886
No 481
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=60.58 E-value=3e+02 Score=31.30 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH------HhhHHHHHHhhHHHHHHH
Q 039790 1017 VVKANSDALWARFQEENAKHEKLERDRMQQITNLITNTINKDLPAILEKTLKKEIA------AVGPAVARAISPTLEKSI 1090 (1395)
Q Consensus 1017 ~~~~~~~~~~~r~~~~~~~~~~~~~~rq~~ll~~vs~~l~~~~~~~~E~~l~~ei~------~v~P~i~~~~~~~v~~~l 1090 (1395)
.|..-|..++..|+.+.+.|...+..|+..|-..|. .||+.|..|+. ..+-.........+...+
T Consensus 9 ~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~---------~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v 79 (247)
T PF06705_consen 9 SINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQ---------KLEKALEAEVKRRVESNKKLQSKFEEQINNMQERV 79 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhchhhHHHHHHHHHHHH--HHH
Q 039790 1091 SSAIMESFQKGVGEKAVSQLEKSVSSKLETTVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFEQI--DST 1168 (1395)
Q Consensus 1091 ~~~v~~~l~~~v~~~~~~~l~~~v~~~l~~~v~~~i~~~~~~~v~~~i~~~~~~~~~~~liP~fe~~~~~m~~qv--~~~ 1168 (1395)
.+.+..-+... ...+..|.+.+ ..|...|.... ......+ +.+...|...|.-.++..-..--.+. ...
T Consensus 80 ~~~~~~~~~~~--~~~l~~L~~ri-~~L~~~i~ee~-----~~r~~~i-e~~~~~l~~~l~~l~~~~~~Er~~R~erE~~ 150 (247)
T PF06705_consen 80 ENQISEKQEQL--QSRLDSLNDRI-EALEEEIQEEK-----EERPQDI-EELNQELVRELNELQEAFENERNEREEREEN 150 (247)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHH-----HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Q 039790 1169 FQKGLIKHTTAIQQQFETAH-------SPMAIALRDAINSATSITQTLSG----ELADGQRKLLAMAAAG 1227 (1395)
Q Consensus 1169 ~~~~~~e~~~~~q~~~~~~~-------~~l~~~L~~~i~~~~~~~~~~~~----e~~~~~~~~~~~~~~~ 1227 (1395)
+-+.+.+....++..++..+ ..|...|.+....-...-..|+. ||..++..|..-...+
T Consensus 151 i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R 220 (247)
T PF06705_consen 151 ILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQER 220 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=60.42 E-value=3.5e+02 Score=32.12 Aligned_cols=65 Identities=23% Similarity=0.421 Sum_probs=38.5
Q ss_pred CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE-EEecCCCCCccEEEEeCC---CCeEEEEEe
Q 039790 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI-QILADGDSVHPRVCWHPH---KQEILMLAI 334 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l-~~~~~~~~~v~~v~~sp~---~~~lla~g~ 334 (1395)
.-+.|+| .+||.+|++ -..|.|++++ ..+.. ...+..+ .+....+.....++++|+ ...+++...
T Consensus 3 ~P~~~a~-~pdG~l~v~-e~~G~i~~~~-~~g~~--------~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAF-LPDGRLLVA-ERSGRIWVVD-KDGSL--------KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEE-ETTSCEEEE-ETTTEEEEEE-TTTEE--------CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEE-eCCCcEEEE-eCCceEEEEe-CCCcC--------cceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 4578999 889887775 5599999999 44430 0111111 123344556678999994 345555554
No 483
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=60.31 E-value=3.4e+02 Score=31.93 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=27.7
Q ss_pred EEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 403 IWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 403 IWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
++|+.+++.+.. |.. -..+-.|. +|++.++ .+..|.|.-+|..+|
T Consensus 189 vidv~s~evl~~--GLs--mPhSPRWh-----dgrLwvl-dsgtGev~~vD~~~G 233 (335)
T TIGR03032 189 VIDIPSGEVVAS--GLS--MPHSPRWY-----QGKLWLL-NSGRGELGYVDPQAG 233 (335)
T ss_pred EEEeCCCCEEEc--Ccc--CCcCCcEe-----CCeEEEE-ECCCCEEEEEcCCCC
Confidence 456666654422 221 23445563 6766665 558899999998776
No 484
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.28 E-value=2.7e+02 Score=30.73 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEeeCCCCEEEEEECCC--cEEEEECCCCC
Q 039790 262 DMAFFAEDVHLLASASVDG--RFFIWNITEGP 291 (1395)
Q Consensus 262 slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~ 291 (1395)
.+.+ .+|+++.+.|.-| .|++||+.+|+
T Consensus 50 GL~~--~~g~i~esTG~yg~S~ir~~~L~~gq 79 (262)
T COG3823 50 GLEY--LDGHILESTGLYGFSKIRVSDLTTGQ 79 (262)
T ss_pred ceee--eCCEEEEeccccccceeEEEeccCce
Confidence 4444 3567777776654 59999999887
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=59.60 E-value=1.8e+02 Score=33.74 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCEEEEEE-cCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEE------CCCcEEEEECCCCCCCCCCccc
Q 039790 228 RNYICYGL-KLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASAS------VDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 228 g~~LasGs-~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs------~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
|.+=..|+ .-..|++||..+.. ...-.+-.+.|++|.| ..+..+++.|. ....+..||+.+..
T Consensus 5 G~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~-~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-------- 75 (281)
T PF12768_consen 5 GSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGTVTDLQW-ASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-------- 75 (281)
T ss_pred eecCCCCCcCCCEEEEEECCCCEeecCCCCceEEEEEEEE-ecCCEEEEEEeeEECCCCceeEEEEecCCCe--------
Q ss_pred ccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC---
Q 039790 300 LGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD--- 376 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~--- 376 (1395)
...+.+-.
T Consensus 76 ---------------------------------------------------------------------w~~~~~~~s~~ 86 (281)
T PF12768_consen 76 ---------------------------------------------------------------------WSSLGGGSSNS 86 (281)
T ss_pred ---------------------------------------------------------------------eeecCCccccc
Q ss_pred --CCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeec---------CCCCCcEEE
Q 039790 377 --GEITELSMCQWLTTRLASASL----DGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIG---------PHPQHIVLI 440 (1395)
Q Consensus 377 --~~V~slafspdg~~~LaSgs~----Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~---------~~pdg~~L~ 440 (1395)
+.|+.+.+...+...+..++. +..|..||-.++..+.. ..+... .|..+.+.+. .-.+.+.|+
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t-~I~~l~~~~l~~~~~~~~~~~~~~~~Ll 165 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGT-TIRGLQVLPLNSSSHDNSSLFDSDQVLL 165 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCC-EEEEEEEEeccccccccccccCCCcEEE
Q ss_pred EEe
Q 039790 441 TGG 443 (1395)
Q Consensus 441 s~G 443 (1395)
..|
T Consensus 166 v~G 168 (281)
T PF12768_consen 166 VTG 168 (281)
T ss_pred EEe
No 486
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=59.32 E-value=1.5e+02 Score=36.45 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=25.3
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg 409 (1395)
+..|..++..+.. ++|++.+.+|.|.+||+..+
T Consensus 189 ~~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 189 RPKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp ---EEEEEEETTT-TEEEEEESSE-EEEEEE-SS
T ss_pred hhceeeEEecCCc-CEEEEEeCCCcEEEEEEeCC
Confidence 3449999998877 89999999999999999753
No 487
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=59.10 E-value=43 Score=40.22 Aligned_cols=168 Identities=11% Similarity=0.077 Sum_probs=94.2
Q ss_pred eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC----Ccc-EEEEeCCCC
Q 039790 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS----VHP-RVCWHPHKQ 327 (1395)
Q Consensus 253 l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~----~v~-~v~~sp~~~ 327 (1395)
+..-...|..+-. .|||++|..-+. .++.|+++.+..... -++..+..+ .|+ .+..-..+-
T Consensus 216 L~~~~~~v~qllL-~Pdg~~LYv~~g-~~~~v~~L~~r~l~~------------rkl~~dspg~~~~~Vte~l~lL~Gg~ 281 (733)
T COG4590 216 LSVPFSDVSQLLL-TPDGKTLYVRTG-SELVVALLDKRSLQI------------RKLVDDSPGDSRHQVTEQLYLLSGGF 281 (733)
T ss_pred cCCCccchHhhEE-CCCCCEEEEecC-CeEEEEeecccccch------------hhhhhcCCCchHHHHHHHHHHHhCce
Confidence 4444456667777 899998877665 689999998765210 011111111 111 111122334
Q ss_pred eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 039790 328 EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR 407 (1395)
Q Consensus 328 ~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~ 407 (1395)
.+++...++.+-.|.+.+.+....++. ++.+.-....+..+.-... .+-+++-+..|++.++...
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h--------------~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st 346 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNH--------------IRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYST 346 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCccee--------------eeccccCcccceeeccccc-cceEEEEcCCCceeeeecc
Confidence 567777777788887654332211110 1112112222332222111 2467777788888887655
Q ss_pred CCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 408 KSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 408 sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
..+.+-.-...+ .+.-+++| |.+.+|++ - +.|.|+++.+.+.
T Consensus 347 ~~~~lL~~~~~~--~~~~~~~S----p~~~~Ll~-e-~~gki~~~~l~Nr 388 (733)
T COG4590 347 SEKLLLFERAYQ--APQLVAMS----PNQAYLLS-E-DQGKIRLAQLENR 388 (733)
T ss_pred cCcceehhhhhc--CcceeeeC----cccchhee-e-cCCceEEEEecCC
Confidence 554443333333 57789999 99999987 3 6789999998775
No 488
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=58.69 E-value=4.2e+02 Score=32.46 Aligned_cols=112 Identities=10% Similarity=0.068 Sum_probs=61.7
Q ss_pred CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc--ccCCCeEEEEEecCCCcE
Q 039790 314 DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG--KHDGEITELSMCQWLTTR 391 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~--~h~~~V~slafspdg~~~ 391 (1395)
...+..+.|.+++. ++.++.++.+++-.+.... |.. ....... .-...++++.|..++ ..
T Consensus 280 ~~~l~~v~~~~dg~-l~l~g~~G~l~~S~d~G~~---------------~~~-~~f~~~~~~~~~~~l~~v~~~~d~-~~ 341 (398)
T PLN00033 280 ARRIQNMGWRADGG-LWLLTRGGGLYVSKGTGLT---------------EED-FDFEEADIKSRGFGILDVGYRSKK-EA 341 (398)
T ss_pred ccceeeeeEcCCCC-EEEEeCCceEEEecCCCCc---------------ccc-cceeecccCCCCcceEEEEEcCCC-cE
Confidence 34456788887775 5556666665554332110 000 0011111 112358899999876 44
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEec---CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 392 LASASLDGTVKIWDDRKSTPLAVLR---PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 392 LaSgs~Dg~IrIWDl~sg~~l~tl~---~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
+.++.+|.|.... ..|+.-.... .-.. ..+.+.|. .+++.+++ | .+|.|.-|
T Consensus 342 -~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~-~ly~v~f~----~~~~g~~~-G-~~G~il~~ 396 (398)
T PLN00033 342 -WAAGGSGILLRST-DGGKSWKRDKGADNIAA-NLYSVKFF----DDKKGFVL-G-NDGVLLRY 396 (398)
T ss_pred -EEEECCCcEEEeC-CCCcceeEccccCCCCc-ceeEEEEc----CCCceEEE-e-CCcEEEEe
Confidence 4555678776664 4444333322 2223 68899997 56666665 6 78987665
No 489
>PLN02193 nitrile-specifier protein
Probab=58.56 E-value=4.6e+02 Score=32.85 Aligned_cols=250 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred EEecCCCEEEEEEcC-------CeEEEEECCCCceEEeccCC-----CCeEEEEEeeCCCCEEEEEECC-----CcEEEE
Q 039790 223 QIAVNRNYICYGLKL-------GNIRILNIITALRSLLRGHT-----QRVTDMAFFAEDVHLLASASVD-----GRFFIW 285 (1395)
Q Consensus 223 a~Spdg~~LasGs~D-------G~IrIWd~~~~~~~~l~~H~-----~~V~slaf~s~dg~~LaSgs~D-----gtV~IW 285 (1395)
+...++.+++.|+.+ ..+.+||..+..-..+.... ........ .-++.+++.|+.+ ..+.+|
T Consensus 171 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v-~~~~~lYvfGG~~~~~~~ndv~~y 249 (470)
T PLN02193 171 IAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMV-SIGSTLYVFGGRDASRQYNGFYSF 249 (470)
T ss_pred EEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEE-EECCEEEEECCCCCCCCCccEEEE
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCe------EEEEEcCCCCccccccCCCCCc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNR------ILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~------ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|+.+.. ...+.............+....++.|++.|..+. +..++...
T Consensus 250 D~~t~~------------W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t-------------- 303 (470)
T PLN02193 250 DTTTNE------------WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD-------------- 303 (470)
T ss_pred ECCCCE------------EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC--------------
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC----CcEEEEeCCCCceeEEecC---CCCCCeeEEEEeecC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD----GTVKIWDDRKSTPLAVLRP---YDGHPVNCVTFLIGP 432 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D----g~IrIWDl~sg~~l~tl~~---h~~~~V~sV~fs~~~ 432 (1395)
..|..................+.+ ++ ++++.++.+ ..|.+||+.+.+-...-.. .......+++..
T Consensus 304 -~~W~~~~~~~~~~~~R~~~~~~~~--~g-kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--- 376 (470)
T PLN02193 304 -KKWFHCSTPGDSFSIRGGAGLEVV--QG-KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--- 376 (470)
T ss_pred -CEEEeCCCCCCCCCCCCCcEEEEE--CC-cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE---
Q ss_pred CCCCcEEEEEecCC-------------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC
Q 039790 433 HPQHIVLITGGPLN-------------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA 499 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~D-------------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d 499 (1395)
++++++.+|..+ ..+.+||+.+. .|..+..+......... ..-...........
T Consensus 377 --~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~----------~W~~~~~~~~~~~~P~~-R~~~~~~~~~~~~~ 443 (470)
T PLN02193 377 --GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL----------QWERLDKFGEEEETPSS-RGWTASTTGTIDGK 443 (470)
T ss_pred --CCEEEEECCccCCccccccCccceeccEEEEEcCcC----------EEEEcccCCCCCCCCCC-CccccceeeEEcCC
Q ss_pred CCEEEEEeCC------CeEEEEEcCC
Q 039790 500 GLFLLANAKK------NAIYAIHMDY 519 (1395)
Q Consensus 500 g~~LaSgs~D------g~I~iWdl~~ 519 (1395)
..+++.|+.+ +-++++++++
T Consensus 444 ~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 444 KGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred ceEEEEcCCCCccccccceEEEecCC
No 490
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=58.49 E-value=32 Score=31.25 Aligned_cols=66 Identities=14% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Q 039790 1010 LGRSIEKVVKANSDALWARFQ-EENAKHEKLERDRMQQITNLITNTINKDLPAILEKTLKKEIAAVG 1075 (1395)
Q Consensus 1010 l~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~rq~~ll~~vs~~l~~~~~~~~E~~l~~ei~~v~ 1075 (1395)
++..-...+...|++|..-+. -........+.--.+-|-=|+.+-|.+||+..||+.+++||..++
T Consensus 5 is~~~~~~~~~~f~~L~~~~~~~~~~~~~TlE~lvremLRPmLkeWLD~nLP~lVErlVr~EIeRi~ 71 (73)
T PF10691_consen 5 ISPETAEAVASAFAKLASAIRQISPSSGRTLEDLVREMLRPMLKEWLDENLPGLVERLVREEIERIA 71 (73)
T ss_pred cChhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
No 491
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=58.12 E-value=6.3e+02 Score=34.30 Aligned_cols=240 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred eEEEEECCCCceEEeccCCCC-----eEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC
Q 039790 239 NIRILNIITALRSLLRGHTQR-----VTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG 313 (1395)
Q Consensus 239 ~IrIWd~~~~~~~~l~~H~~~-----V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~ 313 (1395)
.|+++|..++....+-.|... |.++.|++.+...++..+.+.+-.+|-..-..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~---------------------- 911 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISS---------------------- 911 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCC----------------------
Q ss_pred CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 314 DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 314 ~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
+.++.+.....+.. +..+....-.-.-.+++|.. . .+
T Consensus 912 ----------------------g~~ytyk~~~~g~~-------------------lellh~T~~~~~v~Ai~~f~-~-~~ 948 (1205)
T KOG1898|consen 912 ----------------------GFVYTYKFVRNGDK-------------------LELLHKTEIPGPVGAICPFQ-G-RV 948 (1205)
T ss_pred ----------------------CceEEEEEEecCce-------------------eeeeeccCCCccceEEeccC-C-EE
Q ss_pred EEeCCCcEEEEeCCCCceeEEecCCC-CCCeeEEEEeecCCCCCcEEEEEecCCCeE-EEEECCCCCCCCCCCCcccccE
Q 039790 394 SASLDGTVKIWDDRKSTPLAVLRPYD-GHPVNCVTFLIGPHPQHIVLITGGPLNREL-KIWASAEEEGWLLPSDIESWKC 471 (1395)
Q Consensus 394 Sgs~Dg~IrIWDl~sg~~l~tl~~h~-~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I-~IWDl~tg~~~~~~~~~~~~~~ 471 (1395)
-++....+++||+...++++..+... ...|+++.|. +..++++...|+.. ..|+-... +.
T Consensus 949 LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~------~~RI~VgD~qeSV~~~~y~~~~n------------~l 1010 (1205)
T KOG1898|consen 949 LAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY------GARIVVGDIQESVHFVRYRREDN------------QL 1010 (1205)
T ss_pred EEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec------ceEEEEeeccceEEEEEEecCCC------------eE
Q ss_pred EEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc--------------------ceeee
Q 039790 472 TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST--------------------RMDYI 531 (1395)
Q Consensus 472 l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~--------------------~~~~i 531 (1395)
+.-....-..... ..+--|-..++.+..=|.+++..+......... +++.+
T Consensus 1011 ~~fadD~~pR~Vt---------~~~~lD~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~k~~~~~g~lN~~~~K~~~i 1081 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVT---------ALELLDYDTVAGADRFGNIAVVRIPPDVSEEASEDPTELKIAWEQGFLNDAPQKVQLI 1081 (1205)
T ss_pred EEEeCCCccceee---------EEEEecCCceeeccccCcEEEEECCCcchhhhccCCccccceecccccccccHhhhhh
Q ss_pred eeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCceeeecccceEEecC
Q 039790 532 AEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPP 581 (1395)
Q Consensus 532 ~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~ 581 (1395)
..|.....+.++.... ...++....+|-.--|.+- |+.+
T Consensus 1082 ~~f~v~Dvits~q~~~---~i~~a~e~~iy~tl~GtiG--------~f~p 1120 (1205)
T KOG1898|consen 1082 SQFFVGDVITSLQKVS---SIPGARESLIYTTLLGTIG--------VFAP 1120 (1205)
T ss_pred hhccccCeeeeceeee---eccCCcceeeeeeccccce--------EEee
No 492
>PHA03378 EBNA-3B; Provisional
Probab=57.96 E-value=77 Score=39.97 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q 039790 15 GGGGSGGFDMNKLLKPS-SNPMNMIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPPTGPY-PPYHYYPSPPPPQHQL 92 (1395)
Q Consensus 15 ~~~~~~~~~~~~~~~p~-~~p~p~~~~~~~p~~~p~~p~~~~~~ppp~~~~~p~~~pp~t~p~-~p~~~~p~~~~p~~~~ 92 (1395)
++-+.++.--++-..|+ ..|-..-+++..+.+.+++.+-|...-+|...+++.+||.+++-. .+..+.|.+-+++.+.
T Consensus 691 p~~~~pP~~aP~p~~pPa~~P~~~qpP~~ap~p~~PPa~tP~~~~~Pa~aP~p~~PPa~aP~~~~~P~~AP~~~~PPa~t 770 (991)
T PHA03378 691 PGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAA 770 (991)
T ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q ss_pred cchh-hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhH
Q 039790 93 FQQQ-QQQQQNRPQILYPQQIPQPPSPSHNPNPNSTSSSSSGNNLLM 138 (1395)
Q Consensus 93 ~~~~-qq~q~~~p~~~~p~ppppp~~~p~~~~p~~~~~~~~~g~~l~ 138 (1395)
...+ .+++++-+..+...|.-.|.+.|++..+. ....||
T Consensus 771 PgaptP~~pPq~~P~~~Qrp~gaPtP~ppPQ~~P-------~~~q~~ 810 (991)
T PHA03378 771 PGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGP-------TSMQLM 810 (991)
T ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC-------ccceec
No 493
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=56.99 E-value=4.4e+02 Score=32.18 Aligned_cols=218 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhc-chhhhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039790 979 QMMSTQKEIQKQMNSVVS-APVNKEG-KRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQITNLITNTIN 1056 (1395)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~-~~~~ke~-~~lE~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~rq~~ll~~vs~~l~ 1056 (1395)
++.+|--++.+--..+.. ..++|-. +-|+...+..+..++++--..-.+.+.++.-++=.....++ |...|-
T Consensus 231 E~vamalD~fq~gRai~aar~i~k~ae~vlk~g~ge~L~eai~~gs~e~i~~lA~~~GkqVs~qv~~q------v~~~ma 304 (473)
T PRK15362 231 EIVAMALDVFQIGRAFMATRGIAKAAEKVLDSGAGEELVERMVGGSEEAIEELAEEFGKQVSEQVSKQ------VANELA 304 (473)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q ss_pred ccchHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhH
Q 039790 1057 KDLPAILEKTLKKEIAAVGPAVARAISPTLEKSISSAIMESFQKGVGEKAVSQLEKSVSSKLETTVARQIQAQFQTSGKQ 1136 (1395)
Q Consensus 1057 ~~~~~~~E~~l~~ei~~v~P~i~~~~~~~v~~~l~~~v~~~l~~~v~~~~~~~l~~~v~~~l~~~v~~~i~~~~~~~v~~ 1136 (1395)
+...+..+++=++...+++-+. +...|++.+..++.+-+++.+.+-+ +.+...++..|.+.+ +...++.
T Consensus 305 eeaaefa~~~e~nm~~~l~ksF---TkEgIekmVt~ave~a~kkAiKkG~-----~itaeeitkqVvk~V---~kevika 373 (473)
T PRK15362 305 EESAEFSRNVEKNMTRSLGKAF---TKEAIEAMVTEAVEEALKKAVQEGV-----KFLLKEFTKQVVKEV---FKKVIKA 373 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhhh-----HhHHHHHHHHHHHHH---HHHHHHH
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhccchHHHHHHHHHHHHHHHH
Q 039790 1137 ALQDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKHTTAI----------QQQFETAHSPMAIALRDAINSATSIT 1206 (1395)
Q Consensus 1137 ~i~~~~~~~~~~~liP~fe~~~~~m~~qv~~~~~~~~~e~~~~~----------q~~~~~~~~~l~~~L~~~i~~~~~~~ 1206 (1395)
.|.++....+. ++-++......++.-+...=+.+++..++++ ....|..|.....+|.+.++....+.
T Consensus 374 ~ik~~~~s~l~--~~r~~~~g~~~i~~G~i~~ekA~LQK~Ie~LIl~q~f~qF~~e~~ek~Kk~q~k~l~~l~~~ag~~l 451 (473)
T PRK15362 374 LIRACSFKGLQ--AIRCTTEGANQINTGMINTEKAKLQKKIEQLILQQRFLDFIMEQYEKQKKIEQKRLEELYKGSGAAL 451 (473)
T ss_pred HHHHHhccHHH--HHHHHHHHHHHhhhchhhHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHH
Q 039790 1207 QTLSGELAD 1215 (1395)
Q Consensus 1207 ~~~~~e~~~ 1215 (1395)
.....-+.+
T Consensus 452 ~~~~d~i~q 460 (473)
T PRK15362 452 RDALDAIDQ 460 (473)
T ss_pred HHHHHHHHh
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=56.40 E-value=33 Score=26.69 Aligned_cols=42 Identities=19% Similarity=0.045 Sum_probs=0.0
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEe
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
|++..++++...++.|.++|..++..+..+.. .. ....++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~-~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GG-YPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CC-CCceEEeC
No 495
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=56.30 E-value=2.1e+02 Score=30.15 Aligned_cols=143 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Q 039790 978 NQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERD---RMQQITNLITNT 1054 (1395)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~ke~~~lE~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~---rq~~ll~~vs~~ 1054 (1395)
+-+-..+++++++++.+...+-..| +-++|+.+.|.+..+|++-+..-+.+..+ ..+.+++-+..-
T Consensus 3 ~~~~e~~~~~~~~~~~~~~~~~~~E-----------v~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~k 71 (155)
T PF07464_consen 3 QHAQEFQKEFQEQVNKLLGSQNQQE-----------VVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTK 71 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTSS--SS------------SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q ss_pred hhccchHHHHHHHHHHHHHhhHHHHHHhhHHHHHHH---HHHHHHHHhhchhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039790 1055 INKDLPAILEKTLKKEIAAVGPAVARAISPTLEKSI---SSAIMESFQKGVGEKAVSQLEKSVSSKLETTVARQIQAQFQ 1131 (1395)
Q Consensus 1055 l~~~~~~~~E~~l~~ei~~v~P~i~~~~~~~v~~~l---~~~v~~~l~~~v~~~~~~~l~~~v~~~l~~~v~~~i~~~~~ 1131 (1395)
| .+.+++.-+. -+.|+++. ...|+.+++..+.+ ..++...|...+
T Consensus 72 l----~et~~~L~k~-------------~Pev~~qa~~l~e~lQ~~vq~l~~E----------~qk~~k~v~~~~----- 119 (155)
T PF07464_consen 72 L----EETAEKLRKA-------------NPEVEKQANELQEKLQSAVQSLVQE----------SQKLAKEVSENS----- 119 (155)
T ss_dssp H----HHHHHGGGG--------------SHHHHHT-SSSHHHHHHHHHHHHHH----------HHHHHHHHHS-------
T ss_pred H----HHHHHHHHhc-------------ChHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH-----
Q ss_pred hhhhHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHH
Q 039790 1132 TSGKQALQDALRSNLETSIIPAFEMSCKAMFEQIDST 1168 (1395)
Q Consensus 1132 ~~v~~~i~~~~~~~~~~~liP~fe~~~~~m~~qv~~~ 1168 (1395)
.-++.-|+..++..+-. |-..++.+-++|..+
T Consensus 120 ~~~~e~l~~~~K~~~D~-----~~k~~~~~~~~l~~a 151 (155)
T PF07464_consen 120 EGANEKLQPAIKQAYDD-----AVKAAQKVQKQLHEA 151 (155)
T ss_dssp -SS-GGGHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
No 496
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=55.59 E-value=3.1e+02 Score=37.32 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCC
Q 039790 1 MASNQAGGGGGGVTGGGGSGGFDMNKLLKPS-SNPMNMIPNSTNLTTSPSFPSPSSVSSPSPYL--------TPSSSYPP 71 (1395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~p~p~~~~~~~p~~~p~~p~~~~~~ppp~~~--------~~p~~~pp 71 (1395)
++.+++..-+..++=.--.|+..+......+ .+...|-.+...|+++.=.|.+|.+.|-.|.+ +....|.|
T Consensus 1438 ~~~sp~~s~~ssp~~s~tsp~ysptsp~ys~tsp~~sptspsysptspsysptspsysptspsysptspsysptspsysp 1517 (1605)
T KOG0260|consen 1438 SPASPGSSYSSSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1517 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHhhhccCCCCCCC
Q 039790 72 PTGPY-PPYHYYPSPPPPQHQLFQQQQQQQQNRPQILYPQQIPQPPSPSHNPNPNSTSSSSSGNNLLMAFFANQHQHQPP 150 (1395)
Q Consensus 72 ~t~p~-~p~~~~p~~~~p~~~~~~~~qq~q~~~p~~~~p~ppppp~~~p~~~~p~~~~~~~~~g~~l~~ll~~~~~~~~~ 150 (1395)
..|.| +.+.+|.+..|.=.|..|.- .|-.+.-.|..|.-.+..|.-.++..+.++.+.... -.+..+...+
T Consensus 1518 tspsysptspsysptspsysptspsy------sptspsysptspsysptsp~ysptspsysptspsys--~~~~ysp~sp 1589 (1605)
T KOG0260|consen 1518 TSPSYSPTSPSYSPTSPSYSPTSPSY------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--TSPSYSPTSP 1589 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc--CCCCCCCCCC
Q ss_pred cccCCCCC
Q 039790 151 SPTLPPPS 158 (1395)
Q Consensus 151 ~~s~p~p~ 158 (1395)
..+...|.
T Consensus 1590 ~ysptsp~ 1597 (1605)
T KOG0260|consen 1590 SYSPTSPS 1597 (1605)
T ss_pred CCCCCCCC
No 497
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=54.59 E-value=1.7e+02 Score=37.95 Aligned_cols=230 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCe------EEEEEeeCCCCEEEEEECCCcEE------
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRV------TDMAFFAEDVHLLASASVDGRFF------ 283 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V------~slaf~s~dg~~LaSgs~DgtV~------ 283 (1395)
.+.|...+||.|.+.++....+..|.+++..-..+....-..... ..+-| ......+-.-+.-..+|
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgW-gkketqfrgk~~raqlrdptmp~ 190 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGW-GKKETQFRGKGARAQLRDPTMPY 190 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeee-cccchhccccchhhhccCCCCcc
Q ss_pred ------EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCC
Q 039790 284 ------IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEP 357 (1395)
Q Consensus 284 ------IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~ 357 (1395)
+.++.+++ ..++|..+..+.+++.....-.+-...-...+..-+...+
T Consensus 191 ~vD~G~l~avd~~k--------------------------~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep 244 (1243)
T COG5290 191 MVDYGDLFAVDTNK--------------------------KIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEP 244 (1243)
T ss_pred cccccceeEeeCCc--------------------------eEEEEccCcceeeecchhcccccceeeeccccccccccCC
Q ss_pred CccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCc-----EEEEe---CCCCceeEEecCCCCCCeeEEEEe
Q 039790 358 LKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGT-----VKIWD---DRKSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 358 ~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~-----IrIWD---l~sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
.++.-..++|-|.| ..++|-..||. |.++. ++.|..-........ +..++|.
T Consensus 245 -----------------~~g~e~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk--~~~~~wn 304 (1243)
T COG5290 245 -----------------VTGMEHQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEK--AFLENWN 304 (1243)
T ss_pred -----------------cccchhccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhh--hhhhhhh
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK 509 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D 509 (1395)
-....++. . ..+.|++|-..+. .|-+...+...... -+.|.|....-+--...
T Consensus 305 ----~~s~vlav-~-~~n~~~lwttkNy----------hWYLK~e~~ip~~s-----------~vkwhpe~~nTl~f~d~ 357 (1243)
T COG5290 305 ----LLSTVLAV-A-EGNLLKLWTTKNY----------HWYLKVERQIPGIS-----------YVKWHPEEKNTLLFRDG 357 (1243)
T ss_pred ----HHHHHHHH-h-hcceEEEEEccce----------EEEEEEeecCCCcc-----------eeeeccccCcEEEEecC
Q ss_pred CeEEEEEcCC
Q 039790 510 NAIYAIHMDY 519 (1395)
Q Consensus 510 g~I~iWdl~~ 519 (1395)
+.|....+..
T Consensus 358 ~~I~~V~f~~ 367 (1243)
T COG5290 358 ERILRVFFSE 367 (1243)
T ss_pred CeEEEEEeeh
No 498
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=54.46 E-value=72 Score=37.91 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q 039790 1 MASNQAGGGGGGVTGGGGSGGFDMNKLLKPSSNPMNMIPNSTNLTTSPSFPSPSSVSSPSPYLTPSSSYPPPTGPY-PPY 79 (1395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~p~~~~~~~p~~~p~~p~~~~~~ppp~~~~~p~~~pp~t~p~-~p~ 79 (1395)
||.++.-..-...-+.-..+...-.+.|.++.-|++.+..+++|.+.|..|+.+..++++- .|+.+|+.+++. .++
T Consensus 303 ~a~P~~~aP~~~~~ps~~~~a~~~p~~~q~p~~Pp~~~l~Pppp~p~p~~PP~p~~~~~~r---~P~gppp~~P~~l~p~ 379 (487)
T KOG4672|consen 303 TAIPEPDAPLQPIHPSTFAGAAASPTNFQPPYGPPPGMLFPPPPPPPPMRPPHPGNGMPPR---MPPGPPPGPPHGLSPP 379 (487)
T ss_pred ccCCCCCCCcccCCcccccccccccCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCcchhhhhhc
Q 039790 80 HYYPSPPPPQHQLFQQQQQQQQ 101 (1395)
Q Consensus 80 ~~~p~~~~p~~~~~~~~qq~q~ 101 (1395)
..++.++...+..+...+|...
T Consensus 380 ~p~Gp~p~~f~~pp~li~~pk~ 401 (487)
T KOG4672|consen 380 NPMGPPPSSFQAPPELIRQPKA 401 (487)
T ss_pred CCCCCCCccccCchHhhccCCC
No 499
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=54.32 E-value=4.1e+02 Score=30.93 Aligned_cols=265 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCC
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLG 238 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG 238 (1395)
.....+..+.-+++.|+..|+...+.|.-..-.+... |...|+|..++..|.
T Consensus 97 ~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg----------------------------v~vsGn~aYVadldd 148 (370)
T COG5276 97 EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG----------------------------VYVSGNYAYVADLDD 148 (370)
T ss_pred cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE----------------------------EEecCCEEEEeeccC
Q ss_pred eEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 239 NIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 239 ~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
.+.++|+.+. ....+....+.-+.++. .|++-..+..|+-+.|-|+.... .-.+.++-+
T Consensus 149 gfLivdvsdpssP~lagrya~~~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~--------------sPvli~~~n 211 (370)
T COG5276 149 GFLIVDVSDPSSPQLAGRYALPGGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPH--------------SPVLIGSYN 211 (370)
T ss_pred cEEEEECCCCCCceeeeeeccCCCCceeEEE---ecCeEEEEEeCCCeEEEEccCCC--------------CCeEEEEEe
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
..-..-..++.+++.+++-.+..+.+.+....... ...=.-....+.++.--+-.+++...
T Consensus 212 ~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp-------------------~~~gsyet~~p~~~s~v~Vs~~~~Yv 272 (370)
T COG5276 212 TGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSP-------------------TVFGSYETSNPVSISTVPVSGEYAYV 272 (370)
T ss_pred cCCceEEEEecCCeeEEEEcccceEEEecCCCCCc-------------------eEeeccccCCcccccceecccceeee
Q ss_pred EeCCCcEEEEeCCCC---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE
Q 039790 395 ASLDGTVKIWDDRKS---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC 471 (1395)
Q Consensus 395 gs~Dg~IrIWDl~sg---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~ 471 (1395)
...+..+.+-|+.+. .....+..... .-..+..+ +.++..+- .+ +..+-|.... +.
T Consensus 273 adga~gl~~idisnp~spfl~ss~~t~g~-~a~gi~ay------~~y~yiad-kn-~g~vV~~s~~------------s~ 331 (370)
T COG5276 273 ADGAKGLPIIDISNPPSPFLSSSLDTAGY-QAAGIRAY------GNYNYIAD-KN-TGAVVDASPP------------SM 331 (370)
T ss_pred eccccCceeEeccCCCCCchhccccCCCc-cccceEEe------cCeeEecc-CC-ceEEEeCCCh------------hh
Q ss_pred EEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 472 TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 472 l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.....+....... +..+-+.+++.+...++.+.||+.
T Consensus 332 m~~~~g~~ti~~s---------~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 332 MDKRPGRPTIGQS---------CDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cccccCcceEeee---------cceEEEeeEEEEeecCCCEEEEEe
No 500
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=54.12 E-value=76 Score=33.93 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred EEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC---------------------
Q 039790 319 RVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG--------------------- 377 (1395)
Q Consensus 319 ~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~--------------------- 377 (1395)
++.|+.|| .++++.++.|.+++.............................+.....
T Consensus 9 ~l~WS~Dg--~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~ 86 (173)
T PF12657_consen 9 ALAWSEDG--QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISSS 86 (173)
T ss_pred CeeECCCC--CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccccc
Q ss_pred CeEEEEEecCC-----CcEEEEEeCCCcEEEE
Q 039790 378 EITELSMCQWL-----TTRLASASLDGTVKIW 404 (1395)
Q Consensus 378 ~V~slafspdg-----~~~LaSgs~Dg~IrIW 404 (1395)
.|..++|||-| .-+|++.+.+|.|.||
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~ 118 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLY 118 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEE
Done!