Query 039790
Match_columns 1395
No_of_seqs 892 out of 4518
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 23:02:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 3E-35 1E-39 375.5 49.3 429 152-613 65-579 (611)
2 1nr0_A Actin interacting prote 100.0 1.9E-34 6.5E-39 368.1 44.5 288 152-521 24-357 (611)
3 1vyh_C Platelet-activating fac 100.0 1.6E-34 5.5E-39 350.4 38.0 276 152-517 114-409 (410)
4 1vyh_C Platelet-activating fac 100.0 4.7E-34 1.6E-38 346.3 39.5 285 209-563 101-409 (410)
5 2ymu_A WD-40 repeat protein; u 100.0 8.7E-33 3E-37 348.3 51.7 334 205-615 210-550 (577)
6 2ymu_A WD-40 repeat protein; u 100.0 4.6E-33 1.6E-37 350.8 48.5 369 152-600 186-577 (577)
7 3ow8_A WD repeat-containing pr 100.0 1.4E-33 4.9E-38 330.6 38.6 272 158-518 48-320 (321)
8 2ynn_A Coatomer subunit beta'; 100.0 3.7E-33 1.3E-37 323.9 41.2 257 207-521 4-261 (304)
9 3ow8_A WD repeat-containing pr 100.0 1.7E-33 5.7E-38 330.0 38.6 250 208-520 24-280 (321)
10 2vxg_A LD41624, GE-1, CG6181-P 100.0 5E-36 1.7E-40 298.8 10.6 138 1257-1395 2-139 (139)
11 4gqb_B Methylosome protein 50; 100.0 3.1E-33 1E-37 331.3 35.7 288 152-521 36-333 (344)
12 1got_B GT-beta; complex (GTP-b 100.0 2.4E-32 8.2E-37 322.3 42.0 257 206-520 45-302 (340)
13 1got_B GT-beta; complex (GTP-b 100.0 1.8E-32 6.1E-37 323.4 39.8 274 152-516 61-340 (340)
14 2ynn_A Coatomer subunit beta'; 100.0 7E-32 2.4E-36 313.1 39.5 278 152-519 19-302 (304)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-31 3.6E-36 317.6 41.3 269 207-521 6-285 (345)
16 3iz6_a 40S ribosomal protein R 100.0 1.7E-32 5.8E-37 328.9 32.8 267 207-521 57-331 (380)
17 3iz6_a 40S ribosomal protein R 100.0 1.4E-32 4.7E-37 329.7 31.6 281 152-520 72-376 (380)
18 3frx_A Guanine nucleotide-bind 100.0 1.5E-31 5E-36 312.8 39.5 288 152-520 23-318 (319)
19 2pbi_B Guanine nucleotide-bind 100.0 1.6E-31 5.5E-36 317.4 40.0 262 206-521 54-317 (354)
20 3frx_A Guanine nucleotide-bind 100.0 1.6E-31 5.5E-36 312.4 39.4 248 207-519 8-267 (319)
21 4ery_A WD repeat-containing pr 100.0 4.6E-31 1.6E-35 306.2 42.5 291 207-564 14-311 (312)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-31 3.5E-36 317.7 37.2 295 152-521 22-337 (345)
23 2pbi_B Guanine nucleotide-bind 100.0 2.3E-31 7.8E-36 316.1 39.2 275 152-516 70-354 (354)
24 4g56_B MGC81050 protein; prote 100.0 5.8E-32 2E-36 321.7 33.2 249 209-519 87-343 (357)
25 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-31 1.5E-35 363.9 44.1 396 152-615 621-1128(1249)
26 2xzm_R RACK1; ribosome, transl 100.0 5.7E-31 1.9E-35 310.8 36.9 290 157-520 38-341 (343)
27 4gqb_B Methylosome protein 50; 100.0 2.7E-31 9.4E-36 314.5 33.9 285 214-567 28-333 (344)
28 4ery_A WD repeat-containing pr 100.0 2.7E-30 9.2E-35 299.7 41.1 278 152-518 29-311 (312)
29 4aow_A Guanine nucleotide-bind 100.0 3.1E-30 1.1E-34 300.9 40.1 251 207-520 29-287 (340)
30 2hes_X YDR267CP; beta-propelle 100.0 1.1E-30 3.6E-35 307.1 36.1 267 207-520 5-281 (330)
31 2xzm_R RACK1; ribosome, transl 100.0 2.7E-30 9.1E-35 305.0 39.1 253 207-521 12-287 (343)
32 1erj_A Transcriptional repress 100.0 2.2E-30 7.6E-35 311.9 38.7 299 151-519 69-389 (393)
33 4g56_B MGC81050 protein; prote 100.0 5.1E-31 1.7E-35 313.6 32.7 250 212-520 38-302 (357)
34 2pm9_A Protein WEB1, protein t 100.0 3.1E-31 1.1E-35 318.9 30.9 292 152-522 18-340 (416)
35 2hes_X YDR267CP; beta-propelle 100.0 1.2E-30 4.1E-35 306.6 34.5 282 158-519 24-328 (330)
36 1r5m_A SIR4-interacting protei 100.0 4.9E-30 1.7E-34 308.0 39.5 296 151-521 50-363 (425)
37 1erj_A Transcriptional repress 100.0 4.1E-30 1.4E-34 309.6 38.4 256 214-521 62-343 (393)
38 2pm7_B Protein transport prote 100.0 3.4E-30 1.2E-34 297.9 34.4 257 209-519 2-285 (297)
39 2oaj_A Protein SNI1; WD40 repe 100.0 4.1E-30 1.4E-34 341.7 39.4 254 152-454 23-310 (902)
40 3mkq_A Coatomer beta'-subunit; 100.0 2.9E-29 1E-33 329.6 44.3 366 152-614 19-471 (814)
41 3zwl_B Eukaryotic translation 100.0 6.9E-29 2.4E-33 291.9 41.5 259 208-520 24-305 (369)
42 4aow_A Guanine nucleotide-bind 100.0 6.1E-29 2.1E-33 290.0 39.9 292 152-521 44-339 (340)
43 1r5m_A SIR4-interacting protei 100.0 1.3E-29 4.4E-34 304.3 35.0 315 213-602 42-424 (425)
44 3dm0_A Maltose-binding peripla 100.0 1.7E-29 5.8E-34 327.2 38.3 288 152-518 388-692 (694)
45 3zwl_B Eukaryotic translation 100.0 5.5E-29 1.9E-33 292.8 39.1 289 152-520 38-347 (369)
46 1pgu_A Actin interacting prote 100.0 3.5E-29 1.2E-33 316.8 40.1 405 152-604 70-615 (615)
47 4gga_A P55CDC, cell division c 100.0 5.6E-29 1.9E-33 302.2 39.3 282 152-520 111-396 (420)
48 2oaj_A Protein SNI1; WD40 repe 100.0 5.8E-30 2E-34 340.2 32.6 393 152-614 64-675 (902)
49 3v7d_B Cell division control p 100.0 1.4E-28 4.9E-33 301.5 42.5 335 208-599 113-459 (464)
50 3sfz_A APAF-1, apoptotic pepti 100.0 7.1E-29 2.4E-33 341.9 43.7 344 208-615 607-1086(1249)
51 1sq9_A Antiviral protein SKI8; 100.0 2.4E-29 8.1E-34 300.8 33.8 288 159-520 27-396 (397)
52 1k8k_C P40, ARP2/3 complex 41 100.0 4.8E-29 1.7E-33 294.7 35.6 250 212-519 4-274 (372)
53 3vl1_A 26S proteasome regulato 100.0 2.4E-29 8.2E-34 303.4 33.5 295 152-521 62-367 (420)
54 1pgu_A Actin interacting prote 100.0 1.2E-28 4.2E-33 311.8 41.2 354 152-606 24-405 (615)
55 1sq9_A Antiviral protein SKI8; 100.0 2.9E-29 1E-33 300.0 33.2 258 208-520 8-323 (397)
56 4e54_B DNA damage-binding prot 100.0 1.2E-29 4.1E-34 309.7 30.2 259 209-521 112-389 (435)
57 3ei3_B DNA damage-binding prot 100.0 5.7E-29 1.9E-33 297.1 34.5 259 207-521 64-341 (383)
58 3dm0_A Maltose-binding peripla 100.0 9.6E-29 3.3E-33 320.1 39.4 252 208-520 374-633 (694)
59 1gxr_A ESG1, transducin-like e 100.0 3.2E-28 1.1E-32 282.9 39.7 281 211-563 46-335 (337)
60 3gre_A Serine/threonine-protei 100.0 9E-29 3.1E-33 300.8 34.1 275 207-521 53-361 (437)
61 4aez_A CDC20, WD repeat-contai 100.0 3.8E-28 1.3E-32 292.8 38.7 274 157-521 102-382 (401)
62 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-28 9.3E-33 288.2 36.7 315 151-520 13-362 (372)
63 3v7d_B Cell division control p 100.0 6.6E-28 2.3E-32 295.6 41.0 285 154-521 128-423 (464)
64 3vl1_A 26S proteasome regulato 100.0 1E-28 3.5E-33 297.9 33.1 318 219-602 59-418 (420)
65 3ei3_B DNA damage-binding prot 100.0 3.2E-28 1.1E-32 290.6 36.5 281 152-519 79-382 (383)
66 3bg1_A Protein SEC13 homolog; 100.0 2.1E-29 7.1E-34 294.1 25.6 257 211-519 8-293 (316)
67 3odt_A Protein DOA1; ubiquitin 100.0 6E-28 2.1E-32 277.7 37.3 286 207-568 9-299 (313)
68 3odt_A Protein DOA1; ubiquitin 100.0 6.1E-28 2.1E-32 277.7 36.8 266 156-521 27-298 (313)
69 2pm9_A Protein WEB1, protein t 100.0 1.1E-29 3.8E-34 305.4 23.0 304 152-520 73-415 (416)
70 4e54_B DNA damage-binding prot 100.0 2.7E-29 9.1E-34 306.6 26.3 285 152-521 125-432 (435)
71 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-27 5.5E-32 291.1 41.8 317 207-603 109-442 (445)
72 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.8E-27 9.4E-32 289.0 43.7 303 154-565 125-442 (445)
73 1gxr_A ESG1, transducin-like e 100.0 2.8E-27 9.6E-32 274.8 41.3 276 151-518 56-336 (337)
74 3mkq_A Coatomer beta'-subunit; 100.0 9E-28 3.1E-32 315.5 41.3 254 207-521 4-261 (814)
75 3jrp_A Fusion protein of prote 100.0 4.3E-28 1.5E-32 286.6 33.9 258 207-520 2-288 (379)
76 2j04_B YDR362CP, TAU91; beta p 100.0 5.5E-29 1.9E-33 310.7 27.1 316 225-602 170-516 (524)
77 3k26_A Polycomb protein EED; W 100.0 1.4E-28 4.8E-33 289.3 27.1 263 215-518 68-365 (366)
78 3dwl_C Actin-related protein 2 100.0 7.6E-29 2.6E-33 294.8 24.9 257 151-456 16-281 (377)
79 3dwl_C Actin-related protein 2 100.0 2.2E-29 7.4E-34 299.5 19.8 248 212-518 7-280 (377)
80 4h5i_A Guanine nucleotide-exch 100.0 1.4E-28 4.9E-33 293.5 26.8 245 211-520 68-344 (365)
81 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-27 4.8E-32 277.1 33.7 284 210-521 5-339 (351)
82 3k26_A Polycomb protein EED; W 100.0 1.1E-27 3.9E-32 281.6 32.8 298 211-565 13-366 (366)
83 4a11_B DNA excision repair pro 100.0 2.5E-27 8.6E-32 283.0 36.1 332 207-603 34-405 (408)
84 4ggc_A P55CDC, cell division c 100.0 8.4E-27 2.9E-31 269.1 39.1 281 152-519 31-315 (318)
85 4aez_A CDC20, WD repeat-contai 100.0 3.9E-27 1.3E-31 284.0 36.4 243 214-520 89-337 (401)
86 2j04_B YDR362CP, TAU91; beta p 100.0 3.3E-28 1.1E-32 303.7 27.9 259 210-519 201-517 (524)
87 1p22_A F-BOX/WD-repeat protein 100.0 4.1E-27 1.4E-31 287.0 35.0 279 152-521 137-416 (435)
88 3dw8_B Serine/threonine-protei 100.0 1.9E-27 6.5E-32 289.0 30.8 275 215-521 27-375 (447)
89 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-26 3.7E-31 283.3 37.4 239 211-521 128-367 (435)
90 2pm7_B Protein transport prote 100.0 4.2E-27 1.4E-31 271.9 32.0 245 152-457 15-286 (297)
91 3i2n_A WD repeat-containing pr 100.0 3.6E-27 1.2E-31 276.6 31.7 260 214-520 63-354 (357)
92 3i2n_A WD repeat-containing pr 100.0 1.9E-27 6.6E-32 278.9 28.9 250 210-521 12-293 (357)
93 4a11_B DNA excision repair pro 100.0 1.5E-26 5.2E-31 276.3 36.4 308 152-521 49-367 (408)
94 4gga_A P55CDC, cell division c 100.0 9.7E-26 3.3E-30 273.7 39.8 239 217-521 106-355 (420)
95 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-26 5.4E-31 278.4 31.1 273 160-520 49-343 (402)
96 1yfq_A Cell cycle arrest prote 100.0 1.6E-26 5.6E-31 269.9 30.3 274 152-516 17-321 (342)
97 3gre_A Serine/threonine-protei 100.0 8.2E-27 2.8E-31 283.5 28.2 288 152-516 69-437 (437)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 2.9E-26 1E-30 276.1 32.6 292 220-569 38-346 (402)
99 3dw8_B Serine/threonine-protei 100.0 2.7E-26 9.4E-31 278.8 32.6 296 152-517 34-444 (447)
100 3f3f_A Nucleoporin SEH1; struc 99.9 2.4E-26 8.1E-31 266.8 29.7 267 152-478 17-350 (351)
101 2xyi_A Probable histone-bindin 99.9 2.5E-26 8.4E-31 280.0 30.3 270 210-519 122-410 (430)
102 3bg1_A Protein SEC13 homolog; 99.9 5.8E-27 2E-31 273.4 23.1 256 152-477 19-305 (316)
103 3mmy_A MRNA export factor; mRN 99.9 4.3E-26 1.5E-30 267.9 28.8 281 152-519 45-346 (368)
104 3jro_A Fusion protein of prote 99.9 2.5E-26 8.7E-31 300.2 28.0 257 210-520 3-286 (753)
105 4ggc_A P55CDC, cell division c 99.9 1.1E-24 3.6E-29 251.5 38.0 273 218-565 27-315 (318)
106 4h5i_A Guanine nucleotide-exch 99.9 9.3E-26 3.2E-30 269.1 29.5 208 213-457 130-344 (365)
107 4gq1_A NUP37; propeller, trans 99.9 3E-26 1E-30 276.0 25.2 319 159-518 31-388 (393)
108 1yfq_A Cell cycle arrest prote 99.9 4.2E-25 1.4E-29 258.0 32.6 266 211-520 6-283 (342)
109 3jrp_A Fusion protein of prote 99.9 1.2E-24 4E-29 257.1 31.6 245 152-457 17-288 (379)
110 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3E-24 1E-28 262.9 34.7 275 217-546 5-363 (450)
111 2j04_A TAU60, YPL007P, hypothe 99.9 4.5E-25 1.5E-29 270.0 26.4 311 150-507 19-349 (588)
112 3vu4_A KMHSV2; beta-propeller 99.9 2.8E-24 9.6E-29 255.1 32.0 242 207-521 10-273 (355)
113 1l0q_A Surface layer protein; 99.9 4.6E-23 1.6E-27 246.2 42.6 267 160-521 4-277 (391)
114 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.5E-24 2.6E-28 259.4 34.1 252 212-519 98-391 (450)
115 3mmy_A MRNA export factor; mRN 99.9 8.2E-24 2.8E-28 248.4 30.7 262 205-520 28-305 (368)
116 2j04_A TAU60, YPL007P, hypothe 99.9 1.3E-24 4.3E-29 266.1 22.0 301 176-585 23-342 (588)
117 1l0q_A Surface layer protein; 99.9 3.2E-22 1.1E-26 238.8 40.8 267 229-569 3-279 (391)
118 3lrv_A PRE-mRNA-splicing facto 99.9 7.8E-24 2.7E-28 249.5 25.1 265 155-518 45-332 (343)
119 2w18_A PALB2, fancn, partner a 99.9 5.6E-23 1.9E-27 237.5 29.9 257 159-517 55-355 (356)
120 2xyi_A Probable histone-bindin 99.9 3.6E-23 1.2E-27 252.1 30.0 252 152-457 134-411 (430)
121 3vu4_A KMHSV2; beta-propeller 99.9 7.4E-23 2.5E-27 242.9 31.6 261 218-521 60-338 (355)
122 3bws_A Protein LP49; two-domai 99.9 2.7E-22 9.3E-27 242.9 36.7 279 152-518 128-431 (433)
123 3lrv_A PRE-mRNA-splicing facto 99.9 3.6E-23 1.2E-27 243.8 27.1 242 223-521 43-294 (343)
124 3bws_A Protein LP49; two-domai 99.9 4.8E-22 1.6E-26 240.8 34.8 248 208-521 115-392 (433)
125 3jro_A Fusion protein of prote 99.9 3.6E-23 1.2E-27 270.4 26.1 245 152-457 15-286 (753)
126 4gq1_A NUP37; propeller, trans 99.9 1.4E-22 4.9E-27 243.9 24.5 269 155-455 98-388 (393)
127 1nir_A Nitrite reductase; hemo 99.9 2.2E-20 7.5E-25 234.5 40.3 286 155-521 146-460 (543)
128 2w18_A PALB2, fancn, partner a 99.9 2.4E-21 8.2E-26 224.0 25.6 211 152-454 117-355 (356)
129 1nir_A Nitrite reductase; hemo 99.9 5.2E-20 1.8E-24 231.1 35.7 326 223-611 144-522 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.2E-20 1.8E-24 223.4 31.7 225 228-519 143-387 (415)
131 3u4y_A Uncharacterized protein 99.8 2.5E-18 8.5E-23 200.1 35.2 280 159-519 11-304 (331)
132 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.6E-18 5.6E-23 210.2 32.7 224 209-500 171-409 (415)
133 1ri6_A Putative isomerase YBHE 99.8 7.2E-18 2.4E-22 196.1 35.9 255 215-519 36-308 (343)
134 1k32_A Tricorn protease; prote 99.8 1.6E-18 5.3E-23 234.8 32.3 240 210-518 239-501 (1045)
135 2ojh_A Uncharacterized protein 99.8 2.9E-18 9.8E-23 194.1 27.8 237 211-510 36-293 (297)
136 2ecf_A Dipeptidyl peptidase IV 99.8 3.5E-18 1.2E-22 222.3 31.5 297 151-519 41-413 (741)
137 3vgz_A Uncharacterized protein 99.8 1.1E-16 3.7E-21 187.4 36.5 241 217-521 41-305 (353)
138 1xfd_A DIP, dipeptidyl aminope 99.8 1.1E-17 3.6E-22 217.0 29.4 306 147-520 17-394 (723)
139 2ecf_A Dipeptidyl peptidase IV 99.8 3.3E-17 1.1E-21 213.0 32.6 327 216-602 36-458 (741)
140 3u4y_A Uncharacterized protein 99.8 7.2E-17 2.5E-21 187.7 29.7 235 223-521 4-254 (331)
141 1xfd_A DIP, dipeptidyl aminope 99.8 2.7E-17 9.2E-22 213.2 28.3 241 218-516 18-341 (723)
142 2z3z_A Dipeptidyl aminopeptida 99.8 6.3E-17 2.1E-21 209.3 31.6 255 217-521 82-393 (706)
143 1ri6_A Putative isomerase YBHE 99.8 2.5E-16 8.6E-21 183.0 33.3 287 230-569 7-314 (343)
144 2ojh_A Uncharacterized protein 99.8 3.6E-17 1.2E-21 185.0 24.9 224 234-521 18-260 (297)
145 3hfq_A Uncharacterized protein 99.8 2.6E-16 8.9E-21 184.8 32.4 252 215-519 38-317 (347)
146 1pby_B Quinohemoprotein amine 99.8 1.8E-16 6E-21 183.8 30.1 265 160-521 3-312 (337)
147 2z3z_A Dipeptidyl aminopeptida 99.7 1.9E-16 6.5E-21 204.8 31.5 330 219-605 28-437 (706)
148 3vgz_A Uncharacterized protein 99.7 1E-15 3.5E-20 179.1 34.3 230 217-510 89-335 (353)
149 1k32_A Tricorn protease; prote 99.7 4.5E-16 1.5E-20 210.7 33.5 241 209-520 196-462 (1045)
150 2oit_A Nucleoporin 214KDA; NH2 99.7 1.8E-16 6E-21 193.5 23.1 210 217-457 37-279 (434)
151 3scy_A Hypothetical bacterial 99.7 2E-14 6.9E-19 169.8 38.1 264 215-519 48-337 (361)
152 1jmx_B Amine dehydrogenase; ox 99.7 1.5E-15 5.1E-20 177.1 27.7 236 221-520 4-326 (349)
153 3o4h_A Acylamino-acid-releasin 99.7 3.4E-16 1.2E-20 197.9 23.7 240 216-517 21-274 (582)
154 3hfq_A Uncharacterized protein 99.7 1.1E-14 3.8E-19 170.8 34.9 287 230-569 4-323 (347)
155 1pby_B Quinohemoprotein amine 99.7 1.8E-15 6.2E-20 175.3 27.4 228 229-520 2-270 (337)
156 1z68_A Fibroblast activation p 99.7 9.7E-16 3.3E-20 198.7 26.3 301 151-519 20-391 (719)
157 1z68_A Fibroblast activation p 99.7 5.8E-16 2E-20 200.8 20.8 333 221-611 20-451 (719)
158 2oit_A Nucleoporin 214KDA; NH2 99.7 4E-15 1.4E-19 181.5 26.8 200 214-455 90-332 (434)
159 3o4h_A Acylamino-acid-releasin 99.7 3.3E-15 1.1E-19 188.8 24.4 230 211-517 58-313 (582)
160 3pe7_A Oligogalacturonate lyas 99.6 1.3E-14 4.4E-19 172.6 25.7 256 207-520 21-330 (388)
161 1jof_A Carboxy-CIS,CIS-muconat 99.6 3.7E-14 1.3E-18 168.4 29.0 247 217-519 40-341 (365)
162 1jmx_B Amine dehydrogenase; ox 99.6 3.4E-14 1.2E-18 165.6 27.1 258 155-478 8-335 (349)
163 4a5s_A Dipeptidyl peptidase 4 99.6 6.5E-14 2.2E-18 182.5 32.1 256 218-521 18-355 (740)
164 3scy_A Hypothetical bacterial 99.6 1.3E-12 4.4E-17 154.2 36.1 310 228-581 13-359 (361)
165 1q7f_A NHL, brain tumor CG1071 99.6 8.8E-13 3E-17 150.3 32.7 240 214-519 27-280 (286)
166 4a5s_A Dipeptidyl peptidase 4 99.6 4.5E-13 1.5E-17 174.6 31.0 265 150-457 20-354 (740)
167 3pe7_A Oligogalacturonate lyas 99.6 4E-13 1.4E-17 159.7 27.7 251 214-518 78-381 (388)
168 3fvz_A Peptidyl-glycine alpha- 99.6 1.8E-12 6.2E-17 151.6 32.6 248 216-519 23-322 (329)
169 3c5m_A Oligogalacturonate lyas 99.5 2.8E-13 9.6E-18 161.0 22.9 238 218-521 37-331 (396)
170 3azo_A Aminopeptidase; POP fam 99.5 6.2E-13 2.1E-17 170.5 26.7 252 211-518 18-322 (662)
171 1jof_A Carboxy-CIS,CIS-muconat 99.5 3.1E-12 1.1E-16 151.8 30.6 241 230-518 4-290 (365)
172 3e5z_A Putative gluconolactona 99.5 6.6E-12 2.3E-16 144.0 31.5 245 207-519 18-286 (296)
173 3azo_A Aminopeptidase; POP fam 99.5 2.2E-12 7.4E-17 165.4 27.2 238 221-520 81-370 (662)
174 3c5m_A Oligogalacturonate lyas 99.5 1.3E-12 4.3E-17 155.3 21.4 241 221-520 85-385 (396)
175 2dg1_A DRP35, lactonase; beta 99.5 4.1E-11 1.4E-15 139.4 32.8 243 209-509 37-300 (333)
176 2xdw_A Prolyl endopeptidase; a 99.4 1.1E-11 3.9E-16 160.5 29.8 256 215-521 123-416 (710)
177 2oiz_A Aromatic amine dehydrog 99.4 3.4E-11 1.2E-15 143.0 27.0 240 221-520 54-335 (361)
178 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.2E-10 4.3E-15 133.7 30.1 240 213-519 14-299 (314)
179 1qks_A Cytochrome CD1 nitrite 99.4 2.4E-09 8.1E-14 134.4 42.9 251 217-520 197-478 (567)
180 2gop_A Trilobed protease; beta 99.4 4.4E-11 1.5E-15 139.8 25.5 222 217-519 15-291 (347)
181 1rwi_B Serine/threonine-protei 99.4 4.5E-11 1.5E-15 134.4 23.9 238 218-520 25-265 (270)
182 2gop_A Trilobed protease; beta 99.4 7.3E-11 2.5E-15 137.9 26.3 221 217-518 59-330 (347)
183 2bkl_A Prolyl endopeptidase; m 99.4 1.8E-11 6.3E-16 158.2 23.2 246 214-521 118-399 (695)
184 3fvz_A Peptidyl-glycine alpha- 99.4 1.4E-10 4.8E-15 135.5 28.6 202 214-456 88-322 (329)
185 1q7f_A NHL, brain tumor CG1071 99.4 2.3E-10 7.8E-15 130.2 29.2 197 215-457 75-281 (286)
186 1qks_A Cytochrome CD1 nitrite 99.3 1.6E-09 5.4E-14 135.9 38.1 325 226-611 165-546 (567)
187 2z2n_A Virginiamycin B lyase; 99.3 4.9E-09 1.7E-13 118.9 35.7 238 214-517 12-253 (299)
188 2oiz_A Aromatic amine dehydrog 99.3 1.2E-09 4E-14 129.7 31.3 281 227-569 14-340 (361)
189 2dg1_A DRP35, lactonase; beta 99.3 1.4E-10 4.8E-15 134.9 21.9 243 218-518 7-262 (333)
190 2xdw_A Prolyl endopeptidase; a 99.3 9E-10 3.1E-14 142.7 31.2 200 219-457 173-415 (710)
191 3no2_A Uncharacterized protein 99.3 1.1E-09 3.8E-14 124.9 28.3 225 227-507 4-231 (276)
192 3hrp_A Uncharacterized protein 99.2 2.9E-09 9.9E-14 128.6 30.6 253 217-518 131-409 (409)
193 2bkl_A Prolyl endopeptidase; m 99.2 5.8E-10 2E-14 144.1 26.1 233 224-518 75-348 (695)
194 3dsm_A Uncharacterized protein 99.2 2.8E-09 9.7E-14 124.5 28.2 237 217-521 44-303 (328)
195 2z2n_A Virginiamycin B lyase; 99.2 2.9E-08 1E-12 112.5 35.0 238 215-520 55-296 (299)
196 1yr2_A Prolyl oligopeptidase; 99.2 9.8E-10 3.3E-14 143.1 25.1 246 215-521 161-443 (741)
197 3e5z_A Putative gluconolactona 99.1 3.3E-09 1.1E-13 121.4 24.6 204 209-457 61-287 (296)
198 3dsm_A Uncharacterized protein 99.1 1.7E-08 5.8E-13 117.9 30.1 218 236-522 15-256 (328)
199 1rwi_B Serine/threonine-protei 99.1 5.7E-09 2E-13 117.1 24.1 197 217-457 67-265 (270)
200 3iuj_A Prolyl endopeptidase; h 99.1 3E-09 1E-13 137.5 24.4 246 214-521 126-407 (693)
201 3g4e_A Regucalcin; six bladed 99.1 4.2E-08 1.4E-12 112.7 31.2 229 214-507 10-260 (297)
202 1yr2_A Prolyl oligopeptidase; 99.1 7.9E-09 2.7E-13 134.5 28.2 279 224-570 114-446 (741)
203 2ghs_A AGR_C_1268P; regucalcin 99.1 6.2E-08 2.1E-12 113.0 32.6 223 218-507 50-290 (326)
204 2mad_H Methylamine dehydrogena 99.1 2.8E-07 9.6E-12 109.7 38.5 239 221-521 70-352 (373)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 2.1E-08 7.2E-13 115.0 27.4 204 215-457 69-300 (314)
206 2qc5_A Streptogramin B lactona 99.0 1.5E-07 5E-12 106.7 31.7 237 215-517 18-258 (300)
207 2qc5_A Streptogramin B lactona 99.0 4.5E-07 1.5E-11 102.7 35.5 235 215-517 60-298 (300)
208 3no2_A Uncharacterized protein 99.0 4E-08 1.4E-12 112.0 26.5 216 157-442 4-230 (276)
209 3dr2_A Exported gluconolactona 99.0 1.1E-07 3.9E-12 109.4 27.1 239 209-517 37-304 (305)
210 1xip_A Nucleoporin NUP159; bet 98.9 2E-08 6.9E-13 119.3 19.7 172 218-443 39-232 (388)
211 3sjl_D Methylamine dehydrogena 98.9 1.9E-07 6.5E-12 110.6 27.7 239 221-521 82-365 (386)
212 2mad_H Methylamine dehydrogena 98.9 1.7E-06 5.9E-11 102.8 35.7 282 224-569 28-354 (373)
213 3hrp_A Uncharacterized protein 98.9 9.1E-07 3.1E-11 106.6 31.4 209 258-520 131-355 (409)
214 3g4e_A Regucalcin; six bladed 98.8 7.1E-07 2.4E-11 102.3 27.4 192 216-443 53-260 (297)
215 2qe8_A Uncharacterized protein 98.8 3.5E-07 1.2E-11 107.3 24.3 261 217-516 17-318 (343)
216 3sjl_D Methylamine dehydrogena 98.7 5.8E-06 2E-10 97.9 31.7 220 219-480 139-375 (386)
217 3c75_H MADH, methylamine dehyd 98.7 1.5E-06 5.2E-11 104.6 25.6 239 221-521 122-404 (426)
218 3c75_H MADH, methylamine dehyd 98.7 4.9E-06 1.7E-10 100.1 28.1 283 226-569 82-406 (426)
219 3dr2_A Exported gluconolactona 98.7 8.7E-07 3E-11 101.9 20.9 192 210-447 79-298 (305)
220 2ghs_A AGR_C_1268P; regucalcin 98.6 5.9E-06 2E-10 96.1 27.8 188 216-443 89-290 (326)
221 3iuj_A Prolyl endopeptidase; h 98.6 8E-07 2.8E-11 114.6 22.2 195 220-457 178-406 (693)
222 1xip_A Nucleoporin NUP159; bet 98.6 7.4E-07 2.5E-11 105.9 19.6 192 259-507 39-232 (388)
223 2hz6_A Endoplasmic reticulum t 98.5 3.6E-08 1.2E-12 117.2 5.1 182 227-457 8-193 (369)
224 1yiq_A Quinohemoprotein alcoho 98.5 7.7E-06 2.6E-10 105.2 27.1 236 227-521 120-507 (689)
225 3q7m_A Lipoprotein YFGL, BAMB; 98.5 4.3E-05 1.5E-09 90.2 31.7 261 227-569 52-341 (376)
226 2qe8_A Uncharacterized protein 98.5 5.2E-06 1.8E-10 97.3 22.9 222 214-452 64-317 (343)
227 3q7m_A Lipoprotein YFGL, BAMB; 98.5 9.5E-05 3.3E-09 87.2 33.8 235 226-521 101-339 (376)
228 1npe_A Nidogen, entactin; glyc 98.5 8.3E-05 2.8E-09 83.4 31.2 229 228-521 1-240 (267)
229 3hxj_A Pyrrolo-quinoline quino 98.5 2E-05 6.9E-10 90.6 26.6 218 228-519 107-324 (330)
230 1npe_A Nidogen, entactin; glyc 98.5 0.00024 8.3E-09 79.5 34.3 206 217-477 36-247 (267)
231 2ece_A 462AA long hypothetical 98.4 3.9E-05 1.3E-09 91.5 27.3 239 223-507 88-399 (462)
232 1kb0_A Quinohemoprotein alcoho 98.4 3.2E-05 1.1E-09 99.2 28.6 237 227-521 127-509 (677)
233 1mda_H Methylamine dehydrogena 98.4 7.5E-06 2.6E-10 96.8 20.0 81 382-480 269-358 (368)
234 2hz6_A Endoplasmic reticulum t 98.4 2E-07 6.7E-12 110.8 5.7 182 269-521 8-194 (369)
235 1mda_H Methylamine dehydrogena 98.3 2.3E-05 7.9E-10 92.6 22.5 240 239-521 47-348 (368)
236 1yiq_A Quinohemoprotein alcoho 98.3 4.2E-05 1.4E-09 98.4 26.6 206 228-457 70-339 (689)
237 1kb0_A Quinohemoprotein alcoho 98.2 0.00013 4.6E-09 93.5 28.2 81 399-506 457-537 (677)
238 2iwa_A Glutamine cyclotransfer 98.2 0.00016 5.5E-09 81.2 25.1 208 207-457 10-238 (266)
239 1fwx_A Nitrous oxide reductase 98.2 4.1E-05 1.4E-09 94.4 21.1 251 226-508 99-407 (595)
240 2fp8_A Strictosidine synthase; 98.2 0.00013 4.5E-09 84.2 24.5 241 217-519 19-313 (322)
241 3hxj_A Pyrrolo-quinoline quino 98.2 6.1E-05 2.1E-09 86.5 20.8 221 219-517 62-282 (330)
242 3v65_B Low-density lipoprotein 98.2 0.0013 4.4E-08 78.3 32.5 239 220-521 80-320 (386)
243 3v64_C Agrin; beta propeller, 98.1 0.0021 7.1E-08 75.4 32.8 241 218-521 35-277 (349)
244 4a2l_A BT_4663, two-component 98.1 0.0048 1.6E-07 80.6 39.7 322 216-605 214-573 (795)
245 4a2l_A BT_4663, two-component 98.1 0.0038 1.3E-07 81.6 37.2 325 219-606 175-529 (795)
246 1kv9_A Type II quinohemoprotei 98.0 0.0003 1E-08 90.1 24.8 105 391-521 316-490 (668)
247 3nol_A Glutamine cyclotransfer 98.0 0.00049 1.7E-08 76.5 23.1 192 208-443 33-243 (262)
248 1ijq_A LDL receptor, low-densi 97.9 0.011 3.7E-07 68.1 33.8 235 230-521 3-240 (316)
249 1kv9_A Type II quinohemoprotei 97.9 0.00057 1.9E-08 87.5 24.8 207 228-457 66-334 (668)
250 2ece_A 462AA long hypothetical 97.9 0.0009 3.1E-08 79.9 23.9 203 219-443 140-399 (462)
251 2fp8_A Strictosidine synthase; 97.9 0.003 1E-07 72.7 27.6 197 217-457 80-314 (322)
252 2p4o_A Hypothetical protein; p 97.8 0.002 6.9E-08 73.7 25.1 204 217-455 32-241 (306)
253 3mbr_X Glutamine cyclotransfer 97.8 0.0021 7E-08 70.9 23.7 190 207-443 10-222 (243)
254 2iwa_A Glutamine cyclotransfer 97.8 0.0023 7.9E-08 71.8 23.6 205 259-520 22-238 (266)
255 2xe4_A Oligopeptidase B; hydro 97.8 0.00092 3.2E-08 86.8 23.4 198 218-453 175-395 (751)
256 1k3i_A Galactose oxidase precu 97.8 0.00093 3.2E-08 85.4 22.9 70 221-291 190-276 (656)
257 3nok_A Glutaminyl cyclase; bet 97.8 0.0029 9.8E-08 70.4 23.3 181 217-443 55-253 (268)
258 3p5b_L Low density lipoprotein 97.7 0.027 9.1E-07 67.2 33.5 237 229-521 84-322 (400)
259 3v65_B Low-density lipoprotein 97.7 0.015 5E-07 69.1 30.4 201 215-457 114-319 (386)
260 1ijq_A LDL receptor, low-densi 97.7 0.05 1.7E-06 62.5 33.9 199 216-457 29-239 (316)
261 3v64_C Agrin; beta propeller, 97.7 0.024 8.4E-07 66.2 31.2 199 216-457 72-276 (349)
262 3nol_A Glutamine cyclotransfer 97.7 0.0041 1.4E-07 69.1 22.8 195 255-508 38-244 (262)
263 2ad6_A Methanol dehydrogenase 97.7 0.0045 1.5E-07 77.6 26.2 62 227-291 114-187 (571)
264 2ad6_A Methanol dehydrogenase 97.6 0.044 1.5E-06 68.6 34.8 189 400-611 273-502 (571)
265 3v9f_A Two-component system se 97.6 0.03 1E-06 72.8 34.6 322 216-604 257-612 (781)
266 1fwx_A Nitrous oxide reductase 97.6 0.0029 9.8E-08 78.1 22.0 100 400-519 255-361 (595)
267 3v9f_A Two-component system se 97.6 0.035 1.2E-06 72.2 33.7 336 217-605 211-570 (781)
268 3p5b_L Low density lipoprotein 97.6 0.046 1.6E-06 65.1 31.9 202 215-457 110-321 (400)
269 4hw6_A Hypothetical protein, I 97.5 0.019 6.4E-07 69.3 28.4 250 217-518 139-432 (433)
270 3tc9_A Hypothetical hydrolase; 97.5 0.01 3.5E-07 71.5 26.0 252 218-518 138-429 (430)
271 3m0c_C LDL receptor, low-densi 97.5 0.052 1.8E-06 70.3 33.2 236 230-521 397-634 (791)
272 3sov_A LRP-6, low-density lipo 97.5 0.041 1.4E-06 63.5 29.1 230 230-521 6-240 (318)
273 1w6s_A Methanol dehydrogenase 97.5 0.032 1.1E-06 70.0 30.0 58 231-291 124-193 (599)
274 3qqz_A Putative uncharacterize 97.5 0.078 2.7E-06 58.9 29.7 213 212-453 22-250 (255)
275 1w6s_A Methanol dehydrogenase 97.5 0.084 2.9E-06 66.3 33.5 208 381-611 245-511 (599)
276 3mbr_X Glutamine cyclotransfer 97.4 0.026 8.8E-07 62.1 25.1 200 255-513 16-229 (243)
277 3nok_A Glutaminyl cyclase; bet 97.4 0.0065 2.2E-07 67.5 20.2 190 259-508 56-255 (268)
278 3m0c_C LDL receptor, low-densi 97.4 0.051 1.7E-06 70.4 31.7 202 215-457 422-633 (791)
279 3sov_A LRP-6, low-density lipo 97.4 0.075 2.6E-06 61.2 29.9 199 218-457 36-239 (318)
280 1flg_A Protein (quinoprotein e 97.4 0.054 1.9E-06 67.9 30.9 61 228-291 68-138 (582)
281 3qqz_A Putative uncharacterize 97.4 0.083 2.8E-06 58.7 28.3 215 252-516 21-250 (255)
282 3tc9_A Hypothetical hydrolase; 97.3 0.018 6.2E-07 69.4 23.3 158 259-456 138-301 (430)
283 2p4o_A Hypothetical protein; p 97.2 0.043 1.5E-06 62.5 24.9 198 258-518 32-241 (306)
284 1flg_A Protein (quinoprotein e 97.2 0.06 2.1E-06 67.5 28.0 28 391-418 338-365 (582)
285 2xe4_A Oligopeptidase B; hydro 97.2 0.008 2.7E-07 78.0 20.3 157 259-456 175-354 (751)
286 3ei3_A DNA damage-binding prot 97.1 0.28 9.7E-06 66.2 34.3 288 216-569 553-917 (1158)
287 4a0p_A LRP6, LRP-6, low-densit 97.1 0.42 1.4E-05 60.3 34.1 230 229-522 7-240 (628)
288 3amr_A 3-phytase; beta-propell 97.1 0.12 4.3E-06 59.6 26.6 204 227-477 39-273 (355)
289 4hw6_A Hypothetical protein, I 97.0 0.038 1.3E-06 66.7 22.8 209 259-516 140-371 (433)
290 2xbg_A YCF48-like protein; pho 97.0 0.12 3.9E-06 59.7 25.8 234 216-516 79-319 (327)
291 4a0p_A LRP6, LRP-6, low-densit 97.0 1.5 5.3E-05 55.1 45.1 351 205-611 154-557 (628)
292 3kya_A Putative phosphatase; s 96.9 0.25 8.4E-06 60.2 27.9 165 259-455 140-340 (496)
293 2ism_A Putative oxidoreductase 96.8 0.32 1.1E-05 56.7 28.1 106 216-333 30-153 (352)
294 2xbg_A YCF48-like protein; pho 96.8 0.29 9.8E-06 56.4 27.4 193 217-457 36-235 (327)
295 1n7d_A LDL receptor, low-densi 96.7 0.0057 1.9E-07 78.6 12.9 199 217-457 406-615 (699)
296 3a9g_A Putative uncharacterize 96.7 0.7 2.4E-05 53.9 29.1 216 216-456 28-296 (354)
297 1n7d_A LDL receptor, low-densi 96.6 0.0074 2.5E-07 77.5 12.5 183 237-456 385-571 (699)
298 1k3i_A Galactose oxidase precu 96.5 0.27 9.1E-06 62.5 26.1 71 262-344 190-273 (656)
299 3s94_A LRP-6, low-density lipo 96.5 0.52 1.8E-05 59.4 28.3 226 237-522 17-246 (619)
300 3das_A Putative oxidoreductase 96.4 0.61 2.1E-05 54.1 26.1 161 216-394 31-218 (347)
301 3sre_A PON1, serum paraoxonase 96.4 1.2 4.3E-05 51.7 28.4 196 218-454 51-296 (355)
302 3kya_A Putative phosphatase; s 96.3 2.2 7.4E-05 51.9 31.2 271 218-519 140-475 (496)
303 2p9w_A MAL S 1 allergenic prot 96.3 0.16 5.6E-06 58.2 20.1 169 214-409 10-216 (334)
304 2g8s_A Glucose/sorbosone dehyd 96.3 1 3.6E-05 52.3 27.4 121 217-344 18-172 (353)
305 3s94_A LRP-6, low-density lipo 96.2 3.4 0.00012 51.9 33.4 187 230-457 319-511 (619)
306 3amr_A 3-phytase; beta-propell 95.9 0.94 3.2E-05 52.4 23.7 131 377-535 128-272 (355)
307 3ei3_A DNA damage-binding prot 95.8 6.5 0.00022 53.0 34.9 154 378-565 830-999 (1158)
308 3sre_A PON1, serum paraoxonase 95.5 2 6.9E-05 49.9 24.9 105 377-509 165-287 (355)
309 2vpj_A Kelch-like protein 12; 95.5 1 3.4E-05 50.6 22.1 62 227-291 14-89 (301)
310 2xn4_A Kelch-like protein 2; s 95.4 1 3.6E-05 50.5 21.7 63 227-291 15-88 (302)
311 2ism_A Putative oxidoreductase 95.2 2 6.8E-05 49.9 24.0 240 176-443 38-333 (352)
312 2p9w_A MAL S 1 allergenic prot 95.1 0.55 1.9E-05 53.8 18.1 174 255-456 10-215 (334)
313 3a9g_A Putative uncharacterize 94.4 3.9 0.00013 47.5 23.6 209 216-442 72-329 (354)
314 3ii7_A Kelch-like protein 7; p 94.3 3.6 0.00012 46.1 22.4 60 229-291 13-81 (306)
315 1zgk_A Kelch-like ECH-associat 94.0 2.1 7.3E-05 48.2 19.9 65 225-291 22-101 (308)
316 2g8s_A Glucose/sorbosone dehyd 93.9 11 0.00037 43.5 26.0 68 368-442 263-340 (353)
317 2xzh_A Clathrin heavy chain 1; 93.8 9.1 0.00031 43.7 23.5 74 376-456 259-332 (365)
318 3s84_A Apolipoprotein A-IV; fo 93.8 10 0.00035 42.1 25.9 22 1167-1188 201-222 (273)
319 2vpj_A Kelch-like protein 12; 93.3 3.7 0.00013 45.8 20.2 64 226-291 61-139 (301)
320 4asc_A Kelch repeat and BTB do 93.3 10 0.00034 42.6 23.9 59 230-291 7-78 (315)
321 1cru_A Protein (soluble quinop 92.9 3.7 0.00013 49.4 20.3 112 216-334 26-163 (454)
322 3pbp_A Nucleoporin NUP82; beta 92.5 2.3 7.8E-05 50.2 16.8 163 267-451 29-207 (452)
323 1bpo_A Protein (clathrin); cla 92.4 12 0.00043 44.2 22.6 74 376-456 258-331 (494)
324 3s84_A Apolipoprotein A-IV; fo 92.4 15 0.00052 40.8 22.6 14 1207-1220 212-225 (273)
325 3ii7_A Kelch-like protein 7; p 92.3 4.2 0.00014 45.5 18.7 63 226-291 54-129 (306)
326 2woz_A Kelch repeat and BTB do 92.3 15 0.0005 41.3 23.4 63 390-457 160-232 (318)
327 3s25_A Hypothetical 7-bladed b 92.2 8.5 0.00029 43.5 21.1 211 224-518 21-254 (302)
328 3das_A Putative oxidoreductase 92.2 20 0.00069 41.3 25.3 174 253-457 27-234 (347)
329 1cru_A Protein (soluble quinop 91.8 13 0.00046 44.5 23.4 170 257-459 26-262 (454)
330 1bpo_A Protein (clathrin); cla 91.7 26 0.0009 41.5 31.2 279 162-519 30-331 (494)
331 2xn4_A Kelch-like protein 2; s 91.7 4.4 0.00015 45.3 17.9 62 227-291 61-135 (302)
332 2xzh_A Clathrin heavy chain 1; 90.6 27 0.00094 39.8 31.7 236 224-519 74-332 (365)
333 3ott_A Two-component system se 90.0 51 0.0018 41.9 30.2 245 217-520 146-402 (758)
334 2uvk_A YJHT; unknown function, 90.0 5.6 0.00019 45.6 17.1 63 227-291 19-97 (357)
335 3pbp_A Nucleoporin NUP82; beta 89.8 16 0.00055 43.1 20.3 122 378-516 67-209 (452)
336 4asc_A Kelch repeat and BTB do 88.8 16 0.00054 41.0 19.5 66 224-291 42-128 (315)
337 4gq2_M Nucleoporin NUP120; bet 87.8 49 0.0017 43.6 25.7 41 422-479 237-277 (950)
338 2zwa_A Leucine carboxyl methyl 86.8 7.6 0.00026 49.4 16.6 65 226-291 396-479 (695)
339 2uvk_A YJHT; unknown function, 85.7 19 0.00064 41.1 18.0 52 227-279 65-128 (357)
340 1tl2_A L10, protein (tachylect 85.4 15 0.0005 39.6 15.0 192 270-513 4-204 (236)
341 1zgk_A Kelch-like ECH-associat 85.3 12 0.00042 41.8 15.8 62 227-291 70-148 (308)
342 2wg3_C Hedgehog-interacting pr 85.1 72 0.0025 38.2 33.4 231 217-455 14-311 (463)
343 3ghg_A Fibrinogen alpha chain; 85.0 8.4 0.00029 45.5 13.8 15 1138-1152 181-195 (562)
344 1tl2_A L10, protein (tachylect 85.0 6.4 0.00022 42.4 12.0 108 218-340 42-158 (236)
345 2woz_A Kelch repeat and BTB do 84.4 30 0.001 38.7 18.6 66 224-291 53-138 (318)
346 4gq2_M Nucleoporin NUP120; bet 84.1 48 0.0017 43.6 22.7 91 323-416 178-274 (950)
347 1xi4_A Clathrin heavy chain; a 82.0 26 0.00089 47.5 18.3 197 224-457 73-290 (1630)
348 3ghg_A Fibrinogen alpha chain; 81.0 4.1 0.00014 48.1 9.2 6 1288-1293 439-444 (562)
349 3ott_A Two-component system se 79.6 1.4E+02 0.0048 37.8 36.0 187 217-453 103-304 (758)
350 2be1_A Serine/threonine-protei 79.2 13 0.00045 42.7 12.9 63 229-291 11-78 (339)
351 1deq_A Fibrinogen (alpha chain 78.6 38 0.0013 38.6 15.7 14 1142-1155 188-201 (390)
352 3sbq_A Nitrous-oxide reductase 78.1 1.3E+02 0.0046 36.7 22.9 263 226-507 140-453 (638)
353 3b7f_A Glycosyl hydrolase, BNR 77.3 1.1E+02 0.0038 35.2 24.5 27 378-405 233-259 (394)
354 1xi4_A Clathrin heavy chain; a 75.9 66 0.0023 43.7 19.3 230 237-521 47-291 (1630)
355 3s25_A Hypothetical 7-bladed b 75.1 1.1E+02 0.0038 34.2 22.9 175 222-455 58-254 (302)
356 2be1_A Serine/threonine-protei 70.4 22 0.00076 40.8 11.7 110 390-521 11-132 (339)
357 4hvt_A Ritya.17583.B, post-pro 69.3 2.4E+02 0.0083 35.6 22.8 31 220-250 132-168 (711)
358 2a01_A Apolipoprotein A-I; fou 68.0 59 0.002 35.3 14.0 11 1021-1031 67-77 (243)
359 2a01_A Apolipoprotein A-I; fou 65.9 59 0.002 35.3 13.5 20 972-991 14-33 (243)
360 2zwa_A Leucine carboxyl methyl 64.6 1.6E+02 0.0055 37.1 19.3 111 387-521 451-579 (695)
361 3qhy_B Beta-lactamase inhibito 62.6 1.9E+02 0.0063 31.9 17.8 166 237-456 41-207 (282)
362 4fhn_B Nucleoporin NUP120; pro 62.4 1E+02 0.0036 41.3 17.7 41 422-479 239-279 (1139)
363 3kci_A Probable E3 ubiquitin-p 62.0 2.3E+02 0.0077 32.6 28.9 261 227-519 61-345 (389)
364 3f7f_A Nucleoporin NUP120; nuc 59.1 2E+02 0.007 36.2 17.9 83 325-417 170-259 (729)
365 4fhn_B Nucleoporin NUP120; pro 58.8 1.2E+02 0.0043 40.6 17.5 38 378-416 239-276 (1139)
366 3l6v_A GYRA, DNA gyrase subuni 58.7 2.6E+02 0.0088 32.2 25.7 160 226-406 5-178 (370)
367 1suu_A DNA gyrase subunit A; t 58.6 2.3E+02 0.0079 31.7 23.3 204 226-456 6-231 (312)
368 3l6v_A GYRA, DNA gyrase subuni 51.3 3.3E+02 0.011 31.3 23.6 167 268-456 5-180 (370)
369 3sbq_A Nitrous-oxide reductase 45.9 19 0.00066 43.8 5.5 84 422-519 324-408 (638)
370 2wg3_C Hedgehog-interacting pr 45.7 2.8E+02 0.0097 32.9 16.0 120 377-510 14-160 (463)
371 2l7b_A Apolipoprotein E, APO-E 44.8 1.4E+02 0.0046 33.7 12.0 37 967-1006 34-71 (307)
372 3r2p_A Apolipoprotein A-I; amp 44.3 2.8E+02 0.0096 28.5 15.7 16 973-988 16-31 (185)
373 3uc1_A DNA gyrase subunit A; D 43.9 3.9E+02 0.013 30.0 21.8 210 217-455 42-278 (327)
374 3uc1_A DNA gyrase subunit A; D 43.0 4.1E+02 0.014 29.9 21.3 199 229-456 4-228 (327)
375 1sqj_A OXG-RCBH, oligoxylogluc 40.6 6.7E+02 0.023 31.8 23.0 61 217-277 15-83 (789)
376 3t98_B Nucleoporin NUP58/NUP45 40.2 1.4E+02 0.0047 27.3 9.1 64 1160-1223 8-84 (93)
377 3mvd_K Regulator of chromosome 39.0 5E+02 0.017 29.9 35.8 213 223-456 79-322 (423)
378 3f7f_A Nucleoporin NUP120; nuc 38.8 1.2E+02 0.004 38.3 11.1 37 422-477 223-259 (729)
379 3l1n_A MP1P, cell WALL antigen 38.5 3.5E+02 0.012 28.1 13.2 38 1139-1176 157-194 (194)
380 1deq_A Fibrinogen (alpha chain 37.6 2.7E+02 0.0094 31.8 12.7 23 1134-1156 188-210 (390)
381 3b7f_A Glycosyl hydrolase, BNR 37.3 5E+02 0.017 29.4 20.8 28 316-343 116-145 (394)
382 1m1j_A Fibrinogen alpha subuni 37.1 3.2E+02 0.011 31.9 13.4 15 1002-1016 55-69 (491)
383 4a1q_A ORF E73; viral protein, 35.1 22 0.00076 28.9 2.5 27 1043-1069 19-45 (73)
384 1zi0_A DNA gyrase subunit A; b 35.0 5.1E+02 0.017 28.7 23.7 202 227-456 2-226 (307)
385 3qhy_B Beta-lactamase inhibito 33.7 5E+02 0.017 28.3 16.7 164 237-455 80-245 (282)
386 3mq9_A Bone marrow stromal ant 32.2 3E+02 0.01 32.5 13.4 60 1164-1223 397-462 (471)
387 3iyk_A VP5; icosahedral virus; 29.2 7.8E+02 0.027 29.1 20.0 161 969-1163 147-337 (526)
388 3no0_A DNA gyrase subunit A; D 28.9 6E+02 0.02 27.7 23.5 208 217-456 24-246 (276)
389 2cly_A ATP synthase B chain, m 28.8 4.3E+02 0.015 27.9 11.9 15 1029-1043 93-107 (214)
390 4d9s_A UVB-resistance protein 28.1 7.2E+02 0.025 28.4 34.1 207 224-456 21-253 (406)
391 2l7b_A Apolipoprotein E, APO-E 26.2 2.1E+02 0.0071 32.1 9.6 10 1002-1011 104-113 (307)
392 3zwu_A Alkaline phosphatase PH 25.9 1.3E+02 0.0044 37.1 8.5 59 379-442 478-548 (592)
393 2lem_A Apolipoprotein A-I; lip 25.0 6.2E+02 0.021 26.5 13.9 20 972-991 13-32 (216)
394 3r2p_A Apolipoprotein A-I; amp 24.2 4.3E+02 0.015 27.0 11.1 62 967-1030 20-88 (185)
395 1zi0_A DNA gyrase subunit A; b 23.3 7.8E+02 0.027 27.1 24.3 214 269-518 2-225 (307)
396 3q6k_A 43.2 kDa salivary prote 23.2 8.9E+02 0.031 27.8 21.2 136 258-408 152-306 (381)
397 3kci_A Probable E3 ubiquitin-p 22.9 8.6E+02 0.03 27.5 29.0 216 218-456 106-345 (389)
398 3iv1_A Tumor susceptibility ge 22.8 3.9E+02 0.013 23.5 8.8 31 1193-1223 42-72 (78)
399 2avr_X Adhesion A; antiparalle 22.6 5E+02 0.017 24.7 10.6 78 966-1044 7-95 (119)
400 3u0c_A Invasin IPAB, 62 kDa an 21.2 3.9E+02 0.013 26.7 8.9 62 1157-1223 82-143 (201)
401 3trt_A Vimentin; cytoskeleton, 21.1 4E+02 0.014 22.9 9.2 11 1210-1220 55-65 (77)
402 3vkg_A Dynein heavy chain, cyt 21.0 2.3E+03 0.079 31.9 28.3 13 1002-1014 1918-1930(3245)
403 4d9s_A UVB-resistance protein 20.0 1E+03 0.034 27.2 35.3 224 259-518 122-356 (406)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3e-35 Score=375.51 Aligned_cols=429 Identities=14% Similarity=0.112 Sum_probs=303.0
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCee----eeCceEEEEEeccCCCccCcc--------------cccceeeee
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHL----IGNHSVYDIDVRLDGEVQPQL--------------EVTPITKYI 213 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L----~G~~~v~~v~~~~~G~~~~~~--------------~~~~i~~l~ 213 (1395)
+.++|++..|++++.|++|++||+....+... .....|+.+.+.++|..+... .+..+..+.
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~ 144 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 144 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceec
Confidence 67788899999999999999999643333322 235678888888887654311 123455678
Q ss_pred CCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+|...|++++|+|++. +|++|+.|++|++||..++ +...+.+|.+.|++++| ++++.+|++|+.||+|+|||+.+++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~f-spdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY-NPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEE-CCCCCEEEEEECCCcEEEEECCCCc
Confidence 9999999999999987 6999999999999998876 46789999999999999 8999999999999999999999887
Q ss_pred CCCCCcccccceEEEEEEec-------CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC---------
Q 039790 292 DEEDKPQILGKIVVAIQILA-------DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE--------- 355 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~-------~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~--------- 355 (1395)
.+..+. .|...|.+++|+|++..+++++.++.+.+|+.........+...
T Consensus 224 --------------~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 224 --------------KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp --------------EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred --------------EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 233332 57889999999999988888887888888776532111101000
Q ss_pred ------------CCCccCcccccc--ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cCCCC
Q 039790 356 ------------EPLKCPVDELIN--GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RPYDG 420 (1395)
Q Consensus 356 ------------~~~~~~~~~~~~--~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~h~~ 420 (1395)
..-.+.+|+... ....+.+|...|++++|+|+| .+|++++.||+|++||+.++.+...+ .+|..
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 000112233222 245677999999999999998 89999999999999999999888776 57876
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC-------CCc-------c-------cccEEEEEeccC
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP-------SDI-------E-------SWKCTQTLELKS 479 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~-------~~~-------~-------~~~~l~tl~~h~ 479 (1395)
.|.+++|+ +++ .|++++ .|++|++|++..+.-.... ... . ....+..+....
T Consensus 369 -~v~~~~~s----~~~-~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 369 -MITGIKTT----SKG-DLFTVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp -CEEEEEEC----TTS-CEEEEE-TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred -eEEEEEEC----CCC-cEEEEE-cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 99999998 666 566766 9999999998764210000 000 0 000111111000
Q ss_pred cccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCc--C--cCCC
Q 039790 480 SAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDA--S--PDGE 555 (1395)
Q Consensus 480 ~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~--~--~s~d 555 (1395)
.......+...+++|+|||.+|++|+.|+.|++|++..+. +..+........+.++.+.. +. + .+.|
T Consensus 442 --~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~------~~~~~~~~h~~~v~~v~fsp-dg~~las~s~d 512 (611)
T 1nr0_A 442 --LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS------VSEVKTIVHPAEITSVAFSN-NGAFLVATDQS 512 (611)
T ss_dssp --EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE------EEEEEEEECSSCEEEEEECT-TSSEEEEEETT
T ss_pred --eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc------eeeeeccCCCCceEEEEECC-CCCEEEEEcCC
Confidence 0000112234579999999999999999999999997632 11122222223444444443 22 2 3678
Q ss_pred CeEEEEEcCC-Cceee-----ecccceEEecCCCCC--eecccCCCceEEEeecCCCCc-c-eeeccC
Q 039790 556 HIVQIYCVQT-QAIQQ-----YALDLSQCLPPPLEN--AELEKTDSNATRAFDVANPDG-S-ASLESS 613 (1395)
Q Consensus 556 g~V~lWdv~t-~~i~~-----~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD~~tg~~-~-~~l~g~ 613 (1395)
+.|++|++.+ +++.. .|.....|+.|++|+ ++.++ .++.+++||+.++.. + ..+.++
T Consensus 513 ~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs-~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS-LDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTCTTSCCEEETTSS
T ss_pred CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEE-CCCcEEEEECCCcccccchhhccC
Confidence 9999999998 55432 266678899999986 55555 557778999998874 3 455543
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-34 Score=368.14 Aligned_cols=288 Identities=17% Similarity=0.197 Sum_probs=223.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
++++|++..|++++ ++.|++|++. ....+..|.+|.+.|++++|+|||++|
T Consensus 24 ~~~spdg~~l~~~~-~~~v~l~~~~----------------------------~~~~~~~~~~h~~~v~~~~~spdg~~l 74 (611)
T 1nr0_A 24 LGNTPAGDKIQYCN-GTSVYTVPVG----------------------------SLTDTEIYTEHSHQTTVAKTSPSGYYC 74 (611)
T ss_dssp CEECTTSSEEEEEE-TTEEEEEETT----------------------------CSSCCEEECCCSSCEEEEEECTTSSEE
T ss_pred EeeCCCCCEEEeCC-CCEEEEecCC----------------------------CcccCeEecCCCCceEEEEECCCCcEE
Confidence 55677778888877 5688898843 113456788999999999999999999
Q ss_pred EEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECC----CcEEEEECCCCCCCCCCcccccceE
Q 039790 232 CYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVD----GRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D----gtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
|+|+.||+|+|||+.++ ....+.+|.+.|.+++| ++++.+|++++.+ ++|++||. +..
T Consensus 75 asg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~f-s~dg~~l~~~~~~~~~~~~v~~wd~--~~~------------ 139 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW-DSESKRIAAVGEGRERFGHVFLFDT--GTS------------ 139 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEE-CTTSCEEEEEECCSSCSEEEEETTT--CCB------------
T ss_pred EEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEE-CCCCCEEEEEECCCCceeEEEEeeC--CCC------------
Confidence 99999999999999754 35578899999999999 8999999999876 47888874 331
Q ss_pred EEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla 383 (1395)
+..+..|...|.+++|+|++..+++++. ++.+.+|+. ..++ ....+.+|.+.|++++
T Consensus 140 --~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-~~~~-------------------~~~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 140 --NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-PPFK-------------------FKSTFGEHTKFVHSVR 197 (611)
T ss_dssp --CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET-TTBE-------------------EEEEECCCSSCEEEEE
T ss_pred --cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC-CCCe-------------------EeeeeccccCceEEEE
Confidence 1234578889999999999986555555 555555543 2211 1567889999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
|+|+| .+|++|+.|++|+|||+.+++++..+. +|.+ .|++|+|+ |+|++|++++ .|++|+|||+.+
T Consensus 198 fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~-~V~~v~~s----pdg~~l~s~s-~D~~v~lWd~~~ 270 (611)
T 1nr0_A 198 YNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFGLTWS----PDGTKIASAS-ADKTIKIWNVAT 270 (611)
T ss_dssp ECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS-CEEEEEEC----TTSSEEEEEE-TTSEEEEEETTT
T ss_pred ECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC-CEEEEEEC----CCCCEEEEEe-CCCeEEEEeCCC
Confidence 99998 899999999999999999999999884 7987 99999999 9999999977 999999999988
Q ss_pred CCCCC-CCC------------------------------CcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE
Q 039790 457 EEGWL-LPS------------------------------DIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA 505 (1395)
Q Consensus 457 g~~~~-~~~------------------------------~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS 505 (1395)
++... +.. +.....+...+.+|... +..++|+++|.+|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~---------v~~l~~spdg~~l~s 341 (611)
T 1nr0_A 271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKA---------ITALSSSADGKTLFS 341 (611)
T ss_dssp TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSC---------EEEEEECTTSSEEEE
T ss_pred CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCC---------EEEEEEeCCCCEEEE
Confidence 71000 000 00011122333334333 235899999999999
Q ss_pred EeCCCeEEEEEcCCCC
Q 039790 506 NAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 506 gs~Dg~I~iWdl~~g~ 521 (1395)
++.|+.|++||+.++.
T Consensus 342 ~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 342 ADAEGHINSWDISTGI 357 (611)
T ss_dssp EETTSCEEEEETTTCC
T ss_pred EeCCCcEEEEECCCCc
Confidence 9999999999998753
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-34 Score=350.40 Aligned_cols=276 Identities=13% Similarity=0.141 Sum_probs=242.3
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.|.+..|++++.|++|++||.. .+..+..+.+|.+.|.+++|+++|++|
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~----------------------------~~~~~~~l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYE----------------------------TGDFERTLKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETT----------------------------TCCCCEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----------------------------CCcEEEEEeccCCcEEEEEEcCCCCEE
Confidence 5566677899999999999999943 123456788999999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||+|+|||+.++ ++..+.+|...|.+++| ++++++|++|+.||+|++||+.++. ++..+
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~-~p~~~~l~s~s~D~~i~~wd~~~~~--------------~~~~~ 230 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI-MPNGDHIVSASRDKTIKMWEVQTGY--------------CVKTF 230 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTCC--------------EEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEE-eCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEE
Confidence 99999999999999887 57789999999999999 8999999999999999999999887 55666
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC--
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL-- 388 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg-- 388 (1395)
..|...+.++.|++++..+++++.++.+.+|+..... ....+.+|...|.+++|+|++
T Consensus 231 ~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~--------------------~~~~~~~h~~~v~~~~~~~~~~~ 290 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--------------------CKAELREHRHVVECISWAPESSY 290 (410)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------------EEEEECCCSSCEEEEEECCSCGG
T ss_pred eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------------------eeeEecCCCceEEEEEEcCcccc
Confidence 7888899999999999888887778888887764321 145677899999999999963
Q ss_pred -----------------CcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 389 -----------------TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 389 -----------------~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
+.+|++|+.||+|+|||++++.++.++.+|.+ .|++|+|+ |+|++|++++ .|++|+|
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~----~~g~~l~s~s-~D~~i~v 364 (410)
T 1vyh_C 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFH----SGGKFILSCA-DDKTLRV 364 (410)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEC----SSSSCEEEEE-TTTEEEE
T ss_pred cchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEEEEEc----CCCCEEEEEe-CCCeEEE
Confidence 26899999999999999999999999999997 99999999 9999999977 9999999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
||+.++ +++.++.+|...+. .++|++++.+|++|+.|++|++|++
T Consensus 365 wd~~~~------------~~~~~~~~h~~~v~---------~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 365 WDYKNK------------RCMKTLNAHEHFVT---------SLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCTTS------------CCCEEEECCSSCEE---------EEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EECCCC------------ceEEEEcCCCCcEE---------EEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999888 88999998887654 4999999999999999999999986
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-34 Score=346.30 Aligned_cols=285 Identities=20% Similarity=0.224 Sum_probs=236.9
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
...+.+|.+.|++++|+|++.+|++|+.||+|+|||+.++ ....+.+|.+.|++++| ++++.+|++|+.||+|+|||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~-~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEE-CTTSSEEEEEETTSCCCEEET
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEE-cCCCCEEEEEeCCCeEEEEeC
Confidence 5678899999999999999999999999999999999987 47789999999999999 899999999999999999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
.++. ++..+..|...|.+++|+|++..+++++.++.+.+|+.... .
T Consensus 180 ~~~~--------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~------------------- 225 (410)
T 1vyh_C 180 QGFE--------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-Y------------------- 225 (410)
T ss_dssp TSSC--------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-C-------------------
T ss_pred CCCc--------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-c-------------------
Confidence 8876 55667788899999999999988888888888887776432 1
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCC------------
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQ------------ 435 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pd------------ 435 (1395)
.+..+.+|...|.++.|++++ .+|++|+.||+|++||++++.+...+.+|.. .|.+++|+ |+
T Consensus 226 ~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~----~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 226 CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRH-VVECISWA----PESSYSSISEATGS 299 (410)
T ss_dssp EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC----CSCGGGGGGGCCSC
T ss_pred EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCc-eEEEEEEc----Ccccccchhhhccc
Confidence 156778899999999999998 8999999999999999999999999999997 99999998 64
Q ss_pred --------CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 436 --------HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 436 --------g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|.+|++++ .|++|+|||++++ .++.++.+|...+. .++|+++|.+|++|+
T Consensus 300 ~~~~~~~~g~~l~sgs-~D~~i~iwd~~~~------------~~~~~~~~h~~~v~---------~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGS-RDKTIKMWDVSTG------------MCLMTLVGHDNWVR---------GVLFHSGGKFILSCA 357 (410)
T ss_dssp C-------CCEEEEEE-TTSEEEEEETTTT------------EEEEEEECCSSCEE---------EEEECSSSSCEEEEE
T ss_pred cccccCCCCCEEEEEe-CCCeEEEEECCCC------------ceEEEEECCCCcEE---------EEEEcCCCCEEEEEe
Confidence 66788866 9999999999988 99999999887654 489999999999999
Q ss_pred CCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCC-CcC--cCCCCeEEEEEc
Q 039790 508 KKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTT-DAS--PDGEHIVQIYCV 563 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~-d~~--~s~dg~V~lWdv 563 (1395)
.|+.|++||+..+. ++..+..+. ..+.++..... ..+ ++.|+.|+||++
T Consensus 358 ~D~~i~vwd~~~~~-----~~~~~~~h~--~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 358 DDKTLRVWDYKNKR-----CMKTLNAHE--HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTTEEEEECCTTSC-----CCEEEECCS--SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCeEEEEECCCCc-----eEEEEcCCC--CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999997653 222222222 23333333320 112 346777777764
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.7e-33 Score=348.30 Aligned_cols=334 Identities=18% Similarity=0.215 Sum_probs=269.2
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
....+..+.+|...|.+++|++++++|++|+.||.|++||.....+..+.+|...|.+++| .+++.+|++++.|++|++
T Consensus 210 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~-~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAF-RPDGQTIASASDDKTVKL 288 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEE
T ss_pred CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEE-cCCCCEEEEEeCCCEEEE
Confidence 3455677889999999999999999999999999999999887788899999999999999 899999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||.. ++ .+..+..|...+.+++|+|++..+++++.++.+.+|+... .
T Consensus 289 w~~~-~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~----------------- 335 (577)
T 2ymu_A 289 WNRN-GQ--------------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-Q----------------- 335 (577)
T ss_dssp EETT-SC--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-C-----------------
T ss_pred EeCC-Cc--------------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-C-----------------
Confidence 9965 33 3455677888999999999998888777777777776422 1
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
.+..+.+|...|++++|+|++ .+|++|+.||.|++|| .+++++..+.+|.. .|.+++|+ |||++|++++
T Consensus 336 ---~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~-~v~~~~~s----~dg~~l~~~~- 404 (577)
T 2ymu_A 336 ---HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWN-RNGQLLQTLTGHSS-SVRGVAFS----PDGQTIASAS- 404 (577)
T ss_dssp ---EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEE-TTCCEEEEEECCSS-CEEEEEEC----TTSSCEEEEE-
T ss_pred ---eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEc-CCCCEEEEecCCCC-CeEEEEEC----CCCCEEEEEe-
Confidence 145677899999999999998 8999999999999999 56888999999987 99999999 9999999977
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~ 524 (1395)
.|+.|+|||. ++ +++.++..|...+. .++|++|+.+|++++.|+.|++|++.. +
T Consensus 405 ~d~~v~~~~~-~~------------~~~~~~~~~~~~v~---------~~~~s~d~~~l~~~~~d~~v~~w~~~~-~--- 458 (577)
T 2ymu_A 405 DDKTVKLWNR-NG------------QLLQTLTGHSSSVW---------GVAFSPDDQTIASASDDKTVKLWNRNG-Q--- 458 (577)
T ss_dssp TTSEEEEECT-TC------------CEEEEEECCSSCEE---------EEEECTTSSEEEEEETTSEEEEEETTS-C---
T ss_pred CCCEEEEEeC-CC------------CEEEEecCCCCCeE---------EEEECCCCCEEEEEcCCCEEEEEECCC-C---
Confidence 9999999995 34 77888988887654 489999999999999999999999643 1
Q ss_pred CcceeeeeeeeccccEEEEecCCC-CcC--cCCCCeEEEEEcCCCceee--ecccceEEecCCCCC--eecccCCCceEE
Q 039790 525 STRMDYIAEFTVTMPILSLTGTTT-DAS--PDGEHIVQIYCVQTQAIQQ--YALDLSQCLPPPLEN--AELEKTDSNATR 597 (1395)
Q Consensus 525 ~~~~~~i~~f~~~~~ils~~~~~~-d~~--~s~dg~V~lWdv~t~~i~~--~~~~~~~cl~~s~d~--l~~~~sd~~v~~ 597 (1395)
.+..+..+. ..+..+..... ..+ .+.|+.|+||+.....+.. .|.....|+.|++++ ++.++ +++.++
T Consensus 459 --~~~~~~~~~--~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~dg~v~ 533 (577)
T 2ymu_A 459 --LLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVK 533 (577)
T ss_dssp --EEEEEECCS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEE
T ss_pred --EEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE-CcCEEE
Confidence 222232222 33444443330 222 3578999999976554443 355567788888876 55555 568888
Q ss_pred EeecCCCCcceeeccCCC
Q 039790 598 AFDVANPDGSASLESSHG 615 (1395)
Q Consensus 598 iWD~~tg~~~~~l~g~~~ 615 (1395)
+||. +++++.++.|+.+
T Consensus 534 lwd~-~~~~~~~~~~h~~ 550 (577)
T 2ymu_A 534 LWNR-NGQLLQTLTGHSS 550 (577)
T ss_dssp EECT-TSCEEEEEECCSS
T ss_pred EEeC-CCCEEEEEcCCCC
Confidence 9995 7899999996544
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.6e-33 Score=350.84 Aligned_cols=369 Identities=19% Similarity=0.228 Sum_probs=290.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCee----eeCceEEEEEeccCCCccC-----------cccccceeeeeCCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHL----IGNHSVYDIDVRLDGEVQP-----------QLEVTPITKYISDP 216 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L----~G~~~v~~v~~~~~G~~~~-----------~~~~~~i~~l~~h~ 216 (1395)
....+.+..|++++.|+.|++|+. +++.+ .....+..+.+.++|..+. ......+..+.+|.
T Consensus 186 ~~~~~~~~~l~~~~~d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 262 (577)
T 2ymu_A 186 VAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 262 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT---TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCS
T ss_pred eeecCCCCEEEEEcCCCEEEEEeC---CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCC
Confidence 445667789999999999999983 34444 2244566666666554432 23456677889999
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
..|.+++|++++++|++++.|+.|++||........+.+|...|++++| ++++.+|++++.||+|++||+....
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~t~~~d~~i~~w~~~~~~----- 336 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRNGQH----- 336 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTSCE-----
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEE-CCCCCEEEEEeCCCeEEEEeCCCCe-----
Confidence 9999999999999999999999999999888788899999999999999 8999999999999999999986532
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
+..+..+...+.+++|+|++..+++++.++.+.+|+.. +. .+..+.+|.
T Consensus 337 ----------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~-------------------~~~~~~~~~ 385 (577)
T 2ymu_A 337 ----------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQ-------------------LLQTLTGHS 385 (577)
T ss_dssp ----------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--CC-------------------EEEEEECCS
T ss_pred ----------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CC-------------------EEEEecCCC
Confidence 44556778889999999999877777777777666631 11 156677899
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
..|++++|+|++ .+|++++.|+.|++|| .+++.+..+.+|.. .|++++|+ ||+++|++++ .|++|++||..
T Consensus 386 ~~v~~~~~s~dg-~~l~~~~~d~~v~~~~-~~~~~~~~~~~~~~-~v~~~~~s----~d~~~l~~~~-~d~~v~~w~~~- 456 (577)
T 2ymu_A 386 SSVRGVAFSPDG-QTIASASDDKTVKLWN-RNGQLLQTLTGHSS-SVWGVAFS----PDDQTIASAS-DDKTVKLWNRN- 456 (577)
T ss_dssp SCEEEEEECTTS-SCEEEEETTSEEEEEC-TTCCEEEEEECCSS-CEEEEEEC----TTSSEEEEEE-TTSEEEEEETT-
T ss_pred CCeEEEEECCCC-CEEEEEeCCCEEEEEe-CCCCEEEEecCCCC-CeEEEEEC----CCCCEEEEEc-CCCEEEEEECC-
Confidence 999999999998 8999999999999999 46888999999997 99999999 9999999977 99999999963
Q ss_pred CCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeec
Q 039790 457 EEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTV 536 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~ 536 (1395)
+ +++..+..|...+. .++|+++|.+|++++.|+.|++|+.. ++ . +..+..
T Consensus 457 ~------------~~~~~~~~~~~~v~---------~~~~spd~~~las~~~d~~i~iw~~~-~~-----~---~~~~~~ 506 (577)
T 2ymu_A 457 G------------QLLQTLTGHSSSVR---------GVAFSPDGQTIASASDDKTVKLWNRN-GQ-----L---LQTLTG 506 (577)
T ss_dssp S------------CEEEEEECCSSCEE---------EEEECTTSCEEEEEETTSEEEEEETT-SC-----E---EEEEEC
T ss_pred C------------CEEEEEcCCCCCEE---------EEEEcCCCCEEEEEeCCCEEEEEcCC-CC-----E---EEEEeC
Confidence 4 78888988887654 49999999999999999999999953 22 2 333333
Q ss_pred c-ccEEEEecCCC-CcC--cCCCCeEEEEEcCCCceee--ecccceEEecCCCCC--eecccCCCceEEEee
Q 039790 537 T-MPILSLTGTTT-DAS--PDGEHIVQIYCVQTQAIQQ--YALDLSQCLPPPLEN--AELEKTDSNATRAFD 600 (1395)
Q Consensus 537 ~-~~ils~~~~~~-d~~--~s~dg~V~lWdv~t~~i~~--~~~~~~~cl~~s~d~--l~~~~sd~~v~~iWD 600 (1395)
+ ..+..+..... ..+ .+.|+.|+|||+....+.. .|.....|+.|++|+ ++.++ .++.+++||
T Consensus 507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~-~D~~i~~Wd 577 (577)
T 2ymu_A 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS-SDKTVKLWN 577 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSCEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCEEEEeC
Confidence 3 23434433330 222 4678999999975544443 356667888888876 55555 457778997
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=330.56 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=237.3
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcC
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKL 237 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~D 237 (1395)
+..|++++.|++|++|+.... .......+.+|...|.+++|++++.++++|+.|
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~--------------------------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDE--------------------------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETT--------------------------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred CCEEEEEcCCCCEEEEECCCC--------------------------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 468999999999999993310 012234577999999999999999999999999
Q ss_pred CeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 238 GNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 238 G~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
|+|+|||+.++ .+..+..|...|.+++| ++++++|++|+.||.|++||+.+++ ....+..+...
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~g~~dg~v~i~~~~~~~--------------~~~~~~~~~~~ 166 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAF-SPDSQYLATGTHVGKVNIFGVESGK--------------KEYSLDTRGKF 166 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEE-CTTSSEEEEECTTSEEEEEETTTCS--------------EEEEEECSSSC
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEE-CCCCCEEEEEcCCCcEEEEEcCCCc--------------eeEEecCCCce
Confidence 99999999988 46778889999999999 9999999999999999999999876 33445566778
Q ss_pred ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe
Q 039790 317 HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS 396 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs 396 (1395)
+.+++|+|++..+++++.++.+.+|+.... + .+..+.+|...|++++|+|++ .+|++|+
T Consensus 167 v~~~~~spdg~~lasg~~dg~i~iwd~~~~-~-------------------~~~~~~~h~~~v~~l~~spd~-~~l~s~s 225 (321)
T 3ow8_A 167 ILSIAYSPDGKYLASGAIDGIINIFDIATG-K-------------------LLHTLEGHAMPIRSLTFSPDS-QLLVTAS 225 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT-E-------------------EEEEECCCSSCCCEEEECTTS-CEEEEEC
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCC-c-------------------EEEEEcccCCceeEEEEcCCC-CEEEEEc
Confidence 899999999998888888888888876432 1 156778899999999999998 8999999
Q ss_pred CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 397 LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
.||+|+|||++++.++.++.+|.+ .|.+++|+ |++.+|++++ .|++|+|||+.++ +++.++.
T Consensus 226 ~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~s----p~~~~l~s~s-~D~~v~iwd~~~~------------~~~~~~~ 287 (321)
T 3ow8_A 226 DDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFC----PDDTHFVSSS-SDKSVKVWDVGTR------------TCVHTFF 287 (321)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC----TTSSEEEEEE-TTSCEEEEETTTT------------EEEEEEC
T ss_pred CCCeEEEEECCCcceeEEEcCCCC-ceEEEEEC----CCCCEEEEEe-CCCcEEEEeCCCC------------EEEEEEc
Confidence 999999999999999999999997 99999999 9999999977 9999999999988 9999999
Q ss_pred ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 477 ~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.|...+. .++|+++|.+|++++.|+.|++||+.
T Consensus 288 ~h~~~v~---------~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 288 DHQDQVW---------GVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCSSCEE---------EEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCcEE---------EEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 8887654 49999999999999999999999963
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.7e-33 Score=323.89 Aligned_cols=257 Identities=18% Similarity=0.162 Sum_probs=222.9
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
...++|.+|.+.|++++|+|++++|++|+.||.|+|||+.++ .+..+.+|...|.+++| ++++++|++|+.||+|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-EGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEE-eCCCCEEEEECCCCEEEEE
Confidence 456789999999999999999999999999999999999987 47788999999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++ .+..+..|...+.+++|+|++..+++++.++.+.+|+......
T Consensus 83 d~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----------------- 131 (304)
T 2ynn_A 83 NYNTGE--------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------------- 131 (304)
T ss_dssp ETTTCC--------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------------
T ss_pred ECCCCc--------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------------
Confidence 999887 4556678899999999999999888888888888887643211
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
....+.+|...|++++|+|+++.+|++|+.||+|++||++.+.+...+..+....|..+.|++. +++.+|++++ .
T Consensus 132 --~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~s-~ 206 (304)
T 2ynn_A 132 --LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL--PDKPYMITAS-D 206 (304)
T ss_dssp --EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS--TTCCEEEEEE-T
T ss_pred --hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc--CCCCEEEEEc-C
Confidence 1456788999999999999655899999999999999999988777766443338999999822 4788999876 9
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|++|+|||++++ +++.++.+|...+. .++|++++.+|++|+.||+|++||+.+++
T Consensus 207 D~~i~iWd~~~~------------~~~~~~~~h~~~v~---------~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 207 DLTIKIWDYQTK------------SCVATLEGHMSNVS---------FAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp TSEEEEEETTTT------------EEEEEEECCSSCEE---------EEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred CCeEEEEeCCCC------------ccceeeCCCCCCEE---------EEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999988 99999999987654 48999999999999999999999998753
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=330.00 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=216.9
Q ss_pred ceeeeeCCCCCEEEEEEecC----CCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 208 PITKYISDPGLVLGRQIAVN----RNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spd----g~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
....+.+|.+.|++++|+++ +.+|++|+.||+|+|||+..+. ...+.+|...|.+++| ++++.++++|+.||
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~-~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI-SHTLPIAASSSLDA 102 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CSSSSEEEEEETTS
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEE-CCCCCEEEEEeCCC
Confidence 34566789999999999974 6799999999999999998763 4468999999999999 89999999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|++||+.+++ .+..+..+...+.+++|+|++..+++++.++.+.+|+......
T Consensus 103 ~i~lWd~~~~~--------------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~------------ 156 (321)
T 3ow8_A 103 HIRLWDLENGK--------------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK------------ 156 (321)
T ss_dssp EEEEEETTTTE--------------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE------------
T ss_pred cEEEEECCCCC--------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce------------
Confidence 99999999876 4455566777888999999998888777777777777643211
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
...+..|...|.+++|+|++ ++|++|+.||.|++||+++++++.++.+|.. .|++++|+ |++++|+
T Consensus 157 --------~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~s----pd~~~l~ 222 (321)
T 3ow8_A 157 --------EYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAM-PIRSLTFS----PDSQLLV 222 (321)
T ss_dssp --------EEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSS-CCCEEEEC----TTSCEEE
T ss_pred --------eEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCC-ceeEEEEc----CCCCEEE
Confidence 45566788999999999998 8999999999999999999999999999987 99999999 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++ .|++|+|||++++ .++.++.+|...+. .++|+++|.+|++++.|+.|++||+.++
T Consensus 223 s~s-~dg~i~iwd~~~~------------~~~~~~~~h~~~v~---------~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 223 TAS-DDGYIKIYDVQHA------------NLAGTLSGHASWVL---------NVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp EEC-TTSCEEEEETTTC------------CEEEEECCCSSCEE---------EEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEc-CCCeEEEEECCCc------------ceeEEEcCCCCceE---------EEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 966 9999999999988 88899998887654 4999999999999999999999999874
No 10
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=100.00 E-value=5e-36 Score=298.84 Aligned_cols=138 Identities=24% Similarity=0.352 Sum_probs=121.3
Q ss_pred CcHHHHHHHhhhccHHHHHHHHhccCChHHHHHHHhcCCCCCccccCCCCcchhHHHHHHHHhhcccccchhhHHHHHHH
Q 039790 1257 DPTKELSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLACDISKETPRKLAWMTD 1336 (1395)
Q Consensus 1257 d~~~~i~~l~~~g~~eeAf~~aL~s~d~~l~~~l~~~~~p~~l~~~~p~~Lsq~vlLsLiqqLs~dL~~~~~~kl~wle~ 1336 (1395)
|+.++|.+||++|+|||||++||+++|+++|+|+|+++||.+||+..|++|||+|||||+||||+||++++++||+|||+
T Consensus 2 ~~~~~I~~Ll~~g~~eeAf~~aL~ssd~~lv~~lc~~~dp~~~~~~~~~~Lsq~vLLSLiqqls~dL~~~~~~Kl~WLe~ 81 (139)
T 2vxg_A 2 AMGDSIKQLLMAGQINKAFHQALLANDLGLVEFTLRHTDSNQAFAPEGCRLEQKVLLSLIQQISADMTNHNELKQRYLNE 81 (139)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHSCHHHHTC----CCCHHHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHhCcHHHHHHHHHcCCHHHhcCCCCCCccHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHcCCCCchhhhhHHHHHHHHHHHhhccccCCCCCccccchHHHHHHHHHHHHhhcC
Q 039790 1337 VAVAINPADPMISMHVRPIFEQVYQILGHQRNLPSTSASEANSIRLLMHVINSVLMSCK 1395 (1395)
Q Consensus 1337 ~~~~l~~~dp~i~~~~p~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1395 (1395)
|+++||++||+|++|+|+||++|++||++++.... .+...++||+|+|+||+|++.+|
T Consensus 82 vl~aid~~dp~i~~~~p~Il~~l~~~L~~~~~~~p-~~~~~~~i~~l~~~~~~l~~~~~ 139 (139)
T 2vxg_A 82 ALLAINMADPITREHAPKVLTELYRNCQQFIKNSP-KNSQFSNVRLLMKAIITYRDQLK 139 (139)
T ss_dssp HHHHCCTTSHHHHHHHHHHHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-CChHHhHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999997643311 24455999999999999998775
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=331.30 Aligned_cols=288 Identities=13% Similarity=0.062 Sum_probs=218.9
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+++++..|++++ |+++|+|+ ..+|.+.....+ ...... .....|...|.+++|++++ +|
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd------------~~~~~~~~~~~~----~~~~~~-~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWA------------GSLWLFKDPCAA----PNEGFC-SAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCC------------EEEEEESSGGGT----TCGGGC-SEEEEESSCEEEEEEETTT-EE
T ss_pred EEECCCCCEEEEEe-CCceEEee------------ceeeeecccccc----CCccee-eeeeccCCCEEEEEEeCCC-eE
Confidence 45567777777776 77888887 223333211111 011111 2223456789999999985 68
Q ss_pred EEEEcCCeEEEEECCCCc-----eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 232 CYGLKLGNIRILNIITAL-----RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-----~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
++|+.||+|+|||+.++. ...+.+|.+.|++|+| ++++++|++|+.||+|+|||+.+++ .
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~-spdg~~l~sgs~d~~i~iwd~~~~~--------------~ 161 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV-LSSGTQAVSGSKDICIKVWDLAQQV--------------V 161 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTE--------------E
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCc--------------E
Confidence 899999999999999873 2345689999999999 8999999999999999999999876 5
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEE--cccCCCeEEEE
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV--GKHDGEITELS 383 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l--~~h~~~V~sla 383 (1395)
+..+..|...|++++|++++..+++++. ++.+.+||... ++. ...+ ..|...+++++
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~-------------------~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKP-------------------ASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSC-------------------EEECC----CCCEEEEE
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cce-------------------eeeeecceeeccceeee
Confidence 6677889999999999999987666555 55666665533 221 2222 34667899999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEEEecCCCeEEEEECCCCCCCCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
|+|+++++|++|+.||+|+|||+++++++.++.+|.+ .|++|+|+ |+|. +|++++ .|++|+|||+.++
T Consensus 222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fs----p~g~~~lasgs-~D~~i~vwd~~~~----- 290 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFS----PHSVPFLASLS-EDCSLAVLDSSLS----- 290 (344)
T ss_dssp ECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEEC----SSSSCCEEEEE-TTSCEEEECTTCC-----
T ss_pred ecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEc----cCCCeEEEEEe-CCCeEEEEECCCC-----
Confidence 9998778999999999999999999999999999998 99999999 9985 566655 9999999999887
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEeCCCeEEEEEcCCCC
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+++ .+.+|.+.+. .++|+|+|. +|++++.|++|++|++...+
T Consensus 291 -------~~~-~~~~H~~~V~---------~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 291 -------ELF-RSQAHRDFVR---------DATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp -------EEE-EECCCSSCEE---------EEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred -------cEE-EEcCCCCCEE---------EEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 654 4677776654 499999886 67799999999999998743
No 12
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-32 Score=322.32 Aligned_cols=257 Identities=14% Similarity=0.143 Sum_probs=218.3
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.....++.+|.+.|++++|++++++|++|+.||+|+|||+.++ ....+..|...|.+++| ++++.+|++|+.||.|++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY-APSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEE-CTTSSEEEEEETTCEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEE-CCCCCEEEEEeCCCeEEE
Confidence 4566789999999999999999999999999999999999887 47788899999999999 899999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||+.++.. .......+..|...+.++.|++++ .+++++.++.+.+|+.... .
T Consensus 124 w~~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~-~---------------- 175 (340)
T 1got_B 124 YNLKTREG----------NVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETG-Q---------------- 175 (340)
T ss_dssp EETTTCSB----------SCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTT-E----------------
T ss_pred EECccCCC----------cceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCC-c----------------
Confidence 99987541 112344566788899999999876 4777777777777765332 1
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
.+..+.+|.+.|++++|+|++ .+|++|+.||+|++||++++.++.++.+|.. .|++++|+ |++.+|++++
T Consensus 176 ---~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~----p~~~~l~s~s- 245 (340)
T 1got_B 176 ---QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFF----PNGNAFATGS- 245 (340)
T ss_dssp ---EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEEC----TTSSEEEEEE-
T ss_pred ---EEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcC-CEEEEEEc----CCCCEEEEEc-
Confidence 156778899999999999998 8999999999999999999999999999997 99999999 9999999977
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.|++|+|||++++ +++..+..+... .....++|+++|.+|++|+.|+.|++||+..+
T Consensus 246 ~d~~v~iwd~~~~------------~~~~~~~~~~~~-------~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 246 DDATCRLFDLRAD------------QELMTYSHDNII-------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp TTSCEEEEETTTT------------EEEEEECCTTCC-------SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCcEEEEECCCC------------cEEEEEccCCcc-------cceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999887 677666532211 11246899999999999999999999998764
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-32 Score=323.39 Aligned_cols=274 Identities=15% Similarity=0.147 Sum_probs=234.3
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+++++..|++++.|++|++|+... ...+..+..|...|.+++|+++|++|
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~----------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l 112 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYT----------------------------TNKVHAIPLRSSWVMTCAYAPSGNYV 112 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTT----------------------------CCEEEEEECSSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCC----------------------------CCcceEeecCCccEEEEEECCCCCEE
Confidence 56677788999999999999999441 13345667788999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 232 CYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
++|+.||.|+|||+.++ ....+.+|.+.|.++.| .+++ .|++|+.||+|++||+.++. .
T Consensus 113 ~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~-~l~s~s~d~~i~~wd~~~~~--------------~ 176 (340)
T 1got_B 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN-QIVTSSGDTTCALWDIETGQ--------------Q 176 (340)
T ss_dssp EEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE-EETT-EEEEEETTSCEEEEETTTTE--------------E
T ss_pred EEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE-CCCC-cEEEEECCCcEEEEECCCCc--------------E
Confidence 99999999999999875 34578899999999999 6655 58999999999999999876 4
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
+..+..|...+.+++|+|++..+++++.++.+.+|+..... ....+.+|...|++++|+|
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~--------------------~~~~~~~h~~~v~~v~~~p 236 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--------------------CRQTFTGHESDINAICFFP 236 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS--------------------EEEEECCCSSCEEEEEECT
T ss_pred EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe--------------------eEEEEcCCcCCEEEEEEcC
Confidence 55667788899999999999877777778888888764321 1567788999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC-CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 387 WLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD-GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
++ .+|++|+.||+|+|||++++..+..+..+. ...|++++|+ |+|++|++++ .|+.|+|||+.++
T Consensus 237 ~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~l~~g~-~d~~i~vwd~~~~-------- 302 (340)
T 1got_B 237 NG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS----KSGRLLLAGY-DDFNCNVWDALKA-------- 302 (340)
T ss_dssp TS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC----TTSSEEEEEE-TTSEEEEEETTTC--------
T ss_pred CC-CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC----CCCCEEEEEC-CCCeEEEEEcccC--------
Confidence 98 899999999999999999999888876332 1269999999 9999999976 9999999999888
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.++..+.+|...+. +++|+++|.+|++|+.|+.|+|||
T Consensus 303 ----~~~~~~~~h~~~v~---------~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 303 ----DRAGVLAGHDNRVS---------CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ----CEEEEEECCSSCEE---------EEEECTTSSCEEEEETTSCEEEEC
T ss_pred ----cEeeEeecCCCcEE---------EEEEcCCCCEEEEEcCCccEEecC
Confidence 88999999987654 499999999999999999999996
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7e-32 Score=313.12 Aligned_cols=278 Identities=17% Similarity=0.204 Sum_probs=228.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.++|.+..|++++.||.|++|++. ....+..+..|...|.+++|++++++|
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l 70 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYE----------------------------TQVEVRSIQVTETPVRAGKFIARKNWI 70 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETT----------------------------TTEEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECC----------------------------CCceeEEeeccCCcEEEEEEeCCCCEE
Confidence 5667788899999999999999943 113456777899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|+|||+.++ .+..+.+|.+.|++|+| ++++.+|++|+.||+|++||+.++. .....+
T Consensus 71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~sgs~D~~v~lWd~~~~~-------------~~~~~~ 136 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQTF 136 (304)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CSSSSEEEEEETTSCEEEEEGGGTT-------------EEEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEE-cCCCCEEEEECCCCeEEEEECCCCc-------------chhhhh
Confidence 99999999999999987 47789999999999999 8999999999999999999998764 134567
Q ss_pred cCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec--C
Q 039790 311 ADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ--W 387 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp--d 387 (1395)
..|...+.+++|+|.+ ..+++++.++.+.+|+....... .....+|...|..+.|++ +
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-------------------FTLTTGQERGVNYVDYYPLPD 197 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS-------------------EEEECCCTTCEEEEEECCSTT
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc-------------------ceeccCCcCcEEEEEEEEcCC
Confidence 7888999999999965 45555555666666665332111 344456778899999987 4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+ .+|++|+.||+|+|||+++++++.++.+|.. .|.+++|+ |++.+|++++ .||+|+|||+.++
T Consensus 198 ~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~~~~~----p~~~~l~s~s-~Dg~i~iWd~~~~---------- 260 (304)
T 2ynn_A 198 K-PYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFH----PTLPIIISGS-EDGTLKIWNSSTY---------- 260 (304)
T ss_dssp C-CEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEC----SSSSEEEEEE-TTSCEEEEETTTC----------
T ss_pred C-CEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEEEEEC----CCCCEEEEEc-CCCeEEEEECCCC----------
Confidence 4 7999999999999999999999999999997 99999999 9999999976 9999999999988
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCC--EEEEEeCCCeEEEEEcCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL--FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~--~LaSgs~Dg~I~iWdl~~ 519 (1395)
++++++..+...+. +++++++|. +|++|+ ++.+.+|++..
T Consensus 261 --~~~~~~~~~~~~~~---------~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 261 --KVEKTLNVGLERSW---------CIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp --CEEEEECCSSSSEE---------EEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred --ceeeeccCCCccEE---------EEEECCCCCceEEEEec-CCceEEEEecc
Confidence 89999988766543 478777774 566666 45578888754
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=317.57 Aligned_cols=269 Identities=20% Similarity=0.209 Sum_probs=220.7
Q ss_pred cceeeeeCCCC-CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc----eEEeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 207 TPITKYISDPG-LVLGRQIAVNRNYICYGLKLGNIRILNIITAL----RSLLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 207 ~~i~~l~~h~~-~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~----~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
..+.++.+|.+ .|++++|+|+|++||+|+.||+|+|||+.++. .....+|.+.|.+++| ++++++|++|+.|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW-SPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEE-CTTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEE-CCCCCEEEEEECCCc
Confidence 46678889988 99999999999999999999999999998873 2234789999999999 899999999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|+|||+..+. ..++..+..|...|.+++|+|++..+++++.++.+.+|+.......
T Consensus 85 v~iw~~~~~~------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~------------ 140 (345)
T 3fm0_A 85 TCIWKKNQDD------------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY------------ 140 (345)
T ss_dssp EEEEEECCC-------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE------------
T ss_pred EEEEEccCCC------------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe------------
Confidence 9999998754 2245667788999999999999998888888888888876432211
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
..+..+.+|...|++++|+|++ .+|++|+.|++|++||++.+. ++.++.+|.+ .|++|+|+ |+|++|
T Consensus 141 -----~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~s----p~g~~l 209 (345)
T 3fm0_A 141 -----ECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWSLAFD----PSGQRL 209 (345)
T ss_dssp -----EEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEEC----TTSSEE
T ss_pred -----EEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEEEEEC----CCCCEE
Confidence 1156678899999999999998 899999999999999998874 5678999997 99999999 999999
Q ss_pred EEEecCCCeEEEEECCCCCCCC---CCCCcccccEEEEEec-cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEE
Q 039790 440 ITGGPLNRELKIWASAEEEGWL---LPSDIESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAI 515 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~---~~~~~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iW 515 (1395)
++++ .|++|+|||........ .......++|+.++.+ |...+ ..++|++++.+|++++.|+.|++|
T Consensus 210 ~s~s-~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------~~v~~~~~~~~l~s~~~d~~i~vw 279 (345)
T 3fm0_A 210 ASCS-DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI---------YDIAWCQLTGALATACGDDAIRVF 279 (345)
T ss_dssp EEEE-TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE---------EEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEEe-CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE---------EEEEEecCCCEEEEEeCCCeEEEE
Confidence 9977 99999999975432110 1112245677777776 44433 259999999999999999999999
Q ss_pred EcCCCC
Q 039790 516 HMDYGP 521 (1395)
Q Consensus 516 dl~~g~ 521 (1395)
++..+.
T Consensus 280 ~~~~~~ 285 (345)
T 3fm0_A 280 QEDPNS 285 (345)
T ss_dssp EECTTS
T ss_pred EeCCCC
Confidence 997654
No 16
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-32 Score=328.92 Aligned_cols=267 Identities=18% Similarity=0.268 Sum_probs=214.9
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.+..++.+|.+.|++++|+|++++|++|+.||+|+|||+.++ ....+.+|...|.+++| ++++++|++|+.|+.|+||
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~-s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAF-APNGQSVACGGLDSACSIF 135 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEE-CTTSSEEEECCSSSCCEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEE-CCCCCEEEEeeCCCcEEEE
Confidence 456789999999999999999999999999999999999887 47788999999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|+.+....... ......+.+|...+.++.|+|++...+++|+ ++.+.+|+. ..+..
T Consensus 136 ~~~~~~~~~~~-------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~-~~~~~--------------- 192 (380)
T 3iz6_a 136 NLSSQADRDGN-------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV-TTGQR--------------- 192 (380)
T ss_dssp ECCCCSSCCCS-------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT-TTCCE---------------
T ss_pred ECCCCccccCC-------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc-CCCcE---------------
Confidence 99864311100 0012345678888999999998765555555 555555554 33221
Q ss_pred cccceEEE-----cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 365 LINGVQLV-----GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-KSTPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 365 ~~~~~~~l-----~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~-sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
+..+ .+|...|.+++|++.++.+|++|+.||+|++||++ .+.++..+.+|.+ .|++|+|+ |+|.+
T Consensus 193 ----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~----p~~~~ 263 (380)
T 3iz6_a 193 ----ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-DINSVKFF----PDGQR 263 (380)
T ss_dssp ----EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS-CCCEEEEC----TTSSE
T ss_pred ----EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC-CeEEEEEe----cCCCe
Confidence 2222 57999999999988544899999999999999998 5688999999998 99999999 99999
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
|++++ .|++|+|||++++ .++..+..+...... ...+...++|+++|.+|++|+.||.|++||+.
T Consensus 264 l~s~s-~D~~i~lwd~~~~------------~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 264 FGTGS-DDGTCRLFDMRTG------------HQLQVYNREPDRNDN--ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp EEEEC-SSSCEEEEETTTT------------EEEEEECCCCSSSCC--SSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred EEEEc-CCCeEEEEECCCC------------cEEEEeccccccccc--ccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 99966 9999999999998 888888765432111 11234579999999999999999999999987
Q ss_pred CCC
Q 039790 519 YGP 521 (1395)
Q Consensus 519 ~g~ 521 (1395)
.++
T Consensus 329 ~~~ 331 (380)
T 3iz6_a 329 LAE 331 (380)
T ss_dssp TCC
T ss_pred CCc
Confidence 643
No 17
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-32 Score=329.73 Aligned_cols=281 Identities=16% Similarity=0.186 Sum_probs=229.6
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.|++..|++++.|++|++||.. ....+..+..|...|.+++|+|+|++|
T Consensus 72 ~~~sp~~~~l~s~s~D~~v~iWd~~----------------------------~~~~~~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 72 LDWTPEKNWIVSASQDGRLIVWNAL----------------------------TSQKTHAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp EEECTTSSCEEEEETTSEEEEEETT----------------------------TTEEEEEEECCCTTCCCCEECTTSSEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----------------------------CCccceEEecCCCCEEEEEECCCCCEE
Confidence 5667777889999999999999843 113456677899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccce
Q 039790 232 CYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
++|+.|+.|+|||+.+. ....+.+|.+.|.++.|++.++.+|++|+.||+|++||+.++.
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~------------ 191 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ------------ 191 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC------------
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc------------
Confidence 99999999999998753 3457889999999999944456789999999999999999887
Q ss_pred EEEEEEe-----cCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 304 VVAIQIL-----ADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 304 i~~l~~~-----~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
.+..+ ..|...+.+++|++ ++..+++++.++.+.+||...... .+..+.+|.+
T Consensus 192 --~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------------~~~~~~~h~~ 250 (380)
T 3iz6_a 192 --RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------------AVRTYHGHEG 250 (380)
T ss_dssp --EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-------------------CCEEECCCSS
T ss_pred --EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-------------------ceEEECCcCC
Confidence 23333 45778899999988 455555555566676666543222 1567889999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC------CCeeEEEEeecCCCCCcEEEEEecCCCeEEE
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG------HPVNCVTFLIGPHPQHIVLITGGPLNRELKI 451 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~I 451 (1395)
.|++++|+|++ .+|++|+.||+|+|||++++.++..+..+.. ..|++++|+ |+|++|++++ .||.|+|
T Consensus 251 ~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~l~~g~-~dg~i~v 324 (380)
T 3iz6_a 251 DINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS----ISGRLLFAGY-SNGDCYV 324 (380)
T ss_dssp CCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC----SSSSEEEEEC-TTSCEEE
T ss_pred CeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC----CCCCEEEEEE-CCCCEEE
Confidence 99999999998 8999999999999999999999998876532 148999999 9999999966 9999999
Q ss_pred EECCCCCCCCCCCCcccccEEEEE----eccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTL----ELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl----~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
||+.++ +++..+ .+|...+. +++|+++|.+|++|+.|+.|+||++..+
T Consensus 325 wd~~~~------------~~~~~~~~~~~~h~~~v~---------~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 325 WDTLLA------------EMVLNLGTLQNSHEGRIS---------CLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EETTTC------------CEEEEECCSCSSCCCCCC---------EEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EECCCC------------ceEEEEecccCCCCCceE---------EEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999887 777776 44554443 5999999999999999999999998753
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-31 Score=312.78 Aligned_cols=288 Identities=15% Similarity=0.162 Sum_probs=229.5
Q ss_pred ccCCCC-CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 152 PTLPPP-SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p-~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
+.+.+. +..|++++.|++|++|++... .. ..+.++..+.+|...|.+++|+++|++
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~--------~~---------------~~~~~~~~~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGD--------DQ---------------KFGVPVRSFKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEE--------TT---------------EEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCC--------Cc---------------cccccceEEeCCcccEEEEEECCCCCE
Confidence 344443 378999999999999993210 00 012456788999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|++|+.||+|+|||+.++. ...+.+|...|.+++| ++++.+|++|+.||+|++||+.. . ++..
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~D~~i~vwd~~~-~--------------~~~~ 143 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTIKG-Q--------------CLAT 143 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CTTSCEEEEEETTSCEEEEETTS-C--------------EEEE
T ss_pred EEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEE-cCCCCEEEEEeCCCeEEEEECCC-C--------------eEEE
Confidence 9999999999999999984 6789999999999999 89999999999999999999974 2 3455
Q ss_pred ecCCCCCccEEEEeCCCC------eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE
Q 039790 310 LADGDSVHPRVCWHPHKQ------EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~------~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla 383 (1395)
+..|...+.++.|+|... .+++++.++.+.+|+.... . ....+.+|...|++++
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~-------------------~~~~~~~h~~~v~~~~ 203 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-Q-------------------IEADFIGHNSNINTLT 203 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-E-------------------EEEEECCCCSCEEEEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-h-------------------hheeecCCCCcEEEEE
Confidence 667888899999998543 5666666677777765331 1 1456778999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
|+|++ .+|++|+.||+|+|||+++++++.++..+. .|.+++|+ |++.+|++++ ++.|++|++...
T Consensus 204 ~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~s----p~~~~la~~~--~~~i~v~~~~~~------ 268 (319)
T 3frx_A 204 ASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSAQD--EVFSLAFS----PNRYWLAAAT--ATGIKVFSLDPQ------ 268 (319)
T ss_dssp ECTTS-SEEEEEETTCEEEEEETTTTEEEEEEECCS--CEEEEEEC----SSSSEEEEEE--TTEEEEEEETTE------
T ss_pred EcCCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCC--cEEEEEEc----CCCCEEEEEc--CCCcEEEEeCcC------
Confidence 99998 899999999999999999999999998764 79999999 9999988855 567999999876
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.++..+..+.......+ ......++|++||.+|++|+.||.|++|++.++
T Consensus 269 ------~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 269 ------YLVDDLRPEFAGYSKAA-EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ------EEEEEECCCCTTCCGGG-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ------eeeeccCccccccccCc-CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 66666654322111111 112346999999999999999999999998753
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-31 Score=317.44 Aligned_cols=262 Identities=14% Similarity=0.155 Sum_probs=219.2
Q ss_pred ccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
......+.+|.+.|++++|++++++|++|+.||+|+|||..++ ....+..|...|.+++| ++++.+|++|+.|+.|++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~-sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY-APSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEE-CTTSSEEEEESTTSEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEE-CCCCCEEEEeeCCCCEEE
Confidence 4567889999999999999999999999999999999999887 46778889999999999 999999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|++......... . ....+..|...+.+++|++++..+++++.++.+.+|+.... .
T Consensus 133 ~~~~~~~~~~~~-----~---~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~---------------- 187 (354)
T 2pbi_B 133 YPLTFDKNENMA-----A---KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-Q---------------- 187 (354)
T ss_dssp EECCCCTTCCSG-----G---GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-C----------------
T ss_pred EEEecccccccc-----c---cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-e----------------
Confidence 999765421110 0 11233457888999999999988888888888888776432 1
Q ss_pred cccceEEEcccCCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 365 LINGVQLVGKHDGEITELSMCQWL-TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg-~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.+..+.+|...|.+++|+++. +.+|++|+.||+|++||+++++++..+.+|.. .|++++|+ |++.+|++++
T Consensus 188 ---~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~----p~~~~l~s~s 259 (354)
T 2pbi_B 188 ---LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRYY----PSGDAFASGS 259 (354)
T ss_dssp ---EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC----TTSSEEEEEE
T ss_pred ---EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CeEEEEEe----CCCCEEEEEe
Confidence 156778899999999998852 27999999999999999999999999999997 99999999 9999999977
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.|++|+|||++.+ +++..+..+... +....+.|+++|.+|++|+.|+.|++||+..+.
T Consensus 260 -~D~~v~lwd~~~~------------~~~~~~~~~~~~-------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 260 -DDATCRLYDLRAD------------REVAIYSKESII-------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp -TTSCEEEEETTTT------------EEEEEECCTTCC-------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred -CCCeEEEEECCCC------------cEEEEEcCCCcc-------cceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 9999999999887 666666543321 122468999999999999999999999997753
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-31 Score=312.44 Aligned_cols=248 Identities=17% Similarity=0.185 Sum_probs=214.9
Q ss_pred cceeeeeCCCCCEEEEEEecCC-CEEEEEEcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 207 TPITKYISDPGLVLGRQIAVNR-NYICYGLKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg-~~LasGs~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
....++.+|.+.|++++|++++ ++|++|+.||+|++||+... .+..+.+|...|.+++| ++++.+|++|+.|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~dg~~l~s~s~D 86 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-TADGAYALSASWD 86 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEE-CTTSSEEEEEETT
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEE-CCCCCEEEEEeCC
Confidence 4556789999999999999965 89999999999999998753 35678999999999999 8999999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|+|+|||+.+++ .+..+..|...|.+++|++++..+++++.++.+.+|+... .
T Consensus 87 ~~v~~wd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~----------- 139 (319)
T 3frx_A 87 KTLRLWDVATGE--------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--Q----------- 139 (319)
T ss_dssp SEEEEEETTTTE--------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--C-----------
T ss_pred CEEEEEECCCCC--------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C-----------
Confidence 999999999886 4566778899999999999998888888888888887632 1
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCC-----CcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWL-----TTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg-----~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
.+..+.+|...|.++.|+|.+ ..+|++|+.|++|++||++++++...+.+|.+ .|++++|+ |
T Consensus 140 --------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~s----p 206 (319)
T 3frx_A 140 --------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLTAS----P 206 (319)
T ss_dssp --------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS-CEEEEEEC----T
T ss_pred --------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC-cEEEEEEc----C
Confidence 156677899999999999853 25899999999999999999999999999998 99999999 9
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
+|++|++++ .|++|+|||+.++ +++.++..+.. + ..++|+++|.+|++++.+ .|++
T Consensus 207 ~g~~l~s~~-~dg~i~iwd~~~~------------~~~~~~~~~~~-v---------~~~~~sp~~~~la~~~~~-~i~v 262 (319)
T 3frx_A 207 DGTLIASAG-KDGEIMLWNLAAK------------KAMYTLSAQDE-V---------FSLAFSPNRYWLAAATAT-GIKV 262 (319)
T ss_dssp TSSEEEEEE-TTCEEEEEETTTT------------EEEEEEECCSC-E---------EEEEECSSSSEEEEEETT-EEEE
T ss_pred CCCEEEEEe-CCCeEEEEECCCC------------cEEEEecCCCc-E---------EEEEEcCCCCEEEEEcCC-CcEE
Confidence 999999977 9999999999988 88888876532 2 359999999999988754 5999
Q ss_pred EEcCC
Q 039790 515 IHMDY 519 (1395)
Q Consensus 515 Wdl~~ 519 (1395)
|++..
T Consensus 263 ~~~~~ 267 (319)
T 3frx_A 263 FSLDP 267 (319)
T ss_dssp EEETT
T ss_pred EEeCc
Confidence 99875
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.6e-31 Score=306.16 Aligned_cols=291 Identities=17% Similarity=0.287 Sum_probs=235.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.....+.+|.+.|++++|+++|++|++|+.||.|+|||..++ ....+.+|...|.+++| ++++++|++|+.||.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEE-cCCCCEEEEECCCCEEEEE
Confidence 455678899999999999999999999999999999999887 46788999999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++ .+..+..|...+.++.|+|++..+++++.++.+.+|+.....
T Consensus 93 d~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------------ 140 (312)
T 4ery_A 93 DVSSGK--------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK------------------ 140 (312)
T ss_dssp ETTTCC--------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC------------------
T ss_pred ECCCCc--------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE------------------
Confidence 999877 455667788899999999999988888888888888764321
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.+..+..|...|.+++|++++ .+|++|+.||.|++||+++++++..+..+....+.+++|+ |++++|++++ .
T Consensus 141 --~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~-~ 212 (312)
T 4ery_A 141 --CLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS----PNGKYILAAT-L 212 (312)
T ss_dssp --EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC----TTSSEEEEEE-T
T ss_pred --EEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEEC----CCCCEEEEEc-C
Confidence 156677899999999999998 8999999999999999999999888765444489999999 9999999977 9
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
|+.|+|||+.++ +++..+.+|...... .......+++.+|++|+.||.|++||+..+.
T Consensus 213 d~~i~iwd~~~~------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---- 270 (312)
T 4ery_A 213 DNTLKLWDYSKG------------KCLKTYTGHKNEKYC------IFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 270 (312)
T ss_dssp TTEEEEEETTTT------------EEEEEECSSCCSSSC------CCEEEECSSSCEEEECCTTSCEEEEETTTCC----
T ss_pred CCeEEEEECCCC------------cEEEEEEecCCceEE------EEEEEEeCCCcEEEEECCCCEEEEEECCCch----
Confidence 999999999988 889999887754322 1123445789999999999999999998753
Q ss_pred cceeeeeeeecc-ccEEEEecCCC-CcC--c--CCCCeEEEEEcC
Q 039790 526 TRMDYIAEFTVT-MPILSLTGTTT-DAS--P--DGEHIVQIYCVQ 564 (1395)
Q Consensus 526 ~~~~~i~~f~~~-~~ils~~~~~~-d~~--~--s~dg~V~lWdv~ 564 (1395)
.+..+..+ ..++.+..... ..+ + ++|+.|++|+.+
T Consensus 271 ----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 271 ----IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ----EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ----hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 23333332 23333333321 111 1 357888888753
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=317.73 Aligned_cols=295 Identities=15% Similarity=0.148 Sum_probs=230.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.++|++..|++++.|++|++|+... +. +.. ......+|...|.+++|+|+|++|
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~--~~--------~~~---------------~~~~~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEG--DS--------WIC---------------KSVLSEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEET--TE--------EEE---------------EEEECSSCSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCC--Cc--------cee---------------eeeeccccCCcEEEEEECCCCCEE
Confidence 66778889999999999999999431 00 000 112235799999999999999999
Q ss_pred EEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 232 CYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
++|+.||+|+|||+..+ +...+.+|.+.|.+++| ++++++|++|+.||+|++||+.++. ...++.
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~-sp~~~~l~s~s~D~~v~iwd~~~~~-----------~~~~~~ 144 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAW-APSGNLLATCSRDKSVWVWEVDEED-----------EYECVS 144 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEEECTTS-----------CEEEEE
T ss_pred EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEE-eCCCCEEEEEECCCeEEEEECCCCC-----------CeEEEE
Confidence 99999999999999876 36788999999999999 8999999999999999999998764 233566
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
.+..|...+.+++|+|++..+++++.++.+.+|+...... .....+.+|...|++++|+|+|
T Consensus 145 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~------------------~~~~~~~~h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW------------------VCCATLEGHESTVWSLAFDPSG 206 (345)
T ss_dssp EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE------------------EEEEEECCCSSCEEEEEECTTS
T ss_pred EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE------------------EEEEEecCCCCceEEEEECCCC
Confidence 7778889999999999999888888888888887533110 0145678999999999999998
Q ss_pred CcEEEEEeCCCcEEEEeCCC---------------CceeEEecC-CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 389 TTRLASASLDGTVKIWDDRK---------------STPLAVLRP-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 389 ~~~LaSgs~Dg~IrIWDl~s---------------g~~l~tl~~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+|++|+.||+|+|||... +.++.++.+ |.. .|++++|+ +++..|++++ .|+.|++|
T Consensus 207 -~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~----~~~~~l~s~~-~d~~i~vw 279 (345)
T 3fm0_A 207 -QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR-TIYDIAWC----QLTGALATAC-GDDAIRVF 279 (345)
T ss_dssp -SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS-CEEEEEEC----TTTCCEEEEE-TTSCEEEE
T ss_pred -CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCC-cEEEEEEe----cCCCEEEEEe-CCCeEEEE
Confidence 8999999999999999632 245666776 665 99999999 9999999977 99999999
Q ss_pred ECCCCCCCCCCCCcccccEE-EEEeccCcccccccccccceEEEEeCCC-CEEEEEeCCCeEEEEEcCCCC
Q 039790 453 ASAEEEGWLLPSDIESWKCT-QTLELKSSAELRLEDAFFNQVVALNRAG-LFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l-~tl~~h~~~i~~~~~~~~~~~l~~S~dg-~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+...+.... ....... ..+.+|...+ ..++|+|++ .+|++|+.||.|++|++..++
T Consensus 280 ~~~~~~~~~----~~~~~~~~~~~~~h~~~V---------~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 280 QEDPNSDPQ----QPTFSLTAHLHQAHSQDV---------NCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EECTTSCTT----SCCEEEEEEETTSSSSCE---------EEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EeCCCCCcc----eeeEEEEeeecccccCcE---------eEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 987651100 0001111 1123455443 359999988 599999999999999998754
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.3e-31 Score=316.14 Aligned_cols=275 Identities=14% Similarity=0.126 Sum_probs=232.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+++..|++++.|++|++||... ......+..|...|.+++|+|+|.+|
T Consensus 70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~----------------------------~~~~~~~~~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 70 MDWCKDKRRIVSSSQDGKVIVWDSFT----------------------------TNKEHAVTMPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT----------------------------CCEEEEEECSSSCCCEEEECTTSSEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCcceEEecCCCCEEEEEECCCCCEE
Confidence 56677778999999999999999431 12334455678899999999999999
Q ss_pred EEEEcCCeEEEEECCCC-------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 232 CYGLKLGNIRILNIITA-------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
++|+.|+.|++|++... ....+.+|.+.|.+++| ++++.+|++|+.||+|++||+.+++
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~t~s~D~~v~lwd~~~~~------------- 187 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF-TNSDMQILTASGDGTCALWDVESGQ------------- 187 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTCC-------------
T ss_pred EEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEE-eCCCCEEEEEeCCCcEEEEeCCCCe-------------
Confidence 99999999999998643 35677899999999999 8999999999999999999999887
Q ss_pred EEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
.+..+..|...+.++.|++. +..+++++.++.+.+|+... +. .+..+.+|...|+++
T Consensus 188 -~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~-------------------~~~~~~~h~~~v~~v 246 (354)
T 2pbi_B 188 -LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQ-------------------CVQAFETHESDVNSV 246 (354)
T ss_dssp -EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CC-------------------EEEEECCCSSCEEEE
T ss_pred -EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-Cc-------------------EEEEecCCCCCeEEE
Confidence 45666778888999999885 45666666677777777643 21 156778899999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWL 461 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~ 461 (1395)
+|+|++ .+|++|+.|++|++||++.+..+..+..+.. ..+.+++|+ |+|.+|++++ .|++|+|||+.++
T Consensus 247 ~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s----~~g~~l~~g~-~d~~i~vwd~~~~---- 316 (354)
T 2pbi_B 247 RYYPSG-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS----LSGRLLFAGY-NDYTINVWDVLKG---- 316 (354)
T ss_dssp EECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC----TTSSEEEEEE-TTSCEEEEETTTC----
T ss_pred EEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe----CCCCEEEEEE-CCCcEEEEECCCC----
Confidence 999998 8999999999999999999988887765431 268999999 9999999977 9999999999888
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
.++..+.+|...+. .++|+++|.+|++|+.|++|++|+
T Consensus 317 --------~~~~~l~~h~~~v~---------~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 --------SRVSILFGHENRVS---------TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp --------SEEEEECCCSSCEE---------EEEECTTSSCEEEEETTSEEEEEC
T ss_pred --------ceEEEEECCCCcEE---------EEEECCCCCEEEEEcCCCCEEecC
Confidence 88889998887654 499999999999999999999995
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.8e-32 Score=321.72 Aligned_cols=249 Identities=12% Similarity=0.068 Sum_probs=197.8
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-----eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-----RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-----~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.....+|...|.+++|++++++ ++|+.||+|+|||+.++. .....+|.+.|++|+| ++++++|++|+.||+|+
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~-spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV-FSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE-CSSSSEEEEEETTSCEE
T ss_pred ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE-CCCCCEEEEEeCCCeEE
Confidence 3445578899999999999865 567889999999998863 2345689999999999 89999999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
|||+.+++ .+..+..|...+++++|++++..+++++ .++.+.+|+... ++...
T Consensus 165 iwd~~~~~--------------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~----------- 218 (357)
T 4g56_B 165 VWDLSQKA--------------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPAT----------- 218 (357)
T ss_dssp EEETTTTE--------------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBC-----------
T ss_pred EEECCCCc--------------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceee-----------
Confidence 99999876 5566678889999999999987555555 455566655433 22100
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLIT 441 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s 441 (1395)
...+..|...|++++|+|+++.+|++|+.|+.|+|||+++++++.++.+|.+ .|++|+|+ |++. +|++
T Consensus 219 ------~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~l~~s----p~~~~~las 287 (357)
T 4g56_B 219 ------RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ-NITGLAYS----YHSSPFLAS 287 (357)
T ss_dssp ------BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS-CEEEEEEC----SSSSCCEEE
T ss_pred ------eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce-eEEEEEEc----CCCCCEEEE
Confidence 1123457788999999999778999999999999999999999999999997 99999999 8875 5666
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCCCeEEEEEcCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
++ .|++|+|||+.++ +++..+ +|...+. .++|+| ++.+|++++.|++|++|++..
T Consensus 288 gs-~D~~i~iwd~~~~------------~~~~~~-~H~~~V~---------~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 288 IS-EDCTVAVLDADFS------------EVFRDL-SHRDFVT---------GVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EE-TTSCEEEECTTSC------------EEEEEC-CCSSCEE---------EEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred Ee-CCCEEEEEECCCC------------cEeEEC-CCCCCEE---------EEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 55 9999999999887 777654 5665543 489997 899999999999999999975
No 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.4e-31 Score=363.87 Aligned_cols=396 Identities=11% Similarity=0.119 Sum_probs=292.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+++++..|++++.||.|++|+.. .+..+..+.+|.+.|.+++|+++|++|
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~----------------------------~~~~~~~~~~h~~~v~~~~~s~~~~~l 672 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAE----------------------------TGEKLLDIKAHEDEVLCCAFSSDDSYI 672 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETT----------------------------TCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECC----------------------------CCCEEEEeccCCCCEEEEEEecCCCEE
Confidence 5667777888888888888888843 123456777899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeC--CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAE--DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
++|+.||.|+|||+.++ .+..+.+|.+.|.+++| ++ ++.++++|+.||+|++||+.++. ++.
T Consensus 673 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~sg~~d~~v~vwd~~~~~--------------~~~ 737 (1249)
T 3sfz_A 673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF-TNKSNHLLLATGSNDFFLKLWDLNQKE--------------CRN 737 (1249)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CSSSSCCEEEEEETTSCEEEEETTSSS--------------EEE
T ss_pred EEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE-ecCCCceEEEEEeCCCeEEEEECCCcc--------------hhh
Confidence 99999999999999988 47788999999999999 66 56689999999999999999887 556
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc-------------------------ccccCCCCC-----
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG-------------------------ERFSAEEPL----- 358 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~-------------------------~~~s~~~~~----- 358 (1395)
.+..|...+.+++|+|++..+++++.++.+.+|+....... ..|+.++..
T Consensus 738 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1249)
T 3sfz_A 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817 (1249)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence 66788899999999999998888888888888876543211 112222111
Q ss_pred --ccCccccccc---eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCC
Q 039790 359 --KCPVDELING---VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 359 --~~~~~~~~~~---~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
.+.+|+...+ .....+|...|.+++|+|++ .++++++.||.|++||+.++.++..+.+|.+ .|++++|+
T Consensus 818 ~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~s---- 891 (1249)
T 3sfz_A 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHLS-WVHGVMFS---- 891 (1249)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEEEEECCCSS-CEEEEEEC----
T ss_pred CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeeecCCCcc-ceEEEEEC----
Confidence 1112222222 12234799999999999998 8999999999999999999999999999998 99999999
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCC-----------------------------------------------------
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGW----------------------------------------------------- 460 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~----------------------------------------------------- 460 (1395)
|+|.+|++++ .|+.|++||+.+....
T Consensus 892 pdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 892 PDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp TTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 9999999977 9999999997531000
Q ss_pred --------------CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc
Q 039790 461 --------------LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 461 --------------~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~ 526 (1395)
+..-+.....++..+.+|...+ ..++|+++|.+|++++.||.|++|++.++..
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v---------~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~---- 1037 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV---------RHIQFTADGKTLISSSEDSVIQVWNWQTGDY---- 1037 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC---------CCEEECSSSSCEEEECSSSBEEEEETTTTEE----
T ss_pred CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce---------EEEEECCCCCEEEEEcCCCEEEEEECCCCce----
Confidence 0000001122233333343333 3489999999999999999999999987532
Q ss_pred ceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCcee---eecccceEEecCCCCC--eecccCCCceEEEe
Q 039790 527 RMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQ---QYALDLSQCLPPPLEN--AELEKTDSNATRAF 599 (1395)
Q Consensus 527 ~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~---~~~~~~~~cl~~s~d~--l~~~~sd~~v~~iW 599 (1395)
..+..+ ...+..+.......+ .+.|+.|++||+.++... ..+.....|+.+++++ +++++ .++.+++|
T Consensus 1038 --~~~~~~--~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s-~d~~v~iw 1112 (1249)
T 3sfz_A 1038 --VFLQAH--QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS-ADKTAKIW 1112 (1249)
T ss_dssp --ECCBCC--SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC-CSSCCCEE
T ss_pred --EEEecC--CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc-CCCcEEEE
Confidence 111111 223333333320111 356899999999998753 3345556677777765 55555 44667799
Q ss_pred ecCCCCcceeeccCCC
Q 039790 600 DVANPDGSASLESSHG 615 (1395)
Q Consensus 600 D~~tg~~~~~l~g~~~ 615 (1395)
|+.++.++..+.++.+
T Consensus 1113 d~~~~~~~~~l~~h~~ 1128 (1249)
T 3sfz_A 1113 SFDLLSPLHELKGHNG 1128 (1249)
T ss_dssp CSSSSSCSBCCCCCSS
T ss_pred ECCCcceeeeeccCCC
Confidence 9999999999986554
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.7e-31 Score=310.79 Aligned_cols=290 Identities=15% Similarity=0.142 Sum_probs=216.8
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEc
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLK 236 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~ 236 (1395)
++..|++++.|++|++|++..... ....+.++..+.+|...|.+++|++++.+|++|+.
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~---------------------~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQ---------------------NGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCC---------------------SSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCc---------------------ccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 668999999999999999442110 00112445678899999999999999999999999
Q ss_pred CCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 237 LGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 237 DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
||+|+|||+.++ ....+.+|.+.|++++| ++++.+|++|+.||+|++||+.... .........|..
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~-sp~~~~l~s~~~d~~i~~wd~~~~~------------~~~~~~~~~~~~ 163 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAF-SPDNRQILSAGAEREIKLWNILGEC------------KFSSAEKENHSD 163 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSCEEEEEE-CSSTTEEEEEETTSCEEEEESSSCE------------EEECCTTTSCSS
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcEEEEEE-CCCCCEEEEEcCCCEEEEEeccCCc------------eeeeecccCCCc
Confidence 999999999987 46788999999999999 8999999999999999999997322 011111125677
Q ss_pred CccEEEEeCCC----------CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 316 VHPRVCWHPHK----------QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 316 ~v~~v~~sp~~----------~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
.+.+++|+|++ ..+++++.++.+.+|+. .. . ....+.+|...|++++|+
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~-~-------------------~~~~~~~h~~~v~~~~~s 222 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NF-Q-------------------IRYTFKAHESNVNHLSIS 222 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TT-E-------------------EEEEEECCSSCEEEEEEC
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CC-c-------------------eeEEEcCccccceEEEEC
Confidence 88899999987 45666666677766662 11 1 145677899999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPS 464 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~ 464 (1395)
|+| .+|++|+.||+|+|||++. +.+...+. +.. .|.+++|+ |++.+|++ | .|+.|+|||+.+++.
T Consensus 223 ~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~-~v~~v~~s----p~~~~la~-~-~d~~v~iw~~~~~~~----- 288 (343)
T 2xzm_R 223 PNG-KYIATGGKDKKLLIWDILNLTYPQREFD-AGS-TINQIAFN----PKLQWVAV-G-TDQGVKIFNLMTQSK----- 288 (343)
T ss_dssp TTS-SEEEEEETTCEEEEEESSCCSSCSEEEE-CSS-CEEEEEEC----SSSCEEEE-E-ESSCEEEEESSSCCS-----
T ss_pred CCC-CEEEEEcCCCeEEEEECCCCcccceeec-CCC-cEEEEEEC----CCCCEEEE-E-CCCCEEEEEeCCCCC-----
Confidence 998 8999999999999999954 45555554 333 79999999 99987765 5 688999999987611
Q ss_pred CcccccEEEEEeccCccccc--ccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 465 DIESWKCTQTLELKSSAELR--LEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 465 ~~~~~~~l~tl~~h~~~i~~--~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
..+.++..+...... ......+..++|+++|.+|++|+.||.|++|++.+|
T Consensus 289 -----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 289 -----APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp -----CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred -----CceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 111122211000000 000112346999999999999999999999998764
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.7e-31 Score=314.55 Aligned_cols=285 Identities=13% Similarity=0.085 Sum_probs=212.6
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC------------CceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT------------ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~------------~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
.|...|.+++|++||++|++|+ |+++|+||... +.......|...|.+++| +++ ..|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d-~~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW-VGE-RGILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE-ETT-TEEEEEETTSE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE-eCC-CeEEEEECCCE
Confidence 4667799999999999999887 67888887321 112233446778999999 777 47889999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|+|||+.+++... .......+|...|++++|+|++..+++++.++.+.+|+.... .
T Consensus 105 v~lWd~~~~~~~~----------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-~------------- 160 (344)
T 4gqb_B 105 VELWELDENETLI----------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-V------------- 160 (344)
T ss_dssp EEEEEECTTSSCE----------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-E-------------
T ss_pred EEEEeccCCCcee----------EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-c-------------
Confidence 9999999876211 112234578899999999999988888777888888876432 1
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC--CCCCCeeEEEEeecCCCCC-cE
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP--YDGHPVNCVTFLIGPHPQH-IV 438 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~--h~~~~V~sV~fs~~~~pdg-~~ 438 (1395)
.+..+.+|.+.|++++|++++..+|++|+.||+|+|||+++++++..+.. |.. .+.+++|+ |++ .+
T Consensus 161 ------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~----p~~~~~ 229 (344)
T 4gqb_B 161 ------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY-LPTSLAWH----PQQSEV 229 (344)
T ss_dssp ------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CC-CEEEEEEC----SSCTTE
T ss_pred ------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeec-cceeeeec----CCCCcc
Confidence 16778899999999999999867899999999999999999999988753 333 79999998 755 45
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC-CEEEEEeCCCeEEEEEc
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG-LFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg-~~LaSgs~Dg~I~iWdl 517 (1395)
|+++ +.||+|+|||++++ +++.++.+|...+. .++|+++| .+|++|+.|++|+|||+
T Consensus 230 l~sg-~~dg~v~~wd~~~~------------~~~~~~~~h~~~v~---------~v~fsp~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 230 FVFG-DENGTVSLVDTKST------------SCVLSSAVHSQCVT---------GLVFSPHSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp EEEE-ETTSEEEEEESCC--------------CCEEEECCSSCEE---------EEEECSSSSCCEEEEETTSCEEEECT
T ss_pred eEEe-ccCCcEEEEECCCC------------cEEEEEcCCCCCEE---------EEEEccCCCeEEEEEeCCCeEEEEEC
Confidence 6664 49999999999988 89999999987764 48999998 58999999999999998
Q ss_pred CCCCCCCCcceeeeeeeecc-ccEEEEecCCC-Cc-C--cCCCCeEEEEEcCCCc
Q 039790 518 DYGPNPASTRMDYIAEFTVT-MPILSLTGTTT-DA-S--PDGEHIVQIYCVQTQA 567 (1395)
Q Consensus 518 ~~g~~~~~~~~~~i~~f~~~-~~ils~~~~~~-d~-~--~s~dg~V~lWdv~t~~ 567 (1395)
.+++ + ..+.+| ..+.++..... .. + .+.|+.|++|++.+..
T Consensus 288 ~~~~------~---~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 288 SLSE------L---FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TCCE------E---EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCc------E---EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 7752 1 122222 23444433320 11 2 2457778888777653
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.7e-30 Score=299.71 Aligned_cols=278 Identities=14% Similarity=0.160 Sum_probs=232.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+.+..|++++.|+.|++|+... +..+..+.+|...|.+++|++++++|
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~----------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l 80 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYD----------------------------GKFEKTISGHKLGISDVAWSSDSNLL 80 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCC----------------------------cccchhhccCCCceEEEEEcCCCCEE
Confidence 55667778899999999999998431 13345667899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|+|||+.++ .+..+.+|...|.+++| ++++++|++|+.||+|++||+.+++ .+..+
T Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~--------------~~~~~ 145 (312)
T 4ery_A 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGK--------------CLKTL 145 (312)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CSSSSEEEEEETTSCEEEEETTTCC--------------EEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCE--------------EEEEe
Confidence 99999999999999987 47788999999999999 8999999999999999999999877 45566
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..|...+.+++|++++..+++++.++.+.+|+....... ......|...+.+++|+|++ .
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~-~ 205 (312)
T 4ery_A 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-------------------KTLIDDDNPPVSFVKFSPNG-K 205 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------------EEECCSSCCCEEEEEECTTS-S
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-------------------eEEeccCCCceEEEEECCCC-C
Confidence 778888999999999988888888888888876432110 12234567789999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCee--EEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVN--CVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~--sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
+|++++.||.|++||+++++++..+.+|.. .+. ...|+ .+++.+|++++ .||.|++||+.++
T Consensus 206 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~l~sg~-~dg~i~vwd~~~~----------- 269 (312)
T 4ery_A 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKN-EKYCIFANFS---VTGGKWIVSGS-EDNLVYIWNLQTK----------- 269 (312)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEECSSCC-SSSCCCEEEE---CSSSCEEEECC-TTSCEEEEETTTC-----------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEEecCC-ceEEEEEEEE---eCCCcEEEEEC-CCCEEEEEECCCc-----------
Confidence 999999999999999999999999999875 433 23444 15677888755 9999999999988
Q ss_pred ccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMD 518 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~ 518 (1395)
+++..+.+|...+. .++|++++.+|++++ .|+.|++|+.+
T Consensus 270 -~~~~~~~~h~~~v~---------~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 270 -EIVQKLQGHTDVVI---------STACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -CEEEEECCCSSCEE---------EEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred -hhhhhhhccCCcEE---------EEeecCcCCceEEEEccCCccEEEecCC
Confidence 89999999887654 489999999999987 69999999964
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.1e-30 Score=300.95 Aligned_cols=251 Identities=18% Similarity=0.199 Sum_probs=210.3
Q ss_pred cceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECC
Q 039790 207 TPITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D 279 (1395)
....+|+||.+.|++++|+|+ +++|++|+.||+|+|||+..+ ....+.+|...|.+++| ++++.+|++|+.|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~-s~dg~~l~s~~~d 107 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI-SSDGQFALSGSWD 107 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE-CTTSSEEEEEETT
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE-CCCCCEEEEEccc
Confidence 455679999999999999997 689999999999999999764 35678999999999999 8999999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|.|++|+..... .......+...+..+.+++.+..+++++.++.+.+|+.......
T Consensus 108 ~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~---------- 163 (340)
T 4aow_A 108 GTLRLWDLTTGT--------------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY---------- 163 (340)
T ss_dssp SEEEEEETTTTE--------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE----------
T ss_pred ccceEEeecccc--------------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE----------
Confidence 999999998765 34444556677778899999988888877888877765332111
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLT-TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~-~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
...+.+|...|.+++|++++. .++++++.|++|++||+++++++..+.+|.+ .|++|+|+ |++++
T Consensus 164 ---------~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s----~~~~~ 229 (340)
T 4aow_A 164 ---------TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG-YLNTVTVS----PDGSL 229 (340)
T ss_dssp ---------EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEC----TTSSE
T ss_pred ---------EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC-cEEEEEEC----CCCCE
Confidence 234567999999999998753 4789999999999999999999999999998 99999999 99999
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
|++++ .|++|+|||+++. +++..+..+.. ...++|++++.+++ ++.|+.|++||+.
T Consensus 230 l~s~s-~Dg~i~iwd~~~~------------~~~~~~~~~~~----------v~~~~~~~~~~~~~-~~~d~~i~iwd~~ 285 (340)
T 4aow_A 230 CASGG-KDGQAMLWDLNEG------------KHLYTLDGGDI----------INALCFSPNRYWLC-AATGPSIKIWDLE 285 (340)
T ss_dssp EEEEE-TTCEEEEEETTTT------------EEEEEEECSSC----------EEEEEECSSSSEEE-EEETTEEEEEETT
T ss_pred EEEEe-CCCeEEEEEeccC------------ceeeeecCCce----------EEeeecCCCCceee-ccCCCEEEEEECC
Confidence 99977 9999999999988 88888876542 23588999887664 5569999999987
Q ss_pred CC
Q 039790 519 YG 520 (1395)
Q Consensus 519 ~g 520 (1395)
.+
T Consensus 286 ~~ 287 (340)
T 4aow_A 286 GK 287 (340)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-30 Score=307.06 Aligned_cols=267 Identities=18% Similarity=0.280 Sum_probs=205.7
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEe-cc-CCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLL-RG-HTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l-~~-H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
..+..+.+|.+.|++++|+++ +||+|+.||.|+|||+..+ ....+ .+ |.+.|++|+| ++++.+|++|+.||+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~-sp~~~~las~s~D~~ 81 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW-RPHTSLLAAGSFDST 81 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEE-CTTSSEEEEEETTSC
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEE-CCCCCEEEEEeCCCc
Confidence 467789999999999999987 9999999999999999875 23444 44 9999999999 899999999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|+|||+...... ......+..+..|...|.+++|+|++..+++++.++.+.+|+....+..
T Consensus 82 v~iw~~~~~~~~-------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~------------ 142 (330)
T 2hes_X 82 VSIWAKEESADR-------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE------------ 142 (330)
T ss_dssp EEEEEC--------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC------------
T ss_pred EEEEEcccCcCc-------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC------------
Confidence 999999653200 0011245566788899999999999988888888888888876432210
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCCeeEEEEeecCCCC--Cc
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS--TPLAVLRPYDGHPVNCVTFLIGPHPQ--HI 437 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~h~~~~V~sV~fs~~~~pd--g~ 437 (1395)
...+..+.+|...|++++|+|++ .+|++|+.|++|+|||++.+ .++..+.+|.+ .|++++|+ |+ +.
T Consensus 143 ----~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~----~~~~~~ 212 (330)
T 2hes_X 143 ----YECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFD----KTEGVF 212 (330)
T ss_dssp ----CEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEEC----CSSSSC
T ss_pred ----eEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEEEEec----CCCCee
Confidence 01156778899999999999998 89999999999999999876 78899999998 99999999 77 66
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec-cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+|++++ .|++|+|||+..+.. .....+.+...+.. |...+ ..++|++++ +|++++.||.|++|+
T Consensus 213 ~l~s~s-~D~~v~iw~~~~~~~----~~~~~~~~~~~~~~~h~~~v---------~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 213 RLCSGS-DDSTVRVWKYMGDDE----DDQQEWVCEAILPDVHKRQV---------YNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp EEEEEE-TTSCEEEEEEEEECT----TSCEEEEEEEECCSCCSSCE---------EEEEECTTS-CEEEEETTSCEEEEE
T ss_pred EEEEEe-CCCeEEEEEecCCCc----cccceeEEeeecccccccce---------EEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 788866 999999999976411 01123355555554 44443 358888655 789999999999999
Q ss_pred cCCC
Q 039790 517 MDYG 520 (1395)
Q Consensus 517 l~~g 520 (1395)
+..+
T Consensus 278 ~~~~ 281 (330)
T 2hes_X 278 EVDG 281 (330)
T ss_dssp EETT
T ss_pred cCCC
Confidence 8654
No 31
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.7e-30 Score=305.03 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=206.7
Q ss_pred cceeeeeCCCCCEEEEEE-----ec-CCCEEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCE
Q 039790 207 TPITKYISDPGLVLGRQI-----AV-NRNYICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHL 272 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~-----Sp-dg~~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~ 272 (1395)
..+..+.+|.+.|++++| ++ ++++|++|+.||+|+|||+..+ ....+.+|...|++++| ++++.+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~-~~~~~~ 90 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL-SQENCF 90 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEE-CSSTTE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEE-CCCCCE
Confidence 456789999999999999 76 9999999999999999998753 35678999999999999 899999
Q ss_pred EEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccc
Q 039790 273 LASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERF 352 (1395)
Q Consensus 273 LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~ 352 (1395)
|++|+.||+|+|||+.+++ .+..+..|...|.+++|+|++..+++++.++.+.+|+...... +
T Consensus 91 l~s~s~D~~v~lwd~~~~~--------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~---~ 153 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGT--------------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK---F 153 (343)
T ss_dssp EEEEETTSEEEEEETTSSC--------------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE---E
T ss_pred EEEEcCCCcEEEEECCCCc--------------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce---e
Confidence 9999999999999999887 4556678889999999999999988888888888888642100 0
Q ss_pred cCCCCCccCccccccceEEEcccCCCeEEEEEecCCC---------cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCe
Q 039790 353 SAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT---------TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPV 423 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~---------~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V 423 (1395)
. .....+|...|.+++|+|++. .+|++++.||+|++|| ..+..+..+.+|.+ .|
T Consensus 154 ~---------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~-~v 216 (343)
T 2xzm_R 154 S---------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES-NV 216 (343)
T ss_dssp E---------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS-CE
T ss_pred e---------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc-cc
Confidence 0 011136889999999999862 5899999999999999 56778889999987 99
Q ss_pred eEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEE
Q 039790 424 NCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFL 503 (1395)
Q Consensus 424 ~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L 503 (1395)
++++|+ |+|++|++++ .|+.|+|||+.... .....+.. ... +..++|++++.+|
T Consensus 217 ~~~~~s----~~g~~l~sgs-~dg~v~iwd~~~~~-----------~~~~~~~~-~~~---------v~~v~~sp~~~~l 270 (343)
T 2xzm_R 217 NHLSIS----PNGKYIATGG-KDKKLLIWDILNLT-----------YPQREFDA-GST---------INQIAFNPKLQWV 270 (343)
T ss_dssp EEEEEC----TTSSEEEEEE-TTCEEEEEESSCCS-----------SCSEEEEC-SSC---------EEEEEECSSSCEE
T ss_pred eEEEEC----CCCCEEEEEc-CCCeEEEEECCCCc-----------ccceeecC-CCc---------EEEEEECCCCCEE
Confidence 999999 9999999977 99999999995430 23333432 222 2359999999988
Q ss_pred EEEeCCCeEEEEEcCCCC
Q 039790 504 LANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 504 aSgs~Dg~I~iWdl~~g~ 521 (1395)
+++ .|+.|++|++.++.
T Consensus 271 a~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 271 AVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp EEE-ESSCEEEEESSSCC
T ss_pred EEE-CCCCEEEEEeCCCC
Confidence 755 57789999998754
No 32
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-30 Score=311.92 Aligned_cols=299 Identities=15% Similarity=0.133 Sum_probs=221.7
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCee--eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCC
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHL--IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNR 228 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L--~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg 228 (1395)
.+.+++++..|++++ ++.+++|++. +|+.+ ...+...... ...........+...|.+++|+++|
T Consensus 69 ~v~fspdg~~la~g~-~~~v~i~~~~--~g~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 69 CVKFSNDGEYLATGC-NKTTQVYRVS--DGSLVARLSDDSAANKD----------PENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp EEEECTTSSEEEEEC-BSCEEEEETT--TCCEEEEECC---------------------------CCCCBEEEEEECTTS
T ss_pred EEEECCCCCEEEEEc-CCcEEEEEec--CCCEEEEecCccccccc----------cccccccccCCCceeEEEEEECCCC
Confidence 366788888888876 6889999954 45544 1111000000 0000011122345579999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 229 NYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
++|++|+.||.|+|||+.++. ...+.+|...|++++| ++++.+|++|+.||+|++||+.+++ +.
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~p~~~~l~s~s~d~~v~iwd~~~~~--------------~~ 200 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY-FPSGDKLVSGSGDRTVRIWDLRTGQ--------------CS 200 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTTE--------------EE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEE-cCCCCEEEEecCCCcEEEEECCCCe--------------eE
Confidence 999999999999999999874 6788999999999999 8999999999999999999999876 22
Q ss_pred EEecCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 308 QILADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
..+. +...+.+++|+| ++..+++++.++.+.+|+........ ..........+|...|++++|+|
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~-------------~~~~~~~~~~~h~~~v~~v~~~~ 266 (393)
T 1erj_A 201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE-------------RLDSENESGTGHKDSVYSVVFTR 266 (393)
T ss_dssp EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE-------------EEC------CCCSSCEEEEEECT
T ss_pred EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE-------------eecccccCCCCCCCCEEEEEECC
Confidence 2222 345688999999 56666666666667666653321100 00000122357999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC------------CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 387 WLTTRLASASLDGTVKIWDDRK------------STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 387 dg~~~LaSgs~Dg~IrIWDl~s------------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
+| .+|++|+.||+|++||+++ +.+..++.+|.+ .|.+++|+ +++.+|++++ .|+.|+|||+
T Consensus 267 ~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~----~~~~~l~sgs-~D~~v~iwd~ 339 (393)
T 1erj_A 267 DG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATT----QNDEYILSGS-KDRGVLFWDK 339 (393)
T ss_dssp TS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSS-CEEEEEEC----GGGCEEEEEE-TTSEEEEEET
T ss_pred CC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEEC----CCCCEEEEEe-CCCeEEEEEC
Confidence 98 8999999999999999975 356778889987 99999999 9999999976 9999999999
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC------CCCEEEEEeCCCeEEEEEcCC
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR------AGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~------dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.++ +++..+.+|...+.. ++|++ ++.+|++|+.|++|+||++..
T Consensus 340 ~~~------------~~~~~l~~h~~~v~~---------v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 340 KSG------------NPLLMLQGHRNSVIS---------VAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TTC------------CEEEEEECCSSCEEE---------EEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCC------------eEEEEECCCCCCEEE---------EEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 988 889999999876544 66654 789999999999999999864
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.1e-31 Score=313.62 Aligned_cols=250 Identities=15% Similarity=0.148 Sum_probs=197.0
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEc------CCeEEEEECCCCc-----eEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLK------LGNIRILNIITAL-----RSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~------DG~IrIWd~~~~~-----~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
...|...|++++|+|||++||+|+. ||.|++|+..++. .....+|...|++++| ++++. +++++.||
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-s~d~~-~l~~s~dg 115 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAW-VSEKG-ILVASDSG 115 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEE-ETTTE-EEEEETTS
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEE-cCCCC-EEEEECCC
Confidence 3469999999999999999999997 7889999987752 3355679999999999 78765 56788999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|+|||+.+++..... ......|...|.+++|+|++..+++++.++.+.+|+.... .
T Consensus 116 ~v~lWd~~~~~~~~~~----------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~------------ 172 (357)
T 4g56_B 116 AVELWEILEKESLLVN----------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-A------------ 172 (357)
T ss_dssp CEEEC--------CCC----------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-E------------
T ss_pred EEEEeeccccceeEEE----------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-c------------
Confidence 9999999987632211 1123467889999999999998888888888888876432 1
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec--CCCCCCeeEEEEeecCCCCCc-
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR--PYDGHPVNCVTFLIGPHPQHI- 437 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~--~h~~~~V~sV~fs~~~~pdg~- 437 (1395)
.+..+.+|.+.|++++|++++..+|++++.||+|+|||+++++++..+. .|.. .|++|+|+ |++.
T Consensus 173 -------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~-~v~~v~~s----p~~~~ 240 (357)
T 4g56_B 173 -------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT-IPTSVTWH----PEKDD 240 (357)
T ss_dssp -------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS-CEEEEEEC----TTSTT
T ss_pred -------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc-cccchhhh----hcccc
Confidence 1567788999999999999986789999999999999999998877654 4554 89999999 8765
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC-CEEEEEeCCCeEEEEE
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG-LFLLANAKKNAIYAIH 516 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg-~~LaSgs~Dg~I~iWd 516 (1395)
+|++ |+.|+.|+|||++++ ++++++.+|...+. .++|++++ .+|++|+.|++|+|||
T Consensus 241 ~la~-g~~d~~i~~wd~~~~------------~~~~~~~~~~~~v~---------~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 241 TFAC-GDETGNVSLVNIKNP------------DSAQTSAVHSQNIT---------GLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp EEEE-EESSSCEEEEESSCG------------GGCEEECCCSSCEE---------EEEECSSSSCCEEEEETTSCEEEEC
T ss_pred eEEE-eecccceeEEECCCC------------cEeEEEeccceeEE---------EEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 5555 559999999999988 88899998887654 48999987 5899999999999999
Q ss_pred cCCC
Q 039790 517 MDYG 520 (1395)
Q Consensus 517 l~~g 520 (1395)
+.++
T Consensus 299 ~~~~ 302 (357)
T 4g56_B 299 ADFS 302 (357)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9775
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-31 Score=318.88 Aligned_cols=292 Identities=14% Similarity=0.187 Sum_probs=230.2
Q ss_pred ccCCCCCC-eEEee----------cCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEE
Q 039790 152 PTLPPPSD-STVVI----------PSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVL 220 (1395)
Q Consensus 152 ~s~p~p~~-~Las~----------s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~ 220 (1395)
+.++|++. .|+++ +.|+.|++|++... .. ..++..+ .|...|.
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~--------------------~~-----~~~~~~~-~~~~~v~ 71 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA--------------------DS-----EKPIASL-QVDSKFN 71 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG--------------------GG-----CSCSCCC-CCSSCEE
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCC--------------------CC-----CcEEEEE-ecCCceE
Confidence 55666664 88888 88999999995411 00 0122223 4788999
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCC-----CceEEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCC
Q 039790 221 GRQIAVNRNYICYGLKLGNIRILNIIT-----ALRSLLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrIWd~~~-----~~~~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
+++|++++++|++|+.||.|+|||+.+ .....+.+|.+.|++++| +++ +.+|++|+.||+|++||+.++....
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF-NAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE-CSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEE-cCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 999999999999999999999999988 267788999999999999 776 8999999999999999999875110
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEE-EeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILML-AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
.. .....+.....|...+.+++|++++..++++ +.++.+.+|+... +.. +..+.
T Consensus 151 ~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~-------------------~~~~~ 205 (416)
T 2pm9_A 151 SN-----YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA-KKE-------------------VIHLS 205 (416)
T ss_dssp TT-----CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT-TEE-------------------EEEEC
T ss_pred cc-----ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC-CCc-------------------ceEEe
Confidence 00 0000111234577889999999995545555 4556666666543 211 33344
Q ss_pred cc------CCCeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCC-ceeEEec-CCCCCCeeEEEEeecCCC-CCcEEEE
Q 039790 374 KH------DGEITELSMCQWLTTRLASASLDG---TVKIWDDRKS-TPLAVLR-PYDGHPVNCVTFLIGPHP-QHIVLIT 441 (1395)
Q Consensus 374 ~h------~~~V~slafspdg~~~LaSgs~Dg---~IrIWDl~sg-~~l~tl~-~h~~~~V~sV~fs~~~~p-dg~~L~s 441 (1395)
.| ...|++++|+|++..+|++++.|+ .|++||++++ .++..+. +|.. .|++++|+ | ++.+|++
T Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s----~~~~~~l~s 280 (416)
T 2pm9_A 206 YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWC----HQDEHLLLS 280 (416)
T ss_dssp CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEEC----SSCSSCEEE
T ss_pred ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeC----CCCCCeEEE
Confidence 33 789999999999867999999999 9999999997 7788888 8987 99999999 8 8999999
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC-CEEEEEeCCCeEEEEEcCCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG-LFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg-~~LaSgs~Dg~I~iWdl~~g 520 (1395)
++ .|+.|+|||+.++ +++.++..|...+.. ++|++++ .+|++++.|+.|++|++..+
T Consensus 281 ~~-~dg~v~~wd~~~~------------~~~~~~~~~~~~v~~---------~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 281 SG-RDNTVLLWNPESA------------EQLSQFPARGNWCFK---------TKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp EE-SSSEEEEECSSSC------------CEEEEEECSSSCCCC---------EEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred Ee-CCCCEEEeeCCCC------------ccceeecCCCCceEE---------EEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 77 9999999999988 899999988876644 8999999 89999999999999999876
Q ss_pred CC
Q 039790 521 PN 522 (1395)
Q Consensus 521 ~~ 522 (1395)
..
T Consensus 339 ~~ 340 (416)
T 2pm9_A 339 TN 340 (416)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-30 Score=306.58 Aligned_cols=282 Identities=17% Similarity=0.212 Sum_probs=210.8
Q ss_pred CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeee-e-CCCCCEEEEEEecCCCEEEEEE
Q 039790 158 SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKY-I-SDPGLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 158 ~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l-~-~h~~~V~~va~Spdg~~LasGs 235 (1395)
+..|++++.|++|++|++.... ...+..+ . +|.+.|.+++|+|++++|++|+
T Consensus 24 ~~~las~~~D~~i~lw~~~~~~--------------------------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 24 QGILATGSTDRKIKLVSVKYDD--------------------------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp TTEEEEEESSSCEEEEECSSSC--------------------------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEcCCCEEEEEEecCCC--------------------------eEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 3489999999999999954110 0122233 2 3999999999999999999999
Q ss_pred cCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 236 KLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 236 ~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
.||+|+|||+... ....+.+|.+.|++++| ++++++|++|+.||+|+|||+..... ...++
T Consensus 78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-sp~g~~las~s~D~~v~iwd~~~~~~----------~~~~~ 146 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW-SNDGYYLATCSRDKSVWIWETDESGE----------EYECI 146 (330)
T ss_dssp TTSCEEEEEC-------CCCEEEEEEC----CEEEEEE-CTTSCEEEEEETTSCEEEEECCTTCC----------CCEEE
T ss_pred CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEE-CCCCCEEEEEeCCCEEEEEeccCCCC----------CeEEE
Confidence 9999999998532 35678899999999999 89999999999999999999954320 12345
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
..+..|...+.+++|+|++..+++++.++.+.+|+..... ...+..+.+|.+.|++++|+|+
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~------------------~~~~~~~~~h~~~v~~~~~~~~ 208 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD------------------WECVAVLNGHEGTVWSSDFDKT 208 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------------------EEEEEEECCCSSCEEEEEECCS
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC------------------eeEEEEccCCCCcEEEEEecCC
Confidence 6677888999999999999888887778888888753211 0115678899999999999998
Q ss_pred C-CcEEEEEeCCCcEEEEeCCCC--------ceeEEecC-CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 388 L-TTRLASASLDGTVKIWDDRKS--------TPLAVLRP-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 388 g-~~~LaSgs~Dg~IrIWDl~sg--------~~l~tl~~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+ ..+|++|+.|++|+|||++.+ .++..+.+ |.. .|++|+|+ +++ +|+++| .||+|+|||..++
T Consensus 209 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s----~~~-~l~s~~-~dg~v~iw~~~~~ 281 (330)
T 2hes_X 209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR-QVYNVAWG----FNG-LIASVG-ADGVLAVYEEVDG 281 (330)
T ss_dssp SSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS-CEEEEEEC----TTS-CEEEEE-TTSCEEEEEEETT
T ss_pred CCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc-ceEEEEEc----CCC-EEEEEe-CCCEEEEEEcCCC
Confidence 3 268999999999999998765 45666665 776 99999998 655 778866 9999999998765
Q ss_pred CCCCCCCCcccccEEEEE-eccCcccccccccccceEEEEeC--CCCEEEEEeCCCeEEEEEcCC
Q 039790 458 EGWLLPSDIESWKCTQTL-ELKSSAELRLEDAFFNQVVALNR--AGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl-~~h~~~i~~~~~~~~~~~l~~S~--dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.++++..+ ..|.. +....++|++ ++.+|++|+.||.|+||+++.
T Consensus 282 ----------~~~~~~~~~~~h~~--------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 282 ----------EWKVFAKRALCHGV--------YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ----------EEEEEEEESCTTTT--------SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ----------ceEEEecccccccc--------ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 11233222 33432 1223588988 799999999999999999864
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.9e-30 Score=307.96 Aligned_cols=296 Identities=15% Similarity=0.185 Sum_probs=230.4
Q ss_pred cccCCCCCC-eEEeecCCCCEEEEeCcC--CCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC
Q 039790 151 SPTLPPPSD-STVVIPSAPPVRLRSSKV--PKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN 227 (1395)
Q Consensus 151 ~~s~p~p~~-~Las~s~Dg~Vrlwd~~s--p~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd 227 (1395)
.+.+.+.+. .|++++.|+.|++|++.. .+|+.+..-.....+.... .......+|.+.|++++|+++
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPF----------ALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCC----------CCC------CBCEEEEEECTT
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccc----------cccccccCCCCceEEEEEcCC
Confidence 366677777 999999999999999510 1222110000111111110 011123347889999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 228 RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
+++|++|+.||.|+|||........+.+|...|.+++| ++++.+|++++.||.|++||+.++. .+
T Consensus 120 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~--------------~~ 184 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKW-NKDGTHIISMDVENVTILWNVISGT--------------VM 184 (425)
T ss_dssp SSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEE-CTTSSEEEEEETTCCEEEEETTTTE--------------EE
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEE-CCCCCEEEEEecCCeEEEEECCCCc--------------EE
Confidence 99999999999999999666678889999999999999 8999999999999999999998876 22
Q ss_pred EEecCCCCC---------------ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 308 QILADGDSV---------------HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 308 ~~~~~~~~~---------------v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
..+..+... +.+++|++++ .+++++.++.+.+|+..... ....+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~--------------------~~~~~ 243 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT--------------------PTGKL 243 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS--------------------CSEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc--------------------eeeee
Confidence 233333333 8899999875 57777778888888764321 14567
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+|...|++++|+|++ .+|++++.||.|++||+++++++..+.+|.. .|.+++|+ |++ +|++++ .|+.|++|
T Consensus 244 ~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~----~~~-~l~~~~-~d~~i~i~ 315 (425)
T 1r5m_A 244 IGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWV----GDD-KVISCS-MDGSVRLW 315 (425)
T ss_dssp CCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSS-CEEEEEEE----TTT-EEEEEE-TTSEEEEE
T ss_pred ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCc-cEEEEEEC----CCC-EEEEEe-CCCcEEEE
Confidence 7899999999999998 7999999999999999999999999999987 99999999 888 888766 99999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
|+.++ +++..+..|...+. .++|+++|.+|++++.||.|++|++..+.
T Consensus 316 d~~~~------------~~~~~~~~~~~~i~---------~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 316 SLKQN------------TLLALSIVDGVPIF---------AGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ETTTT------------EEEEEEECTTCCEE---------EEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred ECCCC------------cEeEecccCCccEE---------EEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99988 88888888776543 48999999999999999999999997643
No 37
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.98 E-value=4.1e-30 Score=309.58 Aligned_cols=256 Identities=16% Similarity=0.238 Sum_probs=202.8
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCC------------------CCeEEEEEeeCCCCEEE
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHT------------------QRVTDMAFFAEDVHLLA 274 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~------------------~~V~slaf~s~dg~~La 274 (1395)
+|.+.|.|++|+|||++||+|+ ++.++||++.++. +..+.+|. ..|.+++| ++++++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-SPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE-CTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE-CCCCCEEE
Confidence 5999999999999999999987 6899999999874 44555443 24999999 89999999
Q ss_pred EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 275 SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 275 Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
+|+.||+|+|||+.+++ .+..+..|...|.+++|+|++..+++++.++.+.+|+.... ..
T Consensus 140 s~~~d~~i~iwd~~~~~--------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~-~~----- 199 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRK--------------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QC----- 199 (393)
T ss_dssp EEETTSCEEEEETTTTE--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EE-----
T ss_pred EEcCCCeEEEEECCCCc--------------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-ee-----
Confidence 99999999999999876 45567788899999999999998888777877777776431 11
Q ss_pred CCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-------cCCCCCCeeEEE
Q 039790 355 EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-------RPYDGHPVNCVT 427 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-------~~h~~~~V~sV~ 427 (1395)
...+ .|...+.+++|+|.++.+|++|+.||+|+|||++++.++..+ .+|.+ .|++|+
T Consensus 200 --------------~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~ 263 (393)
T 1erj_A 200 --------------SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVV 263 (393)
T ss_dssp --------------EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEE
T ss_pred --------------EEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEE
Confidence 2233 366789999999933389999999999999999999988877 57887 999999
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|+ |+|++|++++ .|++|+|||+++..............|..++.+|...+. .++|++++.+|++|+
T Consensus 264 ~~----~~g~~l~s~s-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 264 FT----RDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL---------SVATTQNDEYILSGS 329 (393)
T ss_dssp EC----TTSSEEEEEE-TTSEEEEEEC---------------CEEEEEECCSSCEE---------EEEECGGGCEEEEEE
T ss_pred EC----CCCCEEEEEe-CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEE---------EEEECCCCCEEEEEe
Confidence 99 9999999976 999999999986521111111123467778888876543 489999999999999
Q ss_pred CCCeEEEEEcCCCC
Q 039790 508 KKNAIYAIHMDYGP 521 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~ 521 (1395)
.|+.|++||+.++.
T Consensus 330 ~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 330 KDRGVLFWDKKSGN 343 (393)
T ss_dssp TTSEEEEEETTTCC
T ss_pred CCCeEEEEECCCCe
Confidence 99999999998754
No 38
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=3.4e-30 Score=297.90 Aligned_cols=257 Identities=18% Similarity=0.217 Sum_probs=203.3
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEE
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFI 284 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~I 284 (1395)
+..+.+|.+.|++++|+++|++||+|+.||+|+|||+.++ .+..+.+|.+.|++++|+++ ++++|++|+.||+|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 3567889999999999999999999999999999999753 56789999999999999333 4899999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
||+.++... .+..+..|...+.+++|+|+ +..+++++.++.+.+|+.......
T Consensus 82 Wd~~~~~~~------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~------------- 136 (297)
T 2pm7_B 82 WKEENGRWS------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT------------- 136 (297)
T ss_dssp EEBSSSCBC------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-------------
T ss_pred EEcCCCceE------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-------------
Confidence 999876411 12344567888999999997 666666666777777766432110
Q ss_pred cccccceEEEcccCCCeEEEEEecCC------------CcEEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCCeeEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWL------------TTRLASASLDGTVKIWDDRKST----PLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg------------~~~LaSgs~Dg~IrIWDl~sg~----~l~tl~~h~~~~V~sV 426 (1395)
....+.+|...|++++|+|++ +.+|++|+.|++|+|||++++. ++.++.+|.+ .|++|
T Consensus 137 -----~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v 210 (297)
T 2pm7_B 137 -----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDV 210 (297)
T ss_dssp -----CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEE
T ss_pred -----eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-ceEEE
Confidence 034567899999999999973 2699999999999999998876 6778999997 99999
Q ss_pred EEeecCCCCC---cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEE--eccCcccccccccccceEEEEeCCCC
Q 039790 427 TFLIGPHPQH---IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL--ELKSSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 427 ~fs~~~~pdg---~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl--~~h~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
+|+ |++ .+|++++ .|++|+|||+.+..+ . .....+ ..|... ...++|+++|.
T Consensus 211 ~~s----p~~~~~~~las~s-~D~~v~iWd~~~~~~--------~-~~~~~~~~~~~~~~---------v~~~~~s~~g~ 267 (297)
T 2pm7_B 211 AWS----PTVLLRSYMASVS-QDRTCIIWTQDNEQG--------P-WKKTLLKEEKFPDV---------LWRASWSLSGN 267 (297)
T ss_dssp EEC----CCCSSSEEEEEEE-TTSCEEEEEESSTTS--------C-CEEEESSSSCCSSC---------EEEEEECSSSC
T ss_pred EEC----CCCCCceEEEEEE-CCCcEEEEEeCCCCC--------c-cceeeeecccCCCc---------EEEEEECCCCC
Confidence 999 874 7888866 999999999976411 0 111222 122222 23689999999
Q ss_pred EEEEEeCCCeEEEEEcCC
Q 039790 502 FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 502 ~LaSgs~Dg~I~iWdl~~ 519 (1395)
+|++++.|+.|+||+...
T Consensus 268 ~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 268 VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEEETTSCEEEEEECT
T ss_pred EEEEEcCCCcEEEEEECC
Confidence 999999999999999864
No 39
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-30 Score=341.65 Aligned_cols=254 Identities=10% Similarity=0.129 Sum_probs=176.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.|++..||+|+.||+|++|+... + ..+.. ..|...|.+++|++ |++|
T Consensus 23 lafspdg~~lAsgs~Dg~I~lw~~~~--~--------------------------~~~~~-~~~~~~V~~l~fsp-g~~L 72 (902)
T 2oaj_A 23 AAFDFTQNLLAIATVTGEVHIYGQQQ--V--------------------------EVVIK-LEDRSAIKEMRFVK-GIYL 72 (902)
T ss_dssp EEEETTTTEEEEEETTSEEEEECSTT--C--------------------------EEEEE-CSSCCCEEEEEEET-TTEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCC--c--------------------------EEEEE-cCCCCCEEEEEEcC-CCEE
Confidence 66677788999999999999998320 0 11112 23678999999999 8899
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE--
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ-- 308 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~-- 308 (1395)
++|+.|++|+|||+.++. +..+. |.+.|++++| ++++++|++|+.||+|++||+.++.+ ..+.
T Consensus 73 ~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~-sp~g~~l~sgs~dg~V~lwd~~~~~~------------~~~~i~ 138 (902)
T 2oaj_A 73 VVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDT-DASLDWMLIGLQNGSMIVYDIDRDQL------------SSFKLD 138 (902)
T ss_dssp EEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEEC-CTTCSEEEEEETTSCEEEEETTTTEE------------EEEEEC
T ss_pred EEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEE-CCCCCEEEEEcCCCcEEEEECCCCcc------------ccceec
Confidence 999999999999999874 44554 7789999999 89999999999999999999997651 0111
Q ss_pred -------EecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcc-ccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 309 -------ILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKG-ERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 309 -------~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
....|...|.+++|+|++..++++|.+++.++|+. ..+.. ..+............ .. .....+|...|+
T Consensus 139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~-~~~~~~~~~~~~~~~g~~~~~-~~-~~~~~~h~~~V~ 215 (902)
T 2oaj_A 139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSL-VENEIKQSFIYELPPFAPGGD-FS-EKTNEKRTPKVI 215 (902)
T ss_dssp CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEET-TTTEEEEEECCCBCTTCCCST-TC-CCTTSCBCCCEE
T ss_pred cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEEC-CCCceEEEEecccCCcCCCcc-cc-cccccccCCCeE
Confidence 12457788999999998765666666666565554 33221 001000000000000 00 001123568899
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE--ec---CC-------------CCCCeeEEEEeecCCCCCcEEEEE
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV--LR---PY-------------DGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t--l~---~h-------------~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
+++|+|+| .+|++|+.||+|+|||+++++++.. +. +| .+ .|++|+|++...|++..++++
T Consensus 216 ~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~-~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 216 QSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAA-KISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCC-EEEEEEEEECSSTTEEEEEEE
T ss_pred EEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccC-CeeEEEEEecCCCCCCEEEEe
Confidence 99999998 8999999999999999999988764 31 23 33 799999974434665444444
Q ss_pred ecCC-----CeEEEEEC
Q 039790 443 GPLN-----RELKIWAS 454 (1395)
Q Consensus 443 Gs~D-----g~I~IWDl 454 (1395)
|+.| +.|++|++
T Consensus 294 g~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EECSTTSSCCCEEEEEE
T ss_pred CCCCCCCCCceEEEEec
Confidence 4354 37888884
No 40
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=2.9e-29 Score=329.57 Aligned_cols=366 Identities=15% Similarity=0.127 Sum_probs=267.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.++|++..|++++.||.|++|+.. .+..+..+.+|.+.|.+++|++++++|
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~----------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l 70 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYE----------------------------TQVEVRSIQVTETPVRAGKFIARKNWI 70 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETT----------------------------TTEEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECC----------------------------CCceEEEEecCCCcEEEEEEeCCCCEE
Confidence 5566677888888888888888833 124556778899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|+|||+.++. ...+.+|.+.|++++| ++++.+|++|+.||+|++||+.++. .....+
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~-------------~~~~~~ 136 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQTF 136 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CSSSSEEEEEETTSEEEEEEGGGTS-------------EEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEE-eCCCCEEEEEcCCCEEEEEECCCCc-------------eEEEEE
Confidence 999999999999999874 6788999999999999 8999999999999999999998763 144566
Q ss_pred cCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec--C
Q 039790 311 ADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ--W 387 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp--d 387 (1395)
..|...+.+++|+| ++..+++++.++.+.+|+....... ......|...|.+++|+| +
T Consensus 137 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-------------------FTLTTGQERGVNYVDYYPLPD 197 (814)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS-------------------EEEECCCTTCCCEEEECCSTT
T ss_pred cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce-------------------eEEecCCCCCEEEEEEEECCC
Confidence 67888999999999 5656666666677777765332110 233344558999999999 7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+ .+|++|+.||.|++||++++.++.++.+|.+ .|.+++|+ |+|.+|++++ .||.|++||+.+++
T Consensus 198 ~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~l~~~~-~dg~v~vwd~~~~~--------- 261 (814)
T 3mkq_A 198 K-PYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFH----PTLPIIISGS-EDGTLKIWNSSTYK--------- 261 (814)
T ss_dssp C-CEEEEECTTSEEEEEETTTTEEEEEEECCSS-CEEEEEEC----SSSSEEEEEE-TTSCEEEEETTTCS---------
T ss_pred C-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEc----CCCCEEEEEe-CCCeEEEEECCCCc---------
Confidence 7 7999999999999999999999999999987 99999999 9999999977 99999999998762
Q ss_pred cccEEEEEeccCccccc---------------------------------------------------------------
Q 039790 468 SWKCTQTLELKSSAELR--------------------------------------------------------------- 484 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~--------------------------------------------------------------- 484 (1395)
++..+..+...+..
T Consensus 262 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (814)
T 3mkq_A 262 ---VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEE 338 (814)
T ss_dssp ---EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCC
T ss_pred ---EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccc
Confidence 22111111110000
Q ss_pred --------------ccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCc
Q 039790 485 --------------LEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDA 550 (1395)
Q Consensus 485 --------------~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~ 550 (1395)
.........++|+++|.+|++++ |+.+++|++.... . ...+....+.|.... ..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~------~----~~~~~i~~~~~spdg-~~ 406 (814)
T 3mkq_A 339 VEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR------N----KAFGKCQDFVWGPDS-NS 406 (814)
T ss_dssp CCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE------E----EEEEECSEEEECTTS-SC
T ss_pred cccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc------c----cCCCceEEEEEeCCC-Ce
Confidence 00111234688888888888877 7888888864311 0 011112223333222 11
Q ss_pred C--cCCCCeEEEEEcCCCceeeecccceEEecCCCCC----eecccCCCceEEEeecCCCCcceeeccCC
Q 039790 551 S--PDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLEN----AELEKTDSNATRAFDVANPDGSASLESSH 614 (1395)
Q Consensus 551 ~--~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~----l~~~~sd~~v~~iWD~~tg~~~~~l~g~~ 614 (1395)
+ .+.++.|++|+.-.+ +.....|+.+++++ ..+...+++.+++||+.+|..+..+.++.
T Consensus 407 la~~~~~g~v~l~~~~~~-----~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~ 471 (814)
T 3mkq_A 407 YALIDETGQIKYYKNFKE-----VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNA 471 (814)
T ss_dssp EEEECTTCCEEEEETTEE-----CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCE
T ss_pred EEEEeCCCcEEEEECCCC-----ccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCC
Confidence 2 356788999964332 33344577788874 33333456788899999999988888433
No 41
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-29 Score=291.94 Aligned_cols=259 Identities=11% Similarity=0.119 Sum_probs=215.1
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
....+.+|.+.|++++|+++|++|++|+.||.|+|||+.++ ....+.+|.+.|.+++| ++++++|++++.||+|++||
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV-DCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTTEEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEE-cCCCCEEEEEeCCCeEEEEE
Confidence 34568899999999999999999999999999999999887 47788999999999999 88999999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-----CeEEEEEcCCCCccccccCCCCCccC
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-----NRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-----~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
+.+++ .+..+. +...+.+++|++++..+++++.+ +.+.+|+.........+.
T Consensus 103 ~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-------- 159 (369)
T 3zwl_B 103 VSNGQ--------------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT-------- 159 (369)
T ss_dssp TTTCC--------------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE--------
T ss_pred CCCCc--------------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec--------
Confidence 99877 233333 67789999999999988888877 888888775432211100
Q ss_pred ccccccceEEEcccCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcE
Q 039790 362 VDELINGVQLVGKHDG--EITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~--~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
.........+..|.+ .+.+++|++++ .+|++++.||.|++||+++ +..+..+..|.+ .|.+++|+ |++.+
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~ 232 (369)
T 3zwl_B 160 -KVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK-SISDMQFS----PDLTY 232 (369)
T ss_dssp -EECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSS-CEEEEEEC----TTSSE
T ss_pred -ccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCC-ceeEEEEC----CCCCE
Confidence 001112455566777 99999999998 8999999999999999999 788999999987 99999999 99999
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC--------
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN-------- 510 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg-------- 510 (1395)
|++++ .|+.|++||+.++ +++..+... ..+ ..+.|++++.++++++.++
T Consensus 233 l~~~~-~d~~i~v~d~~~~------------~~~~~~~~~-~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 233 FITSS-RDTNSFLVDVSTL------------QVLKKYETD-CPL---------NTAVITPLKEFIILGGGQEAKDVTTTS 289 (369)
T ss_dssp EEEEE-TTSEEEEEETTTC------------CEEEEEECS-SCE---------EEEEECSSSSEEEEEECCC--------
T ss_pred EEEec-CCceEEEEECCCC------------ceeeeecCC-CCc---------eeEEecCCCceEEEeecCCCceEEEEe
Confidence 99977 9999999999988 888888733 222 3589999999999999988
Q ss_pred ------eEEEEEcCCC
Q 039790 511 ------AIYAIHMDYG 520 (1395)
Q Consensus 511 ------~I~iWdl~~g 520 (1395)
.|++||+..+
T Consensus 290 ~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 290 ANEGKFEARFYHKIFE 305 (369)
T ss_dssp -----CEEEEEETTTC
T ss_pred cCCCcceeEEEecCCC
Confidence 6777777664
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=6.1e-29 Score=290.01 Aligned_cols=292 Identities=17% Similarity=0.176 Sum_probs=224.6
Q ss_pred ccCCCC-CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 152 PTLPPP-SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p-~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
+.+.|. +..|+|+|.|++|++|++.... .....+...+.+|...|.+++|+++|++
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~-----------------------~~~~~~~~~l~~h~~~V~~~~~s~dg~~ 100 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDE-----------------------TNYGIPQRALRGHSHFVSDVVISSDGQF 100 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSS-----------------------SCSEEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCC-----------------------cccceeeEEEeCCCCCEEEEEECCCCCE
Confidence 566665 5789999999999999944210 0112345678899999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|++|+.||.|++|+..... ......+...+..+.| .+++.+|++|+.||.+++||+.... .....
T Consensus 101 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~s~s~d~~~~~~d~~~~~-------------~~~~~ 166 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF-SSDNRQIVSGSRDKTIKLWNTLGVC-------------KYTVQ 166 (340)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CTTSSCEEEEETTSCEEEECTTSCE-------------EEEEC
T ss_pred EEEEcccccceEEeecccceeeeecCCCCceeEEEE-eecCccceeecCCCeEEEEEeCCCc-------------eEEEE
Confidence 9999999999999999874 5566778888999998 8899999999999999999987643 12233
Q ss_pred ecCCCCCccEEEEeCCCC-eEEEE-EeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 310 LADGDSVHPRVCWHPHKQ-EILML-AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~-~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
...+...+..++|++++. .++++ +.++.+.+|+... +. ....+.+|.+.|++++|+|+
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~-------------------~~~~~~~h~~~v~~~~~s~~ 226 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CK-------------------LKTNHIGHTGYLNTVTVSPD 226 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TE-------------------EEEEECCCSSCEEEEEECTT
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-Cc-------------------eeeEecCCCCcEEEEEECCC
Confidence 456778888999988764 34444 4455566665432 21 15667889999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+ .+|++|+.||+|+|||+++++++..+.++. .|.+++|+ |++.++ +++ .|+.|+|||++++
T Consensus 227 ~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~----~~~~~~-~~~-~d~~i~iwd~~~~---------- 287 (340)
T 4aow_A 227 G-SLCASGGKDGQAMLWDLNEGKHLYTLDGGD--IINALCFS----PNRYWL-CAA-TGPSIKIWDLEGK---------- 287 (340)
T ss_dssp S-SEEEEEETTCEEEEEETTTTEEEEEEECSS--CEEEEEEC----SSSSEE-EEE-ETTEEEEEETTTT----------
T ss_pred C-CEEEEEeCCCeEEEEEeccCceeeeecCCc--eEEeeecC----CCCcee-ecc-CCCEEEEEECCCC----------
Confidence 8 899999999999999999999999998775 69999998 777655 445 7999999999887
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.++..+..+............+..++|+++|.+|++|+.||.|+|||+.+|.
T Consensus 288 --~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 288 --IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp --EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred --eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 6666665432211111111223468999999999999999999999999874
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=304.26 Aligned_cols=315 Identities=14% Similarity=0.181 Sum_probs=242.6
Q ss_pred eCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEEC----CCCc-------eEEecc----------CCCCeEEEEEeeCCC
Q 039790 213 ISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNI----ITAL-------RSLLRG----------HTQRVTDMAFFAEDV 270 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~----~~~~-------~~~l~~----------H~~~V~slaf~s~dg 270 (1395)
..|.+.|++++|+|+|+ +||+|+.||.|+|||+ .++. ...+.. |.+.|++++| ++++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW-SHDG 120 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE-CTTS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE-cCCC
Confidence 44668999999999999 9999999999999999 7765 233333 6889999999 8999
Q ss_pred CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccc
Q 039790 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGE 350 (1395)
Q Consensus 271 ~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~ 350 (1395)
.+|++|+.||.|++|| .++. .+..+..|...+.+++|++++..+++++.++.+.+|+......
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-- 183 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGA--------------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-- 183 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSC--------------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE--
T ss_pred CEEEEEeCCCeEEEEe-CCCC--------------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE--
Confidence 9999999999999999 4444 3455667889999999999999888888888888888743221
Q ss_pred cccCCCCCccCccccccceEEEcccCCC---------------eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe
Q 039790 351 RFSAEEPLKCPVDELINGVQLVGKHDGE---------------ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL 415 (1395)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~l~~h~~~---------------V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl 415 (1395)
+..+..|... +.+++|++++ .+++++.||.|++||+++++++..+
T Consensus 184 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~ 243 (425)
T 1r5m_A 184 ------------------MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKL 243 (425)
T ss_dssp ------------------EEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEE
T ss_pred ------------------EEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeee
Confidence 2333334443 9999999975 7899999999999999999999999
Q ss_pred cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 416 RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
.+|.+ .|.+++|+ |++++|++++ .|+.|++||+.++ +++..+..|...+. .+.
T Consensus 244 ~~~~~-~i~~~~~~----~~~~~l~~~~-~d~~i~i~d~~~~------------~~~~~~~~~~~~i~---------~~~ 296 (425)
T 1r5m_A 244 IGHHG-PISVLEFN----DTNKLLLSAS-DDGTLRIWHGGNG------------NSQNCFYGHSQSIV---------SAS 296 (425)
T ss_dssp CCCSS-CEEEEEEE----TTTTEEEEEE-TTSCEEEECSSSB------------SCSEEECCCSSCEE---------EEE
T ss_pred ccCCC-ceEEEEEC----CCCCEEEEEc-CCCEEEEEECCCC------------ccceEecCCCccEE---------EEE
Confidence 99987 99999999 9999999977 9999999999887 77888887776543 489
Q ss_pred EeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeecc-ccEEEEecCCC-CcC--cCCCCeEEEEEcCCCc----
Q 039790 496 LNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVT-MPILSLTGTTT-DAS--PDGEHIVQIYCVQTQA---- 567 (1395)
Q Consensus 496 ~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~-~~ils~~~~~~-d~~--~s~dg~V~lWdv~t~~---- 567 (1395)
|++++ +|++++.|+.|++||+..+. .+..+..+ .++..+..... ..+ .+.|+.|+||++.++.
T Consensus 297 ~~~~~-~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 297 WVGDD-KVISCSMDGSVRLWSLKQNT--------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp EETTT-EEEEEETTSEEEEEETTTTE--------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred ECCCC-EEEEEeCCCcEEEEECCCCc--------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence 99999 99999999999999997753 22333322 34444433330 222 3578999999999876
Q ss_pred ----------------e-eeeccc----ceEEecCCCCC--eecccCCCceEEEeecC
Q 039790 568 ----------------I-QQYALD----LSQCLPPPLEN--AELEKTDSNATRAFDVA 602 (1395)
Q Consensus 568 ----------------i-~~~~~~----~~~cl~~s~d~--l~~~~sd~~v~~iWD~~ 602 (1395)
+ ..+..+ ...++.+++++ +++++ +++.+++||+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~ 424 (425)
T 1r5m_A 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY-SLQEGSVVAIP 424 (425)
T ss_dssp -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE-SSSCCEEEECC
T ss_pred eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe-cCceEEEEeec
Confidence 3 333322 67788888776 55555 45667799985
No 44
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=1.7e-29 Score=327.18 Aligned_cols=288 Identities=17% Similarity=0.222 Sum_probs=226.6
Q ss_pred ccCCCC-CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 152 PTLPPP-SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~p-~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
+.++++ +..|++++.|++|++|++...+ . ........+.+|...|.+++|+++|++
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~-~----------------------~~~~~~~~~~~h~~~v~~v~~s~~g~~ 444 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDD-K----------------------AYGVAQRRLTGHSHFVEDVVLSSDGQF 444 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCST-T----------------------CSCEEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCC-c----------------------ccccccceecCCCCcEEEEEECCCCCE
Confidence 445544 3689999999999999943110 0 011334678899999999999999999
Q ss_pred EEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 231 ICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
|++|+.||+|+|||+.++ ....+.+|.+.|.+++| ++++.+|++|+.||+|+|||+.... ...+
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~s~D~~i~iwd~~~~~--------------~~~~ 509 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF-SLDNRQIVSASRDRTIKLWNTLGEC--------------KYTI 509 (694)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CTTSSCEEEEETTSCEEEECTTSCE--------------EEEE
T ss_pred EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEE-eCCCCEEEEEeCCCEEEEEECCCCc--------------ceee
Confidence 999999999999999988 46788999999999999 8999999999999999999986432 1122
Q ss_pred e---cCCCCCccEEEEeCCC--CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 310 L---ADGDSVHPRVCWHPHK--QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 310 ~---~~~~~~v~~v~~sp~~--~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
. ..|...+.+++|+|++ ..+++++.++.+.+|+.... . ....+.+|.+.|++++|
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~-------------------~~~~~~~h~~~v~~v~~ 569 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-K-------------------LRSTLAGHTGYVSTVAV 569 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-C-------------------EEEEECCCSSCEEEEEE
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-c-------------------EEEEEcCCCCCEEEEEE
Confidence 1 3567789999999987 34566666677777765331 1 15677889999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPS 464 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~ 464 (1395)
+|++ .+|++|+.||+|+|||+++++++..+..+. .|.+++|+ |++.+|+++ .|+.|+|||+.++
T Consensus 570 spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~s----p~~~~l~~~--~~~~i~iwd~~~~------- 633 (694)
T 3dm0_A 570 SPDG-SLCASGGKDGVVLLWDLAEGKKLYSLEANS--VIHALCFS----PNRYWLCAA--TEHGIKIWDLESK------- 633 (694)
T ss_dssp CTTS-SEEEEEETTSBCEEEETTTTEEEECCBCSS--CEEEEEEC----SSSSEEEEE--ETTEEEEEETTTT-------
T ss_pred eCCC-CEEEEEeCCCeEEEEECCCCceEEEecCCC--cEEEEEEc----CCCcEEEEE--cCCCEEEEECCCC-------
Confidence 9998 899999999999999999999998887664 79999999 999888764 4778999999988
Q ss_pred CcccccEEEEEeccCcccc----------cccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 465 DIESWKCTQTLELKSSAEL----------RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 465 ~~~~~~~l~tl~~h~~~i~----------~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.++..+..+..... ......++..++|+++|.+|++|+.||.|+||++.
T Consensus 634 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 634 -----SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -----EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -----CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 77777765432110 00111235578999999999999999999999985
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-29 Score=292.77 Aligned_cols=289 Identities=13% Similarity=0.136 Sum_probs=237.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+++..|++++.|+.|++|++. ....+..+.+|...|.+++|++++++|
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~----------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l 89 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSL----------------------------NGERLGTLDGHTGTIWSIDVDCFTKYC 89 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETT----------------------------TCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCC----------------------------CchhhhhhhhcCCcEEEEEEcCCCCEE
Confidence 6667777889999999999999843 113456677899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC-----CcEEEEECCCCCCCCCCcccccceEEE
Q 039790 232 CYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD-----GRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D-----gtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
++|+.||.|+|||+.++.......|...|.+++| ++++.+|++++.+ |.|++||+..+.............+
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~-- 166 (369)
T 3zwl_B 90 VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEF-SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI-- 166 (369)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECSSCEEEEEE-CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS--
T ss_pred EEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEE-ccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee--
Confidence 9999999999999998854433338999999999 8999999999999 9999999998763332221111111
Q ss_pred EEEecCCCC--CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 307 IQILADGDS--VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 307 l~~~~~~~~--~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
.....+.. .+.+++|++++..+++++.++.+.+|+...... ....+..|...|.+++|
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~~~~~~~~v~~~~~ 226 (369)
T 3zwl_B 167 -HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-------------------YVDSIDLHEKSISDMQF 226 (369)
T ss_dssp -EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-------------------EEEEEECCSSCEEEEEE
T ss_pred -eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-------------------eEEEEecCCCceeEEEE
Confidence 12223333 788999999999888888888888887644222 15667789999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--------------eEE
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--------------ELK 450 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--------------~I~ 450 (1395)
+|++ .+|++++.||.|++||+++++++..+. +.. .+.+++|+ |+++++++++ .++ .|+
T Consensus 227 ~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~-~~~~~~~~----~~~~~l~~~~-~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 227 SPDL-TYFITSSRDTNSFLVDVSTLQVLKKYE-TDC-PLNTAVIT----PLKEFIILGG-GQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp CTTS-SEEEEEETTSEEEEEETTTCCEEEEEE-CSS-CEEEEEEC----SSSSEEEEEE-CCC-------------CEEE
T ss_pred CCCC-CEEEEecCCceEEEEECCCCceeeeec-CCC-CceeEEec----CCCceEEEee-cCCCceEEEEecCCCcceeE
Confidence 9998 899999999999999999999999998 444 89999999 9999999987 666 899
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+||+.++ +++..+..|...+. .++|+++|.+|++++.||.|++|++..+
T Consensus 299 ~~d~~~~------------~~~~~~~~~~~~v~---------~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 299 FYHKIFE------------EEIGRVQGHFGPLN---------TVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEETTTC------------CEEEEEECCSSCEE---------EEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred EEecCCC------------cchhheecccCcEE---------EEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 9999888 88999998887654 4999999999999999999999999764
No 46
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=3.5e-29 Score=316.79 Aligned_cols=405 Identities=12% Similarity=0.057 Sum_probs=275.5
Q ss_pred ccCCC--CCCeEEeecCCCCEEEEeCcCC------CCCee----eeCceEEEEEeccCCCccCcc--------------c
Q 039790 152 PTLPP--PSDSTVVIPSAPPVRLRSSKVP------KGRHL----IGNHSVYDIDVRLDGEVQPQL--------------E 205 (1395)
Q Consensus 152 ~s~p~--p~~~Las~s~Dg~Vrlwd~~sp------~Gr~L----~G~~~v~~v~~~~~G~~~~~~--------------~ 205 (1395)
+.+.+ ++..|++++.||.|++|++... .++.+ .....+..+.+.++|..+... .
T Consensus 70 ~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~ 149 (615)
T 1pgu_A 70 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS 149 (615)
T ss_dssp EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT
T ss_pred EEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC
Confidence 56677 8899999999999999996422 22333 234567777777766543211 2
Q ss_pred ccceeeeeCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCC-ceEEeccCCC---CeEEEEEeeCC-CCEEEEEECC
Q 039790 206 VTPITKYISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITA-LRSLLRGHTQ---RVTDMAFFAED-VHLLASASVD 279 (1395)
Q Consensus 206 ~~~i~~l~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~-~~~~l~~H~~---~V~slaf~s~d-g~~LaSgs~D 279 (1395)
...+..+.+|...|.+++|+++++ +|++|+.||.|++||+.++ ....+.+|.. .|.+++| +++ +++|++|+.|
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF-SPDSGEFVITVGSD 228 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE-CSTTCCEEEEEETT
T ss_pred CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE-CCCCCCEEEEEeCC
Confidence 346678889999999999999998 8999999999999999887 4678889999 9999999 888 9999999999
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEe-c---CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQIL-A---DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~-~---~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
|.|++||+.+++ .+..+ . .|...+.+++|+ ++..+++++.++.+.+|+......
T Consensus 229 g~i~vwd~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~------- 286 (615)
T 1pgu_A 229 RKISCFDGKSGE--------------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC------- 286 (615)
T ss_dssp CCEEEEETTTCC--------------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE-------
T ss_pred CeEEEEECCCCC--------------EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE-------
Confidence 999999999887 34444 4 788899999999 887777777777787777643211
Q ss_pred CCCccCccccccceEEEccc----CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeec
Q 039790 356 EPLKCPVDELINGVQLVGKH----DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h----~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
+..+..+ ...+.++.|+ ++ .+|++++.||.|++||+.+++++..+.+|.+ .|++++| +.
T Consensus 287 -------------~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~-~~ 349 (615)
T 1pgu_A 287 -------------VQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTISGHNK-GITALTV-NP 349 (615)
T ss_dssp -------------EEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEECCCSS-CEEEEET-TT
T ss_pred -------------EEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEeCCCC-CEEEEEe-cC
Confidence 3334334 4678899986 55 7999999999999999999999989888765 6666665 21
Q ss_pred --------------------C---------CCCCcEEEEEecCCCeEEEEECCCCCC-----------------------
Q 039790 432 --------------------P---------HPQHIVLITGGPLNRELKIWASAEEEG----------------------- 459 (1395)
Q Consensus 432 --------------------~---------~pdg~~L~s~Gs~Dg~I~IWDl~tg~~----------------------- 459 (1395)
. .+++.+|++++ .|+.|++||+.+++.
T Consensus 350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 428 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 428 (615)
T ss_dssp TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE-TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe-CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence 0 02355666655 777777777654210
Q ss_pred ---------CC-------------------CCCCcccccEEEEEeccCccc--c-cccccccceEEEEeCCCCEEEEEeC
Q 039790 460 ---------WL-------------------LPSDIESWKCTQTLELKSSAE--L-RLEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 460 ---------~~-------------------~~~~~~~~~~l~tl~~h~~~i--~-~~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
.. +.........+..++...... . ..........++|+++|.+|++++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC
Confidence 00 000000011122222111100 0 0011122346999999999999999
Q ss_pred CCeEEEEEcCCCCCCCCcceeeeee-eeccccEEEEec----------CCCCcC--cCCCCeEEEEEcCCC-ce-ee--e
Q 039790 509 KNAIYAIHMDYGPNPASTRMDYIAE-FTVTMPILSLTG----------TTTDAS--PDGEHIVQIYCVQTQ-AI-QQ--Y 571 (1395)
Q Consensus 509 Dg~I~iWdl~~g~~~~~~~~~~i~~-f~~~~~ils~~~----------~~~d~~--~s~dg~V~lWdv~t~-~i-~~--~ 571 (1395)
|+.|++|++..++. +..+.. +......+.|.. .. ..+ ++.|+.|+||++.++ .. .. .
T Consensus 509 dg~i~iw~~~~~~~-----~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 582 (615)
T 1pgu_A 509 MGKILLYDLQSREV-----KTSRWAFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKRPMKIIKALNA 582 (615)
T ss_dssp TSCEEEEETTTTEE-----EECCSCCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred CCeEEEeeCCCCcc-----eeEeecCCCCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCCCceechhhhc
Confidence 99999999987541 111211 222222333433 22 222 357899999999996 33 32 3
Q ss_pred cccceEEecCCCCC-eecccCCCceEEEeecCCC
Q 039790 572 ALDLSQCLPPPLEN-AELEKTDSNATRAFDVANP 604 (1395)
Q Consensus 572 ~~~~~~cl~~s~d~-l~~~~sd~~v~~iWD~~tg 604 (1395)
|.....|+.|++++ +++++ +++.+++||+.++
T Consensus 583 h~~~v~~l~~s~~~~l~s~~-~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 583 HKDGVNNLLWETPSTLVSSG-ADACIKRWNVVLE 615 (615)
T ss_dssp STTCEEEEEEEETTEEEEEE-TTSCEEEEEEC--
T ss_pred CccceEEEEEcCCCCeEEec-CCceEEEEeeecC
Confidence 45557777777765 55555 4577789998753
No 47
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=5.6e-29 Score=302.16 Aligned_cols=282 Identities=16% Similarity=0.234 Sum_probs=231.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.++.. ..|++| .|++|++||..+ |+. ..+..+.+|...|++++|+++|++|
T Consensus 111 l~wS~~-n~lAvg-ld~tV~lWd~~t--g~~------------------------~~~~~~~~~~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 111 VDWSSG-NVLAVA-LDNSVYLWSASS--GDI------------------------LQLLQMEQPGEYISSVAWIKEGNYL 162 (420)
T ss_dssp EEECTT-SEEEEE-ETTEEEEEETTT--CCE------------------------EEEEECCSTTCCEEEEEECTTSSEE
T ss_pred EEECCC-CEEEEE-eCCEEEEEECCC--CCE------------------------EEEEEecCCCCcEEEEEECCCCCEE
Confidence 444432 455554 589999999441 111 1123445788899999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
|+|+.||.|+|||+.++ .+..+.+|...|.+++| ++.+|++|+.|+.+++||..... ..+..+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~~~-------------~~~~~~ 226 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAE-------------HHVATL 226 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSS-------------CEEEEE
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee---CCCEEEEEeCCCceeEeeecccc-------------eeeEEe
Confidence 99999999999999998 47789999999999988 57899999999999999998754 134566
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..|...+..+.|++++..+++++.++.+.+|+....... ...+.....|...|.+++|+|++..
T Consensus 227 ~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~----------------~~~~~~~~~~~~~V~~~~~~p~~~~ 290 (420)
T 4gga_A 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----------------WVPLQTFTQHQGAVKAVAWCPWQSN 290 (420)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC----------------SCCSEEECCCSSCEEEEEECTTCTT
T ss_pred cccccceeeeeecCCCCeeeeeeccccceEEeecccccc----------------ceeeeeecccCCceeeeeeCCCccc
Confidence 778889999999999998888888888888876543211 1114667789999999999999877
Q ss_pred EEEEE--eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE-ecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 391 RLASA--SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG-GPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 391 ~LaSg--s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~-Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+++++ +.|++|+|||++++.++..+..|. .+.++.|+ +++..|+++ |+.|+.|+|||+.++
T Consensus 291 ~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~~~~~----~~~~~lv~~sg~~d~~I~iwd~~~~---------- 354 (420)
T 4gga_A 291 VLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWS----PHYKELISGHGFAQNQLVIWKYPTM---------- 354 (420)
T ss_dssp EEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEEEEEE----TTTTEEEEEECTTTCCEEEEETTTC----------
T ss_pred EEEEEeecCCCEEEEEeCCccccceeecccc--ceeeeeec----CCCCeEEEEEecCCCEEEEEECCCC----------
Confidence 87765 479999999999999999998875 69999999 888888775 447999999999988
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++.+|.+|.+.+.. ++|++||.+|++|+.|++|+|||+...
T Consensus 355 --~~v~~l~gH~~~V~~---------l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 355 --AKVAELKGHTSRVLS---------LTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp --CEEEEECCCSSCEEE---------EEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred --cEEEEEcCCCCCEEE---------EEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999877654 999999999999999999999998753
No 48
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.8e-30 Score=340.24 Aligned_cols=393 Identities=10% Similarity=0.026 Sum_probs=263.0
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+ +..|++++.|++|++||+.. | ..+..+. |.+.|++++|+|++++|
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~--~--------------------------~~~~~~~-~~~~V~~v~~sp~g~~l 113 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYS--Q--------------------------KVLTTVF-VPGKITSIDTDASLDWM 113 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTT--C--------------------------SEEEEEE-CSSCEEEEECCTTCSEE
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCC--C--------------------------cEEEEEc-CCCCEEEEEECCCCCEE
Confidence 44455 56799999999999999541 1 2233443 56789999999999999
Q ss_pred EEEEcCCeEEEEECCCCce------------EEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 232 CYGLKLGNIRILNIITALR------------SLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~~------------~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++|+.||.|++||+.++.. ..+.+|.+.|++|+| ++ ++.+|++|+.||+| +||+++++
T Consensus 114 ~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~-sp~~~~~l~~g~~dg~v-lWd~~~~~------- 184 (902)
T 2oaj_A 114 LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW-NPRDIGTVLISYEYVTL-TYSLVENE------- 184 (902)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE-ETTEEEEEEEECSSCEE-EEETTTTE-------
T ss_pred EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE-ccCCCCEEEEEeCCCcE-EEECCCCc-------
Confidence 9999999999999998754 234779999999999 66 46799999999999 99999876
Q ss_pred cccceEEEEEEecC------------------CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccc--cc-----c
Q 039790 299 ILGKIVVAIQILAD------------------GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGE--RF-----S 353 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~------------------~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~--~~-----s 353 (1395)
.+..+.. |...|.+++|+|++..+++++.++.+.+|+........ .+ .
T Consensus 185 -------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~ 257 (902)
T 2oaj_A 185 -------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEIN 257 (902)
T ss_dssp -------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT
T ss_pred -------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccC
Confidence 2222222 24679999999999888888888888888764421100 00 0
Q ss_pred ------------CCCCCccCcc-----------------c-c--ccceE-----------------------------EE
Q 039790 354 ------------AEEPLKCPVD-----------------E-L--INGVQ-----------------------------LV 372 (1395)
Q Consensus 354 ------------~~~~~~~~~~-----------------~-~--~~~~~-----------------------------~l 372 (1395)
....+....| + . ...+. .+
T Consensus 258 ~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 337 (902)
T 2oaj_A 258 VPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF 337 (902)
T ss_dssp SCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEE
T ss_pred CCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEE
Confidence 0000000001 0 0 00111 11
Q ss_pred c-ccCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEeCCCCceeEE-------e--------------------
Q 039790 373 G-KHDGEITELSMCQW---------LTTRLASASLDGTVKIWDDRKSTPLAV-------L-------------------- 415 (1395)
Q Consensus 373 ~-~h~~~V~slafspd---------g~~~LaSgs~Dg~IrIWDl~sg~~l~t-------l-------------------- 415 (1395)
. .|.+.|.++.|.++ ++..+++++.||.|++||+.+|..+.. +
T Consensus 338 ~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w 417 (902)
T 2oaj_A 338 PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLW 417 (902)
T ss_dssp CCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHH
T ss_pred ecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHH
Confidence 1 35667888887652 224788899999999999987753322 2
Q ss_pred --------------cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe-----
Q 039790 416 --------------RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE----- 476 (1395)
Q Consensus 416 --------------~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~----- 476 (1395)
.+|.. .+.+|+|+ |++++|++++ .|++||+||+.++.- .....+ .+.
T Consensus 418 ~~~~~~~~~~~~~l~G~~~-~v~sv~~s----pdg~~laSgs-~DgtVrlWd~~~g~~-------~~~~~~-~~~l~~~~ 483 (902)
T 2oaj_A 418 LGALSAAQNKDYLLKGGVR-TKRQKLPA----EYGTAFITGH-SNGSVRIYDASHGDI-------QDNASF-EVNLSRTL 483 (902)
T ss_dssp HHHHHTTBCCCCSCCCSBC-CCCCCCCC----SEEEEEEEEE-TTSEEEEEESSCCTT-------TTTBCE-EEEHHHHT
T ss_pred HHHHhcccCCCCcccCCcC-CCCccccc----ccCcEEEEec-CCCcEEEEECCCccc-------cCCceE-Eeechhhc
Confidence 23333 44455555 8899999976 999999999987610 000111 111
Q ss_pred --ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC--------C---------------------
Q 039790 477 --LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA--------S--------------------- 525 (1395)
Q Consensus 477 --~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~--------~--------------------- 525 (1395)
+|... +..++|++||.+||+|+.||+|+||++..++... .
T Consensus 484 ~~~h~~~---------V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 484 NKAKELA---------VDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp TCSSSCC---------EEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred CCCCCCc---------eeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence 33333 3469999999999999999999999998763200 0
Q ss_pred --------cceeeeeeeecc-ccEEEEecCCCCcC---cCCCCeEEEEEcCCCceee---------ecccceEEecCC--
Q 039790 526 --------TRMDYIAEFTVT-MPILSLTGTTTDAS---PDGEHIVQIYCVQTQAIQQ---------YALDLSQCLPPP-- 582 (1395)
Q Consensus 526 --------~~~~~i~~f~~~-~~ils~~~~~~d~~---~s~dg~V~lWdv~t~~i~~---------~~~~~~~cl~~s-- 582 (1395)
..+..+..+..+ ..+.++..+. +++ ++.|++|+|||+.++.+.. .|...+.|+.|+
T Consensus 555 ~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~ 633 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIM 633 (902)
T ss_dssp GGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEE
T ss_pred ccCCCCCCCccceeEEEEcCCCcEEEEEecC-CcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEE
Confidence 001223334333 4555555554 333 4679999999999987642 344558899998
Q ss_pred ---CCC----eecccCCCceEEEeec---CCCCcceeeccCC
Q 039790 583 ---LEN----AELEKTDSNATRAFDV---ANPDGSASLESSH 614 (1395)
Q Consensus 583 ---~d~----l~~~~sd~~v~~iWD~---~tg~~~~~l~g~~ 614 (1395)
+|+ ..++++.++.+++||+ .+|++...|.|+.
T Consensus 634 ~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 634 EYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp ECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEE
T ss_pred ecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCce
Confidence 873 3344445688889999 8999999998654
No 49
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.4e-28 Score=301.47 Aligned_cols=335 Identities=16% Similarity=0.155 Sum_probs=248.6
Q ss_pred ceeeeeCCCCCE-EEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 208 PITKYISDPGLV-LGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 208 ~i~~l~~h~~~V-~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
....+.+|...| .++.| ++++|++|+.||.|+|||+.++ .+..+.+|.+.|++++| ++++ +|++|+.||+|++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~-~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-CSTT-EEEEEETTSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEE-cCCC-EEEEEeCCCCEEEE
Confidence 446788998875 55544 6789999999999999999988 47788999999999999 7766 99999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC--CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc-
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP--HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV- 362 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp--~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~- 362 (1395)
|+.++. .+..+..|...+.+++|++ ++..+++++.++.+.+|+....................
T Consensus 189 d~~~~~--------------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 189 DIKKGC--------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp ETTTTE--------------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred ECCCCc--------------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 999876 5566778899999999985 55666777777777777765432211111110000000
Q ss_pred --cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 363 --DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 363 --~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
.........+.+|...|.++. +++ .+|++|+.||.|++||+++++++..+.+|.+ .|++++|+ |++.+|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~l~ 326 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYD----HERKRCI 326 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEE----TTTTEEE
T ss_pred ccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CEEEEEEc----CCCCEEE
Confidence 000111567788999999884 555 7999999999999999999999999999987 99999999 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+++ .||.|++||+.++ +++.++.+|...+. .+.|+ +.+|++++.||.|++||+..+
T Consensus 327 sg~-~dg~i~vwd~~~~------------~~~~~~~~h~~~v~---------~~~~~--~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 327 SAS-MDTTIRIWDLENG------------ELMYTLQGHTALVG---------LLRLS--DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEE-TTSCEEEEETTTT------------EEEEEECCCSSCEE---------EEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEe-CCCcEEEEECCCC------------cEEEEEeCCCCcEE---------EEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence 977 9999999999988 99999998887653 36665 789999999999999999874
Q ss_pred CCCCCcceeeeeeeeccccEEEEecCCCCcC-cCCCCeEEEEEcCCCceeee----cccceEEecCCCCCeecccCCCce
Q 039790 521 PNPASTRMDYIAEFTVTMPILSLTGTTTDAS-PDGEHIVQIYCVQTQAIQQY----ALDLSQCLPPPLENAELEKTDSNA 595 (1395)
Q Consensus 521 ~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~-~s~dg~V~lWdv~t~~i~~~----~~~~~~cl~~s~d~l~~~~sd~~v 595 (1395)
.. . ...........+.|.... ..+ ..+|+.|+|||+.++++... +.....++.++.+.+.++..++++
T Consensus 383 ~~----~--~~~~~~~~~~~~~~~~~~-~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 383 SR----K--FSYHHTNLSAITTFYVSD-NILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQ 455 (464)
T ss_dssp CE----E--EEEECTTCCCEEEEEECS-SEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTE
T ss_pred ce----e--eeecCCCCccEEEEEeCC-CEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCe
Confidence 31 1 111112223334444443 222 34589999999999987642 334467777877677776666666
Q ss_pred EEEe
Q 039790 596 TRAF 599 (1395)
Q Consensus 596 ~~iW 599 (1395)
+.+|
T Consensus 456 ~~i~ 459 (464)
T 3v7d_B 456 SFLE 459 (464)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=7.1e-29 Score=341.90 Aligned_cols=344 Identities=13% Similarity=0.109 Sum_probs=260.5
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
....+.+|.+.|++++|+++|++|++|+.||.|+|||+.++ .+..+.+|.+.|.+++| ++++++|++|+.||+|+|||
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF-SSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEE-ecCCCEEEEEeCCCeEEEEE
Confidence 34567899999999999999999999999999999999987 47789999999999999 89999999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-eEEEE-EeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-EILML-AIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-~lla~-g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
+.+++ .+..+..|...+.+++|++++. .++++ +.++.+.+|+... +.
T Consensus 686 ~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~---------------- 734 (1249)
T 3sfz_A 686 SATGK--------------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KE---------------- 734 (1249)
T ss_dssp TTTCC--------------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SS----------------
T ss_pred CCCCc--------------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cc----------------
Confidence 99887 4556678889999999999643 34444 4455666665532 22
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec----------------------------
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR---------------------------- 416 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~---------------------------- 416 (1395)
....+.+|.+.|++++|+|++ .+|++|+.||+|++||++++.....+.
T Consensus 735 ---~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 735 ---CRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp ---EEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred ---hhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 156778899999999999998 899999999999999988775544332
Q ss_pred ---------------------------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 417 ---------------------------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 417 ---------------------------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
+|.+ .|.+++|+ |++.++++++ .|+.|++||+.++
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~s----p~~~~l~~~~-~dg~v~vwd~~~~------------ 872 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFS----PYDHLAVIAL-SQYCVELWNIDSR------------ 872 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECSSSS-CCCEEEEC----SSTTEEEEEC-SSSCEEEEETTTT------------
T ss_pred CEEEEEcCCcEEEEEecCCCceeEEcCCCCC-ceEEEEEc----CCCCEEEEEe-CCCeEEEEEcCCC------------
Confidence 5665 89999999 9999999876 9999999999988
Q ss_pred cEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc-----------------------
Q 039790 470 KCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST----------------------- 526 (1395)
Q Consensus 470 ~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~----------------------- 526 (1395)
.++..+.+|...+. .++|+++|.+|++++.|+.|++|++..+......
T Consensus 873 ~~~~~~~~h~~~v~---------~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1249)
T 3sfz_A 873 LKVADCRGHLSWVH---------GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI 943 (1249)
T ss_dssp EEEEEECCCSSCEE---------EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESS
T ss_pred ceeeecCCCccceE---------EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCC
Confidence 88888888876654 4888888888888888888888886531100000
Q ss_pred -----------c--------e-----------------------------eeeeeeecc---ccEEEEecCCCCcC--cC
Q 039790 527 -----------R--------M-----------------------------DYIAEFTVT---MPILSLTGTTTDAS--PD 553 (1395)
Q Consensus 527 -----------~--------~-----------------------------~~i~~f~~~---~~ils~~~~~~d~~--~s 553 (1395)
. + ..+..+..+ ...+.|.... ..+ .+
T Consensus 944 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~ 1022 (1249)
T 3sfz_A 944 RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSS 1022 (1249)
T ss_dssp SSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEEC
T ss_pred cceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEc
Confidence 0 0 000001111 1112222221 112 35
Q ss_pred CCCeEEEEEcCCCceee--ecccceEEecCCCCCeecccCCCceEEEeecCCCCcceeeccCCC
Q 039790 554 GEHIVQIYCVQTQAIQQ--YALDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLESSHG 615 (1395)
Q Consensus 554 ~dg~V~lWdv~t~~i~~--~~~~~~~cl~~s~d~l~~~~sd~~v~~iWD~~tg~~~~~l~g~~~ 615 (1395)
.|+.|++|++.++.... .+.....|+.+.+++..+..+.++.+++||+.++.+...+.++.+
T Consensus 1023 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 1086 (1249)
T 3sfz_A 1023 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG 1086 (1249)
T ss_dssp SSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS
T ss_pred CCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC
Confidence 78999999999987643 344556777777777444444567888999999999999985544
No 51
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.4e-29 Score=300.79 Aligned_cols=288 Identities=11% Similarity=0.056 Sum_probs=228.6
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC----C---CEE
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN----R---NYI 231 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd----g---~~L 231 (1395)
..|++++.||.|++|++.... . ......+..+.+|...|.+++|+++ | ++|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~--------------------~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLD--------------------N--ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCT--------------------T--CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred CeEEEEcCCCEEEEEECCCcc--------------------c--ccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 799999999999999954210 0 0112356777899999999999999 9 999
Q ss_pred EEEEcCCeEEEEECCCCc------eEEeccC-----CCCeEEEEEee----CCCCE-EEEEECCCcEEEEECCC------
Q 039790 232 CYGLKLGNIRILNIITAL------RSLLRGH-----TQRVTDMAFFA----EDVHL-LASASVDGRFFIWNITE------ 289 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~------~~~l~~H-----~~~V~slaf~s----~dg~~-LaSgs~DgtV~IWdl~t------ 289 (1395)
++|+.||.|++||+.++. ...+.+| ...|.+++| + +++.+ |++|+.||.|++||+.+
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW-GASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEE-ECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEE-eeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 999999999999999875 7888889 599999999 7 88999 99999999999999998
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
+......+ .......+.....+...+.+++|++++ .+++++.++.+.+|+... +. .+
T Consensus 164 ~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~-------------------~~ 220 (397)
T 1sq9_A 164 SLTLNWSP--TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LR-------------------PL 220 (397)
T ss_dssp HTTTCCCC--EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TE-------------------EE
T ss_pred cceeeccC--cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-Cc-------------------ee
Confidence 55322110 000000011114577889999999999 666666667777776543 11 14
Q ss_pred EEEcc---c---CCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecC-------------CCCCCeeEEE
Q 039790 370 QLVGK---H---DGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRP-------------YDGHPVNCVT 427 (1395)
Q Consensus 370 ~~l~~---h---~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~-------------h~~~~V~sV~ 427 (1395)
..+.. | ...|++++|+|++ .+|++++.| |.|++||+++++++..+.+ |.+ .|.+++
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 298 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLS 298 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEE
T ss_pred EEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEE
Confidence 56666 8 9999999999998 899999999 9999999999999999998 887 999999
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe------cc---------------Cccccccc
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE------LK---------------SSAELRLE 486 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~------~h---------------~~~i~~~~ 486 (1395)
|+ |++++|++++ .|+.|+|||+.++ +++.++. .| ...
T Consensus 299 ~~----~~~~~l~~~~-~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----- 356 (397)
T 1sq9_A 299 FN----DSGETLCSAG-WDGKLRFWDVKTK------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG----- 356 (397)
T ss_dssp EC----SSSSEEEEEE-TTSEEEEEETTTT------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-----
T ss_pred EC----CCCCEEEEEe-CCCeEEEEEcCCC------------ceeEEEecccCcccchhhhhccccccccccCCc-----
Confidence 99 9999999977 9999999999988 8999998 55 333
Q ss_pred ccccceEEEEeCCC----------CEEEEEeCCCeEEEEEcCCC
Q 039790 487 DAFFNQVVALNRAG----------LFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 487 ~~~~~~~l~~S~dg----------~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+..++|+++| .+|++++.||.|++|++.+|
T Consensus 357 ----v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 357 ----VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ----EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ----eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 3369999998 79999999999999999875
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=4.8e-29 Score=294.69 Aligned_cols=250 Identities=12% Similarity=0.057 Sum_probs=213.5
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+..|.+.|++++|++++++|++|+.||.|+|||+.++ ....+.+|...|.+++| ++++++|++|+.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW-APDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEE-ETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEE-eCCCCEEEEEcCCCeEEEEECC
Confidence 4568899999999999999999999999999999998 67788999999999999 8899999999999999999998
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
+++ . ........+...+.+++|++++..+++++.++.+.+|+........ ..
T Consensus 83 ~~~-----------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----------------~~ 134 (372)
T 1k8k_C 83 GRT-----------W-KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW----------------VC 134 (372)
T ss_dssp TTE-----------E-EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE----------------EE
T ss_pred CCe-----------e-eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce----------------ee
Confidence 764 1 1222345677889999999999888888888888888765432100 00
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC------------------CCCceeEEecCCCCCCeeEEEEee
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD------------------RKSTPLAVLRPYDGHPVNCVTFLI 430 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl------------------~sg~~l~tl~~h~~~~V~sV~fs~ 430 (1395)
.....+|...|++++|+|++ .+|++|+.||.|++||+ ..+.++..+.+|.+ .|.+++|+
T Consensus 135 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~- 211 (372)
T 1k8k_C 135 KHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFS- 211 (372)
T ss_dssp EEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEEC-
T ss_pred eeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEEC-
Confidence 23346789999999999998 89999999999999995 46789999999987 99999999
Q ss_pred cCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 431 GPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 431 ~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
|++.+|++++ .|+.|++||++++ +++..+..|...+. .++|+++|.+|++| .|+
T Consensus 212 ---~~~~~l~~~~-~d~~i~i~d~~~~------------~~~~~~~~~~~~v~---------~~~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 212 ---ANGSRVAWVS-HDSTVCLADADKK------------MAVATLASETLPLL---------AVTFITESSLVAAG-HDC 265 (372)
T ss_dssp ---SSSSEEEEEE-TTTEEEEEEGGGT------------TEEEEEECSSCCEE---------EEEEEETTEEEEEE-TTS
T ss_pred ---CCCCEEEEEe-CCCEEEEEECCCC------------ceeEEEccCCCCeE---------EEEEecCCCEEEEE-eCC
Confidence 9999999977 9999999999988 89999988876543 48999999998888 899
Q ss_pred eEEEEEcCC
Q 039790 511 AIYAIHMDY 519 (1395)
Q Consensus 511 ~I~iWdl~~ 519 (1395)
.|++|++..
T Consensus 266 ~i~i~~~~~ 274 (372)
T 1k8k_C 266 FPVLFTYDS 274 (372)
T ss_dssp SCEEEEEET
T ss_pred eEEEEEccC
Confidence 999999987
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=2.4e-29 Score=303.44 Aligned_cols=295 Identities=13% Similarity=0.138 Sum_probs=219.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+++.+..|++++.|+.|++|+.... .....+..| ..+....|++++++|
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~----------------------------~~~~~~~~~-~~~~~~~~~~~~~~l 112 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIR----------------------------DGSKMLKRA-DYTAVDTAKLQMRRF 112 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSE----------------------------ETTTTSCSC-CEEEEEEECSSSCEE
T ss_pred eeeeecCCeEEEEEcCCcEEEEEeccc----------------------------ceeeEEecC-CceEEEEEecCCCEE
Confidence 455667789999999999999994310 111223334 445555789999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|+|||+.++. ...+.+|.+.|++++| ++++++|++|+.||+|++||+.+++ .+..+
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~d~~i~iwd~~~~~--------------~~~~~ 177 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKF-FPSGEALISSSQDMQLKIWSVKDGS--------------NPRTL 177 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCC--------------CCEEE
T ss_pred EEEECCCCEEEEeCCCcceeeecccccCccEEEEE-CCCCCEEEEEeCCCeEEEEeCCCCc--------------CceEE
Confidence 999999999999999885 4556799999999999 8999999999999999999999877 23445
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE--------EcccCCCeEEE
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL--------VGKHDGEITEL 382 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--------l~~h~~~V~sl 382 (1395)
..|...+.+++|+|++..+++++.++.+.+|+.........+...... ......+.. ...|...++++
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP----HDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT----TCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC----CCCccEEEEecCCcceeeecccCcccce
Confidence 678899999999999998888888888888877543221111100000 000000000 11234556666
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC-CCCCCeeEEEEeecCCCCCc-EEEEEecCCCeEEEEECCCCCCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP-YDGHPVNCVTFLIGPHPQHI-VLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~-h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
+|+|++ .+|++|+.||.|++||++++..+..+.. |.. .|++++|+ |++. +|++++ .||.|++||+++++
T Consensus 254 ~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~~l~~g~-~dg~i~vwd~~~~~-- 324 (420)
T 3vl1_A 254 EFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC-SCNSLTVD----GNNANYIYAGY-ENGMLAQWDLRSPE-- 324 (420)
T ss_dssp CSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSS-CEEEEEEC----SSCTTEEEEEE-TTSEEEEEETTCTT--
T ss_pred EEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCC-CceeEEEe----CCCCCEEEEEe-CCCeEEEEEcCCCc--
Confidence 778888 8999999999999999999988887764 665 99999999 9998 888866 99999999998861
Q ss_pred CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 461 LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.++..+..|.... ...+.+ +++.+|++++.|+.|++|++..+.
T Consensus 325 ---------~~~~~~~~~~~~~--------v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 325 ---------CPVGEFLINEGTP--------INNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp ---------SCSEEEEESTTSC--------EEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred ---------CchhhhhccCCCC--------ceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 2366777644322 123544 578899999999999999998753
No 54
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=1.2e-28 Score=311.83 Aligned_cols=354 Identities=11% Similarity=0.137 Sum_probs=268.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCC-EEEEEEec--CC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGL-VLGRQIAV--NR 228 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~-V~~va~Sp--dg 228 (1395)
+.+++++..|++++ ++.|++|++.... .....+..+.+|.+. |.+++|+| ++
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~------------------------~~~~~~~~~~~h~~~~v~~~~~sp~~~~ 78 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGD------------------------SKVPPVVQFTGHGSSVVTTVKFSPIKGS 78 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSC------------------------CSSCSEEEECTTTTSCEEEEEECSSTTC
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCC------------------------CccccceEEecCCCceEEEEEECcCCCC
Confidence 55566777888877 7788888843100 001356678899999 99999999 99
Q ss_pred CEEEEEEcCCeEEEEECCCC---------ceEEeccCCCCeEEEEEeeCCCCEEEEEECC----CcEEEEECCCCCCCCC
Q 039790 229 NYICYGLKLGNIRILNIITA---------LRSLLRGHTQRVTDMAFFAEDVHLLASASVD----GRFFIWNITEGPDEED 295 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~---------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D----gtV~IWdl~tg~~~~~ 295 (1395)
++|++|+.||.|+|||+.++ ....+.+|...|.+++| ++++.+|++++.| +.|++|| .+.
T Consensus 79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~~~~~~v~~~d--~~~---- 151 (615)
T 1pgu_A 79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW-DFEGRRLCVVGEGRDNFGVFISWD--SGN---- 151 (615)
T ss_dssp CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE-CTTSSEEEEEECCSSCSEEEEETT--TCC----
T ss_pred CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEE-eCCCCEEEEeccCCCCccEEEEEE--CCC----
Confidence 99999999999999999643 45678889999999999 8999999999998 7899998 333
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCe-EEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQE-ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~-lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
.+..+..|...+.+++|+|++.. +++++.++.+.+|+.. .+. ....+.+
T Consensus 152 ----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~-------------------~~~~~~~ 201 (615)
T 1pgu_A 152 ----------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFK-------------------FSASDRT 201 (615)
T ss_dssp ----------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBE-------------------EEEEECS
T ss_pred ----------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-Ccc-------------------eeeeecc
Confidence 45566788899999999999985 4444455556666532 221 1566778
Q ss_pred cCC---CeEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceeEEe-c---CCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 375 HDG---EITELSMCQW-LTTRLASASLDGTVKIWDDRKSTPLAVL-R---PYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 375 h~~---~V~slafspd-g~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~---~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
|.. .|++++|+|+ + .+|++++.||.|++||+++++++..+ . +|.+ .|.+++|+ ++.+|++++ .|
T Consensus 202 ~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-----~~~~l~~~~-~d 273 (615)
T 1pgu_A 202 HHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-----DSQKFATVG-AD 273 (615)
T ss_dssp SSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-----SSSEEEEEE-TT
T ss_pred cCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-----CCCEEEEEc-CC
Confidence 999 9999999999 7 89999999999999999999999999 6 8887 99999994 788999877 99
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCc
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~ 526 (1395)
+.|++||+.++ +++..+..+...... ....+.|+ ++.+|++++.|+.|++||+..+.
T Consensus 274 ~~i~~wd~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~----- 330 (615)
T 1pgu_A 274 ATIRVWDVTTS------------KCVQKWTLDKQQLGN-----QQVGVVAT-GNGRIISLSLDGTLNFYELGHDE----- 330 (615)
T ss_dssp SEEEEEETTTT------------EEEEEEECCTTCGGG-----CEEEEEEE-ETTEEEEEETTSCEEEEETTEEE-----
T ss_pred CcEEEEECCCC------------cEEEEEcCCCCcccC-----ceeEEEeC-CCCeEEEEECCCCEEEEECCCCc-----
Confidence 99999999988 889888877422211 12245665 89999999999999999987632
Q ss_pred ceeeeeeeecc-ccEEEEecCCCCcC-cCCCCeEEEEEcCCCceeeecccceEEecCCCCC-eecccCCCceEEEeecCC
Q 039790 527 RMDYIAEFTVT-MPILSLTGTTTDAS-PDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLEN-AELEKTDSNATRAFDVAN 603 (1395)
Q Consensus 527 ~~~~i~~f~~~-~~ils~~~~~~d~~-~s~dg~V~lWdv~t~~i~~~~~~~~~cl~~s~d~-l~~~~sd~~v~~iWD~~t 603 (1395)
.+..+..+ ..+..+.. . +.+ .+.|+.|++|++. .+...+.....|+.+..+. +..++ .++.+++||+.+
T Consensus 331 ---~~~~~~~~~~~v~~~~~-~-~l~~~~~dg~i~~w~~~--~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~~~~~~~ 402 (615)
T 1pgu_A 331 ---VLKTISGHNKGITALTV-N-PLISGSYDGRIMEWSSS--SMHQDHSNLIVSLDNSKAQEYSSIS-WDDTLKVNGITK 402 (615)
T ss_dssp ---EEEEECCCSSCEEEEET-T-TTEEEETTSCEEETTTT--EEECCCCSCEEEEECCSTTCCEEEE-TTTEEEETTEEE
T ss_pred ---EEEEEeCCCCCEEEEEe-c-CcEEECCCCeEEEEEch--hhcCcccCceEEEEECCCcEEEEEe-CCCCEEEEEccc
Confidence 23333333 35555555 4 421 3578999999988 3344455566777775444 44444 557777999876
Q ss_pred CCc
Q 039790 604 PDG 606 (1395)
Q Consensus 604 g~~ 606 (1395)
+.+
T Consensus 403 ~~~ 405 (615)
T 1pgu_A 403 HEF 405 (615)
T ss_dssp EEC
T ss_pred Ccc
Confidence 553
No 55
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.9e-29 Score=299.99 Aligned_cols=258 Identities=12% Similarity=0.090 Sum_probs=211.3
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-------eEEeccCCCCeEEEEEeeCC----C---CEE
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-------RSLLRGHTQRVTDMAFFAED----V---HLL 273 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-------~~~l~~H~~~V~slaf~s~d----g---~~L 273 (1395)
....+.+|.+.|++++|++ ++|++|+.||.|+|||+.++. ...+.+|...|++++| +++ + .+|
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV-LQAIERDAFELCLV 84 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEE-EEEEETTTEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEE-ecccccCCccccEE
Confidence 4567789999999999998 899999999999999999875 7888999999999999 777 8 999
Q ss_pred EEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC-----CCCccEEEEe----CCCCe-EEEEEeCCeEEEEEc
Q 039790 274 ASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG-----DSVHPRVCWH----PHKQE-ILMLAIGNRILKIDS 343 (1395)
Q Consensus 274 aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~-----~~~v~~v~~s----p~~~~-lla~g~~~~ii~~d~ 343 (1395)
++|+.||.|++||+.++.... ...+..+..+ ...+.+++|+ +++.. +++++.++.+.+|+.
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETK---------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTC---------CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred EEEcCCCCEEEEEccCCcccc---------cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 999999999999999876210 0113444555 5889999999 99998 777777888888887
Q ss_pred CCC-----CccccccCCCCCccCccccccceEEE-------cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 039790 344 NRV-----GKGERFSAEEPLKCPVDELINGVQLV-------GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP 411 (1395)
Q Consensus 344 ~~~-----~~~~~~s~~~~~~~~~~~~~~~~~~l-------~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~ 411 (1395)
... +....| .....+ ..|...|++++|+|++ +|++|+.||.|++||++++++
T Consensus 156 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 156 HPFADESNSLTLNW--------------SPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp ESSSSHHHHTTTCC--------------CCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE
T ss_pred Cccccccccceeec--------------cCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCce
Confidence 541 111000 011133 4588999999999987 999999999999999999999
Q ss_pred eEEecC---C---CCCCeeEEEEeecCCCCCcEEEEEecCC---CeEEEEECCCCCCCCCCCCcccccEEEEEec-----
Q 039790 412 LAVLRP---Y---DGHPVNCVTFLIGPHPQHIVLITGGPLN---RELKIWASAEEEGWLLPSDIESWKCTQTLEL----- 477 (1395)
Q Consensus 412 l~tl~~---h---~~~~V~sV~fs~~~~pdg~~L~s~Gs~D---g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~----- 477 (1395)
+..+.+ | .. .|.+++|+ |++.+|++++ .| +.|++||+.++ +++..+..
T Consensus 220 ~~~~~~~~~h~~~~~-~i~~i~~~----~~~~~l~~~~-~d~~~g~i~i~d~~~~------------~~~~~~~~~~~~~ 281 (397)
T 1sq9_A 220 LYNFESQHSMINNSN-SIRSVKFS----PQGSLLAIAH-DSNSFGCITLYETEFG------------ERIGSLSVPTHSS 281 (397)
T ss_dssp EEEEECCC---CCCC-CEEEEEEC----SSTTEEEEEE-EETTEEEEEEEETTTC------------CEEEEECBC----
T ss_pred eEEEeccccccccCC-ccceEEEC----CCCCEEEEEe-cCCCCceEEEEECCCC------------cccceeccCcccc
Confidence 999998 8 77 99999999 9999999977 88 99999999988 88888887
Q ss_pred --------cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 478 --------KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 478 --------h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
|...+. .++|+++|.+|++++.||.|++||+..+
T Consensus 282 ~~~~~~~~~~~~v~---------~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 282 QASLGEFAHSSWVM---------SLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp ----CCBSBSSCEE---------EEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred cccccccccCCcEE---------EEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 655443 5999999999999999999999999774
No 56
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.2e-29 Score=309.66 Aligned_cols=259 Identities=15% Similarity=0.140 Sum_probs=197.7
Q ss_pred eeeeeCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 209 ITKYISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.....+|...|+|++|+| ++++||+|+.||.|+|||+.++. ...+.+|.+.|++|+|++.++++|++|+.||+|+|
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 345667889999999999 67899999999999999998763 44567899999999994357899999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||++++. +..+.....+...+.+++|++++..+++++.++.+.+|+... ..
T Consensus 192 wd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~---------------- 242 (435)
T 4e54_B 192 QDFKGNI------------LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KE---------------- 242 (435)
T ss_dssp EETTSCE------------EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CB----------------
T ss_pred eeccCCc------------eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ce----------------
Confidence 9998643 112222223445677899999998888777788888887532 11
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE---ecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV---LRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t---l~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
+..+.+|.+.|++++|+|++..+|++|+.|++|+|||++++..... ..+|.. .|++|+|+ |+|.+|++
T Consensus 243 ----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~s----pdg~~l~s 313 (435)
T 4e54_B 243 ----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH-PVNAACFS----PDGARLLT 313 (435)
T ss_dssp ----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS-CEEECCBC----TTSSEEEE
T ss_pred ----eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc-cccceeEC----CCCCeeEE
Confidence 3345679999999999999877999999999999999998765443 357887 99999999 99999999
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe------------CC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA------------KK 509 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs------------~D 509 (1395)
++ .||+|+|||+.++ .+...+..|...... ... ...+.|++++.++++++ .+
T Consensus 314 ~~-~D~~i~iwd~~~~------------~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 314 TD-QKSEIRVYSASQW------------DCPLGLIPHPHRHFQ-HLT--PIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp EE-SSSCEEEEESSSS------------SSEEEECCCCCCCCS-SSC--CCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred Ec-CCCEEEEEECCCC------------ccceEEecccccccc-cce--eEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence 77 9999999999887 777777666533211 000 11244555555555543 34
Q ss_pred CeEEEEEcCCCC
Q 039790 510 NAIYAIHMDYGP 521 (1395)
Q Consensus 510 g~I~iWdl~~g~ 521 (1395)
+.|++||+.+|+
T Consensus 378 ~~i~iwd~~~g~ 389 (435)
T 4e54_B 378 RTIDVFDGNSGK 389 (435)
T ss_dssp CCEEEECSSSCC
T ss_pred CEEEEEECCCCc
Confidence 579999987764
No 57
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=5.7e-29 Score=297.07 Aligned_cols=259 Identities=17% Similarity=0.183 Sum_probs=205.6
Q ss_pred cceeeeeCCCCCEEEEEEecCC-CEEEEEEcCCeEEEEECCCCc-eEEe--ccCCCCeEEEEEeeC-CCCEEEEEECCCc
Q 039790 207 TPITKYISDPGLVLGRQIAVNR-NYICYGLKLGNIRILNIITAL-RSLL--RGHTQRVTDMAFFAE-DVHLLASASVDGR 281 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg-~~LasGs~DG~IrIWd~~~~~-~~~l--~~H~~~V~slaf~s~-dg~~LaSgs~Dgt 281 (1395)
..+..+.+|.+.|++++|++++ ++|++|+.||.|+|||+.++. ...+ .+|.+.|.+++| ++ ++.+|++|+.||+
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKF-NQFNTNQLFVSSIRGA 142 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEE-ETTEEEEEEEEETTTE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEe-CCCCCCEEEEEeCCCE
Confidence 4556778999999999999999 999999999999999999874 3333 479999999999 67 7899999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|++||+.... +..+.....+...+.+++|++++..+++++.++.+.+|+.. +.
T Consensus 143 i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~------------- 195 (383)
T 3ei3_B 143 TTLRDFSGSV------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH------------- 195 (383)
T ss_dssp EEEEETTSCE------------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC-------------
T ss_pred EEEEECCCCc------------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC-------------
Confidence 9999998532 22233233445779999999999988888878888888762 11
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC----CceeEEecCCCCCCeeEEEEeecCCC-CC
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK----STPLAVLRPYDGHPVNCVTFLIGPHP-QH 436 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s----g~~l~tl~~h~~~~V~sV~fs~~~~p-dg 436 (1395)
.+..+.+|...|++++|+|++..+|++|+.||+|++||+++ +.++..+ +|.+ .|++++|+ | ++
T Consensus 196 ------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~-~v~~~~~s----~~~~ 263 (383)
T 3ei3_B 196 ------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK-PVNAAYFN----PTDS 263 (383)
T ss_dssp ------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS-CEEEEEEC----TTTS
T ss_pred ------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC-ceEEEEEc----CCCC
Confidence 15667789999999999999844999999999999999998 6777777 6877 99999999 9 99
Q ss_pred cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccccccc---------ceEEEEeCCCCEEEEEe
Q 039790 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFF---------NQVVALNRAGLFLLANA 507 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~---------~~~l~~S~dg~~LaSgs 507 (1395)
.+|++++ .|+.|+|||++++ .++..+..|...... +...+ ...+.|+++|.+ +++
T Consensus 264 ~~l~~~~-~d~~i~iwd~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s 327 (383)
T 3ei3_B 264 TKLLTTD-QRNEIRVYSSYDW------------SKPDQIIIHPHRQFQ-HLTPIKATWHPMYDLIVAGRYPDDQL--LLN 327 (383)
T ss_dssp CEEEEEE-SSSEEEEEETTBT------------TSCSEEEECCBCCCT-TSCCCCCEECSSSSEEEEECBCCTTT--CTT
T ss_pred CEEEEEc-CCCcEEEEECCCC------------ccccccccccccccc-cccceEEeccCCCCceEEEecCCccc--ccC
Confidence 9999977 9999999999987 666666655432211 00001 113566777776 778
Q ss_pred CCCeEEEEEcCCCC
Q 039790 508 KKNAIYAIHMDYGP 521 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g~ 521 (1395)
.|+.|++||+.+++
T Consensus 328 ~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 328 DKRTIDIYDANSGG 341 (383)
T ss_dssp CCCCEEEEETTTCC
T ss_pred CCCeEEEEecCCCc
Confidence 99999999998764
No 58
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=9.6e-29 Score=320.09 Aligned_cols=252 Identities=18% Similarity=0.227 Sum_probs=210.7
Q ss_pred ceeeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCC------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 208 PITKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITA------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
....+.+|.+.|++++|+++ +++|++|+.||+|+|||+... ....+.+|...|.+++| ++++++|++|+.||
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~-s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL-SSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEE-CTTSSEEEEEETTS
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEE-CCCCCEEEEEeCCC
Confidence 34568899999999999986 479999999999999999763 34678999999999999 89999999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
+|+|||+.++. .+..+..|...|.+++|++++..+++++.++.+.+|+........ +
T Consensus 453 ~v~vwd~~~~~--------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-~-------- 509 (694)
T 3dm0_A 453 ELRLWDLAAGV--------------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-I-------- 509 (694)
T ss_dssp EEEEEETTTTE--------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-E--------
T ss_pred cEEEEECCCCc--------------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-e--------
Confidence 99999999876 455667888999999999999988888888888888753211000 0
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLT-TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~-~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.....+|...|.+++|+|++. .+|++|+.||+|+|||+++++++.++.+|.+ .|++|+|+ |+|++|
T Consensus 510 --------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~s----pdg~~l 576 (694)
T 3dm0_A 510 --------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVS----PDGSLC 576 (694)
T ss_dssp --------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC----TTSSEE
T ss_pred --------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEe----CCCCEE
Confidence 001146899999999999862 4899999999999999999999999999998 99999999 999999
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
++++ .||+|+|||+.++ +++..+..+. ....++|++++.+|++++ ++.|++||+..
T Consensus 577 ~sg~-~Dg~i~iwd~~~~------------~~~~~~~~~~----------~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~ 632 (694)
T 3dm0_A 577 ASGG-KDGVVLLWDLAEG------------KKLYSLEANS----------VIHALCFSPNRYWLCAAT-EHGIKIWDLES 632 (694)
T ss_dssp EEEE-TTSBCEEEETTTT------------EEEECCBCSS----------CEEEEEECSSSSEEEEEE-TTEEEEEETTT
T ss_pred EEEe-CCCeEEEEECCCC------------ceEEEecCCC----------cEEEEEEcCCCcEEEEEc-CCCEEEEECCC
Confidence 9977 9999999999988 7776665432 123689999999988766 56699999987
Q ss_pred C
Q 039790 520 G 520 (1395)
Q Consensus 520 g 520 (1395)
+
T Consensus 633 ~ 633 (694)
T 3dm0_A 633 K 633 (694)
T ss_dssp T
T ss_pred C
Confidence 5
No 59
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=3.2e-28 Score=282.86 Aligned_cols=281 Identities=16% Similarity=0.202 Sum_probs=221.4
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc----eEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL----RSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~----~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
...+|...|++++|++++++|++|+ ||.|+|||+.++. ...+. +|...|.+++| ++++++|++++.||.|++
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL-LPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEE-CTTSSEEEEEESSSEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEE-cCCCCEEEEEcCCCcEEE
Confidence 3347999999999999999999999 9999999998762 23333 79999999999 899999999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||+.+++. ........+...+.+++|++++..+++++.++.+.+|+.....
T Consensus 124 ~d~~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~----------------- 174 (337)
T 1gxr_A 124 WDLAAPTP------------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT----------------- 174 (337)
T ss_dssp EECCCC--------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------
T ss_pred EECCCCCc------------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------------
Confidence 99987651 1334456677889999999999888888888888888764321
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
....+.+|...|.+++|+|++ .+|++++.||.|++||+++++.+..+. |.+ .+.+++|+ |++.+|++++
T Consensus 175 ---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~-~v~~~~~s----~~~~~l~~~~- 243 (337)
T 1gxr_A 175 ---LVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQHD-FTS-QIFSLGYC----PTGEWLAVGM- 243 (337)
T ss_dssp ---EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-CSS-CEEEEEEC----TTSSEEEEEE-
T ss_pred ---eeeeeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEeeec-CCC-ceEEEEEC----CCCCEEEEEc-
Confidence 156677899999999999998 899999999999999999999988886 454 89999999 9999999976
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~ 524 (1395)
.|+.|++||+.++ .. ..+..|...+. .+.|+++|.+|++++.||.|++|++..+..
T Consensus 244 ~~~~i~~~~~~~~------------~~-~~~~~~~~~v~---------~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-- 299 (337)
T 1gxr_A 244 ESSNVEVLHVNKP------------DK-YQLHLHESCVL---------SLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-- 299 (337)
T ss_dssp TTSCEEEEETTSS------------CE-EEECCCSSCEE---------EEEECTTSSEEEEEETTSEEEEEETTTCCE--
T ss_pred CCCcEEEEECCCC------------Ce-EEEcCCcccee---------EEEECCCCCEEEEecCCCcEEEEECCCCeE--
Confidence 8999999999876 43 34555555443 599999999999999999999999987541
Q ss_pred CcceeeeeeeeccccEEEEecCCC-CcC--cCCCCeEEEEEc
Q 039790 525 STRMDYIAEFTVTMPILSLTGTTT-DAS--PDGEHIVQIYCV 563 (1395)
Q Consensus 525 ~~~~~~i~~f~~~~~ils~~~~~~-d~~--~s~dg~V~lWdv 563 (1395)
+..+.....+.++..... ..+ .+.||.|++|++
T Consensus 300 ------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 300 ------IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ------EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ------EEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 112222233433333320 111 346777777775
No 60
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9e-29 Score=300.82 Aligned_cols=275 Identities=15% Similarity=0.227 Sum_probs=210.9
Q ss_pred cceeee-eCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCC---Cc---eEEeccCCCCeEEEEEeeCCCCEEEEEEC
Q 039790 207 TPITKY-ISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIIT---AL---RSLLRGHTQRVTDMAFFAEDVHLLASASV 278 (1395)
Q Consensus 207 ~~i~~l-~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~---~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~ 278 (1395)
..+..+ .+|.+.|++++|++ ++++|++|+.||+|+|||+.+ +. .....+|.+.|++|+| ++++.+|++|+.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITM-IPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEE-CTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEE-eCCCCEEEEEeC
Confidence 556677 78999999999999 999999999999999999977 42 1222269999999999 789999999999
Q ss_pred CCcEEEEECC---CCCCCCCCcccccceEEEEEEecC-CCCCccEEE--EeCCCCeEEEEEeCCeEEEEEcCCCCccccc
Q 039790 279 DGRFFIWNIT---EGPDEEDKPQILGKIVVAIQILAD-GDSVHPRVC--WHPHKQEILMLAIGNRILKIDSNRVGKGERF 352 (1395)
Q Consensus 279 DgtV~IWdl~---tg~~~~~~~~~~~~~i~~l~~~~~-~~~~v~~v~--~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~ 352 (1395)
||+|++||+. .++... ...+..+..+.+... +...+.++. +++++..+++++.++.+.+|+.....
T Consensus 132 dg~i~vwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----- 203 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVK---FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE----- 203 (437)
T ss_dssp TSEEEEEEEEEEEETTEEE---EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-----
T ss_pred CCEEEEEEeccccCCceee---ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-----
Confidence 9999999995 443111 011112222222221 455666666 55777777777777777777764321
Q ss_pred cCCCCCccCccccccceEEEcc--cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEe
Q 039790 353 SAEEPLKCPVDELINGVQLVGK--HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFL 429 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l~~--h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs 429 (1395)
.+..+.+ |.+.|++++|+|++ .+|++|+.||+|++||+++++++.++. +|.. .|++++|+
T Consensus 204 ---------------~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~ 266 (437)
T 3gre_A 204 ---------------RLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA-PITHVEVC 266 (437)
T ss_dssp ---------------EEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCE-EEEEEEEC
T ss_pred ---------------eeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCC-ceEEEEec
Confidence 1455666 88999999999998 899999999999999999999999986 6766 89999887
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccc-----------------ccccce
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLE-----------------DAFFNQ 492 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~-----------------~~~~~~ 492 (1395)
+..++++.+|++++ .||.|+|||+.++ +++..+..|...+.... ....+.
T Consensus 267 ~~~s~~~~~l~s~~-~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 333 (437)
T 3gre_A 267 QFYGKNSVIVVGGS-SKTFLTIWNFVKG------------HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333 (437)
T ss_dssp TTTCTTEEEEEEES-TTEEEEEEETTTT------------EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred cccCCCccEEEEEc-CCCcEEEEEcCCC------------cEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence 55557888888865 9999999999988 89999987764332110 111234
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 493 VVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 493 ~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.++|+ ++.+|++|+.|+.|++||+..++
T Consensus 334 ~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 334 TISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred EEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 68888 88999999999999999998764
No 61
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.8e-28 Score=292.80 Aligned_cols=274 Identities=16% Similarity=0.258 Sum_probs=225.5
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeee-CCCCCEEEEEEecCCCEEEEEE
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYI-SDPGLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~-~h~~~V~~va~Spdg~~LasGs 235 (1395)
.+..+++++.|+.|++|+... |+ ....+. .|...|.+++|++++++|++|+
T Consensus 102 s~~~l~~~~~d~~v~lw~~~~--~~--------------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 102 SNLNVVAVALERNVYVWNADS--GS--------------------------VSALAETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp CTTSEEEEEETTEEEEEETTT--CC--------------------------EEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred cCCCEEEEECCCeEEEeeCCC--Cc--------------------------EeEeeecCCCCCEEEEEECCCCCEEEEEC
Confidence 346688899999999999541 11 111222 3788999999999999999999
Q ss_pred cCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 236 KLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 236 ~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
.||.|+|||+.++ .+..+.+|...|.+++| ++++|++|+.||.|++||+.... ..+..+..|.
T Consensus 154 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~ 217 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIAN-------------HQIGTLQGHS 217 (401)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSS-------------CEEEEEECCS
T ss_pred CCCeEEEEECcCCeEEEEecCCCCceEEEEE---CCCEEEEEcCCCCEEEEecccCc-------------ceeeEEcCCC
Confidence 9999999999987 47788899999999999 56899999999999999998543 1345566788
Q ss_pred CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
..+.+++|++++..+++++.++.+.+|+..... ....+.+|...|.+++|+|++..++++
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--------------------~~~~~~~~~~~v~~~~~~p~~~~ll~~ 277 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI--------------------PKFTKTNHNAAVKAVAWCPWQSNLLAT 277 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCSS--------------------EEEEECCCSSCCCEEEECTTSTTEEEE
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--------------------ccEEecCCcceEEEEEECCCCCCEEEE
Confidence 999999999999888888888888888775321 155677899999999999998778888
Q ss_pred Ee--CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE-ecCCCeEEEEECCCCCCCCCCCCcccccE
Q 039790 395 AS--LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG-GPLNRELKIWASAEEEGWLLPSDIESWKC 471 (1395)
Q Consensus 395 gs--~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~-Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~ 471 (1395)
|+ .||.|++||+++++++..+..+ . .|.+++|+ |++.+|+++ |+.||.|+|||+.++ .+
T Consensus 278 ~~gs~d~~i~i~d~~~~~~~~~~~~~-~-~v~~~~~s----~~~~~l~~~~g~~dg~i~v~~~~~~------------~~ 339 (401)
T 4aez_A 278 GGGTMDKQIHFWNAATGARVNTVDAG-S-QVTSLIWS----PHSKEIMSTHGFPDNNLSIWSYSSS------------GL 339 (401)
T ss_dssp ECCTTTCEEEEEETTTCCEEEEEECS-S-CEEEEEEC----SSSSEEEEEECTTTCEEEEEEEETT------------EE
T ss_pred ecCCCCCEEEEEECCCCCEEEEEeCC-C-cEEEEEEC----CCCCeEEEEeecCCCcEEEEecCCc------------cc
Confidence 76 8999999999999999999754 4 79999999 999999886 447999999999876 44
Q ss_pred EE--EEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 472 TQ--TLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 472 l~--tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.. .+.+|...+. .++|+++|.+|++++.||.|++|++..++
T Consensus 340 ~~~~~~~~h~~~v~---------~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 340 TKQVDIPAHDTRVL---------YSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEEEEEECCSSCCC---------EEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred eeEEEecCCCCCEE---------EEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 43 4566665543 48999999999999999999999998865
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=2.7e-28 Score=288.24 Aligned_cols=315 Identities=14% Similarity=0.089 Sum_probs=231.6
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
.+.+.+++..|++++.|+.|++|+... + +...+..+.+|...|.+++|++++++
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~--------------------~------~~~~~~~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSG--------------------N------KWVQVHELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEET--------------------T------EEEEEEEEECCSSCEEEEEEETTTTE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCC--------------------C------cEEeeeeecCCCCcccEEEEeCCCCE
Confidence 355667778888888899999988331 0 01256677889999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 231 ICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
|++|+.||.|++||+.++. ...+.+|...|.+++| ++++++|++|+.||.|++||+..+.. .....
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~v~i~d~~~~~~----------~~~~~ 135 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW-APNEKKFAVGSGSRVISICYFEQEND----------WWVCK 135 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE-CTTSSEEEEEETTSSEEEEEEETTTT----------EEEEE
T ss_pred EEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEE-CCCCCEEEEEeCCCEEEEEEecCCCc----------ceeee
Confidence 9999999999999998874 4455789999999999 89999999999999999999997651 11223
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
.+...|...+.+++|++++..+++++.++.+.+|+......... .....+.. .......+..+.+|...|++++|+|+
T Consensus 136 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER-PAPTPWGS-KMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCC-CCCBTTBS-CCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccc-cccccccc-ccchhhheEecCCCCCeEEEEEECCC
Confidence 34466788999999999998888888888888888642111000 00000000 00011225667789999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCC-CCCCCCc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEG-WLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~-~~~~~~~ 466 (1395)
+ .+|++++.||.|++||+++++++..+.+|.. .|.+++|+ |++.+|++ | .|+.|++||+....+ |.+....
T Consensus 214 ~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~l~~-~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 214 G-SRVAWVSHDSTVCLADADKKMAVATLASETL-PLLAVTFI----TESSLVAA-G-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp S-SEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEE----ETTEEEEE-E-TTSSCEEEEEETTTTEEEECCCC
T ss_pred C-CEEEEEeCCCEEEEEECCCCceeEEEccCCC-CeEEEEEe----cCCCEEEE-E-eCCeEEEEEccCcCceEEEeecc
Confidence 8 8999999999999999999999999999987 99999999 89987776 5 799999999987111 0000000
Q ss_pred ---------------------ccccEE------EEE-eccCcccccccccccceEEEEeCCC---CEEEEEeCCCeEEEE
Q 039790 467 ---------------------ESWKCT------QTL-ELKSSAELRLEDAFFNQVVALNRAG---LFLLANAKKNAIYAI 515 (1395)
Q Consensus 467 ---------------------~~~~~l------~tl-~~h~~~i~~~~~~~~~~~l~~S~dg---~~LaSgs~Dg~I~iW 515 (1395)
..+... ..+ .+|...+ ..+..++++| .+|++|+.||.|++|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--------~~~~~~~~~g~~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV--------SQISVLSGGKAKCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE--------EEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred CccccchhhhcchhhhhhhcccccccccCccccccccccccCCc--------ceeEEecCCCcceeeEEEecCCCceEEE
Confidence 000000 111 1333332 2233466888 999999999999999
Q ss_pred EcCCC
Q 039790 516 HMDYG 520 (1395)
Q Consensus 516 dl~~g 520 (1395)
++..+
T Consensus 358 ~~~~~ 362 (372)
T 1k8k_C 358 DVRSL 362 (372)
T ss_dssp EHHHH
T ss_pred EecCh
Confidence 99764
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=6.6e-28 Score=295.60 Aligned_cols=285 Identities=14% Similarity=0.211 Sum_probs=225.3
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~Las 233 (1395)
..+++..|++++.||.|++||.. .+..+..+.+|.+.|++++|++++ +|++
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~----------------------------~~~~~~~~~~h~~~V~~l~~~~~~-~l~s 178 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSI----------------------------NKKFLLQLSGHDGGVWALKYAHGG-ILVS 178 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETT----------------------------TTEEEEEECCCSSCEEEEEECSTT-EEEE
T ss_pred EEECCCEEEEEcCCCcEEEEECC----------------------------CCcEEEEEeCCCcCEEEEEEcCCC-EEEE
Confidence 34456899999999999999944 124556778899999999999988 9999
Q ss_pred EEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEee-CCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc---------
Q 039790 234 GLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK--------- 302 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~--------- 302 (1395)
|+.||+|+|||+.++ ....+.+|.+.|.+++|+. +++.+|++|+.||+|++||+.++............
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred EeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence 999999999999988 5778899999999999943 67899999999999999999987632211100000
Q ss_pred eEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 303 IVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
....+.....|...+.++ ++++..+++++.++.+.+|+..... .+..+.+|...|+++
T Consensus 259 ~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~--------------------~~~~~~~~~~~v~~~ 316 (464)
T 3v7d_B 259 NPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK--------------------CLYILSGHTDRIYST 316 (464)
T ss_dssp CTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE--------------------EEEEECCCSSCEEEE
T ss_pred CeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc--------------------EEEEecCCCCCEEEE
Confidence 000234455566665554 6677778888888888888764321 156778899999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC
Q 039790 383 SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL 462 (1395)
Q Consensus 383 afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~ 462 (1395)
+|++++ .+|++|+.||+|++||+++++++.++.+|.. .|.++.|+ +.+|++++ .||+|++||+.++
T Consensus 317 ~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~------~~~l~s~s-~dg~v~vwd~~~~----- 382 (464)
T 3v7d_B 317 IYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTA-LVGLLRLS------DKFLVSAA-ADGSIRGWDANDY----- 382 (464)
T ss_dssp EEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEC------SSEEEEEE-TTSEEEEEETTTC-----
T ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc------CCEEEEEe-CCCcEEEEECCCC-----
Confidence 999998 8999999999999999999999999999997 99999996 57888876 9999999999887
Q ss_pred CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 463 PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 463 ~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+. +.. ....++|++++.+|++|+ ||.|++||+.+|+
T Consensus 383 -------~~~~~~~-~~~---------~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 383 -------SRKFSYH-HTN---------LSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp -------CEEEEEE-CTT---------CCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred -------ceeeeec-CCC---------CccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 5544443 121 123588999999999998 8999999999875
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1e-28 Score=297.92 Aligned_cols=318 Identities=10% Similarity=0.087 Sum_probs=228.3
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
+++++|+++|++|++|+.||.|++||+.++. ...+..| .+.++.++++++++|++|+.||.|+|||+.++.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------ 130 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL------ 130 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE------
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc------
Confidence 4478999999999999999999999998874 3344455 455554448999999999999999999998765
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
....+..|...+.+++|+|++..+++++.++.+.+|+...... +..+.+|.+
T Consensus 131 --------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--------------------~~~~~~h~~ 182 (420)
T 3vl1_A 131 --------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--------------------PRTLIGHRA 182 (420)
T ss_dssp --------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--------------------CEEEECCSS
T ss_pred --------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--------------------ceEEcCCCC
Confidence 4556678899999999999998888777778888887643211 466778999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC---CCCCeeEEEEeec-----------------CCCCCc
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY---DGHPVNCVTFLIG-----------------PHPQHI 437 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h---~~~~V~sV~fs~~-----------------~~pdg~ 437 (1395)
.|++++|+|++ .+|++|+.||+|++||+++++++..+..| .. .|.+++|.+. -+|+|+
T Consensus 183 ~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (420)
T 3vl1_A 183 TVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD-GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK 260 (420)
T ss_dssp CEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTC-CEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred cEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCC-CccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence 99999999998 89999999999999999999999999854 22 4555554211 018899
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec-cCcccccccccccceEEEEeCCCC-EEEEEeCCCeEEEE
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRAGL-FLLANAKKNAIYAI 515 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~Dg~I~iW 515 (1395)
+|++++ .||.|+|||++++ +.+..+.. |...+ ..++|+++|. +|++|+.||.|++|
T Consensus 261 ~l~~~~-~dg~i~i~d~~~~------------~~~~~~~~~~~~~v---------~~~~~~~~~~~~l~~g~~dg~i~vw 318 (420)
T 3vl1_A 261 YVIAGH-VSGVITVHNVFSK------------EQTIQLPSKFTCSC---------NSLTVDGNNANYIYAGYENGMLAQW 318 (420)
T ss_dssp EEEEEE-TTSCEEEEETTTC------------CEEEEECCTTSSCE---------EEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EEEEEc-CCCeEEEEECCCC------------ceeEEcccccCCCc---------eeEEEeCCCCCEEEEEeCCCeEEEE
Confidence 999876 9999999999987 66666643 33333 3599999999 99999999999999
Q ss_pred EcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCce------------eeecccceEEecC
Q 039790 516 HMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAI------------QQYALDLSQCLPP 581 (1395)
Q Consensus 516 dl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i------------~~~~~~~~~cl~~ 581 (1395)
|+..+.. .+..+.... ..++..+.......+ ++.|+.|+||++..... ...+.....++.+
T Consensus 319 d~~~~~~----~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (420)
T 3vl1_A 319 DLRSPEC----PVGEFLINE-GTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCY 393 (420)
T ss_dssp ETTCTTS----CSEEEEEST-TSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEE
T ss_pred EcCCCcC----chhhhhccC-CCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEE
Confidence 9987642 111222111 112222211110122 35789999999887311 1112222334443
Q ss_pred CCCC-----eecccCCCceEEEeecC
Q 039790 582 PLEN-----AELEKTDSNATRAFDVA 602 (1395)
Q Consensus 582 s~d~-----l~~~~sd~~v~~iWD~~ 602 (1395)
++++ +...+ +.+.+++|++.
T Consensus 394 s~~~~~~g~l~a~g-~~g~~~~~~~~ 418 (420)
T 3vl1_A 394 VSDDESNGEVLEVG-KNNFCALYNLS 418 (420)
T ss_dssp ECCSSSSCEEEEEE-TTTEEEEEESC
T ss_pred ccCCCCcceEEEEc-CCceEEEEecc
Confidence 3332 34444 45777799875
No 65
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.2e-28 Score=290.59 Aligned_cols=281 Identities=10% Similarity=0.076 Sum_probs=216.1
Q ss_pred ccCCCCC-CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCC
Q 039790 152 PTLPPPS-DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRN 229 (1395)
Q Consensus 152 ~s~p~p~-~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~ 229 (1395)
+.+.+.+ ..|++++.|+.|++|++... + ......+.+|...|.+++|++ +++
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~------------------------~~~~~~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQ--N------------------------KTSFIQGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTST--T------------------------CEEEECCCSTTCBEEEEEEETTEEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCc--c------------------------cceeeecCCcCCceeEEEeCCCCCC
Confidence 5556666 78999999999999994411 0 011222346999999999999 789
Q ss_pred EEEEEEcCCeEEEEECCCCceEEeccC---CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRGH---TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|++|+.||.|+|||+.+.....+..| ...|.+++| ++++.+|++|+.||.|++||+. +. .
T Consensus 133 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~d~~-~~--------------~ 196 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDV-SVSRQMLATGDSTGRLLLLGLD-GH--------------E 196 (383)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEE-ETTTTEEEEEETTSEEEEEETT-SC--------------E
T ss_pred EEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEE-CCCCCEEEEECCCCCEEEEECC-CC--------------E
Confidence 999999999999999998776666554 488999999 8999999999999999999994 44 3
Q ss_pred EEEecCCCCCccEEEEeCCCC-eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQ-EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~-~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
+..+..|...+.+++|+|++. .+++++.++.+.+|+....... ...+..+ +|...|++++|+
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK----------------NSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST----------------TCEEEEE-ECSSCEEEEEEC
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc----------------cceEEEe-cCCCceEEEEEc
Confidence 455667889999999999998 4555555666666666432110 0113334 699999999999
Q ss_pred c-CCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC----------------CCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 386 Q-WLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG----------------HPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 386 p-dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~----------------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
| ++ .+|++++.||.|+|||++++.++..+.+|.. ..+..++|+ |+|++ + |+.|+.
T Consensus 260 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s----~dg~~--s-~s~d~~ 331 (383)
T 3ei3_B 260 PTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY----PDDQL--L-LNDKRT 331 (383)
T ss_dssp TTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB----CCTTT--C-TTCCCC
T ss_pred CCCC-CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEec----CCccc--c-cCCCCe
Confidence 9 87 8999999999999999999988777775531 134446666 66666 4 458999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|+|||+.++ +++.++.++... .+...++|+++|.+|++++ |+.|++|+++.
T Consensus 332 i~iwd~~~~------------~~~~~l~~~~~~-------~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 332 IDIYDANSG------------GLVHQLRDPNAA-------GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEETTTC------------CEEEEECBTTBC-------SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEecCCC------------ceeeeecCCCCC-------ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999988 889999875411 1223579999999999997 99999999864
No 66
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=2.1e-29 Score=294.15 Aligned_cols=257 Identities=18% Similarity=0.213 Sum_probs=196.3
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWd 286 (1395)
.+.+|.+.|++++|+++|++||+|+.||+|+|||+.++ .+..+.+|.+.|++++|+++ ++++|++|+.||+|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 45689999999999999999999999999999999876 35678999999999999433 589999999999999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
+.++.. ..+..+..|...|.+++|+|+ +..+++++.++.+.+|+.......
T Consensus 88 ~~~~~~------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--------------- 140 (316)
T 3bg1_A 88 EENGTW------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--------------- 140 (316)
T ss_dssp CSSSCC------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE---------------
T ss_pred CCCCcc------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc---------------
Confidence 987641 123445678889999999998 445555556666777665432110
Q ss_pred cccceEEEcccCCCeEEEEEecCC----------------CcEEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCCeeE
Q 039790 365 LINGVQLVGKHDGEITELSMCQWL----------------TTRLASASLDGTVKIWDDRKS---TPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg----------------~~~LaSgs~Dg~IrIWDl~sg---~~l~tl~~h~~~~V~s 425 (1395)
.....+.+|...|.+++|+|++ ..+|++|+.|++|+|||++.+ .++.++.+|.+ .|++
T Consensus 141 --~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~ 217 (316)
T 3bg1_A 141 --EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRD 217 (316)
T ss_dssp --EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-CEEE
T ss_pred --ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-ceEE
Confidence 0012345799999999999973 268999999999999999765 57788999997 9999
Q ss_pred EEEeecCCCCC----cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC
Q 039790 426 VTFLIGPHPQH----IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 426 V~fs~~~~pdg----~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
|+|+ |++ .+|++++ .|++|+|||+.+... .. .....+..|...+ ..++|+++|.
T Consensus 218 v~~s----p~~~~~~~~las~s-~D~~v~iw~~~~~~~-------~~-~~~~~~~~~~~~v---------~~v~~sp~g~ 275 (316)
T 3bg1_A 218 VAWA----PSIGLPTSTIASCS-QDGRVFIWTCDDASS-------NT-WSPKLLHKFNDVV---------WHVSWSITAN 275 (316)
T ss_dssp EECC----CCSSCSCCEEEEEE-TTCEEEEEECSSTTC-------CC-CBCCEEEECSSCE---------EEEEECTTTC
T ss_pred EEec----CCCCCCCceEEEEc-CCCeEEEEEccCccc-------cc-hhhhhhhcCCCcE---------EEEEEcCCCC
Confidence 9999 776 7788866 999999999976300 00 1122334444433 3599999999
Q ss_pred EEEEEeCCCeEEEEEcCC
Q 039790 502 FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 502 ~LaSgs~Dg~I~iWdl~~ 519 (1395)
+|++++.|+.|++|+...
T Consensus 276 ~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 276 ILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEESSSCEEEEEECT
T ss_pred EEEEEcCCCeEEEEEECC
Confidence 999999999999999864
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6e-28 Score=277.73 Aligned_cols=286 Identities=12% Similarity=0.132 Sum_probs=223.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..+.+|.+.|.+++| +++++|++|+.||.|+|||+.++. ...+..|...|.+++| ++++.+|++|+.||.|++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCY-DSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEE-ETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEE-CCCCCEEEEecCCCeEEEE
Confidence 567889999999999999 999999999999999999998874 6678899999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
++....... .+..+..|...+.++.| ++..+++++.++.+.+|+. +.
T Consensus 87 ~~~~~~~~~-----------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~----------------- 133 (313)
T 3odt_A 87 PLFATSGED-----------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GS----------------- 133 (313)
T ss_dssp ETTCCTTSC-----------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TE-----------------
T ss_pred EeeecCCCC-----------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---Cc-----------------
Confidence 998754111 23345677888889999 4556777777777777761 11
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC-CCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP-YDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
....+..|...|.+++|++.++.+|++++.||.|++|| .+..+..+.. |.. .|.+++|+ |++. +++++
T Consensus 134 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~-~i~~~~~~----~~~~-~~~~~- 202 (313)
T 3odt_A 134 --LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHND-VVRHLAVV----DDGH-FISCS- 202 (313)
T ss_dssp --EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSS-CEEEEEEE----ETTE-EEEEE-
T ss_pred --EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcc-cEEEEEEc----CCCe-EEEcc-
Confidence 15667789999999999993338999999999999999 5677888887 766 99999999 8888 77766
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~ 524 (1395)
.|+.|++||++++ +++..+..|...+. .++|+++| .|++++.||.|++||+..++
T Consensus 203 ~dg~i~i~d~~~~------------~~~~~~~~~~~~i~---------~~~~~~~~-~l~~~~~dg~v~iwd~~~~~--- 257 (313)
T 3odt_A 203 NDGLIKLVDMHTG------------DVLRTYEGHESFVY---------CIKLLPNG-DIVSCGEDRTVRIWSKENGS--- 257 (313)
T ss_dssp TTSEEEEEETTTC------------CEEEEEECCSSCEE---------EEEECTTS-CEEEEETTSEEEEECTTTCC---
T ss_pred CCCeEEEEECCch------------hhhhhhhcCCceEE---------EEEEecCC-CEEEEecCCEEEEEECCCCc---
Confidence 9999999999988 89999998887654 49999999 58899999999999998754
Q ss_pred Ccceeeeeeeecc-ccEEEEecCCC-CcC-cCCCCeEEEEEcCCCce
Q 039790 525 STRMDYIAEFTVT-MPILSLTGTTT-DAS-PDGEHIVQIYCVQTQAI 568 (1395)
Q Consensus 525 ~~~~~~i~~f~~~-~~ils~~~~~~-d~~-~s~dg~V~lWdv~t~~i 568 (1395)
.+..+..+ ..+..+..... ..+ .+.|+.|++|++.++++
T Consensus 258 -----~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 258 -----LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp -----EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred -----eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCce
Confidence 22222222 23333333320 111 34567777777776643
No 68
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-28 Score=277.68 Aligned_cols=266 Identities=17% Similarity=0.223 Sum_probs=222.0
Q ss_pred CCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEE
Q 039790 156 PPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 156 ~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs 235 (1395)
+++..|++++.||.|++|++. .......+..|...|.+++|++++++|++|+
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 78 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKD----------------------------DQWLGTVVYTGQGFLNSVCYDSEKELLLFGG 78 (313)
T ss_dssp EETTEEEEEETTSEEEEEEES----------------------------SSEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEEcCCcEEEEECC----------------------------CCEEEEEeecCCccEEEEEECCCCCEEEEec
Confidence 456788999999999999832 1133455667889999999999999999999
Q ss_pred cCCeEEEEECCCC----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec
Q 039790 236 KLGNIRILNIITA----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA 311 (1395)
Q Consensus 236 ~DG~IrIWd~~~~----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~ 311 (1395)
.||.|++|++... ....+.+|...|.+++| ++++|++|+.||.|++|| .+. .+..+.
T Consensus 79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d--~~~--------------~~~~~~ 139 (313)
T 3odt_A 79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF---QDGVVISGSWDKTAKVWK--EGS--------------LVYNLQ 139 (313)
T ss_dssp TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEE--TTE--------------EEEEEE
T ss_pred CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe---cCCEEEEEeCCCCEEEEc--CCc--------------EEEecc
Confidence 9999999998764 36788899999999999 578999999999999999 332 345566
Q ss_pred CCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc-cCCCeEEEEEecCCC
Q 039790 312 DGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK-HDGEITELSMCQWLT 389 (1395)
Q Consensus 312 ~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~-h~~~V~slafspdg~ 389 (1395)
.+...+.+++|++ ++..+++++.++.+.+|+... ....+.. |...|.+++|++++
T Consensus 140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------------------~~~~~~~~~~~~i~~~~~~~~~- 196 (313)
T 3odt_A 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----------------------VIKTFSGIHNDVVRHLAVVDDG- 196 (313)
T ss_dssp CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE----------------------EEEEECSSCSSCEEEEEEEETT-
T ss_pred cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc----------------------eEEEEeccCcccEEEEEEcCCC-
Confidence 7888899999998 777777777777887777211 1445555 89999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccc
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
. |++++.||.|++||+++++++..+.+|.+ .|++++|+ |++ .|++++ .||.|++||+.++
T Consensus 197 ~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~----~~~-~l~~~~-~dg~v~iwd~~~~------------ 256 (313)
T 3odt_A 197 H-FISCSNDGLIKLVDMHTGDVLRTYEGHES-FVYCIKLL----PNG-DIVSCG-EDRTVRIWSKENG------------ 256 (313)
T ss_dssp E-EEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEC----TTS-CEEEEE-TTSEEEEECTTTC------------
T ss_pred e-EEEccCCCeEEEEECCchhhhhhhhcCCc-eEEEEEEe----cCC-CEEEEe-cCCEEEEEECCCC------------
Confidence 5 99999999999999999999999999997 99999999 888 577766 9999999999988
Q ss_pred cEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 470 KCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 470 ~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+++..+..|...+. .++|+++|. +++++.||.|++|++..++
T Consensus 257 ~~~~~~~~~~~~i~---------~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 257 SLKQVITLPAISIW---------SVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp CEEEEEECSSSCEE---------EEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred ceeEEEeccCceEE---------EEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 89999998876553 489999998 5568899999999998754
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-29 Score=305.38 Aligned_cols=304 Identities=14% Similarity=0.158 Sum_probs=222.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC-CCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN-RNY 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd-g~~ 230 (1395)
+.+.+++..|++++.|+.|++|++.... .....+..+.+|...|.+++|+++ +++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 128 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEAN------------------------NAINSMARFSNHSSSVKTVKFNAKQDNV 128 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTT------------------------SCCCEEEECCCSSSCCCEEEECSSSTTB
T ss_pred EEECCCCCeEEEEccCCeEEEeeccccc------------------------ccccchhhccCCccceEEEEEcCCCCCE
Confidence 5556677888888888888888843110 001355677889999999999998 899
Q ss_pred EEEEEcCCeEEEEECCCCc------e----EEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCCCCccc
Q 039790 231 ICYGLKLGNIRILNIITAL------R----SLLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~------~----~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
|++|+.||.|+|||+.++. . ..+.+|...|.+++| +++ +.+|++|+.||.|++||+.+++
T Consensus 129 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~-------- 199 (416)
T 2pm9_A 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW-NQSLAHVFASAGSSNFASIWDLKAKK-------- 199 (416)
T ss_dssp EEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE-CSSCTTEEEEESSSSCEEEEETTTTE--------
T ss_pred EEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe-CCCCCcEEEEEcCCCCEEEEECCCCC--------
Confidence 9999999999999998864 1 234679999999999 777 7899999999999999999876
Q ss_pred ccceEEEEEEecCC------CCCccEEEEeCCCCeEEEEEeCC----eEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 300 LGKIVVAIQILADG------DSVHPRVCWHPHKQEILMLAIGN----RILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~------~~~v~~v~~sp~~~~lla~g~~~----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
.+..+..+ ...+.+++|+|++..+++++..+ .+.+|+....... .
T Consensus 200 ------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-------------------~ 254 (416)
T 2pm9_A 200 ------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-------------------L 254 (416)
T ss_dssp ------EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-------------------S
T ss_pred ------cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-------------------c
Confidence 23333333 67899999999986566555554 6777766442211 3
Q ss_pred EEEc-ccCCCeEEEEEec-CCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC-cEEEEEecCC
Q 039790 370 QLVG-KHDGEITELSMCQ-WLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH-IVLITGGPLN 446 (1395)
Q Consensus 370 ~~l~-~h~~~V~slafsp-dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg-~~L~s~Gs~D 446 (1395)
..+. +|...|++++|+| ++ .+|++++.||+|++||+++++++..+.+|.+ .|++++|+ |++ .+|++++ .|
T Consensus 255 ~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s----~~~~~~l~s~~-~d 327 (416)
T 2pm9_A 255 QTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFA----PEAPDLFACAS-FD 327 (416)
T ss_dssp BCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEEC----TTCTTEEEECC-SS
T ss_pred EEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEEC----CCCCCEEEEEe-cC
Confidence 3455 7999999999999 66 8999999999999999999999999999987 99999999 998 6777755 99
Q ss_pred CeEEEEECCCCCCCCCCCC---cccccEEEEEec-----cCccccc-----cc-ccccceEEEEeCCCCEEEEEeCCCeE
Q 039790 447 RELKIWASAEEEGWLLPSD---IESWKCTQTLEL-----KSSAELR-----LE-DAFFNQVVALNRAGLFLLANAKKNAI 512 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~---~~~~~~l~tl~~-----h~~~i~~-----~~-~~~~~~~l~~S~dg~~LaSgs~Dg~I 512 (1395)
+.|+|||+.+......... .........+.. |...+.. .. ....+..++|+++|++|++++.|+.|
T Consensus 328 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v 407 (416)
T 2pm9_A 328 NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV 407 (416)
T ss_dssp SEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred CcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence 9999999987632111100 000000000000 1000000 00 01122358999999999999999999
Q ss_pred EEEEcCCC
Q 039790 513 YAIHMDYG 520 (1395)
Q Consensus 513 ~iWdl~~g 520 (1395)
+||++.++
T Consensus 408 ~~w~~~~~ 415 (416)
T 2pm9_A 408 SITNPKIS 415 (416)
T ss_dssp CCBCCCCC
T ss_pred EEEEeccC
Confidence 99998763
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=2.7e-29 Score=306.60 Aligned_cols=285 Identities=13% Similarity=0.092 Sum_probs=213.1
Q ss_pred ccCCC-CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCC
Q 039790 152 PTLPP-PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRN 229 (1395)
Q Consensus 152 ~s~p~-p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~ 229 (1395)
+.+.| .+..|++|+.||.|++||+...+ ...+..+.+|.+.|++++|+| +++
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~--------------------------~~~~~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKD--------------------------KPTFIKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCS--------------------------CCEEECCCSSSCCCCEEEECSSCTT
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCC--------------------------ceeEEEccCCCCCEEEEEEeCCCCC
Confidence 44444 34689999999999999954211 123345668999999999998 789
Q ss_pred EEEEEEcCCeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|++|+.||+|+|||+.++....+.. +...+.+++| ++++.+|++|+.||+|++||+....
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~dg~i~~wd~~~~~--------------- 242 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV-SASSRMVVTGDNVGNVILLNMDGKE--------------- 242 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEE-ETTTTEEEEECSSSBEEEEESSSCB---------------
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEE-CCCCCEEEEEeCCCcEeeeccCcce---------------
Confidence 99999999999999999886554443 3446889999 8999999999999999999987532
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
+..+..|...|.+++|+|++..+++++.. +.+.+|+........ .+....+|...|++++|+
T Consensus 243 ~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-----------------~~~~~~~h~~~v~~~~~s 305 (435)
T 4e54_B 243 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-----------------SFLYSLPHRHPVNAACFS 305 (435)
T ss_dssp CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-----------------CCSBCCBCSSCEEECCBC
T ss_pred eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc-----------------eEEEeeeccccccceeEC
Confidence 22345678889999999999877776664 555566554322110 012234699999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCC-----CeeEEEEeecCCCCCcEEEEEec-----------CCCeE
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH-----PVNCVTFLIGPHPQHIVLITGGP-----------LNREL 449 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~-----~V~sV~fs~~~~pdg~~L~s~Gs-----------~Dg~I 449 (1395)
|+| .+|++|+.||+|+|||++++.+...+.+|... .+..+.|+ +++.+++++++ .++.|
T Consensus 306 pdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 306 PDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH----PRYNLIVVGRYPDPNFKSCTPYELRTI 380 (435)
T ss_dssp TTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC----SSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred CCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc----CCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence 998 89999999999999999999998888776531 23455666 66666666542 34689
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEec-cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+|||..++ +++..+.. |...+ ..+++|+++|.+|++|+ |+.|+||+++.|+
T Consensus 381 ~iwd~~~g------------~~~~~l~~~~~~~v--------~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 381 DVFDGNSG------------KMMCQLYDPESSGI--------SSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp EEECSSSC------------CEEEEECCSSCCCC--------CCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEEECCCC------------cEEEEEeCCCCCcE--------EEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 99999988 88877753 33332 33568999999999876 7899999998864
No 71
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.6e-27 Score=291.14 Aligned_cols=317 Identities=15% Similarity=0.210 Sum_probs=244.0
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
.....+.+|.+.|.. +++++|++|++|+.||.|+|||+.++ ....+.+|.+.|++++| . +++|++|+.||+|++|
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-R--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEE-E--TTEEEEEETTSCEEEE
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEe-c--CCEEEEEeCCCeEEEE
Confidence 345678899887533 35667999999999999999999987 47789999999999999 3 6799999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++ .+..+..|...+.++.|+ +..+++++.++.+.+|+.... .
T Consensus 185 d~~~~~--------------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-~----------------- 230 (445)
T 2ovr_B 185 NAETGE--------------CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-Q----------------- 230 (445)
T ss_dssp ETTTTE--------------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-C-----------------
T ss_pred ECCcCc--------------EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-c-----------------
Confidence 999876 455667788889999996 455777777777777776432 1
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.+..+.+|...|++++| ++ .+|++|+.||.|++||+++++++.++.+|.+ .|.++.| ++.+|++++ .
T Consensus 231 --~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~------~~~~l~~~~-~ 297 (445)
T 2ovr_B 231 --CLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF------DGIHVVSGS-L 297 (445)
T ss_dssp --EEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE------CSSEEEEEE-T
T ss_pred --EEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE------CCCEEEEEe-C
Confidence 15667789999999999 55 7999999999999999999999999999987 9999999 477888876 9
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPAS 525 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~ 525 (1395)
|+.|++||+.++ +++.++..|...+ .++..++.+|++|+.||.|++||+..+.
T Consensus 298 d~~i~i~d~~~~------------~~~~~~~~~~~~v-----------~~~~~~~~~l~~~~~dg~i~vwd~~~~~---- 350 (445)
T 2ovr_B 298 DTSIRVWDVETG------------NCIHTLTGHQSLT-----------SGMELKDNILVSGNADSTVKIWDIKTGQ---- 350 (445)
T ss_dssp TSCEEEEETTTC------------CEEEEECCCCSCE-----------EEEEEETTEEEEEETTSCEEEEETTTCC----
T ss_pred CCeEEEEECCCC------------CEEEEEcCCcccE-----------EEEEEeCCEEEEEeCCCeEEEEECCCCc----
Confidence 999999999988 8899998877543 3344568899999999999999998754
Q ss_pred cceeeeeeee-ccccEEEEecCCCCcC--cCCCCeEEEEEcCCCceee-e-------cccceEEecCCCCC--eecccCC
Q 039790 526 TRMDYIAEFT-VTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQQ-Y-------ALDLSQCLPPPLEN--AELEKTD 592 (1395)
Q Consensus 526 ~~~~~i~~f~-~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~~-~-------~~~~~~cl~~s~d~--l~~~~sd 592 (1395)
.+..+.... ...++.++.... ..+ ++.||.|+||++.+++... + +.....++.+++++ +++++.|
T Consensus 351 -~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 351 -CLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp -EEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred -EEEEEccCCCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC
Confidence 222222211 123444444333 333 4579999999999987642 2 23446788888886 4555544
Q ss_pred Cc---eEEEeecCC
Q 039790 593 SN---ATRAFDVAN 603 (1395)
Q Consensus 593 ~~---v~~iWD~~t 603 (1395)
+. .+.+||...
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 32 377999853
No 72
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=2.8e-27 Score=289.04 Aligned_cols=303 Identities=16% Similarity=0.229 Sum_probs=238.7
Q ss_pred CCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEE
Q 039790 154 LPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 154 ~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~Las 233 (1395)
+.+.+..|++++.||.|++|+.. .+..+..+.+|.+.|.++.|+ +++|++
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~----------------------------~~~~~~~~~~h~~~v~~~~~~--~~~l~s 174 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAV----------------------------TGKCLRTLVGHTGGVWSSQMR--DNIIIS 174 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETT----------------------------TCCEEEECCCCSSCEEEEEEE--TTEEEE
T ss_pred EEEcCCEEEEEECCCcEEEEECC----------------------------CCcEEEEEcCCCCCEEEEEec--CCEEEE
Confidence 44556889999999999999943 123456677899999999997 679999
Q ss_pred EEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
|+.||.|++||+.++ ....+.+|...|.+++| ++++|++|+.||+|++||+.+++ .+..+..
T Consensus 175 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~s~s~dg~i~~wd~~~~~--------------~~~~~~~ 237 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQ--------------CLHVLMG 237 (445)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCC--------------EEEEEEC
T ss_pred EeCCCeEEEEECCcCcEEEEECCCCCcEEEEEe---cCCEEEEEeCCCEEEEEECCCCc--------------EEEEEcC
Confidence 999999999999988 47788999999999999 46789999999999999999877 4555667
Q ss_pred CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEE
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRL 392 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~L 392 (1395)
|...+.++.| ++..+++++.++.+.+|+.... ..+..+.+|...|.+++| ++ .+|
T Consensus 238 ~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~~~~--~~-~~l 292 (445)
T 2ovr_B 238 HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE--------------------TCLHTLQGHTNRVYSLQF--DG-IHV 292 (445)
T ss_dssp CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT--------------------EEEEEECCCSSCEEEEEE--CS-SEE
T ss_pred CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC--------------------cEeEEecCCCCceEEEEE--CC-CEE
Confidence 8888989988 6667777777888888876431 115667789999999999 55 799
Q ss_pred EEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEE
Q 039790 393 ASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l 472 (1395)
++|+.||.|++||+++++++.++.+|.. .+.++.++ +.+|++++ .||.|++||+.++ +++
T Consensus 293 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~------~~~l~~~~-~dg~i~vwd~~~~------------~~~ 352 (445)
T 2ovr_B 293 VSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMELK------DNILVSGN-ADSTVKIWDIKTG------------QCL 352 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCCS-CEEEEEEE------TTEEEEEE-TTSCEEEEETTTC------------CEE
T ss_pred EEEeCCCeEEEEECCCCCEEEEEcCCcc-cEEEEEEe------CCEEEEEe-CCCeEEEEECCCC------------cEE
Confidence 9999999999999999999999999987 89988885 56888866 9999999999988 888
Q ss_pred EEEecc---CcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeee---eccccEEEEecC
Q 039790 473 QTLELK---SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEF---TVTMPILSLTGT 546 (1395)
Q Consensus 473 ~tl~~h---~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f---~~~~~ils~~~~ 546 (1395)
.++..+ ...+ ..+.| ++.+|++|+.||.|++||+.+++ .+..+..+ .....+.++...
T Consensus 353 ~~~~~~~~~~~~v---------~~~~~--~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s 416 (445)
T 2ovr_B 353 QTLQGPNKHQSAV---------TCLQF--NKNFVITSSDDGTVKLWDLKTGE-----FIRNLVTLESGGSGGVVWRIRAS 416 (445)
T ss_dssp EEECSTTSCSSCE---------EEEEE--CSSEEEEEETTSEEEEEETTTCC-----EEEEEEECTTGGGTCEEEEEEEC
T ss_pred EEEccCCCCCCCE---------EEEEE--CCCEEEEEeCCCeEEEEECCCCc-----eeeeeeccccCCCCceEEEEEec
Confidence 888873 3322 23555 57899999999999999998864 22222111 122345444444
Q ss_pred CCCcC----cCCCCe----EEEEEcCC
Q 039790 547 TTDAS----PDGEHI----VQIYCVQT 565 (1395)
Q Consensus 547 ~~d~~----~s~dg~----V~lWdv~t 565 (1395)
. +.. ++.||. |.|||+..
T Consensus 417 ~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 417 N-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp S-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred C-CEEEEEEcccCCCCccEEEEEECCC
Confidence 3 221 345565 99999875
No 73
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=2.8e-27 Score=274.85 Aligned_cols=276 Identities=12% Similarity=0.147 Sum_probs=224.4
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeee--CCCCCEEEEEEecCC
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYI--SDPGLVLGRQIAVNR 228 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~--~h~~~V~~va~Spdg 228 (1395)
.+.+.+.+..|++++ |+.|++|++.... ....+..+. +|...|.+++|++++
T Consensus 56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~-------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~ 109 (337)
T 1gxr_A 56 AVTISNPTRHVYTGG-KGCVKVWDISHPG-------------------------NKSPVSQLDCLNRDNYIRSCKLLPDG 109 (337)
T ss_dssp EEEECSSSSEEEEEC-BSEEEEEETTSTT-------------------------CCSCSEEEECSCTTSBEEEEEECTTS
T ss_pred EEEEecCCcEEEEcC-CCeEEEEECCCCC-------------------------ceeeeecccccCCCCcEEEEEEcCCC
Confidence 356666777888887 8888888844210 001222222 688999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCc---eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 229 NYICYGLKLGNIRILNIITAL---RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~---~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
++|++|+.||.|++||+.++. ...+.+|...|.+++| ++++++|++++.||.|++||+.+++
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~v~~~d~~~~~-------------- 174 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI-SPDSKVCFSCCSDGNIAVWDLHNQT-------------- 174 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTE--------------
T ss_pred CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCc--------------
Confidence 999999999999999999874 5678889999999999 8899999999999999999999876
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
.+..+..|...+.+++|+|++..+++++.++.+.+|+...... ...+ .|...+.+++|+
T Consensus 175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------------------~~~~-~~~~~v~~~~~s 233 (337)
T 1gxr_A 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ--------------------LQQH-DFTSQIFSLGYC 233 (337)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------------------EEEE-ECSSCEEEEEEC
T ss_pred eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce--------------------Eeee-cCCCceEEEEEC
Confidence 4455667888999999999998888888888888887643211 2223 478899999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
|++ .+|++++.||.|++||++++.. ..+..|.+ .|.+++|+ |++++|++++ .||.|++||+.++
T Consensus 234 ~~~-~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~-~v~~~~~~----~~~~~l~~~~-~dg~i~~~~~~~~-------- 297 (337)
T 1gxr_A 234 PTG-EWLAVGMESSNVEVLHVNKPDK-YQLHLHES-CVLSLKFA----YCGKWFVSTG-KDNLLNAWRTPYG-------- 297 (337)
T ss_dssp TTS-SEEEEEETTSCEEEEETTSSCE-EEECCCSS-CEEEEEEC----TTSSEEEEEE-TTSEEEEEETTTC--------
T ss_pred CCC-CEEEEEcCCCcEEEEECCCCCe-EEEcCCcc-ceeEEEEC----CCCCEEEEec-CCCcEEEEECCCC--------
Confidence 998 8999999999999999998875 46778887 99999999 9999999977 8999999999887
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+.+..+. |...+ ..+.|++++.+|++++.||.|++|++.
T Consensus 298 ----~~~~~~~-~~~~v---------~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 298 ----ASIFQSK-ESSSV---------LSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ----CEEEEEE-CSSCE---------EEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ----eEEEEec-CCCcE---------EEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 6654433 33332 258999999999999999999999973
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=9e-28 Score=315.46 Aligned_cols=254 Identities=18% Similarity=0.175 Sum_probs=223.0
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
...+.+.+|.+.|.+++|+|+|++|++|+.||.|+|||+.++ ....+.+|.+.|.+++| ++++.+|++|+.||.|+||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-EGGGTEEEEEETTSEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEE-eCCCCEEEEEeCCCeEEEE
Confidence 456788999999999999999999999999999999999887 46788899999999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++ .+..+..|...+.+++|+|++..+++++.++.+.+|+......
T Consensus 83 ~~~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----------------- 131 (814)
T 3mkq_A 83 NYNTGE--------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------------- 131 (814)
T ss_dssp ETTTCC--------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-----------------
T ss_pred ECCCCc--------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-----------------
Confidence 999887 4555677889999999999999888777778888887643211
Q ss_pred ccceEEEcccCCCeEEEEEec-CCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC--CCcEEEEE
Q 039790 366 INGVQLVGKHDGEITELSMCQ-WLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP--QHIVLITG 442 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafsp-dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p--dg~~L~s~ 442 (1395)
....+.+|...|.+++|+| ++ .+|++++.||+|++||++++.....+..+....|.+++|+ | ++.+|+++
T Consensus 132 --~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~~~ 204 (814)
T 3mkq_A 132 --LEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY----PLPDKPYMITA 204 (814)
T ss_dssp --EEEEEECCSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEEC----CSTTCCEEEEE
T ss_pred --EEEEEcCCCCcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEE----ECCCCCEEEEE
Confidence 1466778999999999999 55 8999999999999999999988888887763489999998 6 89999987
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+ .||.|++||+.++ +++.++..|...+. .++|+++|.+|++++.||.|++||+.++.
T Consensus 205 ~-~dg~i~~~d~~~~------------~~~~~~~~~~~~v~---------~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 205 S-DDLTIKIWDYQTK------------SCVATLEGHMSNVS---------FAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp C-TTSEEEEEETTTT------------EEEEEEECCSSCEE---------EEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred e-CCCEEEEEECCCC------------cEEEEEcCCCCCEE---------EEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6 9999999999988 88999988876653 48999999999999999999999998754
No 75
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.3e-28 Score=286.64 Aligned_cols=258 Identities=18% Similarity=0.221 Sum_probs=209.1
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCc
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGR 281 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~Dgt 281 (1395)
..+..+.+|.+.|++++|++++++|++|+.||.|+|||+..+ ....+.+|.+.|++++| +++ +.+|++|+.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW-AHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEe-CCCCCCCEEEEeccCCE
Confidence 356778899999999999999999999999999999999843 46688899999999999 655 899999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|+|||+.++. ...+.....|...+.+++|+|+ +..+++++.++.+.+|+.......
T Consensus 81 v~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------- 138 (379)
T 3jrp_A 81 VLIWKEENGR------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------- 138 (379)
T ss_dssp EEEEEEETTE------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----------
T ss_pred EEEEEcCCCc------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----------
Confidence 9999999864 2245566678889999999999 777777777888888876543211
Q ss_pred cCccccccceEEEcccCCCeEEEEEec-------------CCCcEEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQ-------------WLTTRLASASLDGTVKIWDDRKST----PLAVLRPYDGHP 422 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafsp-------------dg~~~LaSgs~Dg~IrIWDl~sg~----~l~tl~~h~~~~ 422 (1395)
....+.+|...|++++|+| ++ .+|++|+.||.|++||++++. ++..+.+|.+ .
T Consensus 139 --------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-~ 208 (379)
T 3jrp_A 139 --------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-W 208 (379)
T ss_dssp --------CEEEEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-C
T ss_pred --------eeEEecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-c
Confidence 1345678999999999999 46 899999999999999998764 5578889987 9
Q ss_pred eeEEEEeecCCCC---CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec--cCcccccccccccceEEEEe
Q 039790 423 VNCVTFLIGPHPQ---HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL--KSSAELRLEDAFFNQVVALN 497 (1395)
Q Consensus 423 V~sV~fs~~~~pd---g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~--h~~~i~~~~~~~~~~~l~~S 497 (1395)
|++++|+ |+ +.+|++++ .||.|+|||+.+++. ......+.. |... ...++|+
T Consensus 209 v~~~~~s----p~~~~~~~l~s~~-~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~---------v~~~~~s 265 (379)
T 3jrp_A 209 VRDVAWS----PTVLLRSYLASVS-QDRTCIIWTQDNEQG---------PWKKTLLKEEKFPDV---------LWRASWS 265 (379)
T ss_dssp EEEEEEC----CCCSSSEEEEEEE-TTSCEEEEEESSTTS---------CCEEEESSSSCCSSC---------EEEEEEC
T ss_pred EeEEEEC----CCCCCCCeEEEEe-CCCEEEEEeCCCCCc---------cceeeeeccccCCCc---------EEEEEEc
Confidence 9999999 99 88888876 999999999987611 112222222 2222 2358999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Q 039790 498 RAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 498 ~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
++|.+|++++.||.|++|++..+
T Consensus 266 ~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 266 LSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCEEEEecCCCcEEEEeCCCC
Confidence 99999999999999999999853
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-29 Score=310.69 Aligned_cols=316 Identities=11% Similarity=0.050 Sum_probs=211.9
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCce-----EEeccCCCCeEEEEEeeCC------CCEEEEEECCCcEEEEECCCCCCC
Q 039790 225 AVNRNYICYGLKLGNIRILNIITALR-----SLLRGHTQRVTDMAFFAED------VHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 225 Spdg~~LasGs~DG~IrIWd~~~~~~-----~~l~~H~~~V~slaf~s~d------g~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
++++++|++|+.||+|+|||+.++.. ..+.+|.+.|++|+| +++ +.+||+|+.||+|+|||+..+.+.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~w-sp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKW-HEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEE-CSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEE-CCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 44455566677899999999987742 356788899999999 554 679999999999999999876522
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
......... ....+..|...+++++|++++ .|++++.++.+.+|+...... ....+.
T Consensus 249 ~~~~~~~~~---p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~-------------------~~~~~~ 305 (524)
T 2j04_B 249 VHVFKMCEK---PSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV-------------------PSFYDQ 305 (524)
T ss_dssp SSEEECCCS---CSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS-------------------CSEEEE
T ss_pred cccceeecC---ceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC-------------------ceEEee
Confidence 100000000 112355678899999999864 555555566666666532111 145577
Q ss_pred ccCCCeEEE--EEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 374 KHDGEITEL--SMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 374 ~h~~~V~sl--afspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
+|.+.|++| +|++++..+||||+.||+|+|||+++++++.++.+|.. ..|.+|+|+ |++..|++++ .|++|+
T Consensus 306 ~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs----p~~~~l~s~~-~d~tv~ 380 (524)
T 2j04_B 306 VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC----PQIYSYIYSD-GASSLR 380 (524)
T ss_dssp CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE----TTTTEEEEEC-SSSEEE
T ss_pred cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeC----CCcCeEEEeC-CCCcEE
Confidence 899999999 56776547999999999999999999998888887753 158999999 9999988866 899999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceee
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDY 530 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~ 530 (1395)
|||++++ .++.++.+|...+. .++|+|+|.+|++|+.|++|++|++..+. +..
T Consensus 381 lwd~~~~------------~~~~~l~gH~~~V~---------sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~------~~~ 433 (524)
T 2j04_B 381 AVPSRAA------------FAVHPLVSRETTIT---------AIGVSRLHPMVLAGSADGSLIITNAARRL------LHG 433 (524)
T ss_dssp EEETTCT------------TCCEEEEECSSCEE---------EEECCSSCCBCEEEETTTEEECCBSCSST------TTC
T ss_pred EEECccc------------ccceeeecCCCceE---------EEEeCCCCCeEEEEECCCEEEEEechHhh------ccc
Confidence 9999988 88888988887664 48999999999999999999999986431 111
Q ss_pred eee---eeccccEEEEecCCCCcCcCCCCeEEEEE------c--CCCce--eeecccceEEecCCCCC----eecccCCC
Q 039790 531 IAE---FTVTMPILSLTGTTTDASPDGEHIVQIYC------V--QTQAI--QQYALDLSQCLPPPLEN----AELEKTDS 593 (1395)
Q Consensus 531 i~~---f~~~~~ils~~~~~~d~~~s~dg~V~lWd------v--~t~~i--~~~~~~~~~cl~~s~d~----l~~~~sd~ 593 (1395)
... ......++.+.... ++ +.+++|+ . ....+ ...+...+.|+.|++++ +..+++++
T Consensus 434 ~~~~~~~~~~~~v~~v~~sp-----~g-~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~ 507 (524)
T 2j04_B 434 IKNSSATQKSLRLWKWDYSI-----KD-DKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSA 507 (524)
T ss_dssp C------CCCCEEEECBCCS-----SS-CEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTT
T ss_pred cccCccceeeeEEEEeccCC-----CC-CeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccC
Confidence 110 00111233444333 11 1344444 1 12222 22344556788888874 55566677
Q ss_pred ceEEEeecC
Q 039790 594 NATRAFDVA 602 (1395)
Q Consensus 594 ~v~~iWD~~ 602 (1395)
+++|+|++.
T Consensus 508 g~vrlw~l~ 516 (524)
T 2j04_B 508 GLLTLEYLS 516 (524)
T ss_dssp SEEEEEECS
T ss_pred ceEEEEEcc
Confidence 999999974
No 77
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.4e-28 Score=289.31 Aligned_cols=263 Identities=16% Similarity=0.163 Sum_probs=207.8
Q ss_pred CCCCEEEEEEecC----CCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECC
Q 039790 215 DPGLVLGRQIAVN----RNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 215 h~~~V~~va~Spd----g~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~ 288 (1395)
|...|++++|+++ |++|++|+.||.|+|||+.++ .+..+.+|...|.+++| ++ ++.+|++|+.||+|++||+.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF-HPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE-CSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE-CCCCCCEEEEEeCCCeEEEEEee
Confidence 7788999999999 679999999999999999987 46788899999999999 67 89999999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEe---cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccc------cccCCCCCc
Q 039790 289 EGPDEEDKPQILGKIVVAIQIL---ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGE------RFSAEEPLK 359 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~---~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~------~~s~~~~~~ 359 (1395)
+++ .+..+ ..+...+.+++|++++..+++++.++.+.+|+........ .+..+....
T Consensus 147 ~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 147 TDT--------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp TTE--------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred cCe--------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 876 33444 5788899999999999988888888888888875421110 111111100
Q ss_pred c--CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce--------------eEEecCCCCCCe
Q 039790 360 C--PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP--------------LAVLRPYDGHPV 423 (1395)
Q Consensus 360 ~--~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~--------------l~tl~~h~~~~V 423 (1395)
. .............+|...|.+++|+ + .+|++++.||.|++||++++.. +..+.+|.. .|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 288 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DI 288 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CS
T ss_pred cccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC-cE
Confidence 0 0000111244556699999999999 4 7999999999999999988754 888899987 99
Q ss_pred eEEEEeecCCCC--CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc--CcccccccccccceEEEEeCC
Q 039790 424 NCVTFLIGPHPQ--HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK--SSAELRLEDAFFNQVVALNRA 499 (1395)
Q Consensus 424 ~sV~fs~~~~pd--g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h--~~~i~~~~~~~~~~~l~~S~d 499 (1395)
++++|+ |+ +.+|++++ .||.|+|||+.+++. .......+..| ...+ ..++|+++
T Consensus 289 ~~~~~s----~~~~~~~l~~~~-~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~~~~v---------~~~~~s~~ 346 (366)
T 3k26_A 289 WYMRFS----MDFWQKMLALGN-QVGKLYVWDLEVEDP--------HKAKCTTLTHHKCGAAI---------RQTSFSRD 346 (366)
T ss_dssp SCCCCE----ECTTSSEEEEEC-TTSCEEEEECCSSSG--------GGCEEEEECCTTCCSCE---------EEEEECTT
T ss_pred EEEEEc----CCCCCcEEEEEe-cCCcEEEEECCCCCC--------ccccceEEcccccCCce---------EEEEeCCC
Confidence 999999 77 99999876 999999999988711 11245567776 3333 35999999
Q ss_pred CCEEEEEeCCCeEEEEEcC
Q 039790 500 GLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 500 g~~LaSgs~Dg~I~iWdl~ 518 (1395)
|.+|++++.||.|++||+.
T Consensus 347 ~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 347 SSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCeEEEEeCCCEEEEEEec
Confidence 9999999999999999975
No 78
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=7.6e-29 Score=294.80 Aligned_cols=257 Identities=11% Similarity=0.025 Sum_probs=189.8
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
.+.+.+++..|++++.|+.|++|++.. + ....+..+.+|.+.|.+++|++++++
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~--------------------~------~~~~~~~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDG--------------------N------GWKHARTFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEET--------------------T------EEEECCCBCCCSSCEEEEEECTTTCC
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccC--------------------C------ceEEEEEEecCCceEEEEEEeCCCCE
Confidence 366677788999999999999999331 0 00345567789999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCc----eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 231 ICYGLKLGNIRILNIITAL----RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~----~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
|++|+.||.|+|||+.++. ...+.+|...|++++| ++++++|++|+.||+|++||+.++.... .
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------~ 137 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRW-SPNEDKFAVGSGARVISVCYFEQENDWW-----------V 137 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEEC-CTTSSCCEEEESSSCEEECCC-----CC-----------C
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEE-CCCCCEEEEEecCCeEEEEEECCcccce-----------e
Confidence 9999999999999999875 6778899999999999 8899999999999999999999875110 1
Q ss_pred EEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
+..+.. |...+.+++|+|++..+++++.++.+.+|+.......... ....+... ......+..+ +|.+.|++++|+
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~v~~~~~s 214 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP-EASVWGSR-LPFNTVCAEY-PSGGWVHAVGFS 214 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC-CSCSSCSC-CCEEEEEECC-CCSSSEEEEEEC
T ss_pred eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc-cccccccc-cchhhhhhcc-cCCceEEEEEEC
Confidence 233444 8899999999999988888888888888887432110000 00000000 0011113444 899999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCce----eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTP----LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~----l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
|++ .+|++|+.||+|+|||++++.+ +..+.+|.+ .|.+++|+ |+|++|++++ .|+ +.+|+...
T Consensus 215 p~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s----~~~~~l~~~~-~~~-~~~~~~~~ 281 (377)
T 3dwl_C 215 PSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWA----NESAIVAAGY-NYS-PILLQGNE 281 (377)
T ss_dssp TTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEE----ETTEEEEEES-SSS-EEEECCCC
T ss_pred CCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEc----CCCCEEEEEc-CCc-EEEEEeCC
Confidence 998 8999999999999999999987 888999987 99999999 9999888753 555 45777653
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.2e-29 Score=299.51 Aligned_cols=248 Identities=13% Similarity=0.080 Sum_probs=198.5
Q ss_pred eeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 212 YISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+..+.+.|++++|+++|++|++|+.||.|+|||+.++ ....+.+|.+.|++++| ++++++|++|+.||+|+|||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDW-APKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEE-CTTTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEE-eCCCCEEEEEeCCCeEEEEEcC
Confidence 4446789999999999999999999999999999986 46688899999999999 8999999999999999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
++.. .........|...+.+++|+|++..+++++.++.+.+|+....... ..
T Consensus 86 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------------~~ 137 (377)
T 3dwl_C 86 PDGT-----------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW-----------------WV 137 (377)
T ss_dssp ---C-----------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C-----------------CC
T ss_pred CCCc-----------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc-----------------ee
Confidence 8651 1123445668889999999999988888888888877765432110 01
Q ss_pred eEEEcc-cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC------------------CCceeEEecCCCCCCeeEEEEe
Q 039790 369 VQLVGK-HDGEITELSMCQWLTTRLASASLDGTVKIWDDR------------------KSTPLAVLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 369 ~~~l~~-h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~------------------sg~~l~tl~~h~~~~V~sV~fs 429 (1395)
...+.+ |...|++++|+|++ .+|++|+.||+|++||++ .+.++..+ +|.+ .|++++|+
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~s 214 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFS 214 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEEC
T ss_pred eeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEEC
Confidence 355666 99999999999998 899999999999999985 35677777 8887 99999999
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE----EEEEeccCcccccccccccceEEEEeCCCCEEEE
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC----TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA 505 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~----l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS 505 (1395)
|+|++|++++ .|++|+|||+.++ .+ +.++..|...+. .++|+++|.+|++
T Consensus 215 ----p~~~~l~~~~-~d~~i~iwd~~~~------------~~~~~~~~~~~~~~~~v~---------~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 215 ----PSGNALAYAG-HDSSVTIAYPSAP------------EQPPRALITVKLSQLPLR---------SLLWANESAIVAA 268 (377)
T ss_dssp ----TTSSCEEEEE-TTTEEC-CEECST------------TSCEEECCCEECSSSCEE---------EEEEEETTEEEEE
T ss_pred ----CCCCEEEEEe-CCCcEEEEECCCC------------CCcceeeEeecCCCCceE---------EEEEcCCCCEEEE
Confidence 9999999977 9999999999987 44 777888876553 4899999999999
Q ss_pred EeCCCeEEEEEcC
Q 039790 506 NAKKNAIYAIHMD 518 (1395)
Q Consensus 506 gs~Dg~I~iWdl~ 518 (1395)
++.|+.+ +|+..
T Consensus 269 ~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 269 GYNYSPI-LLQGN 280 (377)
T ss_dssp ESSSSEE-EECCC
T ss_pred EcCCcEE-EEEeC
Confidence 9877766 66655
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=1.4e-28 Score=293.51 Aligned_cols=245 Identities=8% Similarity=-0.002 Sum_probs=192.1
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEE-----------cCCeEEEEECCCCc--eE--------EeccCCCCeEEEEEeeCC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGL-----------KLGNIRILNIITAL--RS--------LLRGHTQRVTDMAFFAED 269 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs-----------~DG~IrIWd~~~~~--~~--------~l~~H~~~V~slaf~s~d 269 (1395)
.+.+|.+.|.++++ +++++++|+ .|+.||+|++.... +. ....+...+.+++| ++|
T Consensus 68 ~l~~~~~~v~s~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f-SpD 144 (365)
T 4h5i_A 68 ALEDNDDSPTAIDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYI-SRE 144 (365)
T ss_dssp ECCTTSCCCCEEEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEE-CTT
T ss_pred EccCCCCceEEEEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEE-cCC
Confidence 46678888887655 566777664 47889999987641 11 12345567999999 999
Q ss_pred CCEEEEE--ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCC
Q 039790 270 VHLLASA--SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVG 347 (1395)
Q Consensus 270 g~~LaSg--s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~ 347 (1395)
|++|+++ +.|++|+|||+.++. .+..+. +...|.+++|+|++.. ++++.++.+++||.....
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~--------------~~~~~~-~~~~V~~v~fspdg~~-l~s~s~~~~~~~~~~~~~ 208 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLT--------------EKFEIE-TRGEVKDLHFSTDGKV-VAYITGSSLEVISTVTGS 208 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTE--------------EEEEEE-CSSCCCEEEECTTSSE-EEEECSSCEEEEETTTCC
T ss_pred CCEEEEEECCCCCEEEEeECCCCc--------------EEEEeC-CCCceEEEEEccCCce-EEeccceeEEEEEeccCc
Confidence 9997755 478999999999876 222333 5667999999999974 555668888888875432
Q ss_pred ccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCce----eEEecCCC
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG----TVKIWDDRKSTP----LAVLRPYD 419 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg----~IrIWDl~sg~~----l~tl~~h~ 419 (1395)
.. ......+|...|++++|+|++ .++++++.|+ ++++||+..+.. ...+.+|.
T Consensus 209 ~~------------------~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 269 (365)
T 4h5i_A 209 CI------------------ARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF 269 (365)
T ss_dssp EE------------------EEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred ce------------------eeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCC
Confidence 21 022345688899999999998 8999999887 689999887643 45677888
Q ss_pred CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEE-eccCcccccccccccceEEEEeC
Q 039790 420 GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTL-ELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 420 ~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl-~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
. .|++|+|+ |||++|++++ .|++|+|||+.++ +++.++ .+|...+. .++|+|
T Consensus 270 ~-~V~~~~~S----pdg~~lasgs-~D~~V~iwd~~~~------------~~~~~~~~gH~~~V~---------~v~fSp 322 (365)
T 4h5i_A 270 K-GITSMDVD----MKGELAVLAS-NDNSIALVKLKDL------------SMSKIFKQAHSFAIT---------EVTISP 322 (365)
T ss_dssp S-CEEEEEEC----TTSCEEEEEE-TTSCEEEEETTTT------------EEEEEETTSSSSCEE---------EEEECT
T ss_pred C-CeEeEEEC----CCCCceEEEc-CCCEEEEEECCCC------------cEEEEecCcccCCEE---------EEEECC
Confidence 7 99999999 9999999976 9999999999988 898886 67877664 499999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC
Q 039790 499 AGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 499 dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
||.+|++|+.|++|+||++..+
T Consensus 323 dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999754
No 81
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=1.4e-27 Score=277.12 Aligned_cols=284 Identities=15% Similarity=0.129 Sum_probs=217.6
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeC--CCCEEEEEECCCcE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAE--DVHLLASASVDGRF 282 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~--dg~~LaSgs~DgtV 282 (1395)
..+.+|.+.|++++|++++++|++|+.||.|+|||+.++ ....+.+|...|++++| ++ ++.+|++|+.||+|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW-ASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEE-CCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEE-cCCCCCCEEEEEcCCCeE
Confidence 456789999999999999999999999999999999875 45677899999999999 55 69999999999999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
++||+.++.... .......+..+..|...+.+++|+|+ +..+++++.++.+.+|+.........+.......
T Consensus 84 ~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~- 157 (351)
T 3f3f_A 84 KLWEEDPDQEEC-----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK- 157 (351)
T ss_dssp EEEEECTTSCTT-----SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE-
T ss_pred EEEecCCCcccc-----cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc-
Confidence 999999875221 11223456667788899999999999 8778887888888888765433211111000000
Q ss_pred CccccccceEEEcccCCCeEEEEEecC--CCcEEEEEeCCCcEEEEeCCCCce--eEEecCCCCCCeeEEEEeecCCCCC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQW--LTTRLASASLDGTVKIWDDRKSTP--LAVLRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspd--g~~~LaSgs~Dg~IrIWDl~sg~~--l~tl~~h~~~~V~sV~fs~~~~pdg 436 (1395)
.......+|...+.+++|+|+ ++.+|++++.|+.+.+|+...+.. +..+.+|.+ .|++++|+ |++
T Consensus 158 ------~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~----p~~ 226 (351)
T 3f3f_A 158 ------VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWA----PSI 226 (351)
T ss_dssp ------SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS-CEEEEEEC----CCS
T ss_pred ------ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc-ceeEEEEC----CCC
Confidence 000112368889999999997 238999999999999998888765 778889987 99999999 888
Q ss_pred ----cEEEEEecCCCeEEEEECCCCCCCCC----------------------------------CCCcccccEEEEEecc
Q 039790 437 ----IVLITGGPLNRELKIWASAEEEGWLL----------------------------------PSDIESWKCTQTLELK 478 (1395)
Q Consensus 437 ----~~L~s~Gs~Dg~I~IWDl~tg~~~~~----------------------------------~~~~~~~~~l~tl~~h 478 (1395)
.+|++++ .||.|+|||++.+..... ..+....+++..+.+|
T Consensus 227 ~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 227 GRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp SCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred CCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 7888866 999999999986411000 0011233667777777
Q ss_pred CcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 479 SSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 479 ~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
...+. .++|+++|.+|++++.||.|++|++.++.
T Consensus 306 ~~~v~---------~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 306 NGEVW---------SVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SSCEE---------EEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cccEE---------EEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 76554 49999999999999999999999998864
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.1e-27 Score=281.55 Aligned_cols=298 Identities=11% Similarity=0.114 Sum_probs=217.5
Q ss_pred eeeCCCCCEEEEEEecC----CCEEEEEEcCCeEEEEECCCCc-eEEecc-----CCCCeEEEEEeeCC----CCEEEEE
Q 039790 211 KYISDPGLVLGRQIAVN----RNYICYGLKLGNIRILNIITAL-RSLLRG-----HTQRVTDMAFFAED----VHLLASA 276 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spd----g~~LasGs~DG~IrIWd~~~~~-~~~l~~-----H~~~V~slaf~s~d----g~~LaSg 276 (1395)
...+|.+.|++++|+|+ ..++++++.++.|+|||+.++. +..+.. |...|++++| +++ +.+|++|
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW-TYDSNTSHPLLAVA 91 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEE-EECTTTCCEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEe-ccCCCCCCCEEEEe
Confidence 34489999999999984 5567777777899999999763 444433 6688999999 677 6799999
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.||.|++||+.+++ .+..+..|...+.+++|+| ++..+++++.++.+.+|+......
T Consensus 92 ~~dg~i~v~d~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------- 150 (366)
T 3k26_A 92 GSRGIIRIINPITMQ--------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL------- 150 (366)
T ss_dssp ETTCEEEEECTTTCC--------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-------
T ss_pred cCCCEEEEEEchhce--------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-------
Confidence 999999999999877 4555667889999999999 676666666777787777643211
Q ss_pred CCCccCccccccceEEE---cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec----------------
Q 039790 356 EPLKCPVDELINGVQLV---GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR---------------- 416 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l---~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~---------------- 416 (1395)
...+ .+|...|++++|+|++ .+|++++.||.|++||+++++.+..+.
T Consensus 151 -------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (366)
T 3k26_A 151 -------------VAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 216 (366)
T ss_dssp -------------EEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCC
T ss_pred -------------EEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccc
Confidence 3444 5799999999999998 899999999999999999876554433
Q ss_pred ------------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCC--CCCcccccEEEEEeccCccc
Q 039790 417 ------------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLL--PSDIESWKCTQTLELKSSAE 482 (1395)
Q Consensus 417 ------------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~--~~~~~~~~~l~tl~~h~~~i 482 (1395)
+|.+ .|.+++|+ +.+|++++ .|+.|++||+.++..... ........++..+..|...+
T Consensus 217 ~~~~~~~~~~~~~~~~-~v~~~~~~------~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 288 (366)
T 3k26_A 217 QKIHFPDFSTRDIHRN-YVDCVRWL------GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI 288 (366)
T ss_dssp EEECCCSEEECSSCSS-CCCEEEEE------TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS
T ss_pred eeeccCccccccCCcc-eEEEEEEc------CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcE
Confidence 3887 99999996 56888866 999999999987732111 11222335678888887665
Q ss_pred ccccccccceEEEEeCC--CCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeecc---ccEEEEecCCC-CcC--cCC
Q 039790 483 LRLEDAFFNQVVALNRA--GLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVT---MPILSLTGTTT-DAS--PDG 554 (1395)
Q Consensus 483 ~~~~~~~~~~~l~~S~d--g~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~---~~ils~~~~~~-d~~--~s~ 554 (1395)
.. ++|+++ |.+|++|+.||.|++||+..+... ...+..+..+ ..+..+..... ..+ ++.
T Consensus 289 ~~---------~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 289 WY---------MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH----KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD 355 (366)
T ss_dssp SC---------CCCEECTTSSEEEEECTTSCEEEEECCSSSGG----GCEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred EE---------EEEcCCCCCcEEEEEecCCcEEEEECCCCCCc----cccceEEcccccCCceEEEEeCCCCCeEEEEeC
Confidence 44 788888 999999999999999999875421 1122223222 34444443330 112 345
Q ss_pred CCeEEEEEcCC
Q 039790 555 EHIVQIYCVQT 565 (1395)
Q Consensus 555 dg~V~lWdv~t 565 (1395)
||.|+|||+++
T Consensus 356 dg~i~iwd~~~ 366 (366)
T 3k26_A 356 DASIWRWDRLR 366 (366)
T ss_dssp TSEEEEEEC--
T ss_pred CCEEEEEEecC
Confidence 67777777653
No 83
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=2.5e-27 Score=283.02 Aligned_cols=332 Identities=16% Similarity=0.157 Sum_probs=214.8
Q ss_pred cceeeeeCCCCCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCce-EEe-------------ccCCCCeEEEEEeeC-CC
Q 039790 207 TPITKYISDPGLVLGRQIAV-NRNYICYGLKLGNIRILNIITALR-SLL-------------RGHTQRVTDMAFFAE-DV 270 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~~-~~l-------------~~H~~~V~slaf~s~-dg 270 (1395)
.....+.+|.+.|++++|++ ++++|++|+.||.|+|||+.++.. ..+ .+|...|.+++| ++ ++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 112 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW-YPHDT 112 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE-CTTCT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE-ccCCC
Confidence 45567788999999999999 999999999999999999998632 111 359999999999 66 88
Q ss_pred CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCC---eEEEEEeCCeEEEEEcCCCC
Q 039790 271 HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ---EILMLAIGNRILKIDSNRVG 347 (1395)
Q Consensus 271 ~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~---~lla~g~~~~ii~~d~~~~~ 347 (1395)
.+|++|+.||.|++||+.++. .+..+. +...+.++.|++.+. .+++++.++.+.+|+.....
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQ--------------TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTE--------------EEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred cEEEEEeCCCeEEEeeCCCCc--------------cceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 899999999999999999876 222222 456778899988654 67777777778777764321
Q ss_pred ccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eeEEe-----------
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST-PLAVL----------- 415 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~-~l~tl----------- 415 (1395)
.+..+.+|.+.|++++|+|++..+|++|+.||.|++||++++. ++..+
T Consensus 178 --------------------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 178 --------------------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp --------------------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred --------------------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceee
Confidence 1566778999999999999985579999999999999999875 56665
Q ss_pred ----cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccc
Q 039790 416 ----RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFN 491 (1395)
Q Consensus 416 ----~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~ 491 (1395)
.+|.+ .|++++|+ |++.+|++++ .||.|++||+.++ +....+..+...... ....
T Consensus 238 ~~~~~~~~~-~v~~~~~~----~~~~~l~~~~-~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~---~~~~ 296 (408)
T 4a11_B 238 ESANTAHNG-KVNGLCFT----SDGLHLLTVG-TDNRMRLWNSSNG------------ENTLVNYGKVCNNSK---KGLK 296 (408)
T ss_dssp TTSSCSCSS-CEEEEEEC----TTSSEEEEEE-TTSCEEEEETTTC------------CBCCCCCCCCCCCCS---SCCC
T ss_pred ccccccccC-ceeEEEEc----CCCCEEEEec-CCCeEEEEECCCC------------ccceecccccccccc---ccce
Confidence 56776 99999999 9999999977 9999999999987 333222222111100 0011
Q ss_pred eEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCCCcee
Q 039790 492 QVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 492 ~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t~~i~ 569 (1395)
.......+..+++++.|+.|++||+..+. .+..+..+......+.|.... ..+ .+.||.|++|++.+++..
T Consensus 297 -~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 297 -FTVSCGCSSEFVFVPYGSTIAVYTVYSGE-----QITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp -CEECCSSSSCEEEEEETTEEEEEETTTCC-----EEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC----
T ss_pred -eEEecCCCceEEEEecCCEEEEEECcCCc-----ceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCCcc
Confidence 12333445666677889999999998754 222222222222223343332 222 457999999999998654
Q ss_pred eeccc---ceEEecCCCCCeecccCCCceEEEeecCC
Q 039790 570 QYALD---LSQCLPPPLENAELEKTDSNATRAFDVAN 603 (1395)
Q Consensus 570 ~~~~~---~~~cl~~s~d~l~~~~sd~~v~~iWD~~t 603 (1395)
..... ...+.+...+.+.... +.+.+++|+...
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~ 405 (408)
T 4a11_B 370 PDDDETTTKSQLNPAFEDAWSSSD-EEGGTSAWSHPQ 405 (408)
T ss_dssp -------------------------------------
T ss_pred CCCCceEeccccccccceeecccC-ccCceeecCCcc
Confidence 32111 1112222223344444 446667998753
No 84
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=8.4e-27 Score=269.14 Aligned_cols=281 Identities=16% Similarity=0.243 Sum_probs=225.2
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+++++. ..|++| .|++|++||... |+.+ .+..+.+|...|++++|++++++|
T Consensus 31 l~WS~~-~~lAvg-~D~tV~iWd~~t--g~~~------------------------~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 31 VDWSSG-NVLAVA-LDNSVYLWSASS--GDIL------------------------QLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp EEECTT-SEEEEE-ETTEEEEEETTT--CCEE------------------------EEEECCSTTCCEEEEEECTTSSEE
T ss_pred EEECCC-CEEEEE-eCCEEEEEECCC--CCEE------------------------EEEEecCCCCeEEEEEECCCCCEE
Confidence 445544 355554 599999999541 2111 122345788899999999999999
Q ss_pred EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||+|+|||+.++. +..+.+|...+.++.+ ++.+|++|+.++.+++|+...+. ..+...
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~-------------~~~~~~ 146 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAE-------------HHVATL 146 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSS-------------CEEEEE
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCc-------------eeEEEE
Confidence 999999999999999984 7788999999988777 57899999999999999998765 144556
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..|...+..+.|++++..+++++.++.+.+|+....... .........|.+.|.+++|++++..
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~ 210 (318)
T 4ggc_A 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----------------WVPLQTFTQHQGAVKAVAWCPWQSN 210 (318)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB----------------SCCSEEECCCCSCEEEEEECTTSTT
T ss_pred cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc----------------ccceeeecccCCceEEEEecCCCCc
Confidence 678888999999999998888888888888876542211 0114556678899999999998866
Q ss_pred EE--EEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE-ecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 391 RL--ASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG-GPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 391 ~L--aSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~-Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
++ ++++.+++|++||.+.+........+. .+..+.|+ +++..++++ |+.|+.|+|||+.++
T Consensus 211 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~--~v~~~~~~----~~~~~~~~~sg~~d~~i~iwd~~~~---------- 274 (318)
T 4ggc_A 211 VLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWS----PHYKELISGHGFAQNQLVIWKYPTM---------- 274 (318)
T ss_dssp EEEEEECTTTCEEEEEETTTCCEEEEEECSS--CEEEEEEE----TTTTEEEEEECTTTCCEEEEETTTC----------
T ss_pred EEEEEecCCCCEEEEEeccccccccccccee--eeeeeeec----ccccceEEEEEcCCCEEEEEECCCC----------
Confidence 55 456778999999999998877776543 79999999 888887764 457999999999988
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+++.+|.+|.+.+.. ++|+++|.+|++|+.|++|+|||+..
T Consensus 275 --~~~~~l~gH~~~V~~---------l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 275 --AKVAELKGHTSRVLS---------LTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp --CEEEEECCCSSCEEE---------EEECTTSSCEEEEETTTEEEEECCSC
T ss_pred --cEEEEEcCCCCCEEE---------EEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999999877644 99999999999999999999999865
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.9e-27 Score=283.95 Aligned_cols=243 Identities=15% Similarity=0.185 Sum_probs=196.4
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+|...+.+..++.++..+++++.||.|+|||+.++. ...+. .|...|.+++| ++++.+|++|+.||.|++||+.+++
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKW-SHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEE-CCCCCEEEEECCCCeEEEEECcCCe
Confidence 454443333344445668888999999999999985 33333 38999999999 8899999999999999999999877
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.+..+..|...+.+++|+ +..+++++.++.+.+|+...... ....
T Consensus 168 --------------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~ 212 (401)
T 4aez_A 168 --------------KLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH-------------------QIGT 212 (401)
T ss_dssp --------------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC-------------------EEEE
T ss_pred --------------EEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc-------------------eeeE
Confidence 455666888899999994 45666666677777777643221 1566
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNREL 449 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I 449 (1395)
+.+|.+.|.+++|+|++ .+|++|+.||.|++||++++.++..+.+|.+ .|.+++|+ |++..++++|+ .|+.|
T Consensus 213 ~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~----p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWC----PWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp EECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEEC----TTSTTEEEEECCTTTCEE
T ss_pred EcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEEC----CCCCCEEEEecCCCCCEE
Confidence 77899999999999988 8999999999999999999999999999987 99999999 88876666653 69999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEE--EeCCCeEEEEEcCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA--NAKKNAIYAIHMDYG 520 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS--gs~Dg~I~iWdl~~g 520 (1395)
++||+.++ +++..+..+. .+ ..++|+++|.+|++ |+.||.|++|++..+
T Consensus 287 ~i~d~~~~------------~~~~~~~~~~-~v---------~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 287 HFWNAATG------------ARVNTVDAGS-QV---------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp EEEETTTC------------CEEEEEECSS-CE---------EEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred EEEECCCC------------CEEEEEeCCC-cE---------EEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 99999988 8888886433 22 35999999999999 448999999999764
No 86
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-28 Score=303.68 Aligned_cols=259 Identities=10% Similarity=0.049 Sum_probs=190.8
Q ss_pred eeeeCCCCCEEEEEEecC------CCEEEEEEcCCeEEEEECCCCc------------eEEeccCCCCeEEEEEeeCCCC
Q 039790 210 TKYISDPGLVLGRQIAVN------RNYICYGLKLGNIRILNIITAL------------RSLLRGHTQRVTDMAFFAEDVH 271 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spd------g~~LasGs~DG~IrIWd~~~~~------------~~~l~~H~~~V~slaf~s~dg~ 271 (1395)
..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. ...+.+|...|++++| +++ .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~-s~~-~ 278 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDF-LSP-T 278 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEE-SSS-S
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEe-cCC-C
Confidence 446678899999999996 5799999999999999998652 2367899999999999 554 5
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEE--EEeCCCCeEEEEEe-CCeEEEEEcCCCCc
Q 039790 272 LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRV--CWHPHKQEILMLAI-GNRILKIDSNRVGK 348 (1395)
Q Consensus 272 ~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v--~~sp~~~~lla~g~-~~~ii~~d~~~~~~ 348 (1395)
+|++|+.||+|++||+.++.. ....+..|...|.+| +|++++..+|++++ ++.+.+||... ++
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~-------------~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~ 344 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEV-------------PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IA 344 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSS-------------CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HH
T ss_pred eEEEEeCCCEEEEEECCCCCC-------------ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CC
Confidence 899999999999999987641 123355788889998 46676634555555 55555555432 21
Q ss_pred cccccCCCCCccCccccccceEEEcccCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEE
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDG--EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~--~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV 426 (1395)
. ...+.+|.. .|++++|+|++ ..|++++.|++|++||++++.++.++.+|.+ .|++|
T Consensus 345 ~-------------------~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sv 403 (524)
T 2j04_B 345 T-------------------TKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAI 403 (524)
T ss_dssp H-------------------HCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEE
T ss_pred c-------------------ccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEE
Confidence 1 223445543 58899999998 7899999999999999999999999999998 99999
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC---------------CCC-C-Cc---------------ccccEEEE
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW---------------LLP-S-DI---------------ESWKCTQT 474 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~---------------~~~-~-~~---------------~~~~~l~t 474 (1395)
+|+ |+|++|++++ .|++|+|||+...--. .+. + +. ....++.+
T Consensus 404 a~S----p~g~~l~Sgs-~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~ 478 (524)
T 2j04_B 404 GVS----RLHPMVLAGS-ADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAK 478 (524)
T ss_dssp ECC----SSCCBCEEEE-TTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC----------
T ss_pred EeC----CCCCeEEEEE-CCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceee
Confidence 999 9999999976 9999999997543000 000 0 00 01234445
Q ss_pred EeccCcccccccccccceEEEEeCCCC---EEEEEeCCCeEEEEEcCC
Q 039790 475 LELKSSAELRLEDAFFNQVVALNRAGL---FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 475 l~~h~~~i~~~~~~~~~~~l~~S~dg~---~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.+|...+. .++|+|++. +|++|+.||.|+||++..
T Consensus 479 l~gh~~~V~---------~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 479 IDAHGINIT---------CTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ---CCCSCC---------CEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ecCCCceEE---------EEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 555554433 489999964 999999999999999865
No 87
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=4.1e-27 Score=286.99 Aligned_cols=279 Identities=17% Similarity=0.250 Sum_probs=222.4
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
..+.+++..|++++.||.|++||.. .+..+..+.+|.+.|.+++| ++++|
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~----------------------------~~~~~~~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKN----------------------------TLECKRILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESS----------------------------SCCEEEEECCCSSCEEEEEC--CSSEE
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCC----------------------------CCeEEEEEcCCCCcEEEEEE--CCCEE
Confidence 4455677899999999999999943 12345667789999999988 89999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL 310 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~ 310 (1395)
++|+.||.|+|||+.++ ....+.+|...|.+++| ++.+|++|+.||+|++||+.++.. +......
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~ 252 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMASPTD-----------ITLRRVL 252 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC---CTTEEEEEETTSCEEEEECSSSSC-----------CEEEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE---cCCEEEEeeCCCcEEEEeCCCCCC-----------ceeeeEe
Confidence 99999999999999987 47788999999999999 356999999999999999998762 2234566
Q ss_pred cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 311 ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 311 ~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
..|...+.++.| ++..+++++.++.+.+|+.... . .+..+.+|...|.+++|+ + .
T Consensus 253 ~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~-------------------~~~~~~~~~~~v~~~~~~--~-~ 307 (435)
T 1p22_A 253 VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-E-------------------FVRTLNGHKRGIACLQYR--D-R 307 (435)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-C-------------------EEEEEECCSSCEEEEEEE--T-T
T ss_pred cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-c-------------------EEEEEcCCCCcEEEEEeC--C-C
Confidence 778888989998 5666777777777777776432 1 156677899999999995 4 7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCccccc
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWK 470 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~ 470 (1395)
+|++|+.||+|++||+++++++.++.+|.+ .|.+++|. +.+|++++ .||.|+|||+.++... .......
T Consensus 308 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~------~~~l~sg~-~dg~i~vwd~~~~~~~---~~~~~~~ 376 (435)
T 1p22_A 308 LVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFD------NKRIVSGA-YDGKIKVWDLVAALDP---RAPAGTL 376 (435)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEECC------SSEEEEEE-TTSCEEEEEHHHHTST---TSCTTTT
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEEeCCcC-cEEEEEec------CCEEEEEe-CCCcEEEEECCCCCCc---cccccch
Confidence 999999999999999999999999999997 99999984 77888876 9999999999776110 0011123
Q ss_pred EEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 471 CTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 471 ~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
++.++..|...+.. +.| ++.+|++++.||.|++||+..+.
T Consensus 377 ~~~~~~~h~~~v~~---------l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 377 CLRTLVEHSGRVFR---------LQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEEEECCCSSCCCC---------EEE--CSSCEEECCSSSEEEEEC-----
T ss_pred heeeccCCCCCeEE---------EEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 88899988877644 666 78999999999999999998754
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=289.03 Aligned_cols=275 Identities=12% Similarity=0.126 Sum_probs=204.7
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc------------eEEeccCC------------CCeEEEEEeeCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL------------RSLLRGHT------------QRVTDMAFFAEDV 270 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~------------~~~l~~H~------------~~V~slaf~s~dg 270 (1395)
|.+.|++++|+++|++||+|+.||.|+|||+.++. ...+.+|. +.|++++| ++++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~-~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW-LPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE-CCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE-cCCC
Confidence 56899999999999999999999999999998764 66888998 88999999 7777
Q ss_pred --CEEEEEECCCcEEEEECCCCCCCCC---------------------Cccccc-ce---EEEE-EEecCCCCCccEEEE
Q 039790 271 --HLLASASVDGRFFIWNITEGPDEED---------------------KPQILG-KI---VVAI-QILADGDSVHPRVCW 322 (1395)
Q Consensus 271 --~~LaSgs~DgtV~IWdl~tg~~~~~---------------------~~~~~~-~~---i~~l-~~~~~~~~~v~~v~~ 322 (1395)
.+|++|+.||+|++||+.++..... ++.... .. .... .+...|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7999999999999999986431000 000000 00 0111 224678899999999
Q ss_pred eCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 039790 323 HPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVK 402 (1395)
Q Consensus 323 sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~Ir 402 (1395)
+|++..++++ .++.+.+|+....+..... .. .....+.+|...|++++|+|++..+|++|+.||+|+
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~----------~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNI----------VD--IKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEE----------EE--CCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeee----------ee--cccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 9998766665 7777777776422211000 00 000024579999999999999767999999999999
Q ss_pred EEeCCCCce----eEEecCCCC-----------CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC-CCCCCCCCCc
Q 039790 403 IWDDRKSTP----LAVLRPYDG-----------HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE-EEGWLLPSDI 466 (1395)
Q Consensus 403 IWDl~sg~~----l~tl~~h~~-----------~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t-g~~~~~~~~~ 466 (1395)
+||++++.. +..+.+|.. ..|.+++|+ |+|++|++++ . +.|+|||+++ +
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~l~~~~-~-~~v~iwd~~~~~--------- 317 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS----HSGRYMMTRD-Y-LSVKVWDLNMEN--------- 317 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEEC----TTSSEEEEEE-S-SEEEEEETTCCS---------
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEEC----CCCCEEEEee-C-CeEEEEeCCCCc---------
Confidence 999999987 789988863 279999999 9999999876 6 9999999987 5
Q ss_pred ccccEEEEEeccCcccccc------cccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 467 ESWKCTQTLELKSSAELRL------EDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~------~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+++.++..|....... ...+-...++|+++|.+|++|+.||.|++||+..++
T Consensus 318 ---~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 318 ---RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp ---SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ---cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 7777888875432210 000001138999999999999999999999998864
No 89
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.1e-26 Score=283.28 Aligned_cols=239 Identities=16% Similarity=0.242 Sum_probs=201.1
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
...+|...|+|+.| ++++|++|+.||.|+|||+.++ ....+.+|.+.|.+++| ++++|++|+.||+|++||+.+
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSS
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCC
Confidence 33457778998766 8999999999999999999987 47788999999999999 789999999999999999998
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
++ .+..+..|...+.+++|++ +.+++++.++.+.+|+...... ....
T Consensus 203 ~~--------------~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~-----------------~~~~ 249 (435)
T 1p22_A 203 GE--------------MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD-----------------ITLR 249 (435)
T ss_dssp CC--------------EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC-----------------CEEE
T ss_pred Cc--------------EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC-----------------ceee
Confidence 87 4556667888899999964 4677777777777777643221 0113
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
..+.+|...|.+++| ++ .+|++|+.||+|++||+++++++.++.+|.+ .|.++.|. +.+|++++ .||.|
T Consensus 250 ~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~------~~~l~~g~-~dg~i 318 (435)
T 1p22_A 250 RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR------DRLVVSGS-SDNTI 318 (435)
T ss_dssp EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE------TTEEEEEE-TTSCE
T ss_pred eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC------CCEEEEEe-CCCeE
Confidence 667889999999999 45 7999999999999999999999999999987 99999996 57888876 99999
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
++||++++ +++.++.+|...+.. +.| ++.+|++|+.||.|++||+..+.
T Consensus 319 ~iwd~~~~------------~~~~~~~~h~~~v~~---------~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 319 RLWDIECG------------ACLRVLEGHEELVRC---------IRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EEEETTTC------------CEEEEECCCSSCEEE---------EEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred EEEECCCC------------CEEEEEeCCcCcEEE---------EEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 99999988 999999988766432 455 89999999999999999997654
No 90
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=4.2e-27 Score=271.92 Aligned_cols=245 Identities=14% Similarity=0.139 Sum_probs=193.3
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NRN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg~ 229 (1395)
+.+++++..|++++.|++|++|++... ....+..+.+|.+.|++++|++ +++
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------~~~~~~~l~gH~~~V~~v~~s~~~~g~ 68 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVWRVDWAHPKFGT 68 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSS--------------------------CBCCCEEECCCSSCEEEEEECCGGGCS
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCC--------------------------CcEEEEEEccccCCeEEEEecCCCcCC
Confidence 567778899999999999999994310 1135677889999999999986 489
Q ss_pred EEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 230 YICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
+|++|+.||+|+|||+.++ ....+.+|...|.+++| +++ +.+|++|+.||+|++||+.++...
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~-~p~~~g~~l~s~s~d~~v~~wd~~~~~~~----------- 136 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW-APHEYGPMLLVASSDGKVSVVEFKENGTT----------- 136 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEE-CCGGGCSEEEEEETTSEEEEEEBCSSSCB-----------
T ss_pred EEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEe-CcCCCCcEEEEEECCCcEEEEEecCCCce-----------
Confidence 9999999999999999886 45678899999999999 665 889999999999999999876310
Q ss_pred EEEEEecCCCCCccEEEEeCCC-------------CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHK-------------QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~-------------~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
....+..|...+.+++|+|++ ..+++++.++.+.+|+....... ......
T Consensus 137 -~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~----------------~~~~~~ 199 (297)
T 2pm7_B 137 -SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------------YVLEST 199 (297)
T ss_dssp -CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE----------------EEEEEE
T ss_pred -eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce----------------EEEEEE
Confidence 012345678889999999973 45555566667777765332110 011456
Q ss_pred EcccCCCeEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCc---eeEEe--cCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 372 VGKHDGEITELSMCQWL--TTRLASASLDGTVKIWDDRKST---PLAVL--RPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 372 l~~h~~~V~slafspdg--~~~LaSgs~Dg~IrIWDl~sg~---~l~tl--~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+.+|.+.|++++|+|++ +.+|++|+.|++|+|||++.+. ....+ .+|.+ .|++++|+ |+|++|++++
T Consensus 200 l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s----~~g~~las~~- 273 (297)
T 2pm7_B 200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWS----LSGNVLALSG- 273 (297)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEEC----SSSCCEEEEE-
T ss_pred ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEEC----CCCCEEEEEc-
Confidence 78999999999999985 4799999999999999998753 22334 46766 89999999 9999999977
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.|++|+||+....
T Consensus 274 ~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 274 GDNKVTLWKENLE 286 (297)
T ss_dssp TTSCEEEEEECTT
T ss_pred CCCcEEEEEECCC
Confidence 9999999998754
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=3.6e-27 Score=276.61 Aligned_cols=260 Identities=15% Similarity=0.181 Sum_probs=201.7
Q ss_pred CCCCCEEEEEEecC---CCEEEEEEcCCeEEEEECCCC--ceEEeccCCCCeEEEEEe-----eCCCCEEEEEECCCcEE
Q 039790 214 SDPGLVLGRQIAVN---RNYICYGLKLGNIRILNIITA--LRSLLRGHTQRVTDMAFF-----AEDVHLLASASVDGRFF 283 (1395)
Q Consensus 214 ~h~~~V~~va~Spd---g~~LasGs~DG~IrIWd~~~~--~~~~l~~H~~~V~slaf~-----s~dg~~LaSgs~DgtV~ 283 (1395)
+|...|.+++|+++ |++|++|+.||.|++||+.++ ....+.+|...|.+++|. ++++++|++|+.||+|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 68899999999998 799999999999999999986 477899999999999763 57899999999999999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEe-cCCCCCccEEE----EeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQIL-ADGDSVHPRVC----WHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~-~~~~~~v~~v~----~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
+||+.++.. .+..+... +.....+.+++ |++++..+++++.++.+.+|+.....
T Consensus 143 vwd~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------- 201 (357)
T 3i2n_A 143 VWDPRQKDD----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----------- 201 (357)
T ss_dssp EECTTSCSS----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----------
T ss_pred EEeCCCCCC----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----------
Confidence 999998751 11111111 11234677777 67888877777777888777764321
Q ss_pred ccCccccccceEEEcccCCCeEEEEEec---CCCcEEEEEeCCCcEEEEeCCCCceeEEec-----CCCCCCeeEEEEee
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQ---WLTTRLASASLDGTVKIWDDRKSTPLAVLR-----PYDGHPVNCVTFLI 430 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafsp---dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-----~h~~~~V~sV~fs~ 430 (1395)
......|...|++++|+| ++ .+|++|+.||.|++||++++.++..+. +|.. .|++++|+
T Consensus 202 ----------~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~- 268 (357)
T 3i2n_A 202 ----------LRWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHL- 268 (357)
T ss_dssp ----------EEEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEE-
T ss_pred ----------eeeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEEC-
Confidence 233456889999999999 77 899999999999999999887665554 8987 99999999
Q ss_pred cCCCCCc-EEEEEecCCCeEEEEECCCCCCCCC-------CCCcccccEEEEEeccCcccccccccccceEEEEeCCCCE
Q 039790 431 GPHPQHI-VLITGGPLNRELKIWASAEEEGWLL-------PSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF 502 (1395)
Q Consensus 431 ~~~pdg~-~L~s~Gs~Dg~I~IWDl~tg~~~~~-------~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~ 502 (1395)
|++. +|++++ .||.|+|||++.+..... ......++++..+..|...+. .++|+++|.+
T Consensus 269 ---~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~---------~~~~s~~~~~ 335 (357)
T 3i2n_A 269 ---PQNRELFLTAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS---------SLDWSPDKRG 335 (357)
T ss_dssp ---TTEEEEEEEEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE---------EEEECSSSTT
T ss_pred ---CCCCcEEEEEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee---------EEEEcCCCCe
Confidence 9998 677655 999999999987622110 001123367888888876654 4999999998
Q ss_pred EE-EEeCCCeEEEEEcCCC
Q 039790 503 LL-ANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 503 La-Sgs~Dg~I~iWdl~~g 520 (1395)
|+ +++.|+.|++|++...
T Consensus 336 l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 336 LCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEETTSEEEEEEECC-
T ss_pred EEEEecCCCcEEEEECCCc
Confidence 88 8999999999999764
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=278.95 Aligned_cols=250 Identities=12% Similarity=0.076 Sum_probs=194.7
Q ss_pred eeeeCCCCCEEEEEEecCCCEE-EEEEc---CCeEEEEECCCCce--EEeccCCCCeEEEEEeeCC---CCEEEEEECCC
Q 039790 210 TKYISDPGLVLGRQIAVNRNYI-CYGLK---LGNIRILNIITALR--SLLRGHTQRVTDMAFFAED---VHLLASASVDG 280 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~L-asGs~---DG~IrIWd~~~~~~--~~l~~H~~~V~slaf~s~d---g~~LaSgs~Dg 280 (1395)
..+.+|...|.+++|+|++.++ ++|+. ||.|+|||+.++.. ....+|...|.+++| +++ +.+|++|+.||
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTF-GATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEEC-TTCCTTTCCEEEEETTS
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEE-cCCCCCCceEEEecCCC
Confidence 3457899999999999999655 56665 99999999998853 334479999999999 777 79999999999
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEE------eCCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCW------HPHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~------sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
.|++||+.++.. .+..+..|...+.++.| ++++..+++++.++.+.+|+.......
T Consensus 91 ~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~----- 152 (357)
T 3i2n_A 91 NLHIWNLEAPEM-------------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP----- 152 (357)
T ss_dssp CEEEECTTSCSS-------------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC-----
T ss_pred eEEEEeCCCCCc-------------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc-----
Confidence 999999998651 12345577888888855 577877777777778887776443211
Q ss_pred CCCCccCccccccceEEEcccCC----CeEEEE----EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEE
Q 039790 355 EEPLKCPVDELINGVQLVGKHDG----EITELS----MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~----~V~sla----fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV 426 (1395)
...+..|.+ .|++++ |++++ .+|++|+.||.|++||+++++++.. ..|.. .|.++
T Consensus 153 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~-~v~~~ 215 (357)
T 3i2n_A 153 --------------VANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWE-TNIKN-GVCSL 215 (357)
T ss_dssp --------------SEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEE-EECSS-CEEEE
T ss_pred --------------ceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeee-cCCCC-ceEEE
Confidence 344444443 899998 67887 8999999999999999999987555 45666 89999
Q ss_pred EEeecCCC---CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEE-----EeccCcccccccccccceEEEEeC
Q 039790 427 TFLIGPHP---QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQT-----LELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 427 ~fs~~~~p---dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~t-----l~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
+|+ | ++.+|++++ .||.|++||++++ +++.. +..|...+. .+.|++
T Consensus 216 ~~~----~~~~~~~~l~~~~-~dg~i~i~d~~~~------------~~~~~~~~~~~~~~~~~v~---------~~~~~~ 269 (357)
T 3i2n_A 216 EFD----RKDISMNKLVATS-LEGKFHVFDMRTQ------------HPTKGFASVSEKAHKSTVW---------QVRHLP 269 (357)
T ss_dssp EES----CSSSSCCEEEEEE-STTEEEEEEEEEE------------ETTTEEEEEEEECCSSCEE---------EEEEET
T ss_pred EcC----CCCCCCCEEEEEC-CCCeEEEEeCcCC------------CcccceeeeccCCCcCCEE---------EEEECC
Confidence 999 8 899999976 9999999999876 33333 336665543 489999
Q ss_pred CCC-EEEEEeCCCeEEEEEcCCCC
Q 039790 499 AGL-FLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 499 dg~-~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
++. +|++++.||.|++||+..+.
T Consensus 270 ~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 270 QNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp TEEEEEEEEETTSEEEEEEEECCS
T ss_pred CCCcEEEEEeCCCcEEEeecCCCc
Confidence 998 89999999999999998754
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=1.5e-26 Score=276.26 Aligned_cols=308 Identities=10% Similarity=0.033 Sum_probs=220.2
Q ss_pred ccCCC-CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCC
Q 039790 152 PTLPP-PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRN 229 (1395)
Q Consensus 152 ~s~p~-p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~ 229 (1395)
+.+.+ .+..|++++.||.|++|++.............+.. .......+|...|.+++|++ ++.
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS---------------IGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE---------------ECTTCTTCCSSCEEEEEECTTCTT
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc---------------ccccccccCCCcEEEEEEccCCCc
Confidence 56667 78999999999999999955221111110000000 00112346899999999999 788
Q ss_pred EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeC---CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAE---DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~---dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|++|+.||.|++||+.++.......|...+.+++| .+ ++.+|++|+.||.|++||+.++. .
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------------~ 178 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHM-SPVSTKHCLVAVGTRGPKVQLCDLKSGS--------------C 178 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE-CSSCSSCCEEEEEESSSSEEEEESSSSC--------------C
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEe-ecCCCCCcEEEEEcCCCeEEEEeCCCcc--------------e
Confidence 999999999999999999875555568889999999 55 45599999999999999999876 2
Q ss_pred EEEecCCCCCccEEEEeCCCCeEE-EEEeCCeEEEEEcCCCCccc-cccCCCCCccCccccccceEEEcccCCCeEEEEE
Q 039790 307 IQILADGDSVHPRVCWHPHKQEIL-MLAIGNRILKIDSNRVGKGE-RFSAEEPLKCPVDELINGVQLVGKHDGEITELSM 384 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~ll-a~g~~~~ii~~d~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slaf 384 (1395)
+..+..|...+.+++|+|++..++ +++.++.+.+|+........ .+..... .........+.+|...|++++|
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG-----KKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT-----CSCCCTTTSSCSCSSCEEEEEE
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc-----ccceeeccccccccCceeEEEE
Confidence 344567888999999999999755 55556667767664432110 0000000 0000001223579999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 385 CQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 385 spdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
+|++ .+|++++.||.|++||+++++....+.++.. ..+...... ..+..+++++ .|+.|++||+.++
T Consensus 254 ~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~i~v~d~~~~--- 324 (408)
T 4a11_B 254 TSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC----GCSSEFVFVP-YGSTIAVYTVYSG--- 324 (408)
T ss_dssp CTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC----SSSSCEEEEE-ETTEEEEEETTTC---
T ss_pred cCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEec----CCCceEEEEe-cCCEEEEEECcCC---
Confidence 9998 8999999999999999999887665543321 012222222 3344555555 7999999999988
Q ss_pred CCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 461 LLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+++..+.+|...+. .++|+++|.+|++++.||.|++|++..++
T Consensus 325 ---------~~~~~~~~~~~~v~---------~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 325 ---------EQITMLKGHYKTVD---------CCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp ---------CEEEEECCCSSCEE---------EEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred ---------cceeeeccCCCeEE---------EEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 89999998887654 49999999999999999999999998865
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=9.7e-26 Score=273.65 Aligned_cols=239 Identities=15% Similarity=0.232 Sum_probs=189.9
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eE--EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RS--LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~--~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
-++..++||.+ ++||+|. |++|+|||..++. .. .+.+|.+.|++|+| +++|++|++|+.||+|+|||+.+++
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~f-spdg~~lasgs~Dg~v~iWd~~~~~-- 180 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQK-- 180 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTE--
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEE-CCCCCEEEEEECCCeEEEEEcCCCc--
Confidence 35677899975 5888876 8999999999985 33 44578889999999 8999999999999999999999876
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
.+..+..|...+.++.|++ ..+++++.++.+..|+...... .+..+.
T Consensus 181 ------------~~~~~~~h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~-------------------~~~~~~ 227 (420)
T 4gga_A 181 ------------RLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEH-------------------HVATLS 227 (420)
T ss_dssp ------------EEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSC-------------------EEEEEE
T ss_pred ------------EEEEEeCCCCceEEEeeCC--CEEEEEeCCCceeEeeecccce-------------------eeEEec
Confidence 5566777888887777753 4455555555666665433221 156778
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCCeeEEEEeecCCCCCcEE-EE-EecCCC
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST----PLAVLRPYDGHPVNCVTFLIGPHPQHIVL-IT-GGPLNR 447 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~----~l~tl~~h~~~~V~sV~fs~~~~pdg~~L-~s-~Gs~Dg 447 (1395)
+|...+..+.|++++ .+|++++.||.|+|||..+++ .+..+..|.+ .|.+++|+ |++..+ ++ +|+.|+
T Consensus 228 ~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~----p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 228 GHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWC----PWQSNVLATGGGTSDR 301 (420)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS-CEEEEEEC----TTCTTEEEEEECTTTC
T ss_pred ccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCC-ceeeeeeC----CCcccEEEEEeecCCC
Confidence 899999999999998 899999999999999998764 4677888887 99999999 766544 44 356899
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcCCCC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMDYGP 521 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~~g~ 521 (1395)
+|+|||+.++ .++..+..+... ..+.|++++..|++++ .|+.|+|||+.++.
T Consensus 302 ~I~iwd~~t~------------~~~~~~~~~~~v----------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 302 HIRIWNVCSG------------ACLSAVDAHSQV----------CSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp EEEEEETTTT------------EEEEEEECSSCE----------EEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred EEEEEeCCcc------------ccceeeccccce----------eeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 9999999998 888888776532 2478889999887765 79999999997753
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=1.6e-26 Score=278.41 Aligned_cols=273 Identities=16% Similarity=0.163 Sum_probs=217.6
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec-CCCEEEEEEcCC
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-NRNYICYGLKLG 238 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-dg~~LasGs~DG 238 (1395)
.+++++.||.|++|++.. .|+ ....+..+.+|.+.|++++|++ ++++|++|+.||
T Consensus 49 ~~~~~~~~g~i~v~~~~~-~~~-----------------------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg 104 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGK-TGR-----------------------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC 104 (402)
T ss_dssp EEBCCSSSCCEEEEETTC-CEE-----------------------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS
T ss_pred EEEEEcCCCEEEEEECcc-CCC-----------------------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC
Confidence 444678899999999431 110 0123456788999999999999 999999999999
Q ss_pred eEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCC-CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 239 NIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDV-HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 239 ~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg-~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
.|+|||+.++ ....+.+|...|.+++| ++++ ++|++|+.||+|+|||+.+++ .+..
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~p~~~~~l~s~~~dg~i~iwd~~~~~--------------~~~~ 169 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGA--------------AVLT 169 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEE-CSSBTTEEEEEETTSCEEEEETTTTE--------------EEEE
T ss_pred eEEEEEccCCCCccccCCceEEecCCCCeEEEEEE-CcCCCCEEEEEcCCCEEEEEECCCCC--------------ccEE
Confidence 9999999885 36788999999999999 7887 799999999999999999876 4445
Q ss_pred e--cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCC-eEEEEEe
Q 039790 310 L--ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGE-ITELSMC 385 (1395)
Q Consensus 310 ~--~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~-V~slafs 385 (1395)
+ ..|...+.+++|+|++..+++++.++.+.+|+..... .+..+ .+|.+. +.+++|+
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT--------------------VVAEKDRPHEGTRPVHAVFV 229 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--------------------EEEEEECSSCSSSCCEEEEC
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc--------------------eeeeeccCCCCCcceEEEEc
Confidence 5 6788899999999999988888888888888764321 13445 678776 8999999
Q ss_pred cCCCcEEEEE---eCCCcEEEEeCCCCce-eEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 386 QWLTTRLASA---SLDGTVKIWDDRKSTP-LAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 386 pdg~~~LaSg---s~Dg~IrIWDl~sg~~-l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
+++ .+|++| +.|+.|++||++++.. +..+. .|.. .|.+++|+ |++.+|+++|+.|+.|++||+.++
T Consensus 230 ~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s----~~~~~l~~~g~~dg~i~i~d~~~~--- 300 (402)
T 2aq5_A 230 SEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS-GVLLPFFD----PDTNIVYLCGKGDSSIRYFEITSE--- 300 (402)
T ss_dssp STT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS-SCEEEEEE----TTTTEEEEEETTCSCEEEEEECSS---
T ss_pred CCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCC-ceeEEEEc----CCCCEEEEEEcCCCeEEEEEecCC---
Confidence 998 899999 7999999999998754 44443 4554 89999999 999999877878999999999887
Q ss_pred CCCCCccccc-EEEEEeccC--cccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 461 LLPSDIESWK-CTQTLELKS--SAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 461 ~~~~~~~~~~-~l~tl~~h~--~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+ ++..+..+. ..+ ..++|++++.++++ .++.+++|++..+
T Consensus 301 ---------~~~~~~l~~~~~~~~v---------~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 301 ---------APFLHYLSMFSSKESQ---------RGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp ---------TTCEEEEEEECCSSCC---------SEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred ---------CcceEeecccccCCcc---------cceEEeccccccee--cceeEEEEEcCCC
Confidence 3 244444433 332 35999999999875 5679999999764
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.6e-26 Score=269.94 Aligned_cols=274 Identities=12% Similarity=0.094 Sum_probs=219.7
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC-E
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN-Y 230 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~-~ 230 (1395)
+.+.+.+..|++++.|+.|++|++.... .......+.+|...|.+++|+++++ +
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQA-------------------------KNVDLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTT-------------------------TEEEEEEEEECSSCEEEEEEEESSSEE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCC-------------------------ccccceeeeecCCceEEEEECCCCCcE
Confidence 4455566788888888888888833110 0012334457899999999999999 9
Q ss_pred EEEEEcCCeEEEEEC-CCCceEEecc--CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC---------CCCCCCCcc
Q 039790 231 ICYGLKLGNIRILNI-ITALRSLLRG--HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE---------GPDEEDKPQ 298 (1395)
Q Consensus 231 LasGs~DG~IrIWd~-~~~~~~~l~~--H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t---------g~~~~~~~~ 298 (1395)
|++|+.||.|++||+ .++....+.+ |...|.+++| ++ +.+|++|+.||.|++||+.+ ++....
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~-~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--- 146 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK-YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--- 146 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE-ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS---
T ss_pred EEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEe-CC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE---
Confidence 999999999999999 9988889999 9999999999 67 99999999999999999987 442221
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCC-CCccccccCCCCCccCccccccceEEEcccCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNR-VGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
+ .+...+.+++|++++ +++++.++.+.+|+... .... .......|..
T Consensus 147 -----------~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~------------------~~~~~~~~~~ 194 (342)
T 1yfq_A 147 -----------T-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN------------------GTIEESGLKY 194 (342)
T ss_dssp -----------S-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC------------------CEEEECSCSS
T ss_pred -----------E-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc------------------ceeeecCCCC
Confidence 1 256778899999887 77777777888887654 2110 0334556889
Q ss_pred CeEEEEEec-CCCcEEEEEeCCCcEEEEeCCCC------ceeEEecCCCC--------CCeeEEEEeecCCCCCcEEEEE
Q 039790 378 EITELSMCQ-WLTTRLASASLDGTVKIWDDRKS------TPLAVLRPYDG--------HPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 378 ~V~slafsp-dg~~~LaSgs~Dg~IrIWDl~sg------~~l~tl~~h~~--------~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
.|.+++|+| ++ .+|++|+.||.|+|||++.+ ..+..+.+|.. ..|++++|+ |++++|+++
T Consensus 195 ~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~ 269 (342)
T 1yfq_A 195 QIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS----PRHKFLYTA 269 (342)
T ss_dssp CEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC----TTTCCEEEE
T ss_pred ceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc----CCCCEEEEe
Confidence 999999999 88 89999999999999999887 88889988742 289999999 999999997
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc-CcccccccccccceEEEEeCCCCEEEEEeCCCe-EEEEE
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK-SSAELRLEDAFFNQVVALNRAGLFLLANAKKNA-IYAIH 516 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h-~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~-I~iWd 516 (1395)
+ .||.|++||+.++ +++.++..| ...+.. ++ ++|.+|++++.||. .+.|.
T Consensus 270 ~-~dg~i~vwd~~~~------------~~~~~~~~~h~~~v~~---------~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 270 G-SDGIISCWNLQTR------------KKIKNFAKFNEDSVVK---------IA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp E-TTSCEEEEETTTT------------EEEEECCCCSSSEEEE---------EE--ECSSEEEEEEECTHHHHCSS
T ss_pred c-CCceEEEEcCccH------------hHhhhhhcccCCCceE---------ec--CCCCeEEEEecCCccccccc
Confidence 7 9999999999988 888888887 655432 44 99999999999998 55444
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.2e-27 Score=283.52 Aligned_cols=288 Identities=14% Similarity=0.151 Sum_probs=210.0
Q ss_pred ccCCC-CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCE
Q 039790 152 PTLPP-PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNY 230 (1395)
Q Consensus 152 ~s~p~-p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~ 230 (1395)
+.+.+ .+..|++++.||+|++|++... ..+. .......+ +|...|.+++|++++++
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~-----------------~~~~-----~~~~~~~~-~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEI-----------------IVGE-----VYSSSLTY-DCSSTVTQITMIPNFDA 125 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHH-----------------HTTC-----CCSCSEEE-ECSSCEEEEEECTTSSE
T ss_pred EEECCCCCCEEEEecCCceEEEeECccc-----------------ccCc-----ccceeeec-cCCCCEEEEEEeCCCCE
Confidence 56666 7789999999999999994310 0000 01122333 48999999999999999
Q ss_pred EEEEEcCCeEEEEECC---CC-ceEEec----------c--CCCCeEEEEEe-eCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 231 ICYGLKLGNIRILNII---TA-LRSLLR----------G--HTQRVTDMAFF-AEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~---~~-~~~~l~----------~--H~~~V~slaf~-s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
|++|+.||.|+|||+. .+ ....+. . +...+.++.|. ++++.+|++|+.||+|++||+++++
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-- 203 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-- 203 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC--
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--
Confidence 9999999999999995 33 222221 2 56677777742 5789999999999999999999877
Q ss_pred CCCcccccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 294 EDKPQILGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.+..+.. |...+++++|+|++..+++++.++.+.+|+... +. .+..
T Consensus 204 ------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~-------------------~~~~ 251 (437)
T 3gre_A 204 ------------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NV-------------------LIRS 251 (437)
T ss_dssp ------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TE-------------------EEEE
T ss_pred ------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-cc-------------------EEEE
Confidence 3444444 678999999999998888888888888887643 11 1344
Q ss_pred Ec-ccCCCeEEEEEec----CCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-------------------------C
Q 039790 372 VG-KHDGEITELSMCQ----WLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-------------------------H 421 (1395)
Q Consensus 372 l~-~h~~~V~slafsp----dg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-------------------------~ 421 (1395)
+. .|...|++++|+| ++ .+|++|+.||+|+|||+++++++..+.+|.. .
T Consensus 252 ~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLN 330 (437)
T ss_dssp EBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGG
T ss_pred EecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCC
Confidence 43 6788999997665 45 7999999999999999999999998886532 1
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc------------------
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL------------------ 483 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~------------------ 483 (1395)
.|++++|+ ++.+|++++ .|+.|++||+.++ +++..+.+|.....
T Consensus 331 ~v~~l~~~-----~~~~l~s~~-~d~~i~~wd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (437)
T 3gre_A 331 ALSTISVS-----NDKILLTDE-ATSSIVMFSLNEL------------SSSKAVISPSRFSDVFIPTQVTANLTMLLRKM 392 (437)
T ss_dssp GGCCEEEE-----TTEEEEEEG-GGTEEEEEETTCG------------GGCEEEECC--CCCEEEEEEEETTEEEEEEEC
T ss_pred ceEEEEEC-----CceEEEecC-CCCeEEEEECCCc------------ccceEEecccccCceEEEEEeecceEEEEEec
Confidence 57788886 557888866 9999999999988 44444444210000
Q ss_pred -----------cccccccceEEEEeCC--CCEEEEEeCCCeEEEEE
Q 039790 484 -----------RLEDAFFNQVVALNRA--GLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 484 -----------~~~~~~~~~~l~~S~d--g~~LaSgs~Dg~I~iWd 516 (1395)
..+.. .+..+.|.++ +.+|++|+.||.|+||+
T Consensus 393 ~~~~~~~~~~~~~h~~-~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 393 KRTSTHSVDDSLYHHD-IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C-------------CC-CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccccCccccccc-ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 00111 1234677776 88999999999999994
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=2.9e-26 Score=276.05 Aligned_cols=292 Identities=19% Similarity=0.237 Sum_probs=218.1
Q ss_pred EEEEEecCCCEE-EEEEcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCC
Q 039790 220 LGRQIAVNRNYI-CYGLKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 220 ~~va~Spdg~~L-asGs~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
..++++++...+ ++|+.||.|+|||+... ....+.+|.+.|++++| ++ ++.+|++|+.||+|+|||+.++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAW-CPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEE-CTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEe-CCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 356778776544 45788999999999663 35568899999999999 77 899999999999999999998752
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCC-eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQ-EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~-~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.... ...+..+..|...+.+++|+|++. .+++++.++.+.+|+... +. ....
T Consensus 117 ~~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~-------------------~~~~ 169 (402)
T 2aq5_A 117 VLPL-------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GA-------------------AVLT 169 (402)
T ss_dssp SSCB-------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TE-------------------EEEE
T ss_pred cccc-------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CC-------------------ccEE
Confidence 2110 012345567889999999999985 555555566677776543 21 1455
Q ss_pred E--cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEe--cCC
Q 039790 372 V--GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGG--PLN 446 (1395)
Q Consensus 372 l--~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~G--s~D 446 (1395)
+ .+|.+.|++++|+|++ .+|++++.||.|++||+++++++..+ .+|.+..+.++.|+ |++.+|+++. +.|
T Consensus 170 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV----SEGKILTTGFSRMSE 244 (402)
T ss_dssp ECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC----STTEEEEEEECTTCC
T ss_pred EecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc----CCCcEEEEeccCCCC
Confidence 6 6899999999999998 89999999999999999999999999 78987459999999 9999888862 489
Q ss_pred CeEEEEECCCCCCCCCCCCcccccE-EEEEec-cCcccccccccccceEEEEeCCCCEEE-EEeCCCeEEEEEcCCCCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKC-TQTLEL-KSSAELRLEDAFFNQVVALNRAGLFLL-ANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~-l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~~La-Sgs~Dg~I~iWdl~~g~~~ 523 (1395)
+.|+|||++++ .. +..+.. +...+ ..++|+++|.+|+ +|+.|+.|++|++..+.
T Consensus 245 ~~i~iwd~~~~------------~~~~~~~~~~~~~~v---------~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~-- 301 (402)
T 2aq5_A 245 RQVALWDTKHL------------EEPLSLQELDTSSGV---------LLPFFDPDTNIVYLCGKGDSSIRYFEITSEA-- 301 (402)
T ss_dssp EEEEEEETTBC------------SSCSEEEECCCCSSC---------EEEEEETTTTEEEEEETTCSCEEEEEECSST--
T ss_pred ceEEEEcCccc------------cCCceEEeccCCCce---------eEEEEcCCCCEEEEEEcCCCeEEEEEecCCC--
Confidence 99999999886 22 222322 22222 3589999999886 55579999999998753
Q ss_pred CCcceeeeeeeeccccEEEEecCCC-CcCcCCCCeEEEEEcCCCcee
Q 039790 524 ASTRMDYIAEFTVTMPILSLTGTTT-DASPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~~~ils~~~~~~-d~~~s~dg~V~lWdv~t~~i~ 569 (1395)
..+..+..+....++..+..... ..+.++++.+++|++.++.+.
T Consensus 302 --~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 302 --PFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERKCE 346 (402)
T ss_dssp --TCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETTEEE
T ss_pred --cceEeecccccCCcccceEEecccccceecceeEEEEEcCCCcEE
Confidence 23556666654444444444331 223567789999999988654
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.7e-26 Score=278.77 Aligned_cols=296 Identities=12% Similarity=0.122 Sum_probs=214.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCC------------CCE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP------------GLV 219 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~------------~~V 219 (1395)
+.+.+.+..|++++.||.|++|++... +... .....+...+..+.+|. +.|
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~--~~~~---------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQE--NKIQ---------------SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC----------------------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCC--CCCC---------------cccccceeEecccccccccccccccccccCce
Confidence 566777889999999999999994421 1000 00001223456777887 889
Q ss_pred EEEEEecCC--CEEEEEEcCCeEEEEECCCCce-----------------------------------------EEeccC
Q 039790 220 LGRQIAVNR--NYICYGLKLGNIRILNIITALR-----------------------------------------SLLRGH 256 (1395)
Q Consensus 220 ~~va~Spdg--~~LasGs~DG~IrIWd~~~~~~-----------------------------------------~~l~~H 256 (1395)
.+++|++++ .+|++|+.||.|+|||+.++.. ..+.+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 8999999999999999976422 224689
Q ss_pred CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE-------EecCCCCCccEEEEeCCC-Ce
Q 039790 257 TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ-------ILADGDSVHPRVCWHPHK-QE 328 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~-------~~~~~~~~v~~v~~sp~~-~~ 328 (1395)
...|++++| ++++++|++| .||+|+|||+..+. ..+. .+..|...+.+++|+|++ ..
T Consensus 177 ~~~v~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 241 (447)
T 3dw8_B 177 TYHINSISI-NSDYETYLSA-DDLRINLWHLEITD-------------RSFNIVDIKPANMEELTEVITAAEFHPNSCNT 241 (447)
T ss_dssp SSCCCEEEE-CTTSSEEEEE-CSSEEEEEETTEEE-------------EEEEEEECCCSSGGGCCCCEEEEEECSSCTTE
T ss_pred CcceEEEEE-cCCCCEEEEe-CCCeEEEEECCCCC-------------ceeeeeecccccccccCcceEEEEECCCCCcE
Confidence 999999999 8899999998 79999999998432 1222 244678889999999998 66
Q ss_pred EEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC------------CeEEEEEecCCCcEEEEEe
Q 039790 329 ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG------------EITELSMCQWLTTRLASAS 396 (1395)
Q Consensus 329 lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~------------~V~slafspdg~~~LaSgs 396 (1395)
+++++.++.+.+|+....... ......+.+|.. .|++++|+|+| .+|++++
T Consensus 242 l~s~~~dg~i~iwd~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~ 304 (447)
T 3dw8_B 242 FVYSSSKGTIRLCDMRASALC----------------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRD 304 (447)
T ss_dssp EEEEETTSCEEEEETTTCSSS----------------CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEE
T ss_pred EEEEeCCCeEEEEECcCCccc----------------cceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEee
Confidence 666666777777776442210 011345555654 99999999998 8999999
Q ss_pred CCCcEEEEeCCC-CceeEEecCCCCCC---------------eeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCC
Q 039790 397 LDGTVKIWDDRK-STPLAVLRPYDGHP---------------VNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGW 460 (1395)
Q Consensus 397 ~Dg~IrIWDl~s-g~~l~tl~~h~~~~---------------V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~ 460 (1395)
. |.|+|||++. ++++.++.+|.. . +..++|+ |++.+|++++ .||.|+|||+.++
T Consensus 305 ~-~~v~iwd~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~~~s----~~~~~l~s~s-~dg~v~iwd~~~~--- 374 (447)
T 3dw8_B 305 Y-LSVKVWDLNMENRPVETYQVHEY-LRSKLCSLYENDCIFDKFECCWN----GSDSVVMTGS-YNNFFRMFDRNTK--- 374 (447)
T ss_dssp S-SEEEEEETTCCSSCSCCEESCGG-GTTTHHHHHHTSGGGCCCCEEEC----TTSSEEEEEC-STTEEEEEETTTC---
T ss_pred C-CeEEEEeCCCCccccceeecccc-ccccccccccccccccceEEEEC----CCCCEEEEec-cCCEEEEEEcCCC---
Confidence 8 9999999997 899999998863 1 2349999 9999998866 9999999999987
Q ss_pred CCCCCcccccEEEEEeccCcccc------------------------cccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 461 LLPSDIESWKCTQTLELKSSAEL------------------------RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 461 ~~~~~~~~~~~l~tl~~h~~~i~------------------------~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
+++ .+..+..... .....--...++|+|+|.+|++++.++ +++|.
T Consensus 375 ---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 375 ---------RDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp ---------CEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred ---------cce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 333 2332221000 000011123699999999999998776 88887
Q ss_pred c
Q 039790 517 M 517 (1395)
Q Consensus 517 l 517 (1395)
-
T Consensus 444 ~ 444 (447)
T 3dw8_B 444 D 444 (447)
T ss_dssp C
T ss_pred c
Confidence 4
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=2.4e-26 Score=266.77 Aligned_cols=267 Identities=13% Similarity=0.135 Sum_probs=204.0
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NRN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg~ 229 (1395)
+.+.+.+..|++++.||.|++|++.... .....+..+.+|...|.+++|++ |++
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------------~~~~~~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDT------------------------SNWELSDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSS------------------------CCEEEEEEEECCSSCEEEEEECCGGGCS
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCC------------------------CcceecceeccCCCcEEEEEEcCCCCCC
Confidence 5566677888888888888888843110 01134567788999999999999 699
Q ss_pred EEEEEEcCCeEEEEECCCC----------ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 230 YICYGLKLGNIRILNIITA----------LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~----------~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
+|++|+.||.|+|||+.++ ....+.+|.+.|.+++| +++ +.+|++|+.||.|++||+.++.....+.
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF-APAHLGLKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEE-CCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEE-cCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence 9999999999999999875 26678899999999999 788 9999999999999999999887543321
Q ss_pred ccccceEEEEE-EecCCCCCccEEEEeCC---CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 298 QILGKIVVAIQ-ILADGDSVHPRVCWHPH---KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 298 ~~~~~~i~~l~-~~~~~~~~v~~v~~sp~---~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
... .+..+. ....+...+.++.|+|+ +. +++++..+..++||....+.. ..+..+.
T Consensus 152 ~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 211 (351)
T 3f3f_A 152 LTS--EMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKL-----------------HVAAKLP 211 (351)
T ss_dssp EEE--EEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCE-----------------EEEEECC
T ss_pred ccc--cccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCce-----------------eeeeecC
Confidence 100 000000 11246677889999997 55 555555555556665443221 1145677
Q ss_pred ccCCCeEEEEEecCCC---cEEEEEeCCCcEEEEeCCCC-----------------------------------------
Q 039790 374 KHDGEITELSMCQWLT---TRLASASLDGTVKIWDDRKS----------------------------------------- 409 (1395)
Q Consensus 374 ~h~~~V~slafspdg~---~~LaSgs~Dg~IrIWDl~sg----------------------------------------- 409 (1395)
+|...|++++|+|+++ .+|++|+.||.|++||++.+
T Consensus 212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 8999999999999973 69999999999999999875
Q ss_pred -----ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc
Q 039790 410 -----TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478 (1395)
Q Consensus 410 -----~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h 478 (1395)
.++..+.+|.+ .|++++|+ |++++|++++ .||.|+|||+.++ ..++|+..+..|
T Consensus 292 ~~~~~~~~~~~~~h~~-~v~~~~~s----~~~~~l~s~~-~dg~v~iw~~~~~---------~~~~~~~~~~~~ 350 (351)
T 3f3f_A 292 SNLQVELLSEHDDHNG-EVWSVSWN----LTGTILSSAG-DDGKVRLWKATYS---------NEFKCMSVITAQ 350 (351)
T ss_dssp CSEEEEEEEEECTTSS-CEEEEEEC----SSSCCEEEEE-TTSCEEEEEECTT---------SCEEEEEEEC--
T ss_pred ccccccEEEEEecccc-cEEEEEEc----CCCCEEEEec-CCCcEEEEecCcC---------cchhheeehccc
Confidence 67788899987 99999999 9999999977 9999999999987 556777766543
No 101
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=2.5e-26 Score=280.02 Aligned_cols=270 Identities=18% Similarity=0.231 Sum_probs=210.0
Q ss_pred eeeeCCCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCC-----------CceEEeccCCCCeEEEEEeeCCCC-EEEEE
Q 039790 210 TKYISDPGLVLGRQIAVN-RNYICYGLKLGNIRILNIIT-----------ALRSLLRGHTQRVTDMAFFAEDVH-LLASA 276 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~-----------~~~~~l~~H~~~V~slaf~s~dg~-~LaSg 276 (1395)
.....|.+.|++++|+++ +++|++|+.||.|+|||+.. .....+.+|...|++|+| ++++. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEE-CTTSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEe-CCCCCCeEEEE
Confidence 445679999999999997 78999999999999999986 246788899999999999 77777 99999
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.||+|++||+..+.. ....+.....+..|...+.+++|+|++..+|+++ .++.+.+|+......
T Consensus 201 ~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------- 266 (430)
T 2xyi_A 201 SDDHTICLWDINATPK-------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------- 266 (430)
T ss_dssp CTTSCEEEEETTSCCB-------GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-------
T ss_pred eCCCeEEEEeCCCCCC-------CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-------
Confidence 9999999999998541 1122233455667888999999999665555555 566666666543211
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCC
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
...+..+..|...|++++|+|++..+|++|+.||+|+|||+++ +.++..+.+|.+ .|++|+|+ |
T Consensus 267 ----------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~s----p 331 (430)
T 2xyi_A 267 ----------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWS----P 331 (430)
T ss_dssp ----------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-CEEEEEEC----S
T ss_pred ----------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEEC----C
Confidence 0114556689999999999999866899999999999999998 578999999987 99999999 8
Q ss_pred CCcE-EEEEecCCCeEEEEECCCCCCCCCCC--CcccccEEEEEeccCcccccccccccceEEEEeCCCC-EEEEEeCCC
Q 039790 435 QHIV-LITGGPLNRELKIWASAEEEGWLLPS--DIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL-FLLANAKKN 510 (1395)
Q Consensus 435 dg~~-L~s~Gs~Dg~I~IWDl~tg~~~~~~~--~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~-~LaSgs~Dg 510 (1395)
+++. |++++ .|+.|+|||+.......... ......++..+.+|...+. .+.|++++. +|++++.||
T Consensus 332 ~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 332 HNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS---------DFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp SCTTEEEEEE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE---------EEEECSSSTTEEEEEETTS
T ss_pred CCCCEEEEEe-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCce---------EEEECCCCCCEEEEEECCC
Confidence 8865 55655 99999999998731100000 0011256677777766553 489999999 999999999
Q ss_pred eEEEEEcCC
Q 039790 511 AIYAIHMDY 519 (1395)
Q Consensus 511 ~I~iWdl~~ 519 (1395)
.|+||++..
T Consensus 402 ~i~iw~~~~ 410 (430)
T 2xyi_A 402 IMQVWQMAE 410 (430)
T ss_dssp EEEEEEECH
T ss_pred CEEEeEccc
Confidence 999999875
No 102
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=5.8e-27 Score=273.42 Aligned_cols=256 Identities=18% Similarity=0.205 Sum_probs=197.1
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--CCC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV--NRN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp--dg~ 229 (1395)
+.+.+++..|++++.|++|++||+.. + ....+..+.+|.+.|++++|++ +++
T Consensus 19 v~~s~~g~~lasgs~D~~v~lwd~~~--------------------~------~~~~~~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSDRSVKIFDVRN--------------------G------GQILIADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp EEECGGGCEEEEEETTTEEEEEEEET--------------------T------EEEEEEEEECCSSCEEEEEECCGGGSS
T ss_pred eeEcCCCCEEEEEeCCCeEEEEEecC--------------------C------CcEEEEEEcCCCccEEEEEeCCCCCCC
Confidence 56677788999999999999999431 0 0123567889999999999986 489
Q ss_pred EEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 230 YICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
+|++|+.||+|+|||+.++ ....+.+|...|.+++| +++ +.+|++|+.||+|++||+..+.. .
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~-~p~~~g~~lasgs~D~~i~lwd~~~~~~-----------~ 140 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCW-APHDYGLILACGSSDGAISLLTYTGEGQ-----------W 140 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEE-CCTTTCSCEEEECSSSCEEEEEECSSSC-----------E
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEE-CCCCCCcEEEEEcCCCCEEEEecCCCCC-----------c
Confidence 9999999999999999986 35678899999999999 666 78999999999999999987531 1
Q ss_pred EEEEEecCCCCCccEEEEeCCC-----------------CeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 305 VAIQILADGDSVHPRVCWHPHK-----------------QEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~-----------------~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
........|...+.+++|+|+. ..+++++.++.+.+|+....... .
T Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-----------------~ 203 (316)
T 3bg1_A 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-----------------K 203 (316)
T ss_dssp EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-----------------E
T ss_pred ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-----------------c
Confidence 1123345677788899999873 45555555666777765322110 1
Q ss_pred ceEEEcccCCCeEEEEEecCC---CcEEEEEeCCCcEEEEeCCCC---c-eeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 368 GVQLVGKHDGEITELSMCQWL---TTRLASASLDGTVKIWDDRKS---T-PLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg---~~~LaSgs~Dg~IrIWDl~sg---~-~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
....+.+|.+.|++++|+|++ ..+|++|+.||+|+|||+.+. . ....+..|.+ .|++++|+ |+|.+|+
T Consensus 204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~s----p~g~~la 278 (316)
T 3bg1_A 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWS----ITANILA 278 (316)
T ss_dssp EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEEC----TTTCCEE
T ss_pred eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEc----CCCCEEE
Confidence 145567899999999999985 368999999999999998763 1 2344567776 99999999 9999999
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
+++ .|++|+||+.... ..|.|+..+..
T Consensus 279 s~~-~D~~v~lw~~~~~---------g~~~~~~~~~~ 305 (316)
T 3bg1_A 279 VSG-GDNKVTLWKESVD---------GQWVCISDVNK 305 (316)
T ss_dssp EEE-SSSCEEEEEECTT---------SCEEEEEECC-
T ss_pred EEc-CCCeEEEEEECCC---------CcEEEeeeccC
Confidence 977 9999999998654 44667766653
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=4.3e-26 Score=267.94 Aligned_cols=281 Identities=13% Similarity=0.082 Sum_probs=214.7
Q ss_pred ccCCCC---CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCC
Q 039790 152 PTLPPP---SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNR 228 (1395)
Q Consensus 152 ~s~p~p---~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg 228 (1395)
+.+.+. +..|++++.||.|++|++.. . + ......+.+|.+.|.+++|++++
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~-~------------------~-------~~~~~~~~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQD-S------------------G-------QTIPKAQQMHTGPVLDVCWSDDG 98 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECT-T------------------S-------CEEEEEEEECSSCEEEEEECTTS
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCC-C------------------C-------ceeEEEeccccCCEEEEEECcCC
Confidence 444555 46788888888888888331 0 0 02225677899999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEe-eCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 229 NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFF-AEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~-s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
++|++|+.||.|+|||+.++....+.+|...|++++|+ ++++.+|++|+.||.|++||+.+++..
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------------- 164 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM-------------- 164 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS--------------
T ss_pred CEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE--------------
Confidence 99999999999999999999877788999999999995 578889999999999999999987622
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
..+..+ ..+.++.+ ....+++++.++.+.+|+........ ......+...+.++++.++
T Consensus 165 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 165 MVLQLP-ERCYCADV--IYPMAVVATAERGLIVYQLENQPSEF------------------RRIESPLKHQHRCVAIFKD 223 (368)
T ss_dssp EEEECS-SCEEEEEE--ETTEEEEEEGGGCEEEEECSSSCEEE------------------EECCCSCSSCEEEEEEEEC
T ss_pred EEEecC-CCceEEEe--cCCeeEEEeCCCcEEEEEeccccchh------------------hhccccccCCCceEEEccc
Confidence 122222 23333444 45578888888888888875432210 1111234456677777665
Q ss_pred CC---cEEEEEeCCCcEEEEeCCCC---ceeEEecCCCCC-----------CeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 388 LT---TRLASASLDGTVKIWDDRKS---TPLAVLRPYDGH-----------PVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 388 g~---~~LaSgs~Dg~IrIWDl~sg---~~l~tl~~h~~~-----------~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
.. ..+++|+.||.|++||++.. ..+..+.+|... .|++++|+ |++++|++++ .||.|+
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~s~~-~dg~i~ 298 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH----PVHGTLATVG-SDGRFS 298 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC----TTTCCEEEEE-TTSCEE
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe----cCCCEEEEEc-cCCeEE
Confidence 41 23999999999999999987 678888888642 59999999 9999999977 999999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|||+.++ +++..+..|...+. .++|+++|.+|++++.|+..+.|++-.
T Consensus 299 iwd~~~~------------~~~~~~~~~~~~v~---------~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 299 FWDKDAR------------TKLKTSEQLDQPIS---------ACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEETTTT------------EEEEECCCCSSCEE---------EEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEECCCC------------cEEEEecCCCCCce---------EEEECCCCCeEEEEecccccccccccC
Confidence 9999988 89999988876654 499999999999999988666665543
No 104
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-26 Score=300.22 Aligned_cols=257 Identities=19% Similarity=0.219 Sum_probs=206.0
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFI 284 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~I 284 (1395)
..+.+|.+.|++++|+++|++|++|+.||.|+|||+.++ ....+.+|.+.|++++| +++ +++|++|+.||+|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~-s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW-AHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEE-CCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEe-cCCCCCCEEEEEeCCCeEEE
Confidence 467899999999999999999999999999999999854 46688999999999999 666 899999999999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC--CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH--KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~--~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
||+.++. ...+.....|...+.+++|+|+ +..+++++.++.+.+|+.......
T Consensus 82 wd~~~~~------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~------------- 136 (753)
T 3jro_A 82 WKEENGR------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT------------- 136 (753)
T ss_dssp EEEETTE------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-------------
T ss_pred EECCCCc------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-------------
Confidence 9998764 2245566778899999999999 777777777788888876543211
Q ss_pred cccccceEEEcccCCCeEEEEEecC-------------CCcEEEEEeCCCcEEEEeCCCC----ceeEEecCCCCCCeeE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQW-------------LTTRLASASLDGTVKIWDDRKS----TPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspd-------------g~~~LaSgs~Dg~IrIWDl~sg----~~l~tl~~h~~~~V~s 425 (1395)
....+.+|...|++++|+|. + .+|++|+.||+|++||++++ .++..+.+|.+ .|++
T Consensus 137 -----~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~ 209 (753)
T 3jro_A 137 -----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRD 209 (753)
T ss_dssp -----CCEEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEE
T ss_pred -----ceeEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCC-cEEE
Confidence 13456789999999999994 5 89999999999999999887 56778899997 9999
Q ss_pred EEEeecCCCC---CcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCE
Q 039790 426 VTFLIGPHPQ---HIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLF 502 (1395)
Q Consensus 426 V~fs~~~~pd---g~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~ 502 (1395)
++|+ |+ +.+|++++ .||.|+|||+.+++... ...+.....|...+ ..++|+++|.+
T Consensus 210 l~~s----p~~~~~~~l~s~s-~Dg~I~iwd~~~~~~~~-------~~~~~~~~~~~~~v---------~~l~~spdg~~ 268 (753)
T 3jro_A 210 VAWS----PTVLLRSYLASVS-QDRTCIIWTQDNEQGPW-------KKTLLKEEKFPDVL---------WRASWSLSGNV 268 (753)
T ss_dssp EEEC----CCCSSSEEEEEEE-SSSCEEEEEESSSSSCC-------BCCBSSSSCCSSCC---------CCEEECTTTCC
T ss_pred EEec----cCCCCCCEEEEEe-cCCEEEEecCCCCCCcc-------eeEEeccCCCCCce---------EEEEEcCCCCE
Confidence 9999 88 88999877 99999999998862100 00111112233332 34899999999
Q ss_pred EEEEeCCCeEEEEEcCCC
Q 039790 503 LLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 503 LaSgs~Dg~I~iWdl~~g 520 (1395)
|++++.||.|++|++..+
T Consensus 269 l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 269 LALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEECSSSCEECCBCCSS
T ss_pred EEEEcCCCEEEEEecCCC
Confidence 999999999999999864
No 105
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=1.1e-24 Score=251.49 Aligned_cols=273 Identities=14% Similarity=0.214 Sum_probs=195.0
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eE--EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RS--LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~--~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
++.+++||+++ +||+|. |++|+|||+.++. +. .+.+|...|++|+| ++++++|++|+.||+|+|||+.+++
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~-~~~~~~l~sgs~Dg~v~iw~~~~~~--- 100 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQK--- 100 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEE-CTTSSEEEEEETTSEEEEEETTTTE---
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEE-CCCCCEEEEEECCCcEEEeecCCce---
Confidence 45778999886 788765 8999999999984 33 34578889999999 9999999999999999999999887
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
.+..+..|...+.++. .++..+++++.++.+..|+...... .+..+.+
T Consensus 101 -----------~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 148 (318)
T 4ggc_A 101 -----------RLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEH-------------------HVATLSG 148 (318)
T ss_dssp -----------EEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSC-------------------EEEEEEC
T ss_pred -----------eEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCce-------------------eEEEEcC
Confidence 4555566666655444 4454444444455555554432211 1566788
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCCeeEEEEeecCCCCCcEEE--EEecCCCe
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST----PLAVLRPYDGHPVNCVTFLIGPHPQHIVLI--TGGPLNRE 448 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~----~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~--s~Gs~Dg~ 448 (1395)
|...+.++.|++++ .+|++++.||+|++||+++++ .+.....|.+ .|.++.|+ +++..++ .+|+.+++
T Consensus 149 ~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~----~~~~~~~~~~~~~~~~~ 222 (318)
T 4ggc_A 149 HSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWC----PWQSNVLATGGGTSDRH 222 (318)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS-CEEEEEEC----TTSTTEEEEEECTTTCE
T ss_pred ccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCC-ceEEEEec----CCCCcEEEEEecCCCCE
Confidence 99999999999998 899999999999999999875 3456667776 89999998 6665433 34668999
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcCCCCCCCCc
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMDYGPNPAST 526 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~~g~~~~~~ 526 (1395)
|+|||.... ........+.. + ..+.|++++..+++++ .|+.|++||+.+++
T Consensus 223 i~lwd~~~~------------~~~~~~~~~~~-v---------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~----- 275 (318)
T 4ggc_A 223 IRIWNVCSG------------ACLSAVDAHSQ-V---------CSILWSPHYKELISGHGFAQNQLVIWKYPTMA----- 275 (318)
T ss_dssp EEEEETTTC------------CEEEEEECSSC-E---------EEEEEETTTTEEEEEECTTTCCEEEEETTTCC-----
T ss_pred EEEEecccc------------cccccccceee-e---------eeeeecccccceEEEEEcCCCEEEEEECCCCc-----
Confidence 999999887 55555443332 2 2478888888877654 79999999998754
Q ss_pred ceeeeeeeecc-ccEEEEecCCCCc--C--cCCCCeEEEEEcCC
Q 039790 527 RMDYIAEFTVT-MPILSLTGTTTDA--S--PDGEHIVQIYCVQT 565 (1395)
Q Consensus 527 ~~~~i~~f~~~-~~ils~~~~~~d~--~--~s~dg~V~lWdv~t 565 (1395)
.+..+.+| ..+.++.... +. + ++.|++|+||++..
T Consensus 276 ---~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 276 ---KVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp ---EEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCSC
T ss_pred ---EEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECCC
Confidence 23334333 2344433332 21 1 24566666666643
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=9.3e-26 Score=269.11 Aligned_cols=208 Identities=11% Similarity=0.051 Sum_probs=165.5
Q ss_pred eCCCCCEEEEEEecCCCEEEEEE--cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 213 ISDPGLVLGRQIAVNRNYICYGL--KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~LasGs--~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
..+...+.+++|||||++|++|+ .|++|+|||+.++.......|.+.|++|+| +++|.+|++++.| .+++|+..++
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~f-spdg~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHF-STDGKVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEE-CTTSSEEEEECSS-CEEEEETTTC
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEE-ccCCceEEeccce-eEEEEEeccC
Confidence 34567899999999999987654 789999999999864444458889999999 9999999999855 5777777766
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC----eEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN----RILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
.. ........+...+.+++|+|++..+++++.++ .+..|+...... ..
T Consensus 208 ~~------------~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~----------------~~ 259 (365)
T 4h5i_A 208 SC------------IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT----------------SV 259 (365)
T ss_dssp CE------------EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE----------------EE
T ss_pred cc------------eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee----------------cc
Confidence 51 11233445677889999999999888887765 344444322110 01
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.....+.+|...|++++|+|+| ++||+|+.|++|+|||+++++++.++ .+|.+ .|++|+|+ |||++|++++ .
T Consensus 260 ~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~-~V~~v~fS----pdg~~laS~S-~ 332 (365)
T 4h5i_A 260 LRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLSMSKIFKQAHSF-AITEVTIS----PDSTYVASVS-A 332 (365)
T ss_dssp EEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEETTSSSS-CEEEEEEC----TTSCEEEEEE-T
T ss_pred eeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCcEEEEecCcccC-CEEEEEEC----CCCCEEEEEe-C
Confidence 1135667899999999999999 89999999999999999999999985 78998 99999999 9999999966 9
Q ss_pred CCeEEEEECCCC
Q 039790 446 NRELKIWASAEE 457 (1395)
Q Consensus 446 Dg~I~IWDl~tg 457 (1395)
|++|||||+...
T Consensus 333 D~tvrvw~ip~~ 344 (365)
T 4h5i_A 333 ANTIHIIKLPLN 344 (365)
T ss_dssp TSEEEEEECCTT
T ss_pred CCeEEEEEcCCC
Confidence 999999999654
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=3e-26 Score=276.02 Aligned_cols=319 Identities=10% Similarity=0.043 Sum_probs=187.1
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCee-ee--CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEE
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHL-IG--NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L-~G--~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs 235 (1395)
..|+..+.|+.|++|+.. +++... .+ ...++.+........+ ............|...+....+++++.+|++|+
T Consensus 31 ~~l~a~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~ 108 (393)
T 4gq1_A 31 SNLLAIGHDTGITIYCAS-EEQTPGSTGLTLQELFTIQTGLPTLHL-SFSSSCSYSENLHDGDGNVNSSPVYSLFLACVC 108 (393)
T ss_dssp TTEEEEEESSEEEEEEEE-ECCSSSCCSEEEEEEEEEECSSCEEEE-EECTTCEEECC----------CCEEEEEEEEEE
T ss_pred CCEEEEECCCCEEEEECC-CCCcccccccceeeeEEEecCCCeeeE-eecCCccccccccCCCcceeecCCCCCEEEEEe
Confidence 456666678899999843 222222 11 1223333221110000 001112223334555666667788899999999
Q ss_pred cCCeEEEEECCCCc------eEEeccCCCCeEEEEEeeC--------CCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 236 KLGNIRILNIITAL------RSLLRGHTQRVTDMAFFAE--------DVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~------~~~l~~H~~~V~slaf~s~--------dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
.|++|+|||..++. +..+.+|.+.|++|+| ++ ++++|+||+.|++|+|||+.++.
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~-~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~---------- 177 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDI-ADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG---------- 177 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEE-EEEECTTCSEEEEEEEEEETTSEEEEEEEETTE----------
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEE-ccccccccCCCCCEEEEEECCCeEEEEECCCCc----------
Confidence 99999999999873 2347899999999999 54 78999999999999999998765
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCC----ccC--ccccccceEEEccc
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPL----KCP--VDELINGVQLVGKH 375 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~----~~~--~~~~~~~~~~l~~h 375 (1395)
.+.....+...+.+++|+|++..+++++..++.+++|+...+........... .+. ............+|
T Consensus 178 ----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 253 (393)
T 4gq1_A 178 ----PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI 253 (393)
T ss_dssp ----EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred ----eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence 33344456678889999999876666666555444444333321100000000 000 00011112334579
Q ss_pred CCCeEEEEEe-cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecC---------------CCCCcEE
Q 039790 376 DGEITELSMC-QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP---------------HPQHIVL 439 (1395)
Q Consensus 376 ~~~V~slafs-pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~---------------~pdg~~L 439 (1395)
...|.++.|+ +++ .+|++++.|++|++||+..+.....+..|.. .+..+.|.+.. .+.+..+
T Consensus 254 ~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 254 ASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp SSSCSEEEEETTTT-CEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred cccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEccCCCCEE
Confidence 9999999998 666 8999999999999999998877777766654 44443333100 0234455
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+++|+.||+|+|||+.++ .++..+..|...+. .++|+|||++|++++.+| +.+|++.
T Consensus 332 ~~sgs~Dg~V~lwd~~~~------------~~~~~~~~~~~~V~---------svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEK------------DSNSIPIQLGMPIV---------DFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEETTTTEEEEEETTCT------------TCCEEEEECSSCEE---------EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEECCCCEEEEEECCCC------------cEEEEecCCCCcEE---------EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 566779999999999988 77777777776554 499999999999998766 6666653
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=4.2e-25 Score=257.99 Aligned_cols=266 Identities=9% Similarity=0.031 Sum_probs=203.8
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc----eEEeccCCCCeEEEEEeeCCCC-EEEEEECCCcEEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITAL----RSLLRGHTQRVTDMAFFAEDVH-LLASASVDGRFFIW 285 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~----~~~l~~H~~~V~slaf~s~dg~-~LaSgs~DgtV~IW 285 (1395)
...+|.+.|++++|++++++|++|+.||.|+|||+.++. ...+.+|...|.+++| ++++. +|++|+.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF-IDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEE-EESSSEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEE-CCCCCcEEEEEcCCCeEEEE
Confidence 345799999999999999999999999999999999876 6777799999999999 88899 99999999999999
Q ss_pred EC-CCCCCCCCCcccccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 NI-TEGPDEEDKPQILGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 dl-~tg~~~~~~~~~~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
|+ .++. ...+.. |...+.+++|++ +..+++++.++.+.+|+..........
T Consensus 85 d~~~~~~---------------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~---------- 138 (342)
T 1yfq_A 85 DLIGSPS---------------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA---------- 138 (342)
T ss_dssp CSSSSSS---------------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE----------
T ss_pred EeccCCc---------------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc----------
Confidence 99 8765 244556 888999999999 777777777777777765431100000
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cc--eeEEecCCCCCCeeEEEEeecCCC-CCcE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-ST--PLAVLRPYDGHPVNCVTFLIGPHP-QHIV 438 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~--~l~tl~~h~~~~V~sV~fs~~~~p-dg~~ 438 (1395)
.....+..+. |...|++++|++++ |++++.||.|++||+++ +. .......|.. .|.+++|+ | ++.+
T Consensus 139 -~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~----~~~~~~ 208 (342)
T 1yfq_A 139 -VKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALL----PKEQEG 208 (342)
T ss_dssp -EEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEEC----SGGGCE
T ss_pred -ccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCC-ceeEEEEC----CCCCCE
Confidence 0000012233 88899999999864 99999999999999998 54 3334556766 89999999 9 9999
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
|++++ .||.|+|||+.... +....+++..+..|...............++|+++|.+|++++.||.|++||+.
T Consensus 209 l~~~~-~dg~i~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 209 YACSS-IDGRVAVEFFDDQG------DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp EEEEE-TTSEEEEEECCTTC------CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EEEEe-cCCcEEEEEEcCCC------cccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 99977 89999999997640 001125566777775421111111233468999999999999999999999998
Q ss_pred CC
Q 039790 519 YG 520 (1395)
Q Consensus 519 ~g 520 (1395)
.+
T Consensus 282 ~~ 283 (342)
T 1yfq_A 282 TR 283 (342)
T ss_dssp TT
T ss_pred cH
Confidence 75
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-24 Score=257.09 Aligned_cols=245 Identities=16% Similarity=0.147 Sum_probs=196.8
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC--CC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN--RN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd--g~ 229 (1395)
+.+.+.+..|++++.||.|++|++.. .....+..+.+|.+.|++++|+++ ++
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~--------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEG--------------------------ETHKLIDTLTGHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEET--------------------------TEEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCC--------------------------CcceeeeEecCCCCcEEEEEeCCCCCCC
Confidence 55666778888888888898888321 012445677889999999999987 99
Q ss_pred EEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 230 YICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
+|++|+.||.|+|||+.++ ....+.+|...|.+++| +++ +.+|++++.||.|++||+..+...
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----------- 138 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW-APHEYGPLLLVASSDGKVSVVEFKENGTT----------- 138 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CCGGGCSEEEEEETTSEEEEEECCTTSCC-----------
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEe-CCCCCCCEEEEecCCCcEEEEecCCCCce-----------
Confidence 9999999999999999988 56778889999999999 777 899999999999999999987421
Q ss_pred EEEEEecCCCCCccEEEEeC-------------CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 305 VAIQILADGDSVHPRVCWHP-------------HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp-------------~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.......+...+.+++|+| ++..+++++.++.+.+|+....... ......
T Consensus 139 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------~~~~~~ 201 (379)
T 3jrp_A 139 -SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------------YVLEST 201 (379)
T ss_dssp -CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE----------------EEEEEE
T ss_pred -eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc----------------eeeEEE
Confidence 1223456788899999999 5777777777888888876432211 111456
Q ss_pred EcccCCCeEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCc---eeEEec--CCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 372 VGKHDGEITELSMCQWL--TTRLASASLDGTVKIWDDRKST---PLAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 372 l~~h~~~V~slafspdg--~~~LaSgs~Dg~IrIWDl~sg~---~l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+.+|...|++++|+|++ +.+|++++.||.|+|||++++. ....+. .|.. .|++++|+ |+|.+|++++
T Consensus 202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s----~~g~~l~~~~- 275 (379)
T 3jrp_A 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWS----LSGNVLALSG- 275 (379)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEEC----SSSCCEEEEE-
T ss_pred EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEc----CCCCEEEEec-
Confidence 77899999999999993 3899999999999999999874 222232 3666 89999999 9999999977
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.||.|+|||+..+
T Consensus 276 ~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 276 GDNKVTLWKENLE 288 (379)
T ss_dssp SSSSEEEEEEEET
T ss_pred CCCcEEEEeCCCC
Confidence 8999999999866
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-24 Score=262.92 Aligned_cols=275 Identities=11% Similarity=0.054 Sum_probs=205.1
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc----eEEec--------------------------------------
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITAL----RSLLR-------------------------------------- 254 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~----~~~l~-------------------------------------- 254 (1395)
..+.+++|+++|++|+++ .++.|++||+.+|. +..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 467889999999977766 57899999998875 23333
Q ss_pred ----------------cCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECC--CCCCCCCCcccccceEEEEEEecCCCC
Q 039790 255 ----------------GHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNIT--EGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 255 ----------------~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~--tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
+|.+.|++++| ++++.+| ++|+.||+|+|||+. ++.+ +..+.. ..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-----------~~~~~~-~~~~~ 150 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRL-TSDESRLIACADSDKSLLVFDVDKTSKNV-----------LKLRKR-FCFSK 150 (450)
T ss_dssp ----------------CCCCCEEEEEE-CTTSSEEEEEEGGGTEEEEEEECSSSSSC-----------EEEEEE-EECSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEE-cCCCCEEEEEECCCCeEEEEECcCCCCce-----------eeeeec-ccCCC
Confidence 34447999999 8999996 899999999999998 6651 112211 24567
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC---CCcEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW---LTTRL 392 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd---g~~~L 392 (1395)
.+.+++|+|++..+++++.++.+..|+........ .....+.+|...|++++|+|+ + .+|
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~----------------~~~~~~~~h~~~v~~~~~sp~~~~~-~~l 213 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK----------------FTQEPILGHVSMLTDVHLIKDSDGH-QFI 213 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS----------------CCCCCSEECSSCEEEEEEEECTTSC-EEE
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc----------------ccceeeecccCceEEEEEcCCCCCC-cEE
Confidence 78999999999988888888888888764422110 012245579999999999999 7 899
Q ss_pred EEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE
Q 039790 393 ASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC 471 (1395)
Q Consensus 393 aSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~ 471 (1395)
++|+.|++|+|||++++.++.. +.+|.+ .|++++|+ ++.+|++++ .|++|+|||+.++ ++
T Consensus 214 ~s~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~s-----d~~~l~s~~-~d~~v~vwd~~~~------------~~ 274 (450)
T 2vdu_B 214 ITSDRDEHIKISHYPQCFIVDKWLFGHKH-FVSSICCG-----KDYLLLSAG-GDDKIFAWDWKTG------------KN 274 (450)
T ss_dssp EEEETTSCEEEEEESCTTCEEEECCCCSS-CEEEEEEC-----STTEEEEEE-SSSEEEEEETTTC------------CE
T ss_pred EEEcCCCcEEEEECCCCceeeeeecCCCC-ceEEEEEC-----CCCEEEEEe-CCCeEEEEECCCC------------cE
Confidence 9999999999999999998888 558987 99999994 788999977 9999999999988 88
Q ss_pred EEEEeccCcccc----------------cccccccceEEEEeCCCCEEEEEe-CCCeEEEEEc--CCCCCCCCcceeeee
Q 039790 472 TQTLELKSSAEL----------------RLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHM--DYGPNPASTRMDYIA 532 (1395)
Q Consensus 472 l~tl~~h~~~i~----------------~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl--~~g~~~~~~~~~~i~ 532 (1395)
+..+..+..... ..........++|++++.+|++++ .|+.|++|++ ..+ ..+..+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~-----~~l~~~~ 349 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK-----GDLALKQ 349 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST-----TCEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC-----Cceeecc
Confidence 888875431000 001123345789999999999998 8999999999 332 1233444
Q ss_pred eeeccccEEEEecC
Q 039790 533 EFTVTMPILSLTGT 546 (1395)
Q Consensus 533 ~f~~~~~ils~~~~ 546 (1395)
.+..+..+..+...
T Consensus 350 ~~~~~~~v~~~~~~ 363 (450)
T 2vdu_B 350 IITFPYNVISLSAH 363 (450)
T ss_dssp EEECSSCEEEEEEE
T ss_pred EeccCCceEEEEec
Confidence 44444445444443
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.5e-25 Score=270.03 Aligned_cols=311 Identities=8% Similarity=0.039 Sum_probs=219.0
Q ss_pred CcccCCCCCCeEEeecCCCCEEEEeCcCCCCCee-eeCceEEEEEeccCCCccC-ccc-ccceeeee-CCCCCEEEEEEe
Q 039790 150 PSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHL-IGNHSVYDIDVRLDGEVQP-QLE-VTPITKYI-SDPGLVLGRQIA 225 (1395)
Q Consensus 150 ~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L-~G~~~v~~v~~~~~G~~~~-~~~-~~~i~~l~-~h~~~V~~va~S 225 (1395)
..+++++++..+|+++.|++|+ +.. .++.+ .+...||.+.+.++|.... .+. ......+. .|...|.+++||
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~--~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawS 94 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPK--YAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPS 94 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EEC--CCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEEC
T ss_pred EEEEECCCCCEEEEEcCCceee--ccc--ccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEEC
Confidence 3488899999999999999999 522 33444 4567899999999884321 111 22222222 568899999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEeccCCC-----CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRSLLRGHTQ-----RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~-----~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
|||++||+++.||.|+|||..+ ++..+. |.. .|.+++| ++||++|++|+.||+|+|||+.++....
T Consensus 95 PdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svaf-SPDG~~LAsgs~DGtVkIWd~~~~~l~~------ 165 (588)
T 2j04_A 95 PIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEW-NPIESSIVVGNEDGELQFFSIRKNSENT------ 165 (588)
T ss_dssp SSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEE-CSSSSCEEEEETTSEEEEEECCCCTTTC------
T ss_pred CCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEE-cCCCCEEEEEcCCCEEEEEECCCCcccc------
Confidence 9999999999999999999654 666667 765 5999999 9999999999999999999999875110
Q ss_pred cceEEEEEEe----cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-ccc
Q 039790 301 GKIVVAIQIL----ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKH 375 (1395)
Q Consensus 301 ~~~i~~l~~~----~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h 375 (1395)
.....+..+ .+|...|.+++|+|++ +++++.++.+.+|+...... ....+.+ .+|
T Consensus 166 -~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-----------------~~~~~tL~~~h 225 (588)
T 2j04_A 166 -PEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-----------------QPVSRMIQNAS 225 (588)
T ss_dssp -CCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-----------------CCCEEEEECCC
T ss_pred -ccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-----------------ccceeeecccc
Confidence 000123333 5577899999999998 77777788888887633210 0012345 478
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEE--eecCCCCCcEEEEEecCCCeEEEEE
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTF--LIGPHPQHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~f--s~~~~pdg~~L~s~Gs~Dg~I~IWD 453 (1395)
...|.+++|+ | .+||+++ |++|++||+.+++......+|.+ .|+.+.| + ||+..|++++ .||+ ++|.
T Consensus 226 ~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s----~d~~~La~a~-edG~-klw~ 294 (588)
T 2j04_A 226 RRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHE----KESTILLMSN-KTSY-KVLL 294 (588)
T ss_dssp SSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTC----SSCEEEEECS-SCEE-EEEE
T ss_pred cCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeC----CCCCEEEEEc-CCCC-EEEe
Confidence 8999999999 5 7999987 69999999998877444448987 9999999 8 9998888865 8999 9999
Q ss_pred CCCCCCCCCCCCcc----cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 454 SAEEEGWLLPSDIE----SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 454 l~tg~~~~~~~~~~----~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
...- ....+.. ..+.+..+..........+..+.+..++|+|||.++|+++
T Consensus 295 ~d~~---~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 295 EDEL---HVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SSSE---EEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred eccE---EECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 7521 0000000 0000000111111111112244556789999999988875
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=2.8e-24 Score=255.13 Aligned_cols=242 Identities=9% Similarity=0.081 Sum_probs=178.0
Q ss_pred cceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IW 285 (1395)
.++..+..|...|++++|++||++|++|+.+| ++|||..++.......+ ..+..++| ..+++++ ++|+.|++|+||
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVRM-LHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEEE-CTTSSEEEEECSSTTEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEEE-cCCCCEEEEEECCccEEEEE
Confidence 45556788999999999999999999998775 78999987653332222 35788888 6667766 678888999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
|+.+++ .+..+. +...+.+++|+++ .++++.++.+.+|+.....+.
T Consensus 87 d~~~~~--------------~~~~~~-~~~~v~~v~~~~~---~~~~~~~~~i~i~d~~~~~~~---------------- 132 (355)
T 3vu4_A 87 DDVKKQ--------------DVSRIK-VDAPVKDLFLSRE---FIVVSYGDVISVFKFGNPWKR---------------- 132 (355)
T ss_dssp ETTTTE--------------EEEEEE-CSSCEEEEEECSS---EEEEEETTEEEEEESSTTCCB----------------
T ss_pred ECCCCc--------------EEEEEE-CCCceEEEEEcCC---EEEEEEcCEEEEEECCCCcee----------------
Confidence 999876 222222 4457888999875 345566888888877543111
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEE--EeCCCcEEEEeCCCCc----------------eeEEecCCCCCCeeEEE
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLAS--ASLDGTVKIWDDRKST----------------PLAVLRPYDGHPVNCVT 427 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaS--gs~Dg~IrIWDl~sg~----------------~l~tl~~h~~~~V~sV~ 427 (1395)
+..+.. ....+++++ .+++. |+.||.|++||++++. ++..+.+|.+ .|++|+
T Consensus 133 ---~~~~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~ 202 (355)
T 3vu4_A 133 ---ITDDIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVR 202 (355)
T ss_dssp ---SSCCEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS-CEEEEE
T ss_pred ---eEEecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEE
Confidence 111111 334556666 34554 6899999999999876 3789999998 999999
Q ss_pred EeecCCCCCcEEEEEecCCCe-EEEEECCCCCCCCCCCCcccccEEEEEe-c-cCcccccccccccceEEEEeCCCCEEE
Q 039790 428 FLIGPHPQHIVLITGGPLNRE-LKIWASAEEEGWLLPSDIESWKCTQTLE-L-KSSAELRLEDAFFNQVVALNRAGLFLL 504 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~-I~IWDl~tg~~~~~~~~~~~~~~l~tl~-~-h~~~i~~~~~~~~~~~l~~S~dg~~La 504 (1395)
|+ |+|.+|++++ .|++ |+|||++++ +++.++. + |...+. .++|+++|.+|+
T Consensus 203 ~s----~~g~~l~s~s-~d~~~v~iwd~~~~------------~~~~~~~~g~h~~~v~---------~~~~s~~~~~l~ 256 (355)
T 3vu4_A 203 LN----RKSDMVATCS-QDGTIIRVFKTEDG------------VLVREFRRGLDRADVV---------DMKWSTDGSKLA 256 (355)
T ss_dssp EC----TTSSEEEEEE-TTCSEEEEEETTTC------------CEEEEEECTTCCSCEE---------EEEECTTSCEEE
T ss_pred EC----CCCCEEEEEe-CCCCEEEEEECCCC------------cEEEEEEcCCCCCcEE---------EEEECCCCCEEE
Confidence 99 9999999977 9998 999999988 9999998 4 665543 599999999999
Q ss_pred EEeCCCeEEEEEcCCCC
Q 039790 505 ANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 505 Sgs~Dg~I~iWdl~~g~ 521 (1395)
+++.|++|++||+..+.
T Consensus 257 s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 257 VVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEETTCEEEEEESSCCS
T ss_pred EEECCCEEEEEEccCCC
Confidence 99999999999998754
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=4.6e-23 Score=246.17 Aligned_cols=267 Identities=7% Similarity=0.060 Sum_probs=203.8
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE-EEEEcCC
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI-CYGLKLG 238 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L-asGs~DG 238 (1395)
.+++++.|+.|++|+... | +.+..+..| ..+.+++|+++|++| ++++.|+
T Consensus 4 l~vs~~~d~~v~v~d~~~--~--------------------------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~ 54 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTS--N--------------------------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSN 54 (391)
T ss_dssp EEEEETTTTEEEEEETTT--T--------------------------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGT
T ss_pred EEEEcCCCCEEEEEECCC--C--------------------------eEEEEeecC-CCcceEEECCCCCEEEEECCCCC
Confidence 578899999999999431 1 233344445 458999999999987 5667899
Q ss_pred eEEEEECCCCce-EEeccCCCCeEEEEEeeCCCCEEE-EEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 239 NIRILNIITALR-SLLRGHTQRVTDMAFFAEDVHLLA-SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 239 ~IrIWd~~~~~~-~~l~~H~~~V~slaf~s~dg~~La-Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
.|++||+.++.. ..+..| ..|.+++| ++++++|+ +++.|+.|++||+.+++ .+..+.. ...
T Consensus 55 ~i~v~d~~~~~~~~~~~~~-~~v~~~~~-spdg~~l~~~~~~~~~v~v~d~~~~~--------------~~~~~~~-~~~ 117 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVPAG-SSPQGVAV-SPDGKQVYVTNMASSTLSVIDTTSNT--------------VAGTVKT-GKS 117 (391)
T ss_dssp EEEEEETTTTEEEEEEECS-SSEEEEEE-CTTSSEEEEEETTTTEEEEEETTTTE--------------EEEEEEC-SSS
T ss_pred eEEEEECCCCeEEEEEECC-CCccceEE-CCCCCEEEEEECCCCEEEEEECCCCe--------------EEEEEeC-CCC
Confidence 999999998864 444444 49999999 88998775 45567999999999876 2233333 345
Q ss_pred ccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEE
Q 039790 317 HPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASA 395 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSg 395 (1395)
+..++|++++..+++++. ++.+.+|+... ++. ...+.. ...+.+++|+|++..+++++
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~-------------------~~~~~~-~~~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAV-------------------INTVSV-GRSPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTT-TEE-------------------EEEEEC-CSSEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCC-CcE-------------------EEEEec-CCCcceEEECCCCCEEEEEe
Confidence 789999999998876666 45566655432 211 333443 35679999999994444788
Q ss_pred eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec--CCCeEEEEECCCCCCCCCCCCcccccEEE
Q 039790 396 SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP--LNRELKIWASAEEEGWLLPSDIESWKCTQ 473 (1395)
Q Consensus 396 s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs--~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~ 473 (1395)
+.|+.|++||+++++++..+..+ . .+.+++|+ |+|++|++++. .|+.|++||+.++ +++.
T Consensus 177 ~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~~----~~g~~l~~~~~~~~~~~v~~~d~~~~------------~~~~ 238 (391)
T 1l0q_A 177 FDSMSISVIDTVTNSVIDTVKVE-A-APSGIAVN----PEGTKAYVTNVDKYFNTVSMIDTGTN------------KITA 238 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECS-S-EEEEEEEC----TTSSEEEEEEECSSCCEEEEEETTTT------------EEEE
T ss_pred CCCCEEEEEECCCCeEEEEEecC-C-CccceEEC----CCCCEEEEEecCcCCCcEEEEECCCC------------eEEE
Confidence 89999999999999988888755 3 79999999 99999998764 6899999999888 8888
Q ss_pred EEeccCcccccccccccceEEEEeCCCCEE-EEEeCCCeEEEEEcCCCC
Q 039790 474 TLELKSSAELRLEDAFFNQVVALNRAGLFL-LANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 474 tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I~iWdl~~g~ 521 (1395)
.+..+... ..+.|+++|.+| ++++.|+.|++||+.+++
T Consensus 239 ~~~~~~~~----------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 239 RIPVGPDP----------AGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEECCSSE----------EEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEecCCCc----------cEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 88765532 258999999877 677899999999998754
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.5e-24 Score=259.40 Aligned_cols=252 Identities=12% Similarity=0.049 Sum_probs=195.0
Q ss_pred eeCCCCCEEEEEEecCCCEE-EEEEcCCeEEEEECC--CC-ceEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 212 YISDPGLVLGRQIAVNRNYI-CYGLKLGNIRILNII--TA-LRSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~L-asGs~DG~IrIWd~~--~~-~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+|.+.|++++|+++|++| ++|+.||.|+|||+. ++ .+..+. .|...|++++| ++++.+|++|+.||.|++|
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI-AEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE-CTTSSEEEEEETTSEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE-cCCCCEEEEEeCCCcEEEE
Confidence 34677899999999999996 899999999999998 65 455554 67789999999 8999999999999999999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCC---CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPH---KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~---~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
++.++..... .+..+..|...+.+++|+|+ +..+++++.++.|.+|+......
T Consensus 177 ~~~~~~~~~~----------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~-------------- 232 (450)
T 2vdu_B 177 DINSIPEEKF----------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI-------------- 232 (450)
T ss_dssp ETTSCCCSSC----------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC--------------
T ss_pred ecCCcccccc----------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce--------------
Confidence 9988763210 01123456788999999999 77777777777787777643211
Q ss_pred cccccceEE-EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC----------------------
Q 039790 363 DELINGVQL-VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD---------------------- 419 (1395)
Q Consensus 363 ~~~~~~~~~-l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~---------------------- 419 (1395)
+.. +.+|...|++++|+ ++ .+|++|+.|++|+|||+++++++..+..+.
T Consensus 233 ------~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 233 ------VDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp ------EEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred ------eeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 333 55899999999999 87 899999999999999999999998886321
Q ss_pred --CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC--CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 420 --GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS--AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 420 --~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl--~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
...|.+++|+ |++++|++++..|+.|+|||+ ..+ ....++..+..+ ..+ ..++
T Consensus 305 ~~~~~v~~i~~~----~~~~~l~~~~~~d~~i~iw~~~~~~~---------~~l~~~~~~~~~-~~v---------~~~~ 361 (450)
T 2vdu_B 305 IIEFAVSKIIKS----KNLPFVAFFVEATKCIIILEMSEKQK---------GDLALKQIITFP-YNV---------ISLS 361 (450)
T ss_dssp CBCCCEEEEEEC----SSSSEEEEEETTCSEEEEEEECSSST---------TCEEEEEEEECS-SCE---------EEEE
T ss_pred cceEEEEEEEEe----CCCCEEEEEECCCCeEEEEEeccCCC---------CceeeccEeccC-Cce---------EEEE
Confidence 1279999999 999999997768999999999 433 334677778776 333 2588
Q ss_pred EeCCCCEEEEEeC------CCeEEEEEcCC
Q 039790 496 LNRAGLFLLANAK------KNAIYAIHMDY 519 (1395)
Q Consensus 496 ~S~dg~~LaSgs~------Dg~I~iWdl~~ 519 (1395)
|++++.+++.++. ++.|.+|.+..
T Consensus 362 ~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 362 AHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 9996555444443 55688888765
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=8.2e-24 Score=248.44 Aligned_cols=262 Identities=13% Similarity=0.130 Sum_probs=195.5
Q ss_pred cccceeeeeCCCCCEEEEEEecC---CCEEEEEEcCCeEEEEECCC-Cc--eEEeccCCCCeEEEEEeeCCCCEEEEEEC
Q 039790 205 EVTPITKYISDPGLVLGRQIAVN---RNYICYGLKLGNIRILNIIT-AL--RSLLRGHTQRVTDMAFFAEDVHLLASASV 278 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spd---g~~LasGs~DG~IrIWd~~~-~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~ 278 (1395)
....+..+.+|.+.|++++|+++ |++|++|+.||.|+|||+.+ +. ...+.+|.+.|++++| ++++++|++|+.
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~ 106 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCW-SDDGSKVFTASC 106 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEE-CTTSSEEEEEET
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEE-CcCCCEEEEEcC
Confidence 34567788899999999999999 69999999999999999997 43 3688899999999999 889999999999
Q ss_pred CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEE--eCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCW--HPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~--sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~ 356 (1395)
||.|++||+.++. .+. ...|...+.+++| ++++..+++++.++.+.+|+......
T Consensus 107 dg~v~iwd~~~~~--------------~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------- 163 (368)
T 3mmy_A 107 DKTAKMWDLSSNQ--------------AIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-------- 163 (368)
T ss_dssp TSEEEEEETTTTE--------------EEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC--------
T ss_pred CCcEEEEEcCCCC--------------cee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE--------
Confidence 9999999999875 222 3447888999999 78877677777777777776543211
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE-EecCCCCCCeeEEEEeecCCCC
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pd 435 (1395)
+..+..| ..+.++.+.. ..+++++.|+.+++||++...... .+.......+.++.+. ++
T Consensus 164 ------------~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 223 (368)
T 3mmy_A 164 ------------MMVLQLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF----KD 223 (368)
T ss_dssp ------------SEEEECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE----EC
T ss_pred ------------EEEEecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc----cc
Confidence 3445444 4677777764 478889999999999998864433 3332222366777776 33
Q ss_pred CcE----EEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc---ccccccceEEEEeCCCCEEEEEeC
Q 039790 436 HIV----LITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR---LEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 436 g~~----L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~---~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
+.. +++++ .|+.|+|||++.. ....++..+..|...... ......+..++|+++|.+|++++.
T Consensus 224 ~~~~~~~~~~~~-~dg~i~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 293 (368)
T 3mmy_A 224 KQNKPTGFALGS-IEGRVAIHYINPP---------NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS 293 (368)
T ss_dssp TTSCEEEEEEEE-TTSEEEEEESSCS---------CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET
T ss_pred CCCCCCeEEEec-CCCcEEEEecCCC---------CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc
Confidence 333 77766 9999999999876 222456667766542100 000112346999999999999999
Q ss_pred CCeEEEEEcCCC
Q 039790 509 KNAIYAIHMDYG 520 (1395)
Q Consensus 509 Dg~I~iWdl~~g 520 (1395)
||.|++||+..+
T Consensus 294 dg~i~iwd~~~~ 305 (368)
T 3mmy_A 294 DGRFSFWDKDAR 305 (368)
T ss_dssp TSCEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 999999999875
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-24 Score=266.06 Aligned_cols=301 Identities=9% Similarity=-0.009 Sum_probs=216.5
Q ss_pred cCCCCCee--ee-CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEE
Q 039790 176 KVPKGRHL--IG-NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSL 252 (1395)
Q Consensus 176 ~sp~Gr~L--~G-~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~ 252 (1395)
|+|||+++ ++ +..|. +. . ....+.+|...|++++|+|+| .++.+.+|+.+......
T Consensus 23 ~SpDG~~iASas~D~TV~--d~----~--------~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~~ 81 (588)
T 2j04_A 23 WARDGTLYLTTFPDISIG--QP----K--------YAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLLN 81 (588)
T ss_dssp ECTTSCEEEECSSSEEEE--EE----C--------CCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSST
T ss_pred ECCCCCEEEEEcCCceee--cc----c--------ccceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEee
Confidence 78999999 33 33444 21 1 112346899999999999999 46666666654333333
Q ss_pred eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC-----CccEEEEeCCCC
Q 039790 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS-----VHPRVCWHPHKQ 327 (1395)
Q Consensus 253 l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~-----~v~~v~~sp~~~ 327 (1395)
+ .|...|.+++| +|+|.+||+++.||+|+|||... .+..+. |.. .+.+++|+|+|+
T Consensus 82 ~-~~~~~V~~vaw-SPdG~~LAs~s~dg~V~iwd~~~----------------~l~~l~-~~~~~~~~sv~svafSPDG~ 142 (588)
T 2j04_A 82 S-QPVCYPRVCKP-SPIDDWMAVLSNNGNVSVFKDNK----------------MLTNLD-SKGNLSSRTYHCFEWNPIES 142 (588)
T ss_dssp T-SCSCCEEEEEE-CSSSSCEEEEETTSCEEEEETTE----------------EEEECC-CSSCSTTTCEEEEEECSSSS
T ss_pred c-CCCCcEEEEEE-CCCCCEEEEEeCCCcEEEEeCCc----------------eeeecc-CCCccccccEEEEEEcCCCC
Confidence 3 56889999999 99999999999999999999532 333344 443 488999999999
Q ss_pred eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE----cccCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 039790 328 EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV----GKHDGEITELSMCQWLTTRLASASLDGTVKI 403 (1395)
Q Consensus 328 ~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l----~~h~~~V~slafspdg~~~LaSgs~Dg~IrI 403 (1395)
.+++++.++.+.+|+.....-.. + ..-.+..+ .+|.+.|.+++|+|+| |++++.|++|++
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~------~-------~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrl 206 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENT------P-------EFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFS 206 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTC------C-------CCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEE
T ss_pred EEEEEcCCCEEEEEECCCCcccc------c-------cceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEE
Confidence 88888888888888864421000 0 00013444 6788999999999986 888999999999
Q ss_pred EeCCCCce---eEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 404 WDDRKSTP---LAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 404 WDl~sg~~---l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
||+..+.. .+++ .+|.. .|.+|+|+ |.+|++++ +++|++||+.++ +......+|.
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~-~V~svaFs------g~~LASa~--~~tIkLWd~~~~------------~~~~~~~gh~ 265 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRR-KITDLKIV------DYKVVLTC--PGYVHKIDLKNY------------SISSLKTGSL 265 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSS-CCCCEEEE------TTEEEEEC--SSEEEEEETTTT------------EEEEEECSCC
T ss_pred EECCCCccccceeeecccccC-cEEEEEEE------CCEEEEEe--CCeEEEEECCCC------------eEEEEEcCCC
Confidence 99988773 4677 47776 89999996 57888865 699999999876 5433333666
Q ss_pred cccccccccccceEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEecCCCCcCcCCCCe
Q 039790 480 SAELRLEDAFFNQVVAL--NRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHI 557 (1395)
Q Consensus 480 ~~i~~~~~~~~~~~l~~--S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~ 557 (1395)
..+. .+.| ++||..|++++.||+ ++|.++. +.+.... ...+..|+.
T Consensus 266 ~~V~---------~va~~~s~d~~~La~a~edG~-klw~~d~---------------------~~~spd~-~l~a~~d~~ 313 (588)
T 2j04_A 266 ENFH---------IIPLNHEKESTILLMSNKTSY-KVLLEDE---------------------LHVTADN-IIAPYLEKK 313 (588)
T ss_dssp SCCC---------EEEETTCSSCEEEEECSSCEE-EEEESSS---------------------EEEECCC-SSHHHHHHH
T ss_pred ceEE---------EEEeeeCCCCCEEEEEcCCCC-EEEeecc---------------------EEECCCc-eEEEEcCCE
Confidence 6543 3899 999999999999999 9999751 2222222 112345889
Q ss_pred EEEEEcCCCceeeecccc-eEEecCCCCC
Q 039790 558 VQIYCVQTQAIQQYALDL-SQCLPPPLEN 585 (1395)
Q Consensus 558 V~lWdv~t~~i~~~~~~~-~~cl~~s~d~ 585 (1395)
|++|+++.+.+..+...+ ..|+.+++|+
T Consensus 314 v~lW~~~g~~l~~~~~~~~I~~va~SPdG 342 (588)
T 2j04_A 314 FKKWSTIWNEFNNYETTLVIHGISLSPDG 342 (588)
T ss_dssp HHHTTTTTTSSSSSCCEEEEEEEEECTTS
T ss_pred EEEEECCCCceeeeccceEEEEEEECCCC
Confidence 999999877654333322 5688888887
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=3.2e-22 Score=238.77 Aligned_cols=267 Identities=11% Similarity=0.085 Sum_probs=199.1
Q ss_pred CEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 229 NYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
.++++++.|+.|++||+.++. +..+.+|. .+.+++| ++++.+| ++++.|++|++||+.+++ .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~-s~dg~~l~~~~~~d~~i~v~d~~~~~--------------~ 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVI-SPDGTKVYVANAHSNDVSIIDTATNN--------------V 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEE-CTTSSEEEEEEGGGTEEEEEETTTTE--------------E
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEE-CCCCCEEEEECCCCCeEEEEECCCCe--------------E
Confidence 467888999999999999885 45566554 5999999 8999876 677799999999998876 2
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
+..+..+. .+.+++|+|++..+++++.+ +.+.+|+... ++. +..+. +...+.+++|+
T Consensus 67 ~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~-~~~-------------------~~~~~-~~~~~~~~~~s 124 (391)
T 1l0q_A 67 IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTV-------------------AGTVK-TGKSPLGLALS 124 (391)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEE-------------------EEEEE-CSSSEEEEEEC
T ss_pred EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC-CeE-------------------EEEEe-CCCCcceEEEC
Confidence 33333333 78899999999988888865 6666666532 211 23333 45578999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
+++..++++++.|+.|++||+.+++++..+..|. .+.+++|+ |+|++|+++++.|+.|++||++++
T Consensus 125 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~----~dg~~l~~~~~~~~~v~~~d~~~~-------- 190 (391)
T 1l0q_A 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR--SPKGIAVT----PDGTKVYVANFDSMSISVIDTVTN-------- 190 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS--SEEEEEEC----TTSSEEEEEETTTTEEEEEETTTT--------
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC--CcceEEEC----CCCCEEEEEeCCCCEEEEEECCCC--------
Confidence 9984344788889999999999999999998775 58999999 999998666668999999999987
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe---CCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEE
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA---KKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILS 542 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs---~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils 542 (1395)
+++..+..+. .+ ..++|+++|.+|++++ .++.|++||+..++ .+..+..+.....
T Consensus 191 ----~~~~~~~~~~-~~---------~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~ 248 (391)
T 1l0q_A 191 ----SVIDTVKVEA-AP---------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--------ITARIPVGPDPAG 248 (391)
T ss_dssp ----EEEEEEECSS-EE---------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--------EEEEEECCSSEEE
T ss_pred ----eEEEEEecCC-Cc---------cceEECCCCCEEEEEecCcCCCcEEEEECCCCe--------EEEEEecCCCccE
Confidence 7777776433 21 2589999999988887 68999999998753 2222322323333
Q ss_pred EecCCC-CcC---cCCCCeEEEEEcCCCcee
Q 039790 543 LTGTTT-DAS---PDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 543 ~~~~~~-d~~---~s~dg~V~lWdv~t~~i~ 569 (1395)
+..... ..+ .+.|+.|++||+.++++.
T Consensus 249 ~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 249 IAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 333220 112 256899999999998764
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.8e-24 Score=249.46 Aligned_cols=265 Identities=10% Similarity=-0.007 Sum_probs=190.2
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYG 234 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasG 234 (1395)
..++..|++|+.||.|++||+. +|+.+ ..+. ...|.++.|+++ +++|
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~--~~~~~--------------------------~~~~--~~~v~~~~~~~~---~~s~ 91 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLK--DSKTI--------------------------TTIT--TPNPRTGGEHPA---IISR 91 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEES--SSSCE--------------------------EEEE--EECCCTTCCCCS---EEEE
T ss_pred cCCCCEEEEECCCCcEEEEECC--CCcEE--------------------------EEEe--cCCceeeeeCCc---eEEe
Confidence 4455789999999999999954 22222 1111 133445556666 8999
Q ss_pred EcCCeEEEEECCC---------Cc-eEEe-ccCCCCeEEEEEeeC--CCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 235 LKLGNIRILNIIT---------AL-RSLL-RGHTQRVTDMAFFAE--DVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 235 s~DG~IrIWd~~~---------~~-~~~l-~~H~~~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
+.|++|++|+... +. +..+ .+|.+.|.+++| ++ ++++|++|+.||+|++||+.+++
T Consensus 92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~s~dg~i~~wd~~~~~---------- 160 (343)
T 3lrv_A 92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYG-HNEVNTEYFIWADNRGTIGFQSYEDDS---------- 160 (343)
T ss_dssp CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEEC-CC---CCEEEEEETTCCEEEEESSSSC----------
T ss_pred cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEc-CCCCCCCEEEEEeCCCcEEEEECCCCc----------
Confidence 9999999997663 32 3333 367789999999 88 99999999999999999999887
Q ss_pred ceEEEEEEe-cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc-cCCCe
Q 039790 302 KIVVAIQIL-ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK-HDGEI 379 (1395)
Q Consensus 302 ~~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~-h~~~V 379 (1395)
.+... ..+...+.+++|+|++..+++++.++.+.+||....... ...+.+ |.+.|
T Consensus 161 ----~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-------------------~~~~~~~h~~~v 217 (343)
T 3lrv_A 161 ----QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-------------------SSRFPVDEEAKI 217 (343)
T ss_dssp ----EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-------------------CEECCCCTTSCE
T ss_pred ----EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-------------------ccEEeccCCCCE
Confidence 23333 445567999999999987777777777777776442210 144556 99999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC---CCCCCee--EEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 380 TELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP---YDGHPVN--CVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~---h~~~~V~--sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
++++|+|++ .+|++++ |++|+|||++++.++..+.. |.. .+. +++|+ |+|++|++++..|+.|+||++
T Consensus 218 ~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 218 KEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF-KTGTVTYDID----DSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC------CCEEEEEC----TTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccc-cccceEEEEC----CCCCEEEEecCCCCcEEEEEE
Confidence 999999998 8999999 55999999999987766554 333 444 69999 999999997733999999999
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC---CCCEEEEEeCCCeEEEEEcC
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR---AGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~---dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.... +.|.. ..+ ..+.|++ ++..|++++.|+.+++|-..
T Consensus 291 ~~~~--------~~~~~--------~~~---------~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 291 DKKT--------KNWTK--------DEE---------SALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CTTT--------CSEEE--------EEE---------EECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred cccc--------cceEe--------cCc---------eeEecCccccccceeEEEecCCceEEEEec
Confidence 7651 12222 111 1355555 78889999999999888643
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=5.6e-23 Score=237.53 Aligned_cols=257 Identities=13% Similarity=0.094 Sum_probs=167.6
Q ss_pred CeEEeecCCCCEEEEeCcCCCC---Cee----eeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC----
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKG---RHL----IGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN---- 227 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~G---r~L----~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd---- 227 (1395)
+-+++++.. .|++|+.. ++ +.+ .....|+.+.+.++-.. ..++..=.-|...|..++|+||
T Consensus 55 ~~~~~~~~~-~v~lw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~v~sla~spd~~~~ 126 (356)
T 2w18_A 55 PCIITACED-VVSLWKAL--DAWQWEKLYTWHFAEVPVLQIVPVPDVYN-----LVCVALGNLEIREIRALFCSSDDESE 126 (356)
T ss_dssp EEEEEEESS-EEEEEEES--SSSBEEEEEEEECCSSCEEEECCCTTCCS-----CEEEEECSSSEEEEEEECC------C
T ss_pred cEEEEeccc-eEEEcccC--CCccceeeEEEeccCceeEEEEEcCcccc-----eeeeeeccccccceEEEEECCCcccc
Confidence 466777765 79999954 34 333 22334666655433211 1122221223456666777777
Q ss_pred CCEEEEEEc--------------------CCeEEEEECCC-C-ceEEeccCCCCeEEEEEeeC---CCCEEEEEECCCcE
Q 039790 228 RNYICYGLK--------------------LGNIRILNIIT-A-LRSLLRGHTQRVTDMAFFAE---DVHLLASASVDGRF 282 (1395)
Q Consensus 228 g~~LasGs~--------------------DG~IrIWd~~~-~-~~~~l~~H~~~V~slaf~s~---dg~~LaSgs~DgtV 282 (1395)
+.++++++. |+.|++|++.. | .+..+.+|...+..++| ++ ++.+|++|+.|++|
T Consensus 127 ~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~f-s~~~g~~~~LaSgS~D~TI 205 (356)
T 2w18_A 127 KQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTF-AEVQGMQEALLGTTIMNNI 205 (356)
T ss_dssp CEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEE-EEEETSTTEEEEEETTSEE
T ss_pred ccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEe-eccCCCCceEEEecCCCcE
Confidence 666666553 88999999844 5 35677889999999999 55 67999999999999
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCC---CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGD---SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~---~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+|||+.+|+ ++..+..+. ..+.+++|+|++..+++..
T Consensus 206 kIWDl~TGk--------------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s-------------------------- 245 (356)
T 2w18_A 206 VIWNLKTGQ--------------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLS-------------------------- 245 (356)
T ss_dssp EEEETTTCC--------------EEEEEECCC---CCCEEEEEEETTEEEEEEC--------------------------
T ss_pred EEEECCCCc--------------EEEEEcCCCcceeeeEEEEECCCCCEEEEec--------------------------
Confidence 999999988 333333222 2344455666553222111
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-----cCCCCCCeeEEEEeecCCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-----RPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-----~~h~~~~V~sV~fs~~~~p 434 (1395)
| +++...+++|+.|++|++||..+++++.++ .+|.+ .+.+..++
T Consensus 246 ---------------~----------~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~s----- 294 (356)
T 2w18_A 246 ---------------H----------PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDVK----- 294 (356)
T ss_dssp -------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEEE-----
T ss_pred ---------------c----------CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEccccC-----
Confidence 1 001124688999999999999999988876 47766 55555553
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
+.++++++ .|++|+|||+.++ +++++|.+|...+. ..++|+|||.+|++|+.|++|||
T Consensus 295 -g~~lASgS-~DgTIkIWDl~tG------------k~l~tL~gH~~~vv--------s~vafSPDG~~LaSGS~D~TIkl 352 (356)
T 2w18_A 295 -DHCAAAIL-TSGTIAIWDLLLG------------QCTALLPPVSDQHW--------SFVKWSGTDSHLLAGQKDGNIFV 352 (356)
T ss_dssp -TTEEEEEE-TTSCEEEEETTTC------------SEEEEECCC--CCC--------CEEEECSSSSEEEEECTTSCEEE
T ss_pred -CCEEEEEc-CCCcEEEEECCCC------------cEEEEecCCCCCeE--------EEEEECCCCCEEEEEECCCcEEE
Confidence 67777754 9999999999999 99999998875432 25899999999999999999999
Q ss_pred EEc
Q 039790 515 IHM 517 (1395)
Q Consensus 515 Wdl 517 (1395)
||+
T Consensus 353 Wd~ 355 (356)
T 2w18_A 353 YHY 355 (356)
T ss_dssp EEE
T ss_pred ecC
Confidence 996
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=3.6e-23 Score=252.09 Aligned_cols=252 Identities=17% Similarity=0.232 Sum_probs=195.8
Q ss_pred ccCCCC-CCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCC-
Q 039790 152 PTLPPP-SDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRN- 229 (1395)
Q Consensus 152 ~s~p~p-~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~- 229 (1395)
+.+.+. +..|++++.||.|++|++...... ........++..+.+|...|++++|++++.
T Consensus 134 l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~------------------~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSK------------------PEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195 (430)
T ss_dssp EEEETTEEEEEEEECSSSCEEEEEGGGSCSS------------------CCTTCCCCCSEEEECCSSCCCCEEECTTSTT
T ss_pred EEECCCCCcEEEEECCCCcEEEEECCCcccc------------------cCccccCCCcEEecCCCCCeEEEEeCCCCCC
Confidence 344443 468899999999999995421000 000112356778889999999999999998
Q ss_pred EEEEEEcCCeEEEEECCCC--------ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 230 YICYGLKLGNIRILNIITA--------LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~--------~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
+|++|+.||.|+|||+..+ ....+.+|...|.+++|++.++.+|++|+.||.|++||++++...
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-------- 267 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-------- 267 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--------
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--------
Confidence 9999999999999999873 145677999999999994337889999999999999999986311
Q ss_pred ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeE
Q 039790 302 KIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEIT 380 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~ 380 (1395)
. .+..+..|...+++++|+|++..++++|. ++.+.+|+...... .+..+.+|...|+
T Consensus 268 ~---~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-------------------~~~~~~~h~~~v~ 325 (430)
T 2xyi_A 268 K---PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-------------------KLHSFESHKDEIF 325 (430)
T ss_dssp S---CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-------------------CSEEEECCSSCEE
T ss_pred c---ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CeEEeecCCCCEE
Confidence 1 12233467888999999999987665555 55566665543221 1567778999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCC--------------CceeEEecCCCCCCeeEEEEeecCCCCCc-EEEEEecC
Q 039790 381 ELSMCQWLTTRLASASLDGTVKIWDDRK--------------STPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLITGGPL 445 (1395)
Q Consensus 381 slafspdg~~~LaSgs~Dg~IrIWDl~s--------------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s~Gs~ 445 (1395)
+++|+|++..+|++++.||.|+|||++. ..++..+.+|.+ .|++++|+ |++. +|++++ .
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~----p~~~~~l~s~s-~ 399 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWN----PNEPWIICSVS-E 399 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEEC----SSSTTEEEEEE-T
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEEC----CCCCCEEEEEE-C
Confidence 9999999867899999999999999987 367888889987 99999999 9999 566655 9
Q ss_pred CCeEEEEECCCC
Q 039790 446 NRELKIWASAEE 457 (1395)
Q Consensus 446 Dg~I~IWDl~tg 457 (1395)
||.|+||++...
T Consensus 400 dg~i~iw~~~~~ 411 (430)
T 2xyi_A 400 DNIMQVWQMAEN 411 (430)
T ss_dssp TSEEEEEEECHH
T ss_pred CCCEEEeEcccc
Confidence 999999999764
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=7.4e-23 Score=242.89 Aligned_cols=261 Identities=10% Similarity=0.086 Sum_probs=175.9
Q ss_pred CEEEEEEecCCCEE-EEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC-CCCC
Q 039790 218 LVLGRQIAVNRNYI-CYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG-PDEE 294 (1395)
Q Consensus 218 ~V~~va~Spdg~~L-asGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg-~~~~ 294 (1395)
.+..+.|.++++++ ++|+.|+.|+|||..++. +..+ .|...|.+++| +++ .++.+ .|+.|+|||+.++ +...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~-~~~~~v~~v~~-~~~--~~~~~-~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI-KVDAPVKDLFL-SRE--FIVVS-YGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE-ECSSCEEEEEE-CSS--EEEEE-ETTEEEEEESSTTCCBSS
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE-ECCCceEEEEE-cCC--EEEEE-EcCEEEEEECCCCceeeE
Confidence 46677888988888 467788999999999885 4444 47779999999 443 45544 4789999999987 4222
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEE--EeCCeEEEEEcCCCCccccccCCCCCccCccccccc-eEE
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILML--AIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING-VQL 371 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~--g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~ 371 (1395)
.+. . ....+++++ ..++++ +.++.+.+|+.......... +... ......+ +..
T Consensus 135 ~~~-----------~------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~--~~~~---~~~~~~p~~~~ 190 (355)
T 3vu4_A 135 DDI-----------R------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQ--DQGV---QQKAILGKGVL 190 (355)
T ss_dssp CCE-----------E------EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------------------CCEE
T ss_pred Eec-----------c------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccc--cccc---cccccCcccEE
Confidence 211 1 122455666 445443 34566777766432210000 0000 0001112 567
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceeEEec-C-CCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGT-VKIWDDRKSTPLAVLR-P-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~-IrIWDl~sg~~l~tl~-~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
+.+|.+.|++++|+|+| .+|++|+.||+ |+|||+++++++.++. + |.+ .|++++|+ |+|.+|++++ .|++
T Consensus 191 ~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s----~~~~~l~s~s-~d~~ 263 (355)
T 3vu4_A 191 IKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWS----TDGSKLAVVS-DKWT 263 (355)
T ss_dssp ECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEEC----TTSCEEEEEE-TTCE
T ss_pred EEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEEC----CCCCEEEEEE-CCCE
Confidence 88999999999999998 89999999998 9999999999999998 6 887 99999999 9999999977 9999
Q ss_pred EEEEECCCCCCCCC--------CCC-cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 449 LKIWASAEEEGWLL--------PSD-IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 449 I~IWDl~tg~~~~~--------~~~-~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
|+|||+..+..... +.. ...|. +..+...... ..-...++|++||.+|++++.||.+++|++..
T Consensus 264 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 264 LHVFEIFNDQDNKRHALKGWINMKYFQSEWS-LCNFKLSVDK------HVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEEEESSCCSCCCSEETTTTEECCCCCCSSC-SEEEECCCCT------TCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEccCCCCcccccccceeeccccccccc-eeEEEeccCC------CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 99999986521000 000 00010 1111111110 00113689999999999999999999999876
Q ss_pred CC
Q 039790 520 GP 521 (1395)
Q Consensus 520 g~ 521 (1395)
+.
T Consensus 337 ~~ 338 (355)
T 3vu4_A 337 DD 338 (355)
T ss_dssp ET
T ss_pred CC
Confidence 54
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=2.7e-22 Score=242.91 Aligned_cols=279 Identities=9% Similarity=0.081 Sum_probs=213.5
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEE
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYI 231 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~L 231 (1395)
+.+.+....+++++.|+.|++||.. .|+.+. . .....+.+|.+.|.+++|+++++++
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~--~g~~~~-------~--------------~~~~~~~~~~~~v~~~~~~~~~~~~ 184 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDIN--SGQTVR-------L--------------SPPEKYKKKLGFVETISIPEHNELW 184 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETT--TCCEEE-------E--------------CCCHHHHTTCCEEEEEEEGGGTEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECC--CCeEee-------e--------------cCcccccccCCceeEEEEcCCCEEE
Confidence 3444455677778888889999843 122110 0 1112456788999999999999999
Q ss_pred EEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEE-EEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 232 CYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 232 asGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
++++.||.|++||+.++ ....+..|...+.+++| ++++.+++ +++.|+.|++||+.+++ .+..
T Consensus 185 ~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~~~d~~~~~--------------~~~~ 249 (433)
T 3bws_A 185 VSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLY-DPIRDLVYCSNWISEDISVIDRKTKL--------------EIRK 249 (433)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEE-ETTTTEEEEEETTTTEEEEEETTTTE--------------EEEE
T ss_pred EEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEE-cCCCCEEEEEecCCCcEEEEECCCCc--------------EEEE
Confidence 99999999999999986 46677789999999999 88888775 55589999999999876 2233
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEe--------CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEE
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAI--------GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITE 381 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~--------~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~s 381 (1395)
+.. ...+..++|+|++..+++++. ++.+.+|+... ++ ......|...+.+
T Consensus 250 ~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~--------------------~~~~~~~~~~~~~ 307 (433)
T 3bws_A 250 TDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK-EK--------------------LIDTIGPPGNKRH 307 (433)
T ss_dssp CCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-TE--------------------EEEEEEEEECEEE
T ss_pred ecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-Cc--------------------EEeeccCCCCcce
Confidence 333 344788999999998888875 45666666532 11 1222246668999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC--------------CC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL--------------NR 447 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~--------------Dg 447 (1395)
++|+|++..++++++.|+.|++||+.+++++..+. +.. .+.+++|+ |+|++|++++.. ||
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~-~~~~~~~s----~dg~~l~~~~~~~~~~~~~~~~~g~~dg 381 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFD-KPNTIALS----PDGKYLYVSCRGPNHPTEGYLKKGLVLG 381 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSS-SEEEEEEC----TTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCC-CCCeEEEc----CCCCEEEEEecCCCccccccccccccce
Confidence 99999985577888999999999999999988887 444 79999999 999998887633 57
Q ss_pred eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcC
Q 039790 448 ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMD 518 (1395)
Q Consensus 448 ~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~ 518 (1395)
.|++||+.++ +++..+..+.. + ..++|+++|.+|++++ .|+.|++|+++
T Consensus 382 ~v~~~d~~~~------------~~~~~~~~~~~-~---------~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTD------------TVKEFWEAGNQ-P---------TGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTT------------EEEEEEECSSS-E---------EEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCC------------cEEEEecCCCC-C---------ceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 9999999888 88888776332 1 3589999999998776 49999999985
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.6e-23 Score=243.78 Aligned_cols=242 Identities=10% Similarity=0.033 Sum_probs=180.2
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccccc
Q 039790 223 QIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILG 301 (1395)
Q Consensus 223 a~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~ 301 (1395)
.+..++++|++|+.||.|+|||+.++. +..+. ...|.++.| .++ +++|+.|++|++|+...... ......+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~-~~~---~~s~s~D~~i~~w~~~~~~~--~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGE-HPA---IISRGPCNRLLLLYPGNQIT--ILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCC-CCS---EEEECSTTEEEEEETTTEEE--EEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeee-CCc---eEEecCCCeEEEEEccCceE--EeecCCc
Confidence 345688999999999999999999874 44444 467888888 555 99999999999998774210 0000011
Q ss_pred ceEEEEEEecCCCCCccEEEEeC--CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCC
Q 039790 302 KIVVAIQILADGDSVHPRVCWHP--HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGE 378 (1395)
Q Consensus 302 ~~i~~l~~~~~~~~~v~~v~~sp--~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~ 378 (1395)
..+. .....|...+.+++|+| ++..+++++.++.+.+|+...... ...+ ..|...
T Consensus 115 ~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--------------------~~~~~~~~~~~ 172 (343)
T 3lrv_A 115 KVLR--EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--------------------YIVHSAKSDVE 172 (343)
T ss_dssp CEEE--EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--------------------EEEECCCSSCC
T ss_pred ceeE--EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--------------------EEEEecCCCCc
Confidence 1111 22335567899999999 888888888888888887643211 2333 345668
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee-EEecC-CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL-AVLRP-YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l-~tl~~-h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
|++++|+|++ .+|++|+.||.|+|||+++++.+ ..+.+ |.+ .|++|+|+ |+|.+|++++ |++|+|||+++
T Consensus 173 i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs----~~g~~l~s~~--~~~v~iwd~~~ 244 (343)
T 3lrv_A 173 YSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFA----DNGYWMVVEC--DQTVVCFDLRK 244 (343)
T ss_dssp CCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEEC----TTSSEEEEEE--SSBEEEEETTS
T ss_pred eEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEe----CCCCEEEEEe--CCeEEEEEcCC
Confidence 9999999998 89999999999999999999988 88998 987 99999999 9999999976 44999999998
Q ss_pred CCCCCCCCCcccccEEEEEec---cCcccccccccccceEEEEeCCCCEEEEEeC-CCeEEEEEcCCCC
Q 039790 457 EEGWLLPSDIESWKCTQTLEL---KSSAELRLEDAFFNQVVALNRAGLFLLANAK-KNAIYAIHMDYGP 521 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~---h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~-Dg~I~iWdl~~g~ 521 (1395)
+ +++.++.. |...+. ...++|+++|.+|++++. |+.|++|++..+.
T Consensus 245 ~------------~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 245 D------------VGTLAYPTYTIPEFKTG-------TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp S------------TTCBSSCCCBC-----C-------CEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred C------------Ccceeeccccccccccc-------ceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 7 33333322 211110 035999999999999998 9999999997643
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=4.8e-22 Score=240.75 Aligned_cols=248 Identities=12% Similarity=0.107 Sum_probs=194.6
Q ss_pred ceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceE------EeccCCCCeEEEEEeeCCCCEEEEEECCCc
Q 039790 208 PITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRS------LLRGHTQRVTDMAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 208 ~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~------~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt 281 (1395)
.+..+..+ ..+.+++|++++.++++++.|+.|++||+.++... .+.+|.+.|++++| ++++.++++++.|+.
T Consensus 115 ~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 115 FISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI-PEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE-GGGTEEEEEEGGGTE
T ss_pred EEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEE-cCCCEEEEEECCCCE
Confidence 34445544 44668999998888888888999999999987533 34589999999999 899999999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCcc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
|++||+.+++ .+..+..+...+.+++|++++..+++++. ++.+.+|+... +..
T Consensus 193 v~~~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~----------- 246 (433)
T 3bws_A 193 VHVFDLKTLA--------------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLE----------- 246 (433)
T ss_dssp EEEEETTTCC--------------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEE-----------
T ss_pred EEEEECCCce--------------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcE-----------
Confidence 9999999876 33444567778899999999998888884 56676666532 211
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEe--------CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS--------LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs--------~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
...+. +...+.+++|+|+| .+|++++ .||.|++||+++++.+..+. |.+ .+.+++|+
T Consensus 247 --------~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~-~~~~~~~~--- 311 (433)
T 3bws_A 247 --------IRKTD-KIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPG-NKRHIVSG--- 311 (433)
T ss_dssp --------EEECC-CCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEE-CEEEEEEC---
T ss_pred --------EEEec-CCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCC-CcceEEEC---
Confidence 23333 34569999999998 7888877 58899999999998877764 444 79999999
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC----
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK---- 508 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~---- 508 (1395)
|++++++++++.|+.|++||+.++ +++..+... ..+ ..++|+++|.+|++++.
T Consensus 312 -~~g~~l~~~~~~~~~v~v~d~~~~------------~~~~~~~~~-~~~---------~~~~~s~dg~~l~~~~~~~~~ 368 (433)
T 3bws_A 312 -NTENKIYVSDMCCSKIEVYDLKEK------------KVQKSIPVF-DKP---------NTIALSPDGKYLYVSCRGPNH 368 (433)
T ss_dssp -SSTTEEEEEETTTTEEEEEETTTT------------EEEEEEECS-SSE---------EEEEECTTSSEEEEEECCCCC
T ss_pred -CCCCEEEEEecCCCEEEEEECCCC------------cEEEEecCC-CCC---------CeEEEcCCCCEEEEEecCCCc
Confidence 999877776669999999999887 777777632 222 25999999998888776
Q ss_pred -----------CCeEEEEEcCCCC
Q 039790 509 -----------KNAIYAIHMDYGP 521 (1395)
Q Consensus 509 -----------Dg~I~iWdl~~g~ 521 (1395)
||.|++||+.+++
T Consensus 369 ~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 369 PTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp TTTCTTSCCSSCCEEEEEETTTTE
T ss_pred cccccccccccceEEEEEECCCCc
Confidence 5799999997753
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.6e-23 Score=270.44 Aligned_cols=245 Identities=16% Similarity=0.138 Sum_probs=198.9
Q ss_pred ccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecC--CC
Q 039790 152 PTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVN--RN 229 (1395)
Q Consensus 152 ~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spd--g~ 229 (1395)
+.+.+++..|++++.||.|++|++... ....+..+.+|.+.|++++|+++ ++
T Consensus 15 l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------~~~~~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp ECCCSSSCCEEEEETTTEEEEEEEETT--------------------------EEEEEEEECCCSSCEEEEEECCTTSCS
T ss_pred EEECCCCCeEEEEECCCcEEEEecCCC--------------------------CCccceeccCCcCceEEEEecCCCCCC
Confidence 556677788999999999999983310 12445677899999999999988 99
Q ss_pred EEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 230 YICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
+|++|+.||.|+|||+.++ ....+.+|...|++++| +++ +.+|++|+.||+|++||+.++...
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~-sp~~~~~~l~sgs~dg~I~vwdl~~~~~~----------- 136 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW-APHEYGPLLLVASSDGKVSVVEFKENGTT----------- 136 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CCGGGCSEEEEEETTSEEEEEECCSSSCC-----------
T ss_pred EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEE-CCCCCCCEEEEEeCCCcEEEEEeecCCCc-----------
Confidence 9999999999999999988 46788899999999999 787 999999999999999999987421
Q ss_pred EEEEEecCCCCCccEEEEeCC-------------CCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 305 VAIQILADGDSVHPRVCWHPH-------------KQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~-------------~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.......|...+.+++|+|. +..+++++.++.+.+|+....... ......
T Consensus 137 -~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~----------------~~~~~~ 199 (753)
T 3jro_A 137 -SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------------YVLEST 199 (753)
T ss_dssp -CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE----------------EEEEEE
T ss_pred -ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc----------------ceeeee
Confidence 11234567888999999994 677777777888888876442211 112466
Q ss_pred EcccCCCeEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCc-----eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 372 VGKHDGEITELSMCQWL--TTRLASASLDGTVKIWDDRKST-----PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 372 l~~h~~~V~slafspdg--~~~LaSgs~Dg~IrIWDl~sg~-----~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+.+|.+.|++++|+|++ +.+|++|+.||+|+|||++++. .+....+|.+ .|++++|+ |+|.+|++++
T Consensus 200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~s----pdg~~l~s~s- 273 (753)
T 3jro_A 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWS----LSGNVLALSG- 273 (753)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEEC----TTTCCEEEEC-
T ss_pred ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEc----CCCCEEEEEc-
Confidence 78899999999999992 3899999999999999999874 3334445776 99999999 9999999977
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.||.|+|||+..+
T Consensus 274 ~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 274 GDNKVTLWKENLE 286 (753)
T ss_dssp SSSCEECCBCCSS
T ss_pred CCCEEEEEecCCC
Confidence 8999999999876
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=1.4e-22 Score=243.88 Aligned_cols=269 Identities=12% Similarity=0.047 Sum_probs=177.6
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEec--------
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAV-------- 226 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Sp-------- 226 (1395)
++....|++++.|++||+|+.... . . .....+..+.+|.+.|++++|+|
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~--~-------~--------------~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~ 154 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNE--T-------I--------------ITQHVLGGKSGHHNFVNDIDIADVYSADNRL 154 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETT--E-------E--------------EEEEEECTTTSCSSCEEEEEEEEEECTTCSE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCC--c-------c--------------ceeeeecccCCCCCceEEEEEccccccccCC
Confidence 444578999999999999994410 0 0 00123456789999999999998
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCC-CEEEEEECCCcEEEEECCCCCCCCCCccc---cc
Q 039790 227 NRNYICYGLKLGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDV-HLLASASVDGRFFIWNITEGPDEEDKPQI---LG 301 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg-~~LaSgs~DgtV~IWdl~tg~~~~~~~~~---~~ 301 (1395)
||++||+|+.|++|||||+.++ +...+.+|...|.+++| +|++ .+|++|+.||+|++||+.++......... ..
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~-~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQF-RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEE-ETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEE-CCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 8999999999999999999776 57778889999999999 6665 68999999999999999987643221100 00
Q ss_pred ceEE--------EEEEecCCCCCccEEEEe-CCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 302 KIVV--------AIQILADGDSVHPRVCWH-PHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 302 ~~i~--------~l~~~~~~~~~v~~v~~s-p~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
.+.. .......+...+.++.|+ +++..+++++.++.+.+|+.........+.. .................
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD-STMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEE
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee-ecCccccEEEccccccc
Confidence 0111 111234567788899987 6777777777777777776643222111100 00000000111112333
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
..+...+..+.+.+.+..++++|+.||+|+|||+.++.++..+.+|.. .|++|+|+ |||++|++++ ++.+.+|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafs----pdG~~LA~as--~~Gv~lv 385 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWH----QDGSHLAIAT--EGSVLLT 385 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-CEEEEEEC----TTSSEEEEEE--SSEEEEE
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-cEEEEEEc----CCCCEEEEEe--CCCeEEE
Confidence 334444444444444435778889999999999999999998888887 99999999 9999999865 4557777
Q ss_pred ECC
Q 039790 453 ASA 455 (1395)
Q Consensus 453 Dl~ 455 (1395)
.+.
T Consensus 386 rL~ 388 (393)
T 4gq1_A 386 RLM 388 (393)
T ss_dssp EEG
T ss_pred EEe
Confidence 653
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=2.2e-20 Score=234.49 Aligned_cols=286 Identities=9% Similarity=0.060 Sum_probs=202.7
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYG 234 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasG 234 (1395)
.+.+..+++.+.|++|++||.. .| +.+.++..+.. +.+++|+|||++|+++
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~--t~--------------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~ 196 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGD--SK--------------------------KIVKVIDTGYA-VHISRMSASGRYLLVI 196 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETT--TC--------------------------CEEEEEECSTT-EEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEEcCCCeEEEEECC--Cc--------------------------eEEEEEecCcc-cceEEECCCCCEEEEE
Confidence 4445677888888899998833 11 23344442222 8899999999999999
Q ss_pred EcCCeEEEEEC--CCCc-eEEeccCCCCeEEEEEeeC----CCCEEEEEEC-CCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 235 LKLGNIRILNI--ITAL-RSLLRGHTQRVTDMAFFAE----DVHLLASASV-DGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 235 s~DG~IrIWd~--~~~~-~~~l~~H~~~V~slaf~s~----dg~~LaSgs~-DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+.|+.|++||+ .++. +..+. +...+..++| ++ +|++|++++. +++|.|||..+++ .+..
T Consensus 197 ~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~-sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-----------~~~~ 263 (543)
T 1nir_A 197 GRDARIDMIDLWAKEPTKVAEIK-IGIEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLE-----------PKQI 263 (543)
T ss_dssp ETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEE-CCSTTCTTTEEEEEEEESSEEEEEETTTCC-----------EEEE
T ss_pred CCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEe-CCCcCCCCCEEEEEEccCCeEEEEeccccc-----------ccee
Confidence 99999999999 6664 45555 4556899999 88 9999998884 8999999998876 2222
Q ss_pred EEEec--------CCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCC
Q 039790 307 IQILA--------DGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG 377 (1395)
Q Consensus 307 l~~~~--------~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~ 377 (1395)
+...+ +.+..+..+.+++++..++++..+ +.+.+|+....... . +..+ .+..
T Consensus 264 i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-----------------~-~~~i-~~~~ 324 (543)
T 1nir_A 264 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-----------------T-VTSI-GAAP 324 (543)
T ss_dssp EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC-----------------E-EEEE-ECCS
T ss_pred ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc-----------------e-eEEe-ccCc
Confidence 22211 123356789999998888777765 55666655332110 0 1223 3667
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC----CCCCCeeEEEEeecCCCC-CcEEEEEecCCCeEEEE
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP----YDGHPVNCVTFLIGPHPQ-HIVLITGGPLNRELKIW 452 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~----h~~~~V~sV~fs~~~~pd-g~~L~s~Gs~Dg~I~IW 452 (1395)
.+.+++|+|+|..+++++..+++|++||+.+++++.++.. |.+ ....+ ++ |+ |..++++...|++|.||
T Consensus 325 ~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g-~g~~~-~~----p~~g~~~~s~~~~d~~V~v~ 398 (543)
T 1nir_A 325 FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG-RGANF-VH----PKYGPVWSTSHLGDGSISLI 398 (543)
T ss_dssp SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT-TCEEE-EE----TTTEEEEEEEBSSSSEEEEE
T ss_pred CccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC-CCccc-CC----CCCccEEEeccCCCceEEEE
Confidence 7889999999933445556789999999999999998874 544 33333 34 77 55555543368999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-------CCCeEEEEEcCCCC
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-------KKNAIYAIHMDYGP 521 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-------~Dg~I~iWdl~~g~ 521 (1395)
|+.+.. .....|++++++..+..... .+.++|+|++|+++. .+++|.+||+.+++
T Consensus 399 d~~~~~-----~~~~~~~~v~~l~~~g~~~~---------~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 399 GTDPKN-----HPQYAWKKVAELQGQGGGSL---------FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp ECCTTT-----CTTTBTSEEEEEECSCSCCC---------CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred EeCCCC-----CchhcCeEEEEEEcCCCCce---------EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 998730 01123799999999875433 388999999999987 27799999999865
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=2.4e-21 Score=223.98 Aligned_cols=211 Identities=16% Similarity=0.081 Sum_probs=156.7
Q ss_pred ccCCCC----CCeEEeecCCCCEEEEeCcCCCCCee-e-e---CceEEEEEeccCCCccCcccccceeeeeCCCCCEEEE
Q 039790 152 PTLPPP----SDSTVVIPSAPPVRLRSSKVPKGRHL-I-G---NHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGR 222 (1395)
Q Consensus 152 ~s~p~p----~~~Las~s~Dg~Vrlwd~~sp~Gr~L-~-G---~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~v 222 (1395)
+..+++ ...+++++.+ +++|++ ++|+++ . + +..|..+++.++|. .+..+.+|...+..+
T Consensus 117 la~spd~~~~~~~l~s~g~~--~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~--------~~~s~~~~~~~v~~l 184 (356)
T 2w18_A 117 LFCSSDDESEKQVLLKSGNI--KAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGG--------GKENQFLMPPEETIL 184 (356)
T ss_dssp ECC------CCEEEEEEEEE--EEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSC--------EEEEEEECCCSSCEE
T ss_pred EEECCCccccccEEEeCCCe--EEEEec--CCCcEEEecccCCCCcEEEEEECCCCc--------eeeeeccCCCceeeE
Confidence 556666 6788888755 889995 578888 3 3 77888888876553 456777899999999
Q ss_pred EEec---CCCEEEEEEcCCeEEEEECCCCc-eEEeccCC---CCeEEEEEeeCCCCEE------------EEEECCCcEE
Q 039790 223 QIAV---NRNYICYGLKLGNIRILNIITAL-RSLLRGHT---QRVTDMAFFAEDVHLL------------ASASVDGRFF 283 (1395)
Q Consensus 223 a~Sp---dg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~---~~V~slaf~s~dg~~L------------aSgs~DgtV~ 283 (1395)
+|++ ++.+|++|+.|++|+|||+.+|. ++++.+|. ..|.+++| +++|.++ ++|+.|++|+
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf-SpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY-SEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE-EETTEEEEEEC------------CCEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE-CCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 9999 78999999999999999999984 67887654 36778899 8899877 5577778888
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+||..+++ .+. ++.+..
T Consensus 264 lWd~~tgk--------------~l~-----------------------------v~~~~~-------------------- 280 (356)
T 2w18_A 264 VINPKTTL--------------SVG-----------------------------VMLYCL-------------------- 280 (356)
T ss_dssp EEETTTTE--------------EEE-----------------------------EEEECC--------------------
T ss_pred EEECCCCE--------------EEE-----------------------------EEEeec--------------------
Confidence 88877665 110 000000
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
..+|.+.+.+..++ + .++|+|+.||+|||||+.+|+++++|.+|....+.+++|+ |||++|++++
T Consensus 281 --------p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS----PDG~~LaSGS 345 (356)
T 2w18_A 281 --------PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS----GTDSHLLAGQ 345 (356)
T ss_dssp --------CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC----SSSSEEEEEC
T ss_pred --------cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC----CCCCEEEEEE
Confidence 12355555555554 5 7999999999999999999999999999986234569999 9999999965
Q ss_pred cCCCeEEEEEC
Q 039790 444 PLNRELKIWAS 454 (1395)
Q Consensus 444 s~Dg~I~IWDl 454 (1395)
.|++|||||+
T Consensus 346 -~D~TIklWd~ 355 (356)
T 2w18_A 346 -KDGNIFVYHY 355 (356)
T ss_dssp -TTSCEEEEEE
T ss_pred -CCCcEEEecC
Confidence 9999999996
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=5.2e-20 Score=231.05 Aligned_cols=326 Identities=11% Similarity=0.045 Sum_probs=224.7
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC--CCCCCCCCCccc
Q 039790 223 QIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI--TEGPDEEDKPQI 299 (1395)
Q Consensus 223 a~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl--~tg~~~~~~~~~ 299 (1395)
.|++++.++++++.|++|++||..++. +..+..+.. +..++| +++|++|++++.|++|++||+ .+++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~-spdg~~l~v~~~d~~V~v~D~~~~t~~-------- 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRM-SASGRYLLVIGRDARIDMIDLWAKEPT-------- 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEE-CTTSCEEEEEETTSEEEEEETTSSSCE--------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEE-CCCCCEEEEECCCCeEEEEECcCCCCc--------
Confidence 378999999999999999999999884 556663333 899999 999999999999999999999 5554
Q ss_pred ccceEEEEEEecCCCCCccEEEEeC----CCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 300 LGKIVVAIQILADGDSVHPRVCWHP----HKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~~~~v~~v~~sp----~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
.+..+. .......++|+| +++++++++. ++.+.+||... .+. +..+..
T Consensus 214 ------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~-------------------~~~i~~ 266 (543)
T 1nir_A 214 ------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEP-------------------KQIVST 266 (543)
T ss_dssp ------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCE-------------------EEEEEC
T ss_pred ------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-ccc-------------------ceeecc
Confidence 222333 234567899999 9998888885 56777776532 211 222221
Q ss_pred ----------cCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeE--EecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 375 ----------HDG-EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLA--VLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 375 ----------h~~-~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~--tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
|.. .+..+.|++++..++++...+++|.+||+.+++.+. ++. +.. .+..+.|+ |+|++|++
T Consensus 267 ~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~-~~~~~~~s----pdg~~l~v 340 (543)
T 1nir_A 267 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP-FLHDGGWD----SSHRYFMT 340 (543)
T ss_dssp CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS-SCCCEEEC----TTSCEEEE
T ss_pred cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCc-CccCceEC----CCCCEEEE
Confidence 333 799999999987888899999999999999876555 443 444 79999999 99999888
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEe-CCCeEEEEEcCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANA-KKNAIYAIHMDY 519 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs-~Dg~I~iWdl~~ 519 (1395)
++..+++|.+||+.++ +++.++...... +.... ...++++ |.+++++. .|++|.+|++.+
T Consensus 341 a~~~~~~v~v~D~~tg------------~l~~~i~~g~~p----h~g~g--~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 341 AANNSNKVAVIDSKDR------------RLSALVDVGKTP----HPGRG--ANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEGGGTEEEEEETTTT------------EEEEEEECSSSB----CCTTC--EEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EecCCCeEEEEECCCC------------eEEEeeccCCCC----CCCCC--cccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 7767999999999998 899888752211 00000 1224566 77777775 689999999987
Q ss_pred CCCCCCcceeeeeeeeccc-cEEEEecCCCCc--C-cC--------CCCeEEEEEcCCCcee-ee-----------cccc
Q 039790 520 GPNPASTRMDYIAEFTVTM-PILSLTGTTTDA--S-PD--------GEHIVQIYCVQTQAIQ-QY-----------ALDL 575 (1395)
Q Consensus 520 g~~~~~~~~~~i~~f~~~~-~ils~~~~~~d~--~-~s--------~dg~V~lWdv~t~~i~-~~-----------~~~~ 575 (1395)
+... ....+.+..+..+. ..+.+..+. ++ + .+ .++.|.|||+.+++.. +. +...
T Consensus 403 ~~~~-~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~ 480 (543)
T 1nir_A 403 KNHP-QYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR 480 (543)
T ss_dssp TTCT-TTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE
T ss_pred CCCc-hhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc
Confidence 3221 11133444444432 222222222 21 1 11 2679999999998654 22 1223
Q ss_pred eEEecCCCCC--eecc----cCCCceEEEeecCCCCcceeec
Q 039790 576 SQCLPPPLEN--AELE----KTDSNATRAFDVANPDGSASLE 611 (1395)
Q Consensus 576 ~~cl~~s~d~--l~~~----~sd~~v~~iWD~~tg~~~~~l~ 611 (1395)
..-+.|++++ +.++ .++++.+.+||..|+++.+++.
T Consensus 481 ~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 481 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 4455666665 3322 1345667799999999999888
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.86 E-value=5.2e-20 Score=223.42 Aligned_cols=225 Identities=13% Similarity=0.107 Sum_probs=174.1
Q ss_pred CCEEEEEEcC------CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC---cEEEEECCCCCCCCCCcc
Q 039790 228 RNYICYGLKL------GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG---RFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 228 g~~LasGs~D------G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg---tV~IWdl~tg~~~~~~~~ 298 (1395)
+..|++++.+ +.|++||+.++....+.+|.+.|.+++| +++|++|++++.|+ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~-Spdg~~la~~s~~~~~~~i~~~d~~tg~------- 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAW-SPDGSKLAYVTFESGRSALVIQTLANGA------- 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEE-CTTSSEEEEEECTTSSCEEEEEETTTCC-------
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEE-cCCCCEEEEEEecCCCcEEEEEECCCCc-------
Confidence 6677777664 7999999998888888999999999999 99999999999886 99999999886
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC---CeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG---NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~---~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
.. .+..+...+.+++|+|++..+++++.. ..+++|+... +. ...+..|
T Consensus 215 -------~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~--------------------~~~l~~~ 265 (415)
T 2hqs_A 215 -------VR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ--------------------IRQVTDG 265 (415)
T ss_dssp -------EE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CC--------------------EEECCCC
T ss_pred -------EE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CC--------------------EEeCcCC
Confidence 22 233455678899999999988866653 2366666532 11 3456678
Q ss_pred CCCeEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecC--CCeEE
Q 039790 376 DGEITELSMCQWLTTRLASASL-DG--TVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL--NRELK 450 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~-Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~--Dg~I~ 450 (1395)
...+.+++|+||| ++|++++. ++ .|++||+.+++. ..+..|.. .+.+++|+ |||++|++++.. ++.|+
T Consensus 266 ~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~-~~~~~~~s----pdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 266 RSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGS-QNQDADVS----SDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp SSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-EECCCSSS-EEEEEEEC----TTSSEEEEEEECSSCEEEE
T ss_pred CCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCE-EEEecCCC-cccCeEEC----CCCCEEEEEECcCCceEEE
Confidence 8899999999999 77777775 45 677889988764 45556665 89999999 999999987744 35899
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC---eEEEEEcCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN---AIYAIHMDY 519 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg---~I~iWdl~~ 519 (1395)
+||+.++ ++. .+..+. ....++|++||.+|++++.++ .|++||+..
T Consensus 339 ~~d~~~~------------~~~-~l~~~~----------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 339 KQDLATG------------GVQ-VLSSTF----------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp EEETTTC------------CEE-ECCCSS----------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred EEECCCC------------CEE-EecCCC----------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 9999887 543 333332 123589999999999888777 799999864
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.84 E-value=2.5e-18 Score=200.08 Aligned_cols=280 Identities=6% Similarity=0.020 Sum_probs=194.9
Q ss_pred CeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEc-C
Q 039790 159 DSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLK-L 237 (1395)
Q Consensus 159 ~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~-D 237 (1395)
..+++.+.++.|++||.. .|+ .+..+..+...+ +++|+++|++|++++. +
T Consensus 11 ~~~v~~~~~~~v~~~d~~--~~~--------------------------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~ 61 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTD--TLE--------------------------ILNQITLGYDFV-DTAITSDCSNVVVTSDFC 61 (331)
T ss_dssp EEEEEEGGGTEEEEEETT--TCC--------------------------EEEEEECCCCEE-EEEECSSSCEEEEEESTT
T ss_pred EEEEEecCCCeEEEEeCc--ccc--------------------------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCC
Confidence 456777888889999843 121 122223344556 8999999998777765 8
Q ss_pred CeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCC---cEEEEECCCCCCCCCCcccccceEEEEEEecC
Q 039790 238 GNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDG---RFFIWNITEGPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 238 G~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg---tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
+.|++||..++. ...+..+...+.+++| ++++++|+++..++ .|++||+.+++ .+..+..
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~i~v~d~~~~~--------------~~~~~~~ 126 (331)
T 3u4y_A 62 QTLVQIETQLEPPKVVAIQEGQSSMADVDI-TPDDQFAVTVTGLNHPFNMQSYSFLKNK--------------FISTIPI 126 (331)
T ss_dssp CEEEEEECSSSSCEEEEEEECSSCCCCEEE-CTTSSEEEECCCSSSSCEEEEEETTTTE--------------EEEEEEC
T ss_pred CeEEEEECCCCceeEEecccCCCCccceEE-CCCCCEEEEecCCCCcccEEEEECCCCC--------------eEEEEEC
Confidence 999999999885 5566667666666999 89999999555553 89999998876 2222222
Q ss_pred CCCCccEEEEeCCCCeEEEEEeC-Ce-EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 313 GDSVHPRVCWHPHKQEILMLAIG-NR-ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 313 ~~~~v~~v~~sp~~~~lla~g~~-~~-ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
......++|+|+++++++++.+ +. +.+|+....+... ... ...+ .+...+.+++|+|+|..
T Consensus 127 -~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~-------------~~~--~~~~-~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 127 -PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF-------------DTG--QEFI-SGGTRPFNITFTPDGNF 189 (331)
T ss_dssp -CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE-------------EEE--EEEE-CSSSSEEEEEECTTSSE
T ss_pred -CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe-------------ecC--Cccc-cCCCCccceEECCCCCE
Confidence 2345789999999988888765 66 7777664322110 000 1222 34556899999999943
Q ss_pred EEEEEeCCCcEEEEeCCCCce---eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 391 RLASASLDGTVKIWDDRKSTP---LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~---l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+++++..++.|++||+.+++. +..+..+. .+..++|+ |||++|++++..++.|.+||+.++
T Consensus 190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~--~~~~~~~s----pdg~~l~v~~~~~~~i~~~d~~~~---------- 253 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQNPENITLLNAVGTNN--LPGTIVVS----RDGSTVYVLTESTVDVFNFNQLSG---------- 253 (331)
T ss_dssp EEEEETTTTEEEEEECSSTTSCEEEEEEECSS--CCCCEEEC----TTSSEEEEECSSEEEEEEEETTTT----------
T ss_pred EEEEeCCCCeEEEEECCCCcccceeeeccCCC--CCceEEEC----CCCCEEEEEEcCCCEEEEEECCCC----------
Confidence 556666789999999999988 88887653 68999999 999988776657889999999887
Q ss_pred cccE--EEEEeccCcccccccccccceEEEEeCCCCEEEE-EeCCCeEEEEEcCC
Q 039790 468 SWKC--TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLA-NAKKNAIYAIHMDY 519 (1395)
Q Consensus 468 ~~~~--l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS-gs~Dg~I~iWdl~~ 519 (1395)
+. +..+..+... .....+....++|++||.+|+. +..++.|++|++..
T Consensus 254 --~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 254 --TLSFVKSFGHGLLI--DPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp --EEEEEEEEECCCCC--CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred --ceeeeccccccccc--CCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 44 4444432100 0011112235899999998754 55677999999975
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.83 E-value=1.6e-18 Score=210.18 Aligned_cols=224 Identities=14% Similarity=0.140 Sum_probs=174.6
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCC---eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEE-EEECCCc--E
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLG---NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLA-SASVDGR--F 282 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG---~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~La-Sgs~Dgt--V 282 (1395)
+..+.+|...|.+++|+|||++|++++.++ .|++||+.++....+..|.+.+.+++| ++||++|+ +++.||. |
T Consensus 171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~-spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAF-SPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEE-CTTSSEEEEEECTTSSCEE
T ss_pred CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEE-cCCCCEEEEEEecCCCceE
Confidence 455667888999999999999999999885 999999999987788889999999999 99999887 6666665 9
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
++||+.+++ ...+..+...+..++|+|++..+++++..+ .+++|+... +.
T Consensus 250 ~~~d~~~~~---------------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~----------- 302 (415)
T 2hqs_A 250 YVMDLASGQ---------------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA----------- 302 (415)
T ss_dssp EEEETTTCC---------------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-----------
T ss_pred EEEECCCCC---------------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-----------
Confidence 999998876 123445567788999999999888887644 455555432 11
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg 436 (1395)
...+..|...+.+++|+|+| ++|++++.+ +.|++||+.++++ ..+..|. .+.+++|+ |||
T Consensus 303 ---------~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~s----pdg 365 (415)
T 2hqs_A 303 ---------PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF--LDETPSLA----PNG 365 (415)
T ss_dssp ---------CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE-EECCCSS--SCEEEEEC----TTS
T ss_pred ---------EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCE-EEecCCC--CcCCeEEc----CCC
Confidence 23344577789999999999 788777764 5899999998876 4566553 79999999 999
Q ss_pred cEEEEEecCCC---eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 437 IVLITGGPLNR---ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 437 ~~L~s~Gs~Dg---~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
++|++++ .|+ .|++||+.. .++..+..+.+.+. .++|+|.-
T Consensus 366 ~~l~~~s-~~~~~~~l~~~d~~g-------------~~~~~l~~~~~~v~---------~~~~~~~~ 409 (415)
T 2hqs_A 366 TMVIYSS-SQGMGSVLNLVSTDG-------------RFKARLPATDGQVK---------FPAWSPYL 409 (415)
T ss_dssp SEEEEEE-EETTEEEEEEEETTS-------------CCEEECCCSSSEEE---------EEEECCCC
T ss_pred CEEEEEE-cCCCccEEEEEECCC-------------CcEEEeeCCCCCCc---------CCcccccc
Confidence 9999877 455 899999864 55667777765543 37777653
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=7.2e-18 Score=196.14 Aligned_cols=255 Identities=11% Similarity=0.133 Sum_probs=174.3
Q ss_pred CCCCEEEEEEecCCCEEEEEEcC-CeEEEEECC--CCce---EEeccCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEEC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKL-GNIRILNII--TALR---SLLRGHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNI 287 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~D-G~IrIWd~~--~~~~---~~l~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl 287 (1395)
|...+.+++|+++|++|++++.+ +.|++|++. ++.. ..+..+. .+.+++| ++++++|++++. ++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIST-DHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEE-CTTSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEE-cCCCCEEEEEecCCCeEEEEEC
Confidence 55678889999999999999886 999999998 5532 3344333 8899999 899998876665 889999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
..+. ....+..... ...+..++|+|++..+++++ .++.+.+|+....+.....
T Consensus 114 ~~~~-----------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-------------- 167 (343)
T 1ri6_A 114 EDGL-----------PVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ-------------- 167 (343)
T ss_dssp ETTE-----------EEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE--------------
T ss_pred CCCc-----------cccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee--------------
Confidence 6332 1112233332 34577899999999888888 6777888776432221000
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--Cce--eEEec----CCC-CCCeeEEEEeecCCCCCc
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--STP--LAVLR----PYD-GHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--g~~--l~tl~----~h~-~~~V~sV~fs~~~~pdg~ 437 (1395)
............+.+++|+|++..+++++..++.|++||+.. +.. +..+. ++. ...+.+++|+ |+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s----~dg~ 243 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT----PDGR 243 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC----TTSS
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC----CCCC
Confidence 000112223457889999999933445555899999999953 432 33332 111 1257789999 9999
Q ss_pred EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-CCCeEEEEE
Q 039790 438 VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-KKNAIYAIH 516 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWd 516 (1395)
+|++++..|+.|++||+.... ...+.+..+..+.. + ..++|+++|.+|++++ .++.|++|+
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~-~---------~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDG--------SVLSKEGFQPTETQ-P---------RGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTS--------CCEEEEEEEECSSS-C---------CCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCC--------CceEEeeeecCCCc-c---------ceEEECCCCCEEEEecCCCCeEEEEE
Confidence 888767689999999997320 12245555554432 2 2489999999888777 689999997
Q ss_pred cCC
Q 039790 517 MDY 519 (1395)
Q Consensus 517 l~~ 519 (1395)
++.
T Consensus 306 ~d~ 308 (343)
T 1ri6_A 306 IVG 308 (343)
T ss_dssp EET
T ss_pred EcC
Confidence 753
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=1.6e-18 Score=234.80 Aligned_cols=240 Identities=15% Similarity=0.075 Sum_probs=182.5
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc-----------CCCCeEEEEEee-CCCCEEEEEE
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG-----------HTQRVTDMAFFA-EDVHLLASAS 277 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~-----------H~~~V~slaf~s-~dg~~LaSgs 277 (1395)
..+..|. .+.+++|++||++|+++. ++.|++||+..+.+..+.+ |...|.+++| + ++|++|++++
T Consensus 239 ~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~-S~pdG~~la~~~ 315 (1045)
T 1k32_A 239 RKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDF-SPLDGDLIAFVS 315 (1045)
T ss_dssp EECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEE-EECGGGCEEEEE
T ss_pred eEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeee-cCCCCCEEEEEE
Confidence 3444454 356679999999999984 8999999996665555555 4457999999 8 9999999888
Q ss_pred CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC-CccEEEEeCCCCeEEEEEeCCeEE-EEEcCCCCccccccCC
Q 039790 278 VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS-VHPRVCWHPHKQEILMLAIGNRIL-KIDSNRVGKGERFSAE 355 (1395)
Q Consensus 278 ~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~-~v~~v~~sp~~~~lla~g~~~~ii-~~d~~~~~~~~~~s~~ 355 (1395)
++.|++|++..+. ... +..+.. .+..++|+ ++..++.++.+..+. +|+.. .+.
T Consensus 316 -~~~i~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~------- 370 (1045)
T 1k32_A 316 -RGQAFIQDVSGTY--------------VLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGK------- 370 (1045)
T ss_dssp -TTEEEEECTTSSB--------------EEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCC-------
T ss_pred -cCEEEEEcCCCCc--------------eEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCC-------
Confidence 7899999998765 112 233444 67789999 887777776655555 44432 111
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCC
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pd 435 (1395)
...+.+|...+.+++|+||| ++|++++.|+.|++||+.+++....+.+|.+ .+.+++|+ ||
T Consensus 371 -------------~~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~-~v~~~~~S----pD 431 (1045)
T 1k32_A 371 -------------AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTIS----DN 431 (1045)
T ss_dssp -------------EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEEC----TT
T ss_pred -------------ceEecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCC-CccceEEC----CC
Confidence 23334688899999999998 8999999999999999999998888878887 89999999 99
Q ss_pred CcEEEEEecCC---------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEE
Q 039790 436 HIVLITGGPLN---------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 436 g~~L~s~Gs~D---------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
|++|++++..+ +.|++||+.++ + +..+..+.... ..++|++||.+|+++
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g------------~-~~~l~~~~~~~---------~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR------------K-IFAATTENSHD---------YAPAFDADSKNLYYL 489 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTT------------E-EEECSCSSSBE---------EEEEECTTSCEEEEE
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCC------------c-EEEeeCCCccc---------CCceEcCCCCEEEEE
Confidence 99998876322 49999999876 5 44555444322 248899999999999
Q ss_pred eCCCeEEEEEcC
Q 039790 507 AKKNAIYAIHMD 518 (1395)
Q Consensus 507 s~Dg~I~iWdl~ 518 (1395)
+.++...+|+..
T Consensus 490 s~~~~~~~~~~~ 501 (1045)
T 1k32_A 490 SYRSLDPSPDRV 501 (1045)
T ss_dssp ESCCCCCEECSS
T ss_pred ecccCCcCcchh
Confidence 988877777643
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.81 E-value=2.9e-18 Score=194.08 Aligned_cols=237 Identities=11% Similarity=0.013 Sum_probs=170.1
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCC-Cce-EEeccC-CCCeEEEEEeeCCCCEEEEEE--CCCcEEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIIT-ALR-SLLRGH-TQRVTDMAFFAEDVHLLASAS--VDGRFFIW 285 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~-~~~-~~l~~H-~~~V~slaf~s~dg~~LaSgs--~DgtV~IW 285 (1395)
.+..|...|.+++|+|+|++|++++ ++.|++||+.+ +.. ..+.+| ...|.+++| ++++++|++++ .++.++||
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI-SPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE-CTTSSEEEEEECTTTSSCEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE-CCCCCEEEEEEeCCCCcceEE
Confidence 3445778899999999999999987 78999999998 753 344455 478999999 89999999999 44455555
Q ss_pred EC--CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 286 NI--TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 286 dl--~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.+ .++. ...+..+ ..+..++|+|++..+++++ .++.+.+|.......
T Consensus 114 ~~~~~~~~---------------~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-------------- 163 (297)
T 2ojh_A 114 LLPSTGGT---------------PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-------------- 163 (297)
T ss_dssp EEETTCCC---------------CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--------------
T ss_pred EEECCCCc---------------eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC--------------
Confidence 54 4433 1112222 2367889999999888555 455554444321111
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCC-CCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDR-KSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~-sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
....+..|...+.+++|+|+| .+|+.++ .|+.++||++. .+..+..+..|.. .+.+++|+ |+|++|+
T Consensus 164 -----~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~s----~dg~~l~ 232 (297)
T 2ojh_A 164 -----VETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY-GDWFPHPS----PSGDKVV 232 (297)
T ss_dssp -----CEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCEEECCCCSE-EEEEEEEC----TTSSEEE
T ss_pred -----cceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCcEEEecCCc-ccCCeEEC----CCCCEEE
Confidence 134455688899999999998 6666555 69999999987 5667788888876 89999999 9999998
Q ss_pred EEecCC-----------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC
Q 039790 441 TGGPLN-----------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK 509 (1395)
Q Consensus 441 s~Gs~D-----------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D 509 (1395)
+++ .+ +.|++||+.++ ....+..+..|...+. .+.|+++|.+|++++.+
T Consensus 233 ~~~-~~~~~~~~~~~~~~~l~~~d~~~~----------~~~~~~~~~~~~~~~~---------~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 233 FVS-YDADVFDHPRDLDVRVQLMDMDGG----------NVETLFDLFGGQGTMN---------SPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEE-EETTCCSCCSSEEEEEEEEETTSC----------SCEEEEEEEESTTTSC---------SCCBCTTSSEEEEEEEC
T ss_pred EEE-cCCCCCcccccCceEEEEEecCCC----------CceeeeccCCCCcccc---------cceECCCCCEEEEEEec
Confidence 876 43 57999999876 1133444445554433 37889999999888765
Q ss_pred C
Q 039790 510 N 510 (1395)
Q Consensus 510 g 510 (1395)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 4
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.81 E-value=3.5e-18 Score=222.28 Aligned_cols=297 Identities=10% Similarity=0.094 Sum_probs=196.1
Q ss_pred cccCCCCCCeEEeecC-CC-----CEEEEeCcCCCCCee--e-eCceEEEEEeccCCCccCcc--cccceeeeeCCCCCE
Q 039790 151 SPTLPPPSDSTVVIPS-AP-----PVRLRSSKVPKGRHL--I-GNHSVYDIDVRLDGEVQPQL--EVTPITKYISDPGLV 219 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~-Dg-----~Vrlwd~~sp~Gr~L--~-G~~~v~~v~~~~~G~~~~~~--~~~~i~~l~~h~~~V 219 (1395)
.+.+++++..|++++. |+ .|++|++.. |+.. . +.... ++|..+..- .......+. ....|
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~--g~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~v 111 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS--GQTRLLVDSKVVL------PGTETLSDEEKARRERQRIA-AMTGI 111 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTT--CCEEEEECGGGTC---------------------------CCEES
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCC--CceeEccchhhcc------cccccccchhhhhhhhhhhc-cccCc
Confidence 3678889999999988 88 899999543 3322 1 10000 000000000 000001111 11346
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCC---ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITA---LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~---~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
.+++|||||++|++++. +.|++||+.++ ....+..|...+.+++| ++||++|+.++. +.|++||+.+++
T Consensus 112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~-SPDG~~la~~~~-~~i~~~d~~~g~----- 183 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKL-SPKGGFVSFIRG-RNLWVIDLASGR----- 183 (741)
T ss_dssp CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEE-CTTSSEEEEEET-TEEEEEETTTTE-----
T ss_pred ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccC-CCCCCEEEEEeC-CcEEEEecCCCC-----
Confidence 78899999999999987 99999999998 78888889999999999 999999999884 699999998875
Q ss_pred cccccceEEEEEEecCCCC----------------CccEEEEeCCCCeEEEEEeCC------------------------
Q 039790 297 PQILGKIVVAIQILADGDS----------------VHPRVCWHPHKQEILMLAIGN------------------------ 336 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~----------------~v~~v~~sp~~~~lla~g~~~------------------------ 336 (1395)
...+...+.. .+..+.|+|++..|++++.++
T Consensus 184 ---------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 184 ---------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp ---------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred ---------EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 1122222221 146799999999888887654
Q ss_pred ---------eEEEEEcCCCCccccccCCCCCccCccccccceEEEc--ccCCCeEEEEEecCCCcEEEEEeC-----CCc
Q 039790 337 ---------RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG--KHDGEITELSMCQWLTTRLASASL-----DGT 400 (1395)
Q Consensus 337 ---------~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~--~h~~~V~slafspdg~~~LaSgs~-----Dg~ 400 (1395)
.+.+|+....+. ...... .|...+.+++| ||| ++|+.++. ++.
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~ 313 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQ-------------------TQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLD 313 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCC-------------------CEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEE
T ss_pred CCCCCCCeeEEEEEECCCCCc-------------------eEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEE
Confidence 222222211011 011111 47788999999 999 67776654 568
Q ss_pred EEEEeCCCCceeEEecCCCCC---CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 401 VKIWDDRKSTPLAVLRPYDGH---PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 401 IrIWDl~sg~~l~tl~~h~~~---~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
|++||+.++++...+..+... .+.+++|+ |||+++++++ .|+.++||.+... .. ...+..
T Consensus 314 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s----pdg~~~~~~~-~~g~~~l~~~~~~-----------~~-~~~l~~ 376 (741)
T 2ecf_A 314 LVEVTLASNQQRVLAHETSPTWVPLHNSLRFL----DDGSILWSSE-RTGFQHLYRIDSK-----------GK-AAALTH 376 (741)
T ss_dssp EEEEETTTCCEEEEEEEECSSCCCCCSCCEEC----TTSCEEEEEC-TTSSCEEEEECSS-----------SC-EEESCC
T ss_pred EEEEECCCCceEEEEEcCCCCcCCcCCceEEC----CCCeEEEEec-CCCccEEEEEcCC-----------CC-eeeeee
Confidence 999999999988877766532 34689999 9999777654 8998999987632 03 445544
Q ss_pred cCcccccccccccceEEEEeCCCCEEEEE-eCCC--eEEEEEcCC
Q 039790 478 KSSAELRLEDAFFNQVVALNRAGLFLLAN-AKKN--AIYAIHMDY 519 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~dg~~LaSg-s~Dg--~I~iWdl~~ 519 (1395)
+...+. ..+.|+++|.+|+.. +.++ .++||++..
T Consensus 377 ~~~~v~--------~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 377 GNWSVD--------ELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SSSCEE--------EEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred cceEEE--------eEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 432221 234699999877554 4455 899999875
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.79 E-value=1.1e-16 Score=187.40 Aligned_cols=241 Identities=11% Similarity=0.033 Sum_probs=181.3
Q ss_pred CCEEEEEEecCCCEEEEEEc-------CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEE-EEEECCCcEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGLK-------LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLL-ASASVDGRFFIWNIT 288 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~-------DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~ 288 (1395)
..+.+++|+++|++|++++. ++.|.+||..++.......+...+.+++| +++++++ +++..++.|++||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATI-NNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEE-ETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEE-CCCCCEEEEEecCCCEEEEEeCC
Confidence 56788999999999988874 56899999998864333334456889999 8898854 555668999999999
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCC---------CccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCC
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDS---------VHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEP 357 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~---------~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~ 357 (1395)
+++ .+..+..+.. ....++|+++++.+++++. ++.+.+|+.... +.
T Consensus 120 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~-~~-------- 176 (353)
T 3vgz_A 120 TGE--------------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI-KL-------- 176 (353)
T ss_dssp TCC--------------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-EE--------
T ss_pred CCe--------------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-ce--------
Confidence 887 1222222211 1567999999998888874 456777765321 11
Q ss_pred CccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC----CCCCCeeEEEEeecCC
Q 039790 358 LKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP----YDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 358 ~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~----h~~~~V~sV~fs~~~~ 433 (1395)
...+..+...+.+++|+|+| ++|++++.++.|.+||+.+++.+..+.. +.. .+.+++|+
T Consensus 177 -----------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s---- 239 (353)
T 3vgz_A 177 -----------KTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEH-FFINISLD---- 239 (353)
T ss_dssp -----------EEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC-CEEEEEEE----
T ss_pred -----------EEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc-ccceEEEC----
Confidence 34444456668899999998 7888888999999999999998888764 443 68899999
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEE-EEEeCCCeE
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFL-LANAKKNAI 512 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I 512 (1395)
|+|++|++++..++.|.+||+.++ +.+..+..... ..++|+++|.+| +++..++.|
T Consensus 240 ~dg~~l~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~~-----------~~~~~s~dg~~l~v~~~~~~~v 296 (353)
T 3vgz_A 240 TARQRAFITDSKAAEVLVVDTRNG------------NILAKVAAPES-----------LAVLFNPARNEAYVTHRQAGKV 296 (353)
T ss_dssp TTTTEEEEEESSSSEEEEEETTTC------------CEEEEEECSSC-----------CCEEEETTTTEEEEEETTTTEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC------------cEEEEEEcCCC-----------ceEEECCCCCEEEEEECCCCeE
Confidence 999988887766799999999888 77777765332 138899999955 455579999
Q ss_pred EEEEcCCCC
Q 039790 513 YAIHMDYGP 521 (1395)
Q Consensus 513 ~iWdl~~g~ 521 (1395)
++||+.+++
T Consensus 297 ~~~d~~~~~ 305 (353)
T 3vgz_A 297 SVIDAKSYK 305 (353)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCe
Confidence 999987753
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=1.1e-17 Score=216.97 Aligned_cols=306 Identities=10% Similarity=0.040 Sum_probs=192.8
Q ss_pred CCCCcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCC---CEEEEE
Q 039790 147 HQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPG---LVLGRQ 223 (1395)
Q Consensus 147 ~~~~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~---~V~~va 223 (1395)
.....+.+++++..+++ +.||.|++|+... | .....+..|.. .|.+++
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~--g--------------------------~~~~~~~~~~~~~~~v~~~~ 67 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVET--N--------------------------TSTVLIEGKKIESLRAIRYE 67 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGG--C--------------------------CCEEEECTTTTTTTTCSEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCC--C--------------------------cEEEEeccccccccccceEE
Confidence 33444677888886665 7889999999441 1 11223333433 488999
Q ss_pred EecCCCEEEEEEcC---------CeEEEEECCCCceEEec---cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 224 IAVNRNYICYGLKL---------GNIRILNIITALRSLLR---GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 224 ~Spdg~~LasGs~D---------G~IrIWd~~~~~~~~l~---~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
|||||++|++++.+ +.|++||+.++....+. +|...|..++| ++||++|+.++. +.|++||+.+++
T Consensus 68 ~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~-SPdG~~la~~~~-~~i~~~~~~~g~ 145 (723)
T 1xfd_A 68 ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGW-GPKGQQLIFIFE-NNIYYCAHVGKQ 145 (723)
T ss_dssp ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCB-CSSTTCEEEEET-TEEEEESSSSSC
T ss_pred ECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEE-CCCCCEEEEEEC-CeEEEEECCCCc
Confidence 99999999999874 78889999998654444 45556999999 999999999986 799999999876
Q ss_pred CCCCCcccccceEEEEEEecCCCC------------------CccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCc----
Q 039790 292 DEEDKPQILGKIVVAIQILADGDS------------------VHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGK---- 348 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~------------------~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~---- 348 (1395)
. ..+...+.. .+..+.|+|++..|+.+..++ .+..|+......
T Consensus 146 ~--------------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 211 (723)
T 1xfd_A 146 A--------------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP 211 (723)
T ss_dssp C--------------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred e--------------EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCC
Confidence 2 222222222 236899999999888877653 222222110000
Q ss_pred ---cccccCCC----CCccCccccccc--eEEEcc------cCCCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCC
Q 039790 349 ---GERFSAEE----PLKCPVDELING--VQLVGK------HDGEITELSMCQWLTTRLASASL----DGTVKIWDDRKS 409 (1395)
Q Consensus 349 ---~~~~s~~~----~~~~~~~~~~~~--~~~l~~------h~~~V~slafspdg~~~LaSgs~----Dg~IrIWDl~sg 409 (1395)
...|...+ ...+.+|+...+ ...+.. |...+.+++|+||| ++|++.+. +..|++||+.++
T Consensus 212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g 290 (723)
T 1xfd_A 212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTG 290 (723)
T ss_dssp CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTC
T ss_pred cceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCC
Confidence 00000000 001222222222 133333 36679999999999 77766653 357999999999
Q ss_pred ceeEEecCCCCCCee----EEEEeecCCCCCcEEEEE-ecCCC------eEEEEEC-CCCCCCCCCCCcccccEEEEEec
Q 039790 410 TPLAVLRPYDGHPVN----CVTFLIGPHPQHIVLITG-GPLNR------ELKIWAS-AEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 410 ~~l~tl~~h~~~~V~----sV~fs~~~~pdg~~L~s~-Gs~Dg------~I~IWDl-~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
++...+..+....+. .++|+ |||++|+.. +..|+ .|.+||+ ..++ ..+...+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~----------~~~~~~l~~ 356 (723)
T 1xfd_A 291 VCTKKHEDESEAWLHRQNEEPVFS----KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS----------NDNIQSITS 356 (723)
T ss_dssp CEEEEEEEECSSCCCCCCCCCEEC----TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS----------SCCCCBSCC
T ss_pred cceEEEEeccCCEEeccCCCceEc----CCCCeEEEEEecccCCCcceeEEEEEeccCCCC----------ccceeEeec
Confidence 887776543322443 89999 999988765 44677 5666773 3330 001222221
Q ss_pred cCcccccccccccceEEEEeCCCCEEEEEeCC---CeEEEEEcCCC
Q 039790 478 KSSAELRLEDAFFNQVVALNRAGLFLLANAKK---NAIYAIHMDYG 520 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D---g~I~iWdl~~g 520 (1395)
.... +...++|++||.+|+..+.+ +.++||++..+
T Consensus 357 ~~~~--------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 357 GDWD--------VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SSSC--------EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCeE--------EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 1111 11236899999999776655 78999998753
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.78 E-value=3.3e-17 Score=213.01 Aligned_cols=327 Identities=11% Similarity=0.079 Sum_probs=208.1
Q ss_pred CCCEEEEEEecCCCEEEEEEc-CC-----eEEEEECCCCce-EEeccCCC------------------------CeEEEE
Q 039790 216 PGLVLGRQIAVNRNYICYGLK-LG-----NIRILNIITALR-SLLRGHTQ------------------------RVTDMA 264 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~-DG-----~IrIWd~~~~~~-~~l~~H~~------------------------~V~sla 264 (1395)
...|.+++|+|||++|++++. || .|++||+.++.. ..+..|.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 467899999999999999998 88 999999999854 34443332 388999
Q ss_pred EeeCCCCEEEEEECCCcEEEEECCCC---CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEE
Q 039790 265 FFAEDVHLLASASVDGRFFIWNITEG---PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKI 341 (1395)
Q Consensus 265 f~s~dg~~LaSgs~DgtV~IWdl~tg---~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~ 341 (1395)
| ++||++|++++. +.|++||+.++ ... .+..+...+..++|+|+|+.++.+. ++.+.+|
T Consensus 116 ~-SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---------------~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 116 W-SPDAQRLLFPLG-GELYLYDLKQEGKAAVR---------------QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp E-CTTSSEEEEEET-TEEEEEESSSCSTTSCC---------------BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred E-CCCCCEEEEEeC-CcEEEEECCCCCcceEE---------------EcccCCcccccccCCCCCCEEEEEe-CCcEEEE
Confidence 9 999999999987 89999999987 411 1223455678899999998766654 5678777
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEccc--------CCCeEEEEEecCCCcEEEEEeCCC--------------
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH--------DGEITELSMCQWLTTRLASASLDG-------------- 399 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h--------~~~V~slafspdg~~~LaSgs~Dg-------------- 399 (1395)
+... +....+...+. ...+.++ .+.+.+++|+||| ++|++++.|+
T Consensus 178 d~~~-g~~~~~~~~~~-----------~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~ 244 (741)
T 2ecf_A 178 DLAS-GRQMQLTADGS-----------TTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYAD 244 (741)
T ss_dssp ETTT-TEEEECCCCCC-----------SSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSS
T ss_pred ecCC-CCEEEeccCCc-----------cceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCC
Confidence 7643 21100000000 0000111 1125789999999 7888887765
Q ss_pred -------------------cEEEEeCCC-CceeEEec--CCCCCCeeEEEEeecCCCCCcEEEEEec----CCCeEEEEE
Q 039790 400 -------------------TVKIWDDRK-STPLAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGP----LNRELKIWA 453 (1395)
Q Consensus 400 -------------------~IrIWDl~s-g~~l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs----~Dg~I~IWD 453 (1395)
.|++||+.+ +++..... .|.. .+.+++| |||++|++++. .+..|++||
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~-----pDg~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDI-YLARVNW-----RDPQHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSE-EEEEEEE-----EETTEEEEEEEETTSSEEEEEEEE
T ss_pred cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcce-EEEEEEe-----CCCCEEEEEEecccCCeEEEEEEE
Confidence 899999998 87665543 3555 8999999 47888887652 357899999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeee
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAE 533 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~ 533 (1395)
+.++ ++...+..+...... ....+.|++||+++++++.|+.++||.++... . ...+..
T Consensus 319 ~~~g------------~~~~~~~~~~~~~~~-----~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---~--~~~l~~ 376 (741)
T 2ecf_A 319 LASN------------QQRVLAHETSPTWVP-----LHNSLRFLDDGSILWSSERTGFQHLYRIDSKG---K--AAALTH 376 (741)
T ss_dssp TTTC------------CEEEEEEEECSSCCC-----CCSCCEECTTSCEEEEECTTSSCEEEEECSSS---C--EEESCC
T ss_pred CCCC------------ceEEEEEcCCCCcCC-----cCCceEECCCCeEEEEecCCCccEEEEEcCCC---C--eeeeee
Confidence 9988 777766655421000 11247899999999999999988888876321 1 222222
Q ss_pred eeccc-cEEEEecCCCCcC---cCCCC--eEEEEEcCC-Cc-eeeec-ccceEEecCCCCC--eecccCC---CceEEEe
Q 039790 534 FTVTM-PILSLTGTTTDAS---PDGEH--IVQIYCVQT-QA-IQQYA-LDLSQCLPPPLEN--AELEKTD---SNATRAF 599 (1395)
Q Consensus 534 f~~~~-~ils~~~~~~d~~---~s~dg--~V~lWdv~t-~~-i~~~~-~~~~~cl~~s~d~--l~~~~sd---~~v~~iW 599 (1395)
..... .+..|+... ..+ .+.++ .++||++.. +. +..+. .....++.+++|+ +++..++ ...+.+|
T Consensus 377 ~~~~v~~~~~~s~dg-~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 377 GNWSVDELLAVDEKA-GLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp SSSCEEEEEEEETTT-TEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred cceEEEeEeEEeCCC-CEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 11111 111233322 111 12233 889998865 33 33322 2233456677765 4433322 2345677
Q ss_pred ecC
Q 039790 600 DVA 602 (1395)
Q Consensus 600 D~~ 602 (1395)
|..
T Consensus 456 ~~~ 458 (741)
T 2ecf_A 456 RAN 458 (741)
T ss_dssp ETT
T ss_pred EcC
Confidence 764
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.77 E-value=7.2e-17 Score=187.70 Aligned_cols=235 Identities=11% Similarity=0.084 Sum_probs=163.1
Q ss_pred EEecCCCE-EEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCCCCCCCccc
Q 039790 223 QIAVNRNY-ICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASV-DGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 223 a~Spdg~~-LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
.|..++++ +++++.++.|++||..++. ...+..+...+ +++| ++++++|++++. ++.|++||+.+++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~-s~dg~~l~~~~~~~~~i~~~d~~~~~~------- 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAI-TSDCSNVVVTSDFCQTLVQIETQLEPP------- 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEE-CSSSCEEEEEESTTCEEEEEECSSSSC-------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEE-cCCCCEEEEEeCCCCeEEEEECCCCce-------
Confidence 35555555 6677889999999999885 34555555666 9999 899986666665 89999999998761
Q ss_pred ccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 300 LGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
.......+.....+++|+|++..+++...++ .+.+|+... +.. +..+. +.
T Consensus 75 ------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~-~~~-------------------~~~~~-~~ 127 (331)
T 3u4y_A 75 ------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK-NKF-------------------ISTIP-IP 127 (331)
T ss_dssp ------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT-TEE-------------------EEEEE-CC
T ss_pred ------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC-CCe-------------------EEEEE-CC
Confidence 0223333444444599999999888433332 677776532 211 23333 34
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCcee-----EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 377 GEITELSMCQWLTTRLASASLDGT-VKIWDDRKSTPL-----AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~-IrIWDl~sg~~l-----~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
....+++|+|+|..+++++..++. |++||+.....+ ..+. +.. .+..++|+ |+|++|++++..++.|+
T Consensus 128 ~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~s----pdg~~l~v~~~~~~~v~ 201 (331)
T 3u4y_A 128 YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS-GGT-RPFNITFT----PDGNFAFVANLIGNSIG 201 (331)
T ss_dssp TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC-SSS-SEEEEEEC----TTSSEEEEEETTTTEEE
T ss_pred CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc-CCC-CccceEEC----CCCCEEEEEeCCCCeEE
Confidence 567999999999546666677788 999998764333 2232 333 68999999 99998877776799999
Q ss_pred EEECCCCCCCCCCCCcccccE---EEEEeccCcccccccccccceEEEEeCCCCEEEEE-eCCCeEEEEEcCCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKC---TQTLELKSSAELRLEDAFFNQVVALNRAGLFLLAN-AKKNAIYAIHMDYGP 521 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~---l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSg-s~Dg~I~iWdl~~g~ 521 (1395)
+||+.++ +. +..+...... ..++|++||++|+.+ ..++.|++||+.+++
T Consensus 202 v~d~~~~------------~~~~~~~~~~~~~~~----------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 202 ILETQNP------------ENITLLNAVGTNNLP----------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp EEECSST------------TSCEEEEEEECSSCC----------CCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred EEECCCC------------cccceeeeccCCCCC----------ceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 9999887 55 6666543211 248999999966554 467889999998753
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.77 E-value=2.7e-17 Score=213.17 Aligned_cols=241 Identities=15% Similarity=0.139 Sum_probs=170.8
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCC---CeEEEEEeeCCCCEEEEEECC---------CcEEE
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQ---RVTDMAFFAEDVHLLASASVD---------GRFFI 284 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~---~V~slaf~s~dg~~LaSgs~D---------gtV~I 284 (1395)
.+.+++|++||+++++ +.||.|++||+.++. ...+.+|.. .|.+++| ++||++|++++.+ +.|++
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~-SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI-SPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEE-CTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEE-CCCCCEEEEEecCccceeecceeeEEE
Confidence 3567889999998876 789999999999985 455566654 4999999 9999999999875 78889
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
||+.+++. ..+.....+...+..++|+|+|..++.++. +.+++|+... +..
T Consensus 96 ~d~~~~~~------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~-g~~--------------- 146 (723)
T 1xfd_A 96 SKIPHGDP------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG-KQA--------------- 146 (723)
T ss_dssp EESSSCCC------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS-SCC---------------
T ss_pred EECCCCce------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC-Cce---------------
Confidence 99998862 011111233445778999999987776654 6777776543 211
Q ss_pred cccceEEEcccCC------------------CeEEEEEecCCCcEEEEEeCCC---------------------------
Q 039790 365 LINGVQLVGKHDG------------------EITELSMCQWLTTRLASASLDG--------------------------- 399 (1395)
Q Consensus 365 ~~~~~~~l~~h~~------------------~V~slafspdg~~~LaSgs~Dg--------------------------- 399 (1395)
..+...+.. .+.+++|+||| ++|++++.|+
T Consensus 147 ----~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 147 ----IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (723)
T ss_dssp ----EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred ----EEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence 122222222 23789999999 7888887653
Q ss_pred -------cEEEEeCCCCceeEEecCC------CCCCeeEEEEeecCCCCCcEEEEEec---CCCeEEEEECCCCCCCCCC
Q 039790 400 -------TVKIWDDRKSTPLAVLRPY------DGHPVNCVTFLIGPHPQHIVLITGGP---LNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 400 -------~IrIWDl~sg~~l~tl~~h------~~~~V~sV~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl~tg~~~~~~ 463 (1395)
.|++||+.++++...+..+ .. .+.+++|+ |||++|++... .+..|++||+.++
T Consensus 222 G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~-~~~~~~~S----pDg~~l~~~~~~~~~~~~i~~~d~~~g------ 290 (723)
T 1xfd_A 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY-YITMVKWA----TSTKVAVTWLNRAQNVSILTLCDATTG------ 290 (723)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE-EEEEEEES----SSSEEEEEEEETTSCEEEEEEEETTTC------
T ss_pred CCCCCeeEEEEEECCCCceeEEeeCCccCCCccc-eeEEEEEe----CCCeEEEEEEcCCCCeEEEEEEeCCCC------
Confidence 7999999999877777765 34 78999999 99998877542 2368999999888
Q ss_pred CCcccccEEEEEeccC-cccccccccccceEEEEeCCCCEEEE--EeCCC------eEEEEE
Q 039790 464 SDIESWKCTQTLELKS-SAELRLEDAFFNQVVALNRAGLFLLA--NAKKN------AIYAIH 516 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~-~~i~~~~~~~~~~~l~~S~dg~~LaS--gs~Dg------~I~iWd 516 (1395)
++...+..+. ..+.. ....+.|++||++|+. +..++ .|++||
T Consensus 291 ------~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 291 ------VCTKKHEDESEAWLHR-----QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ------CEEEEEEEECSSCCCC-----CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred ------cceEEEEeccCCEEec-----cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 7766665432 11110 0124789999997664 45666 466676
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.77 E-value=6.3e-17 Score=209.33 Aligned_cols=255 Identities=12% Similarity=0.106 Sum_probs=170.2
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC-----CC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE-----GP 291 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t-----g~ 291 (1395)
..|.+++|+|| ++++++. ++.|++||+.++....+..|...+.+++| ++||++|+++ .|+.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~-SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDF-SPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEE-CTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcC-CCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56899999999 7777664 59999999999987777778888999999 9999999985 679999999998 65
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC---------------------------------CeE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG---------------------------------NRI 338 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~---------------------------------~~i 338 (1395)
...............+.....+...+..+.|+|++..|++++.+ ..+
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 21110000000000000000111124789999999988887732 233
Q ss_pred EEEEcCCCCccccccCCCCCccCccccccceEEE--cccCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCCce
Q 039790 339 LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV--GKHDGEITELSMCQWLTTRLASASLDG-----TVKIWDDRKSTP 411 (1395)
Q Consensus 339 i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l--~~h~~~V~slafspdg~~~LaSgs~Dg-----~IrIWDl~sg~~ 411 (1395)
.+|+... +.. .... ..|...+.+++|+||| ++|++++.|+ .|++||+.+++.
T Consensus 238 ~~~d~~~-~~~-------------------~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~ 296 (706)
T 2z3z_A 238 GIYHLAT-GKT-------------------VYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF 296 (706)
T ss_dssp EEEETTT-TEE-------------------EECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred EEEECCC-Cce-------------------EeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce
Confidence 3333321 110 1111 2467789999999999 7888888776 899999999944
Q ss_pred eEEec-C-CCC--CCeeEEEEeecCCC--CCcEEEEEecCCCeEEEEECC-CCCCCCCCCCcccccEEEEEeccCccccc
Q 039790 412 LAVLR-P-YDG--HPVNCVTFLIGPHP--QHIVLITGGPLNRELKIWASA-EEEGWLLPSDIESWKCTQTLELKSSAELR 484 (1395)
Q Consensus 412 l~tl~-~-h~~--~~V~sV~fs~~~~p--dg~~L~s~Gs~Dg~I~IWDl~-tg~~~~~~~~~~~~~~l~tl~~h~~~i~~ 484 (1395)
+..+. . +.. ..+.+++|+ | ||++|+++. .|+.++||++. ++ ..+..+..+...+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~s----p~~dg~~l~~~~-~~g~~~l~~~~~~~------------~~~~~l~~~~~~v-- 357 (706)
T 2z3z_A 297 VRTLFVETDKHYVEPLHPLTFL----PGSNNQFIWQSR-RDGWNHLYLYDTTG------------RLIRQVTKGEWEV-- 357 (706)
T ss_dssp EEEEEEEECSSCCCCCSCCEEC----TTCSSEEEEEEC-TTSSCEEEEEETTS------------CEEEECCCSSSCE--
T ss_pred eeEEEEccCCCeECccCCceee----cCCCCEEEEEEc-cCCccEEEEEECCC------------CEEEecCCCCeEE--
Confidence 44332 2 221 024789999 9 999887755 89999999886 44 5566665443221
Q ss_pred ccccccceEEEEeCCCCEEEEEeC-CC----eEEEEEcCCCC
Q 039790 485 LEDAFFNQVVALNRAGLFLLANAK-KN----AIYAIHMDYGP 521 (1395)
Q Consensus 485 ~~~~~~~~~l~~S~dg~~LaSgs~-Dg----~I~iWdl~~g~ 521 (1395)
...++|+++|..|+.++. ++ .|+.|++..+.
T Consensus 358 ------~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 358 ------TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ------EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred ------EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 123789999987766554 44 67777776643
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.76 E-value=2.5e-16 Score=183.02 Aligned_cols=287 Identities=11% Similarity=0.114 Sum_probs=180.6
Q ss_pred EEEEEEcCCeEEEEECC-CCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECC-CcEEEEECC--CCCCCCCCcccccce
Q 039790 230 YICYGLKLGNIRILNII-TAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVD-GRFFIWNIT--EGPDEEDKPQILGKI 303 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~-~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~D-gtV~IWdl~--tg~~~~~~~~~~~~~ 303 (1395)
++++++.|+.|++||+. ++. ......|...+.+++| ++++++|++++.+ +.|++|++. ++.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~v~~~~~~~~~~~------------ 73 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVV-SPDKRYLYVGVRPEFRVLAYRIAPDDGA------------ 73 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEE-CTTSSEEEEEETTTTEEEEEEECTTTCC------------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEE-CCCCCEEEEeecCCCeEEEEEecCCCCc------------
Confidence 34444779999999996 342 2333457788999999 8999999888887 999999998 443
Q ss_pred EEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEE
Q 039790 304 VVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITEL 382 (1395)
Q Consensus 304 i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sl 382 (1395)
...+..+..+. .+..++|+|++..+++++. ++.+.+|+.. .+.. ......+. ....+.++
T Consensus 74 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~----------------~~~~~~~~-~~~~~~~~ 134 (343)
T 1ri6_A 74 LTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLP----------------VGVVDVVE-GLDGCHSA 134 (343)
T ss_dssp EEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEE----------------EEEEEEEC-CCTTBCCC
T ss_pred eeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCcc----------------cccccccc-CCCCceEE
Confidence 11222233223 6789999999998888887 4556666653 1110 01123333 33468999
Q ss_pred EEecCCCcEEEEEe-CCCcEEEEeCCC-CceeE----EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 383 SMCQWLTTRLASAS-LDGTVKIWDDRK-STPLA----VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 383 afspdg~~~LaSgs-~Dg~IrIWDl~s-g~~l~----tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+|+|+| ++|++++ .|+.|++||+.+ ++... .+..+.+..+.+++|+ |+|++|++++..++.|++||+..
T Consensus 135 ~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 135 NISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH----PNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp EECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC----TTSSEEEEEETTTTEEEEEESSC
T ss_pred EECCCC-CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC----CCCCEEEEEeCCCCEEEEEEecC
Confidence 999998 6666666 899999999987 65432 3333333478999999 99998877776899999999964
Q ss_pred CCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEE-EEeCCCeEEEEEcCCCCCCCCcceeeeeeee
Q 039790 457 EEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLL-ANAKKNAIYAIHMDYGPNPASTRMDYIAEFT 535 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~La-Sgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~ 535 (1395)
.. .....+..+....... ........++|+++|.+|+ ++..++.|++|++.... .....+..+.
T Consensus 210 ~~--------g~~~~~~~~~~~~~~~---~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~----~~~~~~~~~~ 274 (343)
T 1ri6_A 210 PH--------GNIECVQTLDMMPENF---SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG----SVLSKEGFQP 274 (343)
T ss_dssp TT--------SCCEEEEEEECSCTTC---CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS----CCEEEEEEEE
T ss_pred CC--------CcEEEEeeccccCccc---cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC----CceEEeeeec
Confidence 21 1112233333111100 0011223589999998776 55589999999997311 1122333332
Q ss_pred ccc--cEEEEecCCCCcC--cC-CCCeEEEEEc--CCCcee
Q 039790 536 VTM--PILSLTGTTTDAS--PD-GEHIVQIYCV--QTQAIQ 569 (1395)
Q Consensus 536 ~~~--~ils~~~~~~d~~--~s-~dg~V~lWdv--~t~~i~ 569 (1395)
... ..+.|+... ..+ .+ .++.|.+|++ .++.+.
T Consensus 275 ~~~~~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 275 TETQPRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp CSSSCCCEEECTTS-SEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CCCccceEEECCCC-CEEEEecCCCCeEEEEEEcCCCceee
Confidence 221 123343322 212 22 5688999954 466543
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.76 E-value=3.6e-17 Score=185.02 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=164.9
Q ss_pred EEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC-CCCCCCCcccccceEEEEEEecC
Q 039790 234 GLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE-GPDEEDKPQILGKIVVAIQILAD 312 (1395)
Q Consensus 234 Gs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t-g~~~~~~~~~~~~~i~~l~~~~~ 312 (1395)
++.|+.|++||+.++....+..|...|.+++| ++++++|++++ ++.|++||+.+ ++. ..+...
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~-spdg~~l~~~~-~~~i~~~d~~~~~~~--------------~~~~~~ 81 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNW-SPDGKYLLLNS-EGLLYRLSLAGDPSP--------------EKVDTG 81 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEEEEE-CTTSSEEEEEE-TTEEEEEESSSCCSC--------------EECCCT
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEeeEE-CCCCCEEEEEc-CCeEEEEeCCCCCCc--------------eEeccc
Confidence 46789999999999988788889999999999 99999999987 78999999998 662 122222
Q ss_pred -CCCCccEEEEeCCCCeEEEEEeC----CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 313 -GDSVHPRVCWHPHKQEILMLAIG----NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 313 -~~~~v~~v~~sp~~~~lla~g~~----~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
+...+.+++|+|++..+++++.. ..+..++... +. ...+..+ ..+.+++|+|+
T Consensus 82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~-~~--------------------~~~~~~~-~~~~~~~~spd 139 (297)
T 2ojh_A 82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG-GT--------------------PRLMTKN-LPSYWHGWSPD 139 (297)
T ss_dssp TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC-CC--------------------CEECCSS-SSEEEEEECTT
T ss_pred cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC-Cc--------------------eEEeecC-CCccceEECCC
Confidence 34667889999999988887732 3444443321 11 2233323 34899999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCC-CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC-CCCCCCCCCC
Q 039790 388 LTTRLASASLDGTVKIWDDRK-STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA-EEEGWLLPSD 465 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~s-g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~-tg~~~~~~~~ 465 (1395)
+..++++++.|+.++||++.. +.....+..|.. .+.+++|+ |+|++|++++..|+.++||++. .+
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s----~dg~~l~~~~~~~~~~~i~~~~~~~-------- 206 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG-RNDGPDYS----PDGRWIYFNSSRTGQMQIWRVRVDG-------- 206 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS-CEEEEEEC----TTSSEEEEEECTTSSCEEEEEETTS--------
T ss_pred CCEEEEEECCCCceEEEEEECCCCcceEcccCCC-ccccceEC----CCCCEEEEEecCCCCccEEEECCCC--------
Confidence 943444888999999998642 334566667766 89999999 9999988877569999999986 33
Q ss_pred cccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC-----------CeEEEEEcCCCC
Q 039790 466 IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK-----------NAIYAIHMDYGP 521 (1395)
Q Consensus 466 ~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D-----------g~I~iWdl~~g~ 521 (1395)
..+..+..+... ...+.|+++|.+|++++.+ +.|++||+..++
T Consensus 207 ----~~~~~~~~~~~~---------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 207 ----SSVERITDSAYG---------DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp ----SCEEECCCCSEE---------EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred ----CCcEEEecCCcc---------cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 344455444322 2358999999999888765 569999987653
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.76 E-value=2.6e-16 Score=184.77 Aligned_cols=252 Identities=10% Similarity=0.063 Sum_probs=169.9
Q ss_pred CCCCEEEEEEecCCCEEEEEEc---CCeEEEEECCCCce---EEeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEEEEC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLK---LGNIRILNIITALR---SLLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFIWNI 287 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~---DG~IrIWd~~~~~~---~~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~IWdl 287 (1395)
+...+.+++|+|||+ |++++. ++.|++||+.++.. ..+..|...+..++| +++|++|++++ .+++|++|++
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~-spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV-DEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE-ETTTTEEEEEETTTTEEEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE-CCCCCEEEEEeCCCCEEEEEEe
Confidence 345667899999999 555544 68999999987743 344557888999999 99999888888 7899999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecC---------CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCC
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILAD---------GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEP 357 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~---------~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~ 357 (1395)
..... ...+..... ....+..++|+|++. +++++. ++.+.+|+....+..
T Consensus 116 ~~~g~-----------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~-------- 175 (347)
T 3hfq_A 116 AADGA-----------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQL-------- 175 (347)
T ss_dssp CTTSC-----------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCE--------
T ss_pred CCCCC-----------eeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcE--------
Confidence 64220 111121111 122466799999998 777666 455777766422211
Q ss_pred CccCccccccceEEEcc-cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--Cce--eEEecCCCC-----CCeeEEE
Q 039790 358 LKCPVDELINGVQLVGK-HDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--STP--LAVLRPYDG-----HPVNCVT 427 (1395)
Q Consensus 358 ~~~~~~~~~~~~~~l~~-h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--g~~--l~tl~~h~~-----~~V~sV~ 427 (1395)
.....+.. ....+..++|+|||..+++++..++.|++||+.. ++. +..+..... ..+..++
T Consensus 176 ---------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 176 ---------SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp ---------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred ---------EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 00111122 2346788999999933555567789999999874 542 333333221 2588999
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|+ |||++|++++..++.|.+||+... .....+..+..+...+ ..++|++||++|++++
T Consensus 247 ~s----pdG~~l~v~~~~~~~v~v~~~~~~---------g~~~~~~~~~~~~~~~---------~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 247 LS----HDGHFLYVSNRGYNTLAVFAVTAD---------GHLTLIQQISTEGDFP---------RDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EC----TTSCEEEEEEETTTEEEEEEECGG---------GCEEEEEEEECSSSCC---------CEEEECTTSSEEEEEE
T ss_pred EC----CCCCEEEEEeCCCCEEEEEEECCC---------CcEEEeEEEecCCCCc---------CeEEECCCCCEEEEEE
Confidence 99 999988766657999999999743 1225556665544322 2589999999887776
Q ss_pred C-CCeEEEEEcCC
Q 039790 508 K-KNAIYAIHMDY 519 (1395)
Q Consensus 508 ~-Dg~I~iWdl~~ 519 (1395)
. ++.|.+|+++.
T Consensus 305 ~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 305 QNTDNATLYARDL 317 (347)
T ss_dssp TTTTEEEEEEECT
T ss_pred cCCCcEEEEEEeC
Confidence 5 58999997653
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.76 E-value=1.8e-16 Score=183.84 Aligned_cols=265 Identities=11% Similarity=0.026 Sum_probs=182.1
Q ss_pred eEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeee-CCCC-CEEEEEEecCCCEEEE-EEc
Q 039790 160 STVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYI-SDPG-LVLGRQIAVNRNYICY-GLK 236 (1395)
Q Consensus 160 ~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~-~h~~-~V~~va~Spdg~~Las-Gs~ 236 (1395)
.|++++.++.|++||.. .|+. +..+. ++.. .+.+++|+++|+++++ +..
T Consensus 3 ~~v~~~~~~~v~~~d~~--~~~~--------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 54 (337)
T 1pby_B 3 YILAPARPDKLVVIDTE--KMAV--------------------------DKVITIADAGPTPMVPMVAPGGRIAYATVNK 54 (337)
T ss_dssp EEEEEETTTEEEEEETT--TTEE--------------------------EEEEECTTCTTCCCCEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCeEEEEECC--CCcE--------------------------EEEEEcCCCCCCccceEEcCCCCEEEEEeCC
Confidence 57888999999999943 1111 11222 1111 3677899999987654 456
Q ss_pred CCeEEEEECCCCce-EEec-cC----CCCeEEEEEeeCCCCEEEEEE------------CCCcEEEEECCCCCCCCCCcc
Q 039790 237 LGNIRILNIITALR-SLLR-GH----TQRVTDMAFFAEDVHLLASAS------------VDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 237 DG~IrIWd~~~~~~-~~l~-~H----~~~V~slaf~s~dg~~LaSgs------------~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
++.|++||+.++.. ..+. ++ ...+.+++| ++++++|++++ .++.|++||+.+++
T Consensus 55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------- 126 (337)
T 1pby_B 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL-SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS------- 126 (337)
T ss_dssp TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------
T ss_pred CCeEEEEECCCCCeEeeEEcCCcccccccccceEE-CCCCCEEEEEecccccccccccccCceEEEEECCCCc-------
Confidence 78999999998753 3333 22 236788999 89999988886 57999999998765
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
.+..+.. ...+..++|+|++..++++ ++.+.+|+...... ...+..+. .
T Consensus 127 -------~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~--------------------~~~~~~~~-~ 175 (337)
T 1pby_B 127 -------RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL--------------------VEDKPIQS-W 175 (337)
T ss_dssp -------EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE--------------------EEEECSTT-T
T ss_pred -------EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE--------------------eeeeeccc-c
Confidence 1222222 3446788999999887777 67788887643211 12222221 0
Q ss_pred eEEEEEecCCCcEEEEEeCCC-----------------------cEEEEeCCCCcee-EEecCCCCCCeeEEEEeecCCC
Q 039790 379 ITELSMCQWLTTRLASASLDG-----------------------TVKIWDDRKSTPL-AVLRPYDGHPVNCVTFLIGPHP 434 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg-----------------------~IrIWDl~sg~~l-~tl~~h~~~~V~sV~fs~~~~p 434 (1395)
...+.|+|++..+++++..++ .|.+||+.+++.. ..+..+.. .+.+++|+ |
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s----~ 250 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVN----P 250 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEEC----T
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC-ceeeEEEC----C
Confidence 012367888743333333333 4789999998764 23445554 78899999 9
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEE
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYA 514 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~i 514 (1395)
||++|+++ ++.|++||+.++ +.+..+...... ..++|+++|.+|++++.++.|++
T Consensus 251 dg~~l~~~---~~~v~~~d~~~~------------~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~~~~i~v 305 (337)
T 1pby_B 251 AKTRAFGA---YNVLESFDLEKN------------ASIKRVPLPHSY----------YSVNVSTDGSTVWLGGALGDLAA 305 (337)
T ss_dssp TSSEEEEE---ESEEEEEETTTT------------EEEEEEECSSCC----------CEEEECTTSCEEEEESBSSEEEE
T ss_pred CCCEEEEe---CCeEEEEECCCC------------cCcceecCCCce----------eeEEECCCCCEEEEEcCCCcEEE
Confidence 99999885 699999999887 777777644321 25899999999999999999999
Q ss_pred EEcCCCC
Q 039790 515 IHMDYGP 521 (1395)
Q Consensus 515 Wdl~~g~ 521 (1395)
||+.+++
T Consensus 306 ~d~~~~~ 312 (337)
T 1pby_B 306 YDAETLE 312 (337)
T ss_dssp EETTTCC
T ss_pred EECcCCc
Confidence 9998764
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.75 E-value=1.9e-16 Score=204.77 Aligned_cols=330 Identities=8% Similarity=0.036 Sum_probs=200.5
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCce--EEeccCC-----------------CCeEEEEEeeCCCCEEEEEECC
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALR--SLLRGHT-----------------QRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~--~~l~~H~-----------------~~V~slaf~s~dg~~LaSgs~D 279 (1395)
+..+.|. |+.+++++.|| | +||+.++.. ..+..|. ..|.+++| ++| .+++.+. |
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~-spd-~~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD-AGR-GLVVLFT-Q 100 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEE-TTT-TEEEEEE-T
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEE-CCC-CeEEEEE-C
Confidence 3346677 66778888888 8 999999876 6665554 46999999 888 5555553 5
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCC----CccccccCC
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRV----GKGERFSAE 355 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~----~~~~~~s~~ 355 (1395)
++|++||+.+++ ...+ ..+...+..++|+|++..++. +.++.+.+|+.... +........
T Consensus 101 ~~i~~~d~~~~~--------------~~~l-~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~ 164 (706)
T 2z3z_A 101 GGLVGFDMLARK--------------VTYL-FDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTID 164 (706)
T ss_dssp TEEEEEETTTTE--------------EEEE-ECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSC
T ss_pred CEEEEEECCCCc--------------eEEc-cCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccC
Confidence 999999998765 2222 234556778999999987776 57788888876541 211100000
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe---------------------------------CCCcEE
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS---------------------------------LDGTVK 402 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs---------------------------------~Dg~Ir 402 (1395)
+.. ....+......+...+.+++|+||| ++|++++ .++.|+
T Consensus 165 ~~~-----~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 165 GTE-----TLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp CBT-----TEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred CCC-----CeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 000 0000000011122336899999999 7888887 446799
Q ss_pred EEeCCCCceeEEec--CCCCCCeeEEEEeecCCCCCcEEEEEecCCC-----eEEEEECCCCCCCCCCCCcccccEEEEE
Q 039790 403 IWDDRKSTPLAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGGPLNR-----ELKIWASAEEEGWLLPSDIESWKCTQTL 475 (1395)
Q Consensus 403 IWDl~sg~~l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg-----~I~IWDl~tg~~~~~~~~~~~~~~l~tl 475 (1395)
+||+.+++...... .|.. .+.+++|+ |||++|++++ .|+ .|++||+.++ +....+
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~-~~~~~~~s----pdg~~l~~~~-~~~~~~~~~v~~~d~~~g------------~~~~~~ 300 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEK-FLTNLSWS----PDENILYVAE-VNRAQNECKVNAYDAETG------------RFVRTL 300 (706)
T ss_dssp EEETTTTEEEECCCCSCTTC-EEEEEEEC----TTSSEEEEEE-ECTTSCEEEEEEEETTTC------------CEEEEE
T ss_pred EEECCCCceEeeccCCCCce-eEeeEEEE----CCCCEEEEEE-eCCCCCeeEEEEEECCCC------------ceeeEE
Confidence 99999987655443 4554 79999999 9999998866 565 9999999876 444444
Q ss_pred eccCcccccccccccceEEEEeC--CCCEEEEEeCCCeEEEEEcCC-CCCCCCcceeeeeeeeccc-cEEEEecCCCCcC
Q 039790 476 ELKSSAELRLEDAFFNQVVALNR--AGLFLLANAKKNAIYAIHMDY-GPNPASTRMDYIAEFTVTM-PILSLTGTTTDAS 551 (1395)
Q Consensus 476 ~~h~~~i~~~~~~~~~~~l~~S~--dg~~LaSgs~Dg~I~iWdl~~-g~~~~~~~~~~i~~f~~~~-~ils~~~~~~d~~ 551 (1395)
........ ......+.|++ ||.+|+++..|+.++||.++. +. .+..+....... ..+.|+... ..+
T Consensus 301 ~~~~~~~~----~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~-----~~~~l~~~~~~v~~~~~~spdg-~~l 370 (706)
T 2z3z_A 301 FVETDKHY----VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR-----LIRQVTKGEWEVTNFAGFDPKG-TRL 370 (706)
T ss_dssp EEEECSSC----CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC-----EEEECCCSSSCEEEEEEECTTS-SEE
T ss_pred EEccCCCe----ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC-----EEEecCCCCeEEEeeeEEcCCC-CEE
Confidence 32211100 00112478999 999999999999999998863 21 222222211111 112333222 111
Q ss_pred ---cCCC----CeEEEEEcCCCceeeec-ccceEEecCCCCC--eecccCC---CceEEEeecCCCC
Q 039790 552 ---PDGE----HIVQIYCVQTQAIQQYA-LDLSQCLPPPLEN--AELEKTD---SNATRAFDVANPD 605 (1395)
Q Consensus 552 ---~s~d----g~V~lWdv~t~~i~~~~-~~~~~cl~~s~d~--l~~~~sd---~~v~~iWD~~tg~ 605 (1395)
...+ ..|+.|++.++.+.... .....++.+++|+ +++..++ ...+.+||+.+++
T Consensus 371 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 371 YFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 1222 37888888887654432 2234566677765 4444322 2567899998887
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.74 E-value=1e-15 Score=179.08 Aligned_cols=230 Identities=10% Similarity=0.109 Sum_probs=170.2
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCc-eEEeccCCCC---------eEEEEEeeCCCCEEEEEE--CCCcEE
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIITAL-RSLLRGHTQR---------VTDMAFFAEDVHLLASAS--VDGRFF 283 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~-~~~l~~H~~~---------V~slaf~s~dg~~LaSgs--~DgtV~ 283 (1395)
..+.+++|+++|++++++ ..++.|.+||..++. +..+..+... +.+++| ++++++++.++ .++.|+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA-DDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE-ETTTTEEEEEEESSSCEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE-CCCCCEEEEEecCCCceEE
Confidence 346678999999966655 557999999999885 3455444322 788999 89998777766 478999
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+||+.+++ .+..+..+...+..++|++++..++++..++.+.+|+......
T Consensus 168 ~~d~~~~~--------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~--------------- 218 (353)
T 3vgz_A 168 VVDGGNIK--------------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI--------------- 218 (353)
T ss_dssp EEETTTTE--------------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE---------------
T ss_pred EEcCCCCc--------------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE---------------
Confidence 99999876 2333333445577899999999999888888888887643211
Q ss_pred ccccceEEEc----ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 364 ELINGVQLVG----KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 364 ~~~~~~~~l~----~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
...+. ++...+.+++|+|+|..++++...++.|.+||..+++.+..+.... ...++|+ |+|+++
T Consensus 219 -----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s----~dg~~l 286 (353)
T 3vgz_A 219 -----LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFN----PARNEA 286 (353)
T ss_dssp -----EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEE----TTTTEE
T ss_pred -----EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEEC----CCCCEE
Confidence 11221 3566788999999994344455556999999999999988887543 3679999 999987
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
++++..++.|.+||+.++ +.+..+...... ..++|++||++|+.+..++
T Consensus 287 ~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSY------------KVVKTFDTPTHP----------NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEETTTTEEEEEETTTT------------EEEEEEECCSEE----------EEEEECTTSCEEEEEEECC
T ss_pred EEEECCCCeEEEEECCCC------------eEEEEEecCCCC----------CeEEEcCCCCEEEEEEccc
Confidence 777767999999999888 777777654321 3589999999766665543
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.73 E-value=4.5e-16 Score=210.72 Aligned_cols=241 Identities=12% Similarity=-0.019 Sum_probs=184.6
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECC--CCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNII--TALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~--~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
...+.+|...+.++.|+++ .++++++.||.++||++. ++....+..|. .+..++| +++|++|+++. ++.|++||
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~-SpDG~~la~~~-~~~i~~~d 271 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHL-NTDGRRILFSK-GGSIYIFN 271 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEE-EESSSCEEEEE-TTEEEEEC
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeE-cCCCCEEEEEe-CCEEEEec
Confidence 3455789999999999988 667777888999999865 44566677666 4677899 89999988874 89999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecC-----------CCCCccEEEEe-CCCCeEEEEEeCCeEEEEEcCCCCccccccC
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILAD-----------GDSVHPRVCWH-PHKQEILMLAIGNRILKIDSNRVGKGERFSA 354 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~-----------~~~~v~~v~~s-p~~~~lla~g~~~~ii~~d~~~~~~~~~~s~ 354 (1395)
+.... +..+.. +...+..++|+ |++..+++++ .+.+..|+... +.
T Consensus 272 ~~~~~---------------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~-~~------ 328 (1045)
T 1k32_A 272 PDTEK---------------IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG-TY------ 328 (1045)
T ss_dssp TTTCC---------------EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS-SB------
T ss_pred CCceE---------------eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC-Cc------
Confidence 94332 111111 23468899999 9998777666 66666665432 11
Q ss_pred CCCCccCccccccceEEEcccCC-CeEEEEEecCCCcEEEEEeCCCcEE-EEeCCCCceeEEecCCCCCCeeEEEEeecC
Q 039790 355 EEPLKCPVDELINGVQLVGKHDG-EITELSMCQWLTTRLASASLDGTVK-IWDDRKSTPLAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~h~~-~V~slafspdg~~~LaSgs~Dg~Ir-IWDl~sg~~l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
...+..|.. .+.+++|+ || ..|++++.++.|. +||+..+... .+.+|.. .+.+++|+
T Consensus 329 --------------~~~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~-~~~~~~~S--- 387 (1045)
T 1k32_A 329 --------------VLKVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAE-KFEENLG-NVFAMGVD--- 387 (1045)
T ss_dssp --------------EEECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEE-ECCCCCC-SEEEEEEC---
T ss_pred --------------eEEccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCce-EecCCcc-ceeeeEEC---
Confidence 233456777 89999999 88 7888988888898 9999877654 4447766 89999999
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCC--
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKN-- 510 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg-- 510 (1395)
|||++|++++ .++.|++||+.++ ++...+..|...+. .++|+|||++|++++.++
T Consensus 388 -pDG~~la~~~-~~~~v~~~d~~tg------------~~~~~~~~~~~~v~---------~~~~SpDG~~la~~~~~~~~ 444 (1045)
T 1k32_A 388 -RNGKFAVVAN-DRFEIMTVDLETG------------KPTVIERSREAMIT---------DFTISDNSRFIAYGFPLKHG 444 (1045)
T ss_dssp -TTSSEEEEEE-TTSEEEEEETTTC------------CEEEEEECSSSCCC---------CEEECTTSCEEEEEEEECSS
T ss_pred -CCCCEEEEEC-CCCeEEEEECCCC------------ceEEeccCCCCCcc---------ceEECCCCCeEEEEecCccc
Confidence 9999999876 8999999999988 77777666655433 389999999998887654
Q ss_pred --------eEEEEEcCCC
Q 039790 511 --------AIYAIHMDYG 520 (1395)
Q Consensus 511 --------~I~iWdl~~g 520 (1395)
.|++||+..+
T Consensus 445 ~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 445 ETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp TTCSCCEEEEEEEETTTT
T ss_pred cccCCCCCeEEEEECCCC
Confidence 8999999875
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=1.8e-16 Score=193.50 Aligned_cols=210 Identities=12% Similarity=0.057 Sum_probs=153.8
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCC-----------ceE-----EeccCCCCeEEEEEeeCCCCEEE----EE
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITA-----------LRS-----LLRGHTQRVTDMAFFAEDVHLLA----SA 276 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-----------~~~-----~l~~H~~~V~slaf~s~dg~~La----Sg 276 (1395)
..+..++|++++.+|++|+.|| |+||+...- ... ....|.+.|++++| ++++++|+ +|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL-SCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE-CTTSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE-cCCCCEEEEEEecc
Confidence 4578899999999999999988 899875321 111 11236678999999 89999999 88
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+.|++|+|||+.++..... .....+..+....+|...+.+++|+|++ ..+++++.++.+.+||.... ..
T Consensus 115 s~d~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~------ 184 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAK---QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VK------ 184 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTC---SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EE------
T ss_pred CCCceEEEEEccccccCCc---CCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cc------
Confidence 8999999999976410000 0011233456666788899999999984 44555556666777766432 10
Q ss_pred CCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC------CCeeEEEEe
Q 039790 356 EPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG------HPVNCVTFL 429 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~------~~V~sV~fs 429 (1395)
.....+|...|++++|+|+| ++|++|+.||+|++||++ +.....+..|.. ..|.+++|+
T Consensus 185 -------------~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 185 -------------VCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp -------------EEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred -------------eeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 33445688999999999998 899999999999999998 776777655421 178999999
Q ss_pred ecCCCCCcEEEEEecCCCe------EEEEECCCC
Q 039790 430 IGPHPQHIVLITGGPLNRE------LKIWASAEE 457 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~------I~IWDl~tg 457 (1395)
+++.++++.+..||. +++||+++.
T Consensus 250 ----~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 250 ----GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ----ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ----cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 888888776655643 899999865
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.71 E-value=2e-14 Score=169.76 Aligned_cols=264 Identities=10% Similarity=0.025 Sum_probs=168.2
Q ss_pred CCCCEEEEEEecCCCEEEEEEcC----CeEEEEECCC--CceE---EeccCCCCeEEEEEeeCCCCEEEEEE-CCCcEEE
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKL----GNIRILNIIT--ALRS---LLRGHTQRVTDMAFFAEDVHLLASAS-VDGRFFI 284 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~D----G~IrIWd~~~--~~~~---~l~~H~~~V~slaf~s~dg~~LaSgs-~DgtV~I 284 (1395)
+...+..++|+|||++|++++.+ |.|++|++.. +.+. .+..+......++| ++++|++++ .+++|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 45667778999999999999886 8999999876 4332 33345566777877 778777776 5889999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecC-------CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCC
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILAD-------GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~-------~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~ 356 (1395)
|++......... ...+...+. ....+.+++|+|++.++++++. ++.+.+|+........ ...
T Consensus 125 ~~~~~~g~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~---~~~ 194 (361)
T 3scy_A 125 FPIGQDGALLPA-------SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD---NKE 194 (361)
T ss_dssp EEBCTTSCBCSC-------SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT---TCC
T ss_pred EEeCCCCcCccc-------ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc---ccc
Confidence 999764421111 111111111 1122467999999998888876 4556666543221000 000
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCce--eEEec---CCCCCCeeEEEEee
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDRKSTP--LAVLR---PYDGHPVNCVTFLI 430 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~sg~~--l~tl~---~h~~~~V~sV~fs~ 430 (1395)
.+. ...........+...+..++|+||| ++|++++ .++.|++||+.++.. +..+. .+.. .+..++|+
T Consensus 195 ~l~----~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~-~~~~i~~s- 267 (361)
T 3scy_A 195 KFL----TKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ-GSGDIHLS- 267 (361)
T ss_dssp CCE----EEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC-CEEEEEEC-
T ss_pred cee----ecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC-CcccEEEC-
Confidence 000 0000011222345678899999999 6666555 689999999987754 33333 2223 57899999
Q ss_pred cCCCCCcEEEEEecC-CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe-C
Q 039790 431 GPHPQHIVLITGGPL-NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA-K 508 (1395)
Q Consensus 431 ~~~pdg~~L~s~Gs~-Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs-~ 508 (1395)
|||++|++++.. ++.|.||++.... .....+..+.. ... ...++|++||++|++++ .
T Consensus 268 ---pdg~~l~v~~~~~~~~i~v~~~~~~~--------g~~~~~~~~~~-g~~---------~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 268 ---PDGKYLYASNRLKADGVAIFKVDETN--------GTLTKVGYQLT-GIH---------PRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp ---TTSSEEEEEECSSSCEEEEEEECTTT--------CCEEEEEEEEC-SSC---------CCEEEECTTSCEEEEEETT
T ss_pred ---CCCCEEEEECCCCCCEEEEEEEcCCC--------CcEEEeeEecC-CCC---------CceEEECCCCCEEEEEECC
Confidence 999999887755 6899999996220 11234444443 211 12589999999887776 6
Q ss_pred CCeEEEEEcCC
Q 039790 509 KNAIYAIHMDY 519 (1395)
Q Consensus 509 Dg~I~iWdl~~ 519 (1395)
++.|.+|+++.
T Consensus 327 ~~~v~v~~~d~ 337 (361)
T 3scy_A 327 TNVIQIFERDQ 337 (361)
T ss_dssp TTEEEEEEECT
T ss_pred CCCEEEEEEEC
Confidence 79999987763
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.70 E-value=1.5e-15 Score=177.15 Aligned_cols=236 Identities=10% Similarity=0.008 Sum_probs=168.5
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCC-CCeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCc
Q 039790 221 GRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHT-QRVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~-~~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
++++++++.++++++.++.|++||..++. +..+..+. ..+..++| +++++++ +++..++.|++||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~~~v~~~~~~~i~~~d~~t~~------ 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMM-APDNRTAYVLNNHYGDIYGIDLDTCK------ 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEE-CTTSSEEEEEETTTTEEEEEETTTTE------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEE-CCCCCEEEEEeCCCCcEEEEeCCCCc------
Confidence 45678889999999999999999999885 33444332 26889999 8998865 555678999999998876
Q ss_pred ccccceEEEEEEecCC----CCCccEEEEeCCCCeEEEEEeC------------CeEEEEEcCCCCccccccCCCCCccC
Q 039790 298 QILGKIVVAIQILADG----DSVHPRVCWHPHKQEILMLAIG------------NRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~----~~~v~~v~~sp~~~~lla~g~~------------~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
.+..+.. ... ...+..++|+|++..+++++.+ +.+.+|+......
T Consensus 77 -----~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------- 137 (349)
T 1jmx_B 77 -----NTFHANL-SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE------------- 137 (349)
T ss_dssp -----EEEEEES-CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-------------
T ss_pred -----EEEEEEc-ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-------------
Confidence 1111111 111 2236789999999988888765 7777777643110
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC----------------------
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD---------------------- 419 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~---------------------- 419 (1395)
...+..+. +...+.+++|+|+| ++ +.++ +.|++||+.+++.+..+..+.
T Consensus 138 ----~~~~~~~~-~~~~~~~~~~s~dg-~l-~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (349)
T 1jmx_B 138 ----AKPVRTFP-MPRQVYLMRAADDG-SL-YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 208 (349)
T ss_dssp ----BCCSEEEE-CCSSCCCEEECTTS-CE-EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred ----cceeeecc-CCCcccceeECCCC-cE-EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcce
Confidence 01123333 34468899999999 54 4443 449999999998887775432
Q ss_pred ---------------------------------------------CCCeeEEEEeecCCC-CCcEEEEEecCCCeEEEEE
Q 039790 420 ---------------------------------------------GHPVNCVTFLIGPHP-QHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 420 ---------------------------------------------~~~V~sV~fs~~~~p-dg~~L~s~Gs~Dg~I~IWD 453 (1395)
+..+.+++|+ | ||++|+++ ++.|++||
T Consensus 209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----p~dg~~l~~~---~~~v~~~d 281 (349)
T 1jmx_B 209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS----PKDPNQIYGV---LNRLAKYD 281 (349)
T ss_dssp EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC----SSCTTEEEEE---ESEEEEEE
T ss_pred eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEec----CCCCCEEEEE---cCeEEEEE
Confidence 0034566777 8 99998875 78999999
Q ss_pred CCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 454 SAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 454 l~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+.++ +.+..+...... ..++|+++|.+|++++.++.|++||+.++
T Consensus 282 ~~~~------------~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 282 LKQR------------KLIKAANLDHTY----------YCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp TTTT------------EEEEEEECSSCC----------CEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred CccC------------eEEEEEcCCCCc----------cceEECCCCCEEEEecCCCeEEEEecccc
Confidence 9888 777777643321 25899999998888888999999999774
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.70 E-value=3.4e-16 Score=197.92 Aligned_cols=240 Identities=10% Similarity=-0.004 Sum_probs=173.1
Q ss_pred CCCEEEEEEecCCCEEEEEEc-CCeEEEEECCCCceEEeccCC-CCeEEEEEeeCCCCEEEEEEC---CCcEEEEECCC-
Q 039790 216 PGLVLGRQIAVNRNYICYGLK-LGNIRILNIITALRSLLRGHT-QRVTDMAFFAEDVHLLASASV---DGRFFIWNITE- 289 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~-DG~IrIWd~~~~~~~~l~~H~-~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl~t- 289 (1395)
...|++++|++||++||+++. ||+++||++.++....+..|. ..|..++| ++| +++++++. +...+||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~-spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHY-GVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECT-TCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccC-CCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999987 999999999888777777776 68999999 788 77887775 45566665543
Q ss_pred -CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCe-EEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 290 -GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQE-ILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 290 -g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~-lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
... ...+ .. ...+...+|+++++. +++++..+.+.+|+... +.
T Consensus 99 ~~g~-------------~~~l-~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g~------------------- 143 (582)
T 3o4h_A 99 RPGE-------------EQRL-EA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDG-GG------------------- 143 (582)
T ss_dssp STTC-------------CEEC-TT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEET-TE-------------------
T ss_pred CCCc-------------cccc-cC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccC-Cc-------------------
Confidence 210 0111 11 112336789999875 45566677777665422 21
Q ss_pred ceEEEcccCCCeEEEEEecCCCcEEEEEeCC----CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 368 GVQLVGKHDGEITELSMCQWLTTRLASASLD----GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafspdg~~~LaSgs~D----g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...+..+.. .+++|+||| ++|++++.| +.|++||+.+++.. .+..|.+ .+.+++|+ |||++|+++.
T Consensus 144 -~~~l~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~S----pDG~~l~~~~ 213 (582)
T 3o4h_A 144 -LRELARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASIS----PGMKVTAGLE 213 (582)
T ss_dssp -EEEEEEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEEC----TTSCEEEEEE
T ss_pred -EEEeecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceEC----CCCCEEEEcc
Confidence 222222333 889999999 899988877 78999999988754 6778877 89999999 9999999654
Q ss_pred cCCC--eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 444 PLNR--ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 444 s~Dg--~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.++ .|++||+.++ ++. .+..+...+.... .......+|++||.++++++.|+.+++|++
T Consensus 214 -~~~~~~i~~~d~~~~------------~~~-~~~~~~~~~~~~~-~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 214 -TAREARLVTVDPRDG------------SVE-DLELPSKDFSSYR-PTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp -CSSCEEEEEECTTTC------------CEE-ECCCSCSHHHHHC-CSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred -CCCeeEEEEEcCCCC------------cEE-EccCCCcChhhhh-hccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 788 8999999887 655 5555544332210 001112349999999999999999999999
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.70 E-value=1.1e-14 Score=170.83 Aligned_cols=287 Identities=13% Similarity=0.086 Sum_probs=176.9
Q ss_pred EEEEEEc----CCeEEEEECCC--CceE--EeccCCCCeEEEEEeeCCCCEEEEEEC---CCcEEEEECCCCCCCCCCcc
Q 039790 230 YICYGLK----LGNIRILNIIT--ALRS--LLRGHTQRVTDMAFFAEDVHLLASASV---DGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 230 ~LasGs~----DG~IrIWd~~~--~~~~--~l~~H~~~V~slaf~s~dg~~LaSgs~---DgtV~IWdl~tg~~~~~~~~ 298 (1395)
+|++|+. ++.|.+|+++. +... ....+...+..++| +++|+ |++++. ++.|++||+.++.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~-spdg~-l~~~~~~~~~~~v~~~~~~~g~------- 74 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLAL-SAKDC-LYSVDKEDDEGGIAAWQIDGQT------- 74 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEE-CTTCE-EEEEEEETTEEEEEEEEEETTE-------
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEE-ccCCe-EEEEEecCCCceEEEEEecCCc-------
Confidence 4455533 45677777654 5432 33456677889999 88998 555544 6899999997654
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc----
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG---- 373 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~---- 373 (1395)
...+.....+...+..++|+|++..+++++. ++.+.+|+....+... .+..+.
T Consensus 75 -----~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~-----------------~~~~~~~~~~ 132 (347)
T 3hfq_A 75 -----AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT-----------------LTDTVQHSGH 132 (347)
T ss_dssp -----EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE-----------------EEEEEECCCC
T ss_pred -----EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee-----------------ecceeecCCC
Confidence 1122222234556778999999998888884 5667777664322210 011111
Q ss_pred -----ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCcee--EEecCCCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 374 -----KHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-KSTPL--AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 374 -----~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~-sg~~l--~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
.+...+.+++|+|+| ++++++..++.|++||+. ++... ..+..+.+..+..++|+ |||++|++++..
T Consensus 133 ~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s----pdg~~l~v~~~~ 207 (347)
T 3hfq_A 133 GPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS----PDGQYAFLAGEL 207 (347)
T ss_dssp CSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC----TTSSEEEEEETT
T ss_pred CCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC----CCCCEEEEEeCC
Confidence 123458999999999 577777788999999998 55432 23333333368899999 999988887778
Q ss_pred CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEE-EEEeCCCeEEEEEcCCCCCCC
Q 039790 446 NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFL-LANAKKNAIYAIHMDYGPNPA 524 (1395)
Q Consensus 446 Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I~iWdl~~g~~~~ 524 (1395)
++.|++|++.... .....+..+....... ........++|++||++| +++..++.|++|++..+.
T Consensus 208 ~~~v~v~~~~~~~--------g~~~~~~~~~~~~~~~---~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g--- 273 (347)
T 3hfq_A 208 SSQIASLKYDTQT--------GAFTQLGIVKTIPADY---TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG--- 273 (347)
T ss_dssp TTEEEEEEEETTT--------TEEEEEEEEESSCTTC---CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG---
T ss_pred CCEEEEEEecCCC--------CceEEeeeeeecCCCC---CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC---
Confidence 9999999987520 1112333333322110 001123468999999977 566678999999996321
Q ss_pred Ccceeeeeeeecc---ccEEEEecCCCCcC--c-CCCCeEEEE--EcCCCcee
Q 039790 525 STRMDYIAEFTVT---MPILSLTGTTTDAS--P-DGEHIVQIY--CVQTQAIQ 569 (1395)
Q Consensus 525 ~~~~~~i~~f~~~---~~ils~~~~~~d~~--~-s~dg~V~lW--dv~t~~i~ 569 (1395)
.+..+..+... ...+.|+... ..+ . .+++.|.+| +..++++.
T Consensus 274 --~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 274 --HLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp --CEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred --cEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 22333333321 1223443332 212 2 345789999 55566654
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.70 E-value=1.8e-15 Score=175.27 Aligned_cols=228 Identities=10% Similarity=0.051 Sum_probs=156.3
Q ss_pred CEEEEEEcCCeEEEEECCCCceE-Eec-cCCC-CeEEEEEeeCCCCEE-EEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 229 NYICYGLKLGNIRILNIITALRS-LLR-GHTQ-RVTDMAFFAEDVHLL-ASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~-~l~-~H~~-~V~slaf~s~dg~~L-aSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
++|++++.++.|++||..++... .+. ++.. .+.+++| +++++++ ++++.++.|++||+.+++ .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~v~~~~~~~v~~~d~~~~~-----------~~ 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMV-APGGRIAYATVNKSESLVKIDLVTGE-----------TL 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEE-CTTSSEEEEEETTTTEEEEEETTTCC-----------EE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEE-cCCCCEEEEEeCCCCeEEEEECCCCC-----------eE
Confidence 47899999999999999988543 333 2222 5889999 8998765 566668899999999876 11
Q ss_pred EEEEEecC--CCCCccEEEEeCCCCeEEEEE------------eCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 305 VAIQILAD--GDSVHPRVCWHPHKQEILMLA------------IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 305 ~~l~~~~~--~~~~v~~v~~sp~~~~lla~g------------~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
..+..... +...+..++|++++..++++. .++.+.+|+... ++. ..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~-------------------~~ 129 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSR-------------------RK 129 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEE-------------------EE
T ss_pred eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcE-------------------EE
Confidence 12211110 112466899999998888775 357777777632 110 22
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC---
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--- 447 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--- 447 (1395)
.+. ....+.+++|+|+| ++|+++ ++.|++||+.+++.+..+..+.. ...+.|+ |+|.+|+.++..++
T Consensus 130 ~~~-~~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~s----~dg~~l~~~~~~~~~~~ 199 (337)
T 1pby_B 130 AFE-APRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW--EAETYAQ----PDVLAVWNQHESSGVMA 199 (337)
T ss_dssp EEE-CCSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEEECSTTT--TTTTBCC----CBCCCCCCCCTTTTEEE
T ss_pred EEe-CCCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeeeeecccc--CCCceeC----CCccEEeeeccCCCcee
Confidence 332 24567889999998 666666 68999999999998888875541 2234787 88887766553444
Q ss_pred --------------------eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 448 --------------------ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 448 --------------------~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
.|.+||+.++ ++. .+...... .....++|++||.+|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------------~~~-~~~~~~~~-------~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 200 TPFYTARKDIDPADPTAYRTGLLTMDLETG------------EMA-MREVRIMD-------VFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp EEEEEEBTTSCTTSGGGEEEEEEEEETTTC------------CEE-EEEEEECS-------SCEEEEEECTTSSEEEEE-
T ss_pred eeeeccccccccccccccccceEEEeCCCC------------Cce-EeecCCCC-------CceeeEEECCCCCEEEEe-
Confidence 4689999887 543 22221110 112258999999999888
Q ss_pred CCCeEEEEEcCCC
Q 039790 508 KKNAIYAIHMDYG 520 (1395)
Q Consensus 508 ~Dg~I~iWdl~~g 520 (1395)
++.|++||+.++
T Consensus 259 -~~~v~~~d~~~~ 270 (337)
T 1pby_B 259 -YNVLESFDLEKN 270 (337)
T ss_dssp -ESEEEEEETTTT
T ss_pred -CCeEEEEECCCC
Confidence 799999998764
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.69 E-value=9.7e-16 Score=198.68 Aligned_cols=301 Identities=8% Similarity=0.009 Sum_probs=177.9
Q ss_pred cccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCC---CCEEEEEEecC
Q 039790 151 SPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP---GLVLGRQIAVN 227 (1395)
Q Consensus 151 ~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~---~~V~~va~Spd 227 (1395)
.+.+.+++. ++..+.|+.|++|+... |+ ....+.+|. ..|.+++||||
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~--g~--------------------------~~~~~~~~~~~~~~~~~~~~SpD 70 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIET--GQ--------------------------SYTILSNRTMKSVNASNYGLSPD 70 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSS--CC--------------------------EEEEECHHHHHTTTCSEEEECTT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCC--Cc--------------------------EEEEEccccccccceeeEEECCC
Confidence 456677774 44445689999999542 11 111111121 13778999999
Q ss_pred CCEEEEEEc---------CCeEEEEECCCCce---EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 228 RNYICYGLK---------LGNIRILNIITALR---SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 228 g~~LasGs~---------DG~IrIWd~~~~~~---~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
|++|++++. ++.|++||+.++.. ..+ ...+.+++| +|||++|+.+. |+.|++||+.++.....
T Consensus 71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~-SPDG~~la~~~-~~~i~~~~~~~g~~~~l 145 (719)
T 1z68_A 71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCW-SPVGSKLAYVY-QNNIYLKQRPGDPPFQI 145 (719)
T ss_dssp SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEE-CSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred CCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceE-CCCCCEEEEEE-CCeEEEEeCCCCCcEEE
Confidence 999999876 78999999999866 444 356899999 99999999986 78999999998763111
Q ss_pred CcccccceEEEEEEecCCC---------CCccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCcc-------ccccC----
Q 039790 296 KPQILGKIVVAIQILADGD---------SVHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGKG-------ERFSA---- 354 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~---------~~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~~-------~~~s~---- 354 (1395)
........ ++.++. .....++|+|+|..|+.++.++ .+..|........ ..|..
T Consensus 146 ~~~~~~~~-----v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~ 220 (719)
T 1z68_A 146 TFNGRENK-----IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK 220 (719)
T ss_dssp CCCCBTTT-----EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred ecCCCcCC-----eEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence 00000000 001111 1124799999999888877653 1111100000000 00000
Q ss_pred CCCCccCccccccce----------EEEcccCCCeEEEEEecCCCcEEEEEeCC----CcEEEEe----CCCCceeEEe-
Q 039790 355 EEPLKCPVDELINGV----------QLVGKHDGEITELSMCQWLTTRLASASLD----GTVKIWD----DRKSTPLAVL- 415 (1395)
Q Consensus 355 ~~~~~~~~~~~~~~~----------~~l~~h~~~V~slafspdg~~~LaSgs~D----g~IrIWD----l~sg~~l~tl- 415 (1395)
.....+.+|+...+. ..+.+|...+.+++|+||+ +++++.... ..|.+|| +.++++...+
T Consensus 221 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~ 299 (719)
T 1z68_A 221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE 299 (719)
T ss_dssp CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence 000011112221111 1123588889999999997 777775433 2488999 8888766555
Q ss_pred ---cCCCCCCee-----EEEEeecCCCCCcEEEE-EecCCC--eEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc
Q 039790 416 ---RPYDGHPVN-----CVTFLIGPHPQHIVLIT-GGPLNR--ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR 484 (1395)
Q Consensus 416 ---~~h~~~~V~-----sV~fs~~~~pdg~~L~s-~Gs~Dg--~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~ 484 (1395)
.+|.+ ++. .+.|+ |||+.|+. .+..++ .|.+||+.++ + ...+..+...+
T Consensus 300 ~~~~~~~~-~~~~~~~~~~~~s----pdg~~l~~~~~~~~g~~~l~~~~~~~~------------~-~~~lt~~~~~v-- 359 (719)
T 1z68_A 300 HIEESRTG-WAGGFFVSTPVFS----YDAISYYKIFSDKDGYKHIHYIKDTVE------------N-AIQITSGKWEA-- 359 (719)
T ss_dssp EEEECSSS-CSSSSSCCCCEEC----TTSSCEEEEEECTTSCEEEEEESSCST------------T-CEECSCSSSCE--
T ss_pred cccccCCc-eEccccCCccEEC----CCCCeEEEEEEccCCceEEEEEECCCC------------c-eEecccCceEE--
Confidence 46766 777 89999 99996654 233555 5667777655 3 23333222111
Q ss_pred ccccccceEEEEeCCCCEEEEEeCC-----CeEEEEEcCC
Q 039790 485 LEDAFFNQVVALNRAGLFLLANAKK-----NAIYAIHMDY 519 (1395)
Q Consensus 485 ~~~~~~~~~l~~S~dg~~LaSgs~D-----g~I~iWdl~~ 519 (1395)
..+.++ +|..|+..+.+ +.+++|.+..
T Consensus 360 -------~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 360 -------INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp -------EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred -------EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 123444 77766666654 7888888865
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.67 E-value=5.8e-16 Score=200.77 Aligned_cols=333 Identities=13% Similarity=0.066 Sum_probs=194.3
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceEEe-ccCCC---CeEEEEEeeCCCCEEEEEEC---------CCcEEEEEC
Q 039790 221 GRQIAVNRNYICYGLKLGNIRILNIITALRSLL-RGHTQ---RVTDMAFFAEDVHLLASASV---------DGRFFIWNI 287 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l-~~H~~---~V~slaf~s~dg~~LaSgs~---------DgtV~IWdl 287 (1395)
++.|++||+++++ +.||.|++||+.++....+ .+|.. .|.+++| ++||++|++++. |++|++||+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGL-SPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEE-CTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEE-CCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 6789999965555 4699999999999865444 44433 4999999 999999999887 789999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcccccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELIN 367 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~ 367 (1395)
.+++..... . ....+..++|+|+|..|+.+ .++.+.+|+... +....+...+ .
T Consensus 98 ~~g~~~~~~-----------~----l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~-g~~~~l~~~~----------~ 150 (719)
T 1z68_A 98 SNGEFVRGN-----------E----LPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPG-DPPFQITFNG----------R 150 (719)
T ss_dssp TTTEECCSS-----------C----CCSSBCCEEECSSTTCEEEE-ETTEEEEESSTT-SCCEECCCCC----------B
T ss_pred CCCccccce-----------e----cCcccccceECCCCCEEEEE-ECCeEEEEeCCC-CCcEEEecCC----------C
Confidence 987621000 0 01346789999999877666 567777776533 2211110000 0
Q ss_pred ceEEEcccCCCe---------EEEEEecCCCcEEEEEeCCC----------------------------------cEEEE
Q 039790 368 GVQLVGKHDGEI---------TELSMCQWLTTRLASASLDG----------------------------------TVKIW 404 (1395)
Q Consensus 368 ~~~~l~~h~~~V---------~slafspdg~~~LaSgs~Dg----------------------------------~IrIW 404 (1395)
...++.||...| .+++||||| ++|++++.|. .|++|
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 011223343333 589999999 8898887652 78999
Q ss_pred eCCCCcee---E-----EecCCCCCCeeEEEEeecCCCCCcEEEEEecC-C--CeEEEEE----CCCCCCCCCCCCcccc
Q 039790 405 DDRKSTPL---A-----VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL-N--RELKIWA----SAEEEGWLLPSDIESW 469 (1395)
Q Consensus 405 Dl~sg~~l---~-----tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~-D--g~I~IWD----l~tg~~~~~~~~~~~~ 469 (1395)
|+.+++.+ . .+.+|.. .+.+++|+ ||++++++.... + ..|.+|| +.++
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S----pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g------------ 292 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDY-YFSWLTWV----TDERVCLQWLKRVQNVSVLSICDFREDWQTW------------ 292 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCE-EEEEEEES----SSSEEEEEEEESSTTEEEEEEEEECSSSSSE------------
T ss_pred ECCCCCccceeEccCCccCCCCcc-eEEEeEEe----CCCeEEEEEeccccCeEEEEEEcccCCCCCC------------
Confidence 99988753 1 2345776 89999999 998777664311 2 2488899 7665
Q ss_pred cEEEEE----eccCcccccccccccceEEEEeCCCCEEEE--EeCCC--eEEEEEcCCCCCCCCcceeeeee--eecccc
Q 039790 470 KCTQTL----ELKSSAELRLEDAFFNQVVALNRAGLFLLA--NAKKN--AIYAIHMDYGPNPASTRMDYIAE--FTVTMP 539 (1395)
Q Consensus 470 ~~l~tl----~~h~~~i~~~~~~~~~~~l~~S~dg~~LaS--gs~Dg--~I~iWdl~~g~~~~~~~~~~i~~--f~~~~~ 539 (1395)
++...+ ..+...+.. .....+.|++||..|+. +..++ .|++|++..+.. ..+.. +.....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~------~~lt~~~~~v~~~ 362 (719)
T 1z68_A 293 DCPKTQEHIEESRTGWAGG----FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA------IQITSGKWEAINI 362 (719)
T ss_dssp ECCGGGEEEEECSSSCSSS----SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC------EECSCSSSCEEEE
T ss_pred ceEEEEecccccCCceEcc----ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce------EecccCceEEEEE
Confidence 333322 233322210 00014789999995543 44555 466666655431 11211 111111
Q ss_pred EEEEecCCCCcCc----CCCCeEEEEEcCC--Cc--eeeecc------cceEEecCCCCC--eecccCC--CceEEEeec
Q 039790 540 ILSLTGTTTDASP----DGEHIVQIYCVQT--QA--IQQYAL------DLSQCLPPPLEN--AELEKTD--SNATRAFDV 601 (1395)
Q Consensus 540 ils~~~~~~d~~~----s~dg~V~lWdv~t--~~--i~~~~~------~~~~cl~~s~d~--l~~~~sd--~~v~~iWD~ 601 (1395)
..+ ++..+-... .+++.++||.+.. +. ...... .......+++++ ++...+. .-.+.+||+
T Consensus 363 ~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 363 FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp EEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred EEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 111 221100001 1246788887764 42 222211 112233344443 4433222 135678999
Q ss_pred CCCCcceeec
Q 039790 602 ANPDGSASLE 611 (1395)
Q Consensus 602 ~tg~~~~~l~ 611 (1395)
.+|++...++
T Consensus 442 ~~g~~~~~~~ 451 (719)
T 1z68_A 442 RTDQEIKILE 451 (719)
T ss_dssp SSCCEEEEEE
T ss_pred CCCCEEEEee
Confidence 9998776665
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.67 E-value=4e-15 Score=181.52 Aligned_cols=200 Identities=13% Similarity=0.140 Sum_probs=144.6
Q ss_pred CCCCCEEEEEEecCCCEEE----EEEcCCeEEEEECCCC------------ceEEeccCCCCeEEEEEeeCC-CCEEEEE
Q 039790 214 SDPGLVLGRQIAVNRNYIC----YGLKLGNIRILNIITA------------LRSLLRGHTQRVTDMAFFAED-VHLLASA 276 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~La----sGs~DG~IrIWd~~~~------------~~~~l~~H~~~V~slaf~s~d-g~~LaSg 276 (1395)
.+...|.+++|+++|++|+ +|+.|+.|+|||+.++ ....+.+|...|.+|+| +++ +.+|++|
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKW-NPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEE-CSSCTTEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEE-CCCCCCEEEEE
Confidence 3567899999999999999 7888999999998654 14567789999999999 665 8999999
Q ss_pred ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC
Q 039790 277 SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 277 s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~ 356 (1395)
+.||+|+|||++++. .+.....|...+.+++|+|++..+++++.++.+.+|+.. +..
T Consensus 169 s~Dg~v~iwD~~~~~--------------~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~--~~~------- 225 (434)
T 2oit_A 169 LADGSIAVLQVTETV--------------KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT--LQE------- 225 (434)
T ss_dssp ETTSCEEEEEESSSE--------------EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT--CCE-------
T ss_pred ECCCeEEEEEcCCCc--------------ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC--Ccc-------
Confidence 999999999999764 222334467789999999999888888888888888764 111
Q ss_pred CCccCccccccceEEEc-------ccCCCeEEEEEecCCCcEEEE-EeCCCc------EEEEeCCCCc-----eeEEec-
Q 039790 357 PLKCPVDELINGVQLVG-------KHDGEITELSMCQWLTTRLAS-ASLDGT------VKIWDDRKST-----PLAVLR- 416 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~-------~h~~~V~slafspdg~~~LaS-gs~Dg~------IrIWDl~sg~-----~l~tl~- 416 (1395)
...+. .|...|.+++|++++ .++++ ++.||. +++||++... ....+.
T Consensus 226 ------------~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~ 292 (434)
T 2oit_A 226 ------------KKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFME 292 (434)
T ss_dssp ------------EEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCC
T ss_pred ------------cccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEeccc
Confidence 11111 244589999999987 55543 445543 8999998652 112221
Q ss_pred ------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 417 ------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 417 ------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
+... +-..+.+. ++.++++++++..+.|.|+...
T Consensus 293 ~~~~~~~~r~-~~~~~~~l----~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 293 PCYGSCTERQ-HHYYLSYI----EEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SSCCCCSSSC-CCEEEEEE----GGGTEEEEEETTCSBCEEEEEC
T ss_pred CCCCCCCCcC-cceeeehh----ccCCEEEEecCCCCceeEEEec
Confidence 1122 23344444 6778888877777778888754
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.66 E-value=3.3e-15 Score=188.82 Aligned_cols=230 Identities=11% Similarity=0.104 Sum_probs=157.5
Q ss_pred eeeCCC-CCEEEEEEecCCCEEEEEEc---CCeEEEEECCC---CceEEeccCCCCeEEEEEeeCCCC--EEEEEECCCc
Q 039790 211 KYISDP-GLVLGRQIAVNRNYICYGLK---LGNIRILNIIT---ALRSLLRGHTQRVTDMAFFAEDVH--LLASASVDGR 281 (1395)
Q Consensus 211 ~l~~h~-~~V~~va~Spdg~~LasGs~---DG~IrIWd~~~---~~~~~l~~H~~~V~slaf~s~dg~--~LaSgs~Dgt 281 (1395)
.+..|. ..+.++.|+|| +++++++. +...+||.+.. +....+..+. .+...+| +++++ ++++++. +.
T Consensus 58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~-s~dg~~~~~~s~~~-~~ 133 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSG-VDTGEAVVFTGATE-DR 133 (582)
T ss_dssp ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEE-EECSSCEEEEEECS-SC
T ss_pred eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-Cceeeee-CCCCCeEEEEecCC-CC
Confidence 344454 58899999999 77777765 45566665533 2222343332 2445677 66664 4444444 45
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC----CeEEEEEcCCCCccccccCCCC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG----NRILKIDSNRVGKGERFSAEEP 357 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~----~~ii~~d~~~~~~~~~~s~~~~ 357 (1395)
+.|||+.+++ ...+..... ..++|+|+|..++.++.+ ..+.+|+... +.
T Consensus 134 ~~l~d~~~g~--------------~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~--------- 186 (582)
T 3o4h_A 134 VALYALDGGG--------------LRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG--------- 186 (582)
T ss_dssp EEEEEEETTE--------------EEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC---------
T ss_pred ceEEEccCCc--------------EEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC---------
Confidence 5699998875 122222222 689999999988877765 4555565422 21
Q ss_pred CccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceeEEecCCCCCCeeEEE--------
Q 039790 358 LKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG--TVKIWDDRKSTPLAVLRPYDGHPVNCVT-------- 427 (1395)
Q Consensus 358 ~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg--~IrIWDl~sg~~l~tl~~h~~~~V~sV~-------- 427 (1395)
...+..|.+.+..++|+||| ++|+++..|+ .|++||+.++++. .+.+|.. .+..++
T Consensus 187 -----------~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 187 -----------LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSK-DFSSYRPTAITWLG 252 (582)
T ss_dssp -----------CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS-HHHHHCCSEEEEEE
T ss_pred -----------ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc-Chhhhhhcccccee
Confidence 34566788899999999999 7888888888 8999999999887 7788876 788888
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
|+ |||.+++++. .|++++||++ + +++.. .... ...++|+ +|.++++++
T Consensus 253 ~s----pdg~~~~~~~-~~g~~~l~~~--g------------~~~~~---~~~~---------v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 253 YL----PDGRLAVVAR-REGRSAVFID--G------------ERVEA---PQGN---------HGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp EC----TTSCEEEEEE-ETTEEEEEET--T------------EEECC---CSSE---------EEEEEEE-TTEEEEEEE
T ss_pred Ec----CCCcEEEEEE-cCCcEEEEEE--C------------Ceecc---CCCc---------eEEEEec-CCEEEEEEc
Confidence 99 9996666654 8999999999 6 44431 1111 1257888 999998888
Q ss_pred CCCe---EEEEEc
Q 039790 508 KKNA---IYAIHM 517 (1395)
Q Consensus 508 ~Dg~---I~iWdl 517 (1395)
.+.. |++|+.
T Consensus 301 ~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 301 SLSTPPRIVSLPS 313 (582)
T ss_dssp ETTEEEEEEEETT
T ss_pred CCCCCCeEEEEcC
Confidence 7754 566654
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.64 E-value=1.3e-14 Score=172.58 Aligned_cols=256 Identities=9% Similarity=0.049 Sum_probs=164.4
Q ss_pred cceeeeeCCCCCEEE-----EEEecCCCEEEEEEc-CC--eEEEEECCCCceEEe-ccCCCCeEEEEEeeCCCCEEEEEE
Q 039790 207 TPITKYISDPGLVLG-----RQIAVNRNYICYGLK-LG--NIRILNIITALRSLL-RGHTQRVTDMAFFAEDVHLLASAS 277 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~-----va~Spdg~~LasGs~-DG--~IrIWd~~~~~~~~l-~~H~~~V~slaf~s~dg~~LaSgs 277 (1395)
..+..+..|...+.. .+|+|||++|++++. +| .|.+||+.++....+ .+|...+..++| ++||++|+.++
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~-spdg~~l~~~~ 99 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFL-SPDDDALFYVK 99 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEE-CTTSSEEEEEE
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEE-cCCCCEEEEEe
Confidence 455666666665555 789999999999987 66 488889998865444 455556667889 99999999999
Q ss_pred CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEE--EeCCCCeEEEEEe---------------------
Q 039790 278 VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVC--WHPHKQEILMLAI--------------------- 334 (1395)
Q Consensus 278 ~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~--~sp~~~~lla~g~--------------------- 334 (1395)
.++.|++||+.+++ ...+...+...+.... +++++..++....
T Consensus 100 ~~~~l~~~d~~~g~--------------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 100 DGRNLMRVDLATLE--------------ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp TTTEEEEEETTTCC--------------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred CCCeEEEEECCCCc--------------ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 99999999999887 2222233333333333 4777776554321
Q ss_pred -CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec-CCCcEEEEEeCC------CcEEEEeC
Q 039790 335 -GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ-WLTTRLASASLD------GTVKIWDD 406 (1395)
Q Consensus 335 -~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp-dg~~~LaSgs~D------g~IrIWDl 406 (1395)
...+++|+... +. ...+..+...+..++|+| || .+|+.++.+ ..|.+||.
T Consensus 166 ~~~~l~~~d~~~-g~--------------------~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 166 PCCRLMRVDLKT-GE--------------------STVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp CCEEEEEEETTT-CC--------------------EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEET
T ss_pred CcceEEEEECCC-Cc--------------------eEEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeC
Confidence 12344444321 11 344445777899999999 88 777777653 37888887
Q ss_pred CCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEecCCC----eEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 407 RKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGPLNR----ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 407 ~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg----~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
..+. ...+..+.. ..+..+.|+ |||+.|+..+..++ .|++||+.+++ .+.+..+..+...
T Consensus 224 ~~~~-~~~l~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~~l~~~d~~~g~----------~~~l~~~~~~~~~ 288 (388)
T 3pe7_A 224 DGTN-MRKVKTHAEGESCTHEFWV----PDGSALVYVSYLKGSPDRFIYSADPETLE----------NRQLTSMPACSHL 288 (388)
T ss_dssp TSCC-CEESCCCCTTEEEEEEEEC----TTSSCEEEEEEETTCCCEEEEEECTTTCC----------EEEEEEECCEEEE
T ss_pred CCCc-eEEeeeCCCCcccccceEC----CCCCEEEEEecCCCCCcceEEEEecCCCc----------eEEEEcCCCceee
Confidence 6554 344444432 257889999 99998866543322 39999998871 0233333321100
Q ss_pred cccccccccceEEEEeCCCCEEEEE---------eCCCeEEEEEcCCC
Q 039790 482 ELRLEDAFFNQVVALNRAGLFLLAN---------AKKNAIYAIHMDYG 520 (1395)
Q Consensus 482 i~~~~~~~~~~~l~~S~dg~~LaSg---------s~Dg~I~iWdl~~g 520 (1395)
... .....|++||.+|+.. ..+..|++||+..+
T Consensus 289 ~~~------~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 289 MSN------YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEC------TTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred eec------CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 000 0114689999987754 45678999999875
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.64 E-value=3.7e-14 Score=168.42 Aligned_cols=247 Identities=9% Similarity=0.009 Sum_probs=163.7
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECC-CCceEEeccCC--CCeEEEEEeeCCCCE--EEEEE-------------C
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNII-TALRSLLRGHT--QRVTDMAFFAEDVHL--LASAS-------------V 278 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~-~~~~~~l~~H~--~~V~slaf~s~dg~~--LaSgs-------------~ 278 (1395)
..+..++|++||++|++++.+ .|.+||+. ++.+..+..|. +.+.+++| +++|++ +++++ .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDA-DTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCT-TSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEE-CCCCCEEEEEEecCCcceeccceeecC
Confidence 457789999999999999887 99999997 66543222221 34667889 899984 55553 6
Q ss_pred CCcEEEEECCC-CCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCC
Q 039790 279 DGRFFIWNITE-GPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 279 DgtV~IWdl~t-g~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
+|++++|++.. ++ ....+.... .+...+..++|+|+++.++++.. ++.+.+|+....++.
T Consensus 118 ~g~v~v~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~------ 180 (365)
T 1jof_A 118 AGYGNVFSVSETGK-----------LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV------ 180 (365)
T ss_dssp CCEEEEEEECTTCC-----------EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE------
T ss_pred CceEEEEccCCCCc-----------CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE------
Confidence 89999999974 43 222222222 24456778999999998877765 456777765321211
Q ss_pred CCCccCccccccceEEEc--ccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCC--CCcee---EEec---CC-CC-C-
Q 039790 356 EPLKCPVDELINGVQLVG--KHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDR--KSTPL---AVLR---PY-DG-H- 421 (1395)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~--~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~--sg~~l---~tl~---~h-~~-~- 421 (1395)
..+..+. .|...+..++|+||| ++|++++ .+++|.+|++. +|+.. ..+. .+ .+ .
T Consensus 181 -----------~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 248 (365)
T 1jof_A 181 -----------ELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP 248 (365)
T ss_dssp -----------EEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred -----------EEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence 0011222 246679999999999 6776666 47899999765 56543 2222 11 11 1
Q ss_pred ------CeeEEE-EeecCCCCCcEEEEEecCCC-----eEEEEECC-CCCCCCCCCCcccccEEE---EEeccCcccccc
Q 039790 422 ------PVNCVT-FLIGPHPQHIVLITGGPLNR-----ELKIWASA-EEEGWLLPSDIESWKCTQ---TLELKSSAELRL 485 (1395)
Q Consensus 422 ------~V~sV~-fs~~~~pdg~~L~s~Gs~Dg-----~I~IWDl~-tg~~~~~~~~~~~~~~l~---tl~~h~~~i~~~ 485 (1395)
.+..++ |+ |||++|++++..++ +|++|++. ++ +... .+..+....
T Consensus 249 ~~~~~~~~~~i~~~s----pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~~~~~--- 309 (365)
T 1jof_A 249 ETGKGLYRADVCALT----FSGKYMFASSRANKFELQGYIAGFKLRDCG------------SIEKQLFLSPTPTSGG--- 309 (365)
T ss_dssp TTSSBSEEEEEEEEC----TTSSEEEEEEEESSTTSCCEEEEEEECTTS------------CEEEEEEEEECSSCCT---
T ss_pred ccccccccccEEEEC----CCCCEEEEECCCCCCCCCCeEEEEEECCCC------------CEEEeeeeeecCCCCc---
Confidence 378999 99 99999887653333 89999996 44 4332 122222221
Q ss_pred cccccceEEEEeC---CCCEEEEEeC-CCeEEEEEcCC
Q 039790 486 EDAFFNQVVALNR---AGLFLLANAK-KNAIYAIHMDY 519 (1395)
Q Consensus 486 ~~~~~~~~l~~S~---dg~~LaSgs~-Dg~I~iWdl~~ 519 (1395)
..++|+| ||.+|++++. ++.|++|+++.
T Consensus 310 ------~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 310 ------HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ------TCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ------ccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 1378888 8999988876 48999999875
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.63 E-value=3.4e-14 Score=165.62 Aligned_cols=258 Identities=9% Similarity=0.015 Sum_probs=169.7
Q ss_pred CCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCC-CCEEEEEEecCCCEEEE
Q 039790 155 PPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP-GLVLGRQIAVNRNYICY 233 (1395)
Q Consensus 155 p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~-~~V~~va~Spdg~~Las 233 (1395)
......+++++.++.|++||.. .|+. +..+..+. ..+.+++|+++|+++++
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~--~~~~--------------------------~~~~~~~~~~~~~~~~~s~dg~~~~v 59 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVA--SDTV--------------------------YKSCVMPDKFGPGTAMMAPDNRTAYV 59 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETT--TTEE--------------------------EEEEECSSCCSSCEEEECTTSSEEEE
T ss_pred cCCCEEEEEeCCCCeEEEEECC--CCcE--------------------------EEEEecCCCCCCceeEECCCCCEEEE
Confidence 3445778889999999999943 1111 11222111 24568899999987654
Q ss_pred -EEcCCeEEEEECCCCce-EEecc-C-----CCCeEEEEEeeCCCCEEEEEECC------------CcEEEEECCCCCCC
Q 039790 234 -GLKLGNIRILNIITALR-SLLRG-H-----TQRVTDMAFFAEDVHLLASASVD------------GRFFIWNITEGPDE 293 (1395)
Q Consensus 234 -Gs~DG~IrIWd~~~~~~-~~l~~-H-----~~~V~slaf~s~dg~~LaSgs~D------------gtV~IWdl~tg~~~ 293 (1395)
+..++.|++||+.++.. ..+.. + ...+.+++| +++|++|++++.+ +.|++||+.+++..
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEE-CCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 45689999999998853 33432 2 234789999 8999999999866 89999999875411
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCC---CC-----ccCcccc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEE---PL-----KCPVDEL 365 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~---~~-----~~~~~~~ 365 (1395)
. .+..... ...+.+++|++++. ++++ ++.+.+|+.........+.... +. ....|..
T Consensus 139 ~-----------~~~~~~~-~~~~~~~~~s~dg~-l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (349)
T 1jmx_B 139 K-----------PVRTFPM-PRQVYLMRAADDGS-LYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH 203 (349)
T ss_dssp C-----------CSEEEEC-CSSCCCEEECTTSC-EEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred c-----------eeeeccC-CCcccceeECCCCc-EEEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecC
Confidence 1 1112222 23577899999998 6664 3347777654322111111110 00 0000000
Q ss_pred -------------------------------------ccc---eEEEcccCCCeEEEEEec-CCCcEEEEEeCCCcEEEE
Q 039790 366 -------------------------------------ING---VQLVGKHDGEITELSMCQ-WLTTRLASASLDGTVKIW 404 (1395)
Q Consensus 366 -------------------------------------~~~---~~~l~~h~~~V~slafsp-dg~~~LaSgs~Dg~IrIW 404 (1395)
..+ ...+..+...+.+++|+| ++ ++|+++ ++.|++|
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~ 280 (349)
T 1jmx_B 204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKY 280 (349)
T ss_dssp CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEE
T ss_pred CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEE
Confidence 000 111122445678899999 88 677777 8899999
Q ss_pred eCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc
Q 039790 405 DDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478 (1395)
Q Consensus 405 Dl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h 478 (1395)
|+.+++.+..+..+. .+.+++|+ ++|++|++++ .++.|++||+.++ +.+..+...
T Consensus 281 d~~~~~~~~~~~~~~--~~~~~~~s----~dg~~l~~~~-~~~~v~v~d~~~~------------~~~~~~~~~ 335 (349)
T 1jmx_B 281 DLKQRKLIKAANLDH--TYYCVAFD----KKGDKLYLGG-TFNDLAVFNPDTL------------EKVKNIKLP 335 (349)
T ss_dssp ETTTTEEEEEEECSS--CCCEEEEC----SSSSCEEEES-BSSEEEEEETTTT------------EEEEEEECS
T ss_pred ECccCeEEEEEcCCC--CccceEEC----CCCCEEEEec-CCCeEEEEecccc------------ceeeeeecC
Confidence 999999888887543 58899999 9999988865 8899999999888 888888765
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.62 E-value=6.5e-14 Score=182.51 Aligned_cols=256 Identities=14% Similarity=0.072 Sum_probs=165.1
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCC-----eEEEEEeeCCCCEEEEEECC---------CcE
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQR-----VTDMAFFAEDVHLLASASVD---------GRF 282 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~-----V~slaf~s~dg~~LaSgs~D---------gtV 282 (1395)
...++.|++||.+|+++ ||.|++||+.++. ...+.+|... ..+++| ++||++|+.++.+ +.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSI-SPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEE-CTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEE-CCCCCEEEEEECCeeeEEEccceEE
Confidence 34578899999999987 8999999999985 5566776643 245888 9999999999887 566
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
++||+.+++.. .+..+...+....|+|+|..|+.+ .++.|.+|+... +....+..++.
T Consensus 95 ~~~d~~~~~~~---------------~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~-~~~~~lt~~g~----- 152 (740)
T 4a5s_A 95 DIYDLNKRQLI---------------TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN-LPSYRITWTGK----- 152 (740)
T ss_dssp EEEETTTTEEC---------------CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT-SCCEECCSCCB-----
T ss_pred EEEECCCCcEE---------------EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCC-CceEEEcCCCC-----
Confidence 79999988621 123345567889999999987665 667777776533 22111111100
Q ss_pred cccccceEEEcccCCC---------eEEEEEecCCCcEEEEEeCCC----------------------------------
Q 039790 363 DELINGVQLVGKHDGE---------ITELSMCQWLTTRLASASLDG---------------------------------- 399 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~---------V~slafspdg~~~LaSgs~Dg---------------------------------- 399 (1395)
....+.++.+. ...+.||||| ++||.++.|.
T Consensus 153 -----~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~ 226 (740)
T 4a5s_A 153 -----EDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP 226 (740)
T ss_dssp -----TTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred -----ccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence 01122333322 2358999999 7888876432
Q ss_pred --cEEEEeCCC---Cc--eeEEec------CCCCCCeeEEEEeecCCCCCcEEEEEec---CCCeEEEEECCCCCCCCCC
Q 039790 400 --TVKIWDDRK---ST--PLAVLR------PYDGHPVNCVTFLIGPHPQHIVLITGGP---LNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 400 --~IrIWDl~s---g~--~l~tl~------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl~tg~~~~~~ 463 (1395)
+|++||+.+ +. ....+. +|.. .+..++|+ |||+.++.... .+..|++||+.+++.
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ws----pdg~~~~~~~~r~~~~~~i~~~d~~tg~~---- 297 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-YLCDVTWA----TQERISLQWLRRIQNYSVMDICDYDESSG---- 297 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-EEEEEEEE----ETTEEEEEEEESSTTEEEEEEEEEETTTT----
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-EEEEEEEe----CCCeEEEEEeCCCCCEEEEEEEECCCCcc----
Confidence 488899988 73 233443 3665 89999999 99997665432 234799999988710
Q ss_pred CCcccccEEE--EE--eccCcccccccccccceEEEEeCCCCEEE-EEeC-C--CeEEEEEcCCCC
Q 039790 464 SDIESWKCTQ--TL--ELKSSAELRLEDAFFNQVVALNRAGLFLL-ANAK-K--NAIYAIHMDYGP 521 (1395)
Q Consensus 464 ~~~~~~~~l~--tl--~~h~~~i~~~~~~~~~~~l~~S~dg~~La-Sgs~-D--g~I~iWdl~~g~ 521 (1395)
.|.|.. ++ ..+...+.. +......|++||+.|+ ..+. + ..|++|++..+.
T Consensus 298 ----~~~~~~~~~l~~~~~~~~v~~----~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 298 ----RWNCLVARQHIEMSTTGWVGR----FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp ----EEEECGGGCEEEECSSSCSSS----SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred ----ccceeEEEEeeeccCCceEcc----CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 011332 11 223322210 0012467999999876 6653 3 458888887653
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.59 E-value=1.3e-12 Score=154.19 Aligned_cols=310 Identities=10% Similarity=0.031 Sum_probs=176.9
Q ss_pred CCEEEEEEc----CCeEEEEECC--CCceEEec-cCCCCeEEEEEeeCCCCEEEEEECC----CcEEEEECCCCCCCCCC
Q 039790 228 RNYICYGLK----LGNIRILNII--TALRSLLR-GHTQRVTDMAFFAEDVHLLASASVD----GRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 228 g~~LasGs~----DG~IrIWd~~--~~~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~D----gtV~IWdl~tg~~~~~~ 296 (1395)
..+++.|++ ++.|++|+++ ++.+..+. .|...+..++| ++++++|++++.+ +.|.+|++....
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~-spdg~~l~~~~~~~~~~~~v~~~~~~~~~----- 86 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIP-SADGKFVYSVNEFSKDQAAVSAFAFDKEK----- 86 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEE-CTTSSEEEEEECCSSTTCEEEEEEEETTT-----
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEE-CCCCCEEEEEEccCCCCCcEEEEEEeCCC-----
Confidence 345666643 5689999774 45322111 17778889999 9999999999986 799999987631
Q ss_pred cccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc
Q 039790 297 PQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH 375 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h 375 (1395)
+ .+..+.....+......+++ ++..++++.. ++.+.+|+....+...... ........+......+
T Consensus 87 ----g-~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~------~~~~~~g~~~~~~~~~ 153 (361)
T 3scy_A 87 ----G-TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS------DVIEFKGSGPDKERQT 153 (361)
T ss_dssp ----T-EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS------EEEECCCCCSCTTTCS
T ss_pred ----C-cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc------eeEEccCCCCCccccC
Confidence 1 11223333333444556666 7777777775 4556666654322210000 0000000000000113
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce------e------EEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP------L------AVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~------l------~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...+.+++|+|+|..+++++..++.|++|++..... + ..+....+..+..++|+ |||++|++++
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s----pdg~~l~v~~ 229 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN----SDGKFAYLIN 229 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC----TTSSEEEEEE
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc----CCCCEEEEEc
Confidence 345789999999933445555689999998875431 1 12222222368999999 9999988877
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC--CCeEEEEEcCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK--KNAIYAIHMDYGP 521 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~--Dg~I~iWdl~~g~ 521 (1395)
..++.|++||+.++ ....+..+....... .....++|++||++|+++.. ++.|.+|++....
T Consensus 230 ~~~~~v~v~~~~~g----------~~~~~~~~~~~~~~~------~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~ 293 (361)
T 3scy_A 230 EIGGTVIAFRYADG----------MLDEIQTVAADTVNA------QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN 293 (361)
T ss_dssp TTTCEEEEEEEETT----------EEEEEEEEESCSSCC------CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT
T ss_pred CCCCeEEEEEecCC----------ceEEeEEEecCCCCC------CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC
Confidence 67999999999865 112233333222110 01136899999998866554 5899999996311
Q ss_pred CCCCcceeeeeeeecc--ccEEEEecCCCCcC--c-CCCCeEEEE--EcCCCceeee----cccceEEecC
Q 039790 522 NPASTRMDYIAEFTVT--MPILSLTGTTTDAS--P-DGEHIVQIY--CVQTQAIQQY----ALDLSQCLPP 581 (1395)
Q Consensus 522 ~~~~~~~~~i~~f~~~--~~ils~~~~~~d~~--~-s~dg~V~lW--dv~t~~i~~~----~~~~~~cl~~ 581 (1395)
..+..+..+... ...+.|+... ..+ . ..++.|.+| |..++++... ......|+.|
T Consensus 294 ----g~~~~~~~~~~g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 294 ----GTLTKVGYQLTGIHPRNFIITPNG-KYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp ----CCEEEEEEEECSSCCCEEEECTTS-CEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred ----CcEEEeeEecCCCCCceEEECCCC-CEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 122233333221 1223444333 212 2 256789996 5557776533 3334556544
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.59 E-value=8.8e-13 Score=150.25 Aligned_cols=240 Identities=16% Similarity=0.128 Sum_probs=171.4
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec------cCCCCeEEEEEeeCCCCEEEEEEC-CCcEEEEE
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR------GHTQRVTDMAFFAEDVHLLASASV-DGRFFIWN 286 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~------~H~~~V~slaf~s~dg~~LaSgs~-DgtV~IWd 286 (1395)
++...+.+++++++|+++++...++.|++||........+. +|...+.+++|...++.++++... ++.|++||
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 45577899999999998888888999999998865555543 345678999994366766666643 88999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
.+++ .+..+. ........+++++++. ++++.. ++.+.+|+.. +..
T Consensus 107 -~~g~--------------~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~--------------- 153 (286)
T 1q7f_A 107 -QYGQ--------------FVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN--GNV--------------- 153 (286)
T ss_dssp -TTSC--------------EEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCE---------------
T ss_pred -CCCc--------------EEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC--CCE---------------
Confidence 4454 122222 2334567899999886 555544 5667777632 110
Q ss_pred cccceEEEc--ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC--CCCCeeEEEEeecCCCCCcEEE
Q 039790 365 LINGVQLVG--KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY--DGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 365 ~~~~~~~l~--~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h--~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
+..+. ++...+.+|+|+++| +++++.+.++.|++||. .+..+..+..+ .. .+..|+++ ++|.+++
T Consensus 154 ----~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~-~p~~i~~d----~~G~l~v 222 (286)
T 1q7f_A 154 ----LHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITN-YPIGVGIN----SNGEILI 222 (286)
T ss_dssp ----EEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSC-SEEEEEEC----TTCCEEE
T ss_pred ----EEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcC-CCCEEEEEccCCccC-CCcEEEEC----CCCCEEE
Confidence 22222 345678999999998 78888888999999996 56777777644 23 78999999 8998777
Q ss_pred EEecCCC-eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 441 TGGPLNR-ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 441 s~Gs~Dg-~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.. .++ .|++||. ++ +.+..+..+.... ....++++++|.++++ +.|+.|++|++..
T Consensus 223 ~~~-~~~~~i~~~~~-~g------------~~~~~~~~~~~~~-------~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 223 ADN-HNNFNLTIFTQ-DG------------QLISALESKVKHA-------QCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEC-SSSCEEEEECT-TS------------CEEEEEEESSCCS-------CEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EeC-CCCEEEEEECC-CC------------CEEEEEcccCCCC-------cceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 754 665 9999995 34 6666776543221 1235899999998888 5699999999865
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.56 E-value=4.5e-13 Score=174.60 Aligned_cols=265 Identities=10% Similarity=-0.015 Sum_probs=166.2
Q ss_pred CcccCCCCCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCC-----CCEEEEEE
Q 039790 150 PSPTLPPPSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP-----GLVLGRQI 224 (1395)
Q Consensus 150 ~~~s~p~p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~-----~~V~~va~ 224 (1395)
..+.+.+++..++++ |+.|++|++... + ....+.+|. .....+.|
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~--~--------------------------~~~~~~~~~~~~~~~~~~~~~~ 69 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYG--N--------------------------SSVFLENSTFDEFGHSINDYSI 69 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTC--C--------------------------EEEEECTTTTTTCCSCCCEEEE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCC--c--------------------------eEEEEechhhhhhcccccceEE
Confidence 346677777777775 889999995421 1 111122222 12345789
Q ss_pred ecCCCEEEEEEcC---------CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 225 AVNRNYICYGLKL---------GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 225 Spdg~~LasGs~D---------G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
||||++|++++.+ +.+.|||+.++....+..|.+.+...+| +|||+.||.+. |+.|++||+.++.....
T Consensus 70 Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~-SPdG~~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 70 SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTW-SPVGHKLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEE-CSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEE-CCCCCEEEEEE-CCeEEEEECCCCceEEE
Confidence 9999999999876 5677999999988888889999999999 99999999885 68999999988762110
Q ss_pred CcccccceEEEEEEecCCC---------CCccEEEEeCCCCeEEEEEeCCe-EEEEEcCCCCcc---------ccccCCC
Q 039790 296 KPQILGKIVVAIQILADGD---------SVHPRVCWHPHKQEILMLAIGNR-ILKIDSNRVGKG---------ERFSAEE 356 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~---------~~v~~v~~sp~~~~lla~g~~~~-ii~~d~~~~~~~---------~~~s~~~ 356 (1395)
.. .+... .++.++. .....+.|+|+|..|+....++. +..|+....... ..|...+
T Consensus 148 t~--~g~~~---~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TW--TGKED---IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp CS--CCBTT---TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred cC--CCCcc---ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 00 00000 0000111 12235899999998887765544 333333111100 0011111
Q ss_pred ----CCccCcccccc---c----eEEEc------ccCCCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCc----e
Q 039790 357 ----PLKCPVDELIN---G----VQLVG------KHDGEITELSMCQWLTTRLASASL----DGTVKIWDDRKST----P 411 (1395)
Q Consensus 357 ----~~~~~~~~~~~---~----~~~l~------~h~~~V~slafspdg~~~LaSgs~----Dg~IrIWDl~sg~----~ 411 (1395)
...+.++++.. + ...+. +|...+..++|+||| ++++.... +..|++||+.+|+ |
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 11223333333 2 23333 378889999999998 66655433 3479999999987 3
Q ss_pred eE--Ee--cCCCCCCee-----EEEEeecCCCCCcEEE-EEecCC--CeEEEEECCCC
Q 039790 412 LA--VL--RPYDGHPVN-----CVTFLIGPHPQHIVLI-TGGPLN--RELKIWASAEE 457 (1395)
Q Consensus 412 l~--tl--~~h~~~~V~-----sV~fs~~~~pdg~~L~-s~Gs~D--g~I~IWDl~tg 457 (1395)
.. .+ .+|.+ +|. .+.|+ |||+.|+ ..+..+ ..|++||+.++
T Consensus 302 ~~~~~l~~~~~~~-~v~~~~~~~p~fs----pDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 302 LVARQHIEMSTTG-WVGRFRPSEPHFT----LDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp CGGGCEEEECSSS-CSSSSSCCCCEEC----TTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred eEEEEeeeccCCc-eEccCcCCCceEc----CCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 22 22 45665 665 78999 9999877 554344 46888888765
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.56 E-value=4e-13 Score=159.69 Aligned_cols=251 Identities=10% Similarity=0.033 Sum_probs=154.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEeccCCCCeEEEEE-eeCCCCEEEEE---------------
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALR-SLLRGHTQRVTDMAF-FAEDVHLLASA--------------- 276 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~-~~l~~H~~~V~slaf-~s~dg~~LaSg--------------- 276 (1395)
++...+.+..|+|||++|++++.++.|++||+.++.. ..+..+.+.+....| .++++.+|+..
T Consensus 78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~ 157 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK 157 (388)
T ss_dssp SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence 4444444567999999999999999999999999854 344555555654444 27888888753
Q ss_pred -------ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEEEeCC------eEEEEE
Q 039790 277 -------SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILMLAIGN------RILKID 342 (1395)
Q Consensus 277 -------s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~~------~ii~~d 342 (1395)
+.++.|++||+.+++ ...+ ..+...+..+.|+| ++..++.+..+. .+..++
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~g~--------------~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (388)
T 3pe7_A 158 FHEFYFTKPCCRLMRVDLKTGE--------------STVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLIN 222 (388)
T ss_dssp HHHHGGGCCCEEEEEEETTTCC--------------EEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEE
T ss_pred hhhhhccCCcceEEEEECCCCc--------------eEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEe
Confidence 244789999999876 1111 22344567899999 888777766532 455555
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcccC--CCeEEEEEecCCCcEEEEEe-CCC----cEEEEeCCCCce--eE
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD--GEITELSMCQWLTTRLASAS-LDG----TVKIWDDRKSTP--LA 413 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~--~~V~slafspdg~~~LaSgs-~Dg----~IrIWDl~sg~~--l~ 413 (1395)
.... . ...+..+. ..+..++|+||| ++|+..+ .++ .|++||+.+++. +.
T Consensus 223 ~~~~-~--------------------~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (388)
T 3pe7_A 223 EDGT-N--------------------MRKVKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENRQLT 280 (388)
T ss_dssp TTSC-C--------------------CEESCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEEEEE
T ss_pred CCCC-c--------------------eEEeeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceEEEE
Confidence 3221 1 22233333 357889999999 5554433 322 399999999874 33
Q ss_pred EecCCCC--CCeeEEEEeecCCCCCcEEEEEe--------cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc
Q 039790 414 VLRPYDG--HPVNCVTFLIGPHPQHIVLITGG--------PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL 483 (1395)
Q Consensus 414 tl~~h~~--~~V~sV~fs~~~~pdg~~L~s~G--------s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~ 483 (1395)
.+.++.. .....+.|+ |||++|+... ..+..|++||+.++ +. ..+..+.....
T Consensus 281 ~~~~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~------------~~-~~l~~~~~~~~ 343 (388)
T 3pe7_A 281 SMPACSHLMSNYDGSLMV----GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG------------TQ-HRVARHDTSWK 343 (388)
T ss_dssp EECCEEEEEECTTSSEEE----EEECCC------------CCCCEEEEEETTTT------------EE-EEEEECCCCCC
T ss_pred cCCCceeeeecCCCCeEc----cCCCcceeEeeeccccccCCCCEEEEEeccCC------------ce-EEeccccCccc
Confidence 4443110 012234798 9999888642 35779999999876 43 33444432000
Q ss_pred c--ccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcC
Q 039790 484 R--LEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMD 518 (1395)
Q Consensus 484 ~--~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~ 518 (1395)
. .........++|++||++|+..+ .++...||.++
T Consensus 344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 344 VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 0 00000122478999999887666 46666666554
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.56 E-value=1.8e-12 Score=151.63 Aligned_cols=248 Identities=10% Similarity=0.129 Sum_probs=175.0
Q ss_pred CCCEEEEEEecCCCEEEEEEcC------------------------CeEEEEECCCCceEEec--cCCCCeEEEEEeeCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKL------------------------GNIRILNIITALRSLLR--GHTQRVTDMAFFAED 269 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~D------------------------G~IrIWd~~~~~~~~l~--~H~~~V~slaf~s~d 269 (1395)
.+.+.+++++++|+++++...+ +.|.+||..++.+.... ++-.....|+| .++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~-d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI-DTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE-CTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE-CCC
Confidence 4779999999999999888877 47999999887544332 45568999999 889
Q ss_pred CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEe------cCCCCCccEEEEeCCCCeEEEEEe--CCeEEEE
Q 039790 270 VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQIL------ADGDSVHPRVCWHPHKQEILMLAI--GNRILKI 341 (1395)
Q Consensus 270 g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~------~~~~~~v~~v~~sp~~~~lla~g~--~~~ii~~ 341 (1395)
|+++++...++.|++||...... .+..+... ..+-.....++++++++.++++.. ++.|.+|
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~----------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEG----------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF 171 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSC----------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeE----------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence 99999998999999999864320 00011000 122335678999995556666663 5667666
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEc----------ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVG----------KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP 411 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~----------~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~ 411 (1395)
+.. +.. +..+. ++-.....|+|+++++.++++...+++|++||..+|+.
T Consensus 172 ~~~--g~~-------------------~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~ 230 (329)
T 3fvz_A 172 SPS--GKF-------------------VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF 230 (329)
T ss_dssp CTT--SCE-------------------EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred cCC--CCE-------------------EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE
Confidence 631 111 12222 12345899999999448888888999999999998999
Q ss_pred eEEec--CCCCCCeeEEEEeecCCCCCcEEEEEe------cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc
Q 039790 412 LAVLR--PYDGHPVNCVTFLIGPHPQHIVLITGG------PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL 483 (1395)
Q Consensus 412 l~tl~--~h~~~~V~sV~fs~~~~pdg~~L~s~G------s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~ 483 (1395)
+.++. .+.. .+.+++|+ | +..+++.| ..+..|++||+.++ +++.++.......
T Consensus 231 ~~~~~~~~~~~-~~~~~~~~----p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g------------~~~~~~~~~~~~~- 291 (329)
T 3fvz_A 231 VREIKHASFGR-NVFAISYI----P-GFLFAVNGKPYFGDQEPVQGFVMNFSSG------------EIIDVFKPVRKHF- 291 (329)
T ss_dssp EEEECCTTTTT-CEEEEEEE----T-TEEEEEECCCCTTCSCCCCEEEEETTTC------------CEEEEECCSSSCC-
T ss_pred EEEEeccccCC-Ccceeeec----C-CEEEEeCCCEEeccCCCcEEEEEEcCCC------------eEEEEEcCCCCcc-
Confidence 99885 3444 78999998 7 44443333 23458999999888 8887774211111
Q ss_pred cccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 484 RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 484 ~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.....++++++|.++++...++.|++|++..
T Consensus 292 -----~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 292 -----DMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -----SSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred -----CCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 1123689999999999999999999999864
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.53 E-value=2.8e-13 Score=160.96 Aligned_cols=238 Identities=8% Similarity=0.087 Sum_probs=152.4
Q ss_pred CEEEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEeccCCCCeE-EEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 218 LVLGRQIAVNRNYICYGLKL---GNIRILNIITALRSLLRGHTQRVT-DMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~D---G~IrIWd~~~~~~~~l~~H~~~V~-slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
.+.+++|+|||++|+++... ..|.+||+.++....+..+...+. .+.| ++||++|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-spdg~~l~~~~~~~~l~~~d~~~~~~- 114 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFI-STDERAFFYVKNELNLMKVDLETLEE- 114 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEE-CTTSSEEEEEETTTEEEEEETTTCCE-
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceE-CCCCCEEEEEEcCCcEEEEECCCCCc-
Confidence 36678899999999888653 478899999987666655554443 4788 99999999999999999999988761
Q ss_pred CCCcccccceEEEEEEecCCCCCccE-------------------EEEeCCCCeEEEEE-----eCCeEEEEEcCCCCcc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPR-------------------VCWHPHKQEILMLA-----IGNRILKIDSNRVGKG 349 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~-------------------v~~sp~~~~lla~g-----~~~~ii~~d~~~~~~~ 349 (1395)
..+...+...... +.|+|++..++... ....+.+|+... +.
T Consensus 115 -------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~-g~- 179 (396)
T 3c5m_A 115 -------------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET-GE- 179 (396)
T ss_dssp -------------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT-CC-
T ss_pred -------------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC-Cc-
Confidence 1111111110000 23455554433321 223344444321 11
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEec-CCCcEEEEEeCC------CcEEEEeCCCCceeEEecCCC-CC
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ-WLTTRLASASLD------GTVKIWDDRKSTPLAVLRPYD-GH 421 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp-dg~~~LaSgs~D------g~IrIWDl~sg~~l~tl~~h~-~~ 421 (1395)
...+..+...+..+.|+| ++ .+|+.++.+ ..|.+||+..+.. ..+..+. ..
T Consensus 180 -------------------~~~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~ 238 (396)
T 3c5m_A 180 -------------------LEVIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGE 238 (396)
T ss_dssp -------------------EEEEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTE
T ss_pred -------------------EEeeccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCc
Confidence 223334677899999999 66 666666543 3688999876653 3333332 22
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCC----CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLN----RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN 497 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~D----g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S 497 (1395)
.+..+.|+ |||++|+.++..+ +.|++||+.++ +......... . ...|+
T Consensus 239 ~~~~~~~s----pdg~~l~~~~~~~~~~~~~l~~~d~~~g------------~~~~l~~~~~----------~--~~~~s 290 (396)
T 3c5m_A 239 SCTHEFWI----PDGSAMAYVSYFKGQTDRVIYKANPETL------------ENEEVMVMPP----------C--SHLMS 290 (396)
T ss_dssp EEEEEEEC----TTSSCEEEEEEETTTCCEEEEEECTTTC------------CEEEEEECCS----------E--EEEEE
T ss_pred cccceEEC----CCCCEEEEEecCCCCccceEEEEECCCC------------CeEEeeeCCC----------C--CCCcc
Confidence 58889999 9999887765222 45999999876 4333222111 1 16788
Q ss_pred C-CCCEEEEEe----------------CCCeEEEEEcCCCC
Q 039790 498 R-AGLFLLANA----------------KKNAIYAIHMDYGP 521 (1395)
Q Consensus 498 ~-dg~~LaSgs----------------~Dg~I~iWdl~~g~ 521 (1395)
+ ||.+|++++ .++.|++||+..+.
T Consensus 291 ~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 291 NFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp CSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred CCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 8 999888754 34789999998754
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.52 E-value=6.2e-13 Score=170.49 Aligned_cols=252 Identities=12% Similarity=0.006 Sum_probs=168.6
Q ss_pred eeeCCCCCEEEEEEecCCCEEEEE--EcCCeEEEEEC-CCCceEEeccCCCCeE---------EEEEe-eCCCCE-EEEE
Q 039790 211 KYISDPGLVLGRQIAVNRNYICYG--LKLGNIRILNI-ITALRSLLRGHTQRVT---------DMAFF-AEDVHL-LASA 276 (1395)
Q Consensus 211 ~l~~h~~~V~~va~Spdg~~LasG--s~DG~IrIWd~-~~~~~~~l~~H~~~V~---------slaf~-s~dg~~-LaSg 276 (1395)
.+.+|...+..++|++++-+++++ ..++..+||.. .++....+..|...|. ...|+ +|||++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456788999999999877666666 55889999995 4456777888877777 67774 389998 7765
Q ss_pred EC-CCcEEEEECC--C-CCCCCCCcccccceEEEEEEecC-----CCCCccEEEEeCCCCeEEEEEeC----------Ce
Q 039790 277 SV-DGRFFIWNIT--E-GPDEEDKPQILGKIVVAIQILAD-----GDSVHPRVCWHPHKQEILMLAIG----------NR 337 (1395)
Q Consensus 277 s~-DgtV~IWdl~--t-g~~~~~~~~~~~~~i~~l~~~~~-----~~~~v~~v~~sp~~~~lla~g~~----------~~ 337 (1395)
+. +..|++|++. . +.. ..+.. +...+..++|+|+++.|+++..+ ..
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~---------------~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVP---------------RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCC---------------EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred ECCCCeEEEEcCCCCCCCCC---------------EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 54 5667777765 2 331 11112 34456789999999988888765 35
Q ss_pred EEEEEcCCC-----CccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeCCC--------cEEE
Q 039790 338 ILKIDSNRV-----GKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASLDG--------TVKI 403 (1395)
Q Consensus 338 ii~~d~~~~-----~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~Dg--------~IrI 403 (1395)
+++|+.... +. ...+. .+...+..++||||| ++|+.++.++ .|++
T Consensus 163 i~~~~~~~~~~~~~~~--------------------~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~ 221 (662)
T 3azo_A 163 LAAVPLDGSAAADRSA--------------------VRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKT 221 (662)
T ss_dssp EEEEETTSTTTTCGGG--------------------SEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEE
T ss_pred EEEEECCCCccccCCc--------------------eeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEE
Confidence 666655321 11 23333 455678889999999 7888777553 7999
Q ss_pred EeCC-CC---ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 404 WDDR-KS---TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 404 WDl~-sg---~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
||+. +| .......+|.. .+..+.|+ |||++++++ +.|+ .|.+||+.++ ++...+..
T Consensus 222 ~d~~~~g~~~~~~~l~~~~~~-~~~~~~~s----pdg~l~~~~-~~~~~~~l~~~~~~~~------------~~~~l~~~ 283 (662)
T 3azo_A 222 ARVTEDGRFADTRTLLGGPEE-AIAQAEWA----PDGSLIVAT-DRTGWWNLHRVDPATG------------AATQLCRR 283 (662)
T ss_dssp EEECTTSCEEEEEEEEEETTB-CEEEEEEC----TTSCEEEEE-CTTSSCEEEEECTTTC------------CEEESSCC
T ss_pred EEECCCCcccccEEeCCCCCc-eEcceEEC----CCCeEEEEE-CCCCCeEEEEEECCCC------------ceeecccc
Confidence 9998 57 44444455555 89999999 999966654 4788 5666666555 43332222
Q ss_pred cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 478 KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 478 h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+. .........-...++|++++.+++++.. +.++||.++
T Consensus 284 ~~-~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 284 EE-EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp SS-BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred cc-cccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 22 1111111111234888999999999998 999999554
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.52 E-value=3.1e-12 Score=151.76 Aligned_cols=241 Identities=13% Similarity=0.095 Sum_probs=149.5
Q ss_pred EEEEEEcC--CeEEEEEC--CCCceEEec----cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC-CCCCCCCCcccc
Q 039790 230 YICYGLKL--GNIRILNI--ITALRSLLR----GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT-EGPDEEDKPQIL 300 (1395)
Q Consensus 230 ~LasGs~D--G~IrIWd~--~~~~~~~l~----~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~-tg~~~~~~~~~~ 300 (1395)
+|++|++. +.|.+|++ .++.+..+. ++...+..++| ++++++|++++.+ .|.+||+. +++
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~-spdg~~l~~~~~~-~v~~~~~~~~g~--------- 72 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTF-DHERKNIYGAAMK-KWSSFAVKSPTE--------- 72 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEE-CTTSSEEEEEEBT-EEEEEEEEETTE---------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEE-CCCCCEEEEEccc-eEEEEEECCCCC---------
Confidence 45666653 56888765 455443332 23457889999 8999999999988 99999997 554
Q ss_pred cceEEEEEEecCCCCCccEEEEeCCCCeE-EEEE--------------eCCeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 301 GKIVVAIQILADGDSVHPRVCWHPHKQEI-LMLA--------------IGNRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 301 ~~~i~~l~~~~~~~~~v~~v~~sp~~~~l-la~g--------------~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
....... ..+ .....++|+|+++.+ ++++ .++.+.+|+....+..
T Consensus 73 --~~~~~~~-~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~---------------- 132 (365)
T 1jof_A 73 --IVHEASH-PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL---------------- 132 (365)
T ss_dssp --EEEEEEE-ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE----------------
T ss_pred --EEEeeEe-ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC----------------
Confidence 1111111 111 235568999999863 3333 3555666655322211
Q ss_pred ccceEEE-cccCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCC-CCcee--EEec--CCCCCCeeEEEEeecCCCCCcE
Q 039790 366 INGVQLV-GKHDGEITELSMCQWLTTRLASAS-LDGTVKIWDDR-KSTPL--AVLR--PYDGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 366 ~~~~~~l-~~h~~~V~slafspdg~~~LaSgs-~Dg~IrIWDl~-sg~~l--~tl~--~h~~~~V~sV~fs~~~~pdg~~ 438 (1395)
...+..+ ..+...+.+++|+||| ++|++++ .++.|++||+. +|+.. ..+. .|.. .+..++|+ |||++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~-~p~~~~~s----pdg~~ 206 (365)
T 1jof_A 133 EKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD-HPRWVAMH----PTGNY 206 (365)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC-CEEEEEEC----TTSSE
T ss_pred cceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC-CCCEeEEC----CCCCE
Confidence 0001111 1255689999999999 6676665 46899999998 77643 3443 2343 79999999 99999
Q ss_pred EEEEecCCCeEEEEECCCCCCCCCCCCcccccEE---EEEeccCcccccccc-----cccceEEE-EeCCCCEEEEEeC-
Q 039790 439 LITGGPLNRELKIWASAEEEGWLLPSDIESWKCT---QTLELKSSAELRLED-----AFFNQVVA-LNRAGLFLLANAK- 508 (1395)
Q Consensus 439 L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l---~tl~~h~~~i~~~~~-----~~~~~~l~-~S~dg~~LaSgs~- 508 (1395)
|++++..++.|.+|++.... +++. +.+......... +. .+....++ |++||++|+++..
T Consensus 207 l~v~~~~~~~v~v~~~~~~~----------g~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 207 LYALMEAGNRICEYVIDPAT----------HMPVYTHHSFPLIPPGIPD-RDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEETTTTEEEEEEECTTT----------CCEEEEEEEEESSCTTCCC-BCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCeEEEEEEeCCC----------CcEEEccceEEcCCCCcCC-cccccccccccccEEEECCCCCEEEEECCC
Confidence 98877568999999876310 0332 223211100000 00 01234588 9999998876653
Q ss_pred CC-----eEEEEEcC
Q 039790 509 KN-----AIYAIHMD 518 (1395)
Q Consensus 509 Dg-----~I~iWdl~ 518 (1395)
++ .|++|++.
T Consensus 276 ~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 276 NKFELQGYIAGFKLR 290 (365)
T ss_dssp SSTTSCCEEEEEEEC
T ss_pred CCCCCCCeEEEEEEC
Confidence 33 89999996
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.51 E-value=6.6e-12 Score=143.95 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=173.8
Q ss_pred cceeeeeCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEE
Q 039790 207 TPITKYISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIW 285 (1395)
Q Consensus 207 ~~i~~l~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IW 285 (1395)
..+..+..+.....+++|+++|+ +++++..++.|++||..++ ...+..+...+.+++| .++|+++++...++.|++|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~-~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCL-NKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEE-CTTCCEEEEETTTTEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeE-CCCCcEEEEecCCCeEEEE
Confidence 34455556677889999999998 7788888999999999998 7777778888999999 8899988887778899999
Q ss_pred ECCCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEE---Ee--------------CCeEEEEEcCCCC
Q 039790 286 NITEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILML---AI--------------GNRILKIDSNRVG 347 (1395)
Q Consensus 286 dl~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~---g~--------------~~~ii~~d~~~~~ 347 (1395)
|..+++. ........ .....+..++++++|..+++. |. .+.+++++.. +
T Consensus 96 d~~~g~~-----------~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g 162 (296)
T 3e5z_A 96 REPGGEW-----------ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G 162 (296)
T ss_dssp CSTTCCE-----------EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S
T ss_pred cCCCCcE-----------EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--C
Confidence 9987761 10111111 112345679999988644432 21 2355555432 1
Q ss_pred ccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCce---eEEecCCCCCCe
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-KSTP---LAVLRPYDGHPV 423 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~-sg~~---l~tl~~h~~~~V 423 (1395)
. ...+..+....+.++|+|++ ++|++.+.++.|++||+. .+.. ...+..+.+ .+
T Consensus 163 ~--------------------~~~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-~p 220 (296)
T 3e5z_A 163 T--------------------LSAPIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG-KT 220 (296)
T ss_dssp C--------------------EEEEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS-CC
T ss_pred C--------------------EEEeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC-CC
Confidence 1 23344566678999999999 666888888999999987 5654 344433444 78
Q ss_pred eEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEE-eCCCCE
Q 039790 424 NCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVAL-NRAGLF 502 (1395)
Q Consensus 424 ~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~-S~dg~~ 502 (1395)
.+++|+ ++|+++++. ++.|.+||.. + +++..+..+.. +. .++| ++++..
T Consensus 221 ~~i~~d----~~G~l~v~~---~~~v~~~~~~-g------------~~~~~~~~~~~-~~---------~~~f~~~d~~~ 270 (296)
T 3e5z_A 221 DGLRVD----AGGLIWASA---GDGVHVLTPD-G------------DELGRVLTPQT-TS---------NLCFGGPEGRT 270 (296)
T ss_dssp CSEEEB----TTSCEEEEE---TTEEEEECTT-S------------CEEEEEECSSC-CC---------EEEEESTTSCE
T ss_pred CeEEEC----CCCCEEEEc---CCeEEEECCC-C------------CEEEEEECCCC-ce---------eEEEECCCCCE
Confidence 899999 999876653 7899999986 5 67777776654 32 4777 588888
Q ss_pred EEEEeCCCeEEEEEcCC
Q 039790 503 LLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 503 LaSgs~Dg~I~iWdl~~ 519 (1395)
|+.++.+ .++-++..+
T Consensus 271 L~v~t~~-~l~~~~~~~ 286 (296)
T 3e5z_A 271 LYMTVST-EFWSIETNV 286 (296)
T ss_dssp EEEEETT-EEEEEECSC
T ss_pred EEEEcCC-eEEEEEccc
Confidence 8887765 455555544
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.48 E-value=2.2e-12 Score=165.41 Aligned_cols=238 Identities=9% Similarity=0.014 Sum_probs=157.4
Q ss_pred EEEEe--cCCCE-EEEEEc-CCeEEEEECC--C-CceEEecc-----CCCCeEEEEEeeCCCCEEEEEECC---------
Q 039790 221 GRQIA--VNRNY-ICYGLK-LGNIRILNII--T-ALRSLLRG-----HTQRVTDMAFFAEDVHLLASASVD--------- 279 (1395)
Q Consensus 221 ~va~S--pdg~~-LasGs~-DG~IrIWd~~--~-~~~~~l~~-----H~~~V~slaf~s~dg~~LaSgs~D--------- 279 (1395)
...|+ |||++ |++++. +..|.+|++. + +....+.. |...+.+++| ++||++|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~-spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL-LPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE-ETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE-CCCCCEEEEEEecccCCCCCCc
Confidence 34455 99998 887654 5678888877 4 66666666 6778999999 9999999999887
Q ss_pred -CcEEEEECCC------CCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEeCC--------eEEEEEc
Q 039790 280 -GRFFIWNITE------GPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAIGN--------RILKIDS 343 (1395)
Q Consensus 280 -gtV~IWdl~t------g~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~~~--------~ii~~d~ 343 (1395)
..|++||+.+ +.. ..+. .+...+..+.|+|+|+.|+.++.++ .+.+|+.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~ 224 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAV---------------RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARV 224 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGS---------------EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCce---------------eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEE
Confidence 5899999987 431 1222 3345566789999999888777553 4555555
Q ss_pred CCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceeEEecCCCCC
Q 039790 344 NRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG--TVKIWDDRKSTPLAVLRPYDGH 421 (1395)
Q Consensus 344 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg--~IrIWDl~sg~~l~tl~~h~~~ 421 (1395)
...+.. .....+..+|...+..++|+||| +++++++.|+ .|.+||+.+++......++..
T Consensus 225 ~~~g~~----------------~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~- 286 (662)
T 3azo_A 225 TEDGRF----------------ADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCRREEE- 286 (662)
T ss_dssp CTTSCE----------------EEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSCCSSB-
T ss_pred CCCCcc----------------cccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeeccccccc-
Confidence 322200 00133444567889999999999 5888888888 566777767765544443332
Q ss_pred C--------eeEEEEeecCCCCCcEEEEEecCCCeEEEE--ECCCCCCCCCCCCcccccEEEEEeccCcccccccccccc
Q 039790 422 P--------VNCVTFLIGPHPQHIVLITGGPLNRELKIW--ASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFN 491 (1395)
Q Consensus 422 ~--------V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW--Dl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~ 491 (1395)
. +.+++|+ +++++++++. . +.++|| |+.++ . +..+..+...+.
T Consensus 287 ~~~p~w~~~~~~~~~~----~~~~~~~~~~-~-~~~~l~~~d~~~~------------~-~~~l~~~~~~~~-------- 339 (662)
T 3azo_A 287 FAGPLWTPGMRWFAPL----ANGLIAVVHG-K-GAAVLGILDPESG------------E-LVDAAGPWTEWA-------- 339 (662)
T ss_dssp SSCCCCSTTCCSEEEC----TTSCEEEEEB-S-SSCEEEEEETTTT------------E-EEECCSSCCEEE--------
T ss_pred ccCccccccCceEeEe----CCCEEEEEEE-c-CccEEEEEECCCC------------c-EEEecCCCCeEE--------
Confidence 2 5688998 8898888865 6 999999 54443 3 455555433221
Q ss_pred eEE-EEeCCCCEEEEEeCCCe--EEEEEcCCC
Q 039790 492 QVV-ALNRAGLFLLANAKKNA--IYAIHMDYG 520 (1395)
Q Consensus 492 ~~l-~~S~dg~~LaSgs~Dg~--I~iWdl~~g 520 (1395)
.+ .++.++.++++++.+.. |++|++..+
T Consensus 340 -~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 340 -ATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp -EEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred -EEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 23 44444445555555554 555565554
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.47 E-value=1.3e-12 Score=155.32 Aligned_cols=241 Identities=11% Similarity=0.034 Sum_probs=146.8
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceEE-eccCCCCeEE-------------------EEEeeCCCCEEEEE----
Q 039790 221 GRQIAVNRNYICYGLKLGNIRILNIITALRSL-LRGHTQRVTD-------------------MAFFAEDVHLLASA---- 276 (1395)
Q Consensus 221 ~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~-l~~H~~~V~s-------------------laf~s~dg~~LaSg---- 276 (1395)
++.|+|||++|++++.++.|++||+.++.... +..+.+...+ ++| +++++.++.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~-spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW-QPLTSWEKFAEFYH 163 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC-CCCCSHHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccccccc-CCCCcceeeeeecc
Confidence 36799999999999999999999999885443 3334443333 234 5666665544
Q ss_pred -ECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeC-CCCeEEEEEeCC------eEEEEEcCCCCc
Q 039790 277 -SVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHP-HKQEILMLAIGN------RILKIDSNRVGK 348 (1395)
Q Consensus 277 -s~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp-~~~~lla~g~~~------~ii~~d~~~~~~ 348 (1395)
..++.|++||+.+++ ...+. .+...+..+.|+| ++..++.++.+. .+..++... +.
T Consensus 164 ~~~~~~l~~~d~~~g~--------------~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~ 227 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGE--------------LEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SN 227 (396)
T ss_dssp TCCCEEEEEEETTTCC--------------EEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CC
T ss_pred CCCcceEEEEECCCCc--------------EEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-Cc
Confidence 456789999998876 11111 2345567899999 676666665432 355554321 10
Q ss_pred cccccCCCCCccCccccccceEEEccc--CCCeEEEEEecCCCcEEEEEeCC-----CcEEEEeCCCCceeEEecCCCCC
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKH--DGEITELSMCQWLTTRLASASLD-----GTVKIWDDRKSTPLAVLRPYDGH 421 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h--~~~V~slafspdg~~~LaSgs~D-----g~IrIWDl~sg~~l~tl~~h~~~ 421 (1395)
...+..+ ...+..++|+||| ++|+.++.+ +.|++||+.+++...... ..+
T Consensus 228 --------------------~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~- 284 (396)
T 3c5m_A 228 --------------------VRKIKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP- 284 (396)
T ss_dssp --------------------CEESSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-
T ss_pred --------------------eeEeeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-
Confidence 1222222 2357889999999 666665543 449999999887544332 222
Q ss_pred CeeEEEEeecCCC-CCcEEEEEec---------------CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc--
Q 039790 422 PVNCVTFLIGPHP-QHIVLITGGP---------------LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL-- 483 (1395)
Q Consensus 422 ~V~sV~fs~~~~p-dg~~L~s~Gs---------------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~-- 483 (1395)
.. +.|+ | ||++|+++++ .++.|++||+.++ +. ..+..+.....
T Consensus 285 -~~-~~~s----~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~------------~~-~~l~~~~~~~~~~ 345 (396)
T 3c5m_A 285 -CS-HLMS----NFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK------------SA-QKLCKHSTSWDVL 345 (396)
T ss_dssp -EE-EEEE----CSSSSEEEEEECCC----------CCCCCCEEEEEETTTT------------BC-CEEEECCCCCCCB
T ss_pred -CC-CCcc----CCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC------------ce-EEccCCCCccccc
Confidence 33 8999 8 9998887542 3478999999876 32 22333322100
Q ss_pred cccccccceEEEEeCCCCEEEEEeC-CCe--EEEEEcCCC
Q 039790 484 RLEDAFFNQVVALNRAGLFLLANAK-KNA--IYAIHMDYG 520 (1395)
Q Consensus 484 ~~~~~~~~~~l~~S~dg~~LaSgs~-Dg~--I~iWdl~~g 520 (1395)
............|++||.+|+..+. ++. |+++++..+
T Consensus 346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 346 DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred cccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 0000001123678999998877664 444 555555443
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.45 E-value=4.1e-11 Score=139.44 Aligned_cols=243 Identities=7% Similarity=-0.042 Sum_probs=160.8
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec-cCCCCeEEEEEeeCCCCEEEEEECC----CcEE
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR-GHTQRVTDMAFFAEDVHLLASASVD----GRFF 283 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~D----gtV~ 283 (1395)
+..+..+...+.+++|+++|++++++..++.|++||..++....+. .+...+.+++| .+++++++++..+ +.|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~-~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKI-HKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEE-CTTSCEEEEECTTSSSCCEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEE-CCCCcEEEEeCCCCCCCceEE
Confidence 3455566678899999999998888888999999999988655443 56788999999 8899988887776 6899
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-------CeEEEEEcCCCCccccccCCC
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-------NRILKIDSNRVGKGERFSAEE 356 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-------~~ii~~d~~~~~~~~~~s~~~ 356 (1395)
+||..++... .+.........+..+++++++. ++++... +.+++++... +.
T Consensus 116 ~~d~~~~~~~------------~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~-~~-------- 173 (333)
T 2dg1_A 116 AATENGDNLQ------------DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-RT-------- 173 (333)
T ss_dssp EECTTSCSCE------------EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS-CC--------
T ss_pred EEeCCCCEEE------------EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCC-CE--------
Confidence 9999876510 0100012334577899999885 4444442 4455554321 11
Q ss_pred CCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEE--------ecCCCCCCeeEEE
Q 039790 357 PLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAV--------LRPYDGHPVNCVT 427 (1395)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~t--------l~~h~~~~V~sV~ 427 (1395)
...+..+...+..++|+++|..++++.+.++.|.+||+.+ +..+.. +.++ . .+..++
T Consensus 174 ------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~-~~~~i~ 239 (333)
T 2dg1_A 174 ------------VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E-GPDSCC 239 (333)
T ss_dssp ------------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S-EEEEEE
T ss_pred ------------EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C-CCCceE
Confidence 1222223345889999999833455666788999999864 443321 2233 2 688999
Q ss_pred EeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 428 FLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
++ ++|.++++.. .++.|.+||. .+ +.+..+..+..... +. .....++|++||..|+.++
T Consensus 240 ~d----~~G~l~v~~~-~~~~v~~~d~-~g------------~~~~~~~~~~~~~g--~~-~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 240 ID----SDDNLYVAMY-GQGRVLVFNK-RG------------YPIGQILIPGRDEG--HM-LRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp EB----TTCCEEEEEE-TTTEEEEECT-TS------------CEEEEEECTTGGGT--CS-CBCCEEEECTTSCEEEEEE
T ss_pred EC----CCCCEEEEEc-CCCEEEEECC-CC------------CEEEEEEcCCCccc--cc-cCcceEEECCCCCEEEEEe
Confidence 98 8998777654 6899999998 44 56666654432000 00 0123588889986665555
Q ss_pred CC
Q 039790 508 KK 509 (1395)
Q Consensus 508 ~D 509 (1395)
.+
T Consensus 299 ~~ 300 (333)
T 2dg1_A 299 ND 300 (333)
T ss_dssp EC
T ss_pred Cc
Confidence 44
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.44 E-value=1.1e-11 Score=160.50 Aligned_cols=256 Identities=11% Similarity=0.051 Sum_probs=165.5
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCC-----eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc--------
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLG-----NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR-------- 281 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG-----~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt-------- 281 (1395)
|...+.+++|||||++||+++.++ .|+|||+.++.......+...+.+++| ++||+.|+.++.|+.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~w-spDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW-THDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEE-CTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEE-EeCCCEEEEEEECCccccccccc
Confidence 444688899999999999886644 899999999865433222233778999 999999999998876
Q ss_pred --------EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-----CCeEEEEEcCCCCc
Q 039790 282 --------FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-----GNRILKIDSNRVGK 348 (1395)
Q Consensus 282 --------V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-----~~~ii~~d~~~~~~ 348 (1395)
|++|++.++.... . .+.....+...+..+.|+|++++++.+.. +..+.+|+......
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~-------~---~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSED-------I---LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGC-------E---EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred cccCCCCEEEEEECCCCcccc-------e---EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence 9999998765110 0 11111223445668999999998888776 34566666532100
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCc--eeEEecCCCC-CC
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKST--PLAVLRPYDG-HP 422 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~--~l~tl~~h~~-~~ 422 (1395)
. ... ......+..+...+.. .|+++|..+++.+..+ +.|.+||+.++. ....+..|.. ..
T Consensus 272 ~--~~~-----------~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 272 G--ITG-----------ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp S--SCS-----------SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred c--cCC-----------ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 0 000 0013444456666655 4888884444444333 369999998874 3455555543 26
Q ss_pred eeEEEEeecCCCCCcEEEEEecCCCe--EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 423 VNCVTFLIGPHPQHIVLITGGPLNRE--LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 423 V~sV~fs~~~~pdg~~L~s~Gs~Dg~--I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
+..++|+ +++.++++.. .|+. |.+||+.++ +++..+..+...+ ..+.+++++
T Consensus 338 ~~~~~~~----~~~~lv~~~~-~~g~~~l~~~~~~~g------------~~~~~l~~~~~~v---------~~~~~s~d~ 391 (710)
T 2xdw_A 338 LEWVACV----RSNFLVLCYL-HDVKNTLQLHDLATG------------ALLKIFPLEVGSV---------VGYSGQKKD 391 (710)
T ss_dssp EEEEEEE----TTTEEEEEEE-ETTEEEEEEEETTTC------------CEEEEECCCSSEE---------EEEECCTTC
T ss_pred EEEEEEE----cCCEEEEEEE-ECCEEEEEEEECCCC------------CEEEecCCCCceE---------EEEecCCCC
Confidence 8889998 6666666654 7875 556676566 6677777653322 246778888
Q ss_pred CEEEEE-e---CCCeEEEEEcCCCC
Q 039790 501 LFLLAN-A---KKNAIYAIHMDYGP 521 (1395)
Q Consensus 501 ~~LaSg-s---~Dg~I~iWdl~~g~ 521 (1395)
..|+.. + ..+.|++||+.+++
T Consensus 392 ~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 392 TEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEeCCCCCCEEEEEECCCCc
Confidence 765533 2 35789999998764
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.40 E-value=3.4e-11 Score=143.00 Aligned_cols=240 Identities=10% Similarity=0.012 Sum_probs=154.1
Q ss_pred EEEEecCCCEEEEEE----------cCCeEEEEECCCCc-eEEecc------CCCCeEEEEEeeCCCCEEEEEEC--CCc
Q 039790 221 GRQIAVNRNYICYGL----------KLGNIRILNIITAL-RSLLRG------HTQRVTDMAFFAEDVHLLASASV--DGR 281 (1395)
Q Consensus 221 ~va~Spdg~~LasGs----------~DG~IrIWd~~~~~-~~~l~~------H~~~V~slaf~s~dg~~LaSgs~--Dgt 281 (1395)
.++|++||++|+++. .++.|.+||..+.. ...+.. +......++| +++|++|+++.. +++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~-spdg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQ-TTDGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEE-CTTSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEE-CCCCCEEEEECCCCCCe
Confidence 789999999999886 36789999998864 334332 2345778999 999999998874 689
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEE-ecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQI-LADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~-~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
|.+||+.+++ .+.. +.... ...+.+.|++ ..+++.+.++.+..|.....++....
T Consensus 133 v~v~d~~~~~--------------~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~------- 189 (361)
T 2oiz_A 133 IGIVDVAKGD--------------YVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ------- 189 (361)
T ss_dssp EEEEETTTTE--------------EEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE-------
T ss_pred EEEEECCCCc--------------EEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee-------
Confidence 9999999876 1222 22111 1124556665 34555556666666654332221000
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCC------CC---CCeeEEEE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPY------DG---HPVNCVTF 428 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h------~~---~~V~sV~f 428 (1395)
......+..+...+ .+.+++++ ..++..+.++.|.+||+..+. .+..+... .+ .....++|
T Consensus 190 ------~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 190 ------SRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp ------EECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred ------ccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 00000111112221 23346776 566667789999999987653 22222211 11 01233789
Q ss_pred eecCCCCCcEEEEEecC----------CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 429 LIGPHPQHIVLITGGPL----------NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 429 s~~~~pdg~~L~s~Gs~----------Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
+ +++.++++++.. +++|.+||+.++ +.+.++..+. .. .++|++
T Consensus 262 ~----~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~------------~~v~~i~~~~--p~---------~ia~sp 314 (361)
T 2oiz_A 262 H----RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK------------QRVARIPGRD--AL---------SMTIDQ 314 (361)
T ss_dssp E----TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT------------EEEEEEECTT--CC---------EEEEET
T ss_pred e----cCCCeEEEEEccCCCcccccCCCceEEEEECCCC------------cEEEEEecCC--ee---------EEEECC
Confidence 8 998888776531 348999999988 8999998765 22 599999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC
Q 039790 499 AGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 499 dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
||++|+++.. +.|++||..++
T Consensus 315 dg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 315 QRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEECS-SCEEEEECSSS
T ss_pred CCCEEEEeCC-CeEEEEECCCC
Confidence 9999998886 99999999876
No 178
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=1.2e-10 Score=133.72 Aligned_cols=240 Identities=9% Similarity=0.077 Sum_probs=161.5
Q ss_pred eCCCCCEEEEEEecCCCEEEE-------EEcCCeEEEEECCCCceEEecc-----CCCCeEEEEEeeCC-CCEEEEEECC
Q 039790 213 ISDPGLVLGRQIAVNRNYICY-------GLKLGNIRILNIITALRSLLRG-----HTQRVTDMAFFAED-VHLLASASVD 279 (1395)
Q Consensus 213 ~~h~~~V~~va~Spdg~~Las-------Gs~DG~IrIWd~~~~~~~~l~~-----H~~~V~slaf~s~d-g~~LaSgs~D 279 (1395)
........+++|+++|+++++ +..++.|.+||..++....+.. +...+.+++| .++ ++++++.. +
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~-~~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC-DRDANQLFVADM-R 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEE-CSSSSEEEEEET-T
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEE-ecCCCcEEEEEC-C
Confidence 444556789999999988887 6778999999988886554443 5678999999 777 66555444 4
Q ss_pred CcEEEEECCCCCCCCCCcccccceEEEEEE-ec----CCCCCccEEEEeCCCCeEEEEEeC----------------CeE
Q 039790 280 GRFFIWNITEGPDEEDKPQILGKIVVAIQI-LA----DGDSVHPRVCWHPHKQEILMLAIG----------------NRI 338 (1395)
Q Consensus 280 gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~-~~----~~~~~v~~v~~sp~~~~lla~g~~----------------~~i 338 (1395)
+.|.+||.. ++. ..+ .. .....+..+++++++. ++++... +.+
T Consensus 92 ~~l~~~d~~-g~~--------------~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 92 LGLLVVQTD-GTF--------------EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp TEEEEEETT-SCE--------------EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred CCEEEEeCC-CCE--------------EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeE
Confidence 579999988 651 111 11 1123467899999886 4444433 356
Q ss_pred EEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe----cCCCcEEEEEeCCCcEEEEeCC-CCc---
Q 039790 339 LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC----QWLTTRLASASLDGTVKIWDDR-KST--- 410 (1395)
Q Consensus 339 i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs----pdg~~~LaSgs~Dg~IrIWDl~-sg~--- 410 (1395)
.+++.. +. ...+..+......++|+ +++..++++...++.|.+||+. .+.
T Consensus 156 ~~~~~~--g~--------------------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 156 YCFTTD--GQ--------------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp EEECTT--SC--------------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred EEECCC--CC--------------------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence 655532 11 12222234457889999 9883344555678999999976 453
Q ss_pred --eeEEecCCC-CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccc
Q 039790 411 --PLAVLRPYD-GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLED 487 (1395)
Q Consensus 411 --~l~tl~~h~-~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~ 487 (1395)
.+..+.++. + .+..++++ ++|.++++.. .++.|.+||..++ +.+..+..+...+
T Consensus 214 ~~~~~~~~~~~~~-~p~~i~~d----~~G~l~v~~~-~~~~i~~~d~~~g------------~~~~~~~~~~~~~----- 270 (314)
T 1pjx_A 214 KKVWGHIPGTHEG-GADGMDFD----EDNNLLVANW-GSSHIEVFGPDGG------------QPKMRIRCPFEKP----- 270 (314)
T ss_dssp EEEEEECCCCSSC-EEEEEEEB----TTCCEEEEEE-TTTEEEEECTTCB------------SCSEEEECSSSCE-----
T ss_pred ceEEEECCCCCCC-CCCceEEC----CCCCEEEEEc-CCCEEEEEcCCCC------------cEeEEEeCCCCCc-----
Confidence 233444443 4 68899998 8998877755 6889999998766 5555565443222
Q ss_pred cccceEEEEeCCCC-EEEEEeCCCeEEEEEcCC
Q 039790 488 AFFNQVVALNRAGL-FLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 488 ~~~~~~l~~S~dg~-~LaSgs~Dg~I~iWdl~~ 519 (1395)
..++++++|. +++++..++.|+.|++..
T Consensus 271 ----~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 271 ----SNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ----EEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ----eeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 3588899999 555666778999999865
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.37 E-value=2.4e-09 Score=134.38 Aligned_cols=251 Identities=8% Similarity=0.065 Sum_probs=165.2
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECC--CC-ceEEeccCCCCeEEEEEee----CCCCEEEEEEC-CCcEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNII--TA-LRSLLRGHTQRVTDMAFFA----EDVHLLASASV-DGRFFIWNIT 288 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~--~~-~~~~l~~H~~~V~slaf~s----~dg~~LaSgs~-DgtV~IWdl~ 288 (1395)
..+.++.|++||+++++++.|+.|.+||+. ++ .+..+... .....++| + +||+++++++. +++|.|||..
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~-s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIET-SKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEE-CCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEE-ccccCCCCCEEEEEEccCCeEEEEECC
Confidence 356789999999999999999999999995 54 34444432 24678999 6 69988777665 5899999988
Q ss_pred CCCCCCCCcccccceEEEEEEecC--------CCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILAD--------GDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~--------~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+.+ .+..+.+.+. .+..+..+..++++..+++... .+.+.+++.......
T Consensus 275 t~~-----------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~---------- 333 (567)
T 1qks_A 275 TLE-----------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL---------- 333 (567)
T ss_dssp TCC-----------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE----------
T ss_pred CCc-----------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc----------
Confidence 766 2222222110 0224456777777665554443 466777765432110
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC-----CCCCCeeEEE-EeecCC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP-----YDGHPVNCVT-FLIGPH 433 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~-----h~~~~V~sV~-fs~~~~ 433 (1395)
.+..+ .......++.|+++|..+++++..++.|.+||+.+++.+..+.. |-+ ..+. +.
T Consensus 334 --------~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg---~g~~~~~---- 397 (567)
T 1qks_A 334 --------KTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG---RGANFVH---- 397 (567)
T ss_dssp --------EEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT---TCEEEEE----
T ss_pred --------eeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc---cceeeEC----
Confidence 01222 24456788999999944445555789999999999988877654 322 2333 44
Q ss_pred CCCcEEE-EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeC----
Q 039790 434 PQHIVLI-TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAK---- 508 (1395)
Q Consensus 434 pdg~~L~-s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~---- 508 (1395)
|++..+. ++.-.+++|.+||..+.. .....|+.++++....... + .+..+|++++|.....
T Consensus 398 p~~g~v~~t~~~g~~~Vsvid~~~~~-----~~~~~~kvv~~i~~~g~g~------~---~i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 398 PTFGPVWATSHMGDDSVALIGTDPEG-----HPDNAWKILDSFPALGGGS------L---FIKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTT-----CTTTBTSEEEEEECSCSCC------C---CEECCTTCSEEEEECTTCSS
T ss_pred CCCCcEEEeCCCCCCeEEEecCCCCC-----CccccCEEEEEEecCCCCC------E---EEEeCCCCCeEEEecCCCCC
Confidence 7755444 433246899999998741 0123478999998754221 1 2678899998887663
Q ss_pred ---CCeEEEEEcCCC
Q 039790 509 ---KNAIYAIHMDYG 520 (1395)
Q Consensus 509 ---Dg~I~iWdl~~g 520 (1395)
.+.|.++|+.+.
T Consensus 464 ~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 464 AEISGSVAVFDIKAM 478 (567)
T ss_dssp HHHHTCEEEEEGGGC
T ss_pred cccCceEEEEECCcc
Confidence 358999999864
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.37 E-value=4.4e-11 Score=139.82 Aligned_cols=222 Identities=10% Similarity=0.084 Sum_probs=142.4
Q ss_pred CCEEEEEEecCCCEEEEEE---------cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---C--cE
Q 039790 217 GLVLGRQIAVNRNYICYGL---------KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---G--RF 282 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs---------~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---g--tV 282 (1395)
..+....| ||++|++.. .++.|.+||+.++....+ ..+..++| ++||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~-SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRI-SPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEE-CTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEE-CCCCCEEEEEEeccCCCcceE
Confidence 45667777 899888753 267899999999876555 56889999 9999999988764 2 38
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC---------------------------
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--------------------------- 335 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--------------------------- 335 (1395)
++||+.+++ ...+.... . +..+.|+|++..|+.++.+
T Consensus 88 ~~~~~~~g~--------------~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (347)
T 2gop_A 88 WVADLETLS--------------SKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK 151 (347)
T ss_dssp EEEETTTTE--------------EEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CE
T ss_pred EEEECCCCc--------------eEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence 888888765 12222222 2 7789999999988887753
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC-------cEEEEeCCC
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG-------TVKIWDDRK 408 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg-------~IrIWDl~s 408 (1395)
..+.+|+... +. .+..+.. . .+..++|+||| ++++++.++ ...||.+.+
T Consensus 152 ~~l~~~d~~~-~~-------------------~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~ 207 (347)
T 2gop_A 152 TTFWIFDTES-EE-------------------VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWED 207 (347)
T ss_dssp EEEEEEETTT-TE-------------------EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred ceEEEEECCC-Ce-------------------EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCC
Confidence 2233333211 10 0123333 3 78899999997 666666542 344554445
Q ss_pred CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC-------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc
Q 039790 409 STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN-------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA 481 (1395)
Q Consensus 409 g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D-------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~ 481 (1395)
++ +..+..+ . .+.++ + |||++|+.++..+ ..|.+|| ++ ++...+..+...
T Consensus 208 ~~-~~~l~~~-~-~~~~~--s----pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~------------~~~~l~~~~~~~ 264 (347)
T 2gop_A 208 GK-EEKMFEK-V-SFYAV--D----SDGERILLYGKPEKKYMSEHNKLYIYD--GK------------EVMGILDEVDRG 264 (347)
T ss_dssp TE-EEEEEEE-E-SEEEE--E----ECSSCEEEEECCSSSCCCSSCEEEEEC--SS------------CEEESSTTCCSE
T ss_pred Cc-eEEeccC-c-ceeeE--C----CCCCEEEEEEccccCCccccceEEEEC--CC------------ceEeccccCCcc
Confidence 54 3444444 4 56555 7 8999988766322 4677887 44 332222222211
Q ss_pred cccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 482 ELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 482 i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+...+.|+ || ++++++.++.++|| +..
T Consensus 265 --------~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 265 --------VGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp --------EEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred --------cCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 11137788 88 88999999999999 874
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.36 E-value=4.5e-11 Score=134.39 Aligned_cols=238 Identities=9% Similarity=-0.001 Sum_probs=157.8
Q ss_pred CEEEEEEecCCCEEE-EEEcCCeEEEEECCCCceEEe-ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 218 LVLGRQIAVNRNYIC-YGLKLGNIRILNIITALRSLL-RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 218 ~V~~va~Spdg~~La-sGs~DG~IrIWd~~~~~~~~l-~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
...+++++++|++++ +...++.|.+||..++....+ ..+...+.+|+| .++++++++.. ++.|++||...+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~-~~~g~l~v~~~-~~~i~~~d~~~~~~--- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAV-DGAGTVYVTDF-NNRVVTLAAGSNNQ--- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEE-CTTCCEEEEET-TTEEEEECTTCSCC---
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEE-CCCCCEEEEcC-CCEEEEEeCCCceE---
Confidence 678999999999777 447789999999877654333 234457889999 78888766666 88999999876541
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
..+..........+++++++. ++++. .++.+.+|+...... ......
T Consensus 100 -----------~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~--------------------~~~~~~ 147 (270)
T 1rwi_B 100 -----------TVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ--------------------TVLPFT 147 (270)
T ss_dssp -----------EECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSC--------------------EECCCC
T ss_pred -----------eeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCcee--------------------Eeeccc
Confidence 011112224567899999886 55554 456777774322110 011112
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
....+.+++++++| +++++...++.|.+||...+........+.. .+.+|+++ ++|..+++ ...++.|.+||.
T Consensus 148 ~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~~i~~d----~~g~l~v~-~~~~~~v~~~~~ 220 (270)
T 1rwi_B 148 GLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVD----EAGTVYVT-EHNTNQVVKLLA 220 (270)
T ss_dssp SCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEEC----TTCCEEEE-ETTTSCEEEECT
T ss_pred cCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEeecccCCC-CceEEEEC----CCCCEEEE-ECCCCcEEEEcC
Confidence 23467889999988 7777777789999999877665443333333 78999998 88866665 447889999998
Q ss_pred CCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 455 AEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 455 ~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
... .... +.... . .....++++++|.++++...++.|++|++...
T Consensus 221 ~~~------------~~~~-~~~~~-~-------~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 221 GST------------TSTV-LPFTG-L-------NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TCS------------CCEE-CCCCS-C-------SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCC------------ccee-eccCC-C-------CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 654 2111 11110 0 11235889999999999999999999998653
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.36 E-value=7.3e-11 Score=137.88 Aligned_cols=221 Identities=11% Similarity=0.086 Sum_probs=143.5
Q ss_pred CCEEEEEEecCCCEEEEEEcC---C--eEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC------------
Q 039790 217 GLVLGRQIAVNRNYICYGLKL---G--NIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD------------ 279 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~D---G--~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D------------ 279 (1395)
..+.++.|+|||++|++++.+ + .|.+||+.++....+..+.. +.+++| ++||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~w-spdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEW-NEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEE-CTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeE-CCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457789999999999988754 3 48888988887655555555 999999 9999998888743
Q ss_pred ---------------CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC--------
Q 039790 280 ---------------GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN-------- 336 (1395)
Q Consensus 280 ---------------gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-------- 336 (1395)
..|++||+.+++ .+..+.. . .+..+.|+|++ .++++..++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~-----------~~~~l~~----~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~ 199 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEE-----------VIEEFEK----P-RFSSGIWHRDK-IVVNVPHREIIPQYFKF 199 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTE-----------EEEEEEE----E-TTCEEEEETTE-EEEEEECCCSSCCSSCC
T ss_pred cceeecCcccccCccceEEEEECCCCe-----------EEeeecC----C-CcccccCCCCe-EEEEEeccccccccccc
Confidence 579999998765 1112222 2 67789999999 444443321
Q ss_pred -eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC--------CcEEEEeCC
Q 039790 337 -RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD--------GTVKIWDDR 407 (1395)
Q Consensus 337 -~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D--------g~IrIWDl~ 407 (1395)
.+..++ .+. ...+..+ ..+..+ +||| ++|+.++.+ ..|.+||
T Consensus 200 ~~l~~~d---~~~--------------------~~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d-- 250 (347)
T 2gop_A 200 WDIYIWE---DGK--------------------EEKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD-- 250 (347)
T ss_dssp EEEEEEE---TTE--------------------EEEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--
T ss_pred ccEEEeC---CCc--------------------eEEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--
Confidence 233333 111 2223334 455554 9998 677766644 3688888
Q ss_pred CCceeEEecCCCCCCeeE-EEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccc
Q 039790 408 KSTPLAVLRPYDGHPVNC-VTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLE 486 (1395)
Q Consensus 408 sg~~l~tl~~h~~~~V~s-V~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~ 486 (1395)
+++....+.+|.. .+.. +.|+ || ++++++ .++.++|| +.++ +....+. +...+
T Consensus 251 ~~~~~~l~~~~~~-~~~~~~~~s-----dg-~~~~~~-~~~~~~l~-~~~g------------~~~~~~~-~~~~v---- 304 (347)
T 2gop_A 251 GKEVMGILDEVDR-GVGQAKIKD-----GK-VYFTLF-EEGSVNLY-IWDG------------EIKPIAK-GRHWI---- 304 (347)
T ss_dssp SSCEEESSTTCCS-EEEEEEEET-----TE-EEEEEE-ETTEEEEE-EESS------------SEEEEEC-SSSEE----
T ss_pred CCceEeccccCCc-ccCCccEEc-----Cc-EEEEEe-cCCcEEEE-EcCC------------ceEEEec-CCCeE----
Confidence 6665544555555 7886 8884 66 666655 89999999 8754 4433332 22222
Q ss_pred ccccceEEEEeCCCCEEEEEeCCCeE-EEEEcC
Q 039790 487 DAFFNQVVALNRAGLFLLANAKKNAI-YAIHMD 518 (1395)
Q Consensus 487 ~~~~~~~l~~S~dg~~LaSgs~Dg~I-~iWdl~ 518 (1395)
..+.|++ .++++++.++.. .||.++
T Consensus 305 -----~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 305 -----MGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -----EEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred -----EeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 2477888 566666666654 777775
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.36 E-value=1.8e-11 Score=158.15 Aligned_cols=246 Identities=8% Similarity=-0.003 Sum_probs=159.9
Q ss_pred CCCCCEEEEEEecCCCEEEEEE-----cCCeEEEEECCCCceEEeccCCCCe--EEEEEeeCCCCEEEEEECCCc-----
Q 039790 214 SDPGLVLGRQIAVNRNYICYGL-----KLGNIRILNIITALRSLLRGHTQRV--TDMAFFAEDVHLLASASVDGR----- 281 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs-----~DG~IrIWd~~~~~~~~l~~H~~~V--~slaf~s~dg~~LaSgs~Dgt----- 281 (1395)
+|...+.+++|||||++||++. .+..|++||+.++.... ..+...+ ..++| ++||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~w-spDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKW-TPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEE-CTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEE-ecCCCEEEEEEecCCCCCcc
Confidence 4555788999999999999553 34689999999986531 1122223 68999 999999999999876
Q ss_pred --------EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC----eEEEEEcCCCCcc
Q 039790 282 --------FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN----RILKIDSNRVGKG 349 (1395)
Q Consensus 282 --------V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~----~ii~~d~~~~~~~ 349 (1395)
|++|++.++.... ..+.....+...+..+.|+|+|..+++++.++ .+.+++. ..+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~----------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~-~~~~- 263 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKD----------TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP-GEKD- 263 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGC----------EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT-TCSS-
T ss_pred ccCCCCCEEEEEECCCCchhc----------eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC-CCCc-
Confidence 9999998875110 01111122335677899999999888887665 3333321 1111
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCce--eEEecCCC-CCCe
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASAS---LDGTVKIWDDRKSTP--LAVLRPYD-GHPV 423 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs---~Dg~IrIWDl~sg~~--l~tl~~h~-~~~V 423 (1395)
...+..+...+....| ++|. +++.+. .++.|.+||+.++.. ...+..|. ...+
T Consensus 264 -------------------~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 264 -------------------FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp -------------------CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred -------------------eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 2334445566666666 6774 555554 258899999988753 34444332 3368
Q ss_pred eEEEEeecCCCCCcEEEEEecCCCeEEEEECC-CCCCCCCCCCcccccEEEEEeccC-cccccccccccceEEEEeCCCC
Q 039790 424 NCVTFLIGPHPQHIVLITGGPLNRELKIWASA-EEEGWLLPSDIESWKCTQTLELKS-SAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 424 ~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~-tg~~~~~~~~~~~~~~l~tl~~h~-~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
..++|+ ++.++++.. .|+..+||.+. .+ ..+..+..+. ..+ ..+.+++++.
T Consensus 323 ~~~~~~-----~~~lv~~~~-~dg~~~l~~~~~~g------------~~~~~l~~~~~~~v---------~~~~~s~d~~ 375 (695)
T 2bkl_A 323 LSVSIV-----GGHLSLEYL-KDATSEVRVATLKG------------KPVRTVQLPGVGAA---------SNLMGLEDLD 375 (695)
T ss_dssp EEEEEE-----TTEEEEEEE-ETTEEEEEEEETTC------------CEEEECCCSSSSEE---------CCCBSCTTCS
T ss_pred EEEEEE-----CCEEEEEEE-ECCEEEEEEEeCCC------------CeeEEecCCCCeEE---------EEeecCCCCC
Confidence 889996 455666544 89999988765 23 4555555442 211 1356678887
Q ss_pred EEEEEe----CCCeEEEEEcCCCC
Q 039790 502 FLLANA----KKNAIYAIHMDYGP 521 (1395)
Q Consensus 502 ~LaSgs----~Dg~I~iWdl~~g~ 521 (1395)
.|+... ..++|++||+.+++
T Consensus 376 ~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 376 DAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEEcCCCCCCEEEEEECCCCc
Confidence 666332 35789999998764
No 184
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.36 E-value=1.4e-10 Score=135.49 Aligned_cols=202 Identities=15% Similarity=0.087 Sum_probs=143.5
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCC--ceEEe---------ccCCCCeEEEEEeeC-CCCEEEEEE-CCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITA--LRSLL---------RGHTQRVTDMAFFAE-DVHLLASAS-VDG 280 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~--~~~~l---------~~H~~~V~slaf~s~-dg~~LaSgs-~Dg 280 (1395)
++.....+++|+++|+++++...++.|++||.... .+..+ .++-....+|+| .+ ++.++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~-~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV-EPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE-CTTTCCEEEEECSSCC
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE-eCCCCeEEEEeCCCCC
Confidence 34567899999999998888888999999998776 44544 345567999999 77 888888886 699
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecC-------CCCCccEEEEeCCCCeEEEEEeCC-eEEEEEcCCCCccccc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILAD-------GDSVHPRVCWHPHKQEILMLAIGN-RILKIDSNRVGKGERF 352 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~-------~~~~v~~v~~sp~~~~lla~g~~~-~ii~~d~~~~~~~~~~ 352 (1395)
.|++|| .++. .+..+...+. .-.....++++++++.++++...+ .|.+|+.. .++.
T Consensus 167 ~I~~~~-~~g~-----------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~-~G~~--- 230 (329)
T 3fvz_A 167 RIVQFS-PSGK-----------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD-TKEF--- 230 (329)
T ss_dssp EEEEEC-TTSC-----------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT-TCCE---
T ss_pred eEEEEc-CCCC-----------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC-CCcE---
Confidence 999999 4454 1222211111 112356899999967777777654 56666543 2221
Q ss_pred cCCCCCccCccccccceEEE--cccCCCeEEEEEecCCCcEEEEE-------eCCCcEEEEeCCCCceeEEec---CCCC
Q 039790 353 SAEEPLKCPVDELINGVQLV--GKHDGEITELSMCQWLTTRLASA-------SLDGTVKIWDDRKSTPLAVLR---PYDG 420 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l--~~h~~~V~slafspdg~~~LaSg-------s~Dg~IrIWDl~sg~~l~tl~---~h~~ 420 (1395)
+..+ ..+...+..++|+| + ..+++. +.+.+|++||..+++.+..+. ++..
T Consensus 231 ----------------~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~ 292 (329)
T 3fvz_A 231 ----------------VREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD 292 (329)
T ss_dssp ----------------EEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS
T ss_pred ----------------EEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC
Confidence 2223 34667889999999 4 344443 334589999999999999884 5555
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.+..|+|+ ++|..+++ ...++.|++|++..
T Consensus 293 -~p~~ia~~----~dG~lyva-d~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 293 -MPHDIVAS----EDGTVYIG-DAHTNTVWKFTLTE 322 (329)
T ss_dssp -SEEEEEEC----TTSEEEEE-ESSSCCEEEEEEEE
T ss_pred -CeeEEEEC----CCCCEEEE-ECCCCEEEEEeCCc
Confidence 79999999 99955555 55899999999754
No 185
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.35 E-value=2.3e-10 Score=130.16 Aligned_cols=197 Identities=9% Similarity=0.063 Sum_probs=140.2
Q ss_pred CCCCEEEEEEe-cCCCEEEEEEc-CCeEEEEECCCCceEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 215 DPGLVLGRQIA-VNRNYICYGLK-LGNIRILNIITALRSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 215 h~~~V~~va~S-pdg~~LasGs~-DG~IrIWd~~~~~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
|...+.++++. ++++++++... ++.|++||.....+..+. .+...+.+|+| .++++++++...++.|++||.. +.
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTV-DNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEE-CTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEE-eCCCCEEEEECCCCEEEEEcCC-CC
Confidence 44678899995 67776666643 899999996554555453 34567899999 8899988888888999999964 33
Q ss_pred CCCCCcccccceEEEEEEec--CCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 292 DEEDKPQILGKIVVAIQILA--DGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~--~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
.+..+. .+......+++++++. ++++. .++.|.+|+... ..
T Consensus 153 --------------~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g--~~------------------- 196 (286)
T 1q7f_A 153 --------------VLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEG--QY------------------- 196 (286)
T ss_dssp --------------EEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTC--CE-------------------
T ss_pred --------------EEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCC--CE-------------------
Confidence 112222 2334567899999886 55554 467787777521 10
Q ss_pred eEEEcc--cCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEec
Q 039790 369 VQLVGK--HDGEITELSMCQWLTTRLASASLDG-TVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 369 ~~~l~~--h~~~V~slafspdg~~~LaSgs~Dg-~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
+..+.. +...+..|+++++| +++++...++ .|++||. +++.+..+..+.. ..+.+++|+ ++|+++++ +
T Consensus 197 ~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~----~~g~l~vs-~- 268 (286)
T 1q7f_A 197 LRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM----DDGSVVLA-S- 268 (286)
T ss_dssp EEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE----TTTEEEEE-E-
T ss_pred EEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC----CCCcEEEE-C-
Confidence 233332 33678999999998 7888888776 9999994 6777777765542 147899999 99986666 5
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
.|++|++|++...
T Consensus 269 ~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 269 KDYRLYIYRYVQL 281 (286)
T ss_dssp TTTEEEEEECSCC
T ss_pred CCCeEEEEEcccc
Confidence 6999999998653
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.33 E-value=1.6e-09 Score=135.93 Aligned_cols=325 Identities=10% Similarity=0.040 Sum_probs=201.1
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC--CCCCCCCCcccccc
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT--EGPDEEDKPQILGK 302 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~--tg~~~~~~~~~~~~ 302 (1395)
+.+.++++...++.|.+||..++.+. .+. ....+..+.| ++||++|++++.|+.|.+||+. +++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~-SpDGr~lyv~~~dg~V~viD~~~~t~~----------- 231 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRL-SASGRYLFVIGRDGKVNMIDLWMKEPT----------- 231 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEE-CTTSCEEEEEETTSEEEEEETTSSSCC-----------
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEE-CCCCCEEEEEcCCCeEEEEECCCCCCc-----------
Confidence 44556677778999999999998544 443 3446789999 9999999999999999999996 544
Q ss_pred eEEEEEEecCCCCCccEEEEe----CCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEc----
Q 039790 303 IVVAIQILADGDSVHPRVCWH----PHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG---- 373 (1395)
Q Consensus 303 ~i~~l~~~~~~~~~v~~v~~s----p~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~---- 373 (1395)
.+..+ .. ......++|+ |++++++++... +.+.++|...... +..+.
T Consensus 232 ~v~~i---~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~--------------------~~~i~~~~~ 287 (567)
T 1qks_A 232 TVAEI---KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP--------------------KKIQSTRGM 287 (567)
T ss_dssp EEEEE---EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE--------------------EEEEECCEE
T ss_pred EeEEE---ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE--------------------EEEEecccc
Confidence 22222 22 2234578999 699988888775 6666666433211 11111
Q ss_pred ------ccCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 374 ------KHDG-EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 374 ------~h~~-~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
.|.. .+..+.++++++.++++...+|.|.++|......+....-..+.....+.|+ |+|++++++...+
T Consensus 288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~----pdgr~~~va~~~s 363 (567)
T 1qks_A 288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD----GSHRYFITAANAR 363 (567)
T ss_dssp CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC----TTSCEEEEEEGGG
T ss_pred ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceEC----CCCCEEEEEeCCC
Confidence 1223 6788999998867777777889999999887643332221122367889999 9999998877678
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEec-cCcccccccccccceEEEEeCC-CCEEEEEe-CCCeEEEEEcCCCCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRA-GLFLLANA-KKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs-~Dg~I~iWdl~~g~~~ 523 (1395)
+.|.+||+.++ +.+..+.. .... +.... ...++++ |.+++++. .++.|.+|+...+...
T Consensus 364 n~V~ViD~~t~------------kl~~~i~vgg~~P----hpg~g--~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 364 NKLVVIDTKEG------------KLVAIEDTGGQTP----HPGRG--ANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp TEEEEEETTTT------------EEEEEEECSSSSB----CCTTC--EEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred CeEEEEECCCC------------cEEEEEeccCcCC----CCccc--eeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 99999999988 77777654 2111 10000 1235777 44444443 5689999998864321
Q ss_pred CCcceeeeeeeecc--ccE-EEEecCCCCcC-------cC--CCCeEEEEEcCCCce-------eeec----------cc
Q 039790 524 ASTRMDYIAEFTVT--MPI-LSLTGTTTDAS-------PD--GEHIVQIYCVQTQAI-------QQYA----------LD 574 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~--~~i-ls~~~~~~d~~-------~s--~dg~V~lWdv~t~~i-------~~~~----------~~ 574 (1395)
. ..++.+...... .+. +.+...+ ..+ ++ ....|.|||+.+.++ .... ..
T Consensus 426 ~-~~~kvv~~i~~~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 503 (567)
T 1qks_A 426 D-NAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQP 503 (567)
T ss_dssp T-TBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCC
T ss_pred c-ccCEEEEEEecCCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCc
Confidence 1 112233333221 111 1111111 000 11 135899999998721 1111 12
Q ss_pred ceEEecCCCCC--eecc---c-CCCceEEEeecCCCCcceeec
Q 039790 575 LSQCLPPPLEN--AELE---K-TDSNATRAFDVANPDGSASLE 611 (1395)
Q Consensus 575 ~~~cl~~s~d~--l~~~---~-sd~~v~~iWD~~tg~~~~~l~ 611 (1395)
....+.+++++ +-++ + .+.+.+.++|..|++..+.+.
T Consensus 504 ~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 504 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 34566677765 2222 1 133444589999999877777
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.29 E-value=4.9e-09 Score=118.94 Aligned_cols=238 Identities=9% Similarity=0.018 Sum_probs=163.4
Q ss_pred CCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
.+...+.++++.++|+++++...++.|.+||.. +....+. .+...+.+|++ .+++.++++...++.|..||.. +.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTI-SSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEE-CCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 455789999999999977776668999999998 6544332 35578999999 7889888887778899999976 33
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
+..+. .......+..+++++++. ++++. .++.+.+++. . +... ..
T Consensus 89 ------------~~~~~-~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~-g~~~------------------~~ 134 (299)
T 2z2n_A 89 ------------IKEYT-LPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-D-GKIR------------------EY 134 (299)
T ss_dssp ------------EEEEE-CSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-T-CCEE------------------EE
T ss_pred ------------EEEEe-CCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-C-CCEE------------------Ee
Confidence 01111 122344567889998875 44444 4667777765 1 1110 11
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
....+...+.++++.++| +++++...++.|.+||. +++.... +..+.. .+.++++. ++|..+++.. .++.|
T Consensus 135 ~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~~----~~g~l~v~~~-~~~~i 206 (299)
T 2z2n_A 135 ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPTPAS-GPVGITKG----NDDALWFVEI-IGNKI 206 (299)
T ss_dssp ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEEC----TTSSEEEEET-TTTEE
T ss_pred cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCC-cceeEEEC----CCCCEEEEcc-CCceE
Confidence 122244578999999998 77777777889999998 7765443 333333 68999998 8888766643 68899
Q ss_pred EEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 450 KIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 450 ~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.+||. ++ .. ..+...... .....++++++|.++++...++.|+.|+.
T Consensus 207 ~~~~~-~g------------~~-~~~~~~~~~-------~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 207 GRITT-SG------------EI-TEFKIPTPN-------ARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEECT-TC------------CE-EEEECSSTT-------CCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EEECC-CC------------cE-EEEECCCCC-------CCceeEEECCCCCEEEeccCCceEEEECC
Confidence 99998 55 32 223222110 11235888999998888778899999997
No 188
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.29 E-value=1.2e-09 Score=129.67 Aligned_cols=281 Identities=9% Similarity=0.000 Sum_probs=167.9
Q ss_pred CCCEEEEEE------cCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEEC----------CCcEEEEECCC
Q 039790 227 NRNYICYGL------KLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASV----------DGRFFIWNITE 289 (1395)
Q Consensus 227 dg~~LasGs------~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~----------DgtV~IWdl~t 289 (1395)
+++++++.. .|+.|++||..++. +..+..+..+ .++| ++|+++|++++. +++|.+||+.+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~-spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQV-SNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEE-CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEE-CCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 455555543 37899999998875 4455555554 8999 999999998873 67899999987
Q ss_pred CCCCCCCcccccceEEEEEEecC---CCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 290 GPDEEDKPQILGKIVVAIQILAD---GDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~---~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
++ .+..+.+... +......++|+|++++++++..+ +.+.+||.... +.
T Consensus 91 ~~-----------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~--------------- 143 (361)
T 2oiz_A 91 LT-----------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DY--------------- 143 (361)
T ss_dssp CC-----------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EE---------------
T ss_pred Cc-----------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cE---------------
Confidence 76 2333333211 22446679999999999888764 56777765432 10
Q ss_pred cccceEE-EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceeEE------ecCCCCCCeeEEEEeecCCCCC
Q 039790 365 LINGVQL-VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STPLAV------LRPYDGHPVNCVTFLIGPHPQH 436 (1395)
Q Consensus 365 ~~~~~~~-l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~l~t------l~~h~~~~V~sV~fs~~~~pdg 436 (1395)
+.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++.... +..+.. + ..+.++ +++
T Consensus 144 ----~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~----~~g 211 (361)
T 2oiz_A 144 ----VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD-P-IFIAPA----LDK 211 (361)
T ss_dssp ----EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS-C-BCSCCE----ECS
T ss_pred ----EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC-c-eEEEec----ccC
Confidence 222 22 22 2234667888767889999999999999865 555422 222222 2 233445 677
Q ss_pred cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccc-ccccceEEEEeCCCCEEEEEeC-------
Q 039790 437 IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLE-DAFFNQVVALNRAGLFLLANAK------- 508 (1395)
Q Consensus 437 ~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~-~~~~~~~l~~S~dg~~LaSgs~------- 508 (1395)
..++... .++.|.+||+... ....+..+........... ...-...++|++++.+++....
T Consensus 212 ~~~~~~~-~~~~v~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 212 DKAHFVS-YYGNVYSADFSGD----------EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SEEEEEB-TTSEEEEEECSSS----------SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred CEEEEEe-CCCeEEEEEecCC----------CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 7776655 7899999999754 1123333332211000000 0000113788999877665432
Q ss_pred ----CCeEEEEEcCCCCCCCCcceeeeeeeeccc-cEEEEecCCCCcC-cCCCCeEEEEEcCCC--cee
Q 039790 509 ----KNAIYAIHMDYGPNPASTRMDYIAEFTVTM-PILSLTGTTTDAS-PDGEHIVQIYCVQTQ--AIQ 569 (1395)
Q Consensus 509 ----Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~-~ils~~~~~~d~~-~s~dg~V~lWdv~t~--~i~ 569 (1395)
.+.|++||+.+++ .+..+.... ..+.|+... ..+ ...++.|.|||+.++ ++.
T Consensus 281 ~~~~~~~v~viD~~t~~--------~v~~i~~~~p~~ia~spdg-~~l~v~n~~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQ--------RVARIPGRDALSMTIDQQR-NLMLTLDGGNVNVYDISQPEPKLL 340 (361)
T ss_dssp TTCCCSEEEEEETTTTE--------EEEEEECTTCCEEEEETTT-TEEEEECSSCEEEEECSSSSCEEE
T ss_pred ccCCCceEEEEECCCCc--------EEEEEecCCeeEEEECCCC-CEEEEeCCCeEEEEECCCCcceee
Confidence 3589999987753 233332222 222333322 111 222388999999998 554
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.27 E-value=1.4e-10 Score=134.86 Aligned_cols=243 Identities=9% Similarity=0.014 Sum_probs=161.3
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
.|.++.|++++..++..+.++.+++| .......+.++...+.+++| .+++++++++..++.|++||..+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~i~~~d~~~~~------ 77 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNF-DRQGQLFLLDVFEGNIFKINPETKE------ 77 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEE-CTTSCEEEEETTTCEEEEECTTTCC------
T ss_pred ccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEE-CCCCCEEEEECCCCEEEEEeCCCCc------
Confidence 45667788888877777788999999 33355667777788899999 7899988888899999999998776
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-----eEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN-----RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~-----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
...+.......+..++|++++. +++++..+ .+.+|+.... .. ...+
T Consensus 78 --------~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~-~~-------------------~~~~ 128 (333)
T 2dg1_A 78 --------IKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGD-NL-------------------QDII 128 (333)
T ss_dssp --------EEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSC-SC-------------------EEEE
T ss_pred --------EEEEeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCC-EE-------------------EEEE
Confidence 1122223456688999999986 55555443 7777765321 10 1111
Q ss_pred c--ccCCCeEEEEEecCCCcEEEEEeC------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 373 G--KHDGEITELSMCQWLTTRLASASL------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 373 ~--~h~~~V~slafspdg~~~LaSgs~------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
. .+...+++++|+++| +++++... .+.|..||..+++...... +.. .+..++|+ ++|++|+.+.+
T Consensus 129 ~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~i~~~----~dg~~l~v~~~ 201 (333)
T 2dg1_A 129 EDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NIS-VANGIALS----TDEKVLWVTET 201 (333)
T ss_dssp CSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EES-SEEEEEEC----TTSSEEEEEEG
T ss_pred ccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCC-cccceEEC----CCCCEEEEEeC
Confidence 1 244579999999998 67666553 3567777766555443332 223 68899999 99987766665
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
.++.|.+||+.+.. ..+..+...... ..........++++++|.++++...++.|++|+..
T Consensus 202 ~~~~i~~~d~~~~g-----------~~~~~~~~~~~~--~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 202 TANRLHRIALEDDG-----------VTIQPFGATIPY--YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp GGTEEEEEEECTTS-----------SSEEEEEEEEEE--ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCCeEEEEEecCCC-----------cCcccccceEEE--ecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 78999999996420 111111100000 00000122358999999999988888999999873
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.27 E-value=9e-10 Score=142.68 Aligned_cols=200 Identities=8% Similarity=-0.058 Sum_probs=140.6
Q ss_pred EEEEEEecCCCEEEEEEcCCe----------------EEEEECCCCc---eEEecc--CCCCeEEEEEeeCCCCEEEEEE
Q 039790 219 VLGRQIAVNRNYICYGLKLGN----------------IRILNIITAL---RSLLRG--HTQRVTDMAFFAEDVHLLASAS 277 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~----------------IrIWd~~~~~---~~~l~~--H~~~V~slaf~s~dg~~LaSgs 277 (1395)
+.+++|+|||+.|++++.++. |++|++.++. ...+.. |...+..+.| ++||++|+.++
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~-SpDg~~l~~~~ 251 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL-SDDGRYVLLSI 251 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE-CTTSCEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE-cCCCCEEEEEE
Confidence 567889999999999998876 9999998874 233333 5667889999 99999988877
Q ss_pred C-----CCcEEEEECCC------CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC----eEEEEE
Q 039790 278 V-----DGRFFIWNITE------GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN----RILKID 342 (1395)
Q Consensus 278 ~-----DgtV~IWdl~t------g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~----~ii~~d 342 (1395)
. +..|++||+.+ +.. .+..+..+...+. ..|+++++.+++.+..+ .+++|+
T Consensus 252 ~~~~~~~~~l~~~d~~~~~~~~~~~~-------------~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 252 REGCDPVNRLWYCDLQQESNGITGIL-------------KWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp ECSSSSCCEEEEEEGGGSSSSSCSSC-------------CCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EccCCCccEEEEEECcccccccCCcc-------------ceEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEe
Confidence 5 56899999986 420 0111222223332 35888998888887644 477776
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcccCC--CeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCceeEEecCC
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDG--EITELSMCQWLTTRLASASLDGT--VKIWDDRKSTPLAVLRPY 418 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~--~V~slafspdg~~~LaSgs~Dg~--IrIWDl~sg~~l~tl~~h 418 (1395)
....... ....+..|.. .+.+++|++++ .++++...|+. |++||+.+|+.+..+..+
T Consensus 318 ~~~~~~~------------------~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~ 378 (710)
T 2xdw_A 318 FTDPEES------------------KWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGALLKIFPLE 378 (710)
T ss_dssp TTSCCGG------------------GCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCEEEEECCC
T ss_pred CCCCCcc------------------cceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCEEEecCCC
Confidence 5332100 0123333433 68889999665 78889988985 666787788888888888
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEec---CCCeEEEEECCCC
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGP---LNRELKIWASAEE 457 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl~tg 457 (1395)
.+ .|..+.++ +++..|+.+.+ ..++|.+||+.++
T Consensus 379 ~~-~v~~~~~s----~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 379 VG-SVVGYSGQ----KKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp SS-EEEEEECC----TTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred Cc-eEEEEecC----CCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 66 88999998 88876664332 3478999999887
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.26 E-value=1.1e-09 Score=124.86 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=155.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc-eEEeccCC-CCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 227 NRNYICYGLKLGNIRILNIITAL-RSLLRGHT-QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~-~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
.+++|++++.|+.|++||..+|+ +..+..+. ..+.++.+ .++|++|+ +.++.|+.||. +|+ .+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~-~pdG~ilv--s~~~~V~~~d~-~G~-----------~~ 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAA-TKAGEILF--SYSKGAKMITR-DGR-----------EL 68 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEE-CTTSCEEE--ECBSEEEEECT-TSC-----------EE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEE-CCCCCEEE--eCCCCEEEECC-CCC-----------EE
Confidence 46789999999999999998885 55666665 47899999 89999988 45778999998 676 22
Q ss_pred EEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEE
Q 039790 305 VAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELS 383 (1395)
Q Consensus 305 ~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~sla 383 (1395)
..+. ......+.++.+.+++..+++.+. .+.++.++. .++. . |...... ...++......++
T Consensus 69 W~~~--~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~-l-----------~~~~~~~-~~~~~~~~~~~v~ 131 (276)
T 3no2_A 69 WNIA--APAGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEV-L-----------SKTEFET-GIERPHAQFRQIN 131 (276)
T ss_dssp EEEE--CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCE-E-----------EEEEECC-SCSSGGGSCSCCE
T ss_pred EEEc--CCCCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCE-E-----------EEEeccC-CCCcccccccCce
Confidence 2222 122245667888999987776665 555655543 2221 0 0000000 0011223455667
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCC
Q 039790 384 MCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLP 463 (1395)
Q Consensus 384 fspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~ 463 (1395)
+.++| ++|++...++.|.+||.. |+.+.++..+. .+.++.+. ++|..+++++ .++.|..||..++
T Consensus 132 ~~~~G-~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~--~~~~~~~~----~~g~~~v~~~-~~~~v~~~d~~tG------ 196 (276)
T 3no2_A 132 KNKKG-NYLVPLFATSEVREIAPN-GQLLNSVKLSG--TPFSSAFL----DNGDCLVACG-DAHCFVQLNLESN------ 196 (276)
T ss_dssp ECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECSS--CCCEEEEC----TTSCEEEECB-TTSEEEEECTTTC------
T ss_pred ECCCC-CEEEEecCCCEEEEECCC-CCEEEEEECCC--CccceeEc----CCCCEEEEeC-CCCeEEEEeCcCC------
Confidence 88888 899999999999999987 99999998763 57788887 8999888755 7789999999888
Q ss_pred CCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe
Q 039790 464 SDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 464 ~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
+.+.++....... .. -.+...+...++|.++++..
T Consensus 197 ------~~~w~~~~~~~~~--~~-l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 197 ------RIVRRVNANDIEG--VQ-LFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp ------CEEEEEEGGGSBS--CC-CSEEEEEEECTTSCEEEEEE
T ss_pred ------cEEEEecCCCCCC--cc-ccccccceEcCCCCEEEEec
Confidence 7777776432110 01 12234577788999888874
No 192
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.22 E-value=2.9e-09 Score=128.56 Aligned_cols=253 Identities=11% Similarity=0.018 Sum_probs=166.2
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG--RFFIWNITEGPDEE 294 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~~~ 294 (1395)
....+++|+++|+++++...++.|++||..++.+..+........ ++| .+++++|+.+..++ .|++|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~-~~~g~~l~~~d~~~~~~I~~~d~~~~~~-- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAV-TKDKQRVYSIGWEGTHTVYVYMKASGWA-- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEE-CTTSSEEEEEBSSTTCEEEEEEGGGTTC--
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeE-ecCCCcEEEEecCCCceEEEEEcCCCce--
Confidence 568899999999988887778999999999887655544334444 999 89999999988876 788888876541
Q ss_pred CCcccccceEEEEEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 295 DKPQILGKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
...+..... .......++++++++.++++..++.+.+|+..... ...+. ... ..
T Consensus 207 ---------~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~~~~~--------------~~~-~~ 261 (409)
T 3hrp_A 207 ---------PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-VTLIK--------------QLE-LS 261 (409)
T ss_dssp ---------EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-EEEEE--------------ECC-CC
T ss_pred ---------eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-EEEEe--------------ccc-cc
Confidence 111111112 34556789999977778886666678888764321 00000 000 11
Q ss_pred ccCCCe--EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCC--------------CCCeeEEEEeecCCCCCc
Q 039790 374 KHDGEI--TELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYD--------------GHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 374 ~h~~~V--~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~--------------~~~V~sV~fs~~~~pdg~ 437 (1395)
++...- ..++|+|+++.++++-..+++|+.||.... +..+.++. -.....++|+ ++|.
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d----~dG~ 335 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVD----EDGN 335 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC----TTCC
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe----CCCC
Confidence 122222 289999965477777778899999997543 34443332 0158899998 9998
Q ss_pred EEEEEec-CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc-----cc-ccccceEEEEeCCCCEEEEEeCCC
Q 039790 438 VLITGGP-LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR-----LE-DAFFNQVVALNRAGLFLLANAKKN 510 (1395)
Q Consensus 438 ~L~s~Gs-~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~-----~~-~~~~~~~l~~S~dg~~LaSgs~Dg 510 (1395)
+++ +.. .++.|+.||+.++ . +.++.++...... .. .-.....++++++|.++++...++
T Consensus 336 lyv-ad~~~~~~I~~~~~~~G------------~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~ 401 (409)
T 3hrp_A 336 FYI-VDGFKGYCLRKLDILDG------------Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK 401 (409)
T ss_dssp EEE-EETTTTCEEEEEETTTT------------E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC
T ss_pred EEE-EeCCCCCEEEEEECCCC------------E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC
Confidence 554 466 7899999998765 3 3444443110000 00 001234689999999999999999
Q ss_pred eEEEEEcC
Q 039790 511 AIYAIHMD 518 (1395)
Q Consensus 511 ~I~iWdl~ 518 (1395)
.|+.++++
T Consensus 402 ~Ir~i~~e 409 (409)
T 3hrp_A 402 AIRKYAVE 409 (409)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99888763
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.22 E-value=5.8e-10 Score=144.11 Aligned_cols=233 Identities=12% Similarity=0.035 Sum_probs=147.0
Q ss_pred EecCCCEEEEEEcCC---eEEEE--ECCCCceEEe-------ccCCCCeEEEEEeeCCCCEEE-----EEECCCcEEEEE
Q 039790 224 IAVNRNYICYGLKLG---NIRIL--NIITALRSLL-------RGHTQRVTDMAFFAEDVHLLA-----SASVDGRFFIWN 286 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG---~IrIW--d~~~~~~~~l-------~~H~~~V~slaf~s~dg~~La-----Sgs~DgtV~IWd 286 (1395)
.+++|+++++...++ .-.|| +..++....+ .+|...+.+++| ++||++|+ +|+.+.+|++||
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~-SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAV-SWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEE-CTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEE-CCCCCEEEEEECCCCCceEEEEEEE
Confidence 358999999887654 23444 4445543333 246667999999 89999998 455567899999
Q ss_pred CCCCCCC-CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCe-------------EEEEEcCCCCccccc
Q 039790 287 ITEGPDE-EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNR-------------ILKIDSNRVGKGERF 352 (1395)
Q Consensus 287 l~tg~~~-~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~-------------ii~~d~~~~~~~~~~ 352 (1395)
+.+++.. .. ... ......++|+|++..|+.+..+.. +.+|+.......
T Consensus 154 l~tg~~~~~~-------------~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~--- 215 (695)
T 2bkl_A 154 VDSGEWSKVD-------------VIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK--- 215 (695)
T ss_dssp TTTCCBCSSC-------------CBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG---
T ss_pred CCCCCCcCCc-------------ccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh---
Confidence 9998722 00 001 111257899999998888877554 666655322110
Q ss_pred cCCCCCccCccccccceEEE--cccCCCeEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCceeEEecCCCCCCeeEE
Q 039790 353 SAEEPLKCPVDELINGVQLV--GKHDGEITELSMCQWLTTRLASASLDG----TVKIWDDRKSTPLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l--~~h~~~V~slafspdg~~~LaSgs~Dg----~IrIWDl~sg~~l~tl~~h~~~~V~sV 426 (1395)
...++ ..|...+..+.|+||| ++|+.++.++ .|++||..++. ...+..+.. .+...
T Consensus 216 ---------------~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~-~~~~~ 277 (695)
T 2bkl_A 216 ---------------DTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG-AKYEV 277 (695)
T ss_dssp ---------------CEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS-CCEEE
T ss_pred ---------------ceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC-ceEEE
Confidence 01222 2355688999999999 6777666655 67777766554 444555554 56677
Q ss_pred EEeecCCCCCcEEEEEec---CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC-cccccccccccceEEEEeCCCCE
Q 039790 427 TFLIGPHPQHIVLITGGP---LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS-SAELRLEDAFFNQVVALNRAGLF 502 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~-~~i~~~~~~~~~~~l~~S~dg~~ 502 (1395)
.|. +|. |+..+. .++.|.+||+.+++. ..| ..+..+. .. ....+.++ ++.+
T Consensus 278 ~~~-----~g~-l~~~s~~~~~~~~l~~~d~~~~~~-------~~~---~~l~~~~~~~--------~l~~~~~~-~~~l 332 (695)
T 2bkl_A 278 HAW-----KDR-FYVLTDEGAPRQRVFEVDPAKPAR-------ASW---KEIVPEDSSA--------SLLSVSIV-GGHL 332 (695)
T ss_dssp EEE-----TTE-EEEEECTTCTTCEEEEEBTTBCSG-------GGC---EEEECCCSSC--------EEEEEEEE-TTEE
T ss_pred Eec-----CCc-EEEEECCCCCCCEEEEEeCCCCCc-------cCC---eEEecCCCCC--------eEEEEEEE-CCEE
Confidence 774 566 554443 258999999977610 112 2233222 11 11235666 7788
Q ss_pred EEEEeCCCeEEEEEcC
Q 039790 503 LLANAKKNAIYAIHMD 518 (1395)
Q Consensus 503 LaSgs~Dg~I~iWdl~ 518 (1395)
+++...|+..+||.+.
T Consensus 333 v~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 333 SLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEEEEECCEEEEEEEe
Confidence 8999999998888776
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.20 E-value=2.8e-09 Score=124.50 Aligned_cols=237 Identities=16% Similarity=0.051 Sum_probs=157.1
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALR-SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~-~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
....++.+. +++++++...++.|.+||..++.. ..+. .......|+| ++++.++++...++.|.+||..+++
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~-~~~g~lyv~~~~~~~v~~iD~~t~~---- 116 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHF-LSDEKAYVTQIWDYRIFIINPKTYE---- 116 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEE-EETTEEEEEEBSCSEEEEEETTTTE----
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEE-eCCCeEEEEECCCCeEEEEECCCCe----
Confidence 345666663 344555556679999999998864 5553 4567899999 7778655555589999999999876
Q ss_pred CcccccceEEEEEEecC---CCCCccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 296 KPQILGKIVVAIQILAD---GDSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~---~~~~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
....+.. +. .......+++ +++.++++.. ++.+.+||...... ..
T Consensus 117 -------~~~~i~~-g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~--------------------~~ 166 (328)
T 3dsm_A 117 -------ITGYIEC-PDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV--------------------VD 166 (328)
T ss_dssp -------EEEEEEC-TTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE--------------------EE
T ss_pred -------EEEEEEc-CCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE--------------------EE
Confidence 1112221 11 0013445666 5667777764 67788887643211 12
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCC----------CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLD----------GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~D----------g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
.+. .......++++++| ++++++..+ +.|.+||..+++.+..+....+.....++|+ |++++|+
T Consensus 167 ~i~-~g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~----~d~~~ly 240 (328)
T 3dsm_A 167 ELT-IGIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN----GTRDTLY 240 (328)
T ss_dssp EEE-CSSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC----TTSCEEE
T ss_pred EEE-cCCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe----cCCCEEE
Confidence 222 12345688999998 666666554 7899999999988877764433378999999 9999988
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEE--EEeccCcccccccccccceEEEEeC-CCCEEEEE----eCCCeEE
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQ--TLELKSSAELRLEDAFFNQVVALNR-AGLFLLAN----AKKNAIY 513 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~--tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSg----s~Dg~I~ 513 (1395)
++. +.|.+||..++ +... .+.... .....+++++ +|.++++. ..++.|+
T Consensus 241 v~~---~~v~~~d~~t~------------~~~~~~~~~~~~---------~~p~gi~vdp~~g~lyva~~~~y~~~~~V~ 296 (328)
T 3dsm_A 241 WIN---NDIWRMPVEAD------------RVPVRPFLEFRD---------TKYYGLTVNPNNGEVYVADAIDYQQQGIVY 296 (328)
T ss_dssp EES---SSEEEEETTCS------------SCCSSCSBCCCS---------SCEEEEEECTTTCCEEEEECTTSSSEEEEE
T ss_pred EEc---cEEEEEECCCC------------ceeeeeeecCCC---------CceEEEEEcCCCCeEEEEcccccccCCEEE
Confidence 854 38999999876 2210 001001 1123588998 77788887 6789999
Q ss_pred EEEcCCCC
Q 039790 514 AIHMDYGP 521 (1395)
Q Consensus 514 iWdl~~g~ 521 (1395)
+|+.. |+
T Consensus 297 v~d~~-g~ 303 (328)
T 3dsm_A 297 RYSPQ-GK 303 (328)
T ss_dssp EECTT-CC
T ss_pred EECCC-CC
Confidence 99987 54
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.19 E-value=2.9e-08 Score=112.47 Aligned_cols=238 Identities=7% Similarity=-0.061 Sum_probs=157.6
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe--ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL--RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l--~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
+...+.+++++++|+++++...++.|..||.. +....+ ..+...+.+|++ .+++.++++...++.|.+||. ++..
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITE-GPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEE-CCCCCEEEEecCCceEEEECC-CCCE
Confidence 34678999999999988877778899999987 433333 234567999999 788888888777889999998 5541
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..+ ........+..+++++++. ++++.. .+.+.+++. .+... ...
T Consensus 132 ------------~~~-~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~--~g~~~------------------~~~ 177 (299)
T 2z2n_A 132 ------------REY-ELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE--SGDIT------------------EFK 177 (299)
T ss_dssp ------------EEE-ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT--TCCEE------------------EEE
T ss_pred ------------EEe-cCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC--CCcEE------------------Eee
Confidence 111 1122344567889998885 555544 567777765 22110 011
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
+..+...+.+++++++| +++++...++.|.+||. ++..... +..+.. .+.+++++ ++|..+++. ..++.|.
T Consensus 178 ~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~~----~~g~l~v~~-~~~~~i~ 249 (299)
T 2z2n_A 178 IPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEITEFKIPTPNA-RPHAITAG----AGIDLWFTE-WGANKIG 249 (299)
T ss_dssp CSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEEC----STTCEEEEE-TTTTEEE
T ss_pred CCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcEEEEECCCCCC-CceeEEEC----CCCCEEEec-cCCceEE
Confidence 22344568899999998 67777667889999998 6664332 233333 79999998 898866654 3678999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
+||. ++ . +..+...... .....+++ ++|.++++.. .+.|..++..++
T Consensus 250 ~~d~-~g------------~-~~~~~~~~~~-------~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 250 RLTS-NN------------I-IEEYPIQIKS-------AEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEET-TT------------E-EEEEECSSSS-------CCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EECC-CC------------c-eEEEeCCCCC-------CccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 9998 33 2 2333322110 11235777 8898888766 567777777653
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.18 E-value=9.8e-10 Score=143.08 Aligned_cols=246 Identities=7% Similarity=-0.033 Sum_probs=152.9
Q ss_pred CCCCEEEEEEecCCCEEEEEEcC-----CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc--------
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKL-----GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR-------- 281 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~D-----G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt-------- 281 (1395)
|...+.+++|||||++||+++.+ ..|++||+.++.......+...+..++| ++| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~w-spD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAW-LGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEE-STT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEE-ECC-CEEEEEEecCccccccccc
Confidence 33467889999999999998654 3699999999865443323333467899 899 88888887664
Q ss_pred ------EEEEECCCCCCCCCCcccccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeCC-----eEEEEEcCCCCc
Q 039790 282 ------FFIWNITEGPDEEDKPQILGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIGN-----RILKIDSNRVGK 348 (1395)
Q Consensus 282 ------V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~~-----~ii~~d~~~~~~ 348 (1395)
|++|++.++.... ..++.. +...+..+.|+|+|..++.++.++ .+.+|+.... .
T Consensus 239 ~~~~~~v~~~~lgt~~~~~------------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~-~ 305 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSAD------------QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG-K 305 (741)
T ss_dssp CCCCCEEEEEETTSCGGGC------------EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT-E
T ss_pred CCCCCEEEEEECCCCchhC------------EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC-C
Confidence 8999997764110 112222 223467899999999888877643 5555554321 0
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCC--ceeEEecCCCCCC
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL----DGTVKIWDDRKS--TPLAVLRPYDGHP 422 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~----Dg~IrIWDl~sg--~~l~tl~~h~~~~ 422 (1395)
. .....+..+...+.... +++| ..|+..+. ++.|.+||+.++ .....+..+.. .
T Consensus 306 ~-----------------~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~ 365 (741)
T 1yr2_A 306 I-----------------GPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-N 365 (741)
T ss_dssp E-----------------CCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-E
T ss_pred C-----------------cccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-e
Confidence 0 00123333444455543 4787 56666654 345999999875 33334444443 6
Q ss_pred eeEEEEeecCCCCCcEEEEEecCCCeEEEEECC-CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC
Q 039790 423 VNCVTFLIGPHPQHIVLITGGPLNRELKIWASA-EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 423 V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~-tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
+..+.|+ ++.++++. ..|+..+||.+. ++ ..+..+..+... ....+.+++++.
T Consensus 366 l~~~~~~-----~~~lv~~~-~~dg~~~l~~~~~~g------------~~~~~l~~~~~~--------~v~~~~~s~d~~ 419 (741)
T 1yr2_A 366 LESVGIA-----GNRLFASY-IHDAKSQVLAFDLDG------------KPAGAVSLPGIG--------SASGLSGRPGDR 419 (741)
T ss_dssp EEEEEEE-----BTEEEEEE-EETTEEEEEEEETTS------------CEEEECBCSSSC--------EEEEEECCBTCS
T ss_pred EEEEEEE-----CCEEEEEE-EECCEEEEEEEeCCC------------CceeeccCCCCe--------EEEEeecCCCCC
Confidence 7778885 44455554 489988888664 33 455555543211 112467788887
Q ss_pred EEEEE----eCCCeEEEEEcCCCC
Q 039790 502 FLLAN----AKKNAIYAIHMDYGP 521 (1395)
Q Consensus 502 ~LaSg----s~Dg~I~iWdl~~g~ 521 (1395)
.|+.. ...++|++||+.+++
T Consensus 420 ~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 420 HAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEcCCCCCCEEEEEECCCCc
Confidence 55522 245789999998754
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.15 E-value=3.3e-09 Score=121.38 Aligned_cols=204 Identities=12% Similarity=0.029 Sum_probs=137.5
Q ss_pred eeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc-----CCCCeEEEEEeeCCCCEEEEEEC-----
Q 039790 209 ITKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG-----HTQRVTDMAFFAEDVHLLASASV----- 278 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~-----H~~~V~slaf~s~dg~~LaSgs~----- 278 (1395)
+..+..+...+.+++|+++|+++++...++.|.+||..++....+.. ....+.+++| .++|+++++.+.
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~-d~~G~l~vtd~~~g~~~ 139 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCL-APDGSLWFSDPTYGIDK 139 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEE-CTTSCEEEEECSHHHHC
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEE-CCCCCEEEECCcccccc
Confidence 44556677889999999999988877777899999998775443321 1235778999 889998887431
Q ss_pred ------------CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCC
Q 039790 279 ------------DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNR 345 (1395)
Q Consensus 279 ------------DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~ 345 (1395)
.+.|+.|+.. +. +.....+......++|++++..+ ++.. ++.+.+|+...
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~-g~---------------~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 140 PEEGYGGEMELPGRWVFRLAPD-GT---------------LSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNA 202 (296)
T ss_dssp GGGSSCCCCCSSSCEEEEECTT-SC---------------EEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECS
T ss_pred ccccccccccCCCcEEEEECCC-CC---------------EEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECC
Confidence 2345555544 33 12223344556789999999877 4444 56788887642
Q ss_pred CCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeE
Q 039790 346 VGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNC 425 (1395)
Q Consensus 346 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~s 425 (1395)
.+.. ......+..+...+.+++|+++| +++++. ++.|.+||.. ++.+..+..+.+ +++
T Consensus 203 ~g~~----------------~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~ 260 (296)
T 3e5z_A 203 RGET----------------EYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSN 260 (296)
T ss_dssp SSCE----------------EEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCE
T ss_pred CCcC----------------cCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CCEEEEEECCCC--cee
Confidence 2210 00012223355667889999998 666655 8899999976 888888887764 899
Q ss_pred EEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 426 VTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 426 V~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
++|. .++++.|++++ .+ .|.-++..+.
T Consensus 261 ~~f~---~~d~~~L~v~t-~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 261 LCFG---GPEGRTLYMTV-ST-EFWSIETNVR 287 (296)
T ss_dssp EEEE---STTSCEEEEEE-TT-EEEEEECSCC
T ss_pred EEEE---CCCCCEEEEEc-CC-eEEEEEcccc
Confidence 9994 17888888866 44 4545555543
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.13 E-value=1.7e-08 Score=117.88 Aligned_cols=218 Identities=9% Similarity=-0.006 Sum_probs=148.4
Q ss_pred cCCeEEEEECCCCceEE-e-c-----cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 236 KLGNIRILNIITALRSL-L-R-----GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~~~~-l-~-----~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
.++.|.+||..++.... + . .......++++ . ++.++++...+++|.+||..+++ . +.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~-~-~~~lyv~~~~~~~v~viD~~t~~-----------~---~~ 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI-R-DGIGWIVVNNSHVIFAIDINTFK-----------E---VG 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE-E-TTEEEEEEGGGTEEEEEETTTCC-----------E---EE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE-E-CCEEEEEEcCCCEEEEEECcccE-----------E---EE
Confidence 47899999999986432 1 1 12245678888 3 45566666778999999999887 2 22
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEE-eCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc-----CCCeEEE
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLA-IGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH-----DGEITEL 382 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g-~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h-----~~~V~sl 382 (1395)
.+. .......+++++++ .++++. .++.+.+||...... ...+... ......+
T Consensus 79 ~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~--------------------~~~i~~g~~~~~~~~p~~i 136 (328)
T 3dsm_A 79 RIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEI--------------------TGYIECPDMDMESGSTEQM 136 (328)
T ss_dssp EEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEE--------------------EEEEECTTCCTTTCBCCCE
T ss_pred EcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeE--------------------EEEEEcCCccccCCCcceE
Confidence 222 23456688998887 677776 678888887643211 1111111 1145567
Q ss_pred EEecCCCcEEEEEe-CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC----------CeEEE
Q 039790 383 SMCQWLTTRLASAS-LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN----------RELKI 451 (1395)
Q Consensus 383 afspdg~~~LaSgs-~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D----------g~I~I 451 (1395)
++ . +++++++.. .+++|.+||..+++.+.++.... ....++++ ++|++++++. .+ +.|.+
T Consensus 137 ~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~--~p~~i~~~----~dG~l~v~~~-~~~~~~~~~~~~~~v~~ 207 (328)
T 3dsm_A 137 VQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGI--QPTSLVMD----KYNKMWTITD-GGYEGSPYGYEAPSLYR 207 (328)
T ss_dssp EE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSS--CBCCCEEC----TTSEEEEEBC-CBCTTCSSCBCCCEEEE
T ss_pred EE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--CccceEEc----CCCCEEEEEC-CCccCCccccCCceEEE
Confidence 77 3 425555544 48999999999999888887543 47889998 9998777644 43 78999
Q ss_pred EECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 452 WASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 452 WDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
||..++ +.+.++....+. ....+++++++.+|..... .|++||..+++.
T Consensus 208 id~~t~------------~v~~~~~~~~g~--------~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 208 IDAETF------------TVEKQFKFKLGD--------WPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EETTTT------------EEEEEEECCTTC--------CCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred EECCCC------------eEEEEEecCCCC--------CceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 999887 777777643221 1135999999998877654 899999987653
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.11 E-value=5.7e-09 Score=117.05 Aligned_cols=197 Identities=10% Similarity=-0.017 Sum_probs=136.2
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
..+.+++++++|+++++.. ++.|++||..++....+. .....+.+|++ .++|+++++...++.|++|+..+...
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~~~~~--- 141 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAV-DTQGAVYVADRGNNRVVKLAAGSKTQ--- 141 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEE-CTTCCEEEEEGGGTEEEEECTTCCSC---
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEE-CCCCCEEEEECCCCEEEEEECCCcee---
Confidence 4567899999999666655 889999999877554443 23367899999 78899888888889999997654331
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
.............+++++++. ++++.. ++.+.+|+...... ......
T Consensus 142 -----------~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~--------------------~~~~~~ 189 (270)
T 1rwi_B 142 -----------TVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQ--------------------VVLPFT 189 (270)
T ss_dssp -----------EECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCE--------------------EECCCS
T ss_pred -----------EeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCce--------------------Eeeccc
Confidence 011112223567899999886 555554 56777776532110 011112
Q ss_pred cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEEC
Q 039790 375 HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWAS 454 (1395)
Q Consensus 375 h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl 454 (1395)
+...+.+|+++++| +++++...++.|.+||............+.. .+.+++|+ ++|+.+++ ...++.|++|++
T Consensus 190 ~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~-~p~~i~~~----~~g~l~v~-~~~~~~v~~~~~ 262 (270)
T 1rwi_B 190 DITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN-TPLAVAVD----SDRTVYVA-DRGNDRVVKLTS 262 (270)
T ss_dssp SCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCCSCS-CEEEEEEC----TTCCEEEE-EGGGTEEEEECC
T ss_pred CCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccCCCC-CceeEEEC----CCCCEEEE-ECCCCEEEEEcC
Confidence 33678999999998 7888887889999999866544332222323 68999998 89986666 448999999998
Q ss_pred CCC
Q 039790 455 AEE 457 (1395)
Q Consensus 455 ~tg 457 (1395)
...
T Consensus 263 ~~~ 265 (270)
T 1rwi_B 263 LEH 265 (270)
T ss_dssp CGG
T ss_pred CCc
Confidence 754
No 200
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.11 E-value=3e-09 Score=137.45 Aligned_cols=246 Identities=10% Similarity=0.055 Sum_probs=157.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEEc-----CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCc-------
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLK-----LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGR------- 281 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~-----DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dgt------- 281 (1395)
+|...+.++.|||||++||++.. +..|+|||+.++.......+......++| + |++.|+.++.|..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~W-s-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISW-L-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEE-E-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEE-e-CCCEEEEEEecCcccccccc
Confidence 35567889999999999997643 25799999999864433222112357899 7 9999999988854
Q ss_pred ------EEEEECCCCCCCCCCcccccceEEEEEEecC---CCCCccEEEEeCCCCeEEEEEeC----CeEEEEEcCCCCc
Q 039790 282 ------FFIWNITEGPDEEDKPQILGKIVVAIQILAD---GDSVHPRVCWHPHKQEILMLAIG----NRILKIDSNRVGK 348 (1395)
Q Consensus 282 ------V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~---~~~~v~~v~~sp~~~~lla~g~~----~~ii~~d~~~~~~ 348 (1395)
|++|++.++.... ..++.. +......+.|++++..+++.... ..+.+++......
T Consensus 204 ~~~~~~v~~~~lgt~~~~~------------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDD------------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp -CCCCEEEEEETTSCGGGC------------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred cCCCcEEEEEECCCCcccc------------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 9999998764110 112222 23345678999999988776653 2455555422110
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCce--eEEecCCCCCCe
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD---GTVKIWDDRKSTP--LAVLRPYDGHPV 423 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D---g~IrIWDl~sg~~--l~tl~~h~~~~V 423 (1395)
....+..+.+..... |+++|+.+++....| +.|.+||+.++.+ ...+..|.. .+
T Consensus 272 -------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~ 330 (693)
T 3iuj_A 272 -------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QV 330 (693)
T ss_dssp -------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SC
T ss_pred -------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CE
Confidence 133444566666555 667775666666554 6799999988765 456777765 44
Q ss_pred eEEEEeecCCCCCcEEEEEecCCC--eEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCC
Q 039790 424 NCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGL 501 (1395)
Q Consensus 424 ~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~ 501 (1395)
. .|+ +++++|+.+...|+ .|++||+..+ ....+...... ....+.+++++.
T Consensus 331 ~--~~s----~~g~~lv~~~~~~g~~~l~~~d~~g~-------------~~~~l~~p~~~--------~~~~~~~~~d~~ 383 (693)
T 3iuj_A 331 L--TVH----SGSGYLFAEYMVDATARVEQFDYEGK-------------RVREVALPGLG--------SVSGFNGKHDDP 383 (693)
T ss_dssp E--EEE----EETTEEEEEEEETTEEEEEEECTTSC-------------EEEEECCSSSS--------EEEECCCCTTCS
T ss_pred E--EEE----EECCEEEEEEEECCeeEEEEEECCCC-------------eeEEeecCCCc--------eEEeeecCCCCC
Confidence 4 888 88888887764555 6888988743 33444432211 111344567777
Q ss_pred EEEEEeCC----CeEEEEEcCCCC
Q 039790 502 FLLANAKK----NAIYAIHMDYGP 521 (1395)
Q Consensus 502 ~LaSgs~D----g~I~iWdl~~g~ 521 (1395)
.|+....+ +.|+.||+.+++
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEecCCCCCCEEEEEECCCCe
Confidence 66555444 789999987653
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.10 E-value=4.2e-08 Score=112.65 Aligned_cols=229 Identities=9% Similarity=-0.017 Sum_probs=149.4
Q ss_pred CCCCCEEEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 214 SDPGLVLGRQIAVNR-NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg-~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
.+...-.+..|++++ .++++...++.|+.||..++....+. +...+.+++| .++|+++++ . ++.|++||..+++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~-~~dG~l~v~-~-~~~l~~~d~~~g~- 84 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVSSVAL-RQSGGYVAT-I-GTKFCALNWKEQS- 84 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEEEEEE-BTTSSEEEE-E-TTEEEEEETTTTE-
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceEEEEE-CCCCCEEEE-E-CCeEEEEECCCCc-
Confidence 344566788999954 55666667899999999988655443 4578999999 889996555 3 5689999998765
Q ss_pred CCCCcccccceEEEEEEecC--CCCCccEEEEeCCCCeEEEEEeC-----------CeEEEEEcCCCCccccccCCCCCc
Q 039790 293 EEDKPQILGKIVVAIQILAD--GDSVHPRVCWHPHKQEILMLAIG-----------NRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~--~~~~v~~v~~sp~~~~lla~g~~-----------~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+..+..... ....+..+++++++..++..... +.+++++.. +.
T Consensus 85 -----------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~----------- 140 (297)
T 3g4e_A 85 -----------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--HH----------- 140 (297)
T ss_dssp -----------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--SC-----------
T ss_pred -----------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--CC-----------
Confidence 111111111 12335678999998744433221 234444321 11
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCce-----eEEecCCCCCCeeEEEEeecC
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD--RKSTP-----LAVLRPYDGHPVNCVTFLIGP 432 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl--~sg~~-----l~tl~~h~~~~V~sV~fs~~~ 432 (1395)
...+..+....+.++|+|++..++++.+.++.|.+||+ .+|.. +..+..+.+ .+..+++.
T Consensus 141 ---------~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d--- 207 (297)
T 3g4e_A 141 ---------VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCID--- 207 (297)
T ss_dssp ---------EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEB---
T ss_pred ---------EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEEC---
Confidence 12222334457899999998445567777899999987 45543 223333334 68899998
Q ss_pred CCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe-CCCCEEEEEe
Q 039790 433 HPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN-RAGLFLLANA 507 (1395)
Q Consensus 433 ~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S-~dg~~LaSgs 507 (1395)
++|.+.++.. .++.|.+||..++ +++..+..+...+ .+++|. +++..|...+
T Consensus 208 -~~G~lwva~~-~~~~v~~~d~~tG------------~~~~~i~~p~~~~---------t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 208 -AEGKLWVACY-NGGRVIRLDPVTG------------KRLQTVKLPVDKT---------TSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp -TTSCEEEEEE-TTTEEEEECTTTC------------CEEEEEECSSSBE---------EEEEEESGGGCEEEEEE
T ss_pred -CCCCEEEEEc-CCCEEEEEcCCCc------------eEEEEEECCCCCc---------eEEEEeCCCCCEEEEEc
Confidence 8997776654 6788999999888 8888887664333 247887 7766554443
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.10 E-value=7.9e-09 Score=134.51 Aligned_cols=279 Identities=10% Similarity=0.024 Sum_probs=160.9
Q ss_pred EecCCCEEEEEEcCCe---EEEEEC--C---CCceEEe-------ccCCCCeEEEEEeeCCCCEEEEEECC-----CcEE
Q 039790 224 IAVNRNYICYGLKLGN---IRILNI--I---TALRSLL-------RGHTQRVTDMAFFAEDVHLLASASVD-----GRFF 283 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~---IrIWd~--~---~~~~~~l-------~~H~~~V~slaf~s~dg~~LaSgs~D-----gtV~ 283 (1395)
.+++|+++++...++. -.||.. . ++....+ .+|...+..++| ++||++|+.++.+ .+|+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~-SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAA-SDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEE-CTTSSEEEEEEEETTCSEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEE-CCCCCEEEEEEcCCCCceEEEE
Confidence 3489999998876543 455544 3 4433332 234447889999 8999999887654 4699
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCe--------------EEEEEcCCCCcc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNR--------------ILKIDSNRVGKG 349 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~--------------ii~~d~~~~~~~ 349 (1395)
+||+.+++. +. ... ....+..++|+|+ +.|+.+..++. +.+|+... +..
T Consensus 193 v~dl~tg~~-----------~~-~~~---~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt-~~~ 255 (741)
T 1yr2_A 193 FVGVADGKP-----------LA-DEL---KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT-PQS 255 (741)
T ss_dssp EEETTTCCE-----------EE-EEE---EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTS-CGG
T ss_pred EEECCCCCC-----------CC-ccC---CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCC-Cch
Confidence 999998871 11 111 0111346899999 88888776543 44444321 110
Q ss_pred ccccCCCCCccCccccccceEEEcc--cCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCC--ceeEEecCCCC
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGK--HDGEITELSMCQWLTTRLASASLDG-----TVKIWDDRKS--TPLAVLRPYDG 420 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~--h~~~V~slafspdg~~~LaSgs~Dg-----~IrIWDl~sg--~~l~tl~~h~~ 420 (1395)
....++.. |...+..+.|+||| ++|+..+.++ .|++||+.++ .+...+..+..
T Consensus 256 -----------------~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 256 -----------------ADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp -----------------GCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred -----------------hCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 01223332 33468999999999 6777766544 7999999887 42556665554
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecC---CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPL---NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN 497 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~---Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S 497 (1395)
.+.... + ++|+.|+..+.. ++.|.+||+.++ . ......+..+... ...+.++
T Consensus 318 -~~~~~~-~----~dg~~l~~~s~~~~~~~~l~~~d~~~~---------~-~~~~~l~~~~~~~---------l~~~~~~ 372 (741)
T 1yr2_A 318 -AQWDFV-D----GVGDQLWFVSGDGAPLKKIVRVDLSGS---------T-PRFDTVVPESKDN---------LESVGIA 372 (741)
T ss_dssp -SCEEEE-E----EETTEEEEEECTTCTTCEEEEEECSSS---------S-CEEEEEECCCSSE---------EEEEEEE
T ss_pred -ceEEEE-e----ccCCEEEEEECCCCCCCEEEEEeCCCC---------c-cccEEEecCCCCe---------EEEEEEE
Confidence 455554 4 688888776522 456999998764 1 1222223222211 1235555
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC-CCCCCCcceeeeeeeeccccEEEEecCCC-CcC------cCCCCeEEEEEcCCCcee
Q 039790 498 RAGLFLLANAKKNAIYAIHMDY-GPNPASTRMDYIAEFTVTMPILSLTGTTT-DAS------PDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 498 ~dg~~LaSgs~Dg~I~iWdl~~-g~~~~~~~~~~i~~f~~~~~ils~~~~~~-d~~------~s~dg~V~lWdv~t~~i~ 569 (1395)
++.++++...|+..+||.+.. |. ....+. +.....+..+.+... +.+ ....+.|++||+.+++..
T Consensus 373 -~~~lv~~~~~dg~~~l~~~~~~g~-----~~~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~ 445 (741)
T 1yr2_A 373 -GNRLFASYIHDAKSQVLAFDLDGK-----PAGAVS-LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT 445 (741)
T ss_dssp -BTEEEEEEEETTEEEEEEEETTSC-----EEEECB-CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCC-----ceeecc-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 677888888899888877653 21 111111 111122223332210 111 123478999999988754
Q ss_pred e
Q 039790 570 Q 570 (1395)
Q Consensus 570 ~ 570 (1395)
.
T Consensus 446 ~ 446 (741)
T 1yr2_A 446 P 446 (741)
T ss_dssp E
T ss_pred E
Confidence 3
No 203
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.09 E-value=6.2e-08 Score=112.96 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=142.9
Q ss_pred CEEEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 218 LVLGRQIAVNR-NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 218 ~V~~va~Spdg-~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
...+..|++++ .+++++..++.|.+||..++....+. +...|.+++| .++|++++++ .+ .|++||..+++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~-~~dg~l~v~~-~~-gl~~~d~~~g~~---- 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAK-ISDSKQLIAS-DD-GLFLRDTATGVL---- 121 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEE-EETTEEEEEE-TT-EEEEEETTTCCE----
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEE-eCCCeEEEEE-CC-CEEEEECCCCcE----
Confidence 34577899975 45566667899999999988655443 3567999999 7888877754 44 499999987761
Q ss_pred cccccceEEEEEEec--CCCCCccEEEEeCCCCeEEEEEe------CCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 297 PQILGKIVVAIQILA--DGDSVHPRVCWHPHKQEILMLAI------GNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~--~~~~~v~~v~~sp~~~~lla~g~------~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
..+.... .....+..+++++++..++.... .+.+++++ . +.
T Consensus 122 --------~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~--g~-------------------- 170 (326)
T 2ghs_A 122 --------TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K--GK-------------------- 170 (326)
T ss_dssp --------EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T--TE--------------------
T ss_pred --------EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C--Cc--------------------
Confidence 1111111 11234668999999874443322 14566665 1 21
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--CC-c-----eeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR--KS-T-----PLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~--sg-~-----~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
...+..+....+.++|++++..++++.+.++.|.+||+. +| . .+..+....+ .+..+++. ++|.+++
T Consensus 171 ~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d----~~G~lwv 245 (326)
T 2ghs_A 171 VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCD----AEGHIWN 245 (326)
T ss_dssp EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEEC----TTSCEEE
T ss_pred EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEEC----CCCCEEE
Confidence 112222334578999999984344555667899999986 56 3 2233333344 67889998 8898777
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe-CCCCEEEEEe
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN-RAGLFLLANA 507 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S-~dg~~LaSgs 507 (1395)
+.. .++.|.+||. ++ +.+..+..+...+ ..++|+ +++..|+.++
T Consensus 246 a~~-~~~~v~~~d~-~g------------~~~~~i~~~~~~~---------~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 246 ARW-GEGAVDRYDT-DG------------NHIARYEVPGKQT---------TCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEE-TTTEEEEECT-TC------------CEEEEEECSCSBE---------EEEEEESTTSCEEEEEE
T ss_pred EEe-CCCEEEEECC-CC------------CEEEEEECCCCCc---------EEEEEecCCCCEEEEEe
Confidence 654 5789999998 45 6666666554322 358887 7876554443
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.09 E-value=2.8e-07 Score=109.69 Aligned_cols=239 Identities=10% Similarity=0.004 Sum_probs=146.5
Q ss_pred EEEEecCCCEEEEEE----------cCCeEEEEECCCCc-eEEeccC-------CCCeEEEEEeeCCCCEEEEEEC--CC
Q 039790 221 GRQIAVNRNYICYGL----------KLGNIRILNIITAL-RSLLRGH-------TQRVTDMAFFAEDVHLLASASV--DG 280 (1395)
Q Consensus 221 ~va~Spdg~~LasGs----------~DG~IrIWd~~~~~-~~~l~~H-------~~~V~slaf~s~dg~~LaSgs~--Dg 280 (1395)
.++|+|||++|+++. .++.|.+||..+.. +..+.-- ...-..++| ++||++|+.+.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~-spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN-TPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE-CCCCCEEEEEecCCCC
Confidence 789999999999885 36789999998763 2222111 123457899 999999998874 47
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEE-ecCCCCCccEEEEeCCCCe-EEEEEeCCeEEEEEcCCCCccccccCCCCC
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQI-LADGDSVHPRVCWHPHKQE-ILMLAIGNRILKIDSNRVGKGERFSAEEPL 358 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~-~~~~~~~v~~v~~sp~~~~-lla~g~~~~ii~~d~~~~~~~~~~s~~~~~ 358 (1395)
.|.++| .+++. +.. +... .++.+.+++.. +++.+.++.++.|+. .++....
T Consensus 149 ~v~viD-~t~~~--------------~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~--~g~~~~~------ 201 (373)
T 2mad_H 149 AVGLVV-QGGSS--------------DDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH--AGGAAGA------ 201 (373)
T ss_pred eEEEEE-CCCCE--------------EeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC--CCcEEEE------
Confidence 899999 88761 111 1111 12445555543 344445666666665 2221100
Q ss_pred ccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCCC---------CCCeeEEE
Q 039790 359 KCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPYD---------GHPVNCVT 427 (1395)
Q Consensus 359 ~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~---------~~~V~sV~ 427 (1395)
......+.+.........|.++++.+++. +.++.|.++|+..+. .+..+.... ......+.
T Consensus 202 -------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~ 273 (373)
T 2mad_H 202 -------GLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred -------EeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence 00000011111112335667776444444 367899999987652 233332111 01234477
Q ss_pred EeecCCCCCcEEEEEec---------CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 428 FLIGPHPQHIVLITGGP---------LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs---------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
|+ +|+..|+++.. .++.|.++|+.++ +.+.++...... ..+.|++
T Consensus 274 ~s----~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~------------~vv~~i~~g~~p----------~~i~~s~ 327 (373)
T 2mad_H 274 YL----KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG------------QTSSQISLGHDV----------DAISVAQ 327 (373)
T ss_pred EC----CCCCEEEEEeccCCcccccCCCCeEEEEECCCC------------EEEEEEECCCCc----------CeEEECC
Confidence 87 88888777542 1357999999888 888888654321 2599999
Q ss_pred CCC-EEEEEe-CCCeEEEEEcCCCC
Q 039790 499 AGL-FLLANA-KKNAIYAIHMDYGP 521 (1395)
Q Consensus 499 dg~-~LaSgs-~Dg~I~iWdl~~g~ 521 (1395)
||+ +++++. .++.|.+||+.+++
T Consensus 328 Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 328 DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCeEEEEEcCCCCeEEEEECCCCC
Confidence 999 677766 58999999998865
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.08 E-value=2.1e-08 Score=114.99 Aligned_cols=204 Identities=11% Similarity=0.095 Sum_probs=138.6
Q ss_pred CCCCEEEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEe-cc-----CCCCeEEEEEeeCCCCEEEEEECC--------
Q 039790 215 DPGLVLGRQIAVN-RNYICYGLKLGNIRILNIITALRSLL-RG-----HTQRVTDMAFFAEDVHLLASASVD-------- 279 (1395)
Q Consensus 215 h~~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~~~~~l-~~-----H~~~V~slaf~s~dg~~LaSgs~D-------- 279 (1395)
+...+.+++++++ |+++++. ..+.|.+||.. +....+ .. +...+.++++ .++|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAF-DYEGNLWITAPAGEVAPADYT 145 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEE-CTTSCEEEEECBCBCTTSCCC
T ss_pred CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEE-CCCCCEEEEecCccccccccc
Confidence 3467889999999 6655544 44579999998 755444 22 1245889999 8889888877665
Q ss_pred -------CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEe----CCCCeEEEEEe-CCeEEEEEcCCCC
Q 039790 280 -------GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWH----PHKQEILMLAI-GNRILKIDSNRVG 347 (1395)
Q Consensus 280 -------gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~s----p~~~~lla~g~-~~~ii~~d~~~~~ 347 (1395)
+.|+.||.. ++ .. .+. .+......++|+ +++..++++.. ++.+.+|+....+
T Consensus 146 ~~~~~~~~~l~~~~~~-g~-----------~~---~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g 209 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTD-GQ-----------MI---QVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA 209 (314)
T ss_dssp BTTSSSCEEEEEECTT-SC-----------EE---EEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT
T ss_pred ccccCCCCeEEEECCC-CC-----------EE---Eec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC
Confidence 567777755 43 11 111 112234678999 98877777664 5778888753111
Q ss_pred ccccccCCCCCccCccccccceEEEcccC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEE
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHD-GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~-~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV 426 (1395)
... .......+.++. ..+..++++++| +++++...++.|.+||..+++.+..+..+.. .+.++
T Consensus 210 ~~~--------------~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i 273 (314)
T 1pjx_A 210 KIE--------------NKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNL 273 (314)
T ss_dssp EEE--------------EEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEE
T ss_pred ccc--------------cceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-CceeE
Confidence 100 000012233343 568889999998 7888877889999999988888888877755 89999
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+|+ ++|++|++++..++.|..|++...
T Consensus 274 ~~~----~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 274 HFK----PQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEC----TTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEC----CCCCEEEEEeCCCCeEEEEeCCCC
Confidence 998 999967666656789999998653
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.03 E-value=1.5e-07 Score=106.75 Aligned_cols=237 Identities=8% Similarity=-0.020 Sum_probs=160.1
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEE--eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSL--LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~--l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
....+.++.+.++|++.++...++.|.+||.. +.... +..+...+.+|++ .+++.++++...++.|.+||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIV-SSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEE-CCCCCEEEEecCCCeEEEECCC-CCe
Confidence 44678899999999988877778999999988 64433 3334467999999 7888888877778899999987 551
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..+ ........+..+++.+++. ++++.. ++.+.+++.. +... ...
T Consensus 95 ------------~~~-~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~------------------~~~ 140 (300)
T 2qc5_A 95 ------------TEY-PLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD--GTIY------------------EYD 140 (300)
T ss_dssp ------------EEE-ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT--SCEE------------------EEE
T ss_pred ------------EEe-cCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC--CCEE------------------Ecc
Confidence 111 1122335567888988775 444444 6677777653 2210 011
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
+......+.++++.++| +++++...++.|..||. +++.... +..+.. .+.++++. ++|..+++.. .++.|.
T Consensus 141 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~d----~~g~l~v~~~-~~~~i~ 212 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLEEYPLPTNAA-APVGITSG----NDGALWFVEI-MGNKIG 212 (300)
T ss_dssp CSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEEC----TTSSEEEEET-TTTEEE
T ss_pred CCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEEEeeCCCCCC-CcceEEEC----CCCCEEEEcc-CCCEEE
Confidence 22244578999999998 67777666889999998 6654432 223333 78999998 8887666543 677899
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
+||. ++ .... +...... .....++++++|.++++...++.|+.|+.
T Consensus 213 ~~~~-~g------------~~~~-~~~~~~~-------~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 213 RITT-TG------------EISE-YDIPTPN-------ARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EECT-TC------------CEEE-EECSSTT-------CCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EEcC-CC------------cEEE-EECCCCC-------CCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 9998 43 2222 2211110 11235888999998888877889999986
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.03 E-value=4.5e-07 Score=102.66 Aligned_cols=235 Identities=9% Similarity=-0.035 Sum_probs=155.7
Q ss_pred CCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe--ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL--RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l--~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
+...+.++++.++|+++++...++.|.+||.. +....+ ......+.++++ .+++.++++...++.|..||.. ++.
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITE-GLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE-CSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceE-CCCCCEEEEccCCCeEEEECCC-CCE
Confidence 34678899999999987777668899999988 543333 234467999999 7888888887778899999987 541
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
..+ ...........+++.+++. ++++.. ++.+.+++. . +... ...
T Consensus 137 ------------~~~-~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~-g~~~------------------~~~ 182 (300)
T 2qc5_A 137 ------------YEY-DLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-T-GKLE------------------EYP 182 (300)
T ss_dssp ------------EEE-ECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-T-CCEE------------------EEE
T ss_pred ------------EEc-cCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-C-CcEE------------------Eee
Confidence 111 1222345567889999887 555554 567777765 1 1110 011
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
...+...+.++++.++| +++++...++.|.+||. ++..... +..+.. .+.++++. ++|..+++. ..++.|.
T Consensus 183 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~d----~~g~l~v~~-~~~~~i~ 254 (300)
T 2qc5_A 183 LPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEISEYDIPTPNA-RPHAITAG----KNSEIWFTE-WGANQIG 254 (300)
T ss_dssp CSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTC-CEEEEEEC----STTCEEEEE-TTTTEEE
T ss_pred CCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEEEEECCCCCC-CceEEEEC----CCCCEEEec-cCCCeEE
Confidence 12344578999999988 77777667788999998 5554433 333333 78999998 888866654 3678999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
.||. ++ .. ..+...... .....++++++|.++++.. + .|..++.
T Consensus 255 ~~~~-~g------------~~-~~~~~~~~~-------~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 255 RITN-DN------------TI-QEYQLQTEN-------AEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EECT-TS------------CE-EEEECCSTT-------CCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EECC-CC------------cE-EEEECCccC-------CccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9998 33 22 233222110 1123488889999777665 4 6776664
No 208
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.03 E-value=4e-08 Score=111.96 Aligned_cols=216 Identities=8% Similarity=-0.025 Sum_probs=148.8
Q ss_pred CCCeEEeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCC-CCEEEEEEecCCCEEEEEE
Q 039790 157 PSDSTVVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDP-GLVLGRQIAVNRNYICYGL 235 (1395)
Q Consensus 157 p~~~Las~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~-~~V~~va~Spdg~~LasGs 235 (1395)
|...|++++.++.|.+||.. +|+. +|.+. .+. ..+.++.++++|++|+ +
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~--tG~~------~w~~~--------------------~~~~~~~~~~~~~pdG~ilv--s 53 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD--TKEI------VWEYP--------------------LEKGWECNSVAATKAGEILF--S 53 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT--TTEE------EEEEE--------------------CCTTCCCCEEEECTTSCEEE--E
T ss_pred CCcEEEeeCCCCEEEEEECC--CCeE------EEEeC--------------------CCccCCCcCeEECCCCCEEE--e
Confidence 45788999999999999942 2322 23332 222 3567888999999888 4
Q ss_pred cCCeEEEEECCCCceEEeccC-CCCeEEEEEeeCCCCEEEEEEC-CCcEEEEECCCCCCCCCCcccccceEEEEEEecC-
Q 039790 236 KLGNIRILNIITALRSLLRGH-TQRVTDMAFFAEDVHLLASASV-DGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD- 312 (1395)
Q Consensus 236 ~DG~IrIWd~~~~~~~~l~~H-~~~V~slaf~s~dg~~LaSgs~-DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~- 312 (1395)
.++.|+.||.....+..+..+ ...+.++.+ .++|++|++.+. ++.|..+|. +|+ .+..+.+...
T Consensus 54 ~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~-~~dG~~lv~~~~~~~~v~~vd~-~Gk-----------~l~~~~~~~~~ 120 (276)
T 3no2_A 54 YSKGAKMITRDGRELWNIAAPAGCEMQTARI-LPDGNALVAWCGHPSTILEVNM-KGE-----------VLSKTEFETGI 120 (276)
T ss_dssp CBSEEEEECTTSCEEEEEECCTTCEEEEEEE-CTTSCEEEEEESTTEEEEEECT-TSC-----------EEEEEEECCSC
T ss_pred CCCCEEEECCCCCEEEEEcCCCCccccccEE-CCCCCEEEEecCCCCEEEEEeC-CCC-----------EEEEEeccCCC
Confidence 578899999944456666654 347889999 899999999887 777877775 455 3333333221
Q ss_pred --CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCc
Q 039790 313 --GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTT 390 (1395)
Q Consensus 313 --~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~ 390 (1395)
+......+.+.+++..+++...++.++.|+.. ++. +..+.. ...+.++.+.++| +
T Consensus 121 ~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~-------------------~w~~~~-~~~~~~~~~~~~g-~ 177 (276)
T 3no2_A 121 ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQL-------------------LNSVKL-SGTPFSSAFLDNG-D 177 (276)
T ss_dssp SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCE-------------------EEEEEC-SSCCCEEEECTTS-C
T ss_pred CcccccccCceECCCCCEEEEecCCCEEEEECCC--CCE-------------------EEEEEC-CCCccceeEcCCC-C
Confidence 11234456788888866665556777777653 331 233332 2456677888888 7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCCC-----CCeeEEEEeecCCCCCcEEEEE
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYDG-----HPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-----~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
++++++.+++|..||..+|+.+.++..+.. ..+..+... ++|..+++.
T Consensus 178 ~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~----~~G~i~v~~ 230 (276)
T 3no2_A 178 CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL----QNGGLYICN 230 (276)
T ss_dssp EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC----TTSCEEEEE
T ss_pred EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc----CCCCEEEEe
Confidence 888888888999999999999999864321 137788887 899888875
No 209
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.96 E-value=1.1e-07 Score=109.41 Aligned_cols=239 Identities=8% Similarity=-0.000 Sum_probs=152.5
Q ss_pred eeeeeCCCCCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 209 ITKYISDPGLVLGRQIAVNRN-YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 209 i~~l~~h~~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
+..+..+.....+..|+++|+ +++++..++.|..|+. ++....+..+...+..++| .++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~-d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAV-DAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEE-CTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeE-CCCCCEEEEECCCCEEEEECC
Confidence 444555667788999999998 5666777899999998 4556666667788999999 889987776666688999997
Q ss_pred CCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEE---Ee--------------CCeEEEEEcCCCCcc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILML---AI--------------GNRILKIDSNRVGKG 349 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~---g~--------------~~~ii~~d~~~~~~~ 349 (1395)
. +.. ........ .....+..+++++++..+++- |. .+.+++++... +.
T Consensus 115 ~-g~~-----------~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~- 180 (305)
T 3dr2_A 115 D-GQA-----------HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SP- 180 (305)
T ss_dssp T-SCE-----------EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CC-
T ss_pred C-CCE-----------EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-Cc-
Confidence 6 541 00001111 112345678999988644421 11 13455554321 11
Q ss_pred ccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC------CcEEEEeCCCCceeE---Ee-cCCC
Q 039790 350 ERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLD------GTVKIWDDRKSTPLA---VL-RPYD 419 (1395)
Q Consensus 350 ~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D------g~IrIWDl~sg~~l~---tl-~~h~ 419 (1395)
+..+. .....+.++|+||+ ++|+.+..+ +.|++||+..+. +. .+ ....
T Consensus 181 -------------------~~~~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~ 238 (305)
T 3dr2_A 181 -------------------LQRMA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPD 238 (305)
T ss_dssp -------------------CEEEE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSS
T ss_pred -------------------EEEEe-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCC
Confidence 11112 33457889999998 666666554 789999987654 21 12 1223
Q ss_pred CCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC
Q 039790 420 GHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA 499 (1395)
Q Consensus 420 ~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d 499 (1395)
+ .+..+++. ++|++.++ . .+ .|.+||.. + +.+..+..+.. . ..++|+++
T Consensus 239 ~-~pdgi~~d----~~G~lwv~-~-~~-gv~~~~~~-g------------~~~~~~~~~~~-~---------~~~~f~~d 287 (305)
T 3dr2_A 239 G-LPDGFCVD----RGGWLWSS-S-GT-GVCVFDSD-G------------QLLGHIPTPGT-A---------SNCTFDQA 287 (305)
T ss_dssp S-CCCSEEEC----TTSCEEEC-C-SS-EEEEECTT-S------------CEEEEEECSSC-C---------CEEEECTT
T ss_pred C-CCCeEEEC----CCCCEEEe-c-CC-cEEEECCC-C------------CEEEEEECCCc-e---------eEEEEeCC
Confidence 3 56788998 89985554 3 34 59999973 4 66677765442 1 24888899
Q ss_pred CCEEEEEeCCCeEEEEEc
Q 039790 500 GLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 500 g~~LaSgs~Dg~I~iWdl 517 (1395)
+..|..++.+ .++.+++
T Consensus 288 ~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 288 QQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp SCEEEEEETT-EEEEEEC
T ss_pred CCEEEEEcCC-eEEEEEC
Confidence 8888777765 4554443
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.93 E-value=2e-08 Score=119.34 Aligned_cols=172 Identities=10% Similarity=0.033 Sum_probs=125.4
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-----------eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITAL-----------RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN 286 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-----------~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd 286 (1395)
.+..+++++...++++|+.++ ++||++.... ......+.. |+.|+| ++.+|+++ .+|.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 688899999999999999985 5569865421 112334667 999999 88999998 889999999
Q ss_pred CCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 287 ITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 287 l~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
+.+... ......+...+..+.+.+. .++++..++.+.+|+.....
T Consensus 113 v~sl~~--------------~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~------------------- 157 (388)
T 1xip_A 113 LEELSE--------------FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS------------------- 157 (388)
T ss_dssp SSSTTC--------------EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-------------------
T ss_pred chhhhc--------------cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc-------------------
Confidence 987541 1111222334555555543 47777778888888764321
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce--eEEe------c---CCCCCCeeEEEEeecCCCC
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP--LAVL------R---PYDGHPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~--l~tl------~---~h~~~~V~sV~fs~~~~pd 435 (1395)
.. .+...|+|++|||+| ++.|..||+|++|+...+.+ ..++ . +|.. .|.+|.|. ++
T Consensus 158 --~~---~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~-~V~sI~wl----~~ 224 (388)
T 1xip_A 158 --TK---QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY-SPLSVTIL----SP 224 (388)
T ss_dssp --EE---EEEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS-EEEEEEES----SS
T ss_pred --cc---cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCe-eEEEEEEe----cC
Confidence 11 145689999999987 67899999999999887775 6677 2 3654 89999999 89
Q ss_pred CcEEEEEe
Q 039790 436 HIVLITGG 443 (1395)
Q Consensus 436 g~~L~s~G 443 (1395)
+.++++-+
T Consensus 225 ~~flv~y~ 232 (388)
T 1xip_A 225 QDFLAVFG 232 (388)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEc
Confidence 99988755
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.92 E-value=1.9e-07 Score=110.59 Aligned_cols=239 Identities=10% Similarity=0.076 Sum_probs=148.1
Q ss_pred EEEEecCCCEEEEEE----------cCCeEEEEECCCCc-eEEeccC-------CCCeEEEEEeeCCCCEEEEEEC--CC
Q 039790 221 GRQIAVNRNYICYGL----------KLGNIRILNIITAL-RSLLRGH-------TQRVTDMAFFAEDVHLLASASV--DG 280 (1395)
Q Consensus 221 ~va~Spdg~~LasGs----------~DG~IrIWd~~~~~-~~~l~~H-------~~~V~slaf~s~dg~~LaSgs~--Dg 280 (1395)
.++++|||++|+++. .++.|.+||..+.. +..+.-. ...-..++| ++||++|+.+.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~-spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL-TPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE-CTTSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE-cCCCCEEEEEEcCCCC
Confidence 389999999887775 36789999999975 3333211 124567899 999999888864 68
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.|.++|+.+++ .+..+.+- . +...+......+++.+.++.+..++....++... ...
T Consensus 161 ~VsVID~~t~~-----------vv~tI~v~---g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~----- 217 (386)
T 3sjl_D 161 AVGVVDLEGKA-----------FKRMLDVP---D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THT----- 217 (386)
T ss_dssp EEEEEETTTTE-----------EEEEEECC---S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EEC-----
T ss_pred eEEEEECCCCc-----------EEEEEECC---C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEE-eec-----
Confidence 99999999887 22222211 1 0122222334556667777777776644332100 000
Q ss_pred CccccccceEEEcccCCCeE-EEEEe-cCCCcEEEEEeCCCcEEEEeCCCCc--eeEEec---------CC-CCCCeeEE
Q 039790 361 PVDELINGVQLVGKHDGEIT-ELSMC-QWLTTRLASASLDGTVKIWDDRKST--PLAVLR---------PY-DGHPVNCV 426 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~-slafs-pdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~---------~h-~~~~V~sV 426 (1395)
..+..-...+. ...|. ++| ++++ .+.+|+|.+.|+.++. .+..+. +. -+ ....+
T Consensus 218 ---------~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~-g~q~~ 285 (386)
T 3sjl_D 218 ---------EVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG-GWQQV 285 (386)
T ss_dssp ---------CCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC-SSSCE
T ss_pred ---------ceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCC-Cccee
Confidence 00000111111 23564 555 4444 5668999999997664 333332 10 11 34567
Q ss_pred EEeecCCCCCcEEEEEecC---------CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEe
Q 039790 427 TFLIGPHPQHIVLITGGPL---------NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALN 497 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~---------Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S 497 (1395)
+++ +++..|+.+... .++|.+.|+.++ +.+.++...... ..+.++
T Consensus 286 a~~----~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~------------kv~~~i~vg~~~----------~~lavs 339 (386)
T 3sjl_D 286 AYH----RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG------------ERLAKFEMGHEI----------DSINVS 339 (386)
T ss_dssp EEE----TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC------------CEEEEEEEEEEE----------CEEEEC
T ss_pred eEC----CCCCeEEEEeccccccccCCCCCEEEEEECCCC------------eEEEEEECCCCc----------ceEEEC
Confidence 888 888887775411 257999999888 888888754321 259999
Q ss_pred CCCC-EEEE-EeCCCeEEEEEcCCCC
Q 039790 498 RAGL-FLLA-NAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 498 ~dg~-~LaS-gs~Dg~I~iWdl~~g~ 521 (1395)
+||+ +|++ ...++.|.++|..+++
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 9996 5554 5669999999998865
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.91 E-value=1.7e-06 Score=102.85 Aligned_cols=282 Identities=9% Similarity=-0.019 Sum_probs=160.2
Q ss_pred EecCCCEEEEEEc--CC---eEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEE----------CCCcEEEEEC
Q 039790 224 IAVNRNYICYGLK--LG---NIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASAS----------VDGRFFIWNI 287 (1395)
Q Consensus 224 ~Spdg~~LasGs~--DG---~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs----------~DgtV~IWdl 287 (1395)
..++++++++... .+ .|.+||..++. +..+...... .++| ++||++|+.+. .++.|.+||.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~-spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVA-AHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEE-CCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 3467776666542 22 88999999875 3344433333 8999 99999988886 3678999999
Q ss_pred CCCCCCCCCcccccceEEEEEEecC----CCCCccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCCCccC
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILAD----GDSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~----~~~~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
.+.+ .+..+.+-.. .......+.|+|++++++++.. .+.+.++| .. ++.
T Consensus 105 ~t~~-----------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~~------------ 159 (373)
T 2mad_H 105 VTFL-----------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GSS------------ 159 (373)
T ss_pred CCCc-----------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CCE------------
Confidence 8766 1222221100 0123347899999999998875 46688877 33 221
Q ss_pred ccccccceEE-EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-----CCCCCC-eeEEEEeecCCC
Q 039790 362 VDELINGVQL-VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-----PYDGHP-VNCVTFLIGPHP 434 (1395)
Q Consensus 362 ~~~~~~~~~~-l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-----~h~~~~-V~sV~fs~~~~p 434 (1395)
+.. +. .. .|+.+.+++.+.+++.+.||.+.+||. +++.+.... .... + .....|. +
T Consensus 160 -------~~~~i~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~-p~~~~~~~~----~ 222 (373)
T 2mad_H 160 -------DDQLLS-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ-NLLTQPAQA----N 222 (373)
T ss_pred -------EeEEcC-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc-ceeecceeE----e
Confidence 122 21 11 135666777678888889999999999 887764332 1111 2 2234566 5
Q ss_pred CCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccccc-ccccceEEEEeCCCCEEEEEeC-----
Q 039790 435 QHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLE-DAFFNQVVALNRAGLFLLANAK----- 508 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~-~~~~~~~l~~S~dg~~LaSgs~----- 508 (1395)
++..++... .++.|.+.|+.... ...+..+........... .......+.+++||..|.....
T Consensus 223 ~~~~~~~~~-~~~~v~vid~~~~~----------~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 223 KSGRIVWPV-YSGKILQADISAAG----------ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cCCEEEEEc-CCceEEEEeccCCc----------ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 555444434 67899999987541 122333332211100000 0001123778899887766543
Q ss_pred -----CCeEEEEEcCCCCCCCCcceeeeeeeeccc--cEEEEecCCC-CcC-cC-CCCeEEEEEcCCCcee
Q 039790 509 -----KNAIYAIHMDYGPNPASTRMDYIAEFTVTM--PILSLTGTTT-DAS-PD-GEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 509 -----Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~--~ils~~~~~~-d~~-~s-~dg~V~lWdv~t~~i~ 569 (1395)
.+.|.++|+.+++ . +..+.... ..+.|+.... ..+ .. +++.|.+||+.++++.
T Consensus 292 ~~~~~~~~V~VID~~t~~-----v---v~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVGQ-----T---SSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred cccCCCCeEEEEECCCCE-----E---EEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 3579999987643 2 22222221 1222222220 111 22 4677778887777654
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.86 E-value=9.1e-07 Score=106.62 Aligned_cols=209 Identities=8% Similarity=0.019 Sum_probs=134.1
Q ss_pred CCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-
Q 039790 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN- 336 (1395)
Q Consensus 258 ~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~- 336 (1395)
...+.|+| .++++++++...++.|++||+.++. ...+..... ... ++|+++++.++++..++
T Consensus 131 ~~P~~la~-d~~g~lyv~d~~~~~I~~id~~~g~--------------~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 131 KYMWGIAA-VGNNTVLAYQRDDPRVRLISVDDNK--------------VTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGT 193 (409)
T ss_dssp CCEEEEEE-CSTTEEEEEETTTTEEEEEETTTTE--------------EEEEEETCC-BCB-CEECTTSSEEEEEBSSTT
T ss_pred CCceEEEE-eCCCCEEEEecCCCcEEEEECCCCE--------------EEEeeccCC-CCc-eeEecCCCcEEEEecCCC
Confidence 46889999 7889888888888999999998765 112222222 233 99999999888887755
Q ss_pred -eEEEEEcCCCCccccccCCCCCccCccccccceEEEcc-cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE
Q 039790 337 -RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGK-HDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV 414 (1395)
Q Consensus 337 -~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~-h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t 414 (1395)
.+++++........ .+..+.. +...+.+++|+|+++.++ .+..++.|+.||..++.....
T Consensus 194 ~~I~~~d~~~~~~~~-----------------~~g~~~~~~~~~p~~iav~p~~g~ly-v~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 194 HTVYVYMKASGWAPT-----------------RIGQLGSTFSGKIGAVALDETEEWLY-FVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEEEEEEGGGTTCEE-----------------EEEECCTTSCSCCCBCEECTTSSEEE-EECTTCEEEEEETTTCCEEEE
T ss_pred ceEEEEEcCCCceeE-----------------EeeeccchhcCCcEEEEEeCCCCeEE-EEECCCcEEEEECCCCCEEEE
Confidence 67777653211100 0111112 456678999999553444 477789999999987764332
Q ss_pred ----ecCCCCCCe-e-EEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc-ccc---
Q 039790 415 ----LRPYDGHPV-N-CVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA-ELR--- 484 (1395)
Q Consensus 415 ----l~~h~~~~V-~-sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~-i~~--- 484 (1395)
..++.+ .- . .++|+ |++..|+.+...++.|+.||.... +.++.++... ...
T Consensus 256 ~~~~~~g~~~-~~P~~~ia~~----p~~g~lyv~d~~~~~I~~~~~~g~--------------~~~~~g~~~~~g~~dg~ 316 (409)
T 3hrp_A 256 KQLELSGSLG-TNPGPYLIYY----FVDSNFYMSDQNLSSVYKITPDGE--------------CEWFCGSATQKTVQDGL 316 (409)
T ss_dssp EECCCCSCCC-CSSCCEEEEE----TTTTEEEEEETTTTEEEEECTTCC--------------EEEEEECTTCCSCBCEE
T ss_pred ecccccCCCC-CCccccEEEe----CCCCEEEEEeCCCCEEEEEecCCC--------------EEEEEeCCCCCCcCCCc
Confidence 233333 22 3 99999 865555555668899999987532 2333332200 000
Q ss_pred --ccccccceEEEEeCCCCEEEEEe-CCCeEEEEEcCCC
Q 039790 485 --LEDAFFNQVVALNRAGLFLLANA-KKNAIYAIHMDYG 520 (1395)
Q Consensus 485 --~~~~~~~~~l~~S~dg~~LaSgs-~Dg~I~iWdl~~g 520 (1395)
...-.....++++++|.++++.. .++.|+.|++..|
T Consensus 317 ~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 317 REEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp GGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred ccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 00001234689999999999988 8999999997654
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.83 E-value=7.1e-07 Score=102.31 Aligned_cols=192 Identities=10% Similarity=0.034 Sum_probs=127.2
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC-----CCCeEEEEEeeCCCCEEEEEECC---------Cc
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH-----TQRVTDMAFFAEDVHLLASASVD---------GR 281 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H-----~~~V~slaf~s~dg~~LaSgs~D---------gt 281 (1395)
...+.+++|+++|+++++ . ++.|.+||..++....+..+ ...++++++ .++|+++++...+ ..
T Consensus 53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~-d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKV-DPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEE-CTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEE-CCCCCEEEecCCcccccccccCCC
Confidence 467899999999995554 4 56899999998865544322 245889999 8899977765332 23
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcC-CCCccccccCCCCCc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSN-RVGKGERFSAEEPLK 359 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~-~~~~~~~~s~~~~~~ 359 (1395)
..||.+.... .... + .........++|++++..++++.. .+.|.+|+.. ..+...
T Consensus 130 ~~l~~~d~~g----------~~~~---~-~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~--------- 186 (297)
T 3g4e_A 130 GALYSLFPDH----------HVKK---Y-FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS--------- 186 (297)
T ss_dssp EEEEEECTTS----------CEEE---E-EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE---------
T ss_pred cEEEEEECCC----------CEEE---E-eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc---------
Confidence 4566554322 0111 1 111223457999999988877765 5677777653 222100
Q ss_pred cCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 360 CPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.......+..+.+....+++.++| ++.++...++.|.+||..+|+.+..+..+.. .+++++|. .|+++.|
T Consensus 187 -----~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~---g~d~~~L 256 (297)
T 3g4e_A 187 -----NRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFG---GKNYSEM 256 (297)
T ss_dssp -----EEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEE---SGGGCEE
T ss_pred -----CcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEe---CCCCCEE
Confidence 000012233345678899999998 7888877888999999999999999987765 89999997 2566666
Q ss_pred EEEe
Q 039790 440 ITGG 443 (1395)
Q Consensus 440 ~s~G 443 (1395)
+++.
T Consensus 257 ~vt~ 260 (297)
T 3g4e_A 257 YVTC 260 (297)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5544
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.80 E-value=3.5e-07 Score=107.27 Aligned_cols=261 Identities=5% Similarity=-0.015 Sum_probs=149.4
Q ss_pred CCEEEEEEecCCCEEEEEE--cCCeEEEEECCCCceEEe-------ccCCCCeEEEEEeeCCCCEEEEEEC-----CCcE
Q 039790 217 GLVLGRQIAVNRNYICYGL--KLGNIRILNIITALRSLL-------RGHTQRVTDMAFFAEDVHLLASASV-----DGRF 282 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs--~DG~IrIWd~~~~~~~~l-------~~H~~~V~slaf~s~dg~~LaSgs~-----DgtV 282 (1395)
....+++++++|+++++.. .++.++||.+.++.+..+ .+|-..+.+|+| .++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~-d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKS-DGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEE-CSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEE-cCCCcEEEEcCCCCcCCCCeE
Confidence 6889999999999988864 235366666655554433 235578999999 788876665443 5789
Q ss_pred EEEECCCCCCCCCCcccccceEEEEEEec---CCCCCccEEEEeCCCCeEEEEEe----CCeEEEEEcCCCCccccccCC
Q 039790 283 FIWNITEGPDEEDKPQILGKIVVAIQILA---DGDSVHPRVCWHPHKQEILMLAI----GNRILKIDSNRVGKGERFSAE 355 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~~~i~~l~~~~---~~~~~v~~v~~sp~~~~lla~g~----~~~ii~~d~~~~~~~~~~s~~ 355 (1395)
.+||+.+++ .+..+.+-. ........++++++++.++++.. .+.+++|+.........+...
T Consensus 96 ~~~d~~tg~-----------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~ 164 (343)
T 2qe8_A 96 VAWDTLNNQ-----------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY 164 (343)
T ss_dssp EEEETTTTE-----------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred EEEECCCCe-----------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence 999998876 222222211 12234578999987777777654 567777776432111101000
Q ss_pred CCCcc-CccccccceEE--Ecc------cCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCC---CCc-----eeE--Ee
Q 039790 356 EPLKC-PVDELINGVQL--VGK------HDGEITELSMCQWLTTRLASASLDG-TVKIWDDR---KST-----PLA--VL 415 (1395)
Q Consensus 356 ~~~~~-~~~~~~~~~~~--l~~------h~~~V~slafspdg~~~LaSgs~Dg-~IrIWDl~---sg~-----~l~--tl 415 (1395)
..... ...-...+... ... ....++.|+|+|+| ++|+.+..++ .|..+|.. .+. ... ..
T Consensus 165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (343)
T 2qe8_A 165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER 243 (343)
T ss_dssp TTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE
T ss_pred CcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe
Confidence 00000 00000001000 000 11347889999998 6777777666 44444421 111 000 11
Q ss_pred cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEE
Q 039790 416 RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVA 495 (1395)
Q Consensus 416 ~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~ 495 (1395)
.++.+ ....++++ ++|.++++ ...++.|.+||..++ +........ . ..+...++
T Consensus 244 ~g~~g-~pdgia~d----~~G~l~va-~~~~~~V~~~d~~~G------------~~~~~~~~~-~-------~~~p~~va 297 (343)
T 2qe8_A 244 YSEKP-ICDGISID----KDHNIYVG-DLAHSAIGVITSADR------------AYKLLVTDE-K-------LSWTDSFN 297 (343)
T ss_dssp EEECC-SCSCEEEC----TTCCEEEE-EGGGTEEEEEETTTT------------EEEEEEECG-G-------GSCEEEEE
T ss_pred cccCC-CCceEEEC----CCCCEEEE-ccCCCeEEEEECCCC------------CEEEEEECC-c-------eecCCeeE
Confidence 23444 56789998 89877766 448899999998555 432222211 0 11234688
Q ss_pred EeCCCCEEEEEeCCCeEEEEE
Q 039790 496 LNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 496 ~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
|.++|.++++.+..+.+-+|.
T Consensus 298 ~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ECTTSCEEEEECCGGGSGGGB
T ss_pred ECCCCcEEEEeCccccccccc
Confidence 988998888877655554443
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.73 E-value=5.8e-06 Score=97.87 Aligned_cols=220 Identities=9% Similarity=0.071 Sum_probs=136.9
Q ss_pred EEEEEEecCCCEEEEEEc--CCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCC-CCCCC
Q 039790 219 VLGRQIAVNRNYICYGLK--LGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITE-GPDEE 294 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~--DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~t-g~~~~ 294 (1395)
-..+.|++||++|+++.. ++.|.|+|+.++. +..+.- .+ . ...| +...+.+++.+.||++.++++.+ ++.
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-~g-~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v-- 212 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-PD-C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTP-- 212 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-CS-E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCC--
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-CC-c-ceee-cCCCceeEEECCCCCEEEEECCCCCeE--
Confidence 445789999999988864 6899999999985 334421 11 1 2345 66677888999999999999986 441
Q ss_pred CCcccccceEEEE-EEecCCCCCc-cEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc-eEE
Q 039790 295 DKPQILGKIVVAI-QILADGDSVH-PRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING-VQL 371 (1395)
Q Consensus 295 ~~~~~~~~~i~~l-~~~~~~~~~v-~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~ 371 (1395)
+... ..+......+ ....|...++.++.++.++.++.++........ ..+ +.+... ...
T Consensus 213 ---------~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v----~~~-----~~~~~~~~~~ 274 (386)
T 3sjl_D 213 ---------EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF----LPA-----VEALTEAERA 274 (386)
T ss_dssp ---------EEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE----CCC-----EESSCHHHHH
T ss_pred ---------EEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCccee----ecc-----eecccccccc
Confidence 1000 1111111111 124665434455557778888888864321100 000 000000 000
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeC---------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCc-EEEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASL---------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHI-VLIT 441 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~---------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~-~L~s 441 (1395)
.....+....+++++++.+++++-.. .++|.++|+.+++.+.++..-. .+++|.|+ +|++ +|++
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs----~D~~~~ly~ 348 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVS----QDEKPLLYA 348 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEEC----SSSSCEEEE
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEEC----CCCCeEEEE
Confidence 00011233357778988444444321 2579999999999999987442 68999999 9997 6666
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
+...++.|.++|..++ +.+.++.....
T Consensus 349 tn~~~~~VsViD~~t~------------k~~~~i~~~~~ 375 (386)
T 3sjl_D 349 LSTGDKTLYIHDAESG------------EELRSVNQLGH 375 (386)
T ss_dssp EETTTTEEEEEETTTC------------CEEEEECCCCS
T ss_pred EcCCCCeEEEEECCCC------------cEEEEecCCCC
Confidence 5546999999999998 88888876543
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.70 E-value=1.5e-06 Score=104.57 Aligned_cols=239 Identities=10% Similarity=0.057 Sum_probs=147.8
Q ss_pred EEEEecCCCEEEEEE----------cCCeEEEEECCCCce-EEec-c------CCCCeEEEEEeeCCCCEEEEEEC--CC
Q 039790 221 GRQIAVNRNYICYGL----------KLGNIRILNIITALR-SLLR-G------HTQRVTDMAFFAEDVHLLASASV--DG 280 (1395)
Q Consensus 221 ~va~Spdg~~LasGs----------~DG~IrIWd~~~~~~-~~l~-~------H~~~V~slaf~s~dg~~LaSgs~--Dg 280 (1395)
.+.++|||++|+++. .++.|.+||..+... ..+. + +...-..++| ++||++|+.+.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~-spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL-TPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE-CTTSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE-cCCCCEEEEEecCCCC
Confidence 789999999888875 467899999998743 3332 1 1234567889 999999998874 57
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCC-CeEEEEEeCCeEEEEEcCCCCccccccCCCCCc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHK-QEILMLAIGNRILKIDSNRVGKGERFSAEEPLK 359 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~-~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~ 359 (1395)
+|.+.|+.+++ .+..+.+ .. +....|++ ..+++.+.++.+..++. ..++......
T Consensus 201 ~VsVID~~t~k-----------vv~~I~v---~g----~~~~~p~g~~~~v~~~~dG~~~~V~~-~~~~v~~~~~----- 256 (426)
T 3c75_H 201 AVGVVDLEGKT-----------FDRMLDV---PD----CYHIFPASPTVFYMNCRDGSLARVDF-ADGETKVTNT----- 256 (426)
T ss_dssp EEEEEETTTTE-----------EEEEEEC---CS----EEEEEEEETTEEEEEETTSSEEEEEC-CTTCCEEEEC-----
T ss_pred eEEEEECCCCe-----------EEEEEEc---CC----ceeeccCCCcEEEEEcCCCCEEEEEC-CCCcEEEEee-----
Confidence 89999999877 2222221 11 12233333 34445555666666665 3222100000
Q ss_pred cCccccccceEEEcccCCC-eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee--EEecCC---C---C---CCeeEEE
Q 039790 360 CPVDELINGVQLVGKHDGE-ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL--AVLRPY---D---G---HPVNCVT 427 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~~h~~~-V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l--~tl~~h---~---~---~~V~sV~ 427 (1395)
..+...... ...+.|.+++ ..++..+..+.|.+.|+..+... ..+.-- . + .....++
T Consensus 257 ----------~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va 325 (426)
T 3c75_H 257 ----------EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTA 325 (426)
T ss_dssp ----------CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEE
T ss_pred ----------eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeE
Confidence 000001111 1135678888 45555567889999998755321 111100 0 0 0223478
Q ss_pred EeecCCCCCcEEEEEec---------CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 428 FLIGPHPQHIVLITGGP---------LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 428 fs~~~~pdg~~L~s~Gs---------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
|+ +++.+++++.. .++.|.++|+.+. +.+.++...... ..+.|++
T Consensus 326 ~s----~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~------------kvv~~I~vg~~P----------~gia~sp 379 (426)
T 3c75_H 326 YH----RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG------------ERINKIELGHEI----------DSINVSQ 379 (426)
T ss_dssp EE----GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC------------CEEEEEEEEEEE----------CEEEECC
T ss_pred Ec----CCCCEEEEEecccccccccCCCCEEEEEECCCC------------eEEEEEECCCCc----------CeEEEcc
Confidence 88 88887777542 1357999999988 888888754321 2599999
Q ss_pred CCC-EEEEEe-CCCeEEEEEcCCCC
Q 039790 499 AGL-FLLANA-KKNAIYAIHMDYGP 521 (1395)
Q Consensus 499 dg~-~LaSgs-~Dg~I~iWdl~~g~ 521 (1395)
||+ +|++.. .++.|.++|+.+++
T Consensus 380 Dg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 380 DAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCC
Confidence 998 777766 69999999998864
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.65 E-value=4.9e-06 Score=100.13 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=160.0
Q ss_pred cCCCEEEEEEc-C----CeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEE----------CCCcEEEEECCC
Q 039790 226 VNRNYICYGLK-L----GNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASAS----------VDGRFFIWNITE 289 (1395)
Q Consensus 226 pdg~~LasGs~-D----G~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs----------~DgtV~IWdl~t 289 (1395)
++++++++... + +.|.++|..+.. +..+.--..+ .++| ++|+++|+.+. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~-SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVA-AEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEE-CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEE-CCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 35665555543 2 699999999985 4444433344 8999 99999888776 467899999998
Q ss_pred CCCCCCCcccccceEEEEEEecCC----CCCccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 290 GPDEEDKPQILGKIVVAIQILADG----DSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~----~~~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
++ .+..+.+-+.. ......+.|+|++++++++.. .+.+.++|......
T Consensus 159 ~~-----------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv--------------- 212 (426)
T 3c75_H 159 FL-----------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF--------------- 212 (426)
T ss_dssp CC-----------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE---------------
T ss_pred Cc-----------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE---------------
Confidence 87 33333332010 123457899999999998875 46788887754211
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEE----ecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAV----LRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~t----l~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
+..+.- .+ +....|++...+++.+.||++.+.|..+++.... +..........+.|. +++..+
T Consensus 213 -----v~~I~v-~g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~----~dg~~~ 279 (426)
T 3c75_H 213 -----DRMLDV-PD---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS----LRSGRL 279 (426)
T ss_dssp -----EEEEEC-CS---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC----TTTCEE
T ss_pred -----EEEEEc-CC---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec----CCCCEE
Confidence 122211 11 1344555556777788888888888866655532 221121012345677 888777
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc-cccccccccceEEEEeCCCCEEEEEeC----------
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA-ELRLEDAFFNQVVALNRAGLFLLANAK---------- 508 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~-i~~~~~~~~~~~l~~S~dg~~LaSgs~---------- 508 (1395)
+... ..+.|.+.|+..... ..+.++...... +.......-...++++++|.+|+....
T Consensus 280 ~~~s-~~g~V~ViD~~~~~~----------~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~ 348 (426)
T 3c75_H 280 VWPT-YTGKIFQADLTAEGA----------TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAA 348 (426)
T ss_dssp EEEB-TTSEEEEEEECSSCE----------EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSC
T ss_pred EEEe-CCCcEEEEeccCCce----------EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCC
Confidence 6655 788999999875410 111222211000 000000000113788999876655431
Q ss_pred CCeEEEEEcCCCCCCCCcceeeeeeeeccc--cEEEEecCCC-CcC-cC-CCCeEEEEEcCCCcee
Q 039790 509 KNAIYAIHMDYGPNPASTRMDYIAEFTVTM--PILSLTGTTT-DAS-PD-GEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 509 Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~--~ils~~~~~~-d~~-~s-~dg~V~lWdv~t~~i~ 569 (1395)
.+.|.++|+.+.+ .+..+.... ..+.|+.... ..+ .. +++.|.|||+.++++.
T Consensus 349 s~~VsVID~~T~k--------vv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 349 SRFVVVLNAETGE--------RINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEEEETTTCC--------EEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCe--------EEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 3579999988754 223332221 1122322220 111 12 4677777777777654
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.65 E-value=8.7e-07 Score=101.94 Aligned_cols=192 Identities=13% Similarity=0.074 Sum_probs=125.7
Q ss_pred eeeeCCCCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC-----CCCeEEEEEeeCCCCEEEE----EEC--
Q 039790 210 TKYISDPGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH-----TQRVTDMAFFAEDVHLLAS----ASV-- 278 (1395)
Q Consensus 210 ~~l~~h~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H-----~~~V~slaf~s~dg~~LaS----gs~-- 278 (1395)
..+..+...+.+++|+++|+++++...++.|.+|+.+ +....+..+ ...+.++++ .++|+++++ |..
T Consensus 79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~-d~dG~l~~td~~~g~~~~ 156 (305)
T 3dr2_A 79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIV-ARDGAIWFTDPPFGLRKP 156 (305)
T ss_dssp EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEE-CTTSCEEEECCSGGGSCG
T ss_pred EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEE-CCCCCEEEeCcCCCcccc
Confidence 3444566789999999999977666666889999987 544333221 235778999 889998886 332
Q ss_pred -----------CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC------CeEEEE
Q 039790 279 -----------DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG------NRILKI 341 (1395)
Q Consensus 279 -----------DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~------~~ii~~ 341 (1395)
.+.|+.||..+++. . .+ . .......++|++++..++++... +.|.++
T Consensus 157 ~~~~~~~~~~~~~~v~~~d~~~g~~-----------~-~~--~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~ 220 (305)
T 3dr2_A 157 SQGCPADPELAHHSVYRLPPDGSPL-----------Q-RM--A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF 220 (305)
T ss_dssp GGSCCCCCSSSCEEEEEECSSSCCC-----------E-EE--E--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred ccccccccccCCCeEEEEcCCCCcE-----------E-EE--e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence 25677788766651 0 11 1 12234579999999888877665 577777
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCC
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH 421 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~ 421 (1395)
+....+ + ...........+....+++.++| ++.++ +.+| |.+||. .++.+..+..+.
T Consensus 221 ~~~~~~----l-------------~~~~~~~~~~~~~pdgi~~d~~G-~lwv~-~~~g-v~~~~~-~g~~~~~~~~~~-- 277 (305)
T 3dr2_A 221 AWRDGA----L-------------HDRRHFASVPDGLPDGFCVDRGG-WLWSS-SGTG-VCVFDS-DGQLLGHIPTPG-- 277 (305)
T ss_dssp EEETTE----E-------------EEEEEEECCSSSCCCSEEECTTS-CEEEC-CSSE-EEEECT-TSCEEEEEECSS--
T ss_pred EecCCC----c-------------cCCeEEEECCCCCCCeEEECCCC-CEEEe-cCCc-EEEECC-CCCEEEEEECCC--
Confidence 653211 0 00011111123445678899998 54444 4454 999997 688888887665
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCC
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNR 447 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg 447 (1395)
.+.+++|. ++++.|+.+. .++
T Consensus 278 ~~~~~~f~----~d~~~L~it~-~~~ 298 (305)
T 3dr2_A 278 TASNCTFD----QAQQRLFITG-GPC 298 (305)
T ss_dssp CCCEEEEC----TTSCEEEEEE-TTE
T ss_pred ceeEEEEe----CCCCEEEEEc-CCe
Confidence 58999998 8998888766 443
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.64 E-value=5.9e-06 Score=96.08 Aligned_cols=188 Identities=13% Similarity=0.142 Sum_probs=122.1
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC-----CCCeEEEEEeeCCCCEEEEEEC------CCcEEE
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH-----TQRVTDMAFFAEDVHLLASASV------DGRFFI 284 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H-----~~~V~slaf~s~dg~~LaSgs~------DgtV~I 284 (1395)
...+.++.|+++|+++++. .+ .|.+||..++....+... ...+.+++| .++|+++++... .+.|+.
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~-d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEE-CCCCCEEEEeCCCcCCCCceEEEE
Confidence 4579999999999877754 44 599999988865544322 236889999 889987776543 245555
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcC-CCC-ccccccCCCCCccC
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSN-RVG-KGERFSAEEPLKCP 361 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~-~~~-~~~~~s~~~~~~~~ 361 (1395)
++ +++ +..+ . ........++|++++..++++.. .+.|.+|+.. ..+ .. ..
T Consensus 166 ~~--~g~------------~~~~--~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~---~~------- 218 (326)
T 2ghs_A 166 VA--KGK------------VTKL--F-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT---GK------- 218 (326)
T ss_dssp EE--TTE------------EEEE--E-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS---SC-------
T ss_pred Ee--CCc------------EEEe--e-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc---cC-------
Confidence 55 343 0111 1 11223567999999987777665 4667777753 111 10 00
Q ss_pred ccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 362 VDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
......+......+..+++.++| +++++...++.|.+||. +++.+..+..+.. .+++++|. .++++.|++
T Consensus 219 ----~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~-~~~~~af~---g~d~~~L~v 288 (326)
T 2ghs_A 219 ----AEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFI---GPDASRLLV 288 (326)
T ss_dssp ----CEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEE---STTSCEEEE
T ss_pred ----ceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECC-CCCEEEEEECCCC-CcEEEEEe---cCCCCEEEE
Confidence 00011222344567889999998 67777666789999998 6888888877765 79999996 156666655
Q ss_pred Ee
Q 039790 442 GG 443 (1395)
Q Consensus 442 ~G 443 (1395)
+.
T Consensus 289 t~ 290 (326)
T 2ghs_A 289 TS 290 (326)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.63 E-value=8e-07 Score=114.64 Aligned_cols=195 Identities=12% Similarity=0.096 Sum_probs=123.5
Q ss_pred EEEEEecCCCEEEEEEcCCe-------------EEEEECCCCc---eEEe--cc-CCCCeEEEEEeeCCCCEEEEEEC--
Q 039790 220 LGRQIAVNRNYICYGLKLGN-------------IRILNIITAL---RSLL--RG-HTQRVTDMAFFAEDVHLLASASV-- 278 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~-------------IrIWd~~~~~---~~~l--~~-H~~~V~slaf~s~dg~~LaSgs~-- 278 (1395)
..++|+ ||+.|++++.+.. |++|++.++. ...+ .. |...+.++.| ++||++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~-SpDg~~l~~~~~~~ 255 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV-TEDDRFLLISAANS 255 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE-CTTSCEEEEEEESS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE-cCCCCEEEEEEccC
Confidence 356799 9999999988754 9999998863 2333 33 4556889999 999998754432
Q ss_pred --CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC----CeEEEEEcCCCCccccc
Q 039790 279 --DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG----NRILKIDSNRVGKGERF 352 (1395)
Q Consensus 279 --DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~----~~ii~~d~~~~~~~~~~ 352 (1395)
+..|++||+.++.. .+..+..+....... |+++++.+++.+.. ..++.++.......
T Consensus 256 ~~~~~i~~~d~~~~~~-------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--- 318 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENA-------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--- 318 (693)
T ss_dssp SSCCEEEEEETTSTTC-------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG---
T ss_pred CCCcEEEEEECCCCCC-------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---
Confidence 24899999987631 011122222333333 67778878777664 35666665432110
Q ss_pred cCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceeEEecC-CCCCCeeEEEEe
Q 039790 353 SAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG--TVKIWDDRKSTPLAVLRP-YDGHPVNCVTFL 429 (1395)
Q Consensus 353 s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg--~IrIWDl~sg~~l~tl~~-h~~~~V~sV~fs 429 (1395)
....+..|...+. .|++++..++++...|+ .|++||+..+ ....+.. +.+ .+..+.++
T Consensus 319 ---------------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~-~~~~~~~~ 379 (693)
T 3iuj_A 319 ---------------HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLG-SVSGFNGK 379 (693)
T ss_dssp ---------------GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSS-EEEECCCC
T ss_pred ---------------ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCc-eEEeeecC
Confidence 0233444665555 88888843444444555 6899998744 4555543 333 57777777
Q ss_pred ecCCCCCcEEEEEecCC----CeEEEEECCCC
Q 039790 430 IGPHPQHIVLITGGPLN----RELKIWASAEE 457 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~D----g~I~IWDl~tg 457 (1395)
+++..|+... .+ ++|..||+.++
T Consensus 380 ----~d~~~l~~~~-ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 380 ----HDDPALYFGF-ENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp ----TTCSCEEEEE-ECSSSCCEEEEECTTTC
T ss_pred ----CCCCEEEEEe-cCCCCCCEEEEEECCCC
Confidence 7887766654 33 78999998776
No 222
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.62 E-value=7.4e-07 Score=105.87 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=124.1
Q ss_pred CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeE
Q 039790 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRI 338 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~i 338 (1395)
.++.+++ ++...+|++|+.|+ +++|++........ ...+. ........ ... ++.++| ++..++++ .++.+
T Consensus 39 ~~nlLai-s~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~~-~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLDI-SNSKSLFVAASGSK-AVVGELQLLRDHIT--SDSTP-LTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNAL 108 (388)
T ss_dssp CCBCEEE-ETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSCC-CCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEE
T ss_pred cccEEEE-cCCCCEEEEeCCCE-EEEEEhhHhhhhhc--ccccc-ccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcE
Confidence 6899999 88889999999985 66699764320000 00000 00001112 334 889999 66655555 88888
Q ss_pred EEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC
Q 039790 339 LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY 418 (1395)
Q Consensus 339 i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h 418 (1395)
.+|+...... ......|...+.++.+.+. .+++++.||.|.+||+..+.... +
T Consensus 109 ~v~dv~sl~~--------------------~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~ 161 (388)
T 1xip_A 109 YSLDLEELSE--------------------FRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----L 161 (388)
T ss_dssp EEEESSSTTC--------------------EEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----E
T ss_pred EEEEchhhhc--------------------cCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----c
Confidence 8887755432 2334456777888877653 38889999999999999887654 2
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccE--EEEEeccCcccccccccccceEEEE
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKC--TQTLELKSSAELRLEDAFFNQVVAL 496 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~--l~tl~~h~~~i~~~~~~~~~~~l~~ 496 (1395)
.. .|+|++|+ |+| ++.+. .||+|++|+...+ .+ ..++.............+.+..+.|
T Consensus 162 ~~-~Vs~v~WS----pkG--~~vg~-~dg~i~~~~~~~~------------~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w 221 (388)
T 1xip_A 162 AQ-NVTSFDVT----NSQ--LAVLL-KDRSFQSFAWRNG------------EMEKQFEFSLPSELEELPVEEYSPLSVTI 221 (388)
T ss_dssp EE-SEEEEEEC----SSE--EEEEE-TTSCEEEEEEETT------------EEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred cC-CceEEEEc----CCc--eEEEE-cCCcEEEEcCCCc------------cccccceecCCcccccccCCCeeEEEEEE
Confidence 33 79999999 899 45544 8999999998776 54 5556322111000001244456889
Q ss_pred eCCCCEEEEEe
Q 039790 497 NRAGLFLLANA 507 (1395)
Q Consensus 497 S~dg~~LaSgs 507 (1395)
.+++.++++-.
T Consensus 222 l~~~~flv~y~ 232 (388)
T 1xip_A 222 LSPQDFLAVFG 232 (388)
T ss_dssp SSSSEEEEEEE
T ss_pred ecCCeEEEEEc
Confidence 89999888644
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.54 E-value=3.6e-08 Score=117.19 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=97.0
Q ss_pred CCCEEEEEEcCCeEEEEECCCCce-EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEE
Q 039790 227 NRNYICYGLKLGNIRILNIITALR-SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVV 305 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~-~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~ 305 (1395)
++.+|++|+.||.|+.||..+|.. ..+.. +.+.+..+ ..++.++++++.||.|+.||..+|+............+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~-~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPT-HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecce-EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc-
Confidence 678999999999999999999853 34444 45655555 45677888888999999999998873221110000000
Q ss_pred EEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 306 AIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 306 ~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
.... ++. .++.+++++.++.++.||... ++. +..+..+. ...++
T Consensus 84 -------~~sp----~~~-~~~~v~~g~~dg~v~a~D~~t-G~~-------------------~w~~~~~~----~~~~~ 127 (369)
T 2hz6_A 84 -------QASP----CRS-SDGILYMGKKQDIWYVIDLLT-GEK-------------------QQTLSSAF----ADSLS 127 (369)
T ss_dssp -------TTCS----CC------CCCCEEEEEEEEECCC-----------------------------------------
T ss_pred -------ccCc----eEe-cCCEEEEEeCCCEEEEEECCC-CcE-------------------EEEecCCC----ccccc
Confidence 0000 111 234566666667777776543 221 11111121 13455
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCC---cEEEEEecCCCeEEEEECCCC
Q 039790 386 QWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQH---IVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 386 pdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg---~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|++ ..|++++.|+.|+.||.++|+.+..+..+. ....++. .+. ..+++++ .||.|+.||..++
T Consensus 128 p~~-~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~---~~~~~~~----~~~~~~~~v~~~~-~dg~v~a~d~~tG 193 (369)
T 2hz6_A 128 PST-SLLYLGRTEYTITMYDTKTRELRWNATYFD---YAASLPE----DDVDYKMSHFVSN-GDGLVVTVDSESG 193 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSSSCCCEEEEEE---ECCBCCC----CCTTCCCCEEEEE-TSCEEEEECTTTC
T ss_pred ccC-CEEEEEecCCEEEEEECCCCCEEEeEeccc---ccCcccc----CCccccceEEEEC-CCCEEEEEECCCC
Confidence 666 688899999999999999998877765321 2233333 321 3455544 8999999999988
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.54 E-value=7.7e-06 Score=105.20 Aligned_cols=236 Identities=12% Similarity=0.152 Sum_probs=137.6
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-Eecc--CC---CCeEE-EEEeeCCCCEEEEEE-----CCCcEEEEECCCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-LLRG--HT---QRVTD-MAFFAEDVHLLASAS-----VDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~l~~--H~---~~V~s-laf~s~dg~~LaSgs-----~DgtV~IWdl~tg~~~~ 294 (1395)
++..|++++.||.|+.||..+|.+. .+.. +. ..+.+ ..+ .++.+++.++ .||.|+.||..+|+...
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE--ECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 4567888999999999999998533 3322 11 11111 111 1454444332 37899999999998321
Q ss_pred CCcccccceEEEEEEec----------------------------CCCCCccEEEEeCCCCeEEEEEeCCe---------
Q 039790 295 DKPQILGKIVVAIQILA----------------------------DGDSVHPRVCWHPHKQEILMLAIGNR--------- 337 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~----------------------------~~~~~v~~v~~sp~~~~lla~g~~~~--------- 337 (1395)
.+.... .+......+.++++.+.+++...++.
T Consensus 198 -----------~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~ 266 (689)
T 1yiq_A 198 -----------RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQ 266 (689)
T ss_dssp -----------EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHT
T ss_pred -----------EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCC
Confidence 111100 01112235788888876666554432
Q ss_pred ----------EEEEEcCCCCccccccCCCCCccCccccccceEEEc--ccC-------CCeEEEEEecCCC--cEEEEEe
Q 039790 338 ----------ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG--KHD-------GEITELSMCQWLT--TRLASAS 396 (1395)
Q Consensus 338 ----------ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~--~h~-------~~V~slafspdg~--~~LaSgs 396 (1395)
++.+|... ++. +..+. .|. ..+....+..+|. ..|+.++
T Consensus 267 ~~gd~~y~~~v~AlD~~T-G~~-------------------~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~ 326 (689)
T 1yiq_A 267 AKGDNLFLSSIVAVNADT-GEY-------------------VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP 326 (689)
T ss_dssp TCSCCTTTTEEEEEETTT-CCE-------------------EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC
T ss_pred CCCCceeeeeEEEEEccC-Cce-------------------eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC
Confidence 55555532 221 11111 121 1122222223441 2788999
Q ss_pred CCCcEEEEeCCCCceeEEecCCCC--------------------------------------CCeeEEEEeecCCCCCcE
Q 039790 397 LDGTVKIWDDRKSTPLAVLRPYDG--------------------------------------HPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~~h~~--------------------------------------~~V~sV~fs~~~~pdg~~ 438 (1395)
.+|.|++||.++|+++........ ..-..++|+ |+...
T Consensus 327 ~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d----p~~~~ 402 (689)
T 1yiq_A 327 KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN----PDTGL 402 (689)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE----TTTTE
T ss_pred CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC----CCCCE
Confidence 999999999999998754321110 001236777 77776
Q ss_pred EEEEec--------------------------------------------CCCeEEEEECCCCCCCCCCCCcccccEEEE
Q 039790 439 LITGGP--------------------------------------------LNRELKIWASAEEEGWLLPSDIESWKCTQT 474 (1395)
Q Consensus 439 L~s~Gs--------------------------------------------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~t 474 (1395)
|++... .+|.|+.||+.++ +.+-.
T Consensus 403 ~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG------------~~~W~ 470 (689)
T 1yiq_A 403 VYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ------------QAAWE 470 (689)
T ss_dssp EEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT------------EEEEE
T ss_pred EEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC------------CeEeE
Confidence 665421 1377889999888 66666
Q ss_pred EeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 475 LELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 475 l~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+..+.... ...+...|.+|+.++.|+.|++||..+|+
T Consensus 471 ~~~~~~~~----------~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 471 VPYVTIFN----------GGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp EEESSSCC----------CCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccCCCCcc----------CccceECCCEEEEECCCCcEEEEECCCCc
Confidence 65543211 12445577888889999999999999986
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.53 E-value=4.3e-05 Score=90.16 Aligned_cols=261 Identities=11% Similarity=0.051 Sum_probs=146.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-EeccC---------CCCeE-EEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-LLRGH---------TQRVT-DMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~l~~H---------~~~V~-slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
++..|++++.+|.|+.||..+|... .+... ...+. .+.. ++..++.++.++.|+.+|..+|+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~--- 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTV--- 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCE---
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCE---
Confidence 3567888888999999999988533 22221 22232 2333 456788889999999999999872
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc--eEEEc
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING--VQLVG 373 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~l~ 373 (1395)
+..... . .......... ++.+++.+.++.++.++....... |..... .....
T Consensus 126 --------~W~~~~--~-~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~-------------W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 126 --------AWQTKV--A-GEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVK-------------WTVNLDMPSLSLR 179 (376)
T ss_dssp --------EEEEEC--S-SCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEE-------------EEEECCC-----C
T ss_pred --------EEEEeC--C-CceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEE-------------EEEeCCCCceeec
Confidence 111111 1 1111111222 446777667777888876432110 110000 00001
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCC---------e-eEEEEeecCCCCCcEEEEEe
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHP---------V-NCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~---------V-~sV~fs~~~~pdg~~L~s~G 443 (1395)
+.. ...+. + ..++.++.++.|..||..+|+.+..+....... + ....+ .+..+++++
T Consensus 180 ~~~----~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~v~~~~ 246 (376)
T 3q7m_A 180 GES----APTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV------VNGVVFALA 246 (376)
T ss_dssp CCC----CCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE------ETTEEEEEC
T ss_pred CCC----CcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE------ECCEEEEEe
Confidence 111 11222 2 467778889999999999999888776332100 1 11122 234555544
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
.++.|..+|..++ +.+....... . ..... ++..|+.++.++.|+.||..+|+.
T Consensus 247 -~~g~l~~~d~~tG------------~~~w~~~~~~--~---------~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~- 299 (376)
T 3q7m_A 247 -YNGNLTALDLRSG------------QIMWKRELGS--V---------NDFIV--DGNRIYLVDQNDRVMALTIDGGVT- 299 (376)
T ss_dssp -TTSCEEEEETTTC------------CEEEEECCCC--E---------EEEEE--ETTEEEEEETTCCEEEEETTTCCE-
T ss_pred -cCcEEEEEECCCC------------cEEeeccCCC--C---------CCceE--ECCEEEEEcCCCeEEEEECCCCcE-
Confidence 7999999999988 5554443211 0 01222 355666777888999999988752
Q ss_pred CCcceeeeeeee------ccccEEEEecCCCCcCcCCCCeEEEEEcCCCcee
Q 039790 524 ASTRMDYIAEFT------VTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 524 ~~~~~~~i~~f~------~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~ 569 (1395)
+..+. ...+.+ .+.. -.+.+.+|.|++||..++++.
T Consensus 300 -------~w~~~~~~~~~~~~~~~--~~~~-l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 300 -------LWTQSDLLHRLLTSPVL--YNGN-LVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp -------EEEECTTTTSCCCCCEE--ETTE-EEEECTTSEEEEEETTTCCEE
T ss_pred -------EEeecccCCCcccCCEE--ECCE-EEEEeCCCeEEEEECCCCcEE
Confidence 11111 111221 1211 122456789999999999875
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.52 E-value=5.2e-06 Score=97.29 Aligned_cols=222 Identities=9% Similarity=-0.001 Sum_probs=132.4
Q ss_pred CCCCCEEEEEEecCCCEEEEEEc-----CCeEEEEECCCCc-eEEecc------CCCCeEEEEEeeCC-CCEEEEEE---
Q 039790 214 SDPGLVLGRQIAVNRNYICYGLK-----LGNIRILNIITAL-RSLLRG------HTQRVTDMAFFAED-VHLLASAS--- 277 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs~-----DG~IrIWd~~~~~-~~~l~~------H~~~V~slaf~s~d-g~~LaSgs--- 277 (1395)
+|...+.+++|+++|+++++-.. ++.|.+||+.++. +..+.. +...+.+++| .++ +..+++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~v-d~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAV-DLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEE-ETTTTEEEEEECCSG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEE-ecCCCEEEEEcCccC
Confidence 46678999999999987666544 5789999999885 444432 2345789999 654 55556655
Q ss_pred CCCcEEEEECCCCCCCCCCcc---cc---cce-E--EEEEEecC------CCCCccEEEEeCCCCeEEEEEeCC-eEEEE
Q 039790 278 VDGRFFIWNITEGPDEEDKPQ---IL---GKI-V--VAIQILAD------GDSVHPRVCWHPHKQEILMLAIGN-RILKI 341 (1395)
Q Consensus 278 ~DgtV~IWdl~tg~~~~~~~~---~~---~~~-i--~~l~~~~~------~~~~v~~v~~sp~~~~lla~g~~~-~ii~~ 341 (1395)
.++.|++||+.+++....... .. ... + ..+..... .......++|++++..++++...+ .+.++
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 678999999987762111100 00 000 0 00000000 012346799999998888776654 66666
Q ss_pred EcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCC
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGH 421 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~ 421 (1395)
+........ . ........+..+ ++.+....++++++| +++++...++.|.+||..+|+...........
T Consensus 223 ~~~~~~~~~-~--------~~~~~~~~~~~~-g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~ 291 (343)
T 2qe8_A 223 KSADLSNLQ-L--------TDAELGSKIERY-SEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLS 291 (343)
T ss_dssp EHHHHTCTT-C--------CHHHHHTTCEEE-EECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGS
T ss_pred EHHHhcCCC-C--------ChhhhhcceEec-ccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCcee
Confidence 542111000 0 000000001122 344456779999998 88899888999999998667643333322123
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
.+.+|+|. ++|.+++++. ..+.+.+|
T Consensus 292 ~p~~va~~----~~g~l~v~~~-~~~~~~~f 317 (343)
T 2qe8_A 292 WTDSFNFG----SDGYLYFDCN-QLHHSAPL 317 (343)
T ss_dssp CEEEEEEC----TTSCEEEEEC-CGGGSGGG
T ss_pred cCCeeEEC----CCCcEEEEeC-cccccccc
Confidence 78999998 8888777754 44444333
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.51 E-value=9.5e-05 Score=87.21 Aligned_cols=235 Identities=9% Similarity=-0.021 Sum_probs=130.3
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceE-EeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceE
Q 039790 226 VNRNYICYGLKLGNIRILNIITALRS-LLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIV 304 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i 304 (1395)
.++..|+.++.+|.|..||..+|... .+...........+ .+..++.++.+|.|+.+|..+|+...
T Consensus 101 ~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W---------- 167 (376)
T 3q7m_A 101 VSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKW---------- 167 (376)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEE----------
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEE----------
Confidence 35667888899999999999988543 33332222222333 24578888899999999999987211
Q ss_pred EEEEEecCCC--CCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCCeEE
Q 039790 305 VAIQILADGD--SVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGEITE 381 (1395)
Q Consensus 305 ~~l~~~~~~~--~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~V~s 381 (1395)
......... ......... ++.++++..++.++.++...... .|....... ........+ ......
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~--~w~~~~~~~----~~~~~~~~~~~~~~~p--- 235 (376)
T 3q7m_A 168 -TVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQM--IWQQRISQA----TGSTEIDRLSDVDTTP--- 235 (376)
T ss_dssp -EEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCE--EEEEECCC---------------CCCCCC---
T ss_pred -EEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcE--EEEEecccC----CCCcccccccccCCCc---
Confidence 111100000 000111222 34566666677788877643211 010000000 000000000 000111
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCC
Q 039790 382 LSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWL 461 (1395)
Q Consensus 382 lafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~ 461 (1395)
.+. + ..++.++.++.|..+|..+|+.+..... + ....+... +..|+++. .++.|..||..++
T Consensus 236 -~~~--~-~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~-~~~~~~~~------~~~l~~~~-~~g~l~~~d~~tG---- 297 (376)
T 3q7m_A 236 -VVV--N-GVVFALAYNGNLTALDLRSGQIMWKREL--G-SVNDFIVD------GNRIYLVD-QNDRVMALTIDGG---- 297 (376)
T ss_dssp -EEE--T-TEEEEECTTSCEEEEETTTCCEEEEECC--C-CEEEEEEE------TTEEEEEE-TTCCEEEEETTTC----
T ss_pred -EEE--C-CEEEEEecCcEEEEEECCCCcEEeeccC--C-CCCCceEE------CCEEEEEc-CCCeEEEEECCCC----
Confidence 111 3 4677788899999999999998877653 2 35555553 44555545 7899999999988
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+.+-........... .... .+..|+.++.+|.|++||..+|+
T Consensus 298 --------~~~w~~~~~~~~~~~--------~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 298 --------VTLWTQSDLLHRLLT--------SPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp --------CEEEEECTTTTSCCC--------CCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred --------cEEEeecccCCCccc--------CCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 555444421111100 1111 24567778889999999998875
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.50 E-value=8.3e-05 Score=83.37 Aligned_cols=229 Identities=11% Similarity=0.001 Sum_probs=139.0
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE------EeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCCCCCcccc
Q 039790 228 RNYICYGLKLGNIRILNIITALRS------LLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDEEDKPQIL 300 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~------~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~ 300 (1395)
|.+|..+.. +.|+.+++++.... .+......+.+++| .++ +.++++...++.|.++++..+..
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~-d~~~~~ly~~d~~~~~I~~~~~~g~~~-------- 70 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAF-DCVDKVVYWTDISEPSIGRASLHGGEP-------- 70 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEE-ETTTTEEEEEETTTTEEEEEESSSCCC--------
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEE-ecCCCEEEEEECCCCEEEEEecCCCCc--------
Confidence 345666554 57889998875321 22222345789999 664 45555666678999999876431
Q ss_pred cceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCe
Q 039790 301 GKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEI 379 (1395)
Q Consensus 301 ~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V 379 (1395)
..+..........++++++++.++++... +.|.+++...... ...........
T Consensus 71 ------~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--------------------~~~~~~~~~~P 124 (267)
T 1npe_A 71 ------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--------------------RVLFDTGLVNP 124 (267)
T ss_dssp ------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECSSCSSE
T ss_pred ------EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--------------------EEEEECCCCCc
Confidence 11222222355689999988778777654 5666666432110 11121122467
Q ss_pred EEEEEecCCCcEEEEEeC--CCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 380 TELSMCQWLTTRLASASL--DGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 380 ~slafspdg~~~LaSgs~--Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
..++++++++.++++... .+.|..+++.. .....+. ..-. ....++|+ +++.+|..+....+.|.++|+..
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~-~P~gia~d----~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLG-LPNGLTFD----AFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCS-CEEEEEEE----TTTTEEEEEETTTTEEEEEETTE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCC-CCcEEEEc----CCCCEEEEEECCCCEEEEEecCC
Confidence 899999976455555433 46888888753 3333332 2223 68999999 88887777676789999999875
Q ss_pred CCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 457 EEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. .....+.... . ...+++. ++.++++....+.|+.++..+|+
T Consensus 199 ~------------~~~~~~~~~~-~---------P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 199 P------------GRRKVLEGLQ-Y---------PFAVTSY-GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp E------------EEEEEEECCC-S---------EEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred C------------ceEEEecCCC-C---------ceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence 4 3222222111 1 0135554 56666777677899999987653
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.49 E-value=2e-05 Score=90.59 Aligned_cols=218 Identities=11% Similarity=0.068 Sum_probs=137.4
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 228 RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
+..|..|+.+|.|..||........+..+...+.++.+ ..++. |..++.++.|+.||.. ++ .+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~-~~~g~-l~vgt~~~~l~~~d~~-g~--------------~~ 169 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIV-SEDGT-IYVGSNDNYLYAINPD-GT--------------EK 169 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEE-CTTSC-EEEECTTSEEEEECTT-SC--------------EE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEE-cCCCE-EEEEcCCCEEEEECCC-CC--------------Ee
Confidence 55678888899999999983334444445555677777 55665 5567788999999988 65 11
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
.........+..+.+..++. +++++ +.++.++ .. +.. ...+......+.++.+.++
T Consensus 170 ~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~-g~~-------------------~~~~~~~~~~~~~~~~~~~ 225 (330)
T 3hxj_A 170 WRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PD-GTE-------------------KWNFYAGYWTVTRPAISED 225 (330)
T ss_dssp EEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TT-SCE-------------------EEEECCSSCCCSCCEECTT
T ss_pred EEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CC-CcE-------------------EEEEccCCcceeceEECCC
Confidence 11222234455666666664 44444 8888887 22 211 2222333456778888887
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 388 LTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 388 g~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
| .|..++.++.|..|| .++..+..+..... .+.++.+. .+|...+ +. .++.|..||. ++
T Consensus 226 g--~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~-~~~~~~~~----~~g~l~v-~t-~~ggl~~~d~-~g---------- 284 (330)
T 3hxj_A 226 G--TIYVTSLDGHLYAIN-PDGTEKWRFKTGKR-IESSPVIG----NTDTIYF-GS-YDGHLYAINP-DG---------- 284 (330)
T ss_dssp S--CEEEEETTTEEEEEC-TTSCEEEEEECSSC-CCSCCEEC----TTSCEEE-EC-TTCEEEEECT-TS----------
T ss_pred C--eEEEEcCCCeEEEEC-CCCCEeEEeeCCCC-ccccceEc----CCCeEEE-ec-CCCCEEEECC-CC----------
Confidence 6 456677788898897 56777777765544 55666665 5665444 34 7889999995 55
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
+.+..+......+ ..+....+|.++ .++.+|.+++.....
T Consensus 285 --~~~~~~~~~~~~~---------~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 285 --TEKWNFETGSWII---------ATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp --CEEEEEECSSCCC---------SCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred --cEEEEEEcCCccc---------cceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 5555555433222 235666777755 478899999887654
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.47 E-value=0.00024 Score=79.51 Aligned_cols=206 Identities=9% Similarity=-0.008 Sum_probs=132.7
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEec-cCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEECCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLLR-GHTQRVTDMAFFAED-VHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l~-~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
..+.+++|++++.+|+.+ ..++.|.+++..++....+. ..-.....|+| .++ +.++++....+.|.++++.....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~-d~~~~~lyv~d~~~~~I~~~~~~g~~~- 113 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIAL-DHLGRTIFWTDSQLDRIEVAKMDGTQR- 113 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEE-EecCCeEEEEECCCCEEEEEEcCCCCE-
Confidence 356789999977666655 45789999999876543332 22356889999 665 45555556678999999874320
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC---CeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG---NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~---~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
..+..........++++++++.++++... +.|.+++...... ..
T Consensus 114 -------------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--------------------~~ 160 (267)
T 1npe_A 114 -------------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------------------RI 160 (267)
T ss_dssp -------------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--------------------EE
T ss_pred -------------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--------------------EE
Confidence 01112222345689999988888877654 4666666422110 11
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
.....-.....++|+++++.++++-...+.|.++|...+.....+.+. . ....+++. +.+|+.+...++.|.
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d------~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY------GKNLYYTDWKTNSVI 232 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE------TTEEEEEETTTTEEE
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-C-CceEEEEe------CCEEEEEECCCCeEE
Confidence 111223467899999987556666667789999998765443344332 2 45677763 445555554678999
Q ss_pred EEECCCCCCCCCCCCcccccEEEEEec
Q 039790 451 IWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 451 IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
++|..++ +.+.++..
T Consensus 233 ~~d~~~g------------~~~~~i~~ 247 (267)
T 1npe_A 233 AMDLAIS------------KEMDTFHP 247 (267)
T ss_dssp EEETTTT------------EEEEEECC
T ss_pred EEeCCCC------------CceEEEcc
Confidence 9999887 77777754
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.43 E-value=3.9e-05 Score=91.53 Aligned_cols=239 Identities=13% Similarity=0.071 Sum_probs=143.7
Q ss_pred EEe--cCCCEEEEE-EcCCeEEEEECCCC----c-eEEec------cCC-CCeEEEEEeeCCCCEEEEEECC------Cc
Q 039790 223 QIA--VNRNYICYG-LKLGNIRILNIITA----L-RSLLR------GHT-QRVTDMAFFAEDVHLLASASVD------GR 281 (1395)
Q Consensus 223 a~S--pdg~~LasG-s~DG~IrIWd~~~~----~-~~~l~------~H~-~~V~slaf~s~dg~~LaSgs~D------gt 281 (1395)
.++ .++++|+.. ..++.|+|+|+.+. . ..++. .+. ..-..+.+ .++| +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~-~pdG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHC-GPDA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEE-CSSC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeE-CCCe-EEEEcCCCcCCCCCCe
Confidence 346 788887665 56789999999754 2 22331 111 13345566 7888 88887776 78
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE-------------------eCCeEEEEE
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA-------------------IGNRILKID 342 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g-------------------~~~~ii~~d 342 (1395)
|.++|..+++ .+..+..-.......+.+-|+|+++.++++. .++.|.+|+
T Consensus 166 v~vlD~~T~~-----------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 166 ILMLDHYSFE-----------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp EEEECTTTCC-----------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred EEEEECCCCe-----------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 9999999887 1111111112234456789999998666663 267788887
Q ss_pred cCCCCccccccCCCCCccCccccccceEEEcc--cCCCeEEEEE--ecCCCcEEEEEe-----CCCcEEEEeCCCCc--e
Q 039790 343 SNRVGKGERFSAEEPLKCPVDELINGVQLVGK--HDGEITELSM--CQWLTTRLASAS-----LDGTVKIWDDRKST--P 411 (1395)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~--h~~~V~slaf--spdg~~~LaSgs-----~Dg~IrIWDl~sg~--~ 411 (1395)
... ++. +..+.- .......|.| +|++...++++- .+++|.+|....|. .
T Consensus 235 ~~~-~k~-------------------~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~ 294 (462)
T 2ece_A 235 LRK-RKR-------------------IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA 294 (462)
T ss_dssp TTT-TEE-------------------EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE
T ss_pred CCC-CcE-------------------eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE
Confidence 643 111 222221 1123445555 999844444555 67788877655442 2
Q ss_pred eEEe--cCC---------------CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEE
Q 039790 412 LAVL--RPY---------------DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQT 474 (1395)
Q Consensus 412 l~tl--~~h---------------~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~t 474 (1395)
++.+ ... .+..+..|.++ +||++|.++.-..+.|.+||+... ...+.+..
T Consensus 295 ~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS----~DGrfLYVSnrg~d~VavfdV~d~---------~~~~lv~~ 361 (462)
T 2ece_A 295 EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS----LDDKFLYLSLWGIGEVRQYDISNP---------FKPVLTGK 361 (462)
T ss_dssp EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC----TTSCEEEEEETTTTEEEEEECSST---------TSCEEEEE
T ss_pred EEEEeCCCccccccccccccccccCCCceeEEEEC----CCCCEEEEEeCCCCEEEEEEecCC---------CCcEEEEE
Confidence 2221 110 01257899999 999999998878899999999643 33466666
Q ss_pred EeccCccc-----ccccccccceEEEEeCCCCEEEEEe
Q 039790 475 LELKSSAE-----LRLEDAFFNQVVALNRAGLFLLANA 507 (1395)
Q Consensus 475 l~~h~~~i-----~~~~~~~~~~~l~~S~dg~~LaSgs 507 (1395)
+...+... ........-+.+.+++||++|+++.
T Consensus 362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 65432100 0000000123589999999888776
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.42 E-value=3.2e-05 Score=99.21 Aligned_cols=237 Identities=13% Similarity=0.104 Sum_probs=140.3
Q ss_pred CCCEEEEEEcCCeEEEEECCCCce-EEeccC-C----CCeEE-EEEeeCCCCEEEEEEC------CCcEEEEECCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALR-SLLRGH-T----QRVTD-MAFFAEDVHLLASASV------DGRFFIWNITEGPDE 293 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~-~~l~~H-~----~~V~s-laf~s~dg~~LaSgs~------DgtV~IWdl~tg~~~ 293 (1395)
++..|++++.|+.|..||..+|.. -.+..+ . ..+.+ ..+ .++ .++.++. +|.|+.||..+|+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKG-KVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECC-EEEEEecccccCCCCEEEEEECCCCcEE
Confidence 467888889999999999999853 344333 1 12221 122 134 4444443 799999999999832
Q ss_pred CCCcccccceEEEEEEec-----------------------------CCCCCccEEEEeCCCCeEEEEEeCC--------
Q 039790 294 EDKPQILGKIVVAIQILA-----------------------------DGDSVHPRVCWHPHKQEILMLAIGN-------- 336 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~-----------------------------~~~~~v~~v~~sp~~~~lla~g~~~-------- 336 (1395)
. .+.... .+......+.++++++.+++...++
T Consensus 204 W-----------~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~ 272 (677)
T 1kb0_A 204 W-----------RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVR 272 (677)
T ss_dssp E-----------EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred E-----------EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCC
Confidence 1 111111 0111223578888887777655432
Q ss_pred -----------eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC-------CCeEEEEEecCCC--cEEEEEe
Q 039790 337 -----------RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD-------GEITELSMCQWLT--TRLASAS 396 (1395)
Q Consensus 337 -----------~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~-------~~V~slafspdg~--~~LaSgs 396 (1395)
.++.+|... ++. .| . .....|+ .....+.+..+|. .+|+.++
T Consensus 273 ~~~~gd~~~~~sv~AlD~~T-G~~-~W-----------~-----~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~ 334 (677)
T 1kb0_A 273 SPKGGDNLYLASIVALDPDT-GKY-KW-----------H-----YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP 334 (677)
T ss_dssp STTCCCCTTTTEEEEECTTT-CCE-EE-----------E-----EESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC
T ss_pred CccCCCCeeeEEEEEEECCC-CCE-EE-----------E-----EecCCCcccccccCCCcEEEecccCCcEeeEEEEEC
Confidence 255554432 211 01 0 0111121 1222233334552 4789999
Q ss_pred CCCcEEEEeCCCCceeEEecCCCC----------CCe------------------------eEEEEeecCCCCCcEEEEE
Q 039790 397 LDGTVKIWDDRKSTPLAVLRPYDG----------HPV------------------------NCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~~h~~----------~~V------------------------~sV~fs~~~~pdg~~L~s~ 442 (1395)
.+|.|+++|..+|+.+..+..... .++ ..++|+ |++.++++.
T Consensus 335 ~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d----p~~~~~yv~ 410 (677)
T 1kb0_A 335 KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN----PQTGLVYLP 410 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE----TTTTEEEEE
T ss_pred CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc----CCCCEEEEe
Confidence 999999999999999877652210 011 256787 887777764
Q ss_pred ec------------------------------------------CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 443 GP------------------------------------------LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 443 Gs------------------------------------------~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
.. ..+.|..||+.++ +.+-.+.....
T Consensus 411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG------------~~~W~~~~~~~ 478 (677)
T 1kb0_A 411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ------------KAAWSVEHVSP 478 (677)
T ss_dssp EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT------------EEEEEEEESSS
T ss_pred ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC------------cEEeecCCCCC
Confidence 31 1277999999888 66655553321
Q ss_pred ccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 481 AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 481 ~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. . ...+..+|.+++.++.||.|++||..+|+
T Consensus 479 ~-~---------~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 479 W-N---------GGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp C-C---------CCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred C-c---------CcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 1 1 13345677788888999999999999876
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.39 E-value=7.5e-06 Score=96.82 Aligned_cols=81 Identities=6% Similarity=-0.029 Sum_probs=61.9
Q ss_pred EEEecCCCcEEEEEe---C-----CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec-CCCeEEEE
Q 039790 382 LSMCQWLTTRLASAS---L-----DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP-LNRELKIW 452 (1395)
Q Consensus 382 lafspdg~~~LaSgs---~-----Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs-~Dg~I~IW 452 (1395)
++|++|+.+++++.. . ++.+.+||+.+++.+.++.... ....++|+ +||++++.+.. .+++|.+|
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s----~Dg~~l~va~~~~~~~VsVI 342 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAA----QDGASDNYANSAGTEVLDIY 342 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEEC----CSSSCEEEEEETTTTEEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEEC----CCCCEEEEEccCCCCeEEEE
Confidence 689999854444443 2 2356699999999999887554 58999999 99986555554 48999999
Q ss_pred ECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 453 ASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 453 Dl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
|+.++ +.+.++.....
T Consensus 343 D~~t~------------kvv~~I~vg~~ 358 (368)
T 1mda_H 343 DAASD------------QDQSSVELDKG 358 (368)
T ss_dssp ESSSC------------EEEEECCCCSC
T ss_pred ECCCC------------cEEEEEECCCC
Confidence 99988 88888875543
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.37 E-value=2e-07 Score=110.84 Aligned_cols=182 Identities=10% Similarity=0.029 Sum_probs=87.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCc
Q 039790 269 DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGK 348 (1395)
Q Consensus 269 dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~ 348 (1395)
++.+|++++.||.|+.||..+|+. +..+.. ..+.+..+..++..+++.+.++.++.|+... ++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-----------~W~~~~-----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~ 70 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-----------KWTLKE-----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NE 70 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-----------EEEEEC-----CCSCCCC-----CCEEECTTTCCEEEC------C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-----------EEEecC-----CCceecceEcCCCEEEEeCCCCEEEEEECCC-Cc
Confidence 578899999999999999999882 222221 2233333444554444445677777776532 21
Q ss_pred cccccCCCCCccCccccccceEEEcccC-CCeE-EEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEE
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHD-GEIT-ELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCV 426 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~-~~V~-slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV 426 (1395)
. +..+..+. ..+. +..+. ++ ..|++|+.|+.|+.||..+|+.+..+..+.. +
T Consensus 71 ~-------------------~w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-----~ 124 (369)
T 2hz6_A 71 G-------------------LTKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-----D 124 (369)
T ss_dssp C-------------------SEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------------
T ss_pred e-------------------eeeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCCc-----c
Confidence 1 00111010 0000 00111 23 4677888999999999999999888876532 3
Q ss_pred EEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC---CEE
Q 039790 427 TFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG---LFL 503 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg---~~L 503 (1395)
.++ |++..|++++ .|+.|+.||.+++ +.+..+...... ...+..++ ..+
T Consensus 125 ~~~----p~~~~v~~~~-~dg~v~a~d~~tG------------~~~W~~~~~~~~-----------~~~~~~~~~~~~~v 176 (369)
T 2hz6_A 125 SLS----PSTSLLYLGR-TEYTITMYDTKTR------------ELRWNATYFDYA-----------ASLPEDDVDYKMSH 176 (369)
T ss_dssp ------------EEEEE-EEEEEECCCSSSS------------SCCCEEEEEEEC-----------CBCCCCCTTCCCCE
T ss_pred ccc----ccCCEEEEEe-cCCEEEEEECCCC------------CEEEeEeccccc-----------CccccCCccccceE
Confidence 455 6777888765 8999999999988 333333221100 01122221 345
Q ss_pred EEEeCCCeEEEEEcCCCC
Q 039790 504 LANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 504 aSgs~Dg~I~iWdl~~g~ 521 (1395)
+.++.||.|+.||..+|+
T Consensus 177 ~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 177 FVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp EEEETSCEEEEECTTTCC
T ss_pred EEECCCCEEEEEECCCCc
Confidence 667889999999998875
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.35 E-value=2.3e-05 Score=92.64 Aligned_cols=240 Identities=8% Similarity=-0.070 Sum_probs=135.0
Q ss_pred eEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEE----------CCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 239 NIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASAS----------VDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 239 ~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs----------~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
.|.++|..+++ +..+..-..+ .+.| ++|+++++.+. .+++|.+||+.+++ .+..+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~-spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-----------vv~~I 112 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVA-GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-----------PIADI 112 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEE-CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-----------EEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEE-CCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-----------EEEEE
Confidence 88899999985 4455433345 7999 99999888886 37899999999987 33333
Q ss_pred EEecCC----CCCccEEEEeCCCCeEEEEEeC--CeEEE--EEcCCCCccc---c--ccCCCCCccCccccccceEEEcc
Q 039790 308 QILADG----DSVHPRVCWHPHKQEILMLAIG--NRILK--IDSNRVGKGE---R--FSAEEPLKCPVDELINGVQLVGK 374 (1395)
Q Consensus 308 ~~~~~~----~~~v~~v~~sp~~~~lla~g~~--~~ii~--~d~~~~~~~~---~--~s~~~~~~~~~~~~~~~~~~l~~ 374 (1395)
.+-+.. ......+.++|++++++++..+ +.+.+ ||........ + +..++.........-..+..+..
T Consensus 113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEEC
Confidence 322111 1234579999999999888753 44555 5553310000 0 00000000000000000001100
Q ss_pred cC-----CCeE------------EEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eeEEecCC------CC---CCeeEE
Q 039790 375 HD-----GEIT------------ELSMCQWLTTRLASASLDGTVKIWDDRKST--PLAVLRPY------DG---HPVNCV 426 (1395)
Q Consensus 375 h~-----~~V~------------slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h------~~---~~V~sV 426 (1395)
-. +.+. -.. ++++ ..++..+. +.|.+.|+..+. .+..+... .+ .....+
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYP-GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBCSCCEE-ETTT-TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred ccccccCCeEEEEeeeeeeCCCCccc-cccC-CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 00 0000 002 4444 33333344 788888876532 22222211 01 012237
Q ss_pred EEeecCCCCCcEEEEEec---C-----CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 427 TFLIGPHPQHIVLITGGP---L-----NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 427 ~fs~~~~pdg~~L~s~Gs---~-----Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
+|+ +|+++++++.. . ++.+.+||+.+. +.+.++...... ..++|++
T Consensus 270 ~~s----~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~------------~vv~~i~vg~~p----------~gi~~s~ 323 (368)
T 1mda_H 270 AKL----KNTDGIMILTVEHSRSCLAAAENTSSVTASVG------------QTSGPISNGHDS----------DAIIAAQ 323 (368)
T ss_dssp EEE----TTTTEEEEEEEECSSCTTSCEEEEEEEESSSC------------CEEECCEEEEEE----------CEEEECC
T ss_pred EEc----CCCCEEEEEeccccCcccccCCCEEEEECCCC------------eEEEEEECCCCc----------ceEEECC
Confidence 898 99988887542 1 235669999988 777777654421 2599999
Q ss_pred CCC-EEEEEe-CCCeEEEEEcCCCC
Q 039790 499 AGL-FLLANA-KKNAIYAIHMDYGP 521 (1395)
Q Consensus 499 dg~-~LaSgs-~Dg~I~iWdl~~g~ 521 (1395)
||+ +++++. .++.|.+||+.+++
T Consensus 324 Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 324 DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCEEEEEccCCCCeEEEEECCCCc
Confidence 997 667777 59999999998754
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.34 E-value=4.2e-05 Score=98.35 Aligned_cols=206 Identities=11% Similarity=0.003 Sum_probs=108.3
Q ss_pred CCEEEEEEcCCeEEEEECCCCce-EEeccCCC----------Ce-EEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALR-SLLRGHTQ----------RV-TDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~-~~l~~H~~----------~V-~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
+..|++++.++.|+-||..+|+. -.+..+.. .+ ..+++ ++..|+.++.|+.|+.||..+|+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~TG~~--- 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV---WKGKVYVGVLDGRLEAIDAKTGQR--- 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCE---
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE---ECCEEEEEccCCEEEEEECCCCCE---
Confidence 55677778889999999998853 33332211 01 12333 356788899999999999999982
Q ss_pred CcccccceEEEEEEecCCC--CCcc-EEEEeCCCCeEEEEEe------CCeEEEEEcCCCCccccccC--CCCCcc----
Q 039790 296 KPQILGKIVVAIQILADGD--SVHP-RVCWHPHKQEILMLAI------GNRILKIDSNRVGKGERFSA--EEPLKC---- 360 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~--~~v~-~v~~sp~~~~lla~g~------~~~ii~~d~~~~~~~~~~s~--~~~~~~---- 360 (1395)
+.......+.. ..+. ...+ .++.+++++. ++.++.+|.......-.+.. ..+...
T Consensus 144 --------~W~~~~~~~~~~~~~~~~sP~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~ 213 (689)
T 1yiq_A 144 --------AWSVDTRADHKRSYTITGAPRV--VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGK 213 (689)
T ss_dssp --------EEEEECCSCTTSCCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSH
T ss_pred --------eeeecCcCCCCCCccccCCcEE--ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccc
Confidence 11221110100 0110 0011 1334444432 35566666543221100000 000000
Q ss_pred ------CccccccceEEE-cccCCCeEEEEEecCCCcEEEEEeCCCc-------------------EEEEeCCCCceeEE
Q 039790 361 ------PVDELINGVQLV-GKHDGEITELSMCQWLTTRLASASLDGT-------------------VKIWDDRKSTPLAV 414 (1395)
Q Consensus 361 ------~~~~~~~~~~~l-~~h~~~V~slafspdg~~~LaSgs~Dg~-------------------IrIWDl~sg~~l~t 414 (1395)
..|.- ..... .++......+++++++ .+|+.++.++. |..||..+|+.+..
T Consensus 214 ~~~~~~~~~~g--~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 214 GMEIAAKTWFG--DAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp HHHHHHTTCCS--STHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred cccccccccCC--ceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 00000 00000 0112222367888887 68888887764 99999999999988
Q ss_pred ecC--CCC------CCeeEEEEeecCCCCCc---EEEEEecCCCeEEEEECCCC
Q 039790 415 LRP--YDG------HPVNCVTFLIGPHPQHI---VLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 415 l~~--h~~------~~V~sV~fs~~~~pdg~---~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
+.. |.. ..+...... .+|+ .|+. ++.+|.|++||..+|
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~----~~G~~~~~v~~-~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELP----IDGKPRKVLMQ-APKNGFFYVIDRATG 339 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEE----ETTEEEEEEEE-CCTTSEEEEEETTTC
T ss_pred eecCCcccccccCCCCcEEEeec----cCCcEEEEEEE-ECCCCeEEEEECCCC
Confidence 764 321 011112222 2454 5555 559999999999998
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.25 E-value=0.00013 Score=93.48 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=59.6
Q ss_pred CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc
Q 039790 399 GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK 478 (1395)
Q Consensus 399 g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h 478 (1395)
|.|..||+.+|+.+..+... . .+....+. .++..++++ +.|+.|++||.+++ +.+.++...
T Consensus 457 g~l~A~D~~tG~~~W~~~~~-~-~~~~g~~~----~~g~~v~~g-~~dg~l~a~D~~tG------------~~lw~~~~~ 517 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHV-S-PWNGGTLT----TAGNVVFQG-TADGRLVAYHAATG------------EKLWEAPTG 517 (677)
T ss_dssp EEEEEEETTTTEEEEEEEES-S-SCCCCEEE----ETTTEEEEE-CTTSEEEEEETTTC------------CEEEEEECS
T ss_pred cEEEEEeCCCCcEEeecCCC-C-CCcCcceE----eCCCEEEEE-CCCCcEEEEECCCC------------ceeeeeeCC
Confidence 78999999999998888643 2 45555666 567777775 49999999999999 889888866
Q ss_pred CcccccccccccceEEEEeCCCCEEEEE
Q 039790 479 SSAELRLEDAFFNQVVALNRAGLFLLAN 506 (1395)
Q Consensus 479 ~~~i~~~~~~~~~~~l~~S~dg~~LaSg 506 (1395)
...... -+.+..+|+.+++.
T Consensus 518 ~~~~~~--------p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 518 TGVVAA--------PSTYMVDGRQYVSV 537 (677)
T ss_dssp SCCCSC--------CEEEEETTEEEEEE
T ss_pred CCcccC--------CEEEEeCCEEEEEE
Confidence 543221 36667788755443
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.24 E-value=0.00016 Score=81.15 Aligned_cols=208 Identities=10% Similarity=-0.024 Sum_probs=131.6
Q ss_pred cceeeeeCCC--CCEEEEEEecCCCEEEEEEc--CCeEEEEECCCCceE-Eec-cCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 207 TPITKYISDP--GLVLGRQIAVNRNYICYGLK--LGNIRILNIITALRS-LLR-GHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 207 ~~i~~l~~h~--~~V~~va~Spdg~~LasGs~--DG~IrIWd~~~~~~~-~l~-~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
+.+.++. |. ....++.|++|+.+.++.+. ++.|+++|..++.+. .+. +.......+++ . ++.+.++.-.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~-~-g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL-L-NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE-E-TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE-e-CCEEEEEEecCC
Confidence 3444553 33 34689999998754444443 589999999998533 322 12223345666 2 334555555688
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.|.++|..+.+ .+..+.. + ... ...++++++.++++..++.+..+|.......
T Consensus 87 ~v~viD~~t~~-----------v~~~i~~-g--~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~----------- 139 (266)
T 2iwa_A 87 IGFIYDRRTLS-----------NIKNFTH-Q--MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLI----------- 139 (266)
T ss_dssp EEEEEETTTTE-----------EEEEEEC-C--SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEE-----------
T ss_pred EEEEEECCCCc-----------EEEEEEC-C--CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEE-----------
Confidence 99999999876 2222221 1 111 1335557888888776777777776442211
Q ss_pred CccccccceEEEccc---CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC------------CCCCeeE
Q 039790 361 PVDELINGVQLVGKH---DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY------------DGHPVNC 425 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h---~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h------------~~~~V~s 425 (1395)
. ......+ -..++.+.|. +| .+++....++.|.+.|..+++.+.++... .....+.
T Consensus 140 ------~-~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 140 ------K-KHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp ------E-EEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred ------E-EEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEE
Confidence 0 0111111 1246788888 66 66666667899999999999999988632 1125689
Q ss_pred EEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 426 VTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 426 V~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|+|+ |+++.|+++|...+.|.+.++...
T Consensus 211 Ia~~----~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 211 IAWD----QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEE----TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEc----CCCCEEEEECCCCCeEEEEEEecc
Confidence 9999 998888777878888888887654
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.21 E-value=4.1e-05 Score=94.36 Aligned_cols=251 Identities=9% Similarity=-0.015 Sum_probs=149.4
Q ss_pred cCCCEEEEEEc-CCeEEEEECCCCc-eEEec-cCCCCeEEEEEee-CCCCEEEEEE------------------CCCcEE
Q 039790 226 VNRNYICYGLK-LGNIRILNIITAL-RSLLR-GHTQRVTDMAFFA-EDVHLLASAS------------------VDGRFF 283 (1395)
Q Consensus 226 pdg~~LasGs~-DG~IrIWd~~~~~-~~~l~-~H~~~V~slaf~s-~dg~~LaSgs------------------~DgtV~ 283 (1395)
+||++|+.... ++.|.+.|+.+.+ ...+. ........++|.. +++.++++++ .++.|.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38899888765 5679999999974 33222 1234578888855 8999998885 245788
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---------------eEEEEEcCCCCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---------------RILKIDSNRVGK 348 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---------------~ii~~d~~~~~~ 348 (1395)
++|..+.+ .+..+.+-+ ....+.+++++.++++++.+. .+.+++..+...
T Consensus 179 vID~~t~~-----------v~~qI~Vgg----~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 179 AVDADKWE-----------VAWQVLVSG----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp EEETTTTE-----------EEEEEEESS----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred EEECCCCe-----------EEEEEEeCC----CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 99988765 222232211 234578999999998888653 344444322110
Q ss_pred cccccCCCCCc----cCcccccc----c-eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---------
Q 039790 349 GERFSAEEPLK----CPVDELIN----G-VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--------- 410 (1395)
Q Consensus 349 ~~~~s~~~~~~----~~~~~~~~----~-~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--------- 410 (1395)
+..++... +.+-+..+ . +..+. -.....++.|+|||...++++..+.+|.++|+.+.+
T Consensus 244 ---~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 244 ---AIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp ---HHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred ---eccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 00011100 00000000 1 11221 123456799999995566666678999999998653
Q ss_pred ---eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccc
Q 039790 411 ---PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLED 487 (1395)
Q Consensus 411 ---~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~ 487 (1395)
.+..+.. +.....++|+ ++| ++.++...|++|.+||+.+..+.+ ...+....+.++..|-.....
T Consensus 320 ~~~v~~~v~v--G~gP~h~aF~----~dG-~aY~t~~ldsqV~kwdi~~a~~~~--~g~~~~~vi~kidV~yqpGh~--- 387 (595)
T 1fwx_A 320 RSAVVAEPEL--GLGPLHTAFD----GRG-NAYTSLFLDSQVVKWNIEDAIRAY--AGEKVDPIKDKLDVHYQPGHL--- 387 (595)
T ss_dssp GGGEEECCBC--CSCEEEEEEC----TTS-EEEEEETTTTEEEEEEHHHHHHHH--HTCSCCCEEEEEECSSCEEEE---
T ss_pred ccceEEEcCC--CCCcceEEEC----CCC-eEEEEEecCCcEEEEEhhHhhhhh--cccccceeEEEeecccccccc---
Confidence 3334432 2368999999 999 666667799999999997620000 001123678888776432100
Q ss_pred cccceEEEEeCCCCEEEEEeC
Q 039790 488 AFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 488 ~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
.......+++||++|++...
T Consensus 388 -~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 388 -KTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp -EETTTTSTTCCSSEEEEEES
T ss_pred -eeccceEeCCCCCEEEEcCC
Confidence 00011345799999988763
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.21 E-value=0.00013 Score=84.20 Aligned_cols=241 Identities=8% Similarity=-0.032 Sum_probs=140.7
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc--------------------CCCCeEEEEEeeC-CCCEEEE
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG--------------------HTQRVTDMAFFAE-DVHLLAS 275 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~--------------------H~~~V~slaf~s~-dg~~LaS 275 (1395)
....+++|.++|++++++..++.|..||..++....+.. ....+..|++ .+ +++ |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~-~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY-NLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE-ETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEE-cCCCCc-EEE
Confidence 345677899999978888889999999988765444321 1135789999 65 555 455
Q ss_pred EECCCcEEEEECCCCCCCCCCcccccceEEEEE-Eec-CCCCCccEEEEeC-CCCeEEEEEeC-----------------
Q 039790 276 ASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ-ILA-DGDSVHPRVCWHP-HKQEILMLAIG----------------- 335 (1395)
Q Consensus 276 gs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~-~~~-~~~~~v~~v~~sp-~~~~lla~g~~----------------- 335 (1395)
+...+.|..+|..++.. ..+. ... ........+++.+ ++. ++++...
T Consensus 97 ~d~~~~i~~~d~~~g~~------------~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA------------TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EETTTEEEEECTTCEEC------------EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCC
T ss_pred EECCCCEEEEeCCCCEE------------EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCC
Confidence 55555688888765431 0110 011 1112345688888 764 5444332
Q ss_pred -CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--ee
Q 039790 336 -NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKST--PL 412 (1395)
Q Consensus 336 -~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~--~l 412 (1395)
+.+++++.... . +..+...-...+.|+|++++..++++-+.++.|.+||+.... ..
T Consensus 164 ~g~v~~~d~~~~-~--------------------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~ 222 (322)
T 2fp8_A 164 TGRLIKYDPSTK-E--------------------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA 222 (322)
T ss_dssp CEEEEEEETTTT-E--------------------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE
T ss_pred CceEEEEeCCCC-E--------------------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc
Confidence 34555543211 0 111111123456799999983344555667899999987521 12
Q ss_pred EEecCCCCCCeeEEEEeecCCCCCcEEEEEecC----------CCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccc
Q 039790 413 AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPL----------NRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAE 482 (1395)
Q Consensus 413 ~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~----------Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i 482 (1395)
..+....+ ...+++. ++|.++++.. . .+.|..+|.. + +.+..+....+..
T Consensus 223 ~~~~~~~g--P~gi~~d----~~G~l~va~~-~~~~~~~~~~~~~~v~~~d~~-G------------~~~~~~~~~~g~~ 282 (322)
T 2fp8_A 223 EVLVKIPN--PGNIKRN----ADGHFWVSSS-EELDGNMHGRVDPKGIKFDEF-G------------NILEVIPLPPPFA 282 (322)
T ss_dssp EEEEECSS--EEEEEEC----TTSCEEEEEE-EETTSSTTSCEEEEEEEECTT-S------------CEEEEEECCTTTT
T ss_pred ceEEeCCC--CCCeEEC----CCCCEEEEec-CcccccccCCCccEEEEECCC-C------------CEEEEEECCCCCc
Confidence 22221222 7788998 8998776654 3 4567788763 4 6666666543221
Q ss_pred ccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 483 LRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 483 ~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.. ....+++ .+|.+++++..++.|..+++..
T Consensus 283 ----~~-~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 283 ----GE-HFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ----TS-CCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ----cc-cceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 01 1123444 4677777777888999998754
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.18 E-value=6.1e-05 Score=86.54 Aligned_cols=221 Identities=14% Similarity=0.081 Sum_probs=129.9
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcc
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~ 298 (1395)
+.++.+..+|. |..|+.+ |..||.....+..+..+........+ . +..|..++.++.|+.||.. ++
T Consensus 62 ~~~~~~~~~g~-l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~-~--~~~l~v~t~~~~l~~~d~~-g~------- 127 (330)
T 3hxj_A 62 ECRPSIGKDGT-IYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTI-F--EDILYVTSMDGHLYAINTD-GT------- 127 (330)
T ss_dssp EECCEETTTTE-ECCSSCE--EEEECCCGGGGGGSCC-----CCEEE-E--TTEEEEECTTSEEEEECTT-SC-------
T ss_pred ccceEEecCCc-EEEecCc--EEEECCCCcEEEEEECCCCcccCceE-E--CCEEEEEecCCEEEEEcCC-CC-------
Confidence 44555555665 4455544 88888633333333333333444555 3 5567778889999999988 65
Q ss_pred cccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 299 ILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 299 ~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
...........+..+...+++. +++++.++.+..++.. +.. ...+......
T Consensus 128 -------~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~-------------------~~~~~~~~~~ 178 (330)
T 3hxj_A 128 -------EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--GTE-------------------KWRFKTNDAI 178 (330)
T ss_dssp -------EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--SCE-------------------EEEEECSSCC
T ss_pred -------EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCE-------------------eEEEecCCCc
Confidence 1111122233445566665554 6666666888888764 221 1222223445
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 379 ITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
+.++.+..++ .+ ..++ +.|..|| .+++.+..+..... .+.++.+. ++|...+. . .++.|..||. ++
T Consensus 179 ~~~~~~d~~g-~l-~v~t--~~l~~~d-~~g~~~~~~~~~~~-~~~~~~~~----~~g~l~v~-t-~~~gl~~~~~-~g- 244 (330)
T 3hxj_A 179 TSAASIGKDG-TI-YFGS--DKVYAIN-PDGTEKWNFYAGYW-TVTRPAIS----EDGTIYVT-S-LDGHLYAINP-DG- 244 (330)
T ss_dssp CSCCEECTTC-CE-EEES--SSEEEEC-TTSCEEEEECCSSC-CCSCCEEC----TTSCEEEE-E-TTTEEEEECT-TS-
T ss_pred eeeeEEcCCC-EE-EEEe--CEEEEEC-CCCcEEEEEccCCc-ceeceEEC----CCCeEEEE-c-CCCeEEEECC-CC-
Confidence 6677777776 44 4444 7899999 78888877776554 78899987 77765553 4 6788888874 34
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEc
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHM 517 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl 517 (1395)
..+..+........ .+.+..+|.+ ..++.++.|+.+|.
T Consensus 245 -----------~~~~~~~~~~~~~~---------~~~~~~~g~l-~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 245 -----------TEKWRFKTGKRIES---------SPVIGNTDTI-YFGSYDGHLYAINP 282 (330)
T ss_dssp -----------CEEEEEECSSCCCS---------CCEECTTSCE-EEECTTCEEEEECT
T ss_pred -----------CEeEEeeCCCCccc---------cceEcCCCeE-EEecCCCCEEEECC
Confidence 44444443322211 2444556654 45667888998884
No 242
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.17 E-value=0.0013 Score=78.34 Aligned_cols=239 Identities=8% Similarity=-0.038 Sum_probs=143.4
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCccc
Q 039790 220 LGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQI 299 (1395)
Q Consensus 220 ~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~ 299 (1395)
.|.+..+ ..+|+.+.. ..|+.+++.++....+......+..++|...++.++++-...+.|+.|++..+.
T Consensus 80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------- 149 (386)
T 3v65_B 80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------- 149 (386)
T ss_dssp CEEECSS-CCEEEEECB-SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--------
T ss_pred eECCccc-cceeEeecC-ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--------
Confidence 3444444 345555443 578889988776554444455688999943455566666677889999988654
Q ss_pred ccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 300 LGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 300 ~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
...+..........+++++.++.++.+... +.|.+++...... ...+...-..
T Consensus 150 ------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--------------------~~l~~~~l~~ 203 (386)
T 3v65_B 150 ------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--------------------KVLLWQSLEK 203 (386)
T ss_dssp ------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--------------------EEEECSSCSC
T ss_pred ------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--------------------EEeecCCCCC
Confidence 112222223344568888877777776654 3444443321100 1222333356
Q ss_pred eEEEEEecCCCcEEEEEeCC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 379 ITELSMCQWLTTRLASASLD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
...|++.|.++.++++-... +.|..++.........+...-. ....|+|+ +++..|..+-...+.|..+|+...
T Consensus 204 P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~-~PnGlavd----~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 204 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF-WPNGLTID----YAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS-CEEEEEEE----GGGTEEEEEETTTTEEEEECTTSC
T ss_pred CcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC-CeeeEEEe----CCCCEEEEEECCCCEEEEEeCCCC
Confidence 78999998775566665555 7888888764433333332222 68999998 877777776767889999998643
Q ss_pred CCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 458 EGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 458 ~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+...... -..+++ ..+.++++....+.|+.++..+|.
T Consensus 279 ------------~~~~~~~~~~~~---------P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 279 ------------HRKAVISQGLPH---------PFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp ------------SCEEEECSSCSS---------EEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred ------------eeEEEEECCCCC---------ceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 111112211111 113566 456677777778888888855554
No 243
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.13 E-value=0.0021 Score=75.40 Aligned_cols=241 Identities=7% Similarity=-0.036 Sum_probs=145.1
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCc
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKP 297 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~ 297 (1395)
...|.+..++ .+|+.+.. ..|+.+++.+.....+......+..|+|...++.++++-...+.|+.|++..+..
T Consensus 35 ~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----- 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----- 107 (349)
T ss_dssp SSCEEESSSC-CEEEEECB-SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----
T ss_pred CCcccccccC-ceeEeecc-cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-----
Confidence 3345555553 35555433 5688888887655444444456889999334555556656678899999886541
Q ss_pred ccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 298 QILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 298 ~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
..+..........+++.+.++.++.+... +.|.+++...... ...+...-
T Consensus 108 ---------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--------------------~~l~~~~l 158 (349)
T 3v64_C 108 ---------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--------------------KVLLWQSL 158 (349)
T ss_dssp ---------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECTTC
T ss_pred ---------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--------------------EEEEeCCC
Confidence 11222222344578888877777777654 5566665432111 12222334
Q ss_pred CCeEEEEEecCCCcEEEEEeCC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 377 GEITELSMCQWLTTRLASASLD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.....+++.|.++.++++-... +.|..+++.. .....+....-.....|+|+ +++..|..+-...+.|..+|+.
T Consensus 159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d----~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTID----YAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEEEEE----TTTTEEEEEETTTTEEEEEETT
T ss_pred CCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceEEEe----CCCCEEEEEECCCCEEEEEeCC
Confidence 5678999999765666665555 7888888754 33334422222268999999 8777777767678899999986
Q ss_pred CCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 456 EEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 456 tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.. .....+...... -..+++ ..+.++++....+.|+.++..+|.
T Consensus 234 G~------------~~~~~~~~~~~~---------P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 234 GS------------HRKAVISQGLPH---------PFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SC------------SCEEEECSSCSS---------EEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CC------------ceEEEEeCCCCC---------ceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 43 111112111111 113555 356777777778888888755554
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.13 E-value=0.0048 Score=80.58 Aligned_cols=322 Identities=9% Similarity=0.009 Sum_probs=178.3
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc--------CCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG--------HTQRVTDMAFFAEDVHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~--------H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl 287 (1395)
...|.++....+|.+. .|+.++.|.+||..++....+.. ....|.++.. ..+|.+.+ |+.+ -|.+||.
T Consensus 214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAM-DSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEE-CTTSCEEE-EESS-CEEEEET
T ss_pred CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEE-cCCCCEEE-EeCC-hhheEcC
Confidence 4568888887777644 45555458899988875544432 1356999988 66776544 4455 5899998
Q ss_pred CCCCCCCCCcccccceEEEEEEec-------CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILA-------DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~-------~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.++.. ..+.. -....|.++....++. +.++..++++.+++..... ...+....
T Consensus 290 ~~~~~--------------~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~---- 349 (795)
T 4a2l_A 290 GTDSF--------------ASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR-FKNIRNIP---- 349 (795)
T ss_dssp TTTEE--------------EEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS-SEEECCCT----
T ss_pred CCCeE--------------EEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc-ceEEcCCC----
Confidence 76541 11111 1234577788777764 6667777888888753211 00000000
Q ss_pred CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC-------CCCCeeEEEEeecCC
Q 039790 361 PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY-------DGHPVNCVTFLIGPH 433 (1395)
Q Consensus 361 ~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h-------~~~~V~sV~fs~~~~ 433 (1395)
.. -.-....|.++....+| .|..|+.++-|..||..++......... ....|.+++..
T Consensus 350 ----~~-----~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d---- 414 (795)
T 4a2l_A 350 ----YK-----NSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD---- 414 (795)
T ss_dssp ----TS-----SSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE----
T ss_pred ----CC-----CCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc----
Confidence 00 00124569999988876 4556778878999998877644332111 12379999997
Q ss_pred CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEE
Q 039790 434 PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIY 513 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~ 513 (1395)
.+|..|..+. .++-|.+||..++ +.. .+....... . ...+..+....+|.+.++.. +.|+
T Consensus 415 ~~g~~lWigt-~~~Gl~~~d~~~~------------~~~-~~~~~~~~l---~-~~~v~~i~~d~~g~lwigt~--~Gl~ 474 (795)
T 4a2l_A 415 EKKSLVYIGT-HAGGLSILHRNSG------------QVE-NFNQRNSQL---V-NENVYAILPDGEGNLWLGTL--SALV 474 (795)
T ss_dssp TTTTEEEEEE-TTTEEEEEETTTC------------CEE-EECTTTSCC---S-CSCEEEEEECSSSCEEEEES--SCEE
T ss_pred CCCCEEEEEe-CcCceeEEeCCCC------------cEE-EeecCCCCc---C-CCeeEEEEECCCCCEEEEec--Ccee
Confidence 7887344434 6677999998876 322 232111000 0 11223566777888776654 4588
Q ss_pred EEEcCCCCCCCCcceeeeeee----e-ccccEEEEecCCCC--cCcCCCCeEEEEEcCCCceeeec---------ccceE
Q 039790 514 AIHMDYGPNPASTRMDYIAEF----T-VTMPILSLTGTTTD--ASPDGEHIVQIYCVQTQAIQQYA---------LDLSQ 577 (1395)
Q Consensus 514 iWdl~~g~~~~~~~~~~i~~f----~-~~~~ils~~~~~~d--~~~s~dg~V~lWdv~t~~i~~~~---------~~~~~ 577 (1395)
+|+..++. +..+... . ....+.++...... .++.. +-|..|+..++.+ .+. .....
T Consensus 475 ~~~~~~~~------~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~ 546 (795)
T 4a2l_A 475 RFNPEQRS------FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTN 546 (795)
T ss_dssp EEETTTTE------EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEE
T ss_pred EEeCCCCe------EEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeE
Confidence 89876542 1111100 0 01223333222201 11222 4578888877765 321 12355
Q ss_pred EecCCCCCeecccCCCceEEEeecCCCC
Q 039790 578 CLPPPLENAELEKTDSNATRAFDVANPD 605 (1395)
Q Consensus 578 cl~~s~d~l~~~~sd~~v~~iWD~~tg~ 605 (1395)
|+....++..+-++..++. .||..++.
T Consensus 547 ~i~~d~~g~lWigT~~Gl~-~~d~~~~~ 573 (795)
T 4a2l_A 547 CIYEASNGIIWVGTREGFY-CFNEKDKQ 573 (795)
T ss_dssp EEEECTTSCEEEEESSCEE-EEETTTTE
T ss_pred EEEECCCCCEEEEeCCCce-eECCCCCc
Confidence 6666665533323233554 57776553
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.08 E-value=0.0038 Score=81.57 Aligned_cols=325 Identities=8% Similarity=0.048 Sum_probs=175.8
Q ss_pred EEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 219 VLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
|.++....+|.+.+ |+.++.|..||..++....+. .+...|.+|.. ..++.+.+ |+.++-|++||..++..
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~-d~~g~lwi-gt~~~Gl~~~~~~~~~~---- 247 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQ-QSPTRIWV-ATEGAGLFLINPKTKEI---- 247 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEE-EETTEEEE-EEBSSCEEEEETTTTEE----
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEE-cCCCCEEE-EECCCCeEEEeCCCCeE----
Confidence 78888888886544 666556889998877544332 23567888887 55665544 55444589999876541
Q ss_pred cccccceEEEEEEecC-------CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 297 PQILGKIVVAIQILAD-------GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 297 ~~~~~~~i~~l~~~~~-------~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
..+... ....|.++....++. +.++.. +++.+++.... ....+..... .
T Consensus 248 ----------~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~-~~~~~~~~~~---------~-- 303 (795)
T 4a2l_A 248 ----------KNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTF-NDLNIYHEGTD-SFASYSSNPV---------E-- 303 (795)
T ss_dssp ----------EEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEES-SCEEEEETTTT-EEEEECCCTT---------S--
T ss_pred ----------EEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeC-ChhheEcCCCC-eEEEEecCCC---------C--
Confidence 111111 134577777777665 444444 47888875321 1100000000 0
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC------CCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP------YDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~------h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...-....|.++....+| .|..|+.++-|.+||...+.. ..+.. -....|.++... .+|...+. .
T Consensus 304 -~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d----~~g~lWiG-t 374 (795)
T 4a2l_A 304 -NGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVED----KDKNLWIG-T 374 (795)
T ss_dssp -TTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEEC----TTSCEEEE-E
T ss_pred -CCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEEC----CCCCEEEE-E
Confidence 000134579999998887 456677778899998765543 22221 012369999987 77775553 3
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc-cccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL-RLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~-~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
.++-|..||..++ ... .+........ ... .-.+..++...+|.+|..|+.++.|+.|+..++..
T Consensus 375 -~~~Gl~~~~~~~~------------~~~-~~~~~~~~~~~~l~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 375 -NDGGLNLYNPITQ------------RFT-SYTLQEDESARGIG-SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp -SSSCEEEECTTTC------------CEE-EECCC------CCS-CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred -CCCCeEEEcCCCC------------cEE-EEecCCCCcccCCC-CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 6767999998765 332 2221110000 000 01223567778888455667777799999876531
Q ss_pred CCCcceeeeee---eeccccEEEEecCCCC--cCcCCCCeEEEEEcCCCceeeecc---------cceEEecCCCCCeec
Q 039790 523 PASTRMDYIAE---FTVTMPILSLTGTTTD--ASPDGEHIVQIYCVQTQAIQQYAL---------DLSQCLPPPLENAEL 588 (1395)
Q Consensus 523 ~~~~~~~~i~~---f~~~~~ils~~~~~~d--~~~s~dg~V~lWdv~t~~i~~~~~---------~~~~cl~~s~d~l~~ 588 (1395)
..+.. ......+.++...... .++.. +.|.+|+..++.+..+.. ....|+....++..+
T Consensus 440 ------~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 512 (795)
T 4a2l_A 440 ------ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW 512 (795)
T ss_dssp ------EEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred ------EEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE
Confidence 11110 0011223333322201 11222 348889988887655432 234566555555332
Q ss_pred ccCCCceEEEeecCCCCc
Q 039790 589 EKTDSNATRAFDVANPDG 606 (1395)
Q Consensus 589 ~~sd~~v~~iWD~~tg~~ 606 (1395)
-++..++. .||..++..
T Consensus 513 igt~~Gl~-~~~~~~~~~ 529 (795)
T 4a2l_A 513 IGGEEGLS-VFKQEGLDI 529 (795)
T ss_dssp EEESSCEE-EEEEETTEE
T ss_pred EEeCCceE-EEeCCCCeE
Confidence 22234544 567666543
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.03 E-value=0.0003 Score=90.14 Aligned_cols=105 Identities=16% Similarity=0.232 Sum_probs=69.0
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCCC-----------CCC------------------------eeEEEEeecCCCC
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPYD-----------GHP------------------------VNCVTFLIGPHPQ 435 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~-----------~~~------------------------V~sV~fs~~~~pd 435 (1395)
+|+.++.+|.++++|..+|+.+..+.... +.+ -..++|+ |+
T Consensus 316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~d----p~ 391 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN----PG 391 (668)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEE----TT
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceEC----CC
Confidence 68899999999999999999885443221 000 0125666 65
Q ss_pred CcEEEEE-----------------------------------ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc
Q 039790 436 HIVLITG-----------------------------------GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS 480 (1395)
Q Consensus 436 g~~L~s~-----------------------------------Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~ 480 (1395)
...+++. ...+|.|..||+.++ +.+-.+.....
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG------------~~~W~~~~~~~ 459 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ------------KAAWKVPYPTH 459 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT------------EEEEEEEESSS
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC------------cEEEEccCCCC
Confidence 5554431 113478999999888 66555544321
Q ss_pred ccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 481 AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 481 ~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.. ...+...|.+|+.++.|+.|++||..+|+
T Consensus 460 ~~----------~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 460 WN----------GGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CC----------CCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred Cc----------CceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 11 12334567788888999999999998875
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.03 E-value=0.00049 Score=76.55 Aligned_cols=192 Identities=15% Similarity=0.104 Sum_probs=119.0
Q ss_pred ceeeeeCCC-CCEEEEEEecCCCEEEEEEcCC--eEEEEECCCCceE-EeccCCCCeEE--EEEeeCCCCEEEEEECCCc
Q 039790 208 PITKYISDP-GLVLGRQIAVNRNYICYGLKLG--NIRILNIITALRS-LLRGHTQRVTD--MAFFAEDVHLLASASVDGR 281 (1395)
Q Consensus 208 ~i~~l~~h~-~~V~~va~Spdg~~LasGs~DG--~IrIWd~~~~~~~-~l~~H~~~V~s--laf~s~dg~~LaSgs~Dgt 281 (1395)
.+.+|.... ....++.|+ ++.++.+.+.+| .|+++|+.++++. .+. -....+. +++ . ++.+.+..-.++.
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~~~~FgeGit~-~-g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LGKRYFGEGISD-W-KDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CCTTCCEEEEEE-E-TTEEEEEESSSSE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cCCccceeEEEE-e-CCEEEEEEeeCCE
Confidence 344553222 335788898 777666777766 8999999998533 332 2234433 555 2 3344444456889
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
+.+||..+.+ .+..+..- . .-..++ +++..++++..++.+..+|.......
T Consensus 109 v~v~D~~t~~-----------~~~ti~~~--~--eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~------------ 159 (262)
T 3nol_A 109 GFVWNIRNLR-----------QVRSFNYD--G--EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPV------------ 159 (262)
T ss_dssp EEEEETTTCC-----------EEEEEECS--S--CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEE------------
T ss_pred EEEEECccCc-----------EEEEEECC--C--CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEE------------
Confidence 9999999887 22233221 1 112344 46777777766777877776543211
Q ss_pred ccccccceEE-EcccC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC-----------CCCCeeEEEE
Q 039790 362 VDELINGVQL-VGKHD-GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY-----------DGHPVNCVTF 428 (1395)
Q Consensus 362 ~~~~~~~~~~-l~~h~-~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h-----------~~~~V~sV~f 428 (1395)
..+.+ ..+.. ..++.+.|. +| .+++..-.+..|.+.|..+|+.+.++... .....+.|+|
T Consensus 160 -----~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~ 232 (262)
T 3nol_A 160 -----RTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAW 232 (262)
T ss_dssp -----EEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEE
T ss_pred -----EEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEE
Confidence 00111 11112 345677876 56 66666667889999999999999888642 1125689999
Q ss_pred eecCCCCCcEEEEEe
Q 039790 429 LIGPHPQHIVLITGG 443 (1395)
Q Consensus 429 s~~~~pdg~~L~s~G 443 (1395)
+ |+++.|+++|
T Consensus 233 d----p~~~~lfVTG 243 (262)
T 3nol_A 233 D----KEHHRLFVTG 243 (262)
T ss_dssp E----TTTTEEEEEE
T ss_pred c----CCCCEEEEEC
Confidence 9 8888888878
No 248
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.95 E-value=0.011 Score=68.14 Aligned_cols=235 Identities=9% Similarity=-0.044 Sum_probs=137.2
Q ss_pred EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
+|+.+.. ..|+..|+.+.....+.........++| .+ ++.++++-..++.|+.+++.... .+... ..
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~g~~~-d~~~~~ly~~D~~~~~I~~~~~~g~~--------~~~~~--~~ 70 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDT-EVASNRIYWSDLSQRMICSTQLDRAH--------GVSSY--DT 70 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEE-ETTTTEEEEEETTTTEEEEEEC----------------C--EE
T ss_pred EEEEECC-CeEEEEECCCcceEehhcCCCceEEEEE-EeCCCEEEEEECCCCcEEEEECCCCC--------CCccc--EE
Confidence 4455444 5689999988754444444567889999 55 45556666667899999987521 00000 11
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
+....-.....+++++.++.++.+.. .+.|.+++...... ...+.........+++.|.
T Consensus 71 ~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~--------------------~~~~~~~~~~P~~iavdp~ 130 (316)
T 1ijq_A 71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--------------------KTLFRENGSKPRAIVVDPV 130 (316)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--------------------EEEEECTTCCEEEEEEETT
T ss_pred EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce--------------------EEEEECCCCCcceEEeCCC
Confidence 12222234467888877777776654 45666665432110 1122223356789999987
Q ss_pred CCcEEEEEeCC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 388 LTTRLASASLD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
++.++++.... +.|..+++. |.....+....-.....|+|+ +++..|..+....+.|..+|+...
T Consensus 131 ~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d----~~~~~lY~~D~~~~~I~~~d~dg~--------- 196 (316)
T 1ijq_A 131 HGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLD----LLSGRLYWVDSKLHSISSIDVNGG--------- 196 (316)
T ss_dssp TTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC---------
T ss_pred CCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEe----ccCCEEEEEECCCCeEEEEecCCC---------
Confidence 74555554443 688888875 444444422222278999999 888777776767889999998643
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. .+.+....... . ....+++. .+.++++....+.|+.++..+|+
T Consensus 197 ---~-~~~~~~~~~~~-----~-~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 197 ---N-RKTILEDEKRL-----A-HPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ---S-CEEEEECTTTT-----S-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred ---c-eEEEeecCCcc-----C-CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 1 22221111000 0 01135554 46777777788889998876654
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.94 E-value=0.00057 Score=87.51 Aligned_cols=207 Identities=11% Similarity=0.028 Sum_probs=107.6
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-EeccCCC----------Ce-EEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLRGHTQ----------RV-TDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~----------~V-~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
+..|++++.++.|+-+|..+|+.. .+..... .+ ..+++ .+..|+.++.||.|+.+|..+|+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~-- 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAI-- 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEE--
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEe--
Confidence 456777778889999999888532 3322111 01 22344 3567888889999999999999821
Q ss_pred CcccccceEEEEEEecCC-CCCcc-EEEEeCCCCeEEEEEe------CCeEEEEEcCCCCccccccC--CCCCc-c----
Q 039790 296 KPQILGKIVVAIQILADG-DSVHP-RVCWHPHKQEILMLAI------GNRILKIDSNRVGKGERFSA--EEPLK-C---- 360 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~-~~~v~-~v~~sp~~~~lla~g~------~~~ii~~d~~~~~~~~~~s~--~~~~~-~---- 360 (1395)
......... ...+. .-.+ .++.++++.. ++.++.+|.......-.+.. ..+.. .
T Consensus 141 ---------W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~ 209 (668)
T 1kv9_A 141 ---------WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPE 209 (668)
T ss_dssp ---------EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred ---------eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccc
Confidence 111111000 00010 0011 1334444433 25566666533221100100 00000 0
Q ss_pred -----CccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC-------------------cEEEEeCCCCceeEEec
Q 039790 361 -----PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG-------------------TVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 361 -----~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg-------------------~IrIWDl~sg~~l~tl~ 416 (1395)
..|.- .....+.++......+++.+++ .+++.++.++ .|..+|..+|+.+..+.
T Consensus 210 ~~~~~~~~~g-~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 210 LREAAKTWQG-DQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp HHHHHTTCCS-SCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccCCc-cceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 00000 0000001122223457888877 6777777665 39999999999998886
Q ss_pred C--CCC------CCeeEEEEeecCCCCCc---EEEEEecCCCeEEEEECCCC
Q 039790 417 P--YDG------HPVNCVTFLIGPHPQHI---VLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 417 ~--h~~------~~V~sV~fs~~~~pdg~---~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
. |.. .++....+. .+|+ .|+. ++.+|.|+++|..+|
T Consensus 288 ~~~~~~wd~~~~~~~~~~d~~----~~G~~~~~v~~-~~~~G~l~~lD~~tG 334 (668)
T 1kv9_A 288 VTPGDSWDFTATQQITLAELN----IDGKPRKVLMQ-APKNGFFYVLDRTNG 334 (668)
T ss_dssp SSTTCCSCCCCCSCEEEEEEE----ETTEEEEEEEE-CCTTSEEEEEETTTC
T ss_pred cCCCccccccCCCCcEEEEec----cCCcEEEEEEE-ECCCCEEEEEECCCC
Confidence 4 321 122222332 3564 4555 559999999999998
No 250
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.91 E-value=0.0009 Score=79.90 Aligned_cols=203 Identities=12% Similarity=0.091 Sum_probs=117.5
Q ss_pred EEEEEEecCCCEEEEEEcC------CeEEEEECCCCc-eEEecc--CC-CCeEEEEEeeCCCCEEEEEE-----------
Q 039790 219 VLGRQIAVNRNYICYGLKL------GNIRILNIITAL-RSLLRG--HT-QRVTDMAFFAEDVHLLASAS----------- 277 (1395)
Q Consensus 219 V~~va~Spdg~~LasGs~D------G~IrIWd~~~~~-~~~l~~--H~-~~V~slaf~s~dg~~LaSgs----------- 277 (1395)
-..+.++|+| +++++..+ |.|.++|..+.. +..+.. +. ..-+++-| +++++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~-~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWW-NLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEE-ETTTTEEEECBCCCHHHHTTCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEE-CCCCCEEEEccCcCcccccccc
Confidence 3456788999 77776655 789999999875 444442 22 22446777 89999988885
Q ss_pred --------CCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEE--eCCCCeEEEEEe-----C-CeEEEE
Q 039790 278 --------VDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCW--HPHKQEILMLAI-----G-NRILKI 341 (1395)
Q Consensus 278 --------~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~--sp~~~~lla~g~-----~-~~ii~~ 341 (1395)
.+.+|.+||+.+++ .+..+.+ +........+.| +|++.+.++++. . +.+.+|
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k-----------~~~tI~v-g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~ 285 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRK-----------RIHSLTL-GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW 285 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTE-----------EEEEEES-CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred chhhhhhccCCEEEEEECCCCc-----------EeeEEec-CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence 36899999999765 2222221 111112223444 999998888875 4 456555
Q ss_pred EcCCCCccccccCCCCCccCccccccce----EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC---CceeEE
Q 039790 342 DSNRVGKGERFSAEEPLKCPVDELINGV----QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK---STPLAV 414 (1395)
Q Consensus 342 d~~~~~~~~~~s~~~~~~~~~~~~~~~~----~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s---g~~l~t 414 (1395)
+... +. |.....+..........+ .-+.+-......|.+|+||..+.++.-..+.|.+||+.. .+.+..
T Consensus 286 ~~d~-g~---~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~ 361 (462)
T 2ece_A 286 FYED-GK---WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGK 361 (462)
T ss_dssp EEET-TE---EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred EecC-Cc---eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEE
Confidence 4422 21 100000000000000000 000001245788999999944455555578999999863 345555
Q ss_pred ecCCC---------CC----CeeEEEEeecCCCCCcEEEEEe
Q 039790 415 LRPYD---------GH----PVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 415 l~~h~---------~~----~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+.... +. ....+.++ |||++|+++.
T Consensus 362 I~tGG~~~~~~~~~G~~~~ggPr~~~lS----pDGk~LyVaN 399 (462)
T 2ece_A 362 VKLGGIFHRADHPAGHKLTGAPQMLEIS----RDGRRVYVTN 399 (462)
T ss_dssp EECBTTTTCBCCTTSCCCCSCCCCEEEC----TTSSEEEEEC
T ss_pred EEeCCeeccccccccccCCCCCCEEEEc----CCCCEEEEEc
Confidence 54220 11 35889999 9999999854
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.89 E-value=0.003 Score=72.74 Aligned_cols=197 Identities=11% Similarity=0.029 Sum_probs=121.4
Q ss_pred CCEEEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEecc-----CCCCeEEEEEeeC-CCCEEEEEEC-----------
Q 039790 217 GLVLGRQIAV-NRNYICYGLKLGNIRILNIITALRSLLRG-----HTQRVTDMAFFAE-DVHLLASASV----------- 278 (1395)
Q Consensus 217 ~~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~-----H~~~V~slaf~s~-dg~~LaSgs~----------- 278 (1395)
..+.++++.+ +|+ |+.+...+.|.+||..++.+..+.. ......++++ .+ +|++.++-..
T Consensus 80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~-d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTV-DQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEE-CTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEE-ecCCCEEEEECCccccccccccee
Confidence 3578899998 555 5555555568889988765443322 1235788999 77 8887776532
Q ss_pred ------CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCcccc
Q 039790 279 ------DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGER 351 (1395)
Q Consensus 279 ------DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~ 351 (1395)
+|.|+.||..++.. ............++|++++..++++.. .+.|.++|......+
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~---------------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-- 220 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKET---------------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-- 220 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEE---------------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT--
T ss_pred hcccCCCceEEEEeCCCCEE---------------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC--
Confidence 36788888776540 111111123457999999987777754 478888886431100
Q ss_pred ccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeC----------CCcEEEEeCCCCceeEEecCCCC-
Q 039790 352 FSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASL----------DGTVKIWDDRKSTPLAVLRPYDG- 420 (1395)
Q Consensus 352 ~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~----------Dg~IrIWDl~sg~~l~tl~~h~~- 420 (1395)
....+....+ ...+++.++| +++++... .+.|..+|. .|+.+..+....+
T Consensus 221 ----------------~~~~~~~~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~ 281 (322)
T 2fp8_A 221 ----------------TAEVLVKIPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPF 281 (322)
T ss_dssp ----------------CEEEEEECSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTT
T ss_pred ----------------ccceEEeCCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCC
Confidence 0111111223 7789999998 66555544 467888886 5777777764432
Q ss_pred --CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 421 --HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 421 --~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
..++++++. ++..+++ +..++.|.++++...
T Consensus 282 ~~~~~~~~~~~-----~g~L~v~-~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 282 AGEHFEQIQEH-----DGLLYIG-TLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCCCEEEEE-----TTEEEEE-CSSCSEEEEEEC---
T ss_pred ccccceEEEEe-----CCEEEEe-ecCCCceEEEecccc
Confidence 257778774 5655554 447888999988643
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.85 E-value=0.002 Score=73.75 Aligned_cols=204 Identities=10% Similarity=-0.005 Sum_probs=115.6
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDG--RFFIWNITEGPDEE 294 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~~~ 294 (1395)
....+++|+++|+++++-..++.|..||..++....+ ........|+| .++++++++..... .|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~-~~~~~p~gia~-~~dG~l~vad~~~~~~~v~~~d~~~g~~-- 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA-TVEGKVSGLAF-TSNGDLVATGWNADSIPVVSLVKSDGTV-- 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-ECSSEEEEEEE-CTTSCEEEEEECTTSCEEEEEECTTSCE--
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEE-eCCCCceeEEE-cCCCcEEEEeccCCcceEEEEcCCCCeE--
Confidence 5678899999999777766889999999887643333 23456889999 88888766654432 466677776651
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
..+.... .......++..+ +..++++.. .+.+++++.... ....+.....+.. . ...
T Consensus 108 ----------~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~-~~~v~~~~~~~~~-----~----~~~ 165 (306)
T 2p4o_A 108 ----------ETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQP-SGSIWLEHPMLAR-----S----NSE 165 (306)
T ss_dssp ----------EEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTT-EEEEEEECGGGSC-----S----STT
T ss_pred ----------EEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCC-cEeEEEECCcccc-----c----ccc
Confidence 1111111 111222344333 334555553 677777775321 0000000000000 0 000
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cce--eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STP--LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELK 450 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~--l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~ 450 (1395)
..-...+.| ++++..++++-...++|..||+.. +.. ...+... . ....+++. ++|.++++.. .++.|.
T Consensus 166 ~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P~gi~vd----~dG~l~va~~-~~~~V~ 236 (306)
T 2p4o_A 166 SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFD----VEGNLYGATH-IYNSVV 236 (306)
T ss_dssp CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEB----TTCCEEEECB-TTCCEE
T ss_pred CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-C-CCCCeEEC----CCCCEEEEeC-CCCeEE
Confidence 111234455 777745666666788999999864 321 1222111 2 46778998 8997766543 678899
Q ss_pred EEECC
Q 039790 451 IWASA 455 (1395)
Q Consensus 451 IWDl~ 455 (1395)
+||..
T Consensus 237 ~~~~~ 241 (306)
T 2p4o_A 237 RIAPD 241 (306)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 99864
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.85 E-value=0.0021 Score=70.89 Aligned_cols=190 Identities=12% Similarity=0.058 Sum_probs=118.4
Q ss_pred cceeeeeCCC--CCEEEEEEecCCCEEEEEEcC--CeEEEEECCCCceEEeccCCCCeE--EEEEeeCCCCEEEEEECCC
Q 039790 207 TPITKYISDP--GLVLGRQIAVNRNYICYGLKL--GNIRILNIITALRSLLRGHTQRVT--DMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 207 ~~i~~l~~h~--~~V~~va~Spdg~~LasGs~D--G~IrIWd~~~~~~~~l~~H~~~V~--slaf~s~dg~~LaSgs~Dg 280 (1395)
+.+..|. |. ....++.|+. +.+..+.+.+ ..|+++|+.++.+..-..-....+ .+++ .++.+.+..-.++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCC
Confidence 4455553 43 4566888886 5555555554 489999999986432222222333 3454 2345555566789
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCcc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC 360 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~ 360 (1395)
.+.+||..+.+ .+..+.. .. .-..++ .++..++++-.++.+..+|......
T Consensus 86 ~v~v~D~~tl~-----------~~~ti~~---~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~------------ 136 (243)
T 3mbr_X 86 EGFVYDLATLT-----------PRARFRY---PG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ------------ 136 (243)
T ss_dssp EEEEEETTTTE-----------EEEEEEC---SS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCE------------
T ss_pred EEEEEECCcCc-----------EEEEEeC---CC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeE------------
Confidence 99999999876 2222222 11 123444 4677788887778888887654321
Q ss_pred CccccccceEEEc--ccC---CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC------------CCCCe
Q 039790 361 PVDELINGVQLVG--KHD---GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY------------DGHPV 423 (1395)
Q Consensus 361 ~~~~~~~~~~~l~--~h~---~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h------------~~~~V 423 (1395)
...+. .+. ..++.+.|. +| .+++..-.+..|.+.|..+|+.+..+... .+.-.
T Consensus 137 --------~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 137 --------VGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp --------EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred --------EEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce
Confidence 11111 111 345677776 45 56666556889999999999999887622 22256
Q ss_pred eEEEEeecCCCCCcEEEEEe
Q 039790 424 NCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 424 ~sV~fs~~~~pdg~~L~s~G 443 (1395)
+.|+|+ |+++.|+++|
T Consensus 207 NGIA~d----~~~~~lfVTG 222 (243)
T 3mbr_X 207 NGIAFD----AEHDRLFVTG 222 (243)
T ss_dssp EEEEEE----TTTTEEEEEE
T ss_pred EEEEEc----CCCCEEEEEC
Confidence 899999 8888888778
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.79 E-value=0.0023 Score=71.76 Aligned_cols=205 Identities=8% Similarity=0.012 Sum_probs=124.7
Q ss_pred CeEEEEEeeCCCCEEEEEEC--CCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-
Q 039790 259 RVTDMAFFAEDVHLLASASV--DGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG- 335 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~--DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~- 335 (1395)
....|.| ++++.++++.+. ++.|+++|+.+++ .+..+.+ .. ......+.+. ++.++++...
T Consensus 22 f~~Gl~~-~~dg~Lyvstg~~~~s~v~~iD~~tg~-----------v~~~i~l-~~-~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 22 FTQGLVY-AENDTLFESTGLYGRSSVRQVALQTGK-----------VENIHKM-DD-SYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp CEEEEEE-CSTTEEEEEECSTTTCEEEEEETTTCC-----------EEEEEEC-CT-TCCEEEEEEE--TTEEEEEETTC
T ss_pred CcccEEE-eCCCeEEEECCCCCCCEEEEEECCCCC-----------EEEEEec-CC-CcceEEEEEe--CCEEEEEEecC
Confidence 3679999 777766666554 5799999999988 2222221 11 1111234444 5567777654
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL 415 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl 415 (1395)
+.+.++|...... +..+..-...- ..+++||..++ .+..+++|.++|..+.+.+.++
T Consensus 86 ~~v~viD~~t~~v--------------------~~~i~~g~~~g--~glt~Dg~~l~-vs~gs~~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 86 NIGFIYDRRTLSN--------------------IKNFTHQMKDG--WGLATDGKILY-GSDGTSILYEIDPHTFKLIKKH 142 (266)
T ss_dssp SEEEEEETTTTEE--------------------EEEEECCSSSC--CEEEECSSSEE-EECSSSEEEEECTTTCCEEEEE
T ss_pred CEEEEEECCCCcE--------------------EEEEECCCCCe--EEEEECCCEEE-EECCCCeEEEEECCCCcEEEEE
Confidence 5566666533211 22232111111 33556774444 4557889999999999888877
Q ss_pred cCCC-C---CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccc----ccccc
Q 039790 416 RPYD-G---HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAE----LRLED 487 (1395)
Q Consensus 416 ~~h~-~---~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i----~~~~~ 487 (1395)
.-.. + ..++.+.|. +|..++. ...++.|.+-|..++ +.+.++....-.. .....
T Consensus 143 ~Vg~~~~p~~~~nele~~-----dg~lyvn-~~~~~~V~vID~~tg------------~V~~~I~~~g~~~~~~~~~~~~ 204 (266)
T 2iwa_A 143 NVKYNGHRVIRLNELEYI-----NGEVWAN-IWQTDCIARISAKDG------------TLLGWILLPNLRKKLIDEGFRD 204 (266)
T ss_dssp ECEETTEECCCEEEEEEE-----TTEEEEE-ETTSSEEEEEETTTC------------CEEEEEECHHHHHHHHHTTCTT
T ss_pred EECCCCcccccceeEEEE-----CCEEEEe-cCCCCeEEEEECCCC------------cEEEEEECCCcccccccccccc
Confidence 6321 1 136788885 6654444 436789999999998 8999888642100 00001
Q ss_pred cccceEEEEeCCCC-EEEEEeCCCeEEEEEcCCC
Q 039790 488 AFFNQVVALNRAGL-FLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 488 ~~~~~~l~~S~dg~-~LaSgs~Dg~I~iWdl~~g 520 (1395)
......++|++++. +++++...+.|++.++...
T Consensus 205 ~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 205 IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 11224699999875 6677778899999998653
No 255
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.79 E-value=0.00092 Score=86.81 Aligned_cols=198 Identities=10% Similarity=0.100 Sum_probs=110.6
Q ss_pred CEEEEEEe-cCCCEEEEEEc-CC----eEEEEECCCC-ceEEeccC-CCCeEEEEEeeCCCCEEEEEECC-----CcEEE
Q 039790 218 LVLGRQIA-VNRNYICYGLK-LG----NIRILNIITA-LRSLLRGH-TQRVTDMAFFAEDVHLLASASVD-----GRFFI 284 (1395)
Q Consensus 218 ~V~~va~S-pdg~~LasGs~-DG----~IrIWd~~~~-~~~~l~~H-~~~V~slaf~s~dg~~LaSgs~D-----gtV~I 284 (1395)
.+....|| |||++||++.. +| .|+++|+.++ ... ..+ .....+++| ++||+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l--~~~~~~~~~~~~W-spDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI--ADKVSGTNGEIVW-GPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC--CCCEEEECSCCEE-CSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC--CccccCceeeEEE-ecCCCEEEEEEECCCCCCCEEEE
Confidence 57788999 99999998754 23 4999999998 521 111 112346889 8999888877765 35888
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC---eEEEEEcCCCCccccccCCCCCccC
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN---RILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~---~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
|++.++... . .+.+..........+.|++++.+|+.....+ .+.+++.... .. ..
T Consensus 252 ~~lgt~~~~-------~----~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~-~~-------~~--- 309 (751)
T 2xe4_A 252 HVMGKLQSE-------D----VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG-NA-------HN--- 309 (751)
T ss_dssp EETTSCGGG-------C----EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC-TT-------CC---
T ss_pred EECCCCchh-------c----EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC-CC-------Cc---
Confidence 888765411 0 1111112223455789999999888777543 3444443221 00 00
Q ss_pred ccccccceEEE-cccCCCeEEEEEecCCCcEEEEEeCC----CcEEEEeCCCCceeEE-ecCCCC-CCeeEEEEeecCCC
Q 039790 362 VDELINGVQLV-GKHDGEITELSMCQWLTTRLASASLD----GTVKIWDDRKSTPLAV-LRPYDG-HPVNCVTFLIGPHP 434 (1395)
Q Consensus 362 ~~~~~~~~~~l-~~h~~~V~slafspdg~~~LaSgs~D----g~IrIWDl~sg~~l~t-l~~h~~-~~V~sV~fs~~~~p 434 (1395)
.+..+ ....+..+++.|+. |..+++....+ ..|..+|+.++..... +..|.. ..+..+.+
T Consensus 310 ------~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~------ 376 (751)
T 2xe4_A 310 ------TLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV------ 376 (751)
T ss_dssp ------CEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE------
T ss_pred ------eeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE------
Confidence 00112 22344556666654 43555555544 2567777765322222 333332 13445555
Q ss_pred CCcEEEEEecCCCeEEEEE
Q 039790 435 QHIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 435 dg~~L~s~Gs~Dg~I~IWD 453 (1395)
++.+|+.....|+..+||-
T Consensus 377 ~~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 377 RSNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CSSEEEEEEEETTEEEEEE
T ss_pred ECCEEEEEEEeCCEEEEEE
Confidence 3555655555788655543
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.78 E-value=0.00093 Score=85.37 Aligned_cols=70 Identities=6% Similarity=0.074 Sum_probs=49.2
Q ss_pred EEEEec-CCCEEEEEEcCC-----------eEEEEECCCCceE---Ee-ccCCCCeEEEEEeeCCCCEEEEEEC-CCcEE
Q 039790 221 GRQIAV-NRNYICYGLKLG-----------NIRILNIITALRS---LL-RGHTQRVTDMAFFAEDVHLLASASV-DGRFF 283 (1395)
Q Consensus 221 ~va~Sp-dg~~LasGs~DG-----------~IrIWd~~~~~~~---~l-~~H~~~V~slaf~s~dg~~LaSgs~-DgtV~ 283 (1395)
.+++.+ +|++++.|+.++ .+.+||..++... .+ ..+.....++++ ..++.+++.||. ++.++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~-~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM-DGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE-CTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccC-CCCCCEEEeCCCCCCceE
Confidence 456677 889999987643 5889999887422 22 223334445677 678999999984 45899
Q ss_pred EEECCCCC
Q 039790 284 IWNITEGP 291 (1395)
Q Consensus 284 IWdl~tg~ 291 (1395)
+||..++.
T Consensus 269 ~yd~~t~~ 276 (656)
T 1k3i_A 269 LYDSSSDS 276 (656)
T ss_dssp EEEGGGTE
T ss_pred EecCcCCc
Confidence 99998765
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.77 E-value=0.0029 Score=70.42 Aligned_cols=181 Identities=14% Similarity=0.097 Sum_probs=115.9
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEE--EEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTD--MAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~s--laf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
....++.|+ ++.+..+.+.+|.|+++|+.+++ +..+ -....+. +++ ..+.+.+..-.++.+.+||..+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~-- 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQ-- 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTE--
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCc--
Confidence 345678887 45666677788999999999985 2233 2233433 666 234555556678999999999876
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
.+..+... ..-..++ +++..++++..++.+..+|....... ..+. ..
T Consensus 128 ---------~~~ti~~~----~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~-----------------~~I~-V~ 174 (268)
T 3nok_A 128 ---------RERTTRYS----GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV-----------------GAVQ-VK 174 (268)
T ss_dssp ---------EEEEEECS----SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEE-----------------EEEE-CE
T ss_pred ---------EEEEEeCC----CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE-----------------EEEE-eC
Confidence 22233321 1123444 45677887776777888876443211 0011 11
Q ss_pred ccC---CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC------------CCCCeeEEEEeecCCCCCcE
Q 039790 374 KHD---GEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY------------DGHPVNCVTFLIGPHPQHIV 438 (1395)
Q Consensus 374 ~h~---~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h------------~~~~V~sV~fs~~~~pdg~~ 438 (1395)
.+. ..++.+.|. +| .+++....+..|.+.|..+|+.+.++... .+.-.+.|+|+ |+++.
T Consensus 175 ~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d----p~~~r 248 (268)
T 3nok_A 175 LRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVE----PGSGR 248 (268)
T ss_dssp ETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEEC----TTTCC
T ss_pred CCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEc----CCCCE
Confidence 121 245778887 56 66666667889999999999999887632 12256899999 88777
Q ss_pred EEEEe
Q 039790 439 LITGG 443 (1395)
Q Consensus 439 L~s~G 443 (1395)
|+++|
T Consensus 249 lfVTG 253 (268)
T 3nok_A 249 IFMTG 253 (268)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 77777
No 258
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.74 E-value=0.027 Score=67.20 Aligned_cols=237 Identities=8% Similarity=-0.050 Sum_probs=137.3
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE
Q 039790 229 NYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ 308 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~ 308 (1395)
.+|+... ...|+..++.......+......+..|+|...++.++++-...+.|+.+++....... . ...
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~-------~---~~~ 152 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-------S---YDT 152 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C-------C---CEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC-------c---ceE
Confidence 3555544 4789999998876555555567889999933455555555567889999987522000 0 012
Q ss_pred EecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC
Q 039790 309 ILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW 387 (1395)
Q Consensus 309 ~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd 387 (1395)
+..........+++...++.|+.+-.. +.|.+++...... ...+.........|++.|.
T Consensus 153 ~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~--------------------~~l~~~~~~~P~~iavdp~ 212 (400)
T 3p5b_L 153 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--------------------KTLFRENGSKPRAIVVDPV 212 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE--------------------EEEEECSSCCEEEEEEETT
T ss_pred EEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce--------------------EEEEeCCCCCcceEEEecc
Confidence 222233445578888877777776654 4454444321110 1222223445789999997
Q ss_pred CCcEEEEEeC-CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCc
Q 039790 388 LTTRLASASL-DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDI 466 (1395)
Q Consensus 388 g~~~LaSgs~-Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~ 466 (1395)
++.++++-.. .+.|...++........+...-. ....|+|+ +++..|..+-...+.|..+|+...
T Consensus 213 ~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~-~P~glavd----~~~~~lY~aD~~~~~I~~~d~dG~--------- 278 (400)
T 3p5b_L 213 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLD----LLSGRLYWVDSKLHSISSIDVNGG--------- 278 (400)
T ss_dssp TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS-CEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC---------
T ss_pred cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC-ceEEEEEE----eCCCEEEEEECCCCEEEEEeCCCC---------
Confidence 6455555433 37888888764433333333223 78999999 888888777767889999998643
Q ss_pred ccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 467 ESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 467 ~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+...... . ....+++ ..+.++++....+.|+.++..+|.
T Consensus 279 ---~~~~~~~~~~~l----~---~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 279 ---NRKTILEDEKRL----A---HPFSLAV-FEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp ---CCEEEEECSSTT----S---SEEEEEE-ETTEEEEEESSSCSEEEEESSSCC
T ss_pred ---ccEEEEeCCCCC----C---CCEEEEE-eCCEEEEecCCCCeEEEEEcCCCC
Confidence 221122211110 0 0113555 345566677777889888866664
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.71 E-value=0.015 Score=69.11 Aligned_cols=201 Identities=12% Similarity=0.005 Sum_probs=126.1
Q ss_pred CCCCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEe-ccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCC
Q 039790 215 DPGLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLL-RGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l-~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
....+.+++|.+.+..|+.. ...+.|+.|+..++....+ .........|++ .+ .+.++++-...+.|.++++....
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav-d~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV-DWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE-ETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE-EeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 34568899999866555544 5678999999988754333 323345677888 54 55566666667788888876432
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
...+..........++++|.++.++.+..+ ..|.+++...... .
T Consensus 193 --------------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------------------~ 238 (386)
T 3v65_B 193 --------------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--------------------R 238 (386)
T ss_dssp --------------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------------------E
T ss_pred --------------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc--------------------E
Confidence 011222233445688999988888877654 4666666532211 1
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
......-...+.|+|++++++++++-+..+.|..+|+........+..... ....|++. .+..+++ ...++.|
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~-----~~~ly~t-d~~~~~V 311 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-----EDSLYWT-DWHTKSI 311 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCS-SEEEEEEE-----TTEEEEE-ETTTTEE
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCC-CceEEEEE-----CCEEEEe-eCCCCeE
Confidence 222223345789999987756666666678899999865443333333333 67788885 3444444 4477888
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
..+|..++
T Consensus 312 ~~~~~~~G 319 (386)
T 3v65_B 312 NSANKFTG 319 (386)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 88886666
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.70 E-value=0.05 Score=62.48 Aligned_cols=199 Identities=13% Similarity=0.017 Sum_probs=123.0
Q ss_pred CCCEEEEEEecCCCEEEEE-EcCCeEEEEECCC----Cc-eEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECC
Q 039790 216 PGLVLGRQIAVNRNYICYG-LKLGNIRILNIIT----AL-RSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~----~~-~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~ 288 (1395)
.....+++|.+++..|+.. ..++.|+.++..+ .. ...+...-.....|++ .. +++++++-...+.|.++++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav-d~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV-DWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE-ETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE-eecCCeEEEEECCCCEEEEEeCC
Confidence 3567899999876655555 5568999999886 22 2233333345688998 54 55566666778899999987
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
... ...+..........++++|.++.++.+..+ +.|.+++......
T Consensus 108 g~~--------------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------------------ 155 (316)
T 1ijq_A 108 GVK--------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------------ 155 (316)
T ss_dssp SSS--------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------------
T ss_pred CCc--------------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------------------
Confidence 432 111122223445689999988888887764 4677776532110
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe-cC--CCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL-RP--YDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl-~~--h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.......-...+.|+|++++++++++-+..+.|..+|+... ....+ .. .-. ....|++. .+..+++ .
T Consensus 156 --~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~-~P~giav~-----~~~ly~~-d 225 (316)
T 1ijq_A 156 --YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLA-HPFSLAVF-----EDKVFWT-D 225 (316)
T ss_dssp --EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTS-SEEEEEEE-----TTEEEEE-E
T ss_pred --EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccC-CcEEEEEE-----CCEEEEE-E
Confidence 11122233567899999987556666666789999998743 33333 21 122 56788885 3444444 4
Q ss_pred cCCCeEEEEECCCC
Q 039790 444 PLNRELKIWASAEE 457 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg 457 (1395)
..++.|..+|..++
T Consensus 226 ~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 226 IINEAIFSANRLTG 239 (316)
T ss_dssp TTTTEEEEEETTTC
T ss_pred CCCCeEEEEeCCCC
Confidence 47788999987766
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.68 E-value=0.024 Score=66.18 Aligned_cols=199 Identities=12% Similarity=0.015 Sum_probs=125.6
Q ss_pred CCCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEe-ccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLL-RGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l-~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
...+.+++|.+.+..|... ...+.|+.|+..++....+ .........|++ .. ++.++++-...+.|.+.++....
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav-d~~~g~ly~~d~~~~~I~~~~~dG~~- 149 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV-DWVHDKLYWTDSGTSRIEVANLDGAH- 149 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE-ETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEE-ecCCCeEEEEcCCCCeEEEEcCCCCc-
Confidence 3557899999866655554 4678999999988754333 323345678898 54 55666666677899999987533
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
...+....-.....++++|.++.++.+..+ +.|.+++...... .
T Consensus 150 -------------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~---------------------~ 195 (349)
T 3v64_C 150 -------------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---------------------R 195 (349)
T ss_dssp -------------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---------------------E
T ss_pred -------------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc---------------------E
Confidence 011122223445689999988888877654 5677776532211 1
Q ss_pred EE-cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 371 LV-GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 371 ~l-~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
.+ ...-...+.|+|++++++++++-+..+.|..+|+........+..... ....|++. .+..+++ ...++.|
T Consensus 196 ~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~-----~~~ly~t-d~~~~~V 268 (349)
T 3v64_C 196 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-----EDSLYWT-DWHTKSI 268 (349)
T ss_dssp ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEE-----TTEEEEE-ETTTTEE
T ss_pred EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEEE-----CCEEEEe-cCCCCeE
Confidence 11 112345789999987756666666678899999865433333333333 67788885 3444444 4467888
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
..+|..++
T Consensus 269 ~~~~~~~G 276 (349)
T 3v64_C 269 NSANKFTG 276 (349)
T ss_dssp EEEETTTC
T ss_pred EEEEccCC
Confidence 88886555
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.67 E-value=0.0041 Score=69.08 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=117.6
Q ss_pred cCCCC--eEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEE
Q 039790 255 GHTQR--VTDMAFFAEDVHLLASASVDG--RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330 (1395)
Q Consensus 255 ~H~~~--V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ll 330 (1395)
.|... ...|.| . ++.++.+++.+| .|+++|+.+++ .+..+.+ ...........+++.++
T Consensus 38 phd~~~ftqGL~~-~-~~~LyestG~~g~S~v~~vD~~Tgk-----------v~~~~~l----~~~~FgeGit~~g~~ly 100 (262)
T 3nol_A 38 PHDTKAFTEGFFY-R-NGYFYESTGLNGRSSIRKVDIESGK-----------TLQQIEL----GKRYFGEGISDWKDKIV 100 (262)
T ss_dssp ECCTTCEEEEEEE-E-TTEEEEEEEETTEEEEEEECTTTCC-----------EEEEEEC----CTTCCEEEEEEETTEEE
T ss_pred cCCCCcccceEEE-E-CCEEEEECCCCCCceEEEEECCCCc-----------EEEEEec----CCccceeEEEEeCCEEE
Confidence 45443 578999 5 678888888877 89999999988 2222221 11222222333456677
Q ss_pred EEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 039790 331 MLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 331 a~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg 409 (1395)
.+.. ++.+.++|...... +..+.- ...-+.+ ++|+ ..|+.+..++.|.++|..+.
T Consensus 101 ~ltw~~~~v~v~D~~t~~~--------------------~~ti~~-~~eG~gl--t~dg-~~L~~SdGs~~i~~iDp~T~ 156 (262)
T 3nol_A 101 GLTWKNGLGFVWNIRNLRQ--------------------VRSFNY-DGEGWGL--THND-QYLIMSDGTPVLRFLDPESL 156 (262)
T ss_dssp EEESSSSEEEEEETTTCCE--------------------EEEEEC-SSCCCCE--EECS-SCEEECCSSSEEEEECTTTC
T ss_pred EEEeeCCEEEEEECccCcE--------------------EEEEEC-CCCceEE--ecCC-CEEEEECCCCeEEEEcCCCC
Confidence 6665 55566666543221 223321 1122233 3566 45555455788999999999
Q ss_pred ceeEEecCCC-C---CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc-
Q 039790 410 TPLAVLRPYD-G---HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR- 484 (1395)
Q Consensus 410 ~~l~tl~~h~-~---~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~- 484 (1395)
+.+.++.-.. + ..++.+.|. +|+..+. .-.++.|.+.|..++ +++.++....-....
T Consensus 157 ~v~~~I~V~~~g~~~~~lNELe~~-----~G~lyan-~w~~~~I~vIDp~tG------------~V~~~Id~~~L~~~~~ 218 (262)
T 3nol_A 157 TPVRTITVTAHGEELPELNELEWV-----DGEIFAN-VWQTNKIVRIDPETG------------KVTGIIDLNGILAEAG 218 (262)
T ss_dssp SEEEEEECEETTEECCCEEEEEEE-----TTEEEEE-ETTSSEEEEECTTTC------------BEEEEEECTTGGGGSC
T ss_pred eEEEEEEeccCCccccccceeEEE-----CCEEEEE-EccCCeEEEEECCCC------------cEEEEEECCcCccccc
Confidence 9888876421 1 135568885 6765544 436889999999999 999998875321100
Q ss_pred --ccccccceEEEEeCCCCEEEEEeC
Q 039790 485 --LEDAFFNQVVALNRAGLFLLANAK 508 (1395)
Q Consensus 485 --~~~~~~~~~l~~S~dg~~LaSgs~ 508 (1395)
.....+-..++|++++..|...++
T Consensus 219 ~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 219 PLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cccCcCCceEEEEEcCCCCEEEEECC
Confidence 011123357999998776555543
No 263
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.67 E-value=0.0045 Score=77.57 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=39.5
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceE-E--eccCC--CCeEE-EEEeeCCCCEEEEEEC------CCcEEEEECCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRS-L--LRGHT--QRVTD-MAFFAEDVHLLASASV------DGRFFIWNITEGP 291 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~-~--l~~H~--~~V~s-laf~s~dg~~LaSgs~------DgtV~IWdl~tg~ 291 (1395)
++..|+.++.|+.|..+|..+|.+. . +..+. ..+.+ ..+ .++ .++.++. +|.|+.+|..+|+
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence 3567888888999999999998533 2 22211 12221 112 144 4555544 7999999999998
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.65 E-value=0.044 Score=68.59 Aligned_cols=189 Identities=9% Similarity=-0.103 Sum_probs=98.8
Q ss_pred cEEEEeCCCCceeEEecC--CCC---CCeeEEEEeecCCCCCc--EEEEEecCCCeEEEEECCCCCCCCCCCCcccccEE
Q 039790 400 TVKIWDDRKSTPLAVLRP--YDG---HPVNCVTFLIGPHPQHI--VLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472 (1395)
Q Consensus 400 ~IrIWDl~sg~~l~tl~~--h~~---~~V~sV~fs~~~~pdg~--~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l 472 (1395)
.|..+|.++|+.+..+.. |.. ..+....+... ..+|+ .++..++.+|.|.++|..++ +.+
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~-~~~G~~~~~v~~~~~~G~l~~lD~~tG------------~~~ 339 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQ-PVNGKMTPLLSHIDRNGILYTLNRENG------------NLI 339 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE-EETTEEEEEEEEECTTSEEEEEETTTC------------CEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEec-ccCCcEEEEEEEeCCCcEEEEEECCCC------------CEE
Confidence 599999999999888763 221 01122222100 03674 33333558999999999998 555
Q ss_pred EEEeccCc-------------ccc---------------cc-cc-cccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 473 QTLELKSS-------------AEL---------------RL-ED-AFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 473 ~tl~~h~~-------------~i~---------------~~-~~-~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
..+..... .+. ++ .. ..--..+++++++.+|+....+....++.......
T Consensus 340 w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 419 (571)
T 2ad6_A 340 VAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYR 419 (571)
T ss_dssp EEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred eeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccc
Confidence 44443220 000 00 00 00002467888888888888877777665443111
Q ss_pred CCCcceeeeeeeeccccEEEEecCCCCcCcCCCCeEEEEEcCCCceee-ecccc-eEEecCC-CCC-eecccCCCceEEE
Q 039790 523 PASTRMDYIAEFTVTMPILSLTGTTTDASPDGEHIVQIYCVQTQAIQQ-YALDL-SQCLPPP-LEN-AELEKTDSNATRA 598 (1395)
Q Consensus 523 ~~~~~~~~i~~f~~~~~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~~-~~~~~-~~cl~~s-~d~-l~~~~sd~~v~~i 598 (1395)
... .|.+. .+.+...........++.|+.||+.++++.. +.... ....++. .++ +.++ +.++.++.
T Consensus 420 ~g~-------~~~g~--~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g-~~dg~l~a 489 (571)
T 2ad6_A 420 AGQ-------FFVGA--TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYA-TLDGYLKA 489 (571)
T ss_dssp TTS-------CCCCE--EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEE-CTTSEEEE
T ss_pred cCC-------ccccc--cceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEE-cCCCeEEE
Confidence 000 01110 0011111100011346889999999998743 21111 1111211 233 3443 45577789
Q ss_pred eecCCCCcceeec
Q 039790 599 FDVANPDGSASLE 611 (1395)
Q Consensus 599 WD~~tg~~~~~l~ 611 (1395)
||+.||+.+-.++
T Consensus 490 ~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 490 LDNKDGKELWNFK 502 (571)
T ss_dssp EETTTCCEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 9999999988877
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=0.03 Score=72.80 Aligned_cols=322 Identities=9% Similarity=0.022 Sum_probs=172.1
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec---------------cCCCCeEEEEEeeCCCCEEEEEECCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR---------------GHTQRVTDMAFFAEDVHLLASASVDG 280 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~---------------~H~~~V~slaf~s~dg~~LaSgs~Dg 280 (1395)
...|.++....+|. |..|+..+-|.+||..++....+. -....|.+|.. ..+|. |..|+.++
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~-D~~g~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ-DSFNN-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE-CSSCC-EEEEEBSS
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE-eCCCC-EEEEecCC
Confidence 35688888887776 555676566888998876433221 13457999988 66665 55677777
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEe-------cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCcccccc
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQIL-------ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFS 353 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~-------~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s 353 (1395)
-|..|+...+... .+... .-....|.+++...++ .+.++..++++.+++.... ....+.
T Consensus 334 Gl~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt~~~Gl~~~~~~~~-~~~~~~ 399 (781)
T 3v9f_A 334 GINFISNAPPTFH------------TWSYSPTQMNESSLSNKVVSSVCDDGQG-KLWIGTDGGGINVFENGKR-VAIYNK 399 (781)
T ss_dssp CEEEECSSCCSCE------------EEC----CCCSSCCSSSCEEEEEECTTS-CEEEEEBSSCEEEEETTEE-EEECC-
T ss_pred eEEEeCCCCCcce------------eeccCccccccCCCCCcceEEEEEcCCC-CEEEEeCCCcEEEEECCCC-eEEEcc
Confidence 8999998765410 11000 0123456677776665 4666666788888876321 100000
Q ss_pred CCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC--CCCCCeeEEEEeec
Q 039790 354 AEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP--YDGHPVNCVTFLIG 431 (1395)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~--h~~~~V~sV~fs~~ 431 (1395)
.........|.++....+| .|..|+.++-|..||..+++.. .+.. .....|.++...
T Consensus 400 ----------------~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d-- 458 (781)
T 3v9f_A 400 ----------------ENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYED-- 458 (781)
T ss_dssp --------------------CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEEC--
T ss_pred ----------------CCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEEC--
Confidence 0001234679999988776 3455777777999998777543 3321 122379999887
Q ss_pred CCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCe
Q 039790 432 PHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNA 511 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~ 511 (1395)
.+|...+. . . +-|.+||..++ +........... .....+..+....+|.+.++...+|
T Consensus 459 --~~g~lwig-t-~-~Gl~~~~~~~~------------~~~~~~~~~~~~----~~~~~i~~i~~d~~g~lWigt~~~G- 516 (781)
T 3v9f_A 459 --KNKKIWIG-T-H-AGVFVIDLASK------------KVIHHYDTSNSQ----LLENFVRSIAQDSEGRFWIGTFGGG- 516 (781)
T ss_dssp --TTSEEEEE-E-T-TEEEEEESSSS------------SCCEEECTTTSS----CSCSCEEEEEECTTCCEEEEESSSC-
T ss_pred --CCCCEEEE-E-C-CceEEEeCCCC------------eEEecccCcccc----cccceeEEEEEcCCCCEEEEEcCCC-
Confidence 77765553 4 4 56889998765 222211111000 0011233577788888776554344
Q ss_pred EEEEEcCCCCCCCCcceeeeeeee--ccccEEEEecCCCC--cCcCCCCeEEEEEcCCCceeeeccc------ceEEecC
Q 039790 512 IYAIHMDYGPNPASTRMDYIAEFT--VTMPILSLTGTTTD--ASPDGEHIVQIYCVQTQAIQQYALD------LSQCLPP 581 (1395)
Q Consensus 512 I~iWdl~~g~~~~~~~~~~i~~f~--~~~~ils~~~~~~d--~~~s~dg~V~lWdv~t~~i~~~~~~------~~~cl~~ 581 (1395)
|+.|+...+. +..+.... ....+.++...... .++...|.|..|+..++.+..+... ...++..
T Consensus 517 l~~~~~~~~~------~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~ 590 (781)
T 3v9f_A 517 VGIYTPDMQL------VRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISE 590 (781)
T ss_dssp EEEECTTCCE------EEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEE
T ss_pred EEEEeCCCCe------EEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEE
Confidence 7778765431 11111100 01223333222201 1123345447788887776554321 1223334
Q ss_pred CCCCeecccCCCceEEEeecCCC
Q 039790 582 PLENAELEKTDSNATRAFDVANP 604 (1395)
Q Consensus 582 s~d~l~~~~sd~~v~~iWD~~tg 604 (1395)
..++-.+-++..++. .||..++
T Consensus 591 d~~g~lW~~t~~Gl~-~~~~~~~ 612 (781)
T 3v9f_A 591 DKNGNIWASTNTGIS-CYITSKK 612 (781)
T ss_dssp CSSSCEEEECSSCEE-EEETTTT
T ss_pred CCCCCEEEEcCCceE-EEECCCC
Confidence 444433333355655 4565543
No 266
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.59 E-value=0.0029 Score=78.11 Aligned_cols=100 Identities=14% Similarity=0.057 Sum_probs=68.3
Q ss_pred cEEEEeCCC--Cce-eEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC----CCCCCCCcccccEE
Q 039790 400 TVKIWDDRK--STP-LAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE----GWLLPSDIESWKCT 472 (1395)
Q Consensus 400 ~IrIWDl~s--g~~-l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~----~~~~~~~~~~~~~l 472 (1395)
.|.|.|.++ ++. +..+..-. ...++.|+ |||+++++++..+.+|.++|+.+.+ +.+. .....+
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~s----PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~----~~~~v~ 324 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIAN--NPHGCNMA----PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD----PRSAVV 324 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEES--SCCCEEEC----TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC----GGGGEE
T ss_pred cEEEEeCcccCCceeEEEEecCC--CceEEEEc----CCCCEEEEeCCCCCeEEEEECcccccccccccC----cccceE
Confidence 478888887 555 55665332 57889999 9999999999899999999998641 0000 000122
Q ss_pred EEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 473 QTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 473 ~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
..+.... --..++|+++|...++.-.|+.|.+|++..
T Consensus 325 ~~v~vG~----------gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 325 AEPELGL----------GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECCBCCS----------CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEcCCCC----------CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 2222111 123589999996667788999999999976
No 267
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=0.035 Score=72.16 Aligned_cols=336 Identities=11% Similarity=0.013 Sum_probs=174.0
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc--------CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG--------HTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~--------H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
..|.++....+|.+.+ |+.+ .|.+||..++....+.. ....|.+|.. ..+|. |..|+..+-|.++|..
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~-d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQ-LKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEE-CTTSE-EEEEESSSCEEEEETT
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEE-CCCCC-EEEEeCCCCeEEECCC
Confidence 5688888888887554 4555 68899988775443321 2356999988 56665 5556665678999988
Q ss_pred CCCCCCCCcccccceEEEEEEe----cCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQIL----ADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~----~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
++....... .....+... .-....|.++....++ .+.++..++++.+++..... ...+.....
T Consensus 287 ~~~~~~~~~----~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~------- 353 (781)
T 3v9f_A 287 QNQFLLPEQ----IRFEFIREGDNNYSLSNASARYIFQDSFN-NIWIGTWGGGINFISNAPPT-FHTWSYSPT------- 353 (781)
T ss_dssp CC-------------CEEECBCSSTTSBSSSCEEEEEECSSC-CEEEEEBSSCEEEECSSCCS-CEEEC-----------
T ss_pred CCeeeeeec----cccccccCCCCCCCCCCCeEEEEEEeCCC-CEEEEecCCeEEEeCCCCCc-ceeeccCcc-------
Confidence 765211000 000000000 0123456677777766 46666668888888754311 000000000
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEe---cCCCCCCeeEEEEeecCCCCCcEEEE
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVL---RPYDGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl---~~h~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
... ...-....|.++....+| .|..|+.++-|.+||..++...... ..... .|.++... .+|.+.+.
T Consensus 354 -~~~--~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~d----~~g~lWig 423 (781)
T 3v9f_A 354 -QMN--ESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNKENRELLSN-SVLCSLKD----SEGNLWFG 423 (781)
T ss_dssp -CCC--SSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----CCCS-BEEEEEEC----TTSCEEEE
T ss_pred -ccc--cCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCc-ceEEEEEC----CCCCEEEE
Confidence 000 000123569999988876 4556676677999997655322111 11223 78999887 67776553
Q ss_pred EecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 442 GGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 442 ~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. .++-|..||..++ +. ..+... .. . ...+..+....+|.+.++. . +.|+.|+..++.
T Consensus 424 -t-~~~Gl~~~~~~~~------------~~-~~~~~~-~~----~-~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 424 -T-YLGNISYYNTRLK------------KF-QIIELE-KN----E-LLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKK 480 (781)
T ss_dssp -E-TTEEEEEECSSSC------------EE-EECCST-TT----C-CCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSS
T ss_pred -e-ccCCEEEEcCCCC------------cE-EEeccC-CC----C-CCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCe
Confidence 3 5677899988765 32 222211 00 0 1122346667778766654 3 568899977643
Q ss_pred CCCCcceeeeeee-eccccEEEEecCCCC--cCcCCCCeEEEEEcCCCceeeecc------cceEEecCCCCCeecccCC
Q 039790 522 NPASTRMDYIAEF-TVTMPILSLTGTTTD--ASPDGEHIVQIYCVQTQAIQQYAL------DLSQCLPPPLENAELEKTD 592 (1395)
Q Consensus 522 ~~~~~~~~~i~~f-~~~~~ils~~~~~~d--~~~s~dg~V~lWdv~t~~i~~~~~------~~~~cl~~s~d~l~~~~sd 592 (1395)
.. .+...... .....+.++...... .++..++-|..|+..++.+..+.. ....|+....++..+-++.
T Consensus 481 ~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~ 557 (781)
T 3v9f_A 481 VI---HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG 557 (781)
T ss_dssp CC---EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET
T ss_pred EE---ecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence 21 11000000 001223333222201 112222347778888877665532 2245666655553333334
Q ss_pred CceEEEeecCCCC
Q 039790 593 SNATRAFDVANPD 605 (1395)
Q Consensus 593 ~~v~~iWD~~tg~ 605 (1395)
.+++..||..++.
T Consensus 558 ~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 558 EGLVCFPSARNFD 570 (781)
T ss_dssp TEEEEESCTTTCC
T ss_pred CCceEEECCCCCc
Confidence 5664567776654
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.57 E-value=0.046 Score=65.11 Aligned_cols=202 Identities=13% Similarity=0.025 Sum_probs=124.3
Q ss_pred CCCCEEEEEEecCCCEEEEE-EcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 215 DPGLVLGRQIAVNRNYICYG-LKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
....+.+++|.+.+..|... ...+.|+.+++.+. ....+.........|++....++++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34678899999866666555 45688999998762 2333333445678899932356666666677889999987
Q ss_pred CCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccc
Q 039790 289 EGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELI 366 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~ 366 (1395)
... ...+..........|+++|.++.++.+..+ ..|.+++......
T Consensus 190 g~~--------------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------------------ 237 (400)
T 3p5b_L 190 GVK--------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------------ 237 (400)
T ss_dssp TCS--------------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------------------
T ss_pred CCc--------------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------------------
Confidence 543 111222233345689999988888877643 5666666532211
Q ss_pred cceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC--CCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 367 NGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP--YDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 367 ~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~--h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
...+...-...+.|+|++++++++++=...+.|..+|+........+.. .-. ....|++. .+..+++ ..
T Consensus 238 --~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~-~P~gl~v~-----~~~lywt-d~ 308 (400)
T 3p5b_L 238 --YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA-HPFSLAVF-----EDKVFWT-DI 308 (400)
T ss_dssp --EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTS-SEEEEEEE-----TTEEEEE-ES
T ss_pred --EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCC-CCEEEEEe-----CCEEEEe-cC
Confidence 1222223356889999988755555555678899999865433333332 222 45677774 3334444 44
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
..+.|..+|..++
T Consensus 309 ~~~~V~~~~~~~G 321 (400)
T 3p5b_L 309 INEAIFSANRLTG 321 (400)
T ss_dssp SSCSEEEEESSSC
T ss_pred CCCeEEEEEcCCC
Confidence 7788988887666
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.55 E-value=0.019 Score=69.31 Aligned_cols=250 Identities=9% Similarity=0.074 Sum_probs=140.8
Q ss_pred CCEEEEEEecC--CCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC---Cc-EEEEECCCC
Q 039790 217 GLVLGRQIAVN--RNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD---GR-FFIWNITEG 290 (1395)
Q Consensus 217 ~~V~~va~Spd--g~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D---gt-V~IWdl~tg 290 (1395)
....+++|+++ +..|..+...+.|+.+|..++.+..+........+|+| .++|+++++.... .. +..++...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giav-d~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNF-TLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEE-CTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEE-CCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 34568899984 44555554448999999988877777666667999999 8898855554321 12 333332211
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
. ... ..+. .......+++++.++.++++.. .+.+.+++... +.. ...+
T Consensus 218 ~--------~~~--~~~~----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~----------------~~~~ 266 (433)
T 4hw6_A 218 F--------TER--LSLC----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTL----------------TEEE 266 (433)
T ss_dssp T--------CCE--EEEE----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCE----------------EEEE
T ss_pred e--------ecc--cccc----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeE----------------EEEE
Confidence 1 000 1111 1223456888995556666554 45677776531 110 0001
Q ss_pred EEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--CCce--eEEecCC---CC-----------CCeeEEEE---
Q 039790 370 QLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR--KSTP--LAVLRPY---DG-----------HPVNCVTF--- 428 (1395)
Q Consensus 370 ~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~--sg~~--l~tl~~h---~~-----------~~V~sV~f--- 428 (1395)
.. .+....-..|+|+|++..++++-...+.|+.+|.. ++.. ...+.+. .+ .....++|
T Consensus 267 ~~-~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n 345 (433)
T 4hw6_A 267 VM-MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKN 345 (433)
T ss_dssp EE-CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEEC
T ss_pred ec-cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcc
Confidence 11 11122345799999993355565667889998865 3321 1222221 11 13567888
Q ss_pred ------eecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc-----cc---cccccc-ccceE
Q 039790 429 ------LIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS-----AE---LRLEDA-FFNQV 493 (1395)
Q Consensus 429 ------s~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~-----~i---~~~~~~-~~~~~ 493 (1395)
. .+|.++++ -..++.|+.++. ++ . +.++.+... .. ...... ..-..
T Consensus 346 ~~y~~dd----~~g~lyva-D~~n~~I~~~~~-~G------------~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~g 406 (433)
T 4hw6_A 346 EAYAGEE----DEYDFYFC-DRDSHTVRVLTP-EG------------R-VTTYAGRGNSREWGYVDGELRSQALFNHPTS 406 (433)
T ss_dssp GGGTTSS----CCEEEEEE-ETTTTEEEEECT-TS------------E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEE
T ss_pred ccccccC----CCCcEEEE-ECCCCEEEEECC-CC------------C-EEEEEeCCCCCccccCCCccccccEeCCCcE
Confidence 5 56665555 557889999984 33 2 333433221 00 000000 11346
Q ss_pred EEEe-CCCCEEEEEeCCCeEEEEEcC
Q 039790 494 VALN-RAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 494 l~~S-~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
++++ ++|.++++-..++.|+.++++
T Consensus 407 iavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 407 IAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8888 788888888888899888764
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=0.01 Score=71.53 Aligned_cols=252 Identities=9% Similarity=0.057 Sum_probs=138.7
Q ss_pred CEEEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEEC-CC----cEEEEECCCCC
Q 039790 218 LVLGRQIAV-NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASV-DG----RFFIWNITEGP 291 (1395)
Q Consensus 218 ~V~~va~Sp-dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~-Dg----tV~IWdl~tg~ 291 (1395)
...+++|+| ++..|..+...+.|+++|..++.+..+.........|+| .+++++|+.+.. ++ .+.+++ ..+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~-d~~G~~lyvad~~~~~~~~~v~~~~-~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICW-THEADSMIITNDQNNNDRPNNYILT-RESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEE-CTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEE-eCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence 456889998 455666665558899999998876666556667899999 888985555554 22 233344 3333
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
... ...+.. ......++++++++.++++.. .+.|.+++...... ..+.
T Consensus 216 ~~~---------~~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~------------------~~~~ 264 (430)
T 3tc9_A 216 FKV---------ITELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET------------------TPLF 264 (430)
T ss_dssp SCS---------EEEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE------------------EEEE
T ss_pred eee---------eeeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE------------------EEEE
Confidence 110 011211 223457889996556666654 56777777632110 0011
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC--Cce--eEEecCC---CC-----------CCee-EEEEeec
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK--STP--LAVLRPY---DG-----------HPVN-CVTFLIG 431 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s--g~~--l~tl~~h---~~-----------~~V~-sV~fs~~ 431 (1395)
.. +.......|+|+|+|..++++-...+.|..||... +.. +.++.+. .+ .... .++....
T Consensus 265 ~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~ 343 (430)
T 3tc9_A 265 TI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNP 343 (430)
T ss_dssp EC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECG
T ss_pred Ec-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccc
Confidence 11 12245788999999932556666778899987653 221 2233221 11 0122 3444200
Q ss_pred ----CCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC-----c---cccccccc-ccceEEEEeC
Q 039790 432 ----PHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS-----S---AELRLEDA-FFNQVVALNR 498 (1395)
Q Consensus 432 ----~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~-----~---~i~~~~~~-~~~~~l~~S~ 498 (1395)
..++|.++++ -..++.|+.++. .+ . +.++-+.. + ........ ..-..+++++
T Consensus 344 ~y~~~D~~g~lyva-D~~n~~I~~i~~-~G------------~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 408 (430)
T 3tc9_A 344 AYKGSSDEYDFYFC-DRENHCIRILTP-QG------------R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE 408 (430)
T ss_dssp GGTTSSCCEEEEEE-EGGGTEEEEECT-TS------------E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred cccccCCCCeEEEE-ECCCcEEEEECC-CC------------c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence 0023444443 446788888873 33 2 23333221 0 00000000 1234688888
Q ss_pred -CCCEEEEEeCCCeEEEEEcC
Q 039790 499 -AGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 499 -dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
+|.++++...++.|+.++++
T Consensus 409 ~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 409 ERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEccC
Confidence 68888888888889888764
No 271
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.50 E-value=0.052 Score=70.30 Aligned_cols=236 Identities=8% Similarity=-0.046 Sum_probs=137.3
Q ss_pred EEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEE
Q 039790 230 YICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQI 309 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~ 309 (1395)
+|+... ...|+..++.......+......+..|+|...++.++++-...+.|+.+++...... +. ...+
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-------~~---~~~v 465 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-------SS---YDTV 465 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEE
T ss_pred cccccc-ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-------cc---eeEE
Confidence 444443 456888888876555455556678899994345566666666788999998753200 00 1122
Q ss_pred ecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC
Q 039790 310 LADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL 388 (1395)
Q Consensus 310 ~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg 388 (1395)
+.........|++...++.|+.+-.. +.|.+++...... ..++.........|++.|.+
T Consensus 466 i~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~--------------------~~l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 466 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--------------------KTLFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--------------------EEEEECTTCCEEEEEEETTT
T ss_pred EecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE--------------------EEEEeCCCCCcceEEEecCC
Confidence 33233445678999888888877654 4555555432110 12222334568899999986
Q ss_pred CcEEEEEeCC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcc
Q 039790 389 TTRLASASLD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIE 467 (1395)
Q Consensus 389 ~~~LaSgs~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~ 467 (1395)
+.++++-..+ +.|...++........+...-. ....|++. +.+..|+.+-...+.|..+|+...
T Consensus 526 g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~-~P~GLavD----~~~~~LYwaD~~~~~I~~~d~dG~---------- 590 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLD----LLSGRLYWVDSKLHSISSIDVNGG---------- 590 (791)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCEEEEECSSCS-CEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC----------
T ss_pred CCEEEecCCCCCeEEEEecCCCceEEEEeCCCC-CceEEEEe----cCCCeEEEEeCCCCcEEEEecCCC----------
Confidence 4555554333 7788888764443333333323 78999998 777777776667788999998654
Q ss_pred cccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 468 SWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 468 ~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+....... .. ..+++. .+.++++....+.|+..+..+|.
T Consensus 591 --~~~~v~~~~~~l~----~P---~glav~-~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 591 --NRKTILEDEKRLA----HP---FSLAVF-EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp --SCEEEEECTTTTS----SE---EEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred --ceEEEecCCCccC----CC---CEEEEe-CCEEEEEECCCCEEEEEeCCCCc
Confidence 2222222211110 01 124443 34566666677888888876664
No 272
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.49 E-value=0.041 Score=63.45 Aligned_cols=230 Identities=8% Similarity=-0.036 Sum_probs=134.5
Q ss_pred EEEEEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEE
Q 039790 230 YICYGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAI 307 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l 307 (1395)
+|+.+. ...|+.+|+++.. ...+...-..+..|+|...++.++++-...+.|+.+++..+... ..
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------~~---- 72 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------QN---- 72 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--------CE----
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--------EE----
Confidence 344433 3679999998762 22222223457789994445666666667788999998765310 00
Q ss_pred EEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEec
Q 039790 308 QILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQ 386 (1395)
Q Consensus 308 ~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafsp 386 (1395)
+....-.....+++.+.++.++.+-. .+.|.+++...... ...+.........+++.|
T Consensus 73 -~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--------------------~~l~~~~~~~P~giavdp 131 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--------------------KVLFWQELDQPRAIALDP 131 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECSSCSSEEEEEEEG
T ss_pred -EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--------------------EEEEeCCCCCccEEEEeC
Confidence 11111223457888887777776654 35566665432111 122223445678999998
Q ss_pred CCCcEEEEEe-CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC
Q 039790 387 WLTTRLASAS-LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD 465 (1395)
Q Consensus 387 dg~~~LaSgs-~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~ 465 (1395)
.++.++++-. ..+.|..++... .....+....-.....|+|+ +++..|..+-...+.|..+|+...
T Consensus 132 ~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd----~~~~~lY~aD~~~~~I~~~d~dG~-------- 198 (318)
T 3sov_A 132 SSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLD----YEEQKLYWADAKLNFIHKSNLDGT-------- 198 (318)
T ss_dssp GGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC--------
T ss_pred CCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEe----ccCCEEEEEECCCCEEEEEcCCCC--------
Confidence 7644555442 357888888753 33333321211267999999 877777776767899999998643
Q ss_pred cccccEEEEEec-cCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 466 IESWKCTQTLEL-KSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 466 ~~~~~~l~tl~~-h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
. .+.+-. ..... ..+++. .+.++++....+.|+.++..+|.
T Consensus 199 ----~-~~~~~~~~~~~P---------~glav~-~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 199 ----N-RQAVVKGSLPHP---------FALTLF-EDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp ----S-CEEEECSCCSCE---------EEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred ----c-eEEEecCCCCCc---------eEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence 1 122211 11111 135554 34566667778889999987765
No 273
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.47 E-value=0.032 Score=70.03 Aligned_cols=58 Identities=19% Similarity=0.108 Sum_probs=36.8
Q ss_pred EEEEEcCCeEEEEECCCCceE-Ee--ccCC--CCeEE-EEEeeCCCCEEEEEE------CCCcEEEEECCCCC
Q 039790 231 ICYGLKLGNIRILNIITALRS-LL--RGHT--QRVTD-MAFFAEDVHLLASAS------VDGRFFIWNITEGP 291 (1395)
Q Consensus 231 LasGs~DG~IrIWd~~~~~~~-~l--~~H~--~~V~s-laf~s~dg~~LaSgs------~DgtV~IWdl~tg~ 291 (1395)
|+.++.|+.|.-+|..+|.+. .. ..+. ..+.+ -.+ .++ .++.++ .+|.|+.+|..+|+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v--~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKD-KVIIGSSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETT-EEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE--ECC-EEEEEecccccCCCCeEEEEECCCCc
Confidence 788888999999999998533 22 1111 12221 112 144 444444 38999999999998
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.46 E-value=0.078 Score=58.92 Aligned_cols=213 Identities=10% Similarity=0.078 Sum_probs=131.1
Q ss_pred eeCCCCCEEEEEEecCCCEEE-EEEcCCeEEEEECCCCceEEe--ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECC
Q 039790 212 YISDPGLVLGRQIAVNRNYIC-YGLKLGNIRILNIITALRSLL--RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNIT 288 (1395)
Q Consensus 212 l~~h~~~V~~va~Spdg~~La-sGs~DG~IrIWd~~~~~~~~l--~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~ 288 (1395)
+.+-.+.+.+++|.++++.|+ +...++.|..+|........+ .+ ....-.|++ ..++.++++.-.++.+.++++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g-~~D~EGIa~-~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDF-VKDLETIEY-IGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSS-CSSEEEEEE-CSTTEEEEEETTTTEEEEEEEC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCC-CCChHHeEE-eCCCEEEEEECCCCcEEEEEcC
Confidence 344446799999999766554 567789999999984434333 33 256888999 6778777776677899999987
Q ss_pred CCCCCCCCcccccceEEEEEEe---cCCCCCccEEEEeCCCCeEEEEEeCCe--EEEEEcCCCCccccccCCCCCccCcc
Q 039790 289 EGPDEEDKPQILGKIVVAIQIL---ADGDSVHPRVCWHPHKQEILMLAIGNR--ILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 289 tg~~~~~~~~~~~~~i~~l~~~---~~~~~~v~~v~~sp~~~~lla~g~~~~--ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
..... ..+....+- .........++|++.++.++++...+. ++.|+ ...... .+.....
T Consensus 100 ~~~~i--------~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~------~l~i~~~ 163 (255)
T 3qqz_A 100 PNSEV--------KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSN------ELHISKD 163 (255)
T ss_dssp TTCCE--------EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSS------CCEEEEC
T ss_pred CCCee--------eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCC------ceeeecc
Confidence 65410 011122211 122344568999999988888776554 44444 110000 0000000
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC--------CCeeEEEEeecCCCC
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG--------HPVNCVTFLIGPHPQ 435 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~--------~~V~sV~fs~~~~pd 435 (1395)
.... -..+-..+..++|+|..+++++....++.|.++|.. |+.+..+.-..+ ..--.|+|. ++
T Consensus 164 ~~~~----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d----~~ 234 (255)
T 3qqz_A 164 KALQ----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMD----AS 234 (255)
T ss_dssp HHHH----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEEC----TT
T ss_pred hhhc----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEEC----CC
Confidence 0000 001234578999999886788888888999999954 666665543321 145889998 89
Q ss_pred CcEEEEEecCCCeEEEEE
Q 039790 436 HIVLITGGPLNRELKIWA 453 (1395)
Q Consensus 436 g~~L~s~Gs~Dg~I~IWD 453 (1395)
|+..++ + .-+.++.+.
T Consensus 235 G~lyIv-s-E~n~~y~f~ 250 (255)
T 3qqz_A 235 GNIYIV-S-EPNRFYRFT 250 (255)
T ss_dssp CCEEEE-E-TTTEEEEEE
T ss_pred CCEEEE-c-CCceEEEEE
Confidence 986665 5 556555554
No 275
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.46 E-value=0.084 Score=66.26 Aligned_cols=208 Identities=7% Similarity=-0.122 Sum_probs=107.4
Q ss_pred EEEEecCCCcEEEEEeCC----------------CcEEEEeCCCCceeEEecCCCC-CC----eeE-EEEeecCCCCC--
Q 039790 381 ELSMCQWLTTRLASASLD----------------GTVKIWDDRKSTPLAVLRPYDG-HP----VNC-VTFLIGPHPQH-- 436 (1395)
Q Consensus 381 slafspdg~~~LaSgs~D----------------g~IrIWDl~sg~~l~tl~~h~~-~~----V~s-V~fs~~~~pdg-- 436 (1395)
.+++.+.. .++..++.+ +.|..+|..+|+.+..+..... .+ +.. +.+. ....+|
T Consensus 245 ~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d-~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSE-QKDKDGKA 322 (599)
T ss_dssp CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEE-EECTTSCE
T ss_pred ceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEe-ccccCCcE
Confidence 35566665 466666554 3799999999999887763211 01 111 1121 000256
Q ss_pred -cEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCc-------------ccc---------------c--c
Q 039790 437 -IVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS-------------AEL---------------R--L 485 (1395)
Q Consensus 437 -~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~-------------~i~---------------~--~ 485 (1395)
..++. ++.+|.|.++|..++ +.+..+..... .+. + .
T Consensus 323 ~~~v~~-~~~~G~l~~lD~~tG------------~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~ 389 (599)
T 1w6s_A 323 RKLLTH-PDRNGIVYTLDRTDG------------ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSA 389 (599)
T ss_dssp EEEEEE-ECTTSEEEEEETTTC------------CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCT
T ss_pred EEEEEE-ECCCcEEEEEECCCC------------CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCc
Confidence 34444 559999999999998 54444432210 000 0 0
Q ss_pred cccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCCCCcceeeeeeeeccccEEEEe-cCCCCcCcCCCCeEEEEEcC
Q 039790 486 EDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPILSLT-GTTTDASPDGEHIVQIYCVQ 564 (1395)
Q Consensus 486 ~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~~ils~~-~~~~d~~~s~dg~V~lWdv~ 564 (1395)
.-..-...++++++..+++....+....++-.......... |.+ .....+. ...........+.|..||+.
T Consensus 390 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~-------~~g-~~~~~~~~p~~~~~~~~~~G~l~A~D~~ 461 (599)
T 1w6s_A 390 MGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQF-------FVG-ATLNMYPGPKGDRQNYEGLGQIKAYNAI 461 (599)
T ss_dssp TCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC-------CCC-EEEEEEECTTSBTTTTBCCEEEEEECTT
T ss_pred ccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcc-------eec-ccceeccCCcCCcccCCCcCeEEEEECC
Confidence 00001125788999999888887766554433211000000 100 0000111 11101111256899999999
Q ss_pred CCceeeec-ccce-EEecC-CCCCeecccCCCceEEEeecCCCCcceeec
Q 039790 565 TQAIQQYA-LDLS-QCLPP-PLENAELEKTDSNATRAFDVANPDGSASLE 611 (1395)
Q Consensus 565 t~~i~~~~-~~~~-~cl~~-s~d~l~~~~sd~~v~~iWD~~tg~~~~~l~ 611 (1395)
++++..-. .... ..-++ ...++.+.++.++.++.||+.||+.+-.++
T Consensus 462 tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 462 TGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp TCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 99875321 1111 00111 123333334456788899999999887776
No 276
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.44 E-value=0.026 Score=62.13 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=116.7
Q ss_pred cCCC--CeEEEEEeeCCCCEEEEEECCC--cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEE
Q 039790 255 GHTQ--RVTDMAFFAEDVHLLASASVDG--RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330 (1395)
Q Consensus 255 ~H~~--~V~slaf~s~dg~~LaSgs~Dg--tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ll 330 (1395)
.|.. -+..|.| .. +.++.+.+.+| .|+++|+.+++ .+..+.+- ...........++.++
T Consensus 16 phd~~~ftqGL~~-~~-~~LyestG~~g~S~v~~vD~~tgk-----------v~~~~~l~----~~~fgeGi~~~~~~ly 78 (243)
T 3mbr_X 16 PHDTTAFTEGLFY-LR-GHLYESTGETGRSSVRKVDLETGR-----------ILQRAEVP----PPYFGAGIVAWRDRLI 78 (243)
T ss_dssp ECCTTCCEEEEEE-ET-TEEEEEECCTTSCEEEEEETTTCC-----------EEEEEECC----TTCCEEEEEEETTEEE
T ss_pred CCCCccccccEEE-EC-CEEEEECCCCCCceEEEEECCCCC-----------EEEEEeCC----CCcceeEEEEeCCEEE
Confidence 4543 4679999 44 66777777765 89999999988 22222111 1112222223355666
Q ss_pred EEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 039790 331 MLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 331 a~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg 409 (1395)
.... ++.+.++|...... +..+. ....-+.++ .++ ..|+.+..++.|.++|..+.
T Consensus 79 ~ltw~~~~v~v~D~~tl~~--------------------~~ti~-~~~~Gwglt--~dg-~~L~vSdgs~~l~~iDp~t~ 134 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATLTP--------------------RARFR-YPGEGWALT--SDD-SHLYMSDGTAVIRKLDPDTL 134 (243)
T ss_dssp EEESSSSEEEEEETTTTEE--------------------EEEEE-CSSCCCEEE--ECS-SCEEEECSSSEEEEECTTTC
T ss_pred EEEeeCCEEEEEECCcCcE--------------------EEEEe-CCCCceEEe--eCC-CEEEEECCCCeEEEEeCCCC
Confidence 6654 45556666533211 22332 122223444 566 44444456889999999999
Q ss_pred ceeEEecCCCC----CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCccccc-
Q 039790 410 TPLAVLRPYDG----HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELR- 484 (1395)
Q Consensus 410 ~~l~tl~~h~~----~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~- 484 (1395)
+.+.++.-... ..++.+.|. +|+.++.. -.+..|.+.|..++ +++..+....-....
T Consensus 135 ~~~~~I~V~~~g~~~~~lNeLe~~-----~G~lyanv-w~s~~I~vIDp~tG------------~V~~~idl~~l~~~~~ 196 (243)
T 3mbr_X 135 QQVGSIKVTAGGRPLDNLNELEWV-----NGELLANV-WLTSRIARIDPASG------------KVVAWIDLQALVPDAD 196 (243)
T ss_dssp CEEEEEECEETTEECCCEEEEEEE-----TTEEEEEE-TTTTEEEEECTTTC------------BEEEEEECGGGSTTTT
T ss_pred eEEEEEEEccCCcccccceeeEEe-----CCEEEEEE-CCCCeEEEEECCCC------------CEEEEEECCcCccccc
Confidence 98888764211 146778885 77755544 36789999999999 999998865321100
Q ss_pred ---ccccccceEEEEeCCCCEE-EEEeCCCeEE
Q 039790 485 ---LEDAFFNQVVALNRAGLFL-LANAKKNAIY 513 (1395)
Q Consensus 485 ---~~~~~~~~~l~~S~dg~~L-aSgs~Dg~I~ 513 (1395)
....-+-..+++++++..| ++|-.=..+|
T Consensus 197 ~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~ 229 (243)
T 3mbr_X 197 ALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLY 229 (243)
T ss_dssp SCCCTTSSCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred cccCCcCCceEEEEEcCCCCEEEEECCCCCcEE
Confidence 0111233478998876654 5544333333
No 277
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.44 E-value=0.0065 Score=67.55 Aligned_cols=190 Identities=7% Similarity=0.021 Sum_probs=115.2
Q ss_pred CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCe
Q 039790 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNR 337 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ 337 (1395)
-...|.| . ++.++++.+.+|.|+++|+.+++.. ..+ +.. .........+++.++.... ++.
T Consensus 56 ftqGL~~-~-~~~Ly~stG~~g~v~~iD~~Tgkv~-----------~~~--l~~---~~FgeGit~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 56 FTQGLVF-H-QGHFFESTGHQGTLRQLSLESAQPV-----------WME--RLG---NIFAEGLASDGERLYQLTWTEGL 117 (268)
T ss_dssp CEEEEEE-E-TTEEEEEETTTTEEEECCSSCSSCS-----------EEE--ECT---TCCEEEEEECSSCEEEEESSSCE
T ss_pred ccceEEE-E-CCEEEEEcCCCCEEEEEECCCCcEE-----------eEE--CCC---CcceeEEEEeCCEEEEEEccCCE
Confidence 3578998 4 5678888899999999999998832 222 111 1222223335556666654 455
Q ss_pred EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC
Q 039790 338 ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP 417 (1395)
Q Consensus 338 ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~ 417 (1395)
+.++|...... +..+.. ...-+.++ +|+ ..|+.+..++.|.++|..+.+.+.++.-
T Consensus 118 v~V~D~~Tl~~--------------------~~ti~~-~~eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 118 LFTWSGMPPQR--------------------ERTTRY-SGEGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EEEEETTTTEE--------------------EEEEEC-SSCCCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEEEECCcCcE--------------------EEEEeC-CCceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 66666533221 222321 22223444 456 5566666789999999999998888763
Q ss_pred CC-C---CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccc----cccccc
Q 039790 418 YD-G---HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAEL----RLEDAF 489 (1395)
Q Consensus 418 h~-~---~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~----~~~~~~ 489 (1395)
.. + ..++.+.|. +|+.++. .-.+..|.+-|..++ +++.++....-... ......
T Consensus 174 ~~~g~~v~~lNeLe~~-----dG~lyan-vw~s~~I~vIDp~TG------------~V~~~Idl~~L~~~~~~~~~~~~~ 235 (268)
T 3nok_A 174 KLRGQPVELINELECA-----NGVIYAN-IWHSSDVLEIDPATG------------TVVGVIDASALTRAVAGQVTNPEA 235 (268)
T ss_dssp EETTEECCCEEEEEEE-----TTEEEEE-ETTCSEEEEECTTTC------------BEEEEEECHHHHHHHTTTCCCTTC
T ss_pred CCCCcccccccccEEe-----CCEEEEE-ECCCCeEEEEeCCCC------------cEEEEEECCCCcccccccccCcCC
Confidence 21 1 145778885 7765544 436789999999998 99999886531100 001112
Q ss_pred cceEEEEeCCCC-EEEEEeC
Q 039790 490 FNQVVALNRAGL-FLLANAK 508 (1395)
Q Consensus 490 ~~~~l~~S~dg~-~LaSgs~ 508 (1395)
+-..+++++++. ++++|-.
T Consensus 236 vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 236 VLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp CEEEEEECTTTCCEEEEETT
T ss_pred ceEEEEEcCCCCEEEEeCCC
Confidence 334789988655 5555543
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.43 E-value=0.051 Score=70.41 Aligned_cols=202 Identities=12% Similarity=0.009 Sum_probs=122.8
Q ss_pred CCCCEEEEEEecCCCEEEEE-EcCCeEEEEECCCC-----ceEEeccCCCCeEEEEEeeCC-CCEEEEEECCCcEEEEEC
Q 039790 215 DPGLVLGRQIAVNRNYICYG-LKLGNIRILNIITA-----LRSLLRGHTQRVTDMAFFAED-VHLLASASVDGRFFIWNI 287 (1395)
Q Consensus 215 h~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~-----~~~~l~~H~~~V~slaf~s~d-g~~LaSgs~DgtV~IWdl 287 (1395)
....+.+++|.+.+.+|+.. ...+.|+.+++... ....+.........|++ ... ++++++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv-D~~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV-DWIHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE-ETTTTEEEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee-eecCCcEEEEecCCCeEEEEeC
Confidence 44677899999865555544 55688999998763 23333334456778999 544 466666667789999998
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCcccc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
.... ...+..........|++++.++.|+.+-.+ ..|.+++......
T Consensus 501 dG~~--------------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~----------------- 549 (791)
T 3m0c_C 501 KGVK--------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----------------- 549 (791)
T ss_dssp TSSS--------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-----------------
T ss_pred CCCe--------------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-----------------
Confidence 7543 112222333446689999988888887654 4566665532111
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCC-CCeeEEEEeecCCCCCcEEEEEec
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG-HPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~-~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
..++...-...+.|++.+.+++++++=...+.|..+|+........+..... ....+|++. +.+|+.+-.
T Consensus 550 ---~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~------~~~lYwtD~ 620 (791)
T 3m0c_C 550 ---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF------EDKVFWTDI 620 (791)
T ss_dssp ---EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE------TTEEEEEET
T ss_pred ---EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe------CCEEEEEEC
Confidence 1222223357889999987745555555567899999865443333332211 134566664 334555455
Q ss_pred CCCeEEEEECCCC
Q 039790 445 LNRELKIWASAEE 457 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg 457 (1395)
..+.|...|..++
T Consensus 621 ~~~~I~~~dk~tG 633 (791)
T 3m0c_C 621 INEAIFSANRLTG 633 (791)
T ss_dssp TTTEEEEEETTTC
T ss_pred CCCEEEEEeCCCC
Confidence 6778887777666
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.41 E-value=0.075 Score=61.20 Aligned_cols=199 Identities=8% Similarity=-0.057 Sum_probs=123.4
Q ss_pred CEEEEEEecCCCEEE-EEEcCCeEEEEECCCCc--eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCC
Q 039790 218 LVLGRQIAVNRNYIC-YGLKLGNIRILNIITAL--RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEE 294 (1395)
Q Consensus 218 ~V~~va~Spdg~~La-sGs~DG~IrIWd~~~~~--~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~ 294 (1395)
.+.+++|.+.+..|. +-...+.|+.++..++. ...+...-.....+++...++.++++-...+.|.++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-- 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--
Confidence 456788988655554 44567889999988763 2233333345778888224566666666778999999875330
Q ss_pred CCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe--CCeEEEEEcCCCCccccccCCCCCccCccccccceEEE
Q 039790 295 DKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI--GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV 372 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~--~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l 372 (1395)
..+..........++++|.++.++.+.. ...|.+++...... ...+
T Consensus 114 ------------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------------------~~~~ 161 (318)
T 3sov_A 114 ------------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------------------FIII 161 (318)
T ss_dssp ------------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC--------------------EEEE
T ss_pred ------------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe--------------------EEEE
Confidence 1112233344567899998888877764 36677776532111 1122
Q ss_pred cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEE
Q 039790 373 GKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIW 452 (1395)
Q Consensus 373 ~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IW 452 (1395)
...-...+.|+|++++++++++=+..+.|..+|+........+.+... ....+++. .+..+++ ....+.|..+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~-----~~~lywt-d~~~~~V~~~ 234 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLF-----EDILYWT-DWSTHSILAC 234 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS-CEEEEEEE-----TTEEEEE-ETTTTEEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC-CceEEEEe-----CCEEEEE-ecCCCeEEEE
Confidence 222345789999997755666666678899999864333223332333 67788885 2334444 5477889999
Q ss_pred ECCCC
Q 039790 453 ASAEE 457 (1395)
Q Consensus 453 Dl~tg 457 (1395)
|..++
T Consensus 235 ~~~~G 239 (318)
T 3sov_A 235 NKYTG 239 (318)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 98776
No 280
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.40 E-value=0.054 Score=67.87 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=38.4
Q ss_pred CCEEEEEEcCCeEEEEECCCCceE-EeccCCCC---------eEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 228 RNYICYGLKLGNIRILNIITALRS-LLRGHTQR---------VTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 228 g~~LasGs~DG~IrIWd~~~~~~~-~l~~H~~~---------V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
+..|++++.++.|+-+|..+|+.. .+...... ...+++ .+..|+.++.|+.|+.+|..+|+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~---~~~~v~~~t~dg~l~AlD~~TG~ 138 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI---YGDKVFFGTLDASVVALNKNTGK 138 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE---ETTEEEEEETTTEEEEEESSSCC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE---ECCEEEEEeCCCEEEEEECCCCC
Confidence 344555555445888999888532 33222110 022333 35678888899999999999998
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.36 E-value=0.083 Score=58.71 Aligned_cols=215 Identities=11% Similarity=0.099 Sum_probs=122.8
Q ss_pred EeccCCCCeEEEEEeeCCC-CEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEE
Q 039790 252 LLRGHTQRVTDMAFFAEDV-HLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEIL 330 (1395)
Q Consensus 252 ~l~~H~~~V~slaf~s~dg-~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~ll 330 (1395)
.+.+-.+.+..|+| .+++ .++++...++.|...|.. ++ .+..+.+ ......-.|++.+++.+++
T Consensus 21 ~l~g~~~~lSGla~-~~~~~~L~aV~d~~~~I~~ld~~-g~-----------v~~~i~l--~g~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 21 EIAGITNNISSLTW-SAQSNTLFSTINKPAAIVEMTTN-GD-----------LIRTIPL--DFVKDLETIEYIGDNQFVI 85 (255)
T ss_dssp ECTTCCSCEEEEEE-ETTTTEEEEEEETTEEEEEEETT-CC-----------EEEEEEC--SSCSSEEEEEECSTTEEEE
T ss_pred ECCCcccCcceeEE-eCCCCEEEEEECCCCeEEEEeCC-CC-----------EEEEEec--CCCCChHHeEEeCCCEEEE
Confidence 45566678999999 5654 456667888999999987 65 2223322 2224455788887775444
Q ss_pred EEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEE----cccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 039790 331 MLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV----GKHDGEITELSMCQWLTTRLASASLDGTVKIWDD 406 (1395)
Q Consensus 331 a~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l----~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl 406 (1395)
+.-..+.++++.....+... . .. ...+ .........|+|++.+ ..|.++.......||.+
T Consensus 86 s~E~~~~l~~~~v~~~~~i~-------------~-~~-~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVK-------------I-LK-KIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp EETTTTEEEEEEECTTCCEE-------------E-EE-EEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEE
T ss_pred EECCCCcEEEEEcCCCCeee-------------e-ee-eeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEE
Confidence 43345667766654332100 0 00 0001 1234567899999998 45555555444444444
Q ss_pred C---CCceeEEec-------CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEe
Q 039790 407 R---KSTPLAVLR-------PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLE 476 (1395)
Q Consensus 407 ~---sg~~l~tl~-------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~ 476 (1395)
. .+..+..+. .+-. .+.+|+|. |....|++.+..++.|.++|.. + +.+..+.
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~-d~S~l~~d----p~tg~lliLS~~s~~L~~~d~~-g------------~~~~~~~ 211 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLD-DVSGAEFN----QQKNTLLVLSHESRALQEVTLV-G------------EVIGEMS 211 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSS-CCCEEEEE----TTTTEEEEEETTTTEEEEECTT-C------------CEEEEEE
T ss_pred cccccCCceeeecchhhccccccC-CceeEEEc----CCCCeEEEEECCCCeEEEEcCC-C------------CEEEEEE
Confidence 3 122233331 1222 57899998 5544444445588999999965 3 6666666
Q ss_pred ccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 477 LKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 477 ~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
...+...-...-.--..++|.++|++.++ +..+.+|.+.
T Consensus 212 L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 212 LTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp CSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred cCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 55432100000011236999999997776 6667777665
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.018 Score=69.37 Aligned_cols=158 Identities=8% Similarity=-0.028 Sum_probs=98.6
Q ss_pred CeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC-
Q 039790 259 RVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN- 336 (1395)
Q Consensus 259 ~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~- 336 (1395)
....|+| .+ ++..|+.+...+.|+.+|+..+. +..+.........++|+++++.++++...+
T Consensus 138 ~P~~lav-dp~~~g~Lyv~d~~~~I~~id~~~~~---------------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~ 201 (430)
T 3tc9_A 138 GAVWLSF-DPKNHNHLYLVGEQHPTRLIDFEKEY---------------VSTVYSGLSKVRTICWTHEADSMIITNDQNN 201 (430)
T ss_dssp CCCEEEE-ETTEEEEEEEEEBTEEEEEEETTTTE---------------EEEEECCCSCEEEEEECTTSSEEEEEECCSC
T ss_pred CCCEEEE-CCCCCCeEEEEeCCCcEEEEECCCCE---------------EEEEecCCCCcceEEEeCCCCEEEEEeCCCC
Confidence 5678899 65 34455555555889999988654 112222344566899999998788777632
Q ss_pred ----eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee
Q 039790 337 ----RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL 412 (1395)
Q Consensus 337 ----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l 412 (1395)
.++.++. .+.. .....+. .......++++|+++.++++-..++.|..||...+...
T Consensus 202 ~~~~~v~~~~~--~g~~-----------------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 202 NDRPNNYILTR--ESGF-----------------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp TTSEEEEEEEG--GGTS-----------------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cccceEEEEeC--CCce-----------------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 2222322 1110 0001111 12345778899944367777667889999998876542
Q ss_pred EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 413 AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 413 ~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
..+..........|+|+ |+|++|+.+...++.|..|+...
T Consensus 262 ~~~~~~~~~~P~gia~~----pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQFH----PSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEECSSSSCCEEEEEC----TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEcCCCCcceeEEEc----CCCCEEEEEECCCCEEEEEeCCc
Confidence 22222121267899998 99997776666889999988753
No 283
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.22 E-value=0.043 Score=62.54 Aligned_cols=198 Identities=10% Similarity=0.026 Sum_probs=114.0
Q ss_pred CCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CC
Q 039790 258 QRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GN 336 (1395)
Q Consensus 258 ~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~ 336 (1395)
....+++| .++++++++-..++.|+.||..... ..... .......+++.+++. ++++.. .+
T Consensus 32 ~~pegia~-~~~g~lyv~d~~~~~I~~~d~~g~~---------------~~~~~-~~~~p~gia~~~dG~-l~vad~~~~ 93 (306)
T 2p4o_A 32 TFLENLAS-APDGTIFVTNHEVGEIVSITPDGNQ---------------QIHAT-VEGKVSGLAFTSNGD-LVATGWNAD 93 (306)
T ss_dssp CCEEEEEE-CTTSCEEEEETTTTEEEEECTTCCE---------------EEEEE-CSSEEEEEEECTTSC-EEEEEECTT
T ss_pred CCcceEEE-CCCCCEEEEeCCCCeEEEECCCCce---------------EEEEe-CCCCceeEEEcCCCc-EEEEeccCC
Confidence 45778999 7788877777788999999876421 11111 123466789999987 444443 22
Q ss_pred --eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-eE
Q 039790 337 --RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP-LA 413 (1395)
Q Consensus 337 --~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~-l~ 413 (1395)
.+++++... +... .+..+ ........+++.+++ ..+++-..++.|.++|...+.. +.
T Consensus 94 ~~~v~~~d~~~-g~~~-----------------~~~~~-~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 94 SIPVVSLVKSD-GTVE-----------------TLLTL-PDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp SCEEEEEECTT-SCEE-----------------EEEEC-TTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cceEEEEcCCC-CeEE-----------------EEEeC-CCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEE
Confidence 366665422 1110 00111 112233455555544 4555555688999999876531 21
Q ss_pred EecC-------CCC-CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc
Q 039790 414 VLRP-------YDG-HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL 485 (1395)
Q Consensus 414 tl~~-------h~~-~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~ 485 (1395)
...+ ... .....| + +++++|+.+...++.|..||+... +.. .....+... ...
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s----~dg~~lyv~d~~~~~I~~~~~~~~-g~~--------~~~~~~~~~-~~P--- 214 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--K----RFGNFLYVSNTEKMLLLRIPVDST-DKP--------GEPEIFVEQ-TNI--- 214 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--E----EETTEEEEEETTTTEEEEEEBCTT-SCB--------CCCEEEEES-CCC---
T ss_pred EECCccccccccCCCCcCCCc--C----cCCCEEEEEeCCCCEEEEEEeCCC-CCC--------CccEEEecc-CCC---
Confidence 1110 011 134555 6 788888777778899999998751 100 011111110 111
Q ss_pred cccccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 486 EDAFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 486 ~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
..++++++|+++++....+.|++|+..
T Consensus 215 ------~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 215 ------DDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp ------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred ------CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 138889999998888888899998853
No 284
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.20 E-value=0.06 Score=67.46 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=24.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEecCC
Q 039790 391 RLASASLDGTVKIWDDRKSTPLAVLRPY 418 (1395)
Q Consensus 391 ~LaSgs~Dg~IrIWDl~sg~~l~tl~~h 418 (1395)
+|+.++.+|.++++|..+|+.+..+...
T Consensus 338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 338 ATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEECCCceEEEEECCCCCEecccccc
Confidence 7888999999999999999988776543
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.18 E-value=0.008 Score=77.96 Aligned_cols=157 Identities=14% Similarity=0.132 Sum_probs=90.8
Q ss_pred CeEEEEEee-CCCCEEEEEEC-CC----cEEEEECCCC-CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEE
Q 039790 259 RVTDMAFFA-EDVHLLASASV-DG----RFFIWNITEG-PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILM 331 (1395)
Q Consensus 259 ~V~slaf~s-~dg~~LaSgs~-Dg----tV~IWdl~tg-~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla 331 (1395)
.+...+| + +||++|+-+.. +| +|+++|+.++ +... . . +. .....+.|+|+++.|+.
T Consensus 175 ~~~~~~~-S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~------~-~---~~------~~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 175 DVMEVKP-APPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA------D-K---VS------GTNGEIVWGPDHTSLFY 237 (751)
T ss_dssp EEEEEEE-CTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC------C-C---EE------EECSCCEECSSTTEEEE
T ss_pred EEeeeEe-cCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC------c-c---cc------CceeeEEEecCCCEEEE
Confidence 6788999 8 99998875543 33 5999999988 5110 0 0 10 01246889999998888
Q ss_pred EEeCC-----eEEEEEcCCCCccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeC---CCcEE
Q 039790 332 LAIGN-----RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASL---DGTVK 402 (1395)
Q Consensus 332 ~g~~~-----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~---Dg~Ir 402 (1395)
+..+. .+++++...... ....++. .+......+.|+||| ++|+..+. ...|.
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~------------------~~~lv~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~l~ 298 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQS------------------EDVCLYEEHNPLFSAFMYKAADT-NTLCIGSQSPETAEVH 298 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGG------------------GCEEEEECCCTTCEEEEEECTTS-SEEEEEEECSSCEEEE
T ss_pred EEECCCCCCCEEEEEECCCCch------------------hcEEEEecCCCceEEEEEECCCC-CEEEEEecCCCCceEE
Confidence 87642 344443321100 0022222 233456789999999 66655442 34588
Q ss_pred EEeCCCCc-ee--EEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC----CeEEEEECCC
Q 039790 403 IWDDRKST-PL--AVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN----RELKIWASAE 456 (1395)
Q Consensus 403 IWDl~sg~-~l--~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D----g~I~IWDl~t 456 (1395)
++|+.++. .. ..+........+++.|. . |..|+..+..+ ..|.++|+.+
T Consensus 299 ~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~----~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 299 LLDLRKGNAHNTLEIVRPREKGVRYDVQMH----G-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEESSSCTTCCCEEESSCCCTTCCEEEEEE----T-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EEECCCCCCCceeEEeecCCCCceEEEeee----e-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 89988762 22 44433322266777775 3 55444434243 3566666654
No 286
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.09 E-value=0.28 Score=66.18 Aligned_cols=288 Identities=14% Similarity=0.093 Sum_probs=148.6
Q ss_pred CCCEEEEEEecC------CCEEEEEEc-CCeEEEEECCCCceE---EeccCCCCeEEEEEee-CCCCEEEEEECCCcEEE
Q 039790 216 PGLVLGRQIAVN------RNYICYGLK-LGNIRILNIITALRS---LLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFI 284 (1395)
Q Consensus 216 ~~~V~~va~Spd------g~~LasGs~-DG~IrIWd~~~~~~~---~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~I 284 (1395)
...|.|+++.+. ++++|.|++ |++|+|+++.+-... .+.+ .....++.+.. ....+|..|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 467999998863 479999997 999999999864322 2221 22445555522 23457889999999876
Q ss_pred EECC--CCCCCCCCcccccceEEEE-EEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccC
Q 039790 285 WNIT--EGPDEEDKPQILGKIVVAI-QILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCP 361 (1395)
Q Consensus 285 Wdl~--tg~~~~~~~~~~~~~i~~l-~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~ 361 (1395)
+.+. +|. ....- .+.+ ...+.-..+...+..-+.++++.-.+.+.... +
T Consensus 632 ~~~d~~tg~-----------l~d~r~~~LG--~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~--~------------- 683 (1158)
T 3ei3_A 632 FGLNIETGL-----------LSDRKKVTLG--TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH--K------------- 683 (1158)
T ss_dssp EEECTTTCC-----------EEEEEEEECC--SSCCEEEEEESSSCEEEEEESSSCEEEEESSS--S-------------
T ss_pred EEEcCCCCc-----------cccceeEEcC--CCceEEEEEeeCCceeEEEECCCCEEEEEcCC--c-------------
Confidence 6654 333 11111 1222 23333333444443333333333333333211 1
Q ss_pred ccccccceEEEcccCCCe-EEEEEecCC-CcEEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 362 VDELINGVQLVGKHDGEI-TELSMCQWL-TTRLASASLDGTVKIWDDRKST--PLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 362 ~~~~~~~~~~l~~h~~~V-~slafspdg-~~~LaSgs~Dg~IrIWDl~sg~--~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
+....-....+ ....|+... +.-++.. .++.++|.-+..-. .++++.-. ..+..++|. |+.+
T Consensus 684 -------l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~--~Tprri~y~----~~~~ 749 (1158)
T 3ei3_A 684 -------LVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLY--ESPRKICYQ----EVSQ 749 (1158)
T ss_dssp -------EEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEECS--SEEEEEEEE----GGGT
T ss_pred -------eEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeCC--CCceEEEEc----CCCC
Confidence 11100011122 223343221 1234433 34568888765432 23344332 268888887 6666
Q ss_pred EEEEEecCC------C------------------------------------------eEEEEECCCCCCCCCCCCcccc
Q 039790 438 VLITGGPLN------R------------------------------------------ELKIWASAEEEGWLLPSDIESW 469 (1395)
Q Consensus 438 ~L~s~Gs~D------g------------------------------------------~I~IWDl~tg~~~~~~~~~~~~ 469 (1395)
.++.+.+.. + .|++.|- .+|
T Consensus 750 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp------------~t~ 817 (1158)
T 3ei3_A 750 CFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQ------------HTF 817 (1158)
T ss_dssp EEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEET------------TTC
T ss_pred EEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeC------------CCC
Confidence 554433111 1 1222222 344
Q ss_pred cEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEe----------CCCeEEEEEcCCCCCCCCcceeeeeeeeccc
Q 039790 470 KCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANA----------KKNAIYAIHMDYGPNPASTRMDYIAEFTVTM 538 (1395)
Q Consensus 470 ~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs----------~Dg~I~iWdl~~g~~~~~~~~~~i~~f~~~~ 538 (1395)
+.+..+....... ..-...+.|..+ ..+|+.|+ ..|.|++|++.. .++..+.+....+
T Consensus 818 ~~i~~~~l~~nE~-----~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~------~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 818 EVLHAHQFLQNEY-----ALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD------GKLQTVAEKEVKG 886 (1158)
T ss_dssp CEEEEEECCTTEE-----EEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET------TEEEEEEEEEESS
T ss_pred eEEEEEeCCCCcc-----eEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC------CEEEEEEEEEcCC
Confidence 5555555543221 111122334333 46777776 457899999972 2677777777777
Q ss_pred cEEEEecCCCCcCcCCCCeEEEEEcCCCcee
Q 039790 539 PILSLTGTTTDASPDGEHIVQIYCVQTQAIQ 569 (1395)
Q Consensus 539 ~ils~~~~~~d~~~s~dg~V~lWdv~t~~i~ 569 (1395)
++.++....-..+++-...|+||++..++..
T Consensus 887 ~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L 917 (1158)
T 3ei3_A 887 AVYSMVEFNGKLLASINSTVRLYEWTTEKEL 917 (1158)
T ss_dssp CEEEEEEETTEEEEEETTEEEEEEECTTSCE
T ss_pred cCEEEeeeCCEEEEEcCCEEEEEECCCCceE
Confidence 7777665441222344568999999876533
No 287
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.09 E-value=0.42 Score=60.35 Aligned_cols=230 Identities=10% Similarity=-0.024 Sum_probs=138.4
Q ss_pred CEEEEEEcCCeEEEEECCCCceE-Ee-ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 229 NYICYGLKLGNIRILNIITALRS-LL-RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~~-~l-~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
.+|+.+ ..+.|+..|+++.... .+ ...-..+..|+|...++.++++-..++.|+.+++.....
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-------------- 71 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-------------- 71 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc--------------
Confidence 455555 4578999999876422 21 122346889999444556666666788999999875431
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
..+..........+++...++.++.+-.. +.|.+++...... ..++...-.....|++.
T Consensus 72 ~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--------------------~~l~~~~l~~P~~iavd 131 (628)
T 4a0p_A 72 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--------------------QVLVWKDLDSPRALALD 131 (628)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--------------------EEEECSSCCCEEEEEEE
T ss_pred EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--------------------EEEEeCCCCCcccEEEc
Confidence 11222222345678888888878777654 4555555422111 11222334567899999
Q ss_pred cCCCcEEEEE-eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCC
Q 039790 386 QWLTTRLASA-SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPS 464 (1395)
Q Consensus 386 pdg~~~LaSg-s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~ 464 (1395)
|..+.++++- +..+.|...++........+. .-. ....|+++ +++..|..+-...+.|..+|+...
T Consensus 132 p~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~-~P~GlalD----~~~~~LY~aD~~~~~I~~~d~dG~------- 198 (628)
T 4a0p_A 132 PAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVG-RANGLTID----YAKRRLYWTDLDTNLIESSNMLGL------- 198 (628)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCS-SEEEEEEE----TTTTEEEEEETTTTEEEEEETTSC-------
T ss_pred cCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCC-CcceEEEc----cccCEEEEEECCCCEEEEEcCCCC-------
Confidence 8654555543 225678888875444333333 233 78999999 877777777767889999998654
Q ss_pred CcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 465 DIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 465 ~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
.. ..+....... ..+++.. +.++++....+.|+..|..+|..
T Consensus 199 -----~~-~v~~~~l~~P---------~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 199 -----NR-EVIADDLPHP---------FGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp -----SC-EEEEECCSCE---------EEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred -----ce-EEeeccCCCc---------eEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 11 1222111111 1355544 56667777788899888777653
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.08 E-value=0.12 Score=59.64 Aligned_cols=204 Identities=10% Similarity=0.069 Sum_probs=124.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCC----CC---E-EEEEEC--CCcEEEEECC--CCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAED----VH---L-LASASV--DGRFFIWNIT--EGPDEE 294 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~d----g~---~-LaSgs~--DgtV~IWdl~--tg~~~~ 294 (1395)
...+++...+.+.+.|||+....+..+.. +.++.+.. -++ |. + +++.-. +++|++|++. ++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~-r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~--- 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDI-RYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT--- 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEE-EEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEE-ecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---
Confidence 34556666778899999996666666653 66777776 332 22 2 334434 5789999874 332
Q ss_pred CCcccccceEEEEEEec-------CCCCCccEEEE--eCCCC--eEEEEEeCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 295 DKPQILGKIVVAIQILA-------DGDSVHPRVCW--HPHKQ--EILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 295 ~~~~~~~~~i~~l~~~~-------~~~~~v~~v~~--sp~~~--~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
+.... .....++.+|+ ++..+ ++|+...++.+..|.....+.+..
T Consensus 113 ------------l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~------------ 168 (355)
T 3amr_A 113 ------------LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI------------ 168 (355)
T ss_dssp ------------EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE------------
T ss_pred ------------eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc------------
Confidence 11111 11255666777 66544 577777778787776644322100
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-----CCceeEEec-CCCCCCeeEEEEeecCCCCCc
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR-----KSTPLAVLR-PYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~-----sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
..+.++.|. ....+-.|.+.+.. .+|..+-.|.-|..||.+ +++.+..+. ++-...+..|++-+. ++++
T Consensus 169 -~~~lVR~f~-lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~--~~g~ 243 (355)
T 3amr_A 169 -SGKKVRAFK-MNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYA--ADGK 243 (355)
T ss_dssp -EEEEEEEEE-CSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEEC--GGGC
T ss_pred -cceEEEEec-CCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEec--CCCC
Confidence 011134444 34578888888876 688888888766666754 345665553 332225788887411 4555
Q ss_pred -EEEEEecCCCeEEEEECC-CCCCCCCCCCcccccEEEEEec
Q 039790 438 -VLITGGPLNRELKIWASA-EEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 438 -~L~s~Gs~Dg~I~IWDl~-tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
||++++-.++++.+||.. +. +.+..|..
T Consensus 244 gyLivSsQG~~s~~Vydr~~~~------------~~vg~f~I 273 (355)
T 3amr_A 244 GYLMASSQGNSSYAIYDRQGKN------------KYVADFRI 273 (355)
T ss_dssp EEEEEEEGGGTEEEEEESSTTC------------CEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCC------------cEEEEEEe
Confidence 677766578899999986 33 66777753
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.02 E-value=0.038 Score=66.66 Aligned_cols=209 Identities=8% Similarity=-0.062 Sum_probs=118.6
Q ss_pred CeEEEEEeeCC--CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC
Q 039790 259 RVTDMAFFAED--VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN 336 (1395)
Q Consensus 259 ~V~slaf~s~d--g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~ 336 (1395)
....|+| .++ ...|+.+...+.|+.+|..++. +..+.........++|++++. ++++...+
T Consensus 140 ~P~gvav-d~~s~~g~Lyv~D~~~~I~~id~~~g~---------------v~~~~~~~~~P~giavd~dG~-lyVad~~~ 202 (433)
T 4hw6_A 140 NIWRMMF-DPNSNYDDLYWVGQRDAFRHVDFVNQY---------------VDIKTTNIGQCADVNFTLNGD-MVVVDDQS 202 (433)
T ss_dssp CCCEEEE-CTTTTTCEEEEECBTSCEEEEETTTTE---------------EEEECCCCSCEEEEEECTTCC-EEEEECCS
T ss_pred CCceEEE-ccccCCCEEEEEeCCCCEEEEECCCCE---------------EEEeecCCCCccEEEECCCCC-EEEEcCCC
Confidence 4678999 653 3445555444899999997765 222222344567899999998 66666532
Q ss_pred -----eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 039790 337 -----RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP 411 (1395)
Q Consensus 337 -----~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~ 411 (1395)
.++.+.... . | .....+. .......++++++++.++++-..++.|+.||..++..
T Consensus 203 ~~~~~gv~~~~~~~--~---~--------------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 203 SDTNTGIYLFTRAS--G---F--------------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp CTTSEEEEEECGGG--T---T--------------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred CcccceEEEEECCC--C---e--------------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 233332210 0 0 0001111 2344567889994436666666778999999887766
Q ss_pred eEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc-C--cccc---c
Q 039790 412 LAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK-S--SAEL---R 484 (1395)
Q Consensus 412 l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h-~--~~i~---~ 484 (1395)
...+ .......-..|+|+ |+|++|..+...++.|+.+++....+.+ ....++.+. . +... .
T Consensus 263 ~~~~~~~~~~~~~~~ia~d----pdG~~LYvad~~~~~I~~~~~d~~~~~~--------~~~~~~ag~~g~~g~~dg~~~ 330 (433)
T 4hw6_A 263 TEEEVMMDTKGSNFHIVWH----PTGDWAYIIYNGKHCIYRVDYNRETGKL--------AVPYIVCGQHSSPGWVDGMGT 330 (433)
T ss_dssp EEEEEECSCCSSCEEEEEC----TTSSEEEEEETTTTEEEEEEBCTTTCCB--------CCCEEEEECTTCCCCBCEEGG
T ss_pred EEEEeccCCCCCcccEEEe----CCCCEEEEEeCCCCEEEEEeCCCCCccc--------CcEEEEEecCCCCccCCCccc
Confidence 3333 21111144579999 9999777766678999998875320100 011222221 0 0000 0
Q ss_pred ccccccceEEEE---------eCCCCEEEEEeCCCeEEEEE
Q 039790 485 LEDAFFNQVVAL---------NRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 485 ~~~~~~~~~l~~---------S~dg~~LaSgs~Dg~I~iWd 516 (1395)
...-..-..+++ ..+|.++++-...+.|+.++
T Consensus 331 ~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 331 GARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp GSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred ceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 000001234777 77788888887788888776
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.99 E-value=0.12 Score=59.73 Aligned_cols=234 Identities=9% Similarity=-0.022 Sum_probs=122.7
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEe---ccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALR-SLL---RGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~-~~l---~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
...+.++.|.+ +..++ ++.+|.|.. ..+.|.. ..+ ..+.+.+..|.+ ..++.+++.+ .+|.|+. ..+.|+
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~-~~~~~~~~~~-~~g~v~~-S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKA-LGNGSAEMIT-NVGAIYR-TKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEE-EETTEEEEEE-TTCCEEE-ESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEE-ECCCCEEEEe-CCccEEE-EcCCCC
Confidence 34678888875 44444 455675543 3333421 111 124456888888 4555555544 5665432 122232
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.+. . ........+..+.+.+++ .+++++..+.+++-++.... . |. ..
T Consensus 153 ----------tW~-~--~~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~---t-----------W~-----~~ 199 (327)
T 2xbg_A 153 ----------NWQ-A--LVQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQT---A-----------WE-----PH 199 (327)
T ss_dssp ----------SEE-E--EECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCS---S-----------CE-----EE
T ss_pred ----------CCE-E--eecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCC---c-----------ee-----EC
Confidence 011 1 112233456678888876 46677777777776542111 1 11 11
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec-C--CCCCCeeEEEEeecCCCCCcEEEEEecCCCe
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR-P--YDGHPVNCVTFLIGPHPQHIVLITGGPLNRE 448 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~-~--h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~ 448 (1395)
-......+..+++.+++ .++ .++.+|.+++++...|+.-..+. + .....+.+|.|. +++..+++ | .++.
T Consensus 200 ~~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~----~~~~~~~~-g-~~g~ 271 (327)
T 2xbg_A 200 NRTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR----TPNEVWLA-G-GAGA 271 (327)
T ss_dssp ECCSSSCEEEEEECTTS-CEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES----SSSCEEEE-E-STTC
T ss_pred CCCCCCccceeEECCCC-CEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec----CCCEEEEE-e-CCCe
Confidence 12345678899999887 444 45568888887533233222222 1 011258899997 77776665 5 5777
Q ss_pred EEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEE
Q 039790 449 LKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIH 516 (1395)
Q Consensus 449 I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWd 516 (1395)
| ++..+.+ .+|..+........ .+ ..+.|..++. +++++.+|.|+-++
T Consensus 272 i-~~S~DgG---------~tW~~~~~~~~~~~-------~~--~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 272 L-LCSQDGG---------QTWQQDVDVKKVPS-------NF--YKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp E-EEESSTT---------SSCEECGGGTTSSS-------CC--CEEEEEETTE-EEEECSTTEEEEEC
T ss_pred E-EEeCCCC---------cccEEcCccCCCCC-------Ce--EEEEEECCCc-eEEEcCCceEEEEc
Confidence 7 4555555 44443211000011 11 1366654554 55667788776654
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.95 E-value=1.5 Score=55.14 Aligned_cols=351 Identities=10% Similarity=0.050 Sum_probs=176.6
Q ss_pred cccceeeeeCCCCCEEEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEE
Q 039790 205 EVTPITKYISDPGLVLGRQIAVNRNYICYG-LKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFF 283 (1395)
Q Consensus 205 ~~~~i~~l~~h~~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~ 283 (1395)
.+..+..+...-....++++++++..|..+ ...+.|..+|++......+...-.....|++ .. +.++++-...+.|.
T Consensus 154 dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav-~~-~~ly~tD~~~~~I~ 231 (628)
T 4a0p_A 154 DGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQ-YQ-DYIYWTDWSRRSIE 231 (628)
T ss_dssp TSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEE-ET-TEEEEEETTTTEEE
T ss_pred CCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEE-EC-CEEEEecCCCCEEE
Confidence 333344444455678899999987777776 4568899999987654555555556678888 33 45566665678899
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCC------C-----CCccEEEEeCC-CCe----------------------E
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADG------D-----SVHPRVCWHPH-KQE----------------------I 329 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~------~-----~~v~~v~~sp~-~~~----------------------l 329 (1395)
..|..+|+.......... ....+.++... . .....+|.... +.+ +
T Consensus 232 ~~dk~tg~~~~~l~~~~~-~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 310 (628)
T 4a0p_A 232 RANKTSGQNRTIIQGHLD-YVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF 310 (628)
T ss_dssp EEETTTCCSCEEEECSCC-SCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSE
T ss_pred EEECCCCCceEEEecCCC-CcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccce
Confidence 999877753211100000 01122222210 0 01111232221 111 1
Q ss_pred EEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 039790 330 LMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK 408 (1395)
Q Consensus 330 la~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s 408 (1395)
+..+....|.++..... ......+. ..-..+..|+|.+.++.++++=...+.|+.++...
T Consensus 311 Ll~s~~~~i~~i~l~~~-------------------~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g 371 (628)
T 4a0p_A 311 LLFSQKSAINRMVIDEQ-------------------QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDG 371 (628)
T ss_dssp EEEEETTEEEEECCCTT-------------------CCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eeeeccceEEEEecccc-------------------cCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCC
Confidence 11222222222211100 00001111 12245788999987645555555578899998765
Q ss_pred CceeEEecC------CCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEecc-Ccc
Q 039790 409 STPLAVLRP------YDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELK-SSA 481 (1395)
Q Consensus 409 g~~l~tl~~------h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h-~~~ 481 (1395)
......+.. ... .+..|++. ..++.|..+.+..+.|.+.++.. +....+... ...
T Consensus 372 ~~~~~v~~~~~~~~~~~~-~p~glAvD----~~~~nLY~td~~~~~I~v~~~~G-------------~~~~~l~~~~l~~ 433 (628)
T 4a0p_A 372 SQGFTVVVSSVPSQNLEI-QPYDLSID----IYSRYIYWTCEATNVINVTRLDG-------------RSVGVVLKGEQDR 433 (628)
T ss_dssp CSCEEEEC--------CC-CEEEEEEE----TTTTEEEEEETTTTEEEEEETTS-------------CEEEEEEECTTCC
T ss_pred CCceEEEEcccccccccC-CcceEEee----ccCCeEEEEcCCCCEEEEEECCC-------------CeEEEEEeCCCCc
Confidence 443333332 122 68899998 77777766666888999998853 333333221 111
Q ss_pred cccccccccceEEEEeC-CCCEEEEEeCCC--eEEEEEcCCCCCCCCcceeeeeeeecccc-EEEEecCCCCcC--c-CC
Q 039790 482 ELRLEDAFFNQVVALNR-AGLFLLANAKKN--AIYAIHMDYGPNPASTRMDYIAEFTVTMP-ILSLTGTTTDAS--P-DG 554 (1395)
Q Consensus 482 i~~~~~~~~~~~l~~S~-dg~~LaSgs~Dg--~I~iWdl~~g~~~~~~~~~~i~~f~~~~~-ils~~~~~~d~~--~-s~ 554 (1395)
...+++.| .|.++++..... .|+..+++ |.. +...+.. ....| -+.++... ..+ + ++
T Consensus 434 ---------Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~----~~~l~~~-~l~~P~gla~D~~~-~~LYw~D~~ 497 (628)
T 4a0p_A 434 ---------PRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTE----REVLFFS-GLSKPIALALDSRL-GKLFWADSD 497 (628)
T ss_dssp ---------EEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCS----CEEEECS-SCSCEEEEEEETTT-TEEEEEETT
T ss_pred ---------eeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCC----cEEEEec-cCCCccEEEEeCCC-CEEEEEeCC
Confidence 12477777 677666655444 45555554 221 1111111 11111 23444332 111 2 23
Q ss_pred CCeEEEEEcCCCceeeec---ccceEEecCCCCCeecccCCCceEEEeecCCCCcceeec
Q 039790 555 EHIVQIYCVQTQAIQQYA---LDLSQCLPPPLENAELEKTDSNATRAFDVANPDGSASLE 611 (1395)
Q Consensus 555 dg~V~lWdv~t~~i~~~~---~~~~~cl~~s~d~l~~~~sd~~v~~iWD~~tg~~~~~l~ 611 (1395)
.+.|+.+++......... +....-++...+.+-++......+...|-.+|+..+.+.
T Consensus 498 ~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 498 LRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred CCEEEEEeCCCCceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 467777777654332211 111222222335555555555555566766666555544
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.86 E-value=0.25 Score=60.16 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=98.0
Q ss_pred CeEEEEEeeC--CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC-CCCCccEEEE-------eCCCCe
Q 039790 259 RVTDMAFFAE--DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD-GDSVHPRVCW-------HPHKQE 328 (1395)
Q Consensus 259 ~V~slaf~s~--dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~-~~~~v~~v~~-------sp~~~~ 328 (1395)
....|+| .+ +++++++....+.|++.|+..+. +..+..... .-.....++| ++++..
T Consensus 140 ~p~~la~-dp~~~~~Lyv~~~~~~~i~~ID~~~~~------------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAF-DPLNKDHLYICYDGHKAIQLIDLKNRM------------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEE-ETTEEEEEEEEEETEEEEEEEETTTTE------------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEE-ccCCCCEEEEEECCCCeEEEEECCCCE------------EEEEEccCccccCCCcEEEEeecccccCCCCCE
Confidence 5678999 65 35555555555778889988765 112211111 1223567999 999987
Q ss_pred EEEEEeCC-------eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcE
Q 039790 329 ILMLAIGN-------RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTV 401 (1395)
Q Consensus 329 lla~g~~~-------~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~I 401 (1395)
++++...+ .+.+++....+. |... .. ...+.. ......++++|+++.++++-..++.|
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~---~~~~----------~~-~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V 271 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGT---FDDR----------SD-IQLIAA-YKQCNGATIHPINGELYFNSYEKGQV 271 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSC---CSTT----------SC-EEEEEE-ESCCCCEEECTTTCCEEEEETTTTEE
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCc---eeec----------cc-ceeecc-CCCceEEEEcCCCCeEEEEECCCCEE
Confidence 88877664 244443211111 1000 00 011111 12345778899765777777788899
Q ss_pred EEEeCC-------CCce-----------eEE-ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 402 KIWDDR-------KSTP-----------LAV-LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 402 rIWDl~-------sg~~-----------l~t-l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
..||+. ++.. +.. +....+.+.+.|+|+ |+|.+|..+-..++.|+.+|..
T Consensus 272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~----p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH----PTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC----TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEc----CCCCEEEEEeCCCCEEEEEecC
Confidence 999987 5543 122 222222267899999 9999766666688999997654
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.84 E-value=0.32 Score=56.66 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=60.6
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe------ccCCCCeEEEEEeeCC----CCEEEEEECC-----C
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL------RGHTQRVTDMAFFAED----VHLLASASVD-----G 280 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l------~~H~~~V~slaf~s~d----g~~LaSgs~D-----g 280 (1395)
-..-.+++|.++|+++++ ..+|.|++++ ++....+ .........|+| +++ +.+.++-..+ +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~-~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLAL-HPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEE-CTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEE-CCCCCCCCEEEEEEecCCCCCcc
Confidence 456779999999995555 5669999998 4432211 122356889999 776 4444444432 6
Q ss_pred cEEEEECCCCCCCCCCcccccceEEEEEEec---CCCCCccEEEEeCCCCeEEEEE
Q 039790 281 RFFIWNITEGPDEEDKPQILGKIVVAIQILA---DGDSVHPRVCWHPHKQEILMLA 333 (1395)
Q Consensus 281 tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~---~~~~~v~~v~~sp~~~~lla~g 333 (1395)
.|..|+...+. .. .....+.-+. ........++|.+++..+++.+
T Consensus 106 ~v~r~~~~~~~-------~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGER-------GV-LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEECSSC-------EE-EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEeCCCC-------cC-ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 78888876432 00 0001111122 2222345899999995444433
No 294
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.84 E-value=0.29 Score=56.37 Aligned_cols=193 Identities=11% Similarity=0.024 Sum_probs=103.6
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCc---eEEec--cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITAL---RSLLR--GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~---~~~l~--~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
..+.+|.|..++..+++ +.+|.| ++..+.|. ...+. .....+.+|.| .+ +..+ .++.+|.|+. ..+.|+
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~-~~-~~~~-~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSF-QG-NEGW-IVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEE-ET-TEEE-EEEETTEEEE-ESSTTS
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEe-cC-CeEE-EEECCCeEEE-ECCCCC
Confidence 46888888877777775 456765 33344442 22121 23446899999 54 4444 4556675544 223333
Q ss_pred CCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE
Q 039790 292 DEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL 371 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 371 (1395)
.-. .+.........+..+.+..++ .+++++..+.+++-++. +. . | ...
T Consensus 110 tW~-----------~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~g~v~~S~Dg--G~--t-----------W-----~~~ 157 (327)
T 2xbg_A 110 SWS-----------QIPLDPKLPGSPRLIKALGNG-SAEMITNVGAIYRTKDS--GK--N-----------W-----QAL 157 (327)
T ss_dssp SCE-----------ECCCCTTCSSCEEEEEEEETT-EEEEEETTCCEEEESST--TS--S-----------E-----EEE
T ss_pred Cce-----------ECccccCCCCCeEEEEEECCC-CEEEEeCCccEEEEcCC--CC--C-----------C-----EEe
Confidence 100 000000111223456655544 56666666665554331 11 1 1 122
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD--RKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNREL 449 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl--~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I 449 (1395)
...+...+..+++.+++ .+++.+...+..+-+|- .+.+.+. ..... .+..+.+. +++..+++ + .+|.|
T Consensus 158 ~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~-~~~~~~~~----~~g~~~~~-~-~~G~~ 227 (327)
T 2xbg_A 158 VQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSR-RLHNMGFT----PDGRLWMI-V-NGGKI 227 (327)
T ss_dssp ECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCSSCEEEE--CCSSS-CEEEEEEC----TTSCEEEE-E-TTTEE
T ss_pred ecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCCceeECC--CCCCC-ccceeEEC----CCCCEEEE-e-CCceE
Confidence 23455678999999987 67766654444444552 3334332 22333 78999998 88876655 5 68888
Q ss_pred EEEECCCC
Q 039790 450 KIWASAEE 457 (1395)
Q Consensus 450 ~IWDl~tg 457 (1395)
++++...+
T Consensus 228 ~~s~~D~G 235 (327)
T 2xbg_A 228 AFSDPDNS 235 (327)
T ss_dssp EEEETTEE
T ss_pred EEecCCCC
Confidence 88753334
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.73 E-value=0.0057 Score=78.56 Aligned_cols=199 Identities=12% Similarity=-0.009 Sum_probs=115.2
Q ss_pred CCEEEEEEecCCCEEEEE-EcCCeEEEEECCC----Cc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 217 GLVLGRQIAVNRNYICYG-LKLGNIRILNIIT----AL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasG-s~DG~IrIWd~~~----~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
..+.+++|.+.+..|+.. ...+.|+.+++.+ .. ...+...-.....|++....++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 445678899877666665 4568899999876 22 22222222345667872245666666666788999998754
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC--CeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG--NRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~--~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
. ...+..........++++|.+++|+.+..+ +.|.+++......
T Consensus 486 ~--------------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-------------------- 531 (699)
T 1n7d_A 486 K--------------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------------------- 531 (699)
T ss_dssp C--------------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--------------------
T ss_pred c--------------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--------------------
Confidence 3 111222222344578888877777665533 3444443321110
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecC---CCCCCeeEEEEeecCCCCCcEEEEEecC
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRP---YDGHPVNCVTFLIGPHPQHIVLITGGPL 445 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~---h~~~~V~sV~fs~~~~pdg~~L~s~Gs~ 445 (1395)
..++...-...+.|+|++++++++++-+..+.|..+|+.... .+.+.. ... ....|++. .+ .|+.+...
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~-~P~glavd----~~--~lywtd~~ 603 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLA-HPFSLAVF----ED--KVFWTDII 603 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCS-SCCCCEEE----TT--EEEEECST
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCC-CceEeEEE----CC--EEEEEeCC
Confidence 111111223567899999875677776677899999986433 333321 112 45567775 33 34443446
Q ss_pred CCeEEEEECCCC
Q 039790 446 NRELKIWASAEE 457 (1395)
Q Consensus 446 Dg~I~IWDl~tg 457 (1395)
.+.|..+|..++
T Consensus 604 ~~~V~~~d~~~G 615 (699)
T 1n7d_A 604 NEAIFSANRLTG 615 (699)
T ss_dssp TTCEEEEETTTE
T ss_pred CCeEEEEEccCC
Confidence 788999988776
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.65 E-value=0.7 Score=53.87 Aligned_cols=216 Identities=13% Similarity=0.058 Sum_probs=107.8
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEec------cCCCCeEEEEEeeCC----CCEEEEEEC---C---
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLR------GHTQRVTDMAFFAED----VHLLASASV---D--- 279 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~------~H~~~V~slaf~s~d----g~~LaSgs~---D--- 279 (1395)
-....+++|.++|++++ +..+|.|+++|. ++. ..+. ........|+| .++ +.++++-.. +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~-~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLAL-HPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEE-CTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEe-CCCCCcCCEEEEEEeccCCCCCc
Confidence 35678999999998555 456699999974 443 2221 12346889999 665 444444432 3
Q ss_pred -CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-------------CCeEEEEEcCC
Q 039790 280 -GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-------------GNRILKIDSNR 345 (1395)
Q Consensus 280 -gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-------------~~~ii~~d~~~ 345 (1395)
+.|..|+...+... ......+.. .+-.........+.|.|++..+++.+. .++|++++...
T Consensus 104 ~~~v~r~~~~~~~~~----~~~~~~l~~-~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFK----LKEVKTLID-GIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp EEEEEEEEECSSSCC----EEEEEEEEE-EEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred ceEEEEEEECCCCcC----cCccEEEEE-cCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 56777777643100 000011111 111122223457999999964444443 14566665432
Q ss_pred CCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCC---cEEEEeC--------CCC-----
Q 039790 346 VGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDG---TVKIWDD--------RKS----- 409 (1395)
Q Consensus 346 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg---~IrIWDl--------~sg----- 409 (1395)
.- ..+.++. .......+|. ....|+|+++.+.++++-...+ .|.+..- ..+
T Consensus 179 ~~-----p~~npf~-------~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~ 245 (354)
T 3a9g_A 179 RP-----PADNPFP-------NSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRG 245 (354)
T ss_dssp CC-----CTTSSST-------TCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred CC-----CCCCCCC-------CCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCC
Confidence 10 0011100 0011222343 3567999994335555433222 2333221 000
Q ss_pred ---ceeEEe-cCCCCCCeeEEEEeecCC---CCCcEEEEEecCCCeEEEEECCC
Q 039790 410 ---TPLAVL-RPYDGHPVNCVTFLIGPH---PQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 410 ---~~l~tl-~~h~~~~V~sV~fs~~~~---pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.++..+ ..|. ....++|..... .+|.++++ ....+.|...++..
T Consensus 246 ~~~~p~~~~~~~~~--ap~G~~~y~g~~fp~~~G~l~v~-~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 246 EFVDPVIDTGSETW--APSGASFVHGDMFPGLRGWLLIA-CLRGSMLAAVNFGD 296 (354)
T ss_dssp TSCCCSEECTTCCC--CEEEEEECCSSSCGGGTTEEEEE-ETTTTEEEEEEECG
T ss_pred CCcCCEeecCCCCc--CCcceEEECCCCCcccCCcEEEE-EcCCCEEEEEEECC
Confidence 234444 3332 578888841100 35655554 43667787777764
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.60 E-value=0.0074 Score=77.50 Aligned_cols=183 Identities=7% Similarity=-0.107 Sum_probs=100.6
Q ss_pred CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCC-EEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 237 LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVH-LLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 237 DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~-~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
.+.|++.++.+.....+......+..|+| .+.+. ++++-...+.|+.+++......... ..++.....
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~-d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~----------~~~i~~~~~ 453 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDT-EVASNRIYWSDLSQRMICSTQLDRAHGVSSY----------DTVISRDIQ 453 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEE-ETTTTEEEECCTTTTSBEEEESCCCCC-CCC----------CCBCCSCC-
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcc-ccccCeEEEEecCCCeEEEEecCCCCCCcce----------EEEEeCCCC
Confidence 46788888887755444444456778999 55444 4444455688999998751100000 000111111
Q ss_pred CccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCccccccceEEE-cccCCCeEEEEEecCCCcEEE
Q 039790 316 VHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLV-GKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l-~~h~~~V~slafspdg~~~La 393 (1395)
....+++.+.++.|+++-. .+.|.+++..... ...+ .........|++.|.++.+++
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~---------------------~~~l~~~~~~~P~giavDp~~g~ly~ 512 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---------------------RKTLFREQGSKPRAIVVDPVHGFMYW 512 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC---------------------EEEECCCSSCCCCCEECCSSSSCCEE
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc---------------------eEEEEeCCCCCcceEEEccCCCcEEE
Confidence 2335667655555655533 3455555432111 1111 112234577889887645555
Q ss_pred EEeCC-CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 394 SASLD-GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 394 Sgs~D-g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+-... +.|..+++... ....+....-.....|+|+ +++..|+.+-...+.|.++|+..
T Consensus 513 td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd----~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 513 TDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLD----LLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEEC----TTTCCEEEEETTTTEEEEECSSS
T ss_pred cccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEe----ccCCEEEEEecCCCeEEEEccCC
Confidence 54333 67888776533 2333321222267889998 88776666666788999999864
No 298
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.51 E-value=0.27 Score=62.51 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=41.3
Q ss_pred EEEEeeC-CCCEEEEEECCC-----------cEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeE
Q 039790 262 DMAFFAE-DVHLLASASVDG-----------RFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEI 329 (1395)
Q Consensus 262 slaf~s~-dg~~LaSgs~Dg-----------tV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~l 329 (1395)
.+++ .+ ++++++.|+.++ .+.+||+.+++.... ......+......+++..++..+
T Consensus 190 ~~av-~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-----------~~~~~~~~~~~~~~~~~~~g~ly 257 (656)
T 1k3i_A 190 AAAI-EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-----------TVTVTKHDMFCPGISMDGNGQIV 257 (656)
T ss_dssp EEEE-ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-----------EEEECSCCCSSCEEEECTTSCEE
T ss_pred eEEE-EecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-----------cccCCCCCCccccccCCCCCCEE
Confidence 5566 44 888999888653 588999998762211 11112222333356777777655
Q ss_pred EEEEeC-CeEEEEEcC
Q 039790 330 LMLAIG-NRILKIDSN 344 (1395)
Q Consensus 330 la~g~~-~~ii~~d~~ 344 (1395)
+++|.+ ..+.+||..
T Consensus 258 v~GG~~~~~v~~yd~~ 273 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSS 273 (656)
T ss_dssp EECSSSTTCEEEEEGG
T ss_pred EeCCCCCCceEEecCc
Confidence 555533 456666653
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.50 E-value=0.52 Score=59.39 Aligned_cols=226 Identities=7% Similarity=-0.047 Sum_probs=124.2
Q ss_pred CCeEEEEECCCC--ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCC
Q 039790 237 LGNIRILNIITA--LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGD 314 (1395)
Q Consensus 237 DG~IrIWd~~~~--~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~ 314 (1395)
...|++.|+... ....+...-.....|+|...++.++++=...+.|+.+++..... ...+....-
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~-------------~~~v~~~~~ 83 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-------------VQNVVVSGL 83 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEEECSSC
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc-------------eEEEEeCCC
Confidence 467889998865 23333344456889999434454555545567888888875420 011222222
Q ss_pred CCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEE
Q 039790 315 SVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 315 ~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~La 393 (1395)
.....++++..++.++.+... +.|.+++...... ..++...-.....|++.|.++.+++
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~--------------------~~l~~~~l~~P~~Iavdp~~g~ly~ 143 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--------------------KVLFWQELDQPRAIALDPSSGFMYW 143 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECSSCSCCCCEEEETTTTEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE--------------------EEEEeCCCCCCceEEEecCCCeEEE
Confidence 445678999888878777654 4555555432111 1122233445778999997645555
Q ss_pred EEe-CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEE
Q 039790 394 SAS-LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCT 472 (1395)
Q Consensus 394 Sgs-~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l 472 (1395)
+-- ..+.|...++. |.....+..........|+++ +++..|..+-...+.|...|+... ...
T Consensus 144 tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald----~~~~~LY~aD~~~~~I~~~~~dG~------------~~~ 206 (619)
T 3s94_A 144 TDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLD----YEEQKLYWADAKLNFIHKSNLDGT------------NRQ 206 (619)
T ss_dssp EECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEE----TTTTEEEEEETTTCCEEEESSSCC------------EEC
T ss_pred eccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEE----ccCCEEEEEeCCCCeEEEecCCCC------------ccE
Confidence 532 23567666754 333333322222378999998 877777766667888999888654 111
Q ss_pred EEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 039790 473 QTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 473 ~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~ 522 (1395)
..+...... . ..+++..+ .++++....+.|...|..+|+.
T Consensus 207 ~~~~~~~~~------P---~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 207 AVVKGSLPH------P---FALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp ---------------C---CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEeCCCCC------c---eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 111111101 1 12555444 5566666778888888877653
No 300
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.42 E-value=0.61 Score=54.10 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=86.2
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe-------ccCCCCeEEEEEeeCC----CCEEEEEE--CCCcE
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL-------RGHTQRVTDMAFFAED----VHLLASAS--VDGRF 282 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l-------~~H~~~V~slaf~s~d----g~~LaSgs--~DgtV 282 (1395)
-..-++++|.+||+++++--..|.|++++..++....+ ....+....|+| +++ +.+.++-+ .++.|
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~-~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIAL-SPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEE-CTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEe-ccccccCCEEEEEEecCCCCEE
Confidence 35678999999999777765589999998766643222 123456889999 663 44444322 45566
Q ss_pred EEEECCCCCCCCCCccccc-ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-------------CCeEEEEEcCCCCc
Q 039790 283 FIWNITEGPDEEDKPQILG-KIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-------------GNRILKIDSNRVGK 348 (1395)
Q Consensus 283 ~IWdl~tg~~~~~~~~~~~-~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-------------~~~ii~~d~~~~~~ 348 (1395)
.-|.+..+..... .... ..+. ..+-.........+.|.+++..+++.|. .++|++++....-
T Consensus 110 ~R~~~~~~~~~~~--~~~~~~~i~-~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i- 185 (347)
T 3das_A 110 VRMLYDEKKPSGE--QLGAPDTVF-RGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP- 185 (347)
T ss_dssp EEEEBCTTSCTTC--CBCCCEEEE-EEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB-
T ss_pred EEEEeCCCCcccc--cCCCcEEEE-EcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc-
Confidence 6676665321000 0111 1111 1111122233457999999965555553 3567777653210
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEE
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLAS 394 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaS 394 (1395)
..+.++. .....-.+|. ....++|+|+| .++++
T Consensus 186 ----p~~nPf~-------~~~i~a~G~R-Np~Gla~dp~G-~L~~~ 218 (347)
T 3das_A 186 ----APGNPFP-------GSPVYSYGHR-NVQGLAWDDKQ-RLFAS 218 (347)
T ss_dssp ----CTTCSST-------TCCEEEBCCS-BCCEEEECTTC-CEEEE
T ss_pred ----cCCCCCC-------CCeEEeeCCC-CcceEEECCCC-CEEEE
Confidence 0111110 0112233554 35688999976 44444
No 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.37 E-value=1.2 Score=51.69 Aligned_cols=196 Identities=12% Similarity=0.078 Sum_probs=107.8
Q ss_pred CEEEEEEecCCCEEEEEE------------cCCeEEEEECCCC--ceE--Eecc-----CCCCeEEEEEee-CCCC-EEE
Q 039790 218 LVLGRQIAVNRNYICYGL------------KLGNIRILNIITA--LRS--LLRG-----HTQRVTDMAFFA-EDVH-LLA 274 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs------------~DG~IrIWd~~~~--~~~--~l~~-----H~~~V~slaf~s-~dg~-~La 274 (1395)
..-++.+.++|..+++++ .+|.|.+||.++. ... .+.+ .......|.+.. .++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 344566777775544441 6899999999742 222 2332 234677888743 2443 344
Q ss_pred EE-EC--CCcEEEEECCCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEe----------------
Q 039790 275 SA-SV--DGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAI---------------- 334 (1395)
Q Consensus 275 Sg-s~--DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~---------------- 334 (1395)
.+ .. +.+|.+|++..+. .....+..+. ..-...+.+.+.++|. ++++..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~----------~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEE----------KSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTT----------TEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCC----------CEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhcc
Confidence 44 22 4678888887543 1112222222 2234456788888875 333332
Q ss_pred --CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cce
Q 039790 335 --GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-STP 411 (1395)
Q Consensus 335 --~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~~ 411 (1395)
.+.+++++.. .+..+...-..-+.++|+||+..++++-+..+.|..||+.. |..
T Consensus 200 ~~~g~vyr~d~~-----------------------~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l 256 (355)
T 3sre_A 200 LAWSFVTYYSPN-----------------------DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL 256 (355)
T ss_dssp CCCEEEEEECTT-----------------------CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCccEEEEEECC-----------------------eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE
Confidence 1223333220 12222223346789999999955555556778999999863 332
Q ss_pred --eEEecCCCCCCeeEEEEeecCCC-CCcEEEEEecCC-CeEEEEEC
Q 039790 412 --LAVLRPYDGHPVNCVTFLIGPHP-QHIVLITGGPLN-RELKIWAS 454 (1395)
Q Consensus 412 --l~tl~~h~~~~V~sV~fs~~~~p-dg~~L~s~Gs~D-g~I~IWDl 454 (1395)
.+.+. ..+ ....+++. . +|.+.+++. .+ +.|..||.
T Consensus 257 ~~~~~~~-~~g-~PDGi~vD----~e~G~lwva~~-~~g~~v~~~~P 296 (355)
T 3sre_A 257 TPLRVLS-FDT-LVDNISVD----PVTGDLWVGCH-PNGMRIFFYDA 296 (355)
T ss_dssp EEEEEEE-CSS-EEEEEEEC----TTTCCEEEEEE-SCHHHHHSCCT
T ss_pred ecCEEEe-CCC-CCceEEEe----CCCCcEEEEec-CCceEEEEECC
Confidence 23342 233 67888887 7 588777655 34 34444443
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.34 E-value=2.2 Score=51.90 Aligned_cols=271 Identities=12% Similarity=0.046 Sum_probs=140.7
Q ss_pred CEEEEEEec-CCCEEEEE-EcCCeEEEEECCCCceEEeccC----CCCeEEEEE------eeCCCCEEEEEECCC-c---
Q 039790 218 LVLGRQIAV-NRNYICYG-LKLGNIRILNIITALRSLLRGH----TQRVTDMAF------FAEDVHLLASASVDG-R--- 281 (1395)
Q Consensus 218 ~V~~va~Sp-dg~~LasG-s~DG~IrIWd~~~~~~~~l~~H----~~~V~slaf------~s~dg~~LaSgs~Dg-t--- 281 (1395)
...+++|+| ++..|+.+ ...+.|+++|..++.+..+..- ......|+| ...++++|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 34445444 4447799999999876655432 235788888 235666555555443 2
Q ss_pred ---EEEEECCC-CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCC------CCccc
Q 039790 282 ---FFIWNITE-GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNR------VGKGE 350 (1395)
Q Consensus 282 ---V~IWdl~t-g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~------~~~~~ 350 (1395)
|.+++... +... .. .... .+..+. ....++++|+++.|+++... +.+.+++... .+.
T Consensus 220 ~~~V~~i~r~~~G~~~-~~--~~~~---~v~~~~----~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~-- 287 (496)
T 3kya_A 220 SPSVYIIKRNADGTFD-DR--SDIQ---LIAAYK----QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG-- 287 (496)
T ss_dssp EEEEEEEECCTTSCCS-TT--SCEE---EEEEES----CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC--
T ss_pred CceEEEEecCCCCcee-ec--ccce---eeccCC----CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce--
Confidence 66666433 2210 00 0001 111111 23467889988788877754 5588887641 111
Q ss_pred cccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCce--eEEecCC---CC---
Q 039790 351 RFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD--RKSTP--LAVLRPY---DG--- 420 (1395)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl--~sg~~--l~tl~~h---~~--- 420 (1395)
.|.+..+..+ .....+... +.....+.|+|+|+|..++++-+..+.|+.+|. ..+.. ..++-+. .+
T Consensus 288 ~~tp~~~~~~---g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~D 363 (496)
T 3kya_A 288 SWDPIVKNNP---NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRD 363 (496)
T ss_dssp CCCCBGGGCT---TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBC
T ss_pred eecccccccc---cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccC
Confidence 0000000000 000111111 233456899999999324555556778988654 33322 1233221 11
Q ss_pred --------CCeeEEEEeecCC----CCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcc-------
Q 039790 421 --------HPVNCVTFLIGPH----PQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSA------- 481 (1395)
Q Consensus 421 --------~~V~sV~fs~~~~----pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~------- 481 (1395)
.......+...+. .+|. |+.+-..++.|+.++. ++ .+.++-+....
T Consensus 364 G~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~-~G-------------~v~TiaG~g~~~~~~~~~ 428 (496)
T 3kya_A 364 DVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP-EG-------------IVSTYAGRGASTSLADGN 428 (496)
T ss_dssp CBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEECT-TC-------------BEEEEEESCTTHHHHHSC
T ss_pred CcccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEEEeC-CC-------------CEEEEecccccccccCcc
Confidence 0233233320000 1344 4444557889999983 33 24455443211
Q ss_pred ----ccc--ccccc--cceEEEEeCC-CCEEEEEeCCCeEEEEEcCC
Q 039790 482 ----ELR--LEDAF--FNQVVALNRA-GLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 482 ----i~~--~~~~~--~~~~l~~S~d-g~~LaSgs~Dg~I~iWdl~~ 519 (1395)
... ..... .-..++++++ |.++++-..++.|+.++++.
T Consensus 429 ~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 429 QWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp SCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred ccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 000 00011 2346888886 88889888899999999875
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.34 E-value=0.16 Score=58.17 Aligned_cols=169 Identities=11% Similarity=0.110 Sum_probs=102.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEE-cCCeEEEEECCCCceE--Eecc----CCC--CeEEEEEe--eCCCCEEEEEE-----
Q 039790 214 SDPGLVLGRQIAVNRNYICYGL-KLGNIRILNIITALRS--LLRG----HTQ--RVTDMAFF--AEDVHLLASAS----- 277 (1395)
Q Consensus 214 ~h~~~V~~va~Spdg~~LasGs-~DG~IrIWd~~~~~~~--~l~~----H~~--~V~slaf~--s~dg~~LaSgs----- 277 (1395)
...-.-.|..|......|..++ ..|+|..||...+... .+.+ ... .+..|.|. .+++.++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3334445778988555555554 7999999999866322 2222 111 35788883 35677777544
Q ss_pred --------CCCcEEEEECC---CCCCCCCCcccccceEEEEEEecC----------CCCCccEEEEeCCCCeEEEEEeC-
Q 039790 278 --------VDGRFFIWNIT---EGPDEEDKPQILGKIVVAIQILAD----------GDSVHPRVCWHPHKQEILMLAIG- 335 (1395)
Q Consensus 278 --------~DgtV~IWdl~---tg~~~~~~~~~~~~~i~~l~~~~~----------~~~~v~~v~~sp~~~~lla~g~~- 335 (1395)
.+..|..||+. +++.. ..+.+... .-.....++..++|+.+++.+..
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~-----------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~ 158 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPV-----------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM 158 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCS-----------EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEE-----------EEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence 26779999999 66521 11111100 11235678999999877777778
Q ss_pred CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 039790 336 NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS 409 (1395)
Q Consensus 336 ~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg 409 (1395)
+.|++++.... ....| .+..+ ........+.|+++|+| ++|+....+|.|..+|+...
T Consensus 159 ~~I~rV~pdG~-~~~~~-----------~~~~~---~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 159 PAIARVSADGK-TVSTF-----------AWESG---NGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CEEEEECTTSC-CEEEE-----------EECCC---CSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSS
T ss_pred CeEEEEeCCCC-EEeee-----------eecCC---CcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCC
Confidence 88888876432 11111 00000 01122346789999999 66666655999999998854
No 304
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.27 E-value=1 Score=52.29 Aligned_cols=121 Identities=11% Similarity=0.133 Sum_probs=64.8
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEe-------ccCCCCeEEEEEeeCC----CCEEEEEEC-------
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLL-------RGHTQRVTDMAFFAED----VHLLASASV------- 278 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l-------~~H~~~V~slaf~s~d----g~~LaSgs~------- 278 (1395)
...++++|.++|++|.++...|.|++++........+ ....+....|+| +++ +.+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~-~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVL-APDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEE-CTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEE-CCCCCCCCEEEEEEeCCCCCCCc
Confidence 4567899999999344556779999998643221111 112345789999 664 544444333
Q ss_pred CCcEEEEECCCCCCCCCCcccccceEEEEEEec---CCCCCccEEEEeCCCCeEEEEEeC-------------CeEEEEE
Q 039790 279 DGRFFIWNITEGPDEEDKPQILGKIVVAIQILA---DGDSVHPRVCWHPHKQEILMLAIG-------------NRILKID 342 (1395)
Q Consensus 279 DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~---~~~~~v~~v~~sp~~~~lla~g~~-------------~~ii~~d 342 (1395)
...|..|++..+... .. .....+.... ........+.|.|++..+++.+.. ++|++++
T Consensus 97 ~~~v~r~~~~~~~~~-----~~-~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSK-----VT-DFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp EEEEEEEEECTTSSB-----EE-EEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred eeEEEEEEECCCCCC-----CC-ceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 235666666543200 00 0000111111 111223579999999544444332 4688887
Q ss_pred cC
Q 039790 343 SN 344 (1395)
Q Consensus 343 ~~ 344 (1395)
..
T Consensus 171 ~d 172 (353)
T 2g8s_A 171 DQ 172 (353)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.21 E-value=3.4 Score=51.90 Aligned_cols=187 Identities=8% Similarity=-0.041 Sum_probs=109.3
Q ss_pred EEEEEEcCCeEEEEECCCCce--EEec-cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEE
Q 039790 230 YICYGLKLGNIRILNIITALR--SLLR-GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVA 306 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~--~~l~-~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~ 306 (1395)
+|+.+. .+.|+..++..... ..+. ..-..+..|+|...++.++++-...+.|+.+++.....
T Consensus 319 ~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-------------- 383 (619)
T 3s94_A 319 LLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-------------- 383 (619)
T ss_dssp EEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------
T ss_pred EEEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc--------------
Confidence 455544 35677778776531 1111 12245788999434555565655678899999875430
Q ss_pred EEEecCCCCCccEEEEeCCCCeEEEEEeC-CeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe
Q 039790 307 IQILADGDSVHPRVCWHPHKQEILMLAIG-NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC 385 (1395)
Q Consensus 307 l~~~~~~~~~v~~v~~sp~~~~lla~g~~-~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs 385 (1395)
..+....-.....+++...++.++.+-.. +.|.+.+...... ..++...-....+|++.
T Consensus 384 ~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~--------------------~~l~~~~l~~P~~iavd 443 (619)
T 3s94_A 384 QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR--------------------KILISEDLEEPRAIVLD 443 (619)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEECTTCCSEEEEEEE
T ss_pred EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--------------------EEEEECCCCCeeeEEEE
Confidence 11222223445678888877777777654 4454444322110 12222234568899999
Q ss_pred cCCCcEEEEEeC-CCcEEEEeCCCCceeEEe-cCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 386 QWLTTRLASASL-DGTVKIWDDRKSTPLAVL-RPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 386 pdg~~~LaSgs~-Dg~IrIWDl~sg~~l~tl-~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
|..+.++++-.. .+.|...++. |.....+ ...-. +.+.|+++ +++..|..+-...+.|..+++...
T Consensus 444 p~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~-~P~GlalD----~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 444 PMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLG-WPNGLALD----YDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp TTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCS-CEEEEEEE----TTTTEEEEEETTTTEEEEEESSSC
T ss_pred cCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCC-CCeeeEEc----ccCCEEEEEECCCCEEEEEecCCC
Confidence 975355555322 3567766654 3333333 22233 78999998 777777776667788999988543
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.89 E-value=0.94 Score=52.36 Aligned_cols=131 Identities=7% Similarity=0.072 Sum_probs=76.3
Q ss_pred CCeEEEEE--ecCCC-cEEEEEeCCCcEEEEeCC-------CCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC
Q 039790 377 GEITELSM--CQWLT-TRLASASLDGTVKIWDDR-------KSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN 446 (1395)
Q Consensus 377 ~~V~slaf--spdg~-~~LaSgs~Dg~IrIWDl~-------sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D 446 (1395)
..++.+|+ ++.++ .+++....+|.+..|++. +++.+++|.... .+..|... +....|+.+- +|
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvD----d~~g~Lyv~e-Ed 200 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAAD----DEYGRLYIAE-ED 200 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEE----TTTTEEEEEE-TT
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEc----CCCCeEEEec-cc
Confidence 45666777 66543 368888889999999883 346778887553 58888887 7777787755 77
Q ss_pred CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEE--eCCCC-EE-EEEeCCCeEEEEEcCCCCC
Q 039790 447 RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVAL--NRAGL-FL-LANAKKNAIYAIHMDYGPN 522 (1395)
Q Consensus 447 g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~--S~dg~-~L-aSgs~Dg~I~iWdl~~g~~ 522 (1395)
.-|..||..-. .....+.+..+.. ...... ...+++ .++|. +| +++-.++++.+||...
T Consensus 201 ~GIw~~da~p~-------~~~~~~~v~~~~~-g~l~aD------vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~--- 263 (355)
T 3amr_A 201 EAIWKFSAEPD-------GGSNGTVIDRADG-RHLTRD------IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG--- 263 (355)
T ss_dssp TEEEEEECSTT-------SCSCCEEEEEBSS-SSBCSC------EEEEEEEECGGGCEEEEEEEGGGTEEEEEESST---
T ss_pred ceEEEEeCCcC-------CCCCceEEEEecC-CccccC------cceEEEEecCCCCEEEEEEcCCCCEEEEEECCC---
Confidence 55544453311 0012245544421 111000 123444 55555 44 4444778999999852
Q ss_pred CCCcceeeeeeee
Q 039790 523 PASTRMDYIAEFT 535 (1395)
Q Consensus 523 ~~~~~~~~i~~f~ 535 (1395)
...++..|.
T Consensus 264 ----~~~~vg~f~ 272 (355)
T 3amr_A 264 ----KNKYVADFR 272 (355)
T ss_dssp ----TCCEEEEEE
T ss_pred ----CCcEEEEEE
Confidence 233666664
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.78 E-value=6.5 Score=53.04 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=81.3
Q ss_pred CeEEEE---EecCCCcEEEEEe----------CCCcEEEEeCCCCceeEEec-CCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 378 EITELS---MCQWLTTRLASAS----------LDGTVKIWDDRKSTPLAVLR-PYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 378 ~V~sla---fspdg~~~LaSgs----------~Dg~IrIWDl~sg~~l~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.+.|++ |..+...+|+.|. ..|.|.+|++..++.....+ ..++ .|++|+-- +|+.|++
T Consensus 830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g-~v~al~~~-----~g~Lla~-- 901 (1158)
T 3ei3_A 830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG-AVYSMVEF-----NGKLLAS-- 901 (1158)
T ss_dssp EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS-CEEEEEEE-----TTEEEEE--
T ss_pred ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC-cCEEEeee-----CCEEEEE--
Confidence 345554 3333336888887 34789999987553222221 2245 89999864 5654443
Q ss_pred cCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCCCC
Q 039790 444 PLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNP 523 (1395)
Q Consensus 444 s~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~~~ 523 (1395)
..++|+||++... +.++ ..... ...+ ..+.....|.+++.|..-..|.++.+...
T Consensus 902 -ig~~l~vy~l~~~------------~~L~-~~~~~-------~~~i-~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~--- 956 (1158)
T 3ei3_A 902 -INSTVRLYEWTTE------------KELR-TECNH-------YNNI-MALYLKTKGDFILVGDLMRSVLLLAYKPM--- 956 (1158)
T ss_dssp -ETTEEEEEEECTT------------SCEE-EEEEE-------CCCS-CEEEEEEETTEEEEEESSBCEEEEEEETT---
T ss_pred -cCCEEEEEECCCC------------ceEE-EEeec-------cccE-EEEEEeccCCEEEEEEhhheEEEEEEEcC---
Confidence 3589999999764 2222 11100 0001 12344445788888888888888877542
Q ss_pred CCcceeeeeeeeccccEEEEecCCCCcC--cCCCCeEEEEEcCC
Q 039790 524 ASTRMDYIAEFTVTMPILSLTGTTTDAS--PDGEHIVQIYCVQT 565 (1395)
Q Consensus 524 ~~~~~~~i~~f~~~~~ils~~~~~~d~~--~s~dg~V~lWdv~t 565 (1395)
..++..++.-.....+.+......+.+ ++.+|.|.++....
T Consensus 957 -~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 957 -EGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp -TTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred -CCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 224444443323333333332211212 34556666665443
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.50 E-value=2 Score=49.91 Aligned_cols=105 Identities=9% Similarity=0.111 Sum_probs=66.0
Q ss_pred CCeEEEEEecCCCcEEEEEeC-----------------CCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 377 GEITELSMCQWLTTRLASASL-----------------DGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~-----------------Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
...+++++.++| .++++... .|.|.-||. +++.....+-. ..+.++|+ ||+++|
T Consensus 165 ~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~--~pNGia~s----pDg~~l 235 (355)
T 3sre_A 165 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFD--FANGINIS----PDGKYV 235 (355)
T ss_dssp SSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEES--SEEEEEEC----TTSSEE
T ss_pred CCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCc--ccCcceEC----CCCCEE
Confidence 468999999998 66666541 244555554 33332333322 57899999 999998
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC-CCCEEEEEeCC
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR-AGLFLLANAKK 509 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~-dg~~LaSgs~D 509 (1395)
..+.+..+.|..||+... ......+.+... . ....+++.. +|++.+++..+
T Consensus 236 Yvadt~~~~I~~~~~~~~---------g~l~~~~~~~~~-g---------~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHAN---------WTLTPLRVLSFD-T---------LVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEGGGTEEEEEEECTT---------SCEEEEEEEECS-S---------EEEEEEECTTTCCEEEEEESC
T ss_pred EEEeCCCCeEEEEEECCC---------CcEecCEEEeCC-C---------CCceEEEeCCCCcEEEEecCC
Confidence 888778899999998642 111222334221 1 123588888 59888766543
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.47 E-value=1 Score=50.57 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=37.0
Q ss_pred CCCEEEEEE-cC-----CeEEEEECCCCceEEeccC---CCCeEEEEEeeCCCCEEEEEECC-----CcEEEEECCCCC
Q 039790 227 NRNYICYGL-KL-----GNIRILNIITALRSLLRGH---TQRVTDMAFFAEDVHLLASASVD-----GRFFIWNITEGP 291 (1395)
Q Consensus 227 dg~~LasGs-~D-----G~IrIWd~~~~~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~D-----gtV~IWdl~tg~ 291 (1395)
++.+++.|+ .+ ..+.+||..++.-..+..- ......+. .++.+++.|+.+ ..+.+||+.++.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS---LHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE---ETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE---ECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 455666666 32 4688999888753333211 11122222 367788888765 358999988765
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.36 E-value=1 Score=50.51 Aligned_cols=63 Identities=8% Similarity=0.100 Sum_probs=35.5
Q ss_pred CCCEEEEEEcC----CeEEEEECCCCceEEeccCCC-C-eEEEEEeeCCCCEEEEEECCC-----cEEEEECCCCC
Q 039790 227 NRNYICYGLKL----GNIRILNIITALRSLLRGHTQ-R-VTDMAFFAEDVHLLASASVDG-----RFFIWNITEGP 291 (1395)
Q Consensus 227 dg~~LasGs~D----G~IrIWd~~~~~~~~l~~H~~-~-V~slaf~s~dg~~LaSgs~Dg-----tV~IWdl~tg~ 291 (1395)
++.+++.|+.+ ..+.+||..+..-..+..-.. + -.+++. .++.+++.||.++ .+.+||..+..
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 88 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQ 88 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCc
Confidence 34455666543 457888988875333321111 1 112222 2677788887653 58888888764
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.23 E-value=2 Score=49.85 Aligned_cols=240 Identities=13% Similarity=0.105 Sum_probs=116.7
Q ss_pred cCCCCCeeee--CceEEEEEeccCCCccCccccccee---eeeCCCCCEEEEEEecC---CCEEEEEEc-C-----CeEE
Q 039790 176 KVPKGRHLIG--NHSVYDIDVRLDGEVQPQLEVTPIT---KYISDPGLVLGRQIAVN---RNYICYGLK-L-----GNIR 241 (1395)
Q Consensus 176 ~sp~Gr~L~G--~~~v~~v~~~~~G~~~~~~~~~~i~---~l~~h~~~V~~va~Spd---g~~LasGs~-D-----G~Ir 241 (1395)
+.|+|+++.. ...|+.++ +|.. ..+. .+........+++|+++ +.+|..+.. + +.|.
T Consensus 38 ~~pdG~l~V~e~~g~I~~i~---~g~~------~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 38 FLPDGGMLIAERPGRIRLFR---EGRL------STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp ECTTSCEEEEETTTEEEEEE---TTEE------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred EcCCCeEEEEeCCCeEEEEE---CCCc------cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4577776622 35666665 3321 1111 12223457889999998 555544432 2 5677
Q ss_pred EEECCCCc----eEE---ec---cCCCCeEEEEEeeCCCCEEEEEECC-------------CcEEEEECCCCCCCCCCcc
Q 039790 242 ILNIITAL----RSL---LR---GHTQRVTDMAFFAEDVHLLASASVD-------------GRFFIWNITEGPDEEDKPQ 298 (1395)
Q Consensus 242 IWd~~~~~----~~~---l~---~H~~~V~slaf~s~dg~~LaSgs~D-------------gtV~IWdl~tg~~~~~~~~ 298 (1395)
.|+...+. ... +. +.......|+| .++|.++++.+.. |.|.-++... ..-...+.
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~-~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf 186 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAF-GPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPF 186 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEE-CTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEE-CCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcc
Confidence 88876531 111 22 11123468999 8899877765432 4555555442 10000000
Q ss_pred c----ccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCe---------EEEEEcCCCCccccccCCCCCccCcccc
Q 039790 299 I----LGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNR---------ILKIDSNRVGKGERFSAEEPLKCPVDEL 365 (1395)
Q Consensus 299 ~----~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~---------ii~~d~~~~~~~~~~s~~~~~~~~~~~~ 365 (1395)
. ....+ +...-.....++|+++.+.++++-.+.. +.++.. +....|..-.. .+.....
T Consensus 187 ~~~~~~~~~i-----~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~---G~nyGwp~~~g-~~~~~~~ 257 (352)
T 2ism_A 187 LGRRGARPEV-----YSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP---GGNYGWPRVVG-RGNDPRY 257 (352)
T ss_dssp TTCTTSCTTE-----EEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT---TCBCCTTTCCS-CCCCTTS
T ss_pred cCCCCCCccE-----EEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc---CCcCCCCcccC-CCCCCCC
Confidence 0 00001 1111122457899996556776655433 333321 11111100000 0000011
Q ss_pred ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce------eEEecCCCCCCeeEEEEeecCCCCCcEE
Q 039790 366 INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTP------LAVLRPYDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 366 ~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~------l~tl~~h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
..+...+. +......++| .+| .++++.-..+.|...++..... ...+-...+ .+..|++. |||..+
T Consensus 258 ~~p~~~~~-~~~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~-rp~~v~~~----pdG~ly 329 (352)
T 2ism_A 258 RDPLYFWP-QGFPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFG-RLREVQVG----PDGALY 329 (352)
T ss_dssp CCCSEECT-TCCCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSC-CEEEEEEC----TTSCEE
T ss_pred cCCeEecC-CCCCCcceEE-ECC-EEEEEECCCCEEEEEEECCCCcceeecchheecccCC-CeeEEEEC----CCCcEE
Confidence 22333343 3345678888 345 6777666677788777654321 122222223 78999998 999877
Q ss_pred EEEe
Q 039790 440 ITGG 443 (1395)
Q Consensus 440 ~s~G 443 (1395)
++..
T Consensus 330 v~~~ 333 (352)
T 2ism_A 330 VTTS 333 (352)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7654
No 312
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.13 E-value=0.55 Score=53.80 Aligned_cols=174 Identities=9% Similarity=0.092 Sum_probs=99.8
Q ss_pred cCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC----C--CCCccEEEE---eCC
Q 039790 255 GHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD----G--DSVHPRVCW---HPH 325 (1395)
Q Consensus 255 ~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~----~--~~~v~~v~~---sp~ 325 (1395)
.....--+++|+..++.++++.-..|+|..||...+.. ..+ .+.+ . ......+.| .++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~------------~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~ 76 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH------------FNV-VIDGASSNGDGEQQMSGLSLLTHDNS 76 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE------------EEE-CCTTTCCSSCCSEEEEEEEESSSSSC
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE------------EEE-ecCCccccCCCcceeeEEEEeccCCC
Confidence 33344557889444555555555799999999975541 111 1211 1 112357888 577
Q ss_pred CCeEEEEEe--------------CCeEEEEEcCC--CCccccccCCCCCccCccccccceEEEcccC-CCeEEEEEecCC
Q 039790 326 KQEILMLAI--------------GNRILKIDSNR--VGKGERFSAEEPLKCPVDELINGVQLVGKHD-GEITELSMCQWL 388 (1395)
Q Consensus 326 ~~~lla~g~--------------~~~ii~~d~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~-~~V~slafspdg 388 (1395)
+.++++.. ...++++|..- .++. .| ...+.....+.+...+.. ....+++..++|
T Consensus 77 -grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~-~~------~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G 148 (334)
T 2p9w_A 77 -KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP-VW------SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG 148 (334)
T ss_dssp -CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC-SE------EEESHHHHHHHHHHHSSCCEEEEEEEECTTS
T ss_pred -CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE-EE------EecCccccccccccccccccCCceeEECCCC
Confidence 45655444 45677777641 1110 00 000000000000000111 248899999998
Q ss_pred CcEEEEEeCC-CcEEEEeCCCCceeEEec-----CCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 389 TTRLASASLD-GTVKIWDDRKSTPLAVLR-----PYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 389 ~~~LaSgs~D-g~IrIWDl~sg~~l~tl~-----~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+..++++.. +.|..+|.. |+.+..+. .+.....+.++|. |+|..|++..+ +|.|..+|+..
T Consensus 149 -naYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~----pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 149 -NSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFD----PHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp -CEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEE----TTTTEEEEESS-SSSEEEEECSS
T ss_pred -CEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEe----CCCCEEEEEcC-CCeEEEEcCCC
Confidence 888888888 887777754 33333332 1112247799998 99999999885 99999999874
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.42 E-value=3.9 Score=47.47 Aligned_cols=209 Identities=12% Similarity=0.096 Sum_probs=105.0
Q ss_pred CCCEEEEEEecC---CCEEEEEEc----C----CeEEEEECCCC------ceEE---ec-cCCCCeEEEEEeeCCCCEEE
Q 039790 216 PGLVLGRQIAVN---RNYICYGLK----L----GNIRILNIITA------LRSL---LR-GHTQRVTDMAFFAEDVHLLA 274 (1395)
Q Consensus 216 ~~~V~~va~Spd---g~~LasGs~----D----G~IrIWd~~~~------~~~~---l~-~H~~~V~slaf~s~dg~~La 274 (1395)
.....+++|+|+ +.+|..+.. + +.|..|+...+ .... +. +.......|+| .+||.+++
T Consensus 72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~-~pDG~Lyv 150 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRF-GPDGMLYI 150 (354)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEE-CTTSCEEE
T ss_pred CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEE-CCCCcEEE
Confidence 356889999997 444544432 3 56777776654 1111 21 11123467999 88998777
Q ss_pred EEECC-------------CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCC----e
Q 039790 275 SASVD-------------GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGN----R 337 (1395)
Q Consensus 275 Sgs~D-------------gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~----~ 337 (1395)
+.+.. |.|.-++.. +..-...+ .... .++...-.....++|+++.+.++++-.+. .
T Consensus 151 t~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np-f~~~-----~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~de 223 (354)
T 3a9g_A 151 TTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP-FPNS-----PIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDE 223 (354)
T ss_dssp ECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS-STTC-----CEEEECCSCCCEEEECTTTCCEEEEECCSSSCCE
T ss_pred EECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC-CCCC-----cEEEEccCCcceEEEeCCCCCEEEEecCCCCCcE
Confidence 75432 344444443 21000000 0000 11111223345899999655677665542 3
Q ss_pred EEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEe-------cCCCcEEEEEeCCCcEEEEeCCCC-
Q 039790 338 ILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC-------QWLTTRLASASLDGTVKIWDDRKS- 409 (1395)
Q Consensus 338 ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs-------pdg~~~LaSgs~Dg~IrIWDl~sg- 409 (1395)
+.++.. +....|..-... +.......++..+.........++|. .+| .++++.-..+.|...++...
T Consensus 224 i~~i~~---G~nyGwp~~~g~-~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g 298 (354)
T 3a9g_A 224 VNIILK---GGNYGWPLATGK-AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNM 298 (354)
T ss_dssp EEEECT---TCBCCTTTCCSC-CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGG
T ss_pred EEEecC---CCcCCCCcccCC-CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCC
Confidence 444422 111111100000 00001112233332223467888883 445 67777667788888887753
Q ss_pred cee--EEec-CCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 410 TPL--AVLR-PYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 410 ~~l--~tl~-~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
... ..+. +... .+..|++. |||.++++.
T Consensus 299 ~~~~~~~~~~~~~~-rp~~v~~~----pDG~lyv~~ 329 (354)
T 3a9g_A 299 EVRKISTFFKNVFG-RLRDVVID----DDGGILIST 329 (354)
T ss_dssp CEEEEEEECTTTSC-CEEEEEEC----TTSCEEEEE
T ss_pred cccceeeeccCCCC-CeeEEEEC----CCCcEEEEE
Confidence 322 2332 2223 78999998 999766664
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.25 E-value=3.6 Score=46.12 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=35.6
Q ss_pred CEEEEEEc--CCeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECC----CcEEEEECCCCC
Q 039790 229 NYICYGLK--LGNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVD----GRFFIWNITEGP 291 (1395)
Q Consensus 229 ~~LasGs~--DG~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~D----gtV~IWdl~tg~ 291 (1395)
.+++.|+. ...+.+||..++.-..+.. .......+.+ ++.+++.||.+ ..+.+||+.++.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 34555654 3578899998875333321 1111222233 67778888765 568889988765
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.02 E-value=2.1 Score=48.20 Aligned_cols=65 Identities=14% Similarity=-0.034 Sum_probs=37.6
Q ss_pred ecCCCEEEEEEcC----CeEEEEECCCCceEEeccCCC--CeEEEEEeeCCCCEEEEEEC----C-----CcEEEEECCC
Q 039790 225 AVNRNYICYGLKL----GNIRILNIITALRSLLRGHTQ--RVTDMAFFAEDVHLLASASV----D-----GRFFIWNITE 289 (1395)
Q Consensus 225 Spdg~~LasGs~D----G~IrIWd~~~~~~~~l~~H~~--~V~slaf~s~dg~~LaSgs~----D-----gtV~IWdl~t 289 (1395)
..++.+++.|+.+ ..+.+||..++.-..+..-.. .-.+++. .++.+++.||. + ..+.+||+.+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3456677777642 468899988875433321111 1112222 26677777775 2 3588899887
Q ss_pred CC
Q 039790 290 GP 291 (1395)
Q Consensus 290 g~ 291 (1395)
..
T Consensus 100 ~~ 101 (308)
T 1zgk_A 100 NQ 101 (308)
T ss_dssp TE
T ss_pred Ce
Confidence 65
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.89 E-value=11 Score=43.52 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=44.6
Q ss_pred ceEEEcccCCCeEEEEEec-------CCCcEEEEEeCCCcEEEEeCCCCceeEE--e-cCCCCCCeeEEEEeecCCCCCc
Q 039790 368 GVQLVGKHDGEITELSMCQ-------WLTTRLASASLDGTVKIWDDRKSTPLAV--L-RPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 368 ~~~~l~~h~~~V~slafsp-------dg~~~LaSgs~Dg~IrIWDl~sg~~l~t--l-~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
+...+. +...+..++|.. +| .+|++.-..+.|...++..+..+.. + ..... .+..|++. |||.
T Consensus 263 P~~~~~-~~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-rp~~v~~~----pdG~ 335 (353)
T 2g8s_A 263 PVFYWK-DSPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQ-RIRDVRTG----PDGY 335 (353)
T ss_dssp CSEEES-SCCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCC-CEEEEEEC----TTSC
T ss_pred CeEEeC-CCcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCC-ceeEEEEC----CCCc
Confidence 344444 345678888864 34 6777777778888888776644332 2 22223 78999998 9998
Q ss_pred EEEEE
Q 039790 438 VLITG 442 (1395)
Q Consensus 438 ~L~s~ 442 (1395)
++++.
T Consensus 336 lyv~t 340 (353)
T 2g8s_A 336 LYVLT 340 (353)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77653
No 317
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.82 E-value=9.1 Score=43.66 Aligned_cols=74 Identities=8% Similarity=-0.023 Sum_probs=52.7
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.+.-.++..++.. ..+..-++-|.|.+||+.+|.++..-+--.. .|..-+.. ....-++... ..|.|.--.++
T Consensus 259 ~DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt~i~~nrIS~d-~iF~ta~~----~~~~Gi~~Vn-r~GqVl~v~v~ 331 (365)
T 2xzh_A 259 NDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPH----EATAGIIGVN-RKGQVLSVCVE 331 (365)
T ss_dssp TCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE----GGGTEEEEEE-TTCEEEEEEEC
T ss_pred CCceEEEEecccC-CEEEEEeCCcEEEEEEcccCcEEEEeccCCC-ceEEeccc----CCCCcEEEEc-CCCEEEEEEEC
Confidence 4556677778776 5788888999999999999999988775554 67666654 3444455556 77877666555
Q ss_pred C
Q 039790 456 E 456 (1395)
Q Consensus 456 t 456 (1395)
.
T Consensus 332 ~ 332 (365)
T 2xzh_A 332 E 332 (365)
T ss_dssp T
T ss_pred c
Confidence 4
No 318
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=93.76 E-value=10 Score=42.12 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 039790 1167 STFQKGLIKHTTAIQQQFETAH 1188 (1395)
Q Consensus 1167 ~~~~~~~~e~~~~~q~~~~~~~ 1188 (1395)
+.+++.+.++..+++++++..+
T Consensus 201 e~l~~~l~~~~~~~~qq~e~f~ 222 (273)
T 3s84_A 201 EGLQKSLAELGGHLDQQVEEFR 222 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3445555555566666666655
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.34 E-value=3.7 Score=45.82 Aligned_cols=64 Identities=8% Similarity=0.020 Sum_probs=38.5
Q ss_pred cCCCEEEEEEcC-----CeEEEEECCCCc---eEEeccC--CCCeEEEEEeeCCCCEEEEEECCC-----cEEEEECCCC
Q 039790 226 VNRNYICYGLKL-----GNIRILNIITAL---RSLLRGH--TQRVTDMAFFAEDVHLLASASVDG-----RFFIWNITEG 290 (1395)
Q Consensus 226 pdg~~LasGs~D-----G~IrIWd~~~~~---~~~l~~H--~~~V~slaf~s~dg~~LaSgs~Dg-----tV~IWdl~tg 290 (1395)
.++++++.|+.+ ..+.+||..++. -..+..- ...-.+++. .++.+++.|+.++ .+.+||+.+.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCC
Confidence 467777888765 468899988765 3333221 111112222 2677777777543 5888888775
Q ss_pred C
Q 039790 291 P 291 (1395)
Q Consensus 291 ~ 291 (1395)
.
T Consensus 139 ~ 139 (301)
T 2vpj_A 139 Q 139 (301)
T ss_dssp E
T ss_pred e
Confidence 4
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.28 E-value=10 Score=42.64 Aligned_cols=59 Identities=5% Similarity=0.053 Sum_probs=34.0
Q ss_pred EEEEEEcCCeEEEEECCCCceE--EeccCCCCeEEEEEeeCCCCEEEEEEC----C-------CcEEEEECCCCC
Q 039790 230 YICYGLKLGNIRILNIITALRS--LLRGHTQRVTDMAFFAEDVHLLASASV----D-------GRFFIWNITEGP 291 (1395)
Q Consensus 230 ~LasGs~DG~IrIWd~~~~~~~--~l~~H~~~V~slaf~s~dg~~LaSgs~----D-------gtV~IWdl~tg~ 291 (1395)
+++.|+ ..+.+||..++.-. .+.....+....+. ..++.+++.||. + ..+.+||..++.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLV-TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEE-CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEE-EECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 344555 57889999887532 22222223333333 457788888884 1 127788888765
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.88 E-value=3.7 Score=49.39 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=62.1
Q ss_pred CCCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEE---ecc------CCCCeEEEEEeeC----CCCEEEEEEC----
Q 039790 216 PGLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSL---LRG------HTQRVTDMAFFAE----DVHLLASASV---- 278 (1395)
Q Consensus 216 ~~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~---l~~------H~~~V~slaf~s~----dg~~LaSgs~---- 278 (1395)
-...++++|.++|+++++-...+.|++++..++.... +.. ..+....|+| .+ ++.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~-~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAF-HPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEE-CTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEE-CCCcCcCCEEEEEEeccccC
Confidence 3567799999999977765444578888876554322 221 2355779999 66 4444444432
Q ss_pred --------CCcEEEEECCCCCCCCCCcccccceEEEEEEe-cCCCCCccEEEEeCCCCeEEEEEe
Q 039790 279 --------DGRFFIWNITEGPDEEDKPQILGKIVVAIQIL-ADGDSVHPRVCWHPHKQEILMLAI 334 (1395)
Q Consensus 279 --------DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~-~~~~~~v~~v~~sp~~~~lla~g~ 334 (1395)
...|.-|++..+.. .. ......+..+ .........++|.+++..+++.|.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~-----~~-~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTD-----TL-EKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTT-----EE-EEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCC-----Cc-CCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 23455566543220 00 0011111111 122234568999999976666554
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.52 E-value=2.3 Score=50.23 Aligned_cols=163 Identities=10% Similarity=0.025 Sum_probs=85.9
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec-CCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCC
Q 039790 267 AEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA-DGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNR 345 (1395)
Q Consensus 267 s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~-~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~ 345 (1395)
..+|..|+.+- ++.||+-++..+. . ...+.+.. -....+..+..+|+|..++.. ....+.++..-.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~---~--------Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~ 95 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDS---L--------YHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPW 95 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCS---S--------CEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCT
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCC---c--------ceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecC
Confidence 44555555544 3577777776432 0 11122211 012256789999999755544 555666665542
Q ss_pred CCcccc-ccCCCCCccCccccccceEEEcccCCCeEEEEEecCCC--cEEEEEeCCCcEEEEeCCCC--ceeEEecC---
Q 039790 346 VGKGER-FSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT--TRLASASLDGTVKIWDDRKS--TPLAVLRP--- 417 (1395)
Q Consensus 346 ~~~~~~-~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~--~~LaSgs~Dg~IrIWDl~sg--~~l~tl~~--- 417 (1395)
...... ......+.|+.+.+.. . .......|..+.|+|.+. ..|++-..|+.||+||+... ++. .++.
T Consensus 96 ~~~~~~~~~~~~~~q~~ty~l~~-~--~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~ 171 (452)
T 3pbp_A 96 GYSNVEDVSIQDAFQIFHYSIDE-E--EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN 171 (452)
T ss_dssp TCSCCCCHHHHHTTEEEEEEGGG-C--C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred ccccCcccccccccceeEEEcCC-c--ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence 111000 0000111111111110 0 011356799999999873 38999999999999999863 333 3431
Q ss_pred ------CCCCCeeEEEEeecCCCCCcEEEEEe-cCCCeEEE
Q 039790 418 ------YDGHPVNCVTFLIGPHPQHIVLITGG-PLNRELKI 451 (1395)
Q Consensus 418 ------h~~~~V~sV~fs~~~~pdg~~L~s~G-s~Dg~I~I 451 (1395)
+. ..|.+++|. .+|-.|.... +.+|.|+-
T Consensus 172 ~fg~d~~~-~ev~S~~Fg----~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 172 SFGLDARV-NDITDLEFS----KDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEESCSSC-CCEEEEEEC----TTSSCEEEEECTTSCEEEE
T ss_pred ccCCCccc-ceEEEEEEc----CCCcEEEEEecCCCCCEEE
Confidence 12 368899997 5554444321 25566643
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.44 E-value=12 Score=44.16 Aligned_cols=74 Identities=8% Similarity=-0.023 Sum_probs=53.3
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 376 DGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 376 ~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.+.-.++..++.. ..+..-+.-|.|.+||+.+|.++..-+--.. .|..-+.. ....-++... ..|.|.--.++
T Consensus 258 ~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~----~~~~Gi~~Vn-r~GqVl~v~v~ 330 (494)
T 1bpo_A 258 NDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPH----EATAGIIGVN-RKGQVLSVCVE 330 (494)
T ss_dssp TCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE----TTTTEEEEEE-TTCEEEEEEEC
T ss_pred cCceeEEEecccC-CEEEEEecCceEEEEecccceeeeeecccCC-ceEEeccc----CCCCcEEEEc-cCceEEEEEEc
Confidence 4556678888876 5778888999999999999999988775544 67666665 4444455556 77877666655
Q ss_pred C
Q 039790 456 E 456 (1395)
Q Consensus 456 t 456 (1395)
.
T Consensus 331 e 331 (494)
T 1bpo_A 331 E 331 (494)
T ss_dssp T
T ss_pred c
Confidence 4
No 324
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=92.35 E-value=15 Score=40.76 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 039790 1207 QTLSGELADGQRKL 1220 (1395)
Q Consensus 1207 ~~~~~e~~~~~~~~ 1220 (1395)
.++..++.++++++
T Consensus 212 ~~~~qq~e~f~~~~ 225 (273)
T 3s84_A 212 GHLDQQVEEFRRRV 225 (273)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444443
No 325
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=92.26 E-value=4.2 Score=45.52 Aligned_cols=63 Identities=10% Similarity=0.055 Sum_probs=39.4
Q ss_pred cCCCEEEEEEcC----CeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECC------CcEEEEECCCCC
Q 039790 226 VNRNYICYGLKL----GNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVD------GRFFIWNITEGP 291 (1395)
Q Consensus 226 pdg~~LasGs~D----G~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~D------gtV~IWdl~tg~ 291 (1395)
.++.+++.|+.+ ..+.+||..++.-..+.. .......+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 467777888755 678899998874333221 1111222223 67788888765 458899988764
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.26 E-value=15 Score=41.29 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=33.7
Q ss_pred cEEEEEeCC------CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCC----CeEEEEECCCC
Q 039790 390 TRLASASLD------GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLN----RELKIWASAEE 457 (1395)
Q Consensus 390 ~~LaSgs~D------g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~D----g~I~IWDl~tg 457 (1395)
.+++.|+.+ ..+.+||+.+.+-...-.......-.+++.. ++..++.+|..+ ..+.+||+.+.
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-----KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-----TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-----CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 666776642 3589999887642221111111122233332 567777776322 35678888764
No 327
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.23 E-value=8.5 Score=43.51 Aligned_cols=211 Identities=9% Similarity=0.037 Sum_probs=112.6
Q ss_pred EecCCCEEEEEE--cCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECC--------------CcEEEEEC
Q 039790 224 IAVNRNYICYGL--KLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVD--------------GRFFIWNI 287 (1395)
Q Consensus 224 ~Spdg~~LasGs--~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~D--------------gtV~IWdl 287 (1395)
|+.+|.+|.... .++.|...+.+......+.... + .|..+++.+|+-+... +.|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~--~---~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT--A---MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE--E---EEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc--e---eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 456778887774 3567777777766555554321 2 3336788888877653 35677777
Q ss_pred CCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEE----eCCeEEEEEcCCCCccccccCCCCCccCcc
Q 039790 288 TEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLA----IGNRILKIDSNRVGKGERFSAEEPLKCPVD 363 (1395)
Q Consensus 288 ~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g----~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~ 363 (1395)
..+.. ..+... ....|+++++.|+.+. ....|.+++.....
T Consensus 96 dg~~~--------------~~l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---------------- 140 (302)
T 3s25_A 96 NGHGS--------------TVLDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE---------------- 140 (302)
T ss_dssp TSCCC--------------EEEECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC----------------
T ss_pred CCCcc--------------eEeecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC----------------
Confidence 65541 011111 1336777888777765 23345555543211
Q ss_pred ccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 364 ELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 364 ~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
...+..+.. .+|++++..+..+......|..-++..+.....+. + ... ..+. |++.+|+-+.
T Consensus 141 -----~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~-~~~-~~~~----P~g~~iy~t~ 202 (302)
T 3s25_A 141 -----KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C-NCY-KPVV----LDDTNVYYMD 202 (302)
T ss_dssp -----CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S-CEE-EEEE----EETTEEEEEE
T ss_pred -----eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C-Ccc-ceee----ecCCEEEEEE
Confidence 222322322 45677774444443335778888877665443333 2 233 3455 8888888765
Q ss_pred cCC-CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEe--CCCeEEEEEcC
Q 039790 444 PLN-RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANA--KKNAIYAIHMD 518 (1395)
Q Consensus 444 s~D-g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWdl~ 518 (1395)
..+ ..|..-++... . ...|.. .. ..+|+++|.+|..+. ..+.|+..+++
T Consensus 203 ~~~~~~I~~~~ldG~------------~-~~~Lt~--~~-----------~~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 203 VNRDNAIVHVNINNP------------N-PVVLTE--AN-----------IEHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp GGGTTEEEEECSSSC------------C-CEECSC--SC-----------EEEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred cCCCcEEEEEECCCC------------C-eEEEeC--CC-----------cceEEECCCEEEEEECCCCcEEEEEECC
Confidence 222 24444444433 1 122211 10 134677788777653 24566666664
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.20 E-value=20 Score=41.27 Aligned_cols=174 Identities=9% Similarity=0.009 Sum_probs=93.2
Q ss_pred eccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEE----EecCCCCCccEEEEeCC---
Q 039790 253 LRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQ----ILADGDSVHPRVCWHPH--- 325 (1395)
Q Consensus 253 l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~----~~~~~~~~v~~v~~sp~--- 325 (1395)
+...-..-+.|+| .++|.+|++--..|.|++++...+.. ..+. +..........|+++|+
T Consensus 27 va~gL~~P~~ia~-~pdG~llVter~~G~I~~v~~~~g~~------------~~v~~~~~v~~~g~~GllGia~~Pdf~~ 93 (347)
T 3das_A 27 VATGLNSPWGLAP-LPGGDLLVSSRDEATITRVDAKTGRK------------TELGEVPGVSPSGEGGLLGIALSPDYAS 93 (347)
T ss_dssp EECCCSSEEEEEE-CTTSCEEEEETTTCEEEEECTTTCCE------------EEEEECTTCCCBTTBSEEEEEECTTHHH
T ss_pred eecCCCCceEEEE-cCCCcEEEEEecCCEEEEEECCCCcE------------eeecccCceeecCCCCceeeEecccccc
Confidence 3333456789999 89999887776589999998665541 1111 11233455678999996
Q ss_pred CCeEEEEE---eCCeEEEEEcCCCCcc-ccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeC---
Q 039790 326 KQEILMLA---IGNRILKIDSNRVGKG-ERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASL--- 397 (1395)
Q Consensus 326 ~~~lla~g---~~~~ii~~d~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~--- 397 (1395)
++.++++- ..+.|.++........ ... .....-+..+. +.......|+|.||| .++++.+.
T Consensus 94 ~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~----------~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~ 162 (347)
T 3das_A 94 DHMVYAYFTSASDNRIVRMLYDEKKPSGEQL----------GAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGD 162 (347)
T ss_dssp HCEEEEEEECSSSEEEEEEEBCTTSCTTCCB----------CCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTC
T ss_pred CCEEEEEEecCCCCEEEEEEeCCCCcccccC----------CCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCC
Confidence 55666542 3567777765331100 000 00000011111 111235679999998 66665432
Q ss_pred ----------CCcEEEEeCCCC---------ceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCC
Q 039790 398 ----------DGTVKIWDDRKS---------TPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEE 457 (1395)
Q Consensus 398 ----------Dg~IrIWDl~sg---------~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg 457 (1395)
-|.|.-.+.... ..+.. .+|. ....++|. |+|.++++=-..|+-=.|--+..+
T Consensus 163 ~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~R--Np~Gla~d----p~G~L~~~d~g~~~~deln~i~~G 234 (347)
T 3das_A 163 TGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYS-YGHR--NVQGLAWD----DKQRLFASEFGQDTWDELNAIKPG 234 (347)
T ss_dssp GGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEE-BCCS--BCCEEEEC----TTCCEEEEECCSSSCEEEEEECTT
T ss_pred CccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEe-eCCC--CcceEEEC----CCCCEEEEecCCCCCceeeEEcCC
Confidence 244444444321 11222 2564 37889998 888766653324443444444444
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.83 E-value=13 Score=44.48 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=93.1
Q ss_pred CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEec------CCCCCccEEEEeCC---CC
Q 039790 257 TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILA------DGDSVHPRVCWHPH---KQ 327 (1395)
Q Consensus 257 ~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~------~~~~~v~~v~~sp~---~~ 327 (1395)
-..-+.|+| .++|+++++-...+.|++++..++.. ..+..+. ........|+|+|+ ++
T Consensus 26 l~~P~~~a~-~pdG~l~V~e~~gg~I~~~~~~~g~~------------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 26 LNKPHALLW-GPDNQIWLTERATGKILRVNPESGSV------------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp CSSEEEEEE-CTTSCEEEEETTTCEEEEECTTTCCE------------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred CCCceEEEE-cCCCcEEEEEcCCCEEEEEECCCCcE------------eEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence 345779999 89998777654445788887655541 1111111 12344568999996 66
Q ss_pred eEEEEEeC-------------CeEEEEEcCCCCccccccCCCCCccCccccccceEEEc-ccCCCeEEEEEecCCCcEEE
Q 039790 328 EILMLAIG-------------NRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG-KHDGEITELSMCQWLTTRLA 393 (1395)
Q Consensus 328 ~lla~g~~-------------~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~La 393 (1395)
.|+++... ..|.++........ + .....-+..+. ........|+|.+|| .+++
T Consensus 93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~--~----------~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv 159 (454)
T 1cru_A 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDT--L----------EKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYY 159 (454)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTE--E----------EEEEEEEEEECCCSSCCEEEEEECTTS-CEEE
T ss_pred EEEEEEeccccCCCccccccccEEEEEEECCCCCC--c----------CCcEEEEEcCCCCCCCCCCeEeECCCC-eEEE
Confidence 67666542 35666654321100 0 00000011111 112347899999999 5555
Q ss_pred EEeCC--------------------------------CcEEEEeCCCCc-----------eeE-EecCCCCCCeeEEEEe
Q 039790 394 SASLD--------------------------------GTVKIWDDRKST-----------PLA-VLRPYDGHPVNCVTFL 429 (1395)
Q Consensus 394 Sgs~D--------------------------------g~IrIWDl~sg~-----------~l~-tl~~h~~~~V~sV~fs 429 (1395)
+.+.. |.|.-+|.. |. ... --.+|. ....++|.
T Consensus 160 ~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~R--Np~gla~d 236 (454)
T 1cru_A 160 TIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHR--NPQGLAFT 236 (454)
T ss_dssp EECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCS--EEEEEEEC
T ss_pred EECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCC--CcceEEEC
Confidence 54321 333333432 22 111 123565 48899998
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECCCCCC
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASAEEEG 459 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~ 459 (1395)
++|.++++--..|+--.|.-+..+..
T Consensus 237 ----p~G~L~~~d~g~~~~dein~i~~G~n 262 (454)
T 1cru_A 237 ----PNGKLLQSEQGPNSDDEINLIVKGGN 262 (454)
T ss_dssp ----TTSCEEEEEECSSSCEEEEECCTTCB
T ss_pred ----CCCCEEEEecCCCCCeEEEEecCCCC
Confidence 88887666544666667777766643
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.68 E-value=26 Score=41.48 Aligned_cols=279 Identities=15% Similarity=0.187 Sum_probs=147.9
Q ss_pred EeecCCCCEEEEeCcCCCCCeeeeCceEEEEEeccCCCccCcccccceeeeeCCCCCEEEEEEecCCCEEEEEEcCCeEE
Q 039790 162 VVIPSAPPVRLRSSKVPKGRHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNIR 241 (1395)
Q Consensus 162 as~s~Dg~Vrlwd~~sp~Gr~L~G~~~v~~v~~~~~G~~~~~~~~~~i~~l~~h~~~V~~va~Spdg~~LasGs~DG~Ir 241 (1395)
+|-..|+.|++-+ ...+ ...|..++...+.. ..++--.-. +.-.+|..+.||.-. ..++.
T Consensus 30 ~TmESDkyicVrE-~~~~------~~~vvIiDl~~~~~--------~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQ 89 (494)
T 1bpo_A 30 LTMESDKFICIRE-KVGE------QAQVVIIDMNDPSN--------PIRRPISAD----SAIMNPASKVIALKA-GKTLQ 89 (494)
T ss_dssp EEEEETTEEEEEE-CCTT------CCEEEEEETTSTTS--------CEEEECCCS----EEEECSSSSCEEEEE-TTEEE
T ss_pred eeeecCceEEEEe-cCCC------CCeEEEEECCCCCc--------ceecccccc----eeeeCCCCcEEEEec-CCeEE
Confidence 4556678888777 2212 23455566543221 112111111 233577778777765 68999
Q ss_pred EEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCC----CCCc
Q 039790 242 ILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADG----DSVH 317 (1395)
Q Consensus 242 IWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~----~~~v 317 (1395)
|||+++.....-......|.-=.|.+++ .|+-.+ +..|+-|++.... ...+.+..| ...+
T Consensus 90 iFnle~K~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s-------------~P~kvFdR~~~L~~~QI 153 (494)
T 1bpo_A 90 IFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGES-------------QPVKMFDRHSSLAGCQI 153 (494)
T ss_dssp EEETTTTEEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSC-------------CCEEEEECCGGGTTCEE
T ss_pred EEchHHhhhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEecccCCC-------------CchhheecchhcccceE
Confidence 9999998533222234567777785443 444443 4589999997522 022333333 2334
Q ss_pred cEEEEeCCCCeEEEEEe---CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCC--CcEE
Q 039790 318 PRVCWHPHKQEILMLAI---GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWL--TTRL 392 (1395)
Q Consensus 318 ~~v~~sp~~~~lla~g~---~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg--~~~L 392 (1395)
.....+++..+++.+|- ++.+. |....|+.+... .+.+.||.+....+.+.-+. ..+|
T Consensus 154 InY~~d~~~kW~~l~GI~~~~~~v~-------G~mQLYS~er~~----------sQ~ieGhaa~F~~~~~~g~~~~~~lf 216 (494)
T 1bpo_A 154 INYRTDAKQKWLLLTGISAQQNRVV-------GAMQLYSVDRKV----------SQPIEGHAASFAQFKMEGNAEESTLF 216 (494)
T ss_dssp EEEEECTTSSEEEEEEEEEETTEEE-------EEEEEEESTTCC----------EEEECCSEEEEEEEECTTCSSEEEEE
T ss_pred EEEEECCCCCeEEEEeecccCCccc-------ceEEEeeccccc----------cchheeeeeeeEEEecCCCCCCceEE
Confidence 44556777888887775 22111 111222222211 46677776655444432111 1345
Q ss_pred EEEeCC---CcEEEEeCCCC---c------eeEEecCC--CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCC
Q 039790 393 ASASLD---GTVKIWDDRKS---T------PLAVLRPY--DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEE 458 (1395)
Q Consensus 393 aSgs~D---g~IrIWDl~sg---~------~l~tl~~h--~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~ 458 (1395)
+.+... +.+.|-++... . .+..+-.. .++-..++..+ +....+.... .-|.|++||+.++
T Consensus 217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs----~kygviyviT-K~G~i~lyDleTg- 290 (494)
T 1bpo_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS----EKHDVVFLIT-KYGYIHLYDLETG- 290 (494)
T ss_dssp EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE----TTTTEEEEEE-TTSEEEEEETTTC-
T ss_pred EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec----ccCCEEEEEe-cCceEEEEecccc-
Confidence 555543 78888888532 1 11111111 12255677777 4444444334 7899999999999
Q ss_pred CCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 459 GWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 459 ~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
.|+..-+.....+.. .+......=+++-..+|.|.-..++.
T Consensus 291 -----------t~i~~nrIs~~~iF~---------t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 291 -----------TCIYMNRISGETIFV---------TAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp -----------CEEEEEECCSSCEEE---------EEEETTTTEEEEEETTCEEEEEEECT
T ss_pred -----------eeeeeecccCCceEE---------ecccCCCCcEEEEccCceEEEEEEcc
Confidence 888776655443321 22233333333344777776666654
No 331
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.68 E-value=4.4 Score=45.29 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=38.1
Q ss_pred CCCEEEEEEcC-----CeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECCC-----cEEEEECCCCC
Q 039790 227 NRNYICYGLKL-----GNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVDG-----RFFIWNITEGP 291 (1395)
Q Consensus 227 dg~~LasGs~D-----G~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~Dg-----tV~IWdl~tg~ 291 (1395)
++++++.|+.+ ..+.+||..+..-..+.. .......+.+ ++.+++.|+.++ .+.+||+.+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 67777887754 358889988874333321 1111222223 677888887664 47788887754
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=90.63 E-value=27 Score=39.79 Aligned_cols=236 Identities=12% Similarity=0.144 Sum_probs=128.7
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccce
Q 039790 224 IAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKI 303 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~ 303 (1395)
.+|..+.||.-. ..++.|+|+++.....-......|.-=.|.+ .+.|+-.+. ..|+-|++....
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis--~~~L~lVT~-taVyHWs~~~~s------------ 137 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVTD-NAVYHWSMEGES------------ 137 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECS--SSEEEEEES-SEEEEEESSTTC------------
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecC--CCeEEEEcC-CcEEEEcccCCC------------
Confidence 578888888765 6899999999985432222345777777843 344544443 589999997532
Q ss_pred EEEEEEecCC----CCCccEEEEeCCCCeEEEEEe---CCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC
Q 039790 304 VVAIQILADG----DSVHPRVCWHPHKQEILMLAI---GNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD 376 (1395)
Q Consensus 304 i~~l~~~~~~----~~~v~~v~~sp~~~~lla~g~---~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~ 376 (1395)
...+.+..| ...+.....+++..+++.+|- ++.+. |....|+.+.. ..+.+.||.
T Consensus 138 -~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~-------G~mQLYS~er~----------~sQ~ieGha 199 (365)
T 2xzh_A 138 -QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV-------GAMQLYSVDRK----------VSQPIEGHA 199 (365)
T ss_dssp -CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEE-------EEEEEEETTTT----------EEEEECCSE
T ss_pred -CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccc-------eeEEEEeeccc----------ccceeeeee
Confidence 022333333 233444556777788877775 22111 11122222221 145667776
Q ss_pred CCeEEEEEecC--CCcEEEEEeCC---CcEEEEeCCCC---c------eeEEecCC--CCCCeeEEEEeecCCCCCcEEE
Q 039790 377 GEITELSMCQW--LTTRLASASLD---GTVKIWDDRKS---T------PLAVLRPY--DGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 377 ~~V~slafspd--g~~~LaSgs~D---g~IrIWDl~sg---~------~l~tl~~h--~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
+.-..+.+.-+ ...+|+.+... +.++|-++... . .+..+-.. .++-..++..+ .....+.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs----~kygviy 275 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS----EKHDVVF 275 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEE----TTTTEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEec----ccCCEEE
Confidence 54433332211 11244444432 57888887432 1 11111111 12255667776 3333333
Q ss_pred EEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 441 TGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 441 s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
... .-|.|++||+.++ .|+..-+.....+.. .+.....+-++. -..+|.|.-..++.
T Consensus 276 viT-K~G~ihlyDleTg------------t~i~~nrIS~d~iF~--------ta~~~~~~Gi~~-Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 276 LIT-KYGYIHLYDLETG------------TCIYMNRISGETIFV--------TAPHEATAGIIG-VNRKGQVLSVCVEE 332 (365)
T ss_dssp EEE-TTSEEEEEETTTC------------CEEEEEECCSSCEEE--------EEEEGGGTEEEE-EETTCEEEEEEECT
T ss_pred EEe-CCcEEEEEEcccC------------cEEEEeccCCCceEE--------ecccCCCCcEEE-EcCCCEEEEEEECc
Confidence 334 7899999999999 888877665544322 122233343443 34777777776665
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.98 E-value=51 Score=41.93 Aligned_cols=245 Identities=9% Similarity=0.004 Sum_probs=121.7
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccC------CCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGH------TQRVTDMAFFAEDVHLLASASVDGRFFIWNITEG 290 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H------~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg 290 (1395)
..|.++....+|.+.+ |+.+ -|..||..++....+... ...|.++.. ..++..|..|.. +-|..+|..++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLE-DTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEE-ETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEE-ECCCCEEEEEEC-CCCeEEcCCCC
Confidence 4678877777777554 5554 477888877654333211 234888877 555665444553 45888888765
Q ss_pred CCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE
Q 039790 291 PDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ 370 (1395)
Q Consensus 291 ~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 370 (1395)
.. ..+... ....+.+++...++. +.++. ++++.+++.... ....+..... . .
T Consensus 222 ~~------------~~~~~l--~~~~i~~i~~d~~g~-lWigT-~~Gl~~~~~~~~-~~~~~~~~~~---------~-~- 273 (758)
T 3ott_A 222 QI------------KQTEAF--HNNSIKSLALDGNGD-LLAGT-DNGLYVYHNDTT-PLQHIIHDSR---------N-I- 273 (758)
T ss_dssp EE------------EEEEEE--EEEEEEEEEECTTCC-EEEEE-TTEEEEECCTTS-CCEEECCCTT---------C-T-
T ss_pred eE------------EeccCC--CCCeEEEEEEcCCCC-EEEEe-CCceeEEecCCC-cEEEEEcCCC---------C-c-
Confidence 41 111111 122355666666554 44444 567877765321 1100100000 0 0
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec------CCCCCCeeEEEEeecCCCCCcEEEEEec
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR------PYDGHPVNCVTFLIGPHPQHIVLITGGP 444 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~------~h~~~~V~sV~fs~~~~pdg~~L~s~Gs 444 (1395)
..-....|.++....+| .|-.|+..| +.++.... ....+. .-.+..|.++... .+|.+.+. .
T Consensus 274 -~~l~~~~i~~i~~D~~g--~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D----~~g~lWiG-t- 341 (758)
T 3ott_A 274 -QSLTNNIIWNIFADQEH--NIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRD----SKGFYWFG-G- 341 (758)
T ss_dssp -TSCSCSCEEEEEECTTC--CEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEEC----TTCCEEEE-E-
T ss_pred -CcCCcCeEEEEEEcCCC--CEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEc----CCCCEEEe-e-
Confidence 00123468899888776 344455566 55554322 122211 1112268888886 67765553 3
Q ss_pred CCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 039790 445 LNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYG 520 (1395)
Q Consensus 445 ~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g 520 (1395)
.+| +..++..++.. .....+...... .... .-.+.++.-..+|.+.++. ++-|+.|+..++
T Consensus 342 ~~G-l~~~~~~~~~~----------~~~~~~~~~~~~-~~l~-~~~v~~i~~d~~g~lWigt--~~GL~~~~~~~~ 402 (758)
T 3ott_A 342 ANG-LIRFTDPAGER----------HDAIWYRMGDKT-YPLS-HNRIRHIYEDKEQQLWIAT--DGSINRYDYATR 402 (758)
T ss_dssp TTE-EEEESCTTSSC----------CCCEEECTTCSS-SCCS-CSCEEEEEECTTSCEEEEE--TTEEEEEETTTT
T ss_pred CCc-ceeeccccccc----------ceeEEeccCCcC-CCCC-CCceEEEEECCCCCEEEEe--CCcHhhcCcCCC
Confidence 444 66666554300 111122211000 0000 1112345666778766644 457888987654
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=89.98 E-value=5.6 Score=45.59 Aligned_cols=63 Identities=13% Similarity=-0.001 Sum_probs=35.7
Q ss_pred CCCEEEEEEc-CCeEEEEECCC--CceEEeccC---CCCeEEEEEeeCCCCEEEEEEC-C---------CcEEEEECCCC
Q 039790 227 NRNYICYGLK-LGNIRILNIIT--ALRSLLRGH---TQRVTDMAFFAEDVHLLASASV-D---------GRFFIWNITEG 290 (1395)
Q Consensus 227 dg~~LasGs~-DG~IrIWd~~~--~~~~~l~~H---~~~V~slaf~s~dg~~LaSgs~-D---------gtV~IWdl~tg 290 (1395)
++++++.|+. ...+.+||..+ ..-..+..- ...-.+++. -++.+++.||. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 6677777764 35688899874 332222211 111122222 26777777776 2 46889998876
Q ss_pred C
Q 039790 291 P 291 (1395)
Q Consensus 291 ~ 291 (1395)
.
T Consensus 97 ~ 97 (357)
T 2uvk_A 97 S 97 (357)
T ss_dssp E
T ss_pred c
Confidence 5
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=89.83 E-value=16 Score=43.13 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=72.9
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc------------eeEEecC------CCCCCeeEEEEeecCCCCCcEE
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKST------------PLAVLRP------YDGHPVNCVTFLIGPHPQHIVL 439 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~------------~l~tl~~------h~~~~V~sV~fs~~~~pdg~~L 439 (1395)
.|..+..+|+| ++||..+ +..|.|-.+..+. ..+.+.- ... +|..+.|.|.. ..|..|
T Consensus 67 ~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s-~I~qVlWHPl~-~~ds~L 142 (452)
T 3pbp_A 67 DTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKS-SIKKVLFHPKS-YRDSCI 142 (452)
T ss_dssp TTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCC-CEEEEEECTTB-GGGCEE
T ss_pred ceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCC-ceeEEEecccc-CCCCeE
Confidence 57889999998 7888775 5578888776321 1223332 123 79999997322 134466
Q ss_pred EEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccc-cccccceEEEEeCCCCEEEEEe--CCCeEEEEE
Q 039790 440 ITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRL-EDAFFNQVVALNRAGLFLLANA--KKNAIYAIH 516 (1395)
Q Consensus 440 ~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~-~~~~~~~~l~~S~dg~~LaSgs--~Dg~I~iWd 516 (1395)
++-- .|++||+||+.... + +.. .|+..... .+. ....-...++|..+|..|.... .+|.||...
T Consensus 143 VVLt-sD~~Ir~yDl~~s~--------~--~P~-~L~k~~~~-fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 143 VVLK-EDDTITMFDILNSQ--------E--KPI-VLNKPNNS-FGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEE-TTSCEEEEETTCTT--------S--CCE-EESCCCSE-EESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred EEEe-cCCEEEEEEcccCC--------C--CCc-chhccccc-cCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 6666 89999999998641 0 111 23211110 000 0001223689999888776644 778887654
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=88.83 E-value=16 Score=40.98 Aligned_cols=66 Identities=2% Similarity=-0.116 Sum_probs=37.7
Q ss_pred EecCCCEEEEEEc----C-------CeEEEEECCCCceEEeccCCCCe--EEEEEeeCCCCEEEEEECC--------CcE
Q 039790 224 IAVNRNYICYGLK----L-------GNIRILNIITALRSLLRGHTQRV--TDMAFFAEDVHLLASASVD--------GRF 282 (1395)
Q Consensus 224 ~Spdg~~LasGs~----D-------G~IrIWd~~~~~~~~l~~H~~~V--~slaf~s~dg~~LaSgs~D--------gtV 282 (1395)
...++++++.|+. + ..+.+||..++.-..+..-...- .+++. -++.+++.||.+ ..+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceE
Confidence 3457788888874 1 12778888877433332211111 12222 266777777743 358
Q ss_pred EEEECCCCC
Q 039790 283 FIWNITEGP 291 (1395)
Q Consensus 283 ~IWdl~tg~ 291 (1395)
.+||+.+++
T Consensus 120 ~~~d~~~~~ 128 (315)
T 4asc_A 120 MCYDRLSFK 128 (315)
T ss_dssp EEEETTTTE
T ss_pred EEECCCCCc
Confidence 889988764
No 337
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.82 E-value=49 Score=43.56 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=33.8
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
.+.+++.. ++..++++.+ .|+++|||++.++ +|+.+.....
T Consensus 237 ~~~~~~~~----~~~~~lftl~-~D~~LRiWsl~t~------------~~v~t~dL~~ 277 (950)
T 4gq2_M 237 TIISMIFL----STYNVLVMLS-LDYKLKVLDLSTN------------QCVETIELSQ 277 (950)
T ss_dssp CEEEEEEE----TTTTEEEEEE-TTCEEEEEETTTT------------EEEEEEECCC
T ss_pred eEEEEeec----CCCcEEEEEE-CCCEEEEEECCCC------------CeEeeecccc
Confidence 45666776 7888999988 9999999999998 9998877543
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.80 E-value=7.6 Score=49.44 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=39.5
Q ss_pred cCCCEEEEEEcC----CeEEEEECCCCceEEec-c------CCCC-eEEEEEeeC-CCCEEEEEECCC------cEEEEE
Q 039790 226 VNRNYICYGLKL----GNIRILNIITALRSLLR-G------HTQR-VTDMAFFAE-DVHLLASASVDG------RFFIWN 286 (1395)
Q Consensus 226 pdg~~LasGs~D----G~IrIWd~~~~~~~~l~-~------H~~~-V~slaf~s~-dg~~LaSgs~Dg------tV~IWd 286 (1395)
.++.+++.|+.+ ..+.+||..++.-..+. . ...+ -.+++. -. ++.+++.||.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~-~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT-ISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEE-ETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEE-EccCCEEEEEcCCCCCCCccccEEEEe
Confidence 577788888754 46888998887533333 1 1111 123333 22 777888887543 478888
Q ss_pred CCCCC
Q 039790 287 ITEGP 291 (1395)
Q Consensus 287 l~tg~ 291 (1395)
+.+..
T Consensus 475 ~~t~~ 479 (695)
T 2zwa_A 475 MKTRE 479 (695)
T ss_dssp TTTTE
T ss_pred CCCCc
Confidence 88754
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=85.68 E-value=19 Score=41.06 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=29.6
Q ss_pred CCCEEEEEEc-C---------CeEEEEECCCCceEEeccCC--CCeEEEEEeeCCCCEEEEEECC
Q 039790 227 NRNYICYGLK-L---------GNIRILNIITALRSLLRGHT--QRVTDMAFFAEDVHLLASASVD 279 (1395)
Q Consensus 227 dg~~LasGs~-D---------G~IrIWd~~~~~~~~l~~H~--~~V~slaf~s~dg~~LaSgs~D 279 (1395)
++++++.|+. + ..+.+||..+..-..+.... .+....++ ..++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTF-VHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEE-EETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEE-EECCEEEEEeCcC
Confidence 6777777765 2 46889999887533332211 11111112 2377888888865
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=85.45 E-value=15 Score=39.62 Aligned_cols=192 Identities=10% Similarity=0.066 Sum_probs=98.5
Q ss_pred CCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCc
Q 039790 270 VHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGK 348 (1395)
Q Consensus 270 g~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~ 348 (1395)
..+|.....| +|+.=....+.. ..+.......+. .=..+..++|+|++ .|+++ .++.+.+++......
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~--------~~~~~~a~~iG~~gw~~~~~laf~P~G-~LYaV-~~G~Ly~~~~~t~~~ 72 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKN--------DNWLARATLIGKGGWSNFKFLFLSPGG-ELYGV-LNDKIYKGTPPTHDN 72 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTT--------CCHHHHSEEEESSSCTTCSEEEECTTS-CEEEE-ETTEEEEESCCCSTT
T ss_pred ceEEEEEeCC-cEEecCCCCCcc--------cchhhhccccCccccccceeEEECCCc-cEEEE-eCCeEEEECCCCCCc
Confidence 3456777777 666554444331 111111222222 12356799999966 47777 888888877543221
Q ss_pred cccccCCCCCccCccccccceEEEc--ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCcee------EEecCCCC
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVG--KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPL------AVLRPYDG 420 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~--~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l------~tl~~h~~ 420 (1395)
. .|--. -..+. +... -.++.|.++| .+.++ .||.|.-|+-.+...- ..+-.+.-
T Consensus 73 ~------------~W~~s--~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw 134 (236)
T 1tl2_A 73 D------------NWMGR--AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGW 134 (236)
T ss_dssp C------------CHHHH--CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSG
T ss_pred c------------ccccc--ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCC
Confidence 1 11110 11121 1122 4688999998 56655 6699988875332110 11111111
Q ss_pred CCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 421 HPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 421 ~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
..+..|.|. |+|.+.++. |+.++-+..-++ ....|-...+.-++.+. ..+ ..+.|.++|
T Consensus 135 ~~~~~lff~----p~G~Lyav~---dg~lyr~~~P~~-------~~~~wl~~~~~~g~~g~------~~y-r~l~f~~~G 193 (236)
T 1tl2_A 135 SGFKFLFFH----PNGYLYAVH---GQQFYKALPPVS-------NQDNWLARATKIGQGGW------DTF-KFLFFSSVG 193 (236)
T ss_dssp GGEEEEEEC----TTSCEEEEE---TTEEEEECCCSS-------TTCCHHHHCEEEESSSG------GGE-EEEEECTTS
T ss_pred CceEEEEEC----CCceEEEEe---CCcEEecCCCCC-------CCcccccccceeccCCc------ceE-EEEEECCCC
Confidence 258899998 999877663 666543332221 00122111222221211 111 246699999
Q ss_pred CEEEEEeCCCeEE
Q 039790 501 LFLLANAKKNAIY 513 (1395)
Q Consensus 501 ~~LaSgs~Dg~I~ 513 (1395)
.+.+.. ++.+|
T Consensus 194 ~l~~v~--~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ--GGKFY 204 (236)
T ss_dssp CEEEEE--TTEEE
T ss_pred cEEEEe--CCeEE
Confidence 888777 77554
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=85.27 E-value=12 Score=41.79 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=36.9
Q ss_pred CCCEEEEEEc----C-----CeEEEEECCCCceEEecc---CCCCeEEEEEeeCCCCEEEEEECC-----CcEEEEECCC
Q 039790 227 NRNYICYGLK----L-----GNIRILNIITALRSLLRG---HTQRVTDMAFFAEDVHLLASASVD-----GRFFIWNITE 289 (1395)
Q Consensus 227 dg~~LasGs~----D-----G~IrIWd~~~~~~~~l~~---H~~~V~slaf~s~dg~~LaSgs~D-----gtV~IWdl~t 289 (1395)
++++++.|+. + ..+.+||..+..-..+.. .......+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence 6777777765 2 468889988874333321 1111222233 67777777654 3588899887
Q ss_pred CC
Q 039790 290 GP 291 (1395)
Q Consensus 290 g~ 291 (1395)
..
T Consensus 147 ~~ 148 (308)
T 1zgk_A 147 DE 148 (308)
T ss_dssp TE
T ss_pred Ce
Confidence 65
No 342
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.06 E-value=72 Score=38.18 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=109.4
Q ss_pred CCEEEEEEecCCC-EEEEEEcCCeEEEEECCCCc----eEEec-----c----CCCCeEEEEEeeCC----CCEEEEEEC
Q 039790 217 GLVLGRQIAVNRN-YICYGLKLGNIRILNIITAL----RSLLR-----G----HTQRVTDMAFFAED----VHLLASASV 278 (1395)
Q Consensus 217 ~~V~~va~Spdg~-~LasGs~DG~IrIWd~~~~~----~~~l~-----~----H~~~V~slaf~s~d----g~~LaSgs~ 278 (1395)
..-+.++|.|||. .|+++...|.|++++..... +..+. + ..+....|+| .++ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~-~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAF-HPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEE-CTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEe-CCCCcCCCEEEEEEeC
Confidence 4567899999996 45556788999999764321 12111 1 1356789999 554 444444332
Q ss_pred C------------CcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC-----------
Q 039790 279 D------------GRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG----------- 335 (1395)
Q Consensus 279 D------------gtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~----------- 335 (1395)
+ ..|.-|.+..+.... ........+..+.. .........|.|.|++..++++|..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~-~d~~~~~~i~~~~~-~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q 170 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQ-VDLRTARVFLEVAE-LHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMD 170 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTS-BCGGGCEEEEEEEE-SSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCc-cCCCCceEEEEcCC-CCCcccCCcEeECCCCcEEEEeCCCCCCCCcccccc
Confidence 1 134446665431000 00011223333221 2223345689999999766666653
Q ss_pred ------CeEEEEEcCCCCccccccC--CCCCccCccccccceEEEcccCCCeEEEEEecCCC----c-EEEEEeCCC---
Q 039790 336 ------NRILKIDSNRVGKGERFSA--EEPLKCPVDELINGVQLVGKHDGEITELSMCQWLT----T-RLASASLDG--- 399 (1395)
Q Consensus 336 ------~~ii~~d~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~----~-~LaSgs~Dg--- 399 (1395)
++|++++.........|+. +.++.-. .-......-.||.. ...++|.+..+ . ++..+...|
T Consensus 171 ~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~--~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~ 247 (463)
T 2wg3_C 171 GLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNS--TNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNR 247 (463)
T ss_dssp TCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTC--SSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC-----
T ss_pred CcCCCCeeEEEEECCCCcccccCcCCCCCCCcCC--CCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCC
Confidence 3477776643211111111 1111100 00011222334654 45789999731 3 444433212
Q ss_pred -cEEEEeCCCC------ceeEEecCCCCCCeeEEEEeecCC---CCCcEEEEEecCCCeEEEEECC
Q 039790 400 -TVKIWDDRKS------TPLAVLRPYDGHPVNCVTFLIGPH---PQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 400 -~IrIWDl~sg------~~l~tl~~h~~~~V~sV~fs~~~~---pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.-.|..+..| .++..+..|.+..+..+.|-.... -.|.+|+. . ..+.|....+.
T Consensus 248 ~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~-~-~~g~i~~~~~~ 311 (463)
T 2wg3_C 248 SSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG-D-RNGNFLTLQQS 311 (463)
T ss_dssp -CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE-E-TTSCEEEEEC-
T ss_pred CCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe-c-CCCcEEEEEeC
Confidence 2344444333 366677655333788888852211 13445553 3 44655444443
No 343
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.05 E-value=8.4 Score=45.51 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhhchh
Q 039790 1138 LQDALRSNLETSIIP 1152 (1395)
Q Consensus 1138 i~~~~~~~~~~~liP 1152 (1395)
+|..|.+.....|.|
T Consensus 181 ~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 181 QQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhhcccCC
Confidence 344444444444444
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.97 E-value=6.4 Score=42.39 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=64.2
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEeccCCCC--------eEEEEEeeCCCCEEEEEECCCcEEEEECCC
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRGHTQR--------VTDMAFFAEDVHLLASASVDGRFFIWNITE 289 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~H~~~--------V~slaf~s~dg~~LaSgs~DgtV~IWdl~t 289 (1395)
.+.+++|+|+|.+.++ .+|.++-.+..++.-..+.+-... -.++.| .++|.+.++ .||.|+-|+-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~f-D~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFF-DPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEE-CTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEE-CCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999996666 678777666655321212111222 356777 889988777 569998887543
Q ss_pred CCCCCCCcccccceEEEEEEecC-CCCCccEEEEeCCCCeEEEEEeCCeEEE
Q 039790 290 GPDEEDKPQILGKIVVAIQILAD-GDSVHPRVCWHPHKQEILMLAIGNRILK 340 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~-~~~~v~~v~~sp~~~~lla~g~~~~ii~ 340 (1395)
... ..++..-..++. .=..+..|.+.|++. |+++. ++.+.+
T Consensus 117 ~~~--------~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~-dg~lyr 158 (236)
T 1tl2_A 117 SDT--------DNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-GQQFYK 158 (236)
T ss_dssp STT--------CCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE-TTEEEE
T ss_pred CCC--------CceeccccEeccCCCCceEEEEECCCce-EEEEe-CCcEEe
Confidence 221 111111111222 223456788999885 66666 777655
No 345
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=84.44 E-value=30 Score=38.66 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=37.5
Q ss_pred EecCCCEEEEEEc----CC-------eEEEEECCCCceEEeccCC--CCeEEEEEeeCCCCEEEEEECC-------CcEE
Q 039790 224 IAVNRNYICYGLK----LG-------NIRILNIITALRSLLRGHT--QRVTDMAFFAEDVHLLASASVD-------GRFF 283 (1395)
Q Consensus 224 ~Spdg~~LasGs~----DG-------~IrIWd~~~~~~~~l~~H~--~~V~slaf~s~dg~~LaSgs~D-------gtV~ 283 (1395)
...++.+++.|+. ++ .+.+||..++.-..+..-. ..-.+++. .++.+++.||.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGE--VDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEE--ETTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEE--ECCEEEEEcCccCCCCcccceEE
Confidence 4457788888873 12 1778888876533332111 11122232 267777777764 2478
Q ss_pred EEECCCCC
Q 039790 284 IWNITEGP 291 (1395)
Q Consensus 284 IWdl~tg~ 291 (1395)
+||+.+.+
T Consensus 131 ~yd~~~~~ 138 (318)
T 2woz_A 131 CYDPVAAK 138 (318)
T ss_dssp EEETTTTE
T ss_pred EEeCCCCC
Confidence 88888764
No 346
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.12 E-value=48 Score=43.62 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=52.7
Q ss_pred eCCCCeEEEEEeCCeEEEEEcCCCCcc---ccccCCCCCccCccccccceEEEcc---cCCCeEEEEEecCCCcEEEEEe
Q 039790 323 HPHKQEILMLAIGNRILKIDSNRVGKG---ERFSAEEPLKCPVDELINGVQLVGK---HDGEITELSMCQWLTTRLASAS 396 (1395)
Q Consensus 323 sp~~~~lla~g~~~~ii~~d~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~l~~---h~~~V~slafspdg~~~LaSgs 396 (1395)
.-+...++++..+|+++++........ ..|.. ..+...+..... .+.... -...+.+++..++. .++++-+
T Consensus 178 av~~~~l~Vsl~dGgLlrl~r~~~~~~~~~~~f~~-~s~~~sl~~l~~-~~~~~~~~~~~~~~~~~~~~~~~-~~lftl~ 254 (950)
T 4gq2_M 178 AISTSEICVSFFNGGLTKIILNPKDASHYEQHIDD-SSYLFSLKKYLS-LQAFKADYRSPNTIISMIFLSTY-NVLVMLS 254 (950)
T ss_dssp ECSSSEEEEEETTSCEEEEEEETTTTEEEEEEECC-CCCCCBCC--------CCSSCCCTTCEEEEEEETTT-TEEEEEE
T ss_pred EEcCCeEEEEECCCCEEEEEecCCCCCcceeeecC-CcHHHhhhhhcc-cccCCCCCCCcceEEEEeecCCC-cEEEEEE
Confidence 334557888888999998854332110 01111 111000101010 000111 12356788887776 7999999
Q ss_pred CCCcEEEEeCCCCceeEEec
Q 039790 397 LDGTVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 397 ~Dg~IrIWDl~sg~~l~tl~ 416 (1395)
.|+++|||++.+++++.+..
T Consensus 255 ~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 255 LDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTCEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCCeEeeec
Confidence 99999999999999998865
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=81.98 E-value=26 Score=47.48 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=96.8
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccc
Q 039790 224 IAVNRNYICYGLKLGNIRILNIITAL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGK 302 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~IrIWd~~~~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~ 302 (1395)
.+|..+.||.-. ..++.|||+++.. +..+. ....|.-=.|.+++ .|+-.+ +..|+-|++.... .
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s-~--------- 137 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGES-Q--------- 137 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccc-cCCCceEEEecCCC--eeEEEc-CCeEEEeccCCCC-c---------
Confidence 467777777654 6899999999874 32222 23456666774443 333333 3579999996422 0
Q ss_pred eEEEEEEecCC----CCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCC
Q 039790 303 IVVAIQILADG----DSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGE 378 (1395)
Q Consensus 303 ~i~~l~~~~~~----~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~ 378 (1395)
..+++..| ...|.....+++..+++.+|-...-- .-.|....|+.+... .+.+.||.+.
T Consensus 138 ---P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~----~v~G~mQLyS~er~~----------sQ~iegha~~ 200 (1630)
T 1xi4_A 138 ---PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN----RVVGAMQLYSVDRKV----------SQPIEGHAAS 200 (1630)
T ss_pred ---cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCC----cccceeeeeeccccc----------chhhhHhHhh
Confidence 11112221 23344455677777777777521100 011222222222211 2344555544
Q ss_pred eEEEEEe--cCCCcEEEEEeC---CCcEEEEeCCCC---cee------EEecCC--CCCCeeEEEEeecCCCCCcEEEEE
Q 039790 379 ITELSMC--QWLTTRLASASL---DGTVKIWDDRKS---TPL------AVLRPY--DGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 379 V~slafs--pdg~~~LaSgs~---Dg~IrIWDl~sg---~~l------~tl~~h--~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
...+.+. +....+|+.+.. .+.+.|-++... .+. ..+... .+.-..++..+ +....+...
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs----~k~g~iy~i 276 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS----EKHDVVFLI 276 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEec----cccCEEEEE
Confidence 3333332 111123333322 267888887442 111 111111 11134455555 333333333
Q ss_pred ecCCCeEEEEECCCC
Q 039790 443 GPLNRELKIWASAEE 457 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg 457 (1395)
. .-|.|.+||+.++
T Consensus 277 t-k~G~~~~~d~~t~ 290 (1630)
T 1xi4_A 277 T-KYGYIHLYDLETG 290 (1630)
T ss_pred e-cCceEEEEecccc
Confidence 3 7899999999998
No 348
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.00 E-value=4.1 Score=48.06 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=0.0
Q ss_pred HHHHhc
Q 039790 1288 SWLCSQ 1293 (1395)
Q Consensus 1288 ~~l~~~ 1293 (1395)
++-|++
T Consensus 439 r~sCsk 444 (562)
T 3ghg_A 439 RRSCSK 444 (562)
T ss_dssp ------
T ss_pred eccccc
Confidence 444554
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=79.64 E-value=1.4e+02 Score=37.76 Aligned_cols=187 Identities=6% Similarity=0.018 Sum_probs=102.0
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEECCCCceEEecc-----CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNIITALRSLLRG-----HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGP 291 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~~~~~~~~l~~-----H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~ 291 (1395)
..|.++.. .+| .|..|+.+ .|..||..++....+.. ....|.++.. ..++.+.+ |+.+ -|..+|..++.
T Consensus 103 ~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWi-gt~~-Gl~~~~~~~~~ 176 (758)
T 3ott_A 103 TDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIR-TKDNQIYV-GTYN-GLCRYIPSNGK 176 (758)
T ss_dssp SCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEE-CTTCCEEE-EETT-EEEEEETTTTE
T ss_pred ceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEE-cCCCCEEE-EeCC-CHhhCccCCCc
Confidence 35666644 344 56667766 67889988776554411 1346888877 55666554 4444 47788877653
Q ss_pred CCCCCcccccceEEEEEEecC---CCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccc
Q 039790 292 DEEDKPQILGKIVVAIQILAD---GDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELING 368 (1395)
Q Consensus 292 ~~~~~~~~~~~~i~~l~~~~~---~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~ 368 (1395)
. ..+..... ....+.++....++..+.++. .+++.+++.... ... .
T Consensus 177 ~------------~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~~Gl~~~~~~~~-~~~-----------------~ 225 (758)
T 3ott_A 177 F------------EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-EGYLFQYFPSTG-QIK-----------------Q 225 (758)
T ss_dssp E------------EEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-EEEEEEEETTTT-EEE-----------------E
T ss_pred e------------EEecCCCccccccceeEEEEEECCCCEEEEEE-CCCCeEEcCCCC-eEE-----------------e
Confidence 0 01100000 122356677777666555554 457888775321 100 0
Q ss_pred eEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEecCC-------CCCCeeEEEEeecCCCCCcEEEE
Q 039790 369 VQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPY-------DGHPVNCVTFLIGPHPQHIVLIT 441 (1395)
Q Consensus 369 ~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h-------~~~~V~sV~fs~~~~pdg~~L~s 441 (1395)
...+ ....|.++....+| . |..|+.+ -+.++|..++... .+... ....|.++... .+|...+.
T Consensus 226 ~~~l--~~~~i~~i~~d~~g-~-lWigT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D----~~g~lWiG 295 (758)
T 3ott_A 226 TEAF--HNNSIKSLALDGNG-D-LLAGTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFAD----QEHNIWLG 295 (758)
T ss_dssp EEEE--EEEEEEEEEECTTC-C-EEEEETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEEC----TTCCEEEE
T ss_pred ccCC--CCCeEEEEEEcCCC-C-EEEEeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEc----CCCCEEEE
Confidence 1111 12358888887776 3 4444544 5888987766533 23211 11268888886 66765543
Q ss_pred EecCCCeEEEEE
Q 039790 442 GGPLNRELKIWA 453 (1395)
Q Consensus 442 ~Gs~Dg~I~IWD 453 (1395)
. ..| |.++.
T Consensus 296 -T-~~G-l~~~~ 304 (758)
T 3ott_A 296 -T-DYG-ISLSR 304 (758)
T ss_dssp -E-SSS-EEEEC
T ss_pred -e-CCc-ccccc
Confidence 3 456 55543
No 350
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=79.16 E-value=13 Score=42.66 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=38.5
Q ss_pred CEEEEEEcCCeEEEEECCCCce-EEeccC-CCCeEEEEE-e-eCCCCEEEEE-ECCCcEEEEECCCCC
Q 039790 229 NYICYGLKLGNIRILNIITALR-SLLRGH-TQRVTDMAF-F-AEDVHLLASA-SVDGRFFIWNITEGP 291 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~~~~-~~l~~H-~~~V~slaf-~-s~dg~~LaSg-s~DgtV~IWdl~tg~ 291 (1395)
.+++.++.||.|.-+|..+|.. -.+... ..++....- . ..++..++.. +.||.|+.++..+|.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence 4688889999999999988853 344332 122222211 0 0123334343 689999999988764
No 351
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.62 E-value=38 Score=38.58 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=5.3
Q ss_pred HHHHhhhhchhhHH
Q 039790 1142 LRSNLETSIIPAFE 1155 (1395)
Q Consensus 1142 ~~~~~~~~liP~fe 1155 (1395)
|..+....|.|.++
T Consensus 188 L~qv~a~~llP~~~ 201 (390)
T 1deq_A 188 LEQVIAINLLPSRD 201 (390)
T ss_pred HHhhhhhccccccc
Confidence 33333333334333
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=78.07 E-value=1.3e+02 Score=36.65 Aligned_cols=263 Identities=10% Similarity=-0.032 Sum_probs=134.0
Q ss_pred cCCCEEEEEEc-CCeEEEEECCCCceE--EeccCCCCeEEEEEee-CCCCEEEEEECCCcEEEEECCCCCCC--CCCccc
Q 039790 226 VNRNYICYGLK-LGNIRILNIITALRS--LLRGHTQRVTDMAFFA-EDVHLLASASVDGRFFIWNITEGPDE--EDKPQI 299 (1395)
Q Consensus 226 pdg~~LasGs~-DG~IrIWd~~~~~~~--~l~~H~~~V~slaf~s-~dg~~LaSgs~DgtV~IWdl~tg~~~--~~~~~~ 299 (1395)
.||+||+.-.+ +..|-..+++.-+.. .-......+..++|-. ++..|++.++... |=+= ..|..+ .....+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~-~P~p--ndg~~~~~~~~~~y 216 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFI-IPHP--NDGKVFDLQDENSY 216 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSC-EESS--CSSSCCCTTSTTEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceee-ccCC--CCCcccccCChhhc
Confidence 37889988864 567777888775321 2223556788999842 6788888887642 2111 111111 111001
Q ss_pred cc--------ceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeC---------------CeEEEEEcCCCCcc---cccc
Q 039790 300 LG--------KIVVAIQILADGDSVHPRVCWHPHKQEILMLAIG---------------NRILKIDSNRVGKG---ERFS 353 (1395)
Q Consensus 300 ~~--------~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~---------------~~ii~~d~~~~~~~---~~~s 353 (1395)
+ ..-..+++.-. .....+...+++.+.++++.+ +.+++++..+.... ..|.
T Consensus 217 -~~f~~iD~~tm~v~~Qv~v~--gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~ 293 (638)
T 3sbq_A 217 -TMYNAIDAETMEMAFQVIVD--GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFI 293 (638)
T ss_dssp -EEEEEEETTTCSEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCB
T ss_pred -eEEEEEcCCccEEEEEEEcC--CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeE
Confidence 0 00001122111 122235556777777777753 23444444332110 0010
Q ss_pred CCC--CCccCcccc----ccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC------ce-------eEE
Q 039790 354 AEE--PLKCPVDEL----INGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS------TP-------LAV 414 (1395)
Q Consensus 354 ~~~--~~~~~~~~~----~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg------~~-------l~t 414 (1395)
.-+ ...+..... ..++..+-.-......+.++|||...+++|-.+.+|.++|+++- +. +..
T Consensus 294 ~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae 373 (638)
T 3sbq_A 294 TLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE 373 (638)
T ss_dssp CCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC
T ss_pred EECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee
Confidence 000 010100000 01122222233445678899999656666667899999998741 11 222
Q ss_pred ecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEE
Q 039790 415 LRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVV 494 (1395)
Q Consensus 415 l~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l 494 (1395)
.. -+......+|. ++| ...++-..|..|.-|++...-.. ....+.+..+..+..|-..... . ....-
T Consensus 374 ~e--~GlGPlHt~Fd----~~G-~aYTtlfidSqvvkWni~~a~~~--~~g~~~~~v~~k~dv~YqpGH~-~---~~~ge 440 (638)
T 3sbq_A 374 PE--LGLGPLHTTFD----GRG-NAYTTLFIDSQVVKWNMEEAVRA--YKGEKVNYIKQKLDVHYQPGHL-H---ASLCE 440 (638)
T ss_dssp CB--CCSCEEEEEEC----SSS-EEEEEETTTTEEEEEEHHHHHHH--HTTCCCCCEEEEEECSSCEEEE-E---ETTTT
T ss_pred cc--CCCcccEEEEC----CCC-ceEeeeeecceEEEEeccHHHHH--hcCccCCeeeeccccccCCccc-c---cCCCc
Confidence 22 23368899998 888 66666779999999999642000 0011234677777766533110 0 00000
Q ss_pred EEeCCCCEEEEEe
Q 039790 495 ALNRAGLFLLANA 507 (1395)
Q Consensus 495 ~~S~dg~~LaSgs 507 (1395)
.-.+||+||++..
T Consensus 441 t~~~dGk~lv~ln 453 (638)
T 3sbq_A 441 TNEADGKWLVALS 453 (638)
T ss_dssp STTCCSCEEEEEE
T ss_pred cCCCCccEEEEec
Confidence 1148899998875
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.28 E-value=1.1e+02 Score=35.21 Aligned_cols=27 Identities=11% Similarity=-0.065 Sum_probs=17.7
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWD 405 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWD 405 (1395)
.+.+|.+++.++..|..+...+ |...+
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 5889999987445666666554 44444
No 354
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=75.88 E-value=66 Score=43.72 Aligned_cols=230 Identities=11% Similarity=0.103 Sum_probs=119.6
Q ss_pred CCeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCC
Q 039790 237 LGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSV 316 (1395)
Q Consensus 237 DG~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 316 (1395)
+..|.|.|+..+....-+.-+. -+.-. +|..+.|+--. .+++.|+|+.+...+..+ .-.+ .
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~A--dsAIM-nP~~~iiALra-g~~lQiFnl~~k~klks~--------------~~~e-~ 107 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISA--DSAIM-NPASKVIALKA-GKTLQIFNIEMKSKMKAH--------------TMTD-D 107 (1630)
T ss_pred CceEEEEECCCCCCcccccccc--hhhcc-CCCcceEEEec-CCeEEEeehHHhhhhccc--------------ccCC-C
Confidence 3478899998863211110000 01112 45556555544 578999999887632211 1111 1
Q ss_pred ccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEccc----CCCeEEEEEecCCCcEE
Q 039790 317 HPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKH----DGEITELSMCQWLTTRL 392 (1395)
Q Consensus 317 v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h----~~~V~slafspdg~~~L 392 (1395)
.+.|.--....++.-.+..++.|+...... +.+.|..| ...|..-..+++. +|+
T Consensus 108 --VvfWkWis~~~l~lVT~~aVyHW~~~~~s~-------------------P~k~fdR~~~L~~~QIinY~~d~~~-kW~ 165 (1630)
T 1xi4_A 108 --VTFWKWISLNTVALVTDNAVYHWSMEGESQ-------------------PVKMFDRHSSLAGCQIINYRTDAKQ-KWL 165 (1630)
T ss_pred --ceEEEecCCCeeEEEcCCeEEEeccCCCCc-------------------cHHHHhcchhcccCeeEEeeeCCCC-CeE
Confidence 244444444567777778888887743111 11222222 3456667777777 454
Q ss_pred EEEe-------CCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEec---CCCeEEEEECCCC-CCCC
Q 039790 393 ASAS-------LDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGP---LNRELKIWASAEE-EGWL 461 (1395)
Q Consensus 393 aSgs-------~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs---~Dg~I~IWDl~tg-~~~~ 461 (1395)
+..+ ..|.+.+|.+..+ .-+.+.||.+ ....+.....++| ..|++-+. ..+.++|-++... .+.
T Consensus 166 ~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~-~F~~~~~~~~~~~--~~l~~f~~~~~~g~kLhi~Ei~~~~~~~- 240 (1630)
T 1xi4_A 166 LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA-SFAQFKMEGNAEE--STLFCFAVRGQAGGKLHIIEVGTPPTGN- 240 (1630)
T ss_pred EEEeeccCCCcccceeeeeecccc-cchhhhHhHh-hhheeccCCCCCC--ceEEEEEEecCCCceEEEEecCCCccCC-
Confidence 4332 3588999987654 3456677765 4444444211111 22322221 1268999988553 110
Q ss_pred CCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 462 LPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 462 ~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
+. -..+.+. +...... ..+|.+ .+..++.-.++.--++-|.|+++|+.+|.
T Consensus 241 -~~--f~kk~~~-~~~~~~~----~~Dfpv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 241 -QP--FPKKAVD-VFFPPEA----QNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred -CC--Ccccccc-ccCCccc----ccCcce-EEEeccccCEEEEEecCceEEEEecccch
Confidence 00 0001111 1111111 123333 56777777777788889999999999975
No 355
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=75.14 E-value=1.1e+02 Score=34.18 Aligned_cols=175 Identities=7% Similarity=-0.001 Sum_probs=91.4
Q ss_pred EEEecCCCEEEEEEcC--------------CeEEEEECCCCceEEeccCCCCeEEEEEeeCCCCEEEEEE--CCC--cEE
Q 039790 222 RQIAVNRNYICYGLKL--------------GNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASAS--VDG--RFF 283 (1395)
Q Consensus 222 va~Spdg~~LasGs~D--------------G~IrIWd~~~~~~~~l~~H~~~V~slaf~s~dg~~LaSgs--~Dg--tV~ 283 (1395)
--|+++|++|+++... +.|+..+++++....+.... +..| ++++++|+-.. .++ .|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~-s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYA-SLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEE-EEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEE-EEeCCEEEEEeecCCCCceEE
Confidence 4578999999998653 46888888887655554322 2255 55788888776 334 455
Q ss_pred EEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEe-CCeEEEEEcCCCCccccccCCCCCccCc
Q 039790 284 IWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAI-GNRILKIDSNRVGKGERFSAEEPLKCPV 362 (1395)
Q Consensus 284 IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~-~~~ii~~d~~~~~~~~~~s~~~~~~~~~ 362 (1395)
.-++.... ..++.. +.. ..|+++++.|+.+.. ...|.+.+......
T Consensus 133 ~~~~dGs~--------------~~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~-------------- 179 (302)
T 3s25_A 133 RIRIDGEE--------------KKKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE-------------- 179 (302)
T ss_dssp EEETTSCC--------------CEEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE--------------
T ss_pred EEECCCCC--------------eEEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE--------------
Confidence 55555322 011111 111 234667777776654 35566655432111
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEE
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLD--GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLI 440 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~D--g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~ 440 (1395)
..++. +... ..++|++ .+|+-...+ ..|..-++..+. ...|.. . .+. .|+ |++.+|.
T Consensus 180 ------~~l~~---~~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~-~~~--~~~----~~g~~Iy 238 (302)
T 3s25_A 180 ------ALFYD---CNCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINNPN-PVVLTE--A-NIE--HYN----VYGSLIF 238 (302)
T ss_dssp ------EEEEC---SCEE-EEEEEET-TEEEEEEGGGTTEEEEECSSSCC-CEECSC--S-CEE--EEE----EETTEEE
T ss_pred ------EEEeC---CCcc-ceeeecC-CEEEEEEcCCCcEEEEEECCCCC-eEEEeC--C-Ccc--eEE----ECCCEEE
Confidence 12222 2222 3466888 455554443 245555554433 444432 2 343 366 6788887
Q ss_pred EEe-cCCCeEEEEECC
Q 039790 441 TGG-PLNRELKIWASA 455 (1395)
Q Consensus 441 s~G-s~Dg~I~IWDl~ 455 (1395)
.+. ...+.|..-++.
T Consensus 239 ~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 239 YQRGGDNPALCVVKND 254 (302)
T ss_dssp EEECSSSCEEEEEETT
T ss_pred EEECCCCcEEEEEECC
Confidence 653 123455555554
No 356
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=70.41 E-value=22 Score=40.79 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=65.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCC-CCcEEEEEecCCCeEEEEECCCCCCCCCCCCccc
Q 039790 390 TRLASASLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHP-QHIVLITGGPLNRELKIWASAEEEGWLLPSDIES 468 (1395)
Q Consensus 390 ~~LaSgs~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~p-dg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~ 468 (1395)
.+++.++.||.|.-+|..+|+.+.+++.....++..+.-. . .+ ++..++.....||.|..+|..+|
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~-~-~~~~~~~~vv~p~~dG~l~a~~~~~G----------- 77 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEP-S-RLETYETLIIEPFGDGNIYYFNAHQG----------- 77 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCS-C-TTTSSEEEEECCSTTTEEEEEETTTE-----------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCC-c-cccCCcEEEEEECCCCEEEEEECCCC-----------
Confidence 4788999999999999999999999875411123222110 0 01 33333332247999999998776
Q ss_pred ccEEEEEeccCcccccccccccceEEEEe-----------CCCCEEEEEeCCCeEEEEEcCCCC
Q 039790 469 WKCTQTLELKSSAELRLEDAFFNQVVALN-----------RAGLFLLANAKKNAIYAIHMDYGP 521 (1395)
Q Consensus 469 ~~~l~tl~~h~~~i~~~~~~~~~~~l~~S-----------~dg~~LaSgs~Dg~I~iWdl~~g~ 521 (1395)
.....+....-.... . +... ..+..+++|+.++.++..|+.+|+
T Consensus 78 -~~~~~~~~~~lv~~S---P-----~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 78 -LQKLPLSIRQLVSTS---P-----LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp -EEEEEEEHHHHHTTC---S-----EEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred -cEEeeeccccceecc---c-----cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 333333322100000 0 1111 145577788889999999988875
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=69.29 E-value=2.4e+02 Score=35.59 Aligned_cols=31 Identities=13% Similarity=-0.114 Sum_probs=23.2
Q ss_pred EEEE-EecCCCEEEEEEc-C----CeEEEEECCCCce
Q 039790 220 LGRQ-IAVNRNYICYGLK-L----GNIRILNIITALR 250 (1395)
Q Consensus 220 ~~va-~Spdg~~LasGs~-D----G~IrIWd~~~~~~ 250 (1395)
.++. +++++++++++-. . ..|+++|+.++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~ 168 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDF 168 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCc
Confidence 3455 8899999888733 2 3699999999854
No 358
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=68.04 E-value=59 Score=35.31 Aligned_cols=11 Identities=9% Similarity=0.646 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 039790 1021 NSDALWARFQE 1031 (1395)
Q Consensus 1021 ~~~~~~~r~~~ 1031 (1395)
..+.++.||..
T Consensus 67 ~~ee~~~~l~~ 77 (243)
T 2a01_A 67 VTQEFWDNLEK 77 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHhhH
Confidence 33444444443
No 359
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=65.93 E-value=59 Score=35.32 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039790 972 AMQDMLNQMMSTQKEIQKQM 991 (1395)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~ 991 (1395)
++.+-+.|+...-++..+++
T Consensus 14 ~~~~Y~~q~~~sa~~~~~~~ 33 (243)
T 2a01_A 14 LATVYVDVLKDSGRDYVSQF 33 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 45566666665555554444
No 360
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=64.57 E-value=1.6e+02 Score=37.08 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=59.6
Q ss_pred CCCcEEEEEeCCC------cEEEEeCCCCc--eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCC--eEEEEECCC
Q 039790 387 WLTTRLASASLDG------TVKIWDDRKST--PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNR--ELKIWASAE 456 (1395)
Q Consensus 387 dg~~~LaSgs~Dg------~IrIWDl~sg~--~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg--~I~IWDl~t 456 (1395)
++ .+++.|+.++ .+.+||..+.+ .+..+.... .-.+++.. .++..++.|| .++ .+.+||..+
T Consensus 451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R--~~h~~~~~----~~~~iyv~GG-~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR--FRHSACSL----PDGNVLILGG-VTEGPAMLLYNVTE 522 (695)
T ss_dssp TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC--BSCEEEEC----TTSCEEEECC-BCSSCSEEEEETTT
T ss_pred CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc--ccceEEEE----cCCEEEEECC-CCCCCCEEEEECCC
Confidence 45 6777777543 47889988753 222222111 12233332 4777778776 443 689999877
Q ss_pred CCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCC-CCEEEEEeC--C-----CeEEEEEcCCCC
Q 039790 457 EEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRA-GLFLLANAK--K-----NAIYAIHMDYGP 521 (1395)
Q Consensus 457 g~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~d-g~~LaSgs~--D-----g~I~iWdl~~g~ 521 (1395)
. .|..+.. ..... . ..+....+.+..+ +.+++.|+. + +.+++||+.++.
T Consensus 523 ~----------~W~~~~~---~g~~p-~--~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 523 E----------IFKDVTP---KDEFF-Q--NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp T----------EEEECCC---SSGGG-G--SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred C----------ceEEccC---CCCCC-C--cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 5 3332221 11000 0 0111123555544 777788775 2 468999988765
No 361
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=62.60 E-value=1.9e+02 Score=31.87 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=84.2
Q ss_pred CCeEEEEECCCC-ceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 237 LGNIRILNIITA-LRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 237 DG~IrIWd~~~~-~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
||.|+.|-.... ++-.-......|..|+. .. ...++. . ||.|+.|-........ .|... ..
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~-G~-~hs~~l-~-~G~v~~wG~n~~Gqlg-~P~~~-------------~~ 102 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAA-GN-YHSLAL-K-DGEVIAWGGNEDGQTT-VPAEA-------------RS 102 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEE-CS-SEEEEE-E-TTEEEEEECCTTSTTC-CCGGG-------------SS
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEe-CC-CEEEEE-E-CCEEEEeeCCCCCCCC-CCccc-------------CC
Confidence 899999976542 22111112346888876 32 334444 4 9999999876532111 11110 11
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASA 395 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSg 395 (1395)
.+..|+.- ..+.++.. ++.++.|-....+... . .......|..|+...+. .++ -
T Consensus 103 ~v~~ia~G--~~hs~al~-~G~v~~wG~n~~gqlg---------~-----------~~~~~~~i~~i~~G~~~--~~~-l 156 (282)
T 3qhy_B 103 GVDAIAAG--AWASYALK-DGKVIAWGDDSDGQTT---------V-----------PAEAQSGVTALDGGVYT--ALA-V 156 (282)
T ss_dssp SEEEEEEE--TTEEEEEE-TTEEEEEECCTTSTTS---------C-----------CGGGGSSEEEEEECSSE--EEE-E
T ss_pred CeEEEECc--CCEEEEEe-CCeEEEecCCCCCcCC---------C-----------CccCCCCeEEEEcccCE--EEE-E
Confidence 23333332 23455556 8888887654433210 0 00122357777765432 333 2
Q ss_pred eCCCcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 396 SLDGTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 396 s~Dg~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
. ||.|..|-....-.+..-..-.. .|..|+.. ....++. .||.|..|-...
T Consensus 157 ~-~G~v~~wG~n~~gqlg~p~~~~~-~v~~i~~G-----~~hs~al---~~G~v~~wG~n~ 207 (282)
T 3qhy_B 157 K-NGGVIAWGDNYFGQTTVPAEAQS-GVDDVAGG-----IFHSLAL---KDGKVIAWGDNR 207 (282)
T ss_dssp E-TTEEEEEECCTTSTTSCCGGGGS-SEEEEEEC-----SSEEEEE---ETTEEEEEECCT
T ss_pred E-CCEEEEecCCCCCCCCCceecCC-CeEEEEec-----CCEEEEE---ECCeEEEEECCC
Confidence 3 79999997554211111001112 57777774 2223333 389999997654
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.35 E-value=1e+02 Score=41.33 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=33.3
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccC
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKS 479 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~ 479 (1395)
.+.+++.. ++..++++.+ .|+++|||++.++ .|+.+.....
T Consensus 239 ~~vs~~~~----~~~~~lftL~-~D~~LRiWsl~t~------------~~v~t~DL~~ 279 (1139)
T 4fhn_B 239 TIISMIFL----STYNVLVMLS-LDYKLKVLDLSTN------------QCVETIELSQ 279 (1139)
T ss_dssp CBSCCEEE----TTTTEEEEEB-TTCEEEEEETTTT------------EEEEEEECCC
T ss_pred eeEEeecc----CCccEEEEEe-CCCEEEEEECCCC------------CeEEeechhh
Confidence 44555665 7888999988 9999999999999 9999887644
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=61.96 E-value=2.3e+02 Score=32.65 Aligned_cols=261 Identities=11% Similarity=0.066 Sum_probs=120.6
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-c-----------eEEecc-CCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITA-L-----------RSLLRG-HTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDE 293 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~-~-----------~~~l~~-H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~ 293 (1395)
.....+.-..||.|+.|-.... + ...+.. ....+..+++ +......+.-..||.|+.|-....-.+
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i-~~G~~h~~al~~~G~v~~wG~n~~GqL 139 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAV-NSGGKHCLALSSEGEVYSWGEAEDGKL 139 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEE-CTTCSEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEE-CcCCCeEEEEcCCCCEEEEeCCCCCcC
Confidence 3445555567888888864431 0 111111 1223455566 445566677788999999975432100
Q ss_pred CCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEc
Q 039790 294 EDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVG 373 (1395)
Q Consensus 294 ~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~ 373 (1395)
-.-. .........+..-....+ +.+..-..+.++...++.++.|-....+....-.. .....+..+..
T Consensus 140 G~g~--~~~~~~p~~v~~l~~~~i--~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~--------~~~~~p~~v~~ 207 (389)
T 3kci_A 140 GHGN--RSPCDRPRVIESLRGIEV--VDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDS--------EDQLKPKLVEA 207 (389)
T ss_dssp CSSS--CCCEEEEEECGGGTTSCE--EEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSC--------CCEEEEEECGG
T ss_pred CCCC--CccCcCCeEecccCCCeE--EEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCC--------cccccceEecc
Confidence 0000 000111111111111122 33333445667777788888886544332100000 00011111111
Q ss_pred ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cc----------eeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 374 KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-ST----------PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 374 ~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~----------~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
-....|..++..... ...+.-..||.|..|-... ++ .-..+....+..|..|+.. .+. .++.
T Consensus 208 ~~~~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G----~~h-s~al- 280 (389)
T 3kci_A 208 LQGHRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG----SQF-SVAL- 280 (389)
T ss_dssp GTTSCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE----TTE-EEEE-
T ss_pred cCCCeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC----CCE-EEEE-
Confidence 123457777765422 4556667899999996432 11 1112222222257777775 222 2333
Q ss_pred ecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 039790 443 GPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~~ 519 (1395)
. .||.|..|=............... ..-..+..... ..++.++......++-..||.||.|=.+.
T Consensus 281 t-~~G~v~~wG~n~~GqLG~g~~~~~-~~P~~v~~l~~----------~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 281 T-KSGAVYTWGKGDYHRLGHGSDDHV-RRPRQVQGLQG----------KKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp E-TTSCEEEEECCGGGTTCSSSCCCE-EEEEECGGGTT----------CCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred e-CCCeEEEEeCCCCCCCCCCCCccc-cCCeEeccCCC----------CCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 3 799999997643211000000000 00011110000 11344555556666677899999997653
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.11 E-value=2e+02 Score=36.15 Aligned_cols=83 Identities=14% Similarity=0.086 Sum_probs=50.9
Q ss_pred CCCeEEEEEeCCeEEEEEcCCCCccc--cccCCCCCccCccccccceEEEcc-----cCCCeEEEEEecCCCcEEEEEeC
Q 039790 325 HKQEILMLAIGNRILKIDSNRVGKGE--RFSAEEPLKCPVDELINGVQLVGK-----HDGEITELSMCQWLTTRLASASL 397 (1395)
Q Consensus 325 ~~~~lla~g~~~~ii~~d~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~l~~-----h~~~V~slafspdg~~~LaSgs~ 397 (1395)
....++++-.+|+++++.....+... .|+... +. ...+++ +.+ ....|.++.+. . .+|++-+.
T Consensus 170 s~~~liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s-~l----~SL~~l--f~~~~~~~~~~~Is~~~~~--~-~fLftL~~ 239 (729)
T 3f7f_A 170 SPQFSVVFLEDGGLLGLKKVDGVHYEPLLFNDNS-YL----KCLTRF--FSRSSKSDYDSVISCKLFH--E-RYLIVLTQ 239 (729)
T ss_dssp SSSBEEEEETTSCEECCEESSSSCEECCCCCCCG-GG----GGGSTT--CCTTCSSCCCCEEEEEEET--T-TEEEEEET
T ss_pred CCCeEEEEEcCCCEEEEEeccCCCcceeeecCCc-hh----hhhHHh--hcCCCCCCcCceEEEeccC--C-cEEEEEEc
Confidence 34458888889999988765432211 111110 00 001111 111 22346665553 3 79999999
Q ss_pred CCcEEEEeCCCCceeEEecC
Q 039790 398 DGTVKIWDDRKSTPLAVLRP 417 (1395)
Q Consensus 398 Dg~IrIWDl~sg~~l~tl~~ 417 (1395)
|+++|+||+.+++++.+..-
T Consensus 240 Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 240 NCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TCEEEEEETTTTEEEEEEET
T ss_pred CCeEEEEEcCCCceEEeecc
Confidence 99999999999999988765
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.81 E-value=1.2e+02 Score=40.56 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=32.1
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceeEEec
Q 039790 378 EITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLR 416 (1395)
Q Consensus 378 ~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg~~l~tl~ 416 (1395)
.+.+++...+. .++++-+.|+++||||+.+++|+.+..
T Consensus 239 ~~vs~~~~~~~-~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTT-TEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCc-cEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566666766 799999999999999999999999865
No 366
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=58.68 E-value=2.6e+02 Score=32.25 Aligned_cols=160 Identities=8% Similarity=0.112 Sum_probs=82.7
Q ss_pred cCCCEEEEEEcCCeEEEEECCC---------Cc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 226 VNRNYICYGLKLGNIRILNIIT---------AL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~---------~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
++..++++.+.+|.|+--.+.. |. ...++ ..+.+..+.. ......|+..+..|.++.+....-...
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~-~~t~d~ll~fT~~G~~~~~~~~eip~~-- 80 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWL-VNTHDTLLTFTSSGKVFWLPVHQLPEA-- 80 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEE-ECTTCEEEEEETTSEEEEEEGGGSCBC--
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEE-ecCCCEEEEEeCCCeEEEEEHHHCcCC--
Confidence 5678899999999999764421 22 22333 3556666666 445567777888888776654321100
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEe--CCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE--E
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWH--PHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ--L 371 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~s--p~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~ 371 (1395)
.....|..+..+-.+...+..+..+.+. ..+.+++.++..|.+.+.......... ..++. .
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~---------------~~G~~ai~ 145 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL---------------ARGKIAIN 145 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC---------------TTCEESSC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc---------------CCceEEEE
Confidence 0000111100000011222222223332 134578888888988888764432110 01111 1
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDD 406 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl 406 (1395)
+.. .+.+..+.....+ ..|+..+.+|.+..|+.
T Consensus 146 L~~-~d~lv~v~~~~~~-~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 146 LDE-GDALVGVALTDGD-RDVLLFASNGKTVRFGE 178 (370)
T ss_dssp CCT-TCCEEEEEEECSC-CEEEEEETTSEEEEEEG
T ss_pred eCC-CCEEEEEEEeCCC-ceEEEEeCCCeEEEEEc
Confidence 222 3445445444433 56777788888777764
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=58.59 E-value=2.3e+02 Score=31.69 Aligned_cols=204 Identities=15% Similarity=0.116 Sum_probs=106.3
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCc--------e--EEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCC
Q 039790 226 VNRNYICYGLKLGNIRILNIITAL--------R--SLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEED 295 (1395)
Q Consensus 226 pdg~~LasGs~DG~IrIWd~~~~~--------~--~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~ 295 (1395)
++..+++..+.+|.|+-..+..-. . ..++. .+.+..+.. ......++..+..|.++......-....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~-~~~~~~ll~~T~~G~~~~~~~~~ip~~~- 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALC-VNTHDYLFMISNEGKLYLINAYEIKDSS- 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEE-EETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEE-ECCCCEEEEEECCCeEEEEEHHHCCCCC-
Confidence 456678888999999887654311 1 12233 344555555 3445678888899998877764321000
Q ss_pred CcccccceEE-EEEEecCCCCCccEEEEeC--CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE--
Q 039790 296 KPQILGKIVV-AIQILADGDSVHPRVCWHP--HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ-- 370 (1395)
Q Consensus 296 ~~~~~~~~i~-~l~~~~~~~~~v~~v~~sp--~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~-- 370 (1395)
....|..+. .+. +...+..+..+.... ...+++..+..|.+.+.......... ..+..
T Consensus 83 -r~~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r---------------~~G~~~i 145 (312)
T 1suu_A 83 -RASKGQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK---------------SRGVIVI 145 (312)
T ss_dssp ------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-------------------CEECB
T ss_pred -ccCCCcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC---------------CCcEEEE
Confidence 000000000 000 111122222222211 35578888888988888765432110 01111
Q ss_pred EEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 371 LVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-------STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 371 ~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
.+.. .+.+..+.....+ ..++..+.+|.+..+.+.. +.-+..++-..+..|.++... .++..|++.+
T Consensus 146 ~L~~-~d~lv~~~~~~~~-~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v----~~~~~l~~vt 219 (312)
T 1suu_A 146 KLND-KDFVTSAEIVFKD-EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSV----KENPYLLIVS 219 (312)
T ss_dssp CCCT-TCCEEEEEEECTT-CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEEC----TTCSEEEEEE
T ss_pred ecCC-CCEEEEEEEeCCC-CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEE----CCCCeEEEEE
Confidence 1222 4556666555434 5788888999988887542 112222222223367777664 4555666655
Q ss_pred cCCCeEEEEECCC
Q 039790 444 PLNRELKIWASAE 456 (1395)
Q Consensus 444 s~Dg~I~IWDl~t 456 (1395)
.+|.++..++..
T Consensus 220 -~~G~~kr~~~~e 231 (312)
T 1suu_A 220 -ENGYGKRLNMSK 231 (312)
T ss_dssp -TTSEEEEEEGGG
T ss_pred -CCCceEEEEHHH
Confidence 889999988854
No 368
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=51.31 E-value=3.3e+02 Score=31.30 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=86.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCC
Q 039790 268 EDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVG 347 (1395)
Q Consensus 268 ~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~ 347 (1395)
++..++++.+.+|.|+--.+..-.... -.+.-+..+.+ ..++.+..+........++.....|.++++......
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~----r~g~g~~~~~l--ke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip 78 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQR----RGGRGRSAAST--KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLP 78 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTC----CCCCCSEEEEC--SCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSC
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhc----cCCCCceeccc--CCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCc
Confidence 466789999999999976553311000 00011112222 223444455555566778888899999888765432
Q ss_pred ccccccCCCCCccCccccccceEEEcccCCCeEEEEEecC--CCcEEEEEeCCCcEEEEeCCC-------CceeEEecCC
Q 039790 348 KGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQW--LTTRLASASLDGTVKIWDDRK-------STPLAVLRPY 418 (1395)
Q Consensus 348 ~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspd--g~~~LaSgs~Dg~IrIWDl~s-------g~~l~tl~~h 418 (1395)
... +...+. ....+..+. ....|.++..-.+ ...+|+.++..|.+|...+.. |.....++.
T Consensus 79 ~~~-r~a~G~-------~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~- 148 (370)
T 3l6v_A 79 EAG-SNARGR-------PIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE- 148 (370)
T ss_dssp BCC-TTSCCE-------EGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-
T ss_pred CCC-cccCCc-------CHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-
Confidence 210 000000 000000122 2345555543321 225899999999999987532 222223332
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCC
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
+..+..+... .+...|+... .+|.+..++...
T Consensus 149 -~d~lv~v~~~----~~~~~i~l~T-~~G~~irf~~~~ 180 (370)
T 3l6v_A 149 -GDALVGVALT----DGDRDVLLFA-SNGKTVRFGEST 180 (370)
T ss_dssp -TCCEEEEEEE----CSCCEEEEEE-TTSEEEEEEGGG
T ss_pred -CCEEEEEEEe----CCCceEEEEe-CCCeEEEEEccc
Confidence 2356666655 3334444444 788887777643
No 369
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=45.89 E-value=19 Score=43.82 Aligned_cols=84 Identities=10% Similarity=-0.053 Sum_probs=53.6
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCC-cccccEEEEEeccCcccccccccccceEEEEeCCC
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSD-IESWKCTQTLELKSSAELRLEDAFFNQVVALNRAG 500 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~-~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg 500 (1395)
....|.++ |||++++++|..+.+|.++|+.....+....- ......+..... +.--.-..|..+|
T Consensus 324 sPHGv~vs----PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~----------GlGPlHt~Fd~~G 389 (638)
T 3sbq_A 324 NPHGCNTS----SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL----------GLGPLHTTFDGRG 389 (638)
T ss_dssp SCCCEEEC----TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC----------CSCEEEEEECSSS
T ss_pred CCcceeeC----CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC----------CCcccEEEECCCC
Confidence 45677887 99999999999999999999975311000000 000011112221 1112248899999
Q ss_pred CEEEEEeCCCeEEEEEcCC
Q 039790 501 LFLLANAKKNAIYAIHMDY 519 (1395)
Q Consensus 501 ~~LaSgs~Dg~I~iWdl~~ 519 (1395)
....+---|..|--|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 7767777899999999975
No 370
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=45.69 E-value=2.8e+02 Score=32.92 Aligned_cols=120 Identities=9% Similarity=0.070 Sum_probs=64.3
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC---ceeEEec-----C----CCCCCeeEEEEeecCCCC----CcEEE
Q 039790 377 GEITELSMCQWLTTRLASASLDGTVKIWDDRKS---TPLAVLR-----P----YDGHPVNCVTFLIGPHPQ----HIVLI 440 (1395)
Q Consensus 377 ~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg---~~l~tl~-----~----h~~~~V~sV~fs~~~~pd----g~~L~ 440 (1395)
..-+.|+|.|+|..+|+.+...|.|++++.... ..+..+. + ..+ ....|+|. |+ +.+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~-Gllgia~~----P~f~~n~~lYv 88 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDER-GLLSLAFH----PNYKKNGKLYV 88 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCC-SEEEEEEC----TTHHHHCEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCC-cceeeEeC----CCCcCCCEEEE
Confidence 456899999998324555567899999975322 2233332 1 123 68899998 75 44333
Q ss_pred EEec-CC----------CeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeCCCCEEEEEeCC
Q 039790 441 TGGP-LN----------RELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNRAGLFLLANAKK 509 (1395)
Q Consensus 441 s~Gs-~D----------g~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~dg~~LaSgs~D 509 (1395)
+-.. .+ ..|.-|.+..+... ..+....+.+..+.... ..++...+.|.+||.+.++.+..
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~--~~d~~~~~~i~~~~~~~-------~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPH--QVDLRTARVFLEVAELH-------RKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTT--SBCGGGCEEEEEEEESS-------SSSCEEEEEECTTSCEEEEECCT
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCC--ccCCCCceEEEEcCCCC-------CcccCCcEeECCCCcEEEEeCCC
Confidence 3221 11 13444555432100 01112233444333111 12344579999999988887765
Q ss_pred C
Q 039790 510 N 510 (1395)
Q Consensus 510 g 510 (1395)
+
T Consensus 160 ~ 160 (463)
T 2wg3_C 160 M 160 (463)
T ss_dssp T
T ss_pred C
Confidence 4
No 371
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=44.78 E-value=1.4e+02 Score=33.67 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=20.0
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHH
Q 039790 967 MSQLL-AMQDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRL 1006 (1395)
Q Consensus 967 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~~l 1006 (1395)
+.++. .|.+-+.++...-+++++|| ....+.|+++.+
T Consensus 34 ~e~v~~~fwdY~~~~~~~a~~~~eql---~~s~l~kel~~l 71 (307)
T 2l7b_A 34 WELALGRFWDYLRWVQTLSEQVQEEL---LSSQVTQELRAL 71 (307)
T ss_dssp HHHHHHHHHHHHHHTCCCSTHHHHHT---TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34444 55666666666556666555 234555554443
No 372
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=44.31 E-value=2.8e+02 Score=28.45 Aligned_cols=16 Identities=0% Similarity=0.092 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 039790 973 MQDMLNQMMSTQKEIQ 988 (1395)
Q Consensus 973 ~~~~~~~~~~~~~~~~ 988 (1395)
|-+-+.||...-++..
T Consensus 16 ~w~Y~~~l~~~a~~~v 31 (185)
T 3r2p_A 16 ATVYVDVLKDSGRDYV 31 (185)
T ss_dssp HHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555544444433
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=43.87 E-value=3.9e+02 Score=30.04 Aligned_cols=210 Identities=13% Similarity=0.098 Sum_probs=109.8
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEE---CCCC------c----eEEeccCCCCeEEEEEeeC--CCCEEEEEECCCc
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILN---IITA------L----RSLLRGHTQRVTDMAFFAE--DVHLLASASVDGR 281 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd---~~~~------~----~~~l~~H~~~V~slaf~s~--dg~~LaSgs~Dgt 281 (1395)
+.+..+.......+|+.-+..|.++-.. +... . +..+. ....|..+..... +..+++.++.+|.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 3444444444555666666677666544 3221 1 11122 3455666544232 4789999999999
Q ss_pred EEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcC--CCCccccccCCCCCc
Q 039790 282 FFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSN--RVGKGERFSAEEPLK 359 (1395)
Q Consensus 282 V~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~--~~~~~~~~s~~~~~~ 359 (1395)
|+-..+..-.... ..-+..+.+. . ++.+..+........+++.+..+.++++... .....
T Consensus 121 iKr~~l~~~~~~~------r~G~~~i~lk-e-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~---------- 182 (327)
T 3uc1_A 121 VKKSKLTDFDSNR------SGGIVAVNLR-D-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPM---------- 182 (327)
T ss_dssp EEEEEGGGGCCCC------SSCEESCBCC-T-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCC----------
T ss_pred EEEeEHHHhhccc------cCceEEEEEC-C-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcC----------
Confidence 9999877533110 0011111211 2 2333344444555688999999999998775 33210
Q ss_pred cCccccccceEEEc-ccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------CceeEEec--CCCCCCeeEEEEe
Q 039790 360 CPVDELINGVQLVG-KHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-------STPLAVLR--PYDGHPVNCVTFL 429 (1395)
Q Consensus 360 ~~~~~~~~~~~~l~-~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-------g~~l~tl~--~h~~~~V~sV~fs 429 (1395)
.....+...+. ...+.|.++.....+ .+|+..+..|.++.-.+.. ++-+..++ ...+ .+..+...
T Consensus 183 ---gr~a~Gv~~i~L~~~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d-~lv~~~~~ 257 (327)
T 3uc1_A 183 ---GRATSGVQGMRFNIDDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRG-RLVGALIV 257 (327)
T ss_dssp ---CTTSBCEESSCCCTTCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTC-SEEEEEEE
T ss_pred ---CcCCCCeeeecCCCCCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCC-eEEEEEEe
Confidence 00111121111 134567766665555 6889999999999887532 12233232 2123 45555443
Q ss_pred ecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 430 IGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 430 ~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.+...++... .+|.+.-++..
T Consensus 258 ----~~~~~i~l~T-~~G~~ir~~~~ 278 (327)
T 3uc1_A 258 ----DDDSELYAVT-SGGGVIRTAAR 278 (327)
T ss_dssp ----CTTCEEEEEE-GGGCEEEEEGG
T ss_pred ----CCCccEEEEc-CCCeEEEEehh
Confidence 2333333334 56766666654
No 374
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=42.98 E-value=4.1e+02 Score=29.93 Aligned_cols=199 Identities=11% Similarity=0.095 Sum_probs=100.1
Q ss_pred CEEEEEEcCCeEEEEECCC---------Cc-eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEE---CCCCCCCCC
Q 039790 229 NYICYGLKLGNIRILNIIT---------AL-RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWN---ITEGPDEED 295 (1395)
Q Consensus 229 ~~LasGs~DG~IrIWd~~~---------~~-~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWd---l~tg~~~~~ 295 (1395)
.++++-+.+|.|+--.+.+ |. -..++ ..+.+..+.. ......|+.-+..|.++... +.....
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~-~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r--- 78 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFV-CSTHDLILFFTTQGRVYRAKAYDLPEASR--- 78 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEE-EETTSEEEEEETTSEEEEEEGGGSCBCCS---
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEE-eCCCCEEEEEeCCCeEEEEEHHHCcCCCc---
Confidence 4567778888887655322 11 11222 3345555555 34455666677778766554 333210
Q ss_pred CcccccceEEEEEEecCCCCCccEEEEeC--CCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceE--E
Q 039790 296 KPQILGKIVVAIQILADGDSVHPRVCWHP--HKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQ--L 371 (1395)
Q Consensus 296 ~~~~~~~~i~~l~~~~~~~~~v~~v~~sp--~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~ 371 (1395)
...|..+..+--+...+..+..+.+.. +...++.++..|.+.+.......... ..+.. .
T Consensus 79 --~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~---------------r~G~~~i~ 141 (327)
T 3uc1_A 79 --TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNR---------------SGGIVAVN 141 (327)
T ss_dssp --SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCC---------------SSCEESCB
T ss_pred --cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccc---------------cCceEEEE
Confidence 001111000000112222222333332 45678888889999988765432110 01111 1
Q ss_pred EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--C----Cc---eeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 372 VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDR--K----ST---PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 372 l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~--s----g~---~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
+.. .+.+..+...... ..|+..+..|.+..+.+. . ++ -+.-+.-..+..|.++... .++.+|+..
T Consensus 142 lke-~D~lv~~~~~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~----~~~~~ll~~ 215 (327)
T 3uc1_A 142 LRD-NDELVGAVLCSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVV----REGTYLLVA 215 (327)
T ss_dssp CCT-TCCEEEEEEECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEEC----CTTCEEEEE
T ss_pred ECC-CCEEEEEEEecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEE----CCCCEEEEE
Confidence 222 3445555444444 567777888887777655 2 11 1111222223367777765 455566665
Q ss_pred ecCCCeEEEEECCC
Q 039790 443 GPLNRELKIWASAE 456 (1395)
Q Consensus 443 Gs~Dg~I~IWDl~t 456 (1395)
. .+|.++.-.+..
T Consensus 216 T-~~G~~Krt~l~e 228 (327)
T 3uc1_A 216 T-SGGYAKRTAIEE 228 (327)
T ss_dssp E-TTSEEEEEEGGG
T ss_pred e-CCCcEEEEEHHH
Confidence 6 899999887754
No 375
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=40.63 E-value=6.7e+02 Score=31.80 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=35.1
Q ss_pred CCEEEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEeccC-------CCCeEEEEEeeCCCCEEEEEE
Q 039790 217 GLVLGRQIAVN-RNYICYGLKLGNIRILNIITALRSLLRGH-------TQRVTDMAFFAEDVHLLASAS 277 (1395)
Q Consensus 217 ~~V~~va~Spd-g~~LasGs~DG~IrIWd~~~~~~~~l~~H-------~~~V~slaf~s~dg~~LaSgs 277 (1395)
+.|.+++++|. ...+..+...|.|...+=....-..+..+ ...|.+|++.+.+.+.++.+.
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 68999999985 45566667667665554322222222221 246999999433444454444
No 376
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=40.24 E-value=1.4e+02 Score=27.32 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhcc--chH-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 039790 1160 AMFEQIDSTFQKGLIKHTT---AIQQQFETAH--SPM-AIALRDAIN-------SATSITQTLSGELADGQRKLLAM 1223 (1395)
Q Consensus 1160 ~m~~qv~~~~~~~~~e~~~---~~q~~~~~~~--~~l-~~~L~~~i~-------~~~~~~~~~~~e~~~~~~~~~~~ 1223 (1395)
.-|.++..+|++.+..|.+ ++.+.+.+.- ..+ -..|..+++ ++|+-.+++.+++..++.+.+..
T Consensus 8 ~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 8 DYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999988777 4444433311 000 123333333 45666667777777776666554
No 377
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=39.00 E-value=5e+02 Score=29.87 Aligned_cols=213 Identities=14% Similarity=0.118 Sum_probs=102.1
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCC-Cc-------------eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEEC-
Q 039790 223 QIAVNRNYICYGLKLGNIRILNIIT-AL-------------RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNI- 287 (1395)
Q Consensus 223 a~Spdg~~LasGs~DG~IrIWd~~~-~~-------------~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl- 287 (1395)
.++..+.+.+.-..||.|+.|-... ++ ...+. ....|..|+. .....+.-..||.|+.|-.
T Consensus 79 ~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~---G~~hs~al~~~G~v~~wG~~ 154 (423)
T 3mvd_K 79 DISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISA---GDSHSACLLEDGRVFAWGSF 154 (423)
T ss_dssp EEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEE---CSSEEEEEETTSCEEEEECE
T ss_pred EEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEc---CcCeEEEEeCCCeEEEEeCC
Confidence 3444556666667889999886543 11 01111 2345777776 3345556678999999986
Q ss_pred -CC-CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCC---CCCccCc
Q 039790 288 -TE-GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAE---EPLKCPV 362 (1395)
Q Consensus 288 -~t-g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~---~~~~~~~ 362 (1395)
.. +..-.. ........+.+ .....+..| ..-..+.++...++.++.|-....+....-... .......
T Consensus 155 ~n~~GqlG~~---~~~~~~~p~~~--~~~~~i~~v--a~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~ 227 (423)
T 3mvd_K 155 RDSHGNMGLT---IDGNKRTPIDL--MEGTVCCSI--ASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGK 227 (423)
T ss_dssp ECSSSEEESB---TTBCEEEEEES--STTCCEEEE--EECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTT
T ss_pred CCCCCCcCcC---CCCCCceeeEe--cCCCcEEEE--ecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccc
Confidence 22 210000 00001111111 112223333 334446777778888888866544332110000 0000000
Q ss_pred cccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-----------ceeEEecCCCCCCeeEEEEeec
Q 039790 363 DELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-----------TPLAVLRPYDGHPVNCVTFLIG 431 (1395)
Q Consensus 363 ~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-----------~~l~tl~~h~~~~V~sV~fs~~ 431 (1395)
.....+..+.......|..|+.... ..++.-..||.|..|-.... ....-...... .|..|+.-
T Consensus 228 ~~~~~p~~v~~~~~~~v~~i~~g~~--~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~-~v~~ia~G-- 302 (423)
T 3mvd_K 228 RDLLRPTQLIITRAKPFEAIWATNY--CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK-DIRHIAGG-- 302 (423)
T ss_dssp TTTSSCEEECCTTCCCEEEEEEETT--EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCC-SEEEEEEC--
T ss_pred ccccCCeEEeecCCccEEEEEECCc--EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCC-CeEEEEcc--
Confidence 1112222332223446777776543 34444468999999964321 01111111122 57777764
Q ss_pred CCCCCcEEEEEecCCCeEEEEECCC
Q 039790 432 PHPQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 432 ~~pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
....++. . .||.|..|=...
T Consensus 303 ---~~ht~al-t-~~G~v~~wG~n~ 322 (423)
T 3mvd_K 303 ---QHHTVIL-T-TDLKCSVVGRPE 322 (423)
T ss_dssp ---SSEEEEE-E-TTCCEEEEECCG
T ss_pred ---cCeEEEE-e-CCCcEEEEECCC
Confidence 2223333 3 799999997543
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=38.78 E-value=1.2e+02 Score=38.33 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=30.2
Q ss_pred CeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEec
Q 039790 422 PVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLEL 477 (1395)
Q Consensus 422 ~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~ 477 (1395)
.|.++.+ +..+|++.+ .|+++|+||++++ .|+.+...
T Consensus 223 ~Is~~~~------~~~fLftL~-~Dh~LRiWsL~t~------------~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF------HERYLIVLT-QNCHLKIWDLTSF------------TLIQDYDM 259 (729)
T ss_dssp EEEEEEE------TTTEEEEEE-TTCEEEEEETTTT------------EEEEEEET
T ss_pred eEEEecc------CCcEEEEEE-cCCeEEEEEcCCC------------ceEEeecc
Confidence 3555555 467888888 9999999999999 88888877
No 379
>3l1n_A MP1P, cell WALL antigen; helix-turn-helix, protein-ligand complex, lipid binding PROT; HET: PLM; 1.30A {Penicillium marneffei}
Probab=38.51 E-value=3.5e+02 Score=28.13 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 1139 QDALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKH 1176 (1395)
Q Consensus 1139 ~~~~~~~~~~~liP~fe~~~~~m~~qv~~~~~~~~~e~ 1176 (1395)
-+.|.+++.+.+.+.|...++.+..+|...|++++..|
T Consensus 157 s~~Ls~AvvsKVP~~~~~iA~~l~~~I~~a~~~aI~aY 194 (194)
T 3l1n_A 157 AQKLSELVSTKVPHELADISRQLSDGIAAGIKKGIDAF 194 (194)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34578889999999999999999999999999998753
No 380
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.64 E-value=2.7e+02 Score=31.75 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHhhhhchhhHHH
Q 039790 1134 GKQALQDALRSNLETSIIPAFEM 1156 (1395)
Q Consensus 1134 v~~~i~~~~~~~~~~~liP~fe~ 1156 (1395)
+.|++...|.-.+.-..+|.+..
T Consensus 188 L~qv~a~~llP~~~~q~lp~LK~ 210 (390)
T 1deq_A 188 LEQVIAINLLPSRDIQYLPILKM 210 (390)
T ss_pred HHhhhhhcccccccccccccccc
Confidence 34444444444444444554443
No 381
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=37.31 E-value=5e+02 Score=29.39 Aligned_cols=28 Identities=0% Similarity=-0.257 Sum_probs=19.3
Q ss_pred CccEEEEeCC--CCeEEEEEeCCeEEEEEc
Q 039790 316 VHPRVCWHPH--KQEILMLAIGNRILKIDS 343 (1395)
Q Consensus 316 ~v~~v~~sp~--~~~lla~g~~~~ii~~d~ 343 (1395)
.+..+++.+. .+.+++++..+.+++..+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D 145 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTD 145 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESS
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcC
Confidence 3556778763 567888777888777654
No 382
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=37.13 E-value=3.2e+02 Score=31.93 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHH
Q 039790 1002 EGKRLEASLGRSIEK 1016 (1395)
Q Consensus 1002 e~~~lE~~l~~~~~~ 1016 (1395)
.+-+-|..+.++|++
T Consensus 55 lL~kqerdv~~rI~k 69 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDN 69 (491)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHH
Confidence 455566666666655
No 383
>4a1q_A ORF E73; viral protein, extremophIle, archaea, ribbon-helix-helix Pro DNA-binding proteins; NMR {Sulfolobus virus ragged hills} PDB: 4aai_A
Probab=35.09 E-value=22 Score=28.87 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHH
Q 039790 1043 RMQQITNLITNTINKDLPAILEKTLKK 1069 (1395)
Q Consensus 1043 rq~~ll~~vs~~l~~~~~~~~E~~l~~ 1069 (1395)
---++|.+||-+||+++++.+|..+-.
T Consensus 19 dvy~~lklvsvylnrdmteiieeavvm 45 (73)
T 4a1q_A 19 DVYHTLKLVSVYLNRDMTEIIEEAVVM 45 (73)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 345789999999999999999987543
No 384
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=35.04 E-value=5.1e+02 Score=28.74 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=100.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc----------eEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCC
Q 039790 227 NRNYICYGLKLGNIRILNIITAL----------RSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDK 296 (1395)
Q Consensus 227 dg~~LasGs~DG~IrIWd~~~~~----------~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~ 296 (1395)
+..++++.+.+|.|+--.+..-. ...++.+ +.+..+.. ....+.|+..+..|.++.+....-....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~-~~~~~~ll~fT~~G~~~~~~~~elp~~~-- 77 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLV-ANTHDHILCFSSRGRVYSMKVYQLPEAT-- 77 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEE-EETTCEEEEEETTSEEEEEEGGGSCCCC--
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEE-ECCCCEEEEEECCCEEEEEEhhHCcCCC--
Confidence 45678888899998776654311 1122333 34444444 3345667777888987766654311000
Q ss_pred cccccceEE-EEEEecCCCCCccEE-EEe--CCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE-
Q 039790 297 PQILGKIVV-AIQILADGDSVHPRV-CWH--PHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL- 371 (1395)
Q Consensus 297 ~~~~~~~i~-~l~~~~~~~~~v~~v-~~s--p~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~- 371 (1395)
....|..+. .+. +.. +..+..+ ... .++.+++.++..|.+.+.......... ..+...
T Consensus 78 ~~a~G~~i~~~l~-l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~---------------r~G~~~i 140 (307)
T 1zi0_A 78 RGARGRPIVNLLP-LEQ-DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR---------------TAGKVAI 140 (307)
T ss_dssp SSSCCEEGGGTSC-CCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC---------------TTCEESS
T ss_pred CCCCCeEhhhccC-CCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc---------------cCCeEEE
Confidence 000111100 001 111 2223233 221 244568888888999888764322110 011111
Q ss_pred -EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 372 -VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-------STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 372 -l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+..+ +.+..+...... ..|+..+.+|.+..++... ..-+.-+.-..+..|.++... .++..|++..
T Consensus 141 ~l~~~-d~lv~~~~~~~~-~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~----~~~~~ll~~T 214 (307)
T 1zi0_A 141 KLVDG-DELIGVDLTSGE-DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP----RGDGAILTAT 214 (307)
T ss_dssp CCCTT-CCEEEEEEECTT-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECC----CSSCEEEEEE
T ss_pred EECCC-CEEEEEEEeCCC-CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEe----cCCCEEEEEE
Confidence 2223 445555444433 4677778888877776532 112222222233367777654 4455566655
Q ss_pred cCCCeEEEEECCC
Q 039790 444 PLNRELKIWASAE 456 (1395)
Q Consensus 444 s~Dg~I~IWDl~t 456 (1395)
..|.++-+++..
T Consensus 215 -~~G~~Kr~~~~e 226 (307)
T 1zi0_A 215 -QNGYGKRTAVAE 226 (307)
T ss_dssp -TTSEEEEECGGG
T ss_pred -cCCceEEEEHHH
Confidence 889999888743
No 385
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=33.72 E-value=5e+02 Score=28.27 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=82.1
Q ss_pred CCeEEEEECCC-CceEEeccCCCCeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCC
Q 039790 237 LGNIRILNIIT-ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDS 315 (1395)
Q Consensus 237 DG~IrIWd~~~-~~~~~l~~H~~~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~ 315 (1395)
||.|+.|-... +++-.-..-...|..|+. ..+ ..+.-. ||.|+.|-........ .+... ..
T Consensus 80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~-G~~--hs~al~-~G~v~~wG~n~~gqlg-~~~~~-------------~~ 141 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAA-GAW--ASYALK-DGKVIAWGDDSDGQTT-VPAEA-------------QS 141 (282)
T ss_dssp TTEEEEEECCTTSTTCCCGGGSSSEEEEEE-ETT--EEEEEE-TTEEEEEECCTTSTTS-CCGGG-------------GS
T ss_pred CCEEEEeeCCCCCCCCCCcccCCCeEEEEC-cCC--EEEEEe-CCeEEEecCCCCCcCC-CCccC-------------CC
Confidence 89999997654 222111111346888887 333 333334 9999999876532111 00000 11
Q ss_pred CccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEE
Q 039790 316 VHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASA 395 (1395)
Q Consensus 316 ~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSg 395 (1395)
.+..++. -..+.++.. ++.++.|-....+... .+ ..-...|..|+...+. .++.
T Consensus 142 ~i~~i~~--G~~~~~~l~-~G~v~~wG~n~~gqlg-----~p---------------~~~~~~v~~i~~G~~h--s~al- 195 (282)
T 3qhy_B 142 GVTALDG--GVYTALAVK-NGGVIAWGDNYFGQTT-----VP---------------AEAQSGVDDVAGGIFH--SLAL- 195 (282)
T ss_dssp SEEEEEE--CSSEEEEEE-TTEEEEEECCTTSTTS-----CC---------------GGGGSSEEEEEECSSE--EEEE-
T ss_pred CeEEEEc--ccCEEEEEE-CCEEEEecCCCCCCCC-----Cc---------------eecCCCeEEEEecCCE--EEEE-
Confidence 1222222 222344444 6777777654433210 00 0012457777776543 4444
Q ss_pred eCCCcEEEEeCCCCceeE-EecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECC
Q 039790 396 SLDGTVKIWDDRKSTPLA-VLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASA 455 (1395)
Q Consensus 396 s~Dg~IrIWDl~sg~~l~-tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~ 455 (1395)
.||.|..|-....-.+. -.... . .|..|+.. ....++. . ||.|..|-..
T Consensus 196 -~~G~v~~wG~n~~gqlg~p~~~~-~-~v~~i~~G-----~~h~~al--~-~g~v~~wG~n 245 (282)
T 3qhy_B 196 -KDGKVIAWGDNRYKQTTVPTEAL-S-GVSAIASG-----EWYSLAL--K-NGKVIAWGSS 245 (282)
T ss_dssp -ETTEEEEEECCTTSTTCCCGGGG-S-SCCEEEEC-----SSCEEEE--E-TTEEEEESTT
T ss_pred -ECCeEEEEECCCCCCCCCCcccC-C-CceEEEcC-----CCEEEEE--E-CCEEEEecCC
Confidence 59999999754421111 01111 2 57777764 3334443 2 8999999654
No 386
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.23 E-value=3e+02 Score=32.51 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHhhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 1164 QIDSTFQKGLIKHTTAI---QQQFETAH---SPMAIALRDAINSATSITQTLSGELADGQRKLLAM 1223 (1395)
Q Consensus 1164 qv~~~~~~~~~e~~~~~---q~~~~~~~---~~l~~~L~~~i~~~~~~~~~~~~e~~~~~~~~~~~ 1223 (1395)
.+...|+|++.++-+.. +.|..... ..|...|+.-++....-.+.+.+|+.++.++|...
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655532 22322222 12223333333322233445666666666666544
No 387
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=29.20 E-value=7.8e+02 Score=29.11 Aligned_cols=161 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 969 QLLAMQDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKANSDALWARFQEENAKHEKLERDRMQQIT 1048 (1395)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~~lE~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~rq~~ll 1048 (1395)
|+..+...|+.+..+-++-.++|..+.. .|.|| .++-+.--++|-+.+..++++| +++-+.+|+--+-
T Consensus 147 q~~~LekAl~s~~~i~~~e~~~l~~L~~-AL~kE-~~~Rt~dE~~mi~~yr~k~~aL----------~~aIe~Er~~~~E 214 (526)
T 3iyk_A 147 QFDILNKAVTSYNKILTEEDLQMRRLAT-ALQKE-IGERTHAETVMVKEYRDKIDAL----------KNAIEVERDGMQE 214 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHH-HHhhcHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHH
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHhhHHHHHHhhHH--------HHHHH-----------------HHHHHHHHhh---
Q 039790 1049 NLITNTINKDLPAILEKTLKKEIAAVGPAVARAISPT--------LEKSI-----------------SSAIMESFQK--- 1100 (1395)
Q Consensus 1049 ~~vs~~l~~~~~~~~E~~l~~ei~~v~P~i~~~~~~~--------v~~~l-----------------~~~v~~~l~~--- 1100 (1395)
..|.+++ ++..-+-.....||=-|+-.++..+..+ |++.| ...|..-|..
T Consensus 215 EAIqe~~--dmsaeI~E~AaeEVP~vGag~At~iATaRaieg~yKLkkvI~aLtGidlsHl~~P~I~p~~iet~L~~~~~ 292 (526)
T 3iyk_A 215 EAIQEIA--GMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAK 292 (526)
T ss_pred HHHHHHh--cchHHHHHHHhhhCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhccCCCCCHHHHHHHHhCCCC
Q ss_pred chhHHHHHHHHHHHhHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHhhhhchhhHHHHHHHHHH
Q 039790 1101 GVGEKAVSQLEKSVSSKLET--TVARQIQAQFQTSGKQALQDALRSNLETSIIPAFEMSCKAMFE 1163 (1395)
Q Consensus 1101 ~v~~~~~~~l~~~v~~~l~~--~v~~~i~~~~~~~v~~~i~~~~~~~~~~~liP~fe~~~~~m~~ 1163 (1395)
.+++ +.|-..+..+++. .+.+.+ +-+.+.|+|.|++.|+..-+
T Consensus 293 ~i~D---~~L~~~v~sK~~~v~E~~~Ev-----------------~Hi~~~i~P~~kk~~~~~~~ 337 (526)
T 3iyk_A 293 EIPD---NALAVSVLSKNRAIQENHKEL-----------------MHIKNEILPRFKKAMDEEKE 337 (526)
T ss_pred CCCH---HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
No 388
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=28.90 E-value=6e+02 Score=27.68 Aligned_cols=208 Identities=13% Similarity=0.076 Sum_probs=111.2
Q ss_pred CCEEEEEEecCCCEEEEEEcCCeEEEEEC---CCCceEEeccCCCCeEEEEEeeC-CCCEEEEEECCCcEEEEECCCCCC
Q 039790 217 GLVLGRQIAVNRNYICYGLKLGNIRILNI---ITALRSLLRGHTQRVTDMAFFAE-DVHLLASASVDGRFFIWNITEGPD 292 (1395)
Q Consensus 217 ~~V~~va~Spdg~~LasGs~DG~IrIWd~---~~~~~~~l~~H~~~V~slaf~s~-dg~~LaSgs~DgtV~IWdl~tg~~ 292 (1395)
+.+..+.......+|+.-+.+|.++-..+ ..+....+......|..+.. .. +..+++.++.+|.|+...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~- 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE- 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT-
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh-
Confidence 44555544444556666677787765433 22211112223566777743 22 46799999999999999876532
Q ss_pred CCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccceEE-
Q 039790 293 EEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGVQL- 371 (1395)
Q Consensus 293 ~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~- 371 (1395)
.. -.+ +..+.+ .. ++.+..+........+++.+..+.++++........ .....+...
T Consensus 102 ~~----~~G--~~~i~l-ke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~-------------gR~a~Gv~~i 160 (276)
T 3no0_A 102 YK----AQG--MPIIKL-TE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPS-------------TPGARGVQGI 160 (276)
T ss_dssp TC----STT--EECSCC-CT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBC-------------CTTCCCEECC
T ss_pred hh----cCC--eEEEec-CC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCc-------------CCCCCCEEEE
Confidence 00 001 111111 11 233334444445567889999999999876543221 000111111
Q ss_pred -EcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------CceeEEecCCCCCCeeEEEEeecCCCCCcEEEEEe
Q 039790 372 -VGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-------STPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGG 443 (1395)
Q Consensus 372 -l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-------g~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~G 443 (1395)
+. ..+.|..+....++ ..|+..+..|.++...+.. ++-+..+ ...+ .+..+... .+...++...
T Consensus 161 ~L~-~~d~vv~~~~~~~~-~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~-~lv~~~~~----~~~~~i~~~t 232 (276)
T 3no0_A 161 KLE-KNDETSGLRIWNGE-PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKD-TLVDLIPI----KEEVELLITT 232 (276)
T ss_dssp CCC-TTCCEEEEEEESSC-SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSS-CEEEEEEE----SSEEEEEEEE
T ss_pred ccC-CCCEEEEEEEeCCC-CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCC-cEEEEEEe----CCCCEEEEEc
Confidence 22 23456666555554 6888889999999987532 2333334 2223 55555443 2333444434
Q ss_pred cCCCeEEE--EECCC
Q 039790 444 PLNRELKI--WASAE 456 (1395)
Q Consensus 444 s~Dg~I~I--WDl~t 456 (1395)
.+|.+.. ++...
T Consensus 233 -~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 233 -KNGKAFYDKINQKD 246 (276)
T ss_dssp -TTSCEEEEEEEGGG
T ss_pred -CCCeEEEeeeCHHH
Confidence 6777766 76543
No 389
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=28.82 E-value=4.3e+02 Score=27.93 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 039790 1029 FQEENAKHEKLERDR 1043 (1395)
Q Consensus 1029 ~~~~~~~~~~~~~~r 1043 (1395)
+++.|..+-++..+|
T Consensus 93 ln~~r~~~i~~lk~~ 107 (214)
T 2cly_A 93 LEEVKQASIKQIQDA 107 (214)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 390
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=28.14 E-value=7.2e+02 Score=28.42 Aligned_cols=207 Identities=9% Similarity=0.036 Sum_probs=97.4
Q ss_pred EecCCCEEEEEEcCCeEEEEECCC-Cc-----------eEEecc-CCCCeEEEEEeeCCCCEEEEEECC-CcEEEEECCC
Q 039790 224 IAVNRNYICYGLKLGNIRILNIIT-AL-----------RSLLRG-HTQRVTDMAFFAEDVHLLASASVD-GRFFIWNITE 289 (1395)
Q Consensus 224 ~Spdg~~LasGs~DG~IrIWd~~~-~~-----------~~~l~~-H~~~V~slaf~s~dg~~LaSgs~D-gtV~IWdl~t 289 (1395)
++.-+.+.+.-..||.|+.|=... ++ ...+.. ....|..|+. .....+.-..| +.|+.|-...
T Consensus 21 ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~---G~~ht~al~~~gg~v~~wG~n~ 97 (406)
T 4d9s_A 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC---GADHTVAYSQSGMEVYSWGWGD 97 (406)
T ss_dssp EEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTTTEEEEEECCG
T ss_pred EecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEe---CcceEEEEECCCCEEEEEcCCC
Confidence 334444555556788888886543 11 111111 1236777776 23333434455 5999997543
Q ss_pred CCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccccccce
Q 039790 290 GPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDELINGV 369 (1395)
Q Consensus 290 g~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~ 369 (1395)
.-.+-.- ..........+..-....+..| ..-..+.++...++.++.|-....+....-.. .....+
T Consensus 98 ~GqLG~g--~~~~~~~p~~v~~l~~~~i~~i--a~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~--------~~~~~p- 164 (406)
T 4d9s_A 98 FGRLGHG--NSSDLFTPLPIKALHGIRIKQI--ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT--------EDSLVP- 164 (406)
T ss_dssp GGTTCSS--SCCCEEEEEECGGGTTCCEEEE--EECSSEEEEEETTSCEEEEECCTTSTTCSSSC--------CCEEEE-
T ss_pred CcCCCCC--CCCccccceEecccCCCCEEEE--EEChhheEEEcCCCcEEEeCCCCCccCCCCCC--------CCcccc-
Confidence 2100000 0001111111111112233333 33445677777888888886654432110000 000011
Q ss_pred EEEcc-cCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-Cc----------eeEEecCCCCCCeeEEEEeecCCCCCc
Q 039790 370 QLVGK-HDGEITELSMCQWLTTRLASASLDGTVKIWDDRK-ST----------PLAVLRPYDGHPVNCVTFLIGPHPQHI 437 (1395)
Q Consensus 370 ~~l~~-h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~s-g~----------~l~tl~~h~~~~V~sV~fs~~~~pdg~ 437 (1395)
..+.. ....|..|+... ...+.-..||.|..|-... ++ .-..+....+..|..|+.. ...
T Consensus 165 ~~v~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G-----~~h 236 (406)
T 4d9s_A 165 QKIQAFEGIRIKMVAAGA---EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG-----WRH 236 (406)
T ss_dssp EECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC-----SSE
T ss_pred eEecccCCCcEEEEecCC---CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC-----CCc
Confidence 11111 223577777654 4555567899999996432 11 0111222222357777764 222
Q ss_pred EEEEEecCCCeEEEEECCC
Q 039790 438 VLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 438 ~L~s~Gs~Dg~I~IWDl~t 456 (1395)
.++. . .||.|+.|-...
T Consensus 237 t~~l-~-~~G~v~~wG~n~ 253 (406)
T 4d9s_A 237 TISV-S-YSGALYTYGWSK 253 (406)
T ss_dssp EEEE-E-TTCCEEEEECCT
T ss_pred EEEE-c-CCCCEEEeeCCC
Confidence 3333 3 799999997644
No 391
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=26.24 E-value=2.1e+02 Score=32.13 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=3.8
Q ss_pred hHHHHHHHHH
Q 039790 1002 EGKRLEASLG 1011 (1395)
Q Consensus 1002 e~~~lE~~l~ 1011 (1395)
+...|...|.
T Consensus 104 ~~~~Lr~~L~ 113 (307)
T 2l7b_A 104 ELQAAQARLG 113 (307)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3333334433
No 392
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=25.94 E-value=1.3e+02 Score=37.13 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=44.3
Q ss_pred eEEEEEecCCCcEEEEEeCC------------CcEEEEeCCCCceeEEecCCCCCCeeEEEEeecCCCCCcEEEEE
Q 039790 379 ITELSMCQWLTTRLASASLD------------GTVKIWDDRKSTPLAVLRPYDGHPVNCVTFLIGPHPQHIVLITG 442 (1395)
Q Consensus 379 V~slafspdg~~~LaSgs~D------------g~IrIWDl~sg~~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~ 442 (1395)
.--|+|+++| ++++.-..+ ..+.+.+..+++..+.+.++.+..++.++|+ ||++.|++.
T Consensus 478 PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fs----pDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS----PDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC----TTSSEEEEE
T ss_pred CcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeEC----CCCCEEEEE
Confidence 4568999998 555544322 2355667778888888888877799999999 999988874
No 393
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=24.96 E-value=6.2e+02 Score=26.55 Aligned_cols=20 Identities=5% Similarity=0.122 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039790 972 AMQDMLNQMMSTQKEIQKQM 991 (1395)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~ 991 (1395)
.|-+-+.||...-++..++|
T Consensus 13 ~~w~Y~~~l~~~a~~~v~~l 32 (216)
T 2lem_A 13 FANVYVDAVKDSGRDYVSQF 32 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666655554444443
No 394
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=24.18 E-value=4.3e+02 Score=26.98 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=30.3
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHhhhhc---chhhhhHHHHHHHHH---HHHHHHHHHhHHHHHHHHH
Q 039790 967 MSQLL-AMQDMLNQMMSTQKEIQKQMNSVVS---APVNKEGKRLEASLG---RSIEKVVKANSDALWARFQ 1030 (1395)
Q Consensus 967 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ke~~~lE~~l~---~~~~~~~~~~~~~~~~r~~ 1030 (1395)
|.++. ...+.+.||- ..++.+||+.+.. ..+.+.+..++..|+ ..+...|..+.+.|.++++
T Consensus 20 ~~~l~~~a~~~ve~l~--~seL~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~Lr~~l~ 88 (185)
T 3r2p_A 20 VDVLKDSGRDYVSQFE--GSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMS 88 (185)
T ss_dssp THHHHHHHHHHHHHHH--HSHHHHHTTCCCCTTCSCSSCHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence 44444 3335556653 2456677765533 344555566666652 2333334444444444443
No 395
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=23.27 E-value=7.8e+02 Score=27.14 Aligned_cols=214 Identities=12% Similarity=0.038 Sum_probs=101.6
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCc
Q 039790 269 DVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGK 348 (1395)
Q Consensus 269 dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~ 348 (1395)
+..++++.+.+|.|+--.+.+-.... ..+.-+..+.+ . .++.+..+........++..+..|.++++.......
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~----~~~~g~~~~~~-k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~ 75 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQR----RGGKGKSAARI-K-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 75 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhc----cCCCCceeeee-C-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcC
Confidence 45678899999999877765432000 00001111111 1 223333444455566888888899988887654322
Q ss_pred cccccCCCCCccCccccccceEEEcccCCCeEEEEEe---cCCCcEEEEEeCCCcEEEEeCCC-------CceeEEecCC
Q 039790 349 GERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMC---QWLTTRLASASLDGTVKIWDDRK-------STPLAVLRPY 418 (1395)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafs---pdg~~~LaSgs~Dg~IrIWDl~s-------g~~l~tl~~h 418 (1395)
.. +...+ ........+. .+..|..+..- .++ .+|+..+.+|.++-..+.. |.....+..+
T Consensus 76 ~~-~~a~G-------~~i~~~l~l~-~~e~i~~~~~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~ 145 (307)
T 1zi0_A 76 AT-RGARG-------RPIVNLLPLE-QDERITAILPVTEFEEG-VKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG 145 (307)
T ss_dssp CC-SSSCC-------EEGGGTSCCC-TTCCEEEEEEESCCCTT-CEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT
T ss_pred CC-CCCCC-------eEhhhccCCC-CCCEEEEEEEeccCCCC-cEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC
Confidence 11 00000 0000000111 23445555432 233 5788999999999987642 2222223333
Q ss_pred CCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccccccceEEEEeC
Q 039790 419 DGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLEDAFFNQVVALNR 498 (1395)
Q Consensus 419 ~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~~~~~~~l~~S~ 498 (1395)
+ .+..+... .+...|+... .+|.+..++...-. ... ....-+.-+.... .+.+.. +..-.
T Consensus 146 -d-~lv~~~~~----~~~~~i~l~T-~~G~~irf~~~~v~----~~g-r~a~Gv~~i~L~~-------~d~Vv~-~~~~~ 205 (307)
T 1zi0_A 146 -D-ELIGVDLT----SGEDEVMLFS-AEGKVVRFKESSVR----AMG-CNTTGVRGIRLGE-------GDKVVS-LIVPR 205 (307)
T ss_dssp -C-CEEEEEEE----CTTCEEEEEE-TTSEEEEEEGGGSC----BCC-TTCCCEECCCCCT-------TCCEEE-EECCC
T ss_pred -C-EEEEEEEe----CCCCEEEEEC-CCCcEEEEEHHHcC----ccC-CCCCCeEeEEeCC-------CCEEEE-EEEec
Confidence 3 56666655 3334444444 78888777764320 000 0011111122211 111221 22223
Q ss_pred CCCEEEEEeCCCeEEEEEcC
Q 039790 499 AGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 499 dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
++..|+..+..|.++-+++.
T Consensus 206 ~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 206 GDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp SSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEEEcCCceEEEEHH
Confidence 45567777888888887764
No 396
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=23.24 E-value=8.9e+02 Score=27.80 Aligned_cols=136 Identities=10% Similarity=0.108 Sum_probs=69.8
Q ss_pred CCeEEEEEe-e-CC----CCE-EEEEECCCcEEEEECCCCCCCCCC-cccccceEEEEEEecC---CCCCccEEEEeCC-
Q 039790 258 QRVTDMAFF-A-ED----VHL-LASASVDGRFFIWNITEGPDEEDK-PQILGKIVVAIQILAD---GDSVHPRVCWHPH- 325 (1395)
Q Consensus 258 ~~V~slaf~-s-~d----g~~-LaSgs~DgtV~IWdl~tg~~~~~~-~~~~~~~i~~l~~~~~---~~~~v~~v~~sp~- 325 (1395)
..+.++++. . ++ +.+ .++=...+-|.|+|+.+++..... ..........+.+.+. ....+..++++|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 457888883 1 11 223 333334678999999988621110 0000000000000000 1245667888887
Q ss_pred ---CCeEEEEEeCC-eEEEEEcCCCCccccccCCCCCccCccccccceEEEcccC--CCeEEEEEe-cCCCcEEEEEeCC
Q 039790 326 ---KQEILMLAIGN-RILKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHD--GEITELSMC-QWLTTRLASASLD 398 (1395)
Q Consensus 326 ---~~~lla~g~~~-~ii~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~--~~V~slafs-pdg~~~LaSgs~D 398 (1395)
++.++.....+ .++.+......... ....++.++... .....+++. .+| .++++--..
T Consensus 232 ~~~~~~LYf~plss~~ly~V~T~~L~~~~--------------~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~ 296 (381)
T 3q6k_A 232 SEGNRPAYYLAGSAIKVYSVNTKELKQKG--------------GKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANT 296 (381)
T ss_dssp TTSCCEEEEEESSCSEEEEEEHHHHSSTT--------------CCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSS
T ss_pred CCCCeEEEEEECCCCcEEEEEHHHhhCcc--------------hhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccC
Confidence 56666666544 56666543222110 111233333222 334456775 455 778888888
Q ss_pred CcEEEEeCCC
Q 039790 399 GTVKIWDDRK 408 (1395)
Q Consensus 399 g~IrIWDl~s 408 (1395)
..|..|+..+
T Consensus 297 ~aI~~w~~~~ 306 (381)
T 3q6k_A 297 KQVSCWNTQK 306 (381)
T ss_dssp SEEEEEETTS
T ss_pred CeEEEEeCCC
Confidence 9999999875
No 397
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=22.92 E-value=8.6e+02 Score=27.52 Aligned_cols=216 Identities=10% Similarity=0.049 Sum_probs=107.1
Q ss_pred CEEEEEEecCCCEEEEEEcCCeEEEEECCCC-c-----------eEEeccC-CCCeEEEEEeeCCCCEEEEEECCCcEEE
Q 039790 218 LVLGRQIAVNRNYICYGLKLGNIRILNIITA-L-----------RSLLRGH-TQRVTDMAFFAEDVHLLASASVDGRFFI 284 (1395)
Q Consensus 218 ~V~~va~Spdg~~LasGs~DG~IrIWd~~~~-~-----------~~~l~~H-~~~V~slaf~s~dg~~LaSgs~DgtV~I 284 (1395)
.+..++++....+.+.-..||.|+.|-.... + ...+..- ...|..|+. .....+.-..||.|+.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEE
Confidence 4555667776677777788999999965431 0 1112211 225777776 3455566678999999
Q ss_pred EECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeEEEEEcCCCCccccccCCCCCccCccc
Q 039790 285 WNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKCPVDE 364 (1395)
Q Consensus 285 Wdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~ii~~d~~~~~~~~~~s~~~~~~~~~~~ 364 (1395)
|-....-.+-.- ..........+.......+..++......+.++...++.++.|-....+.... ... ..
T Consensus 183 wG~n~~GqLG~~--~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~---g~~-----~~ 252 (389)
T 3kci_A 183 WGKGRYGRLGHS--DSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGR---GGS-----DG 252 (389)
T ss_dssp EECCGGGTTCSS--SCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSS---SSC-----CC
T ss_pred eCCCCCCCcCCC--CCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCC---CCC-----CC
Confidence 976431100000 00011111111111222333444333234667777788888886544332100 000 00
Q ss_pred cccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-c----------eeEEecCCCCCCeeEEEEeecCC
Q 039790 365 LINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-T----------PLAVLRPYDGHPVNCVTFLIGPH 433 (1395)
Q Consensus 365 ~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~----------~l~tl~~h~~~~V~sV~fs~~~~ 433 (1395)
...+..+..-....|..|+... ...+.-..||.|..|-.... + .-..+..-.+..|..|+..
T Consensus 253 ~~~p~~v~~~~~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G---- 325 (389)
T 3kci_A 253 CKVPMKIDSLTGLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG---- 325 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC----
T ss_pred ccccEEecccCCCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec----
Confidence 0011111111223577777654 34444578999999965321 0 1112222222257777764
Q ss_pred CCCcEEEEEecCCCeEEEEECCC
Q 039790 434 PQHIVLITGGPLNRELKIWASAE 456 (1395)
Q Consensus 434 pdg~~L~s~Gs~Dg~I~IWDl~t 456 (1395)
....++. . .||.|..|=...
T Consensus 326 -~~h~~al-~-~~G~v~~wG~n~ 345 (389)
T 3kci_A 326 -SLHCVCC-T-EDGEVYTWGDND 345 (389)
T ss_dssp -SSEEEEE-E-TTCCEEEEECCT
T ss_pred -cCeEEEE-C-CCCCEEEeeCCC
Confidence 2223333 4 799999997654
No 398
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.77 E-value=3.9e+02 Score=23.50 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 1193 IALRDAINSATSITQTLSGELADGQRKLLAM 1223 (1395)
Q Consensus 1193 ~~L~~~i~~~~~~~~~~~~e~~~~~~~~~~~ 1223 (1395)
+.|.+.|+.|..-+..+...+..++++...+
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777776554
No 399
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.62 E-value=5e+02 Score=24.69 Aligned_cols=78 Identities=9% Similarity=0.179 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---chhhhhHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHH
Q 039790 966 TMSQLLAMQDMLNQMMSTQKEIQKQMNSVVS---APVNKEGKRLEASLGRSIE--------KVVKANSDALWARFQEENA 1034 (1395)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ke~~~lE~~l~~~~~--------~~~~~~~~~~~~r~~~~~~ 1034 (1395)
+..++..+...+++|+.|-..+.++...+.- ..|.+. +.|-..+..++. +.++..++.|.+++++.+.
T Consensus 7 V~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~-~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~ 85 (119)
T 2avr_X 7 LVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQN-EQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3444555667788888888877776665311 111111 122222222222 2355666777777776666
Q ss_pred HHHHHHHHHH
Q 039790 1035 KHEKLERDRM 1044 (1395)
Q Consensus 1035 ~~~~~~~~rq 1044 (1395)
..|+.-+..+
T Consensus 86 ~Ld~eI~~qe 95 (119)
T 2avr_X 86 KLEAEMEQQK 95 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655544443
No 400
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=21.22 E-value=3.9e+02 Score=26.72 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039790 1157 SCKAMFEQIDSTFQKGLIKHTTAIQQQFETAHSPMAIALRDAINSATSITQTLSGELADGQRKLLAM 1223 (1395)
Q Consensus 1157 ~~~~m~~qv~~~~~~~~~e~~~~~q~~~~~~~~~l~~~L~~~i~~~~~~~~~~~~e~~~~~~~~~~~ 1223 (1395)
+-++|-+|+..+|.-.+...+.+.|...|..+..+ ....++.+..+.+...+..++++|..+
T Consensus 82 sQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ai-----nny~~Ads~~~~lekKvn~aq~kLs~L 143 (201)
T 3u0c_A 82 SQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQI-----NKLKNADSKIKDLENKINQIQTRLSEL 143 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67889999999998888888887776655544321 111223334455666666666665543
No 401
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.13 E-value=4e+02 Score=22.95 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 039790 1210 SGELADGQRKL 1220 (1395)
Q Consensus 1210 ~~e~~~~~~~~ 1220 (1395)
+.||.++++++
T Consensus 55 k~Ei~elrr~i 65 (77)
T 3trt_A 55 KQESTEYRRQV 65 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 402
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.03 E-value=2.3e+03 Score=31.87 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHH
Q 039790 1002 EGKRLEASLGRSI 1014 (1395)
Q Consensus 1002 e~~~lE~~l~~~~ 1014 (1395)
+.+|++..|.+-.
T Consensus 1918 ~~~rl~~GL~KL~ 1930 (3245)
T 3vkg_A 1918 EQLHLNIGLKKLR 1930 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554433
No 403
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=20.04 E-value=1e+03 Score=27.17 Aligned_cols=224 Identities=10% Similarity=0.053 Sum_probs=103.8
Q ss_pred CeEEEEEeeCCCCEEEEEECCCcEEEEECCCCCCCCCCcccccceEEEEEEecCCCCCccEEEEeCCCCeEEEEEeCCeE
Q 039790 259 RVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQILGKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRI 338 (1395)
Q Consensus 259 ~V~slaf~s~dg~~LaSgs~DgtV~IWdl~tg~~~~~~~~~~~~~i~~l~~~~~~~~~v~~v~~sp~~~~lla~g~~~~i 338 (1395)
.|..|+. .....+.-..||.|+.|-....-.+-.- . .........+..-....+. .+.....+.++...++.+
T Consensus 122 ~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g-~-~~~~~~p~~v~~~~~~~i~--~va~G~~hs~alt~~G~v 194 (406)
T 4d9s_A 122 RIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLG-D-TEDSLVPQKIQAFEGIRIK--MVAAGAEHTAAVTEDGDL 194 (406)
T ss_dssp CEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSS-S-CCCEEEEEECGGGTTCCEE--EEEECSSEEEEEETTSCE
T ss_pred CEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCC-C-CCCcccceEecccCCCcEE--EEecCCCeEEEEeCCCCE
Confidence 6777776 3445566678999999976542211000 0 0011111111111112232 333344466777778888
Q ss_pred EEEEcCCCCccccccCCCCCccCccccccceEEEcccCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-c-------
Q 039790 339 LKIDSNRVGKGERFSAEEPLKCPVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKS-T------- 410 (1395)
Q Consensus 339 i~~d~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~h~~~V~slafspdg~~~LaSgs~Dg~IrIWDl~sg-~------- 410 (1395)
+.|-....+.... ... .....+..+.......|..|+... ...+.-..||.|..|-.... +
T Consensus 195 ~~wG~n~~GqlG~---g~~-----~~~~~p~~v~~~~~~~i~~va~G~---~ht~~l~~~G~v~~wG~n~~GqlG~g~~~ 263 (406)
T 4d9s_A 195 YGWGWGRYGNLGL---GDR-----TDRLVPERVTSTGGEKMSMVACGW---RHTISVSYSGALYTYGWSKYGQLGHGDLE 263 (406)
T ss_dssp EEEECCTTSTTCS---SSS-----CCEEEEEECCCSTTCCEEEEEECS---SEEEEEETTCCEEEEECCTTSTTCSSSCC
T ss_pred EEeeCCCCCCCCC---CCC-----CCcCccEEecccCCceEEEEEECC---CcEEEEcCCCCEEEeeCCCCCCCCCCCCc
Confidence 8886544332100 000 000011111111224577777644 34555578999999974321 1
Q ss_pred ---eeEEecCCCCCCeeEEEEeecCCCCCcEEEEEecCCCeEEEEECCCCCCCCCCCCcccccEEEEEeccCcccccccc
Q 039790 411 ---PLAVLRPYDGHPVNCVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSSAELRLED 487 (1395)
Q Consensus 411 ---~l~tl~~h~~~~V~sV~fs~~~~pdg~~L~s~Gs~Dg~I~IWDl~tg~~~~~~~~~~~~~~l~tl~~h~~~i~~~~~ 487 (1395)
.-..+..-.+..|..|+.- ....++. . .||.|..|=................... .+.....
T Consensus 264 ~~~~p~~v~~~~~~~v~~i~~G-----~~hs~al-t-~~G~v~~wG~n~~GqLG~g~~~~~~~p~-~v~~~~~------- 328 (406)
T 4d9s_A 264 DHLIPHKLEALSNSFISQISGG-----WRHTMAL-T-SDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDD------- 328 (406)
T ss_dssp CEEEEEECGGGTTSCEEEEEEC-----SSEEEEE-E-TTSCEEEEECCTTSTTCSSSSSCEEEEE-EECCGGG-------
T ss_pred CccccEEecccCCCCEEEEEec-----CCEEEEE-c-CCCeEEEeeCCCCCCCCCCCCCCCccCE-EEeccCC-------
Confidence 1112222222257777663 2223333 3 7999999976543111111111111111 1111110
Q ss_pred cccceEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 039790 488 AFFNQVVALNRAGLFLLANAKKNAIYAIHMD 518 (1395)
Q Consensus 488 ~~~~~~l~~S~dg~~LaSgs~Dg~I~iWdl~ 518 (1395)
..+..++....+.++-..||.||.|=.+
T Consensus 329 ---~~v~~va~G~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 329 ---QKVVQVSCGWRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp ---CCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred ---CcEEEEEeCCCeEEEEeCCCCEEEecCC
Confidence 1134455555666667788999999654
Done!