BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039791
(552 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 232 DICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLL 291
DI + + D E +LG + +N +IF + E L +V Y DV ++
Sbjct: 187 DIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVR 245
Query: 292 KSPEILSFDLETQVISVKGLLNHLGLSAKELK 323
K+P +L+F SV+ L N LG KEL+
Sbjct: 246 KAPFLLNF-------SVERLDNRLGFFQKELE 270
>sp|Q6FV22|MRS2_CANGA Mitochondrial inner membrane magnesium transporter MRS2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRS2 PE=3 SV=1
Length = 456
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 217 FGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKV 273
+MSS+E ++ Y IC +I + + + KL EL+ ++K++ L Y + +L+++V
Sbjct: 198 INIMSSLEAEFKLHYSICGQILIDLENEVNRDKLRELLIKSKNLTLFYQKSLLIREV 254
>sp|P59414|AROE_BUCBP Shikimate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=aroE PE=3 SV=1
Length = 282
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 473 LCQDLGSSLDYLYAFPTFLCFDLEYRIKPRY-KFHMWLVENG-LCTKNYSIASMVATSEK 530
+CQ+ S C+D+ Y IK +Y +F +W ++NG +C N I +V+ +
Sbjct: 198 ICQNSNLSTIKSLIHKDVYCYDINYSIKHKYTEFLLWCIKNGAICVSN-GIGMLVSQAAH 256
Query: 531 SFISRIYGIHP 541
SF YGI P
Sbjct: 257 SFY-LWYGILP 266
>sp|P74361|CLPB2_SYNY3 Chaperone protein ClpB 2 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=clpB2 PE=3 SV=1
Length = 872
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 371 LSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSE 430
LSNP E + G SL+KLL ++ + YG++ ++++ L A+G
Sbjct: 76 LSNPSESI--YLGRSLDKLLDNAEIAKSK-----------YGDDYISIEHLMAAYGQDDR 122
Query: 431 LQE---RFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDL 477
L + R L N +A ++ IR T K+ +QNPE + L+ +DL
Sbjct: 123 LGKNLYREIGLTENKLA--EIIKQIRGTQKVTDQNPEGKYESLEKYGRDL 170
>sp|P0CM76|CLP1_CRYNJ Protein CLP1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=CLP1 PE=3 SV=1
Length = 548
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 59/154 (38%), Gaps = 22/154 (14%)
Query: 201 TEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSI 260
T T+ D++T G + N EVW + + + R EK K+ + G +
Sbjct: 189 TAANTISGDVETASWWLGALEPTNKNAEVWRVLVEHMAEAWGMRCEKDKIANISG----L 244
Query: 261 FLDYPEEVLVQKVEYFCRFGVGNEDV-GLLLLKSPEILSFDLETQVISVKGLLNHLGLSA 319
FLD P V G +D L S I +FD++T +I + H+ LS
Sbjct: 245 FLDTPAAFTVPT------LGTKKDDPKARYTLVSHAIQAFDIDT-IIVIGHEKLHIDLS- 296
Query: 320 KELKSVSEMYPYVLGRN-KMANLPYVIRAVDLQD 352
P V R + +P AVDL D
Sbjct: 297 --------RLPLVQSRQLNVIRIPKSGGAVDLDD 322
>sp|P0CM77|CLP1_CRYNB Protein CLP1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=CLP1 PE=3 SV=1
Length = 548
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 59/154 (38%), Gaps = 22/154 (14%)
Query: 201 TEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSI 260
T T+ D++T G + N EVW + + + R EK K+ + G +
Sbjct: 189 TAANTISGDVETASWWLGALEPTNKNAEVWRVLVEHMAEAWGMRCEKDKIANISG----L 244
Query: 261 FLDYPEEVLVQKVEYFCRFGVGNEDV-GLLLLKSPEILSFDLETQVISVKGLLNHLGLSA 319
FLD P V G +D L S I +FD++T +I + H+ LS
Sbjct: 245 FLDTPAAFTVPT------LGTKKDDPKARYTLVSHAIQAFDIDT-IIVIGHEKLHIDLS- 296
Query: 320 KELKSVSEMYPYVLGRN-KMANLPYVIRAVDLQD 352
P V R + +P AVDL D
Sbjct: 297 --------RLPLVQSRQLNVIRIPKSGGAVDLDD 322
>sp|Q09448|PHO10_CAEEL Putative acid phosphatase 10 OS=Caenorhabditis elegans GN=pho-10
PE=3 SV=2
Length = 411
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 158 QSSQDLTAKLSRLKNYYGFS----NVILVGICLGFPHVLAGNGDEWGTEIATLF 207
+ Q+ T+ L++LK +YG+S NV V + LG PH+ A D W + A +F
Sbjct: 292 ERGQNCTSYLNKLK-FYGYSIHDNNVYAVLVALGIPHISATE-DGWPSYAAAIF 343
>sp|Q1RJ81|RMUC_RICBR DNA recombination protein RmuC homolog OS=Rickettsia bellii (strain
RML369-C) GN=rmuC PE=3 SV=1
Length = 428
Score = 32.3 bits (72), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 14 HLSSAAKLKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSL------NTLSK 67
+L +LK +Y+ ++IK++++ E K+ F + +SK + NT ++
Sbjct: 57 YLQKIEQLKCRVEYQEQSIKDSEKIRNESFSSAKAALFDLGKDLSKQLIEIHKMENTAAR 116
Query: 68 LIADLGVSYSAPSFSSTFQRFL 89
+A+ ++ ++ F+S F+R +
Sbjct: 117 ELAEKNIATASGKFNSEFERLI 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,914,569
Number of Sequences: 539616
Number of extensions: 8781730
Number of successful extensions: 20136
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 20132
Number of HSP's gapped (non-prelim): 14
length of query: 552
length of database: 191,569,459
effective HSP length: 123
effective length of query: 429
effective length of database: 125,196,691
effective search space: 53709380439
effective search space used: 53709380439
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)