Query 039791
Match_columns 552
No_of_seqs 287 out of 1197
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 23:04:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 3.1E-46 1.1E-50 387.7 24.6 306 129-539 20-342 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 1.5E-43 5E-48 355.9 18.7 258 164-549 6-268 (270)
3 3mva_O Transcription terminati 100.0 4.7E-35 1.6E-39 303.7 22.1 302 99-504 24-340 (343)
4 4fp9_B Mterf domain-containing 100.0 9.7E-35 3.3E-39 297.2 18.4 218 232-550 45-273 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 5E-30 1.7E-34 257.3 21.8 241 129-503 6-255 (270)
6 4fp9_B Mterf domain-containing 99.9 4.2E-23 1.5E-27 211.1 19.3 181 162-479 45-227 (335)
7 4fzv_B Mterf domain-containing 99.0 2.4E-09 8.1E-14 93.5 12.4 184 271-548 35-226 (239)
8 4fzv_B Mterf domain-containing 98.1 2.3E-05 7.9E-10 68.4 11.8 151 126-317 31-182 (239)
9 3ugm_A TAL effector avrbs3/PTH 88.7 2 6.9E-05 46.8 10.5 143 32-188 272-436 (1047)
10 1oqy_A HHR23A, UV excision rep 83.4 2.3 7.9E-05 43.4 7.6 41 233-282 168-208 (368)
11 4ae4_A Ubiquitin-associated pr 81.4 22 0.00077 29.9 11.8 105 164-314 9-113 (118)
12 3ff5_A PEX14P, peroxisomal bio 81.1 2.9 9.9E-05 30.2 5.1 35 290-328 19-53 (54)
13 3ugm_A TAL effector avrbs3/PTH 76.8 20 0.00068 39.3 12.0 199 101-327 419-638 (1047)
14 1oqy_A HHR23A, UV excision rep 74.3 2.7 9.4E-05 42.9 4.7 43 127-178 167-209 (368)
15 4ae4_A Ubiquitin-associated pr 70.4 23 0.0008 29.8 8.9 84 236-329 11-100 (118)
16 2knz_A Ubiquilin-4; cytoplasm, 70.1 3.7 0.00012 29.4 3.3 44 396-442 8-51 (53)
17 2w84_A Peroxisomal membrane pr 68.7 7.9 0.00027 29.4 4.9 36 290-329 24-59 (70)
18 3ff5_A PEX14P, peroxisomal bio 66.6 10 0.00036 27.2 5.0 36 253-292 18-53 (54)
19 1ify_A HHR23A, UV excision rep 59.9 8.6 0.00029 27.0 3.5 23 432-454 9-31 (49)
20 3dfg_A Xcrecx, regulatory prot 56.8 1E+02 0.0035 27.0 12.8 76 92-188 32-108 (162)
21 2ooa_A E3 ubiquitin-protein li 56.4 10 0.00036 26.9 3.3 20 396-415 8-27 (52)
22 2cos_A Serine/threonine protei 56.2 17 0.00057 26.1 4.4 14 430-443 37-50 (54)
23 1ify_A HHR23A, UV excision rep 54.4 14 0.00046 25.9 3.8 42 395-440 4-45 (49)
24 2jy5_A Ubiquilin-1; UBA, alter 50.9 10 0.00034 27.0 2.6 40 396-438 9-48 (52)
25 4e9m_A Nucleotide-binding olig 50.9 8.7 0.0003 33.3 2.7 76 37-114 44-123 (144)
26 3idw_A Actin cytoskeleton-regu 48.5 14 0.00049 28.1 3.2 17 310-326 42-58 (72)
27 2oo9_A E3 ubiquitin-protein li 48.2 18 0.00061 24.9 3.3 24 430-453 3-26 (46)
28 2w84_A Peroxisomal membrane pr 47.7 28 0.00097 26.3 4.7 36 254-293 24-59 (70)
29 2knz_A Ubiquilin-4; cytoplasm, 47.3 37 0.0013 24.0 5.2 38 235-280 13-51 (53)
30 2bwb_A Ubiquitin-like protein 44.2 17 0.00059 25.1 2.9 40 397-439 5-44 (46)
31 2dah_A Ubiquilin-3; UBA domain 44.1 14 0.00049 26.4 2.6 41 397-440 7-47 (54)
32 2g3q_A Protein YBL047C; endocy 44.0 15 0.00051 24.7 2.6 23 433-455 6-28 (43)
33 2ekk_A UBA domain from E3 ubiq 42.6 26 0.00089 24.0 3.7 20 435-454 13-32 (47)
34 2cp8_A NEXT to BRCA1 gene 1 pr 40.7 34 0.0012 24.5 4.0 45 395-442 5-49 (54)
35 4hpz_A Dtale2; DNA binding pro 40.2 53 0.0018 33.2 6.7 22 128-149 29-50 (463)
36 4hpz_A Dtale2; DNA binding pro 38.0 1.6E+02 0.0053 29.8 9.7 51 135-194 8-58 (463)
37 1veg_A NEDD8 ultimate buster-1 38.0 47 0.0016 26.0 4.9 14 400-413 30-43 (83)
38 1z96_A DNA-damage, UBA-domain 37.9 30 0.001 22.5 3.3 24 432-455 5-28 (40)
39 1wr1_B Ubiquitin-like protein 37.5 21 0.00073 26.0 2.6 41 396-439 14-54 (58)
40 2d9s_A CBL E3 ubiquitin protei 37.3 29 0.001 24.7 3.2 22 432-453 10-31 (53)
41 1wji_A Tudor domain containing 37.3 26 0.00087 25.9 3.1 19 435-453 13-31 (63)
42 2ooa_A E3 ubiquitin-protein li 36.8 66 0.0023 22.8 4.9 40 234-281 12-51 (52)
43 2juj_A E3 ubiquitin-protein li 36.7 29 0.001 24.8 3.1 24 430-453 6-29 (56)
44 1vg5_A RSGI RUH-014, rhomboid 36.6 21 0.00072 27.3 2.6 16 399-414 29-44 (73)
45 2dna_A Unnamed protein product 36.3 32 0.0011 25.9 3.5 43 396-441 16-58 (67)
46 3e3v_A Regulatory protein RECX 35.7 2E+02 0.0067 25.6 9.6 143 77-256 13-162 (177)
47 1veg_A NEDD8 ultimate buster-1 35.6 29 0.00097 27.3 3.3 41 432-479 30-70 (83)
48 2dak_A Ubiquitin carboxyl-term 34.8 54 0.0019 24.0 4.6 38 433-477 11-48 (63)
49 1wiv_A UBP14, ubiquitin-specif 32.7 30 0.001 26.4 2.9 19 435-453 33-51 (73)
50 1vg5_A RSGI RUH-014, rhomboid 32.6 26 0.00089 26.8 2.5 42 428-476 26-67 (73)
51 1vej_A Riken cDNA 4931431F19; 32.5 32 0.0011 26.4 3.0 42 395-439 25-66 (74)
52 2cwb_A Chimera of immunoglobul 30.6 37 0.0012 28.1 3.3 43 397-442 64-106 (108)
53 1wji_A Tudor domain containing 30.4 34 0.0012 25.3 2.8 16 400-415 10-25 (63)
54 3idw_A Actin cytoskeleton-regu 29.8 41 0.0014 25.5 3.1 49 308-360 5-60 (72)
55 2dak_A Ubiquitin carboxyl-term 29.2 29 0.00099 25.5 2.2 38 398-439 8-45 (63)
56 2lbc_A Ubiquitin carboxyl-term 28.6 1.6E+02 0.0056 24.5 7.3 36 235-278 80-115 (126)
57 3ezq_A Tumor necrosis factor r 27.9 43 0.0015 28.0 3.3 44 76-119 2-48 (115)
58 2jy5_A Ubiquilin-1; UBA, alter 27.7 41 0.0014 23.7 2.7 40 428-474 9-49 (52)
59 1wiv_A UBP14, ubiquitin-specif 27.5 46 0.0016 25.3 3.2 18 398-415 28-45 (73)
60 2dag_A Ubiquitin carboxyl-term 27.2 91 0.0031 23.7 4.8 38 434-477 12-49 (74)
61 3ezq_B Protein FADD; apoptosis 27.0 2.4E+02 0.0082 23.5 8.0 44 227-280 17-61 (122)
62 1wgn_A UBAP1, ubiquitin associ 26.4 27 0.00094 25.7 1.6 20 435-454 23-42 (63)
63 1q06_A Transcriptional regulat 26.0 1.1E+02 0.0039 25.8 5.9 50 99-151 18-69 (135)
64 1g6u_A Domain swapped dimer; d 25.7 74 0.0025 21.0 3.4 23 161-184 3-25 (48)
65 2cpw_A CBL-interacting protein 25.5 83 0.0028 23.2 4.2 20 435-454 23-42 (64)
66 3c1d_A Protein ORAA, regulator 23.7 2.6E+02 0.0087 24.2 7.9 60 125-188 46-106 (159)
67 2dai_A Ubadc1, ubiquitin assoc 23.5 1.2E+02 0.0039 23.7 4.9 37 434-477 32-68 (83)
68 2dai_A Ubadc1, ubiquitin assoc 23.5 54 0.0018 25.6 2.9 39 398-440 28-66 (83)
69 4fqn_A Malcavernin; helical do 22.4 13 0.00045 29.9 -0.8 23 86-108 73-95 (98)
70 3d5l_A Regulatory protein RECX 22.2 4.5E+02 0.016 24.0 11.9 59 126-188 93-153 (221)
71 2of5_A Death domain-containing 21.4 1.7E+02 0.0059 24.1 5.9 41 227-277 35-75 (114)
72 2ef8_A C.ECOT38IS, putative tr 21.2 1.9E+02 0.0065 21.2 5.8 24 463-486 52-75 (84)
73 2crn_A Ubash3A protein; compac 20.5 1.3E+02 0.0045 22.1 4.4 18 436-453 14-31 (64)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=3.1e-46 Score=387.70 Aligned_cols=306 Identities=16% Similarity=0.223 Sum_probs=261.4
Q ss_pred HHHHHHHHhCCCChhhHHHHHhhhccccccChhhHHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHH
Q 039791 129 LNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFD 208 (552)
Q Consensus 129 ~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~ 208 (552)
...+.+|.++|++.+++ .+.+|.++..+++...++++||+++ |++++++.+++.++|.+|.. ++ .++.
T Consensus 20 ~~~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~~~~~vl~fL~~~-G~s~~~i~~iv~~~P~lL~~---~~-~~l~---- 87 (343)
T 3mva_O 20 EDLLKNLLTMGVDIDMA---RKRQPGVFHRMITNEQDLKMFLLSK-GASKEVIASIISRYPRAITR---TP-ENLS---- 87 (343)
T ss_dssp CCHHHHHHHHTCCHHHH---HHHCGGGGGCSCCCHHHHHHHHHHT-TCCHHHHHHHHHHCGGGGGC---CH-HHHH----
T ss_pred HHHHHHHHHcCCCHHHH---HHhCchhhccCcccHHHHHHHHHHc-CCCHHHHHHHHHhCcHHHhC---CH-HHHH----
Confidence 46889999999997766 4556999999999999999999999 99999999999999999998 53 2444
Q ss_pred HHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCch-hhHHHHHHHHHhcCCChhHHH
Q 039791 209 DLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPE-EVLVQKVEYFCRFGVGNEDVG 287 (552)
Q Consensus 209 ~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~-~~l~~~v~fL~~lG~~~~~i~ 287 (552)
++++||+++|++++++++++.++|++|..+.+ +++.|+++||+++|++.++|+
T Consensus 88 --------------------------p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~ 141 (343)
T 3mva_O 88 --------------------------KRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLC 141 (343)
T ss_dssp --------------------------HHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred --------------------------HHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHH
Confidence 45566668999999999999999996555555 489999999999999999999
Q ss_pred HHHhhCCceecccccccHhhHHHHHhhcCCC------HHHHHHHHHhCCcccccc--cccchHHHHH-hCCc-hHHHHHH
Q 039791 288 LLLLKSPEILSFDLETQVISVKGLLNHLGLS------AKELKSVSEMYPYVLGRN--KMANLPYVIR-AVDL-QDWFFNK 357 (552)
Q Consensus 288 ~il~~~P~iL~~s~e~~L~~~v~fL~~lG~s------~~~i~~~l~~~P~iL~~~--~lk~~~~~L~-~lGv-~~~l~~i 357 (552)
+++.++|++++++++++ +++++||+++|++ .+.|.+++.++|.+|+.+ .+++.+.+++ ++|+ .+++..+
T Consensus 142 ~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~ 220 (343)
T 3mva_O 142 RLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVL 220 (343)
T ss_dssp HHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998876 9999999987764 778999999999999987 3556677777 4888 6667666
Q ss_pred HHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHH
Q 039791 358 ITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDC 437 (552)
Q Consensus 358 I~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~ 437 (552)
+.. .|..+ +..+.+.++++++|
T Consensus 221 i~~------------~~~~~----------------------------------------------l~~s~~~l~~~~~~ 242 (343)
T 3mva_O 221 ICG------------PGAEI----------------------------------------------LDLSNDYARRSYAN 242 (343)
T ss_dssp HHT------------TTGGG----------------------------------------------GGCCTTHHHHHHHH
T ss_pred Hhc------------CChHH----------------------------------------------hhccHHHHHHHHHH
Confidence 665 33222 11234556666655
Q ss_pred HH----HcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCCChHHHhhcCcccccccCCcchhHHHHHHHHHHCC
Q 039791 438 LL----RNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENG 513 (552)
Q Consensus 438 L~----~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~l~~~P~~L~ysle~rikpR~~~~~~L~~~G 513 (552)
+. ++||+.+||+.||.++|++|++|.|+|++|++||++ ||++.++|+++|++|+||+| ||+|||+ +|+++|
T Consensus 243 l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g 317 (343)
T 3mva_O 243 IKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAG 317 (343)
T ss_dssp HHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCC
Confidence 55 699999999999999999999999999999999999 99999999999999999999 9999997 899999
Q ss_pred CCCCccccc--cccccchhHHHHHhccc
Q 039791 514 LCTKNYSIA--SMVATSEKSFISRIYGI 539 (552)
Q Consensus 514 ~~~~~~sl~--~il~~sd~~F~~~~~~~ 539 (552)
+ +++++ +||++||++|.++|.+.
T Consensus 318 ~---~~~~~~~~~l~~s~~~F~~~~~~~ 342 (343)
T 3mva_O 318 C---NLSTLNITLLSWSKKRYEAKLKKL 342 (343)
T ss_dssp C---CSSSSCGGGGGSCHHHHHHHHHHT
T ss_pred C---CCCCCcchhhcCCHHHHHHHHhcc
Confidence 8 56666 99999999999999864
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.5e-43 Score=355.94 Aligned_cols=258 Identities=20% Similarity=0.306 Sum_probs=233.2
Q ss_pred HHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhC
Q 039791 164 TAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDF 243 (552)
Q Consensus 164 ~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~l 243 (552)
.+++++|.++ |++.+++.+....+|.+|.. +++.++.| +++||.++
T Consensus 6 s~~l~~L~~l-Gv~~~~i~k~p~~~p~lL~~---~~~~~l~~------------------------------~l~fL~~l 51 (270)
T 3m66_A 6 SETLQKLVLL-GVDLSKIEKHPEAANLLLRL---DFEKDIKQ------------------------------MLLFLKDV 51 (270)
T ss_dssp HHHHHHHHHT-TCCHHHHTTSHHHHHHHHTC---CHHHHTHH------------------------------HHHHHHHH
T ss_pred hHHHHHHHHc-CCCHHHHhhccchhhhhhcc---ChhhhHHH------------------------------HHHHHHHc
Confidence 4789999999 99999998887778888999 66655555 45556689
Q ss_pred CCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHH-hhcCCCHHHH
Q 039791 244 RFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLL-NHLGLSAKEL 322 (552)
Q Consensus 244 G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL-~~lG~s~~~i 322 (552)
|+++++|++++.++|.+|.++.++ +.|+++||+++|++.++|++++.++|++|++++++ ++|+++|| .++|++.+++
T Consensus 52 G~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i 129 (270)
T 3m66_A 52 GIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKT 129 (270)
T ss_dssp TCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHH
T ss_pred CCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999976 99999999999999999999999999999999874 99999999 5799999999
Q ss_pred HHHHHhCCcccccccccchHHHHHhCCchHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHH
Q 039791 323 KSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNK 402 (552)
Q Consensus 323 ~~~l~~~P~iL~~~~lk~~~~~L~~lGv~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k 402 (552)
.+++.++|++++.+
T Consensus 130 ~~ll~~~P~il~~s------------------------------------------------------------------ 143 (270)
T 3m66_A 130 RDLVVRLPRLLTGS------------------------------------------------------------------ 143 (270)
T ss_dssp HHHHHHSGGGGTSC------------------------------------------------------------------
T ss_pred HHHHHhCCcceeec------------------------------------------------------------------
Confidence 99999999999864
Q ss_pred HHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH-HcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCCCh
Q 039791 403 LTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL-RNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSL 481 (552)
Q Consensus 403 ~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~ 481 (552)
.++++++++++. ++||+.++|..|+.++|++|++|.++|++|++||+++||++.
T Consensus 144 -------------------------~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~ 198 (270)
T 3m66_A 144 -------------------------LEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPH 198 (270)
T ss_dssp -------------------------SHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCH
T ss_pred -------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCH
Confidence 123456777764 899999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccccCCcchhHHHHHHHHHHCCCCCCc---cccccccccchhHHHHHhcccCCCchHhHhh
Q 039791 482 DYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKN---YSIASMVATSEKSFISRIYGIHPAAPKQWLE 549 (552)
Q Consensus 482 ~~l~~~P~~L~ysle~rikpR~~~~~~L~~~G~~~~~---~sl~~il~~sd~~F~~~~~~~~p~~~~~~~~ 549 (552)
++|+++|++|+||+| ||+|||+|+++|.++|+.+.+ +++++++++||++|+++|++.++|..+.|.+
T Consensus 199 ~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f~k 268 (270)
T 3m66_A 199 HIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFLK 268 (270)
T ss_dssp HHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHHHT
T ss_pred HHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999 999999999999999997665 6788899999999999999999999988865
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=4.7e-35 Score=303.65 Aligned_cols=302 Identities=16% Similarity=0.207 Sum_probs=250.9
Q ss_pred HHHHhcCCCcccccccCCCcceeeccccchHHHHHHHHhCCCChhhHHHHHhhhccccccChhhHHHHHHHHHhhcCCCh
Q 039791 99 FFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSN 178 (552)
Q Consensus 99 ~f~eslGl~~~~~~~~~P~~l~~ls~d~~l~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L~~l~G~s~ 178 (552)
.||.++|++++.+.+..|. +. +.+.+...+.++||+++|++.++|++++.++|.++.++++.+.++++||+++ |+++
T Consensus 24 ~~L~s~Gl~~~~~~~~~p~-l~-~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~l-G~s~ 100 (343)
T 3mva_O 24 KNLLTMGVDIDMARKRQPG-VF-HRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKI-VTSD 100 (343)
T ss_dssp HHHHHHTCCHHHHHHHCGG-GG-GCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTT-SSCH
T ss_pred HHHHHcCCCHHHHHHhCch-hh-ccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHc-CCCH
Confidence 6889999999888777776 43 3444577899999999999999999999999999999998999999999999 9999
Q ss_pred hHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhhCC
Q 039791 179 VILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNK 258 (552)
Q Consensus 179 ~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P 258 (552)
+++.+++.++|++|..+ ..+.++. ++++||+++|++.++|++++.++|
T Consensus 101 ~~i~~il~~~P~iLl~s--~~~~~l~------------------------------p~v~fL~~lGl~~~~i~~ll~~~P 148 (343)
T 3mva_O 101 LEIVNILERSPESFFRS--NNNLNLE------------------------------NNIKFLYSVGLTRKCLCRLLTNAP 148 (343)
T ss_dssp HHHHHHHHHCSHHHHSC--CCHHHHH------------------------------HHHHHHHHTTCCHHHHHHHHHHCG
T ss_pred HHHHHHHHHCCHHHhCC--ChHhhHH------------------------------HHHHHHHHhCCCHHHHHHHHHhCC
Confidence 99999999999966552 2222344 466677799999999999999999
Q ss_pred cceecCchhhHHHHHHHHHhcCCC------hhHHHHHHhhCCceecccccccHhhHHHHHhh-cCCCHHHHHHHHHhCC-
Q 039791 259 SIFLDYPEEVLVQKVEYFCRFGVG------NEDVGLLLLKSPEILSFDLETQVISVKGLLNH-LGLSAKELKSVSEMYP- 330 (552)
Q Consensus 259 ~lL~~~~~~~l~~~v~fL~~lG~~------~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~~-lG~s~~~i~~~l~~~P- 330 (552)
++++.++++. .+++++|+++|++ .+.|.+++.++|.+++++ +++++++++||++ +|++.+++.+++.+.|
T Consensus 149 ~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~ 226 (343)
T 3mva_O 149 RTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGA 226 (343)
T ss_dssp GGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTG
T ss_pred hhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCCh
Confidence 9999998655 9999999987764 778999999999999999 8999999999996 9999999999998865
Q ss_pred ccccccc--ccchHH----HHHhCCc-hHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHHH
Q 039791 331 YVLGRNK--MANLPY----VIRAVDL-QDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKL 403 (552)
Q Consensus 331 ~iL~~~~--lk~~~~----~L~~lGv-~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~ 403 (552)
.+++.+. +++... ++.++|+ ++++..++.+ +|+++
T Consensus 227 ~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~------------~P~il-------------------------- 268 (343)
T 3mva_O 227 EILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLS------------YPDVI-------------------------- 268 (343)
T ss_dssp GGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHT------------CGGGG--------------------------
T ss_pred HHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh------------CCchh--------------------------
Confidence 6777652 333333 3346888 7788888877 77766
Q ss_pred HHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHHcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCCChHH
Q 039791 404 TFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDY 483 (552)
Q Consensus 404 ~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~ 483 (552)
..+.++++++++||.++|++.++| .++|++|+||.|+|+||++||.+ .|+..+.
T Consensus 269 ---------------------~~s~~~l~~k~~fl~~mg~~~~~i----~~~P~~l~~sleri~~R~~~L~~-~g~~~~~ 322 (343)
T 3mva_O 269 ---------------------FLAEKKFNDKIDCLMEENISISQI----IENPRVLDSSISTLKSRIKELVN-AGCNLST 322 (343)
T ss_dssp ---------------------GSCHHHHHHHHHHHHTTTCCHHHH----HHSGGGGGSCHHHHHHHHHHHHT-TTCCSSS
T ss_pred ---------------------cccHHHHHHHHHHHHHcCCCHHHH----HhCCHHHhcCHHHHHHHHHHHHH-CCCCCCC
Confidence 345678999999999999999875 69999999999999999999987 5986431
Q ss_pred HhhcCcccccccCCcchhHHH
Q 039791 484 LYAFPTFLCFDLEYRIKPRYK 504 (552)
Q Consensus 484 l~~~P~~L~ysle~rikpR~~ 504 (552)
.+-.+|+.| |++...||.
T Consensus 323 --~~~~~l~~s-~~~F~~~~~ 340 (343)
T 3mva_O 323 --LNITLLSWS-KKRYEAKLK 340 (343)
T ss_dssp --SCGGGGGSC-HHHHHHHHH
T ss_pred --CcchhhcCC-HHHHHHHHh
Confidence 122788888 447777765
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=9.7e-35 Score=297.24 Aligned_cols=218 Identities=20% Similarity=0.331 Sum_probs=196.7
Q ss_pred hHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHH
Q 039791 232 DICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGL 311 (552)
Q Consensus 232 ~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~f 311 (552)
++..++++|.++|+++++|++++.++|.++. .++.+++.||.++|++.++|++||.++|.+|+++++ +|+|+++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 3556888999999999999999999999873 678899999999999999999999999999999985 69999999
Q ss_pred HhhcCCCHHHHHHHHHhCCcccccccccchHHHHHhCCchHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhc
Q 039791 312 LNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLS 391 (552)
Q Consensus 312 L~~lG~s~~~i~~~l~~~P~iL~~~~lk~~~~~L~~lGv~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~ 391 (552)
|+++|++.++|.+++.++|++|+++
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s------------------------------------------------------- 144 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMR------------------------------------------------------- 144 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSC-------------------------------------------------------
T ss_pred HHHcCCCHHHHHHHHHhCchhhccC-------------------------------------------------------
Confidence 9999999999999999999999874
Q ss_pred cCCCchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH-HcCCchHHHHHHHhhcCcccccChhhHHHHH
Q 039791 392 SSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL-RNGVAFSKLCMMIRLTPKILNQNPETIEQKL 470 (552)
Q Consensus 392 ~s~~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~ 470 (552)
.+.+++++.+|. ++||+.++|..||.++|+||.+|.+.|++|+
T Consensus 145 ------------------------------------~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~ 188 (335)
T 4fp9_B 145 ------------------------------------QQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKF 188 (335)
T ss_dssp ------------------------------------HHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHH
T ss_pred ------------------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHH
Confidence 123455677776 8999999999999999999999999999999
Q ss_pred HHHHHhhCCChHHHhhcCcccccccCCcchhHHHHHHHHHHCCCC----------CCccccccccccchhHHHHHhcccC
Q 039791 471 DFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLC----------TKNYSIASMVATSEKSFISRIYGIH 540 (552)
Q Consensus 471 ~fL~~~mg~~~~~l~~~P~~L~ysle~rikpR~~~~~~L~~~G~~----------~~~~sl~~il~~sd~~F~~~~~~~~ 540 (552)
+||+++||++.++|++ |+||+||++ ||+|||.+ |+..|.. .++++|.+++.+||++|+.++++.+
T Consensus 189 efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~f---L~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s 263 (335)
T 4fp9_B 189 QYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIY---LERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTS 263 (335)
T ss_dssp HHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHH---HHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCC
T ss_pred HHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHH---HHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcC
Confidence 9999999999999997 999999999 99999995 5555553 2367899999999999999999999
Q ss_pred CCchHhHhhh
Q 039791 541 PAAPKQWLEC 550 (552)
Q Consensus 541 p~~~~~~~~~ 550 (552)
++..+.|.+-
T Consensus 264 ~eey~~F~k~ 273 (335)
T 4fp9_B 264 VEEFQVFKKL 273 (335)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.97 E-value=5e-30 Score=257.34 Aligned_cols=241 Identities=15% Similarity=0.191 Sum_probs=204.1
Q ss_pred HHHHHHHHhCCCChhhHHHHHhhhccccccChh-hHHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHH
Q 039791 129 LNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQ-DLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLF 207 (552)
Q Consensus 129 ~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~-~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~ 207 (552)
.+.+++|.++|++.++|.+...-+|.++.++++ .+++++++|.++ |++++++++++.++|++|.. +++. +.|
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~l-G~~~~~i~~il~~~P~lL~~---~~e~-l~p-- 78 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDV-GIEDNQLGAFLTKNHAIFSE---DLEN-LKT-- 78 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHH-TCCGGGHHHHHHHCTTGGGS---CHHH-HHH--
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHc-CCCHHHHHHHHHhCChhhhC---CHHH-HHH--
Confidence 488999999999999998877777888999997 699999999999 99999999999999999999 6654 555
Q ss_pred HHHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHH-HhcCCChhHH
Q 039791 208 DDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYF-CRFGVGNEDV 286 (552)
Q Consensus 208 ~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL-~~lG~~~~~i 286 (552)
+++||+++|+++++|++++.++|++|..+++ ++.++++|| .++|++.+++
T Consensus 79 ----------------------------~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i 129 (270)
T 3m66_A 79 ----------------------------RVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKT 129 (270)
T ss_dssp ----------------------------HHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHH
T ss_pred ----------------------------HHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHH
Confidence 4555668999999999999999999999986 699999999 5899999999
Q ss_pred HHHHhhCCceecccccccHhhHHHHH-hhcCCCHHHHHHHHHhCCcccccccccchHHHHHhCCchHHHHHHHHcccccc
Q 039791 287 GLLLLKSPEILSFDLETQVISVKGLL-NHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKL 365 (552)
Q Consensus 287 ~~il~~~P~iL~~s~e~~L~~~v~fL-~~lG~s~~~i~~~l~~~P~iL~~~~lk~~~~~L~~lGv~~~l~~iI~~~~~~l 365 (552)
.+++.++|.+++++.+ +++++++++ .++|++.++|.+++.++|++|+.+
T Consensus 130 ~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s----------------------------- 179 (270)
T 3m66_A 130 RDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN----------------------------- 179 (270)
T ss_dssp HHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-----------------------------
T ss_pred HHHHHhCCcceeechH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheec-----------------------------
Confidence 9999999999999975 599999975 679999999999999999999864
Q ss_pred cccccccCChhhhhHhhccchhhhhccCCCchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH-HcCCc
Q 039791 366 LGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL-RNGVA 444 (552)
Q Consensus 366 ~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~-~~G~s 444 (552)
.++++++++||. ++|++
T Consensus 180 --------------------------------------------------------------~~~l~~k~~fL~~~mg~~ 197 (270)
T 3m66_A 180 --------------------------------------------------------------KMKLTETFDFVHNVMSIP 197 (270)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHTTSCCC
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHhCCC
Confidence 346788999998 89999
Q ss_pred hHHHHHHHhhcCcccccChhhHHHHHHHHHHh--hCCChHHHhhcCc---ccccccCCcchhHH
Q 039791 445 FSKLCMMIRLTPKILNQNPETIEQKLDFLCQD--LGSSLDYLYAFPT---FLCFDLEYRIKPRY 503 (552)
Q Consensus 445 ~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~--mg~~~~~l~~~P~---~L~ysle~rikpR~ 503 (552)
.++ |.++|++|+||.|+|+||+.||..- .|+...+. .++. +|..| |++...|+
T Consensus 198 ~~~----i~~~P~~l~~Sleri~pR~~~l~~L~~~g~~~~~~-~~~~L~~~l~~s-d~~F~~~~ 255 (270)
T 3m66_A 198 HHI----IVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKP-NYISLDKLVSIP-DEIFCEEI 255 (270)
T ss_dssp HHH----HHHCGGGGGSCHHHHHHHHHHHHHHTCCCCCTTSS-SCCCHHHHHHSC-HHHHHHHT
T ss_pred HHH----HHhCchHhhCCHHHHHHHHHHHHHhhccCCCCCCC-CCCCHHHHhcCC-HHHHHHHH
Confidence 977 4699999999999999999999762 24433221 2233 45555 33554443
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.90 E-value=4.2e-23 Score=211.11 Aligned_cols=181 Identities=17% Similarity=0.269 Sum_probs=161.4
Q ss_pred hHHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHh
Q 039791 162 DLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFY 241 (552)
Q Consensus 162 ~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~ 241 (552)
++...+..|.++ ||++++|++++..+|.++.. + +.+ ++.+|.
T Consensus 45 ~~e~~l~~L~d~-Gfs~~~i~~il~~~P~il~~---~----l~~------------------------------~i~~L~ 86 (335)
T 4fp9_B 45 ELERVMSSLLDM-GFSNAHINELLSVRRGASLQ---Q----LLD------------------------------IISEFI 86 (335)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHCSSCCHH---H----HHH------------------------------HHHHHH
T ss_pred cHHHHHHHHHHC-CCCHHHHHHHHHhCcccchh---H----HHH------------------------------HHHHHH
Confidence 467888899999 99999999999999999766 2 333 455666
Q ss_pred hCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHHh-hcCCCHH
Q 039791 242 DFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLN-HLGLSAK 320 (552)
Q Consensus 242 ~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~-~lG~s~~ 320 (552)
.+|++.++|+++|.++|++|..++ +++.++++||+++|++.++|.+++.++|++++++.+ .+..++.+|. ++|++.+
T Consensus 87 ~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ 164 (335)
T 4fp9_B 87 LLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQ 164 (335)
T ss_dssp HTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHH
T ss_pred HcCCCHHHHHHHHHhChhhccCCH-HHHHHHHHHHHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHH
Confidence 899999999999999999999887 689999999999999999999999999999999976 5888888886 5999999
Q ss_pred HHHHHHHhCCcccccccccchHHHHHhCCchHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHH
Q 039791 321 ELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTM 400 (552)
Q Consensus 321 ~i~~~l~~~P~iL~~~~lk~~~~~L~~lGv~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~ 400 (552)
+|.+++.++|++|+++
T Consensus 165 ev~~mv~r~P~lL~~S---------------------------------------------------------------- 180 (335)
T 4fp9_B 165 QVTKILHSCPSVLRED---------------------------------------------------------------- 180 (335)
T ss_dssp HHHHHHHHCGGGGTSC----------------------------------------------------------------
T ss_pred HHHHHHHhCChhhhCC----------------------------------------------------------------
Confidence 9999999999999864
Q ss_pred HHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH-HcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCC
Q 039791 401 NKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL-RNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGS 479 (552)
Q Consensus 401 ~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~ 479 (552)
.++|++|++||. +||++.++|. + |++|+||.++|++|..||.. +|.
T Consensus 181 ---------------------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 181 ---------------------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp ---------------------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred ---------------------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence 346788999999 9999998864 3 99999999999999999987 686
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.03 E-value=2.4e-09 Score=93.49 Aligned_cols=184 Identities=20% Similarity=0.315 Sum_probs=147.4
Q ss_pred HHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHHhhcCCCHHHHHHHHHhCCcccccccccchHHHHHhCCc
Q 039791 271 QKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDL 350 (552)
Q Consensus 271 ~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~~lG~s~~~i~~~l~~~P~iL~~~~lk~~~~~L~~lGv 350 (552)
..+.-+.-+|+.++-++-++.+.|+++...+ -.++.+-.||..+|+....+.+++-.+|.++++..
T Consensus 35 diisefillglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrq------------- 100 (239)
T 4fzv_B 35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ------------- 100 (239)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-------------
T ss_pred HHHHHHHhhcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-------------
Confidence 3455566689999999999999999999887 45899999999999999999999999999998640
Q ss_pred hHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhh
Q 039791 351 QDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSE 430 (552)
Q Consensus 351 ~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~ 430 (552)
. .
T Consensus 101 -q-----------------------------------------------------------------------------d 102 (239)
T 4fzv_B 101 -Q-----------------------------------------------------------------------------D 102 (239)
T ss_dssp -H-----------------------------------------------------------------------------H
T ss_pred -h-----------------------------------------------------------------------------h
Confidence 0 1
Q ss_pred HHHHHHHHH-HcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCCChHHHhhcCcccccccCCcchhHHHHHHHH
Q 039791 431 LQERFDCLL-RNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWL 509 (552)
Q Consensus 431 L~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~l~~~P~~L~ysle~rikpR~~~~~~L 509 (552)
+...+..|. +.-|+.++|..++..||.+|.-+...++-|++|-.-.||+..-+|++ ..||.||+. +|+.|+-.++.|
T Consensus 103 indtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerl 180 (239)
T 4fzv_B 103 INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERL 180 (239)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHH
T ss_pred HhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHh
Confidence 112333444 56788899999999999999999999999999988899999999988 689999999 999999966665
Q ss_pred HH------CCCC-CCccccccccccchhHHHHHhcccCCCchHhHh
Q 039791 510 VE------NGLC-TKNYSIASMVATSEKSFISRIYGIHPAAPKQWL 548 (552)
Q Consensus 510 ~~------~G~~-~~~~sl~~il~~sd~~F~~~~~~~~p~~~~~~~ 548 (552)
-. +|-. .+++-+.+++..|+.+|.++-....-+.-+++.
T Consensus 181 gryqtpdkkgqtqipnpllkdilrvseaeflartactsveefqvfk 226 (239)
T 4fzv_B 181 GRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFK 226 (239)
T ss_dssp TCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHHHHHHH
T ss_pred cccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHHHHHHH
Confidence 32 2211 124557789999999999998877666555543
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.13 E-value=2.3e-05 Score=68.44 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=121.1
Q ss_pred cchHHHHHHHHhCCCChhhHHHHHhhhccccccChhhHHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHH
Q 039791 126 SCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIAT 205 (552)
Q Consensus 126 ~~l~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~ 205 (552)
..+.+.+.-+--+|+.++-+.-++++.|.++..+.-.++.+-.||.++ |+....+.+++-+||.++....+|++ .
T Consensus 31 qqlldiisefillglnpepvcvvlkkspqllklpimqmrkrssylqkl-glgegklkrvlyccpeiftmrqqdin----d 105 (239)
T 4fzv_B 31 QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKL-GLGEGKLKRVLYCCPEIFTMRQQDIN----D 105 (239)
T ss_dssp CTTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHH-TTCSSCCHHHHHHCGGGGTSCHHHHH----H
T ss_pred HHHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHh-CCCccchhhheecCcHHHHHHHhhHh----H
Confidence 455666766777899999999999999999999998899999999999 99999999999999999998543333 2
Q ss_pred HHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHH-hcCCChh
Q 039791 206 LFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFC-RFGVGNE 284 (552)
Q Consensus 206 ~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~-~lG~~~~ 284 (552)
++.-|+ .++=++..++.+++..+|.++..+. ..+.-++.|-- .+|+...
T Consensus 106 tvrllk-----------------------------ekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhp 155 (239)
T 4fzv_B 106 TVRLLK-----------------------------EKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHP 155 (239)
T ss_dssp HHHHHH-----------------------------HHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHH
T ss_pred HHHHHH-----------------------------HhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCc
Confidence 333333 2477889999999999999999887 67888888766 7999888
Q ss_pred HHHHHHhhCCceecccccccHhhHHHHHhhcCC
Q 039791 285 DVGLLLLKSPEILSFDLETQVISVKGLLNHLGL 317 (552)
Q Consensus 285 ~i~~il~~~P~iL~~s~e~~L~~~v~fL~~lG~ 317 (552)
||.+ ..-+.+|+ ..++.+.-||..+|-
T Consensus 156 divk-----seylqysl-tkikqrhiylerlgr 182 (239)
T 4fzv_B 156 DIVK-----SEYLQYSL-TKIKQRHIYLERLGR 182 (239)
T ss_dssp HHHH-----TTGGGSCH-HHHHHHHHHHHHHTC
T ss_pred chhH-----HHHHHHHH-HHHHHHHhHHHHhcc
Confidence 7644 34577887 448999999988874
No 9
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=88.70 E-value=2 Score=46.78 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHhhc-----ChHHHHHHHHh--cCCCCChhhHHH---------HHHHHHhhcCcc
Q 039791 32 IKEAQQAVTEYLHYTKSIPFTYAEHISKH-----SLNTLSKLIAD--LGVSYSAPSFSS---------TFQRFLRYHPIN 95 (552)
Q Consensus 32 ~~~a~~~~~~yL~~~~gl~~~~A~~is~~-----sp~~~~~ll~~--~~~~~~~~~~~~---------~~~r~l~~~pi~ 95 (552)
.-||-.++..-|-..+||+.++-..|+.| +-+.+..|+-. ...+|+..+|-. .+....+.
T Consensus 272 ALeaV~~llp~L~~~~gls~~qvvaIAsn~GGkQALetV~~llp~L~~~~gltp~qvVaIAsn~GGkQALe~V~~l---- 347 (1047)
T 3ugm_A 272 ALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRL---- 347 (1047)
T ss_dssp HHHHHHHHSHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHSSSSCHHHHHHHHHH----
T ss_pred HHHHHHHHhhhhhccccCCHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCCHHHheeecccCccHHHHHHHHHH----
Confidence 34455556677776699999999999987 34444443332 125777766643 33333332
Q ss_pred hhHHHH-HhcCCCcccccccCCCcceeeccccchHHHHHHHHh-CCCChhhHHHHHhhhccccccChhhHHHHHHHH---
Q 039791 96 EFEFFF-ESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSS-FGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRL--- 170 (552)
Q Consensus 96 ~~e~f~-eslGl~~~~~~~~~P~~l~~ls~d~~l~~~~~~L~~-~G~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L--- 170 (552)
++.+ ..-|++|..+-.+-..+= .-..-+.+....-.||. +|++.++|.+|-.. -.-..+..+.+.+
T Consensus 348 --lpvL~~~~gls~~qvVaIAsn~G-GkQALe~V~~llp~L~~~~gls~~~vvaiA~~------GG~qALe~V~~L~p~l 418 (1047)
T 3ugm_A 348 --LPVLCQAHGLTPDQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTPDQVVAIASN------GGKQALETVQRLLPVL 418 (1047)
T ss_dssp --HHHHHTTSCCCHHHHHHHHSSTT-HHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH------THHHHHHHHHHHHHHH
T ss_pred --hhhhhhhccCCHHHhhhhhhcCc-hHHHHHHHHHhhhhhhhhcCCCHHHHHHHhcc------cchhHHHHHhhccchh
Confidence 2233 257888877766511100 00001234445556776 89999988876520 0011244444432
Q ss_pred -HhhcCCChhHHhhHhhcC
Q 039791 171 -KNYYGFSNVILVGICLGF 188 (552)
Q Consensus 171 -~~l~G~s~~~i~~lv~~~ 188 (552)
++. ||++++|.+|-...
T Consensus 419 ~~~~-glt~~qvv~IAsn~ 436 (1047)
T 3ugm_A 419 CQAH-GLTPDQVVAIASHD 436 (1047)
T ss_dssp HTTS-SCCHHHHHHHHSST
T ss_pred hhhc-CCCHHHhhhhhccC
Confidence 356 99999888887643
No 10
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=83.42 E-value=2.3 Score=43.43 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=25.6
Q ss_pred HhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCC
Q 039791 233 ICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVG 282 (552)
Q Consensus 233 ~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~ 282 (552)
....+..|.++||+++++.+.+... .++....++||.+ |++
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~--------~nn~~~A~e~L~~-gip 208 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT-GIP 208 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHS--------CSSTTHHHHTTTT-SST
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh-CCC
Confidence 4456777777777777777776654 1355666777753 444
No 11
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=81.44 E-value=22 Score=29.85 Aligned_cols=105 Identities=14% Similarity=0.107 Sum_probs=60.5
Q ss_pred HHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhC
Q 039791 164 TAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDF 243 (552)
Q Consensus 164 ~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~l 243 (552)
+..+.-|.+. ||+...+.+.+..+- + +....++||-.. .-|.+.
T Consensus 9 ~~~v~~l~~M-GFp~~~~~kAl~~~g----------~-~~e~amewL~~h------------------------~~L~d~ 52 (118)
T 4ae4_A 9 RQCVETVVNM-GYSYECVLRAMKAAG----------A-NIEQILDYLFAH------------------------GQLCEK 52 (118)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHC----------S-CHHHHHHHHHHH------------------------HHHHHT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHC----------c-CHHHHHHHHHHh------------------------chhccc
Confidence 3566777788 888888877766431 1 466777777531 113456
Q ss_pred CCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHHhh
Q 039791 244 RFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNH 314 (552)
Q Consensus 244 G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~~ 314 (552)
|+++.++...+..+..- ......-...+.-|.++|++.+.+.+.+..+- +++..-++||-.
T Consensus 53 ~~d~~~~e~~l~~~~~~--~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~ 113 (118)
T 4ae4_A 53 GFDPLLVEEALEMHQCS--EEKMMEFLQLMSKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMA 113 (118)
T ss_dssp TCCHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred CCChhhhHHHHHhccCC--ccccccCHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence 77776666666543210 00001123456666777777777777766532 445556666643
No 12
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=81.13 E-value=2.9 Score=30.15 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=21.7
Q ss_pred HhhCCceecccccccHhhHHHHHhhcCCCHHHHHHHHHh
Q 039791 290 LLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEM 328 (552)
Q Consensus 290 l~~~P~iL~~s~e~~L~~~v~fL~~lG~s~~~i~~~l~~ 328 (552)
+.++|.+-..+ +..+++||++-|++.+||..++.+
T Consensus 19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 44556665543 455777777777777777666654
No 13
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=76.80 E-value=20 Score=39.28 Aligned_cols=199 Identities=12% Similarity=0.114 Sum_probs=92.6
Q ss_pred HHhcCCCcccccccCCCcceeeccccchHHHHHHHH-hCCCChhhHHHHHhhhccccccChhh--HHHHHHHH---H-hh
Q 039791 101 FESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALS-SFGFPWDKLGKLYKEEVSIFSQSSQD--LTAKLSRL---K-NY 173 (552)
Q Consensus 101 ~eslGl~~~~~~~~~P~~l~~ls~d~~l~~~~~~L~-~~G~~~~~i~~~~~~~P~ll~~~~~~--l~~~l~~L---~-~l 173 (552)
.+.-|++|.++..+-..+= .-..-+.+...+-.|| .+|++.++|.+|- +-+-++ ++.+.+.+ . ..
T Consensus 419 ~~~~glt~~qvv~IAsn~G-GkQALe~V~~llp~L~~~~glt~aqvVaIA-------sn~GGkQALeaV~~llpvl~~~~ 490 (1047)
T 3ugm_A 419 CQAHGLTPDQVVAIASHDG-GKQALETVQRLLPVLCQTHGLTPAQVVAIA-------SHDGGKQALETVQQLLPVLCQAH 490 (1047)
T ss_dssp HTTSSCCHHHHHHHHSSTT-THHHHHHHHHHHHHHHTTSCCCHHHHHHHS-------SSTTHHHHHHHHHHHHHHHHHHS
T ss_pred hhhcCCCHHHhhhhhccCc-hHHHHHHHHHHhHHhhcccCCCHHHHHHHH-------hcCcHHHHHHHHHHHHHHHHHhc
Confidence 4567777777666511100 0000123445555566 5889998887753 223332 44433332 2 36
Q ss_pred cCCChhHHhhHhhcCccccccccccccccHHHHHHHHhh-hh------hcccccccc-cCCccchhhHhHHHHHHh-hCC
Q 039791 174 YGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKT-VF------VDFGLMSSV-EGNVEVWYDICRKIRVFY-DFR 244 (552)
Q Consensus 174 ~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~-l~------~~~~~~~l~-~~~~~s~~~~~~~l~fl~-~lG 244 (552)
||+.++|.+|...+-- ..-...+..|.- +. .+.+...-+ .++.-..+.+.+.+--|+ ..|
T Consensus 491 -gls~~qvvaiA~n~GG----------kQALeaV~~l~p~l~~~~gls~~qVVaIAsN~GGkQALeaV~~~lp~Lr~a~~ 559 (1047)
T 3ugm_A 491 -GLTPDQVVAIASNIGG----------KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 559 (1047)
T ss_dssp -CCCSHHHHHHHSSTTH----------HHHHHHHHHHSGGGTTTTCCCSHHHHHHHSSTTCHHHHHHHHHHHHHHTTTSC
T ss_pred -CCCHHHHHHHHhccch----------HHHHHHHHHhhhhhccccCCCHHHhhhhhcCCcHHHHHHHHHHHhHHHHHHhC
Confidence 9999998888754210 111111111110 10 000000000 111222333444444555 489
Q ss_pred CChhHHHHHHhhCCcceecCchhhHHHHHHH---HH-hcCCChhHHHHHHhhCCceecccccccHhhHHHHHh-hcCCCH
Q 039791 245 FEKGKLGELMGRNKSIFLDYPEEVLVQKVEY---FC-RFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLN-HLGLSA 319 (552)
Q Consensus 245 ~~~~~i~~li~~~P~lL~~~~~~~l~~~v~f---L~-~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~-~lG~s~ 319 (552)
++.+++..|-... .-..-++...+. |+ ..|++.++|..|-...----. + ..+..-.-.|. ..|++.
T Consensus 560 ls~~qVVaIAsN~------GGkQALeaV~~~lpvL~~a~gLS~~qVVaIAsn~GGkQA--L-eaV~~llpvL~~~~~Ls~ 630 (1047)
T 3ugm_A 560 LTPDQVVAIASNG------GGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQA--L-ETVQRLLPVLCQAHGLTP 630 (1047)
T ss_dssp CTHHHHHHHTTST------THHHHHHHHHHHSHHHHHHHCCCSHHHHTTTTSTTSHHH--H-HHHHHHHHHHHHHSCCCS
T ss_pred CCHHHeeeeccCC------chHHHHHHHHHHHHHHHHHhCCCHHHeeeeccCCchHHH--H-HHHHHhhHHHHhhccCCH
Confidence 9998887765432 111223333333 33 579999988776543221100 0 11222232333 378888
Q ss_pred HHHHHHHH
Q 039791 320 KELKSVSE 327 (552)
Q Consensus 320 ~~i~~~l~ 327 (552)
++|..+-.
T Consensus 631 ~qVVaIAs 638 (1047)
T 3ugm_A 631 AQVVAIAS 638 (1047)
T ss_dssp HHHHHHHC
T ss_pred HHeeeecc
Confidence 88776544
No 14
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=74.29 E-value=2.7 Score=42.88 Aligned_cols=43 Identities=9% Similarity=0.185 Sum_probs=29.3
Q ss_pred chHHHHHHHHhCCCChhhHHHHHhhhccccccChhhHHHHHHHHHhhcCCCh
Q 039791 127 CLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSN 178 (552)
Q Consensus 127 ~l~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L~~l~G~s~ 178 (552)
...+.+.-|.++||+++.+.+.++.+ ..+++ .-++||-+ |++.
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~----~nn~~---~A~e~L~~--gip~ 209 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRAS----YNNPH---RAVEYLLT--GIPG 209 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS----CSSTT---HHHHTTTT--SSTT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHc----CCCHH---HHHHHHHh--CCCc
Confidence 46678999999999999998877432 22443 45667743 5443
No 15
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=70.40 E-value=23 Score=29.76 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=55.6
Q ss_pred HHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHH------hcCCChhHHHHHHhhCCceecccccccHhhHH
Q 039791 236 KIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFC------RFGVGNEDVGLLLLKSPEILSFDLETQVISVK 309 (552)
Q Consensus 236 ~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~------~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v 309 (552)
.+.-|.++||+.....+.+... . ++....++||. +.|++..++-..+..+..--.-. ..-...+
T Consensus 11 ~v~~l~~MGFp~~~~~kAl~~~----g----~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~v 80 (118)
T 4ae4_A 11 CVETVVNMGYSYECVLRAMKAA----G----ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQLM 80 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH----C----SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH----C----cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHHH
Confidence 5677889999999999988775 1 24556666664 46788777766665432100000 0112457
Q ss_pred HHHhhcCCCHHHHHHHHHhC
Q 039791 310 GLLNHLGLSAKELKSVSEMY 329 (552)
Q Consensus 310 ~fL~~lG~s~~~i~~~l~~~ 329 (552)
.-|.++|++.+.+.+.|..+
T Consensus 81 ~~L~eMGF~~~~a~~AL~~~ 100 (118)
T 4ae4_A 81 SKFKEMGFELKDIKEVLLLH 100 (118)
T ss_dssp HHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHc
Confidence 77888999999998888765
No 16
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=70.15 E-value=3.7 Score=29.44 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHHcC
Q 039791 396 PRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNG 442 (552)
Q Consensus 396 ~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~~G 442 (552)
.+.+.++++-|.++||.......+|+.. +...++.-+++|.+-+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~---t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIA---TGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHH---HTSCHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHH---hCCCHHHHHHHHHHcC
Confidence 4567888999999999443322244443 3346777777777543
No 17
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=68.73 E-value=7.9 Score=29.36 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=23.1
Q ss_pred HhhCCceecccccccHhhHHHHHhhcCCCHHHHHHHHHhC
Q 039791 290 LLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMY 329 (552)
Q Consensus 290 l~~~P~iL~~s~e~~L~~~v~fL~~lG~s~~~i~~~l~~~ 329 (552)
+.++|.|-..+ +..+++||++-|++.+||..++.+.
T Consensus 24 FLqdp~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 24 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHCSTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhCChhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 34566665544 4557777777777777777766653
No 18
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=66.65 E-value=10 Score=27.22 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=27.6
Q ss_pred HHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhh
Q 039791 253 LMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLK 292 (552)
Q Consensus 253 li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~ 292 (552)
-+.++|.+-. ..+..+++||++-|++.++|...+.+
T Consensus 18 ~FL~dp~V~~----sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 18 KFLQNSRVRQ----SPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHCTTGGG----SCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhCChhhhc----CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3556777754 24678899999999999999888765
No 19
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.88 E-value=8.6 Score=26.95 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHhh
Q 039791 432 QERFDCLLRNGVAFSKLCMMIRL 454 (552)
Q Consensus 432 ~~r~~~L~~~G~s~~~v~~mi~~ 454 (552)
+++++-|.+|||+++++...++.
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRA 31 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34445555555555555544443
No 20
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=56.78 E-value=1e+02 Score=27.04 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=46.1
Q ss_pred cCcchhHHHHHhcCCCcccccccCCCcceeeccccchHHHHHHHHhCC-CChhhHHHHHhhhccccccChhhHHHHHHHH
Q 039791 92 HPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFG-FPWDKLGKLYKEEVSIFSQSSQDLTAKLSRL 170 (552)
Q Consensus 92 ~pi~~~e~f~eslGl~~~~~~~~~P~~l~~ls~d~~l~~~~~~L~~~G-~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L 170 (552)
|...++..-+..-|+++ +.+...++.|.+.| ++.......+.+.-.--++++..|.. -|
T Consensus 32 ~s~~EL~~KL~~kg~~~-----------------e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G~~~I~~---eL 91 (162)
T 3dfg_A 32 HSKKELNRKLQARGIEP-----------------EAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYGPLHIRA---EL 91 (162)
T ss_dssp CCHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCCHHHHHH---HH
T ss_pred hhHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccHHHHHH---HH
Confidence 44445555566566543 34557788898888 44445555554432212444444443 56
Q ss_pred HhhcCCChhHHhhHhhcC
Q 039791 171 KNYYGFSNVILVGICLGF 188 (552)
Q Consensus 171 ~~l~G~s~~~i~~lv~~~ 188 (552)
... |++.+.|...+...
T Consensus 92 ~~K-GI~~~~I~~al~~~ 108 (162)
T 3dfg_A 92 GTH-GLDSDAVSAAMATF 108 (162)
T ss_dssp HHT-TCCHHHHHHHHTTC
T ss_pred HHc-CCCHHHHHHHHHhC
Confidence 788 99999888888764
No 21
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=56.41 E-value=10 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHhcCccCCc
Q 039791 396 PRHTMNKLTFLHGIGYGENT 415 (552)
Q Consensus 396 ~~~~~~k~~fl~~lG~~~~~ 415 (552)
++...+.++-|.++||++++
T Consensus 8 ~~~~~~~Ia~Lm~mGFsr~~ 27 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGYAFEE 27 (52)
T ss_dssp ---CHHHHHHHHHTTCCHHH
T ss_pred CCChHHHHHHHHHcCCCHHH
Confidence 33445677777777777664
No 22
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.20 E-value=17 Score=26.05 Aligned_cols=14 Identities=0% Similarity=0.159 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHcCC
Q 039791 430 ELQERFDCLLRNGV 443 (552)
Q Consensus 430 ~L~~r~~~L~~~G~ 443 (552)
.|++.++||.++++
T Consensus 37 Gle~AmewL~k~~~ 50 (54)
T 2cos_A 37 SIEAALEYISKMSG 50 (54)
T ss_dssp CHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHhcC
Confidence 35555555554444
No 23
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.43 E-value=14 Score=25.90 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred CchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHH
Q 039791 395 TPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLR 440 (552)
Q Consensus 395 ~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~ 440 (552)
+.....++++.|.++||+++ ++..+++.+...++.-++||.+
T Consensus 4 ~~~~~~~~i~~L~~MGF~~~----~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 4 TGSEYETMLTEIMSMGYERE----RVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CSHHHHHHHHHHHHTTCCHH----HHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCccCHHHHHHHHHcCCCHH----HHHHHHHHhCCCHHHHHHHHHh
Confidence 44567889999999999776 3455666666678888888875
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=50.91 E-value=10 Score=26.97 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHH
Q 039791 396 PRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCL 438 (552)
Q Consensus 396 ~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L 438 (552)
.+.+.++++.|.++||.......+|+.. +...++.-+++|
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~---t~gn~e~A~e~L 48 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIA---TGGDINAAIERL 48 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHH---hCCCHHHHHHHH
Confidence 3456788888999998443322234443 223455555555
No 25
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=50.88 E-value=8.7 Score=33.31 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCChhhHHHHhhc--ChHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCcch--hHHHHHhcCCCccccc
Q 039791 37 QAVTEYLHYTKSIPFTYAEHISKH--SLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINE--FEFFFESIGIDHAEVS 112 (552)
Q Consensus 37 ~~~~~yL~~~~gl~~~~A~~is~~--sp~~~~~ll~~~~~~~~~~~~~~~~~r~l~~~pi~~--~e~f~eslGl~~~~~~ 112 (552)
..++|-|..+.=++.+|++.+..+ .+.=+..||+ -|..-++..++.+..++.-.+-+. +.|.|+.||.+|++..
T Consensus 44 ~~LLD~LL~~gvLs~EE~EiV~~~~T~~dKaRrLLD--lV~sKGe~a~e~Ll~~Lqql~day~dl~pwl~ei~~~p~~~~ 121 (144)
T 4e9m_A 44 QCLVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILD--LVQSKGEEVSEFFLYLLQQLADAYVDLRPWLLEIGFSPSLLT 121 (144)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHTSSSHHHHHHHHHH--HHHHHCHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCC-----
T ss_pred HHHHHHHHHcCCCCHHHHHHHhccCChHHHHHHHHH--HHHHhhHHHHHHHHHHHHHccccccchhHHHHHhCCCcHHHh
Confidence 478899997888999999999776 4555677777 454334455555666666544443 4499999999998866
Q ss_pred cc
Q 039791 113 CF 114 (552)
Q Consensus 113 ~~ 114 (552)
.-
T Consensus 122 ~~ 123 (144)
T 4e9m_A 122 QS 123 (144)
T ss_dssp --
T ss_pred cc
Confidence 43
No 26
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=48.46 E-value=14 Score=28.08 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=7.8
Q ss_pred HHHhhcCCCHHHHHHHH
Q 039791 310 GLLNHLGLSAKELKSVS 326 (552)
Q Consensus 310 ~fL~~lG~s~~~i~~~l 326 (552)
+.|+++|+...+|-+++
T Consensus 42 ~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVM 58 (72)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHHcCCchhhHHHHH
Confidence 44445555444444433
No 27
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=48.25 E-value=18 Score=24.92 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHh
Q 039791 430 ELQERFDCLLRNGVAFSKLCMMIR 453 (552)
Q Consensus 430 ~L~~r~~~L~~~G~s~~~v~~mi~ 453 (552)
.|...+.-|+++||+++++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 456667777778888877766554
No 28
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=47.73 E-value=28 Score=26.31 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=28.2
Q ss_pred HhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhC
Q 039791 254 MGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKS 293 (552)
Q Consensus 254 i~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~ 293 (552)
+.++|.+-. ..+..+++||++-|++.+||...+.+.
T Consensus 24 FLqdp~V~~----sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 24 FLQNSRVRQ----SPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHCSTTGGG----SCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhCChhhhh----CCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456788754 236789999999999999998888764
No 29
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=47.31 E-value=37 Score=24.02 Aligned_cols=38 Identities=5% Similarity=0.030 Sum_probs=22.0
Q ss_pred HHHHHHhhCCC-ChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcC
Q 039791 235 RKIRVFYDFRF-EKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFG 280 (552)
Q Consensus 235 ~~l~fl~~lG~-~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG 280 (552)
..++-|.++|| +.......+... ..++...+++|.+-+
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHHcC
Confidence 45666677777 555555554432 235666677766543
No 30
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=44.15 E-value=17 Score=25.05 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH
Q 039791 397 RHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL 439 (552)
Q Consensus 397 ~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~ 439 (552)
+.+.++++-|.++||.+.....+|+.. +...+..-+++|.
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~---~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRR---SGGSVQGALDSLL 44 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHH---HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHH---hCCCHHHHHHHHH
Confidence 456778888888888654322244443 3344445555553
No 31
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.10 E-value=14 Score=26.44 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHH
Q 039791 397 RHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLR 440 (552)
Q Consensus 397 ~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~ 440 (552)
..+.++++-|+++||.+.....+||.. +.-.++.-+++|.+
T Consensus 7 ~~~~~~l~~L~~MGF~d~~~n~~AL~~---~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 7 GHFQVQLEQLRSMGFLNREANLQALIA---TGGDVDAAVEKLRQ 47 (54)
T ss_dssp CSSHHHHHHHHHHTCCCHHHHHHHHHH---HTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcHHHHHHHHHH---cCCCHHHHHHHHHh
Confidence 356788999999999776432244443 34456666777764
No 32
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=44.03 E-value=15 Score=24.72 Aligned_cols=23 Identities=9% Similarity=-0.068 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCchHHHHHHHhhc
Q 039791 433 ERFDCLLRNGVAFSKLCMMIRLT 455 (552)
Q Consensus 433 ~r~~~L~~~G~s~~~v~~mi~~~ 455 (552)
+.++-|.+|||+++++.+.+..+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 45677778888887777766654
No 33
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.61 E-value=26 Score=24.03 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=9.7
Q ss_pred HHHHHHcCCchHHHHHHHhh
Q 039791 435 FDCLLRNGVAFSKLCMMIRL 454 (552)
Q Consensus 435 ~~~L~~~G~s~~~v~~mi~~ 454 (552)
++-|.+|||+.+.+...++.
T Consensus 13 v~~L~~MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 13 LQQLMDMGFTREHAMEALLN 32 (47)
T ss_dssp HHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 44444555555554444444
No 34
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.72 E-value=34 Score=24.54 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=29.2
Q ss_pred CchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHHcC
Q 039791 395 TPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNG 442 (552)
Q Consensus 395 ~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~~G 442 (552)
+++....+++-|.++||...+. ...++......++.-++.|...|
T Consensus 5 ~ee~~a~~L~~L~eMGF~D~~~---N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 5 SSGQTAALMAHLFEMGFCDRQL---NLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp SCTTHHHHHHHHHHHTCCCHHH---HHHHHTTTTTCHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHcCCCcHHH---HHHHHHHcCCCHHHHHHHHHhcc
Confidence 4556677889999999966543 23344555666667777666544
No 35
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=40.16 E-value=53 Score=33.16 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=12.6
Q ss_pred hHHHHHHHHhCCCChhhHHHHH
Q 039791 128 LLNAACALSSFGFPWDKLGKLY 149 (552)
Q Consensus 128 l~~~~~~L~~~G~~~~~i~~~~ 149 (552)
+-..-..|-..||+..+|..+-
T Consensus 29 va~~h~~l~~~g~t~~~i~~is 50 (463)
T 4hpz_A 29 VAQHHEALVGHGFTHAHIVALS 50 (463)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHhcCCCHHHHHHhh
Confidence 3344445666677776666643
No 36
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=38.02 E-value=1.6e+02 Score=29.83 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=35.8
Q ss_pred HHhCCCChhhHHHHHhhhccccccChhhHHHHHHHHHhhcCCChhHHhhHhhcCcccccc
Q 039791 135 LSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAG 194 (552)
Q Consensus 135 L~~~G~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~ 194 (552)
|+.+|.+.+++.++= |.. ...+..--..|-.. ||+..+|..|-. +|.-|..
T Consensus 8 l~~lgys~~q~~k~k---~~~----~s~va~~h~~l~~~-g~t~~~i~~is~-~~~al~~ 58 (463)
T 4hpz_A 8 LRTLGYSQQQQEKIK---PKV----RSTVAQHHEALVGH-GFTHAHIVALSQ-HPAALGT 58 (463)
T ss_dssp GGGGTCCHHHHHHHC---GGG----HHHHHHHHHHHHHT-TCCHHHHHHHTT-STHHHHH
T ss_pred HHHhccCHHHHHHhh---HHH----HHHHHHHHHHHHhc-CCCHHHHHHhhc-cHhHHHH
Confidence 678899999998854 322 23455566677788 999999987654 4665544
No 37
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.96 E-value=47 Score=26.03 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=6.9
Q ss_pred HHHHHHHHhcCccC
Q 039791 400 MNKLTFLHGIGYGE 413 (552)
Q Consensus 400 ~~k~~fl~~lG~~~ 413 (552)
.++++-|.++||++
T Consensus 30 ee~I~~Lv~MGF~~ 43 (83)
T 1veg_A 30 QESINQLVYMGFDT 43 (83)
T ss_dssp HHHHHHHHHHSCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 44455555555544
No 38
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=37.88 E-value=30 Score=22.47 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHhhc
Q 039791 432 QERFDCLLRNGVAFSKLCMMIRLT 455 (552)
Q Consensus 432 ~~r~~~L~~~G~s~~~v~~mi~~~ 455 (552)
.+.++-|.++||+.+++...+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 345666777788877766655543
No 39
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=37.47 E-value=21 Score=25.96 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=23.8
Q ss_pred chhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH
Q 039791 396 PRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL 439 (552)
Q Consensus 396 ~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~ 439 (552)
.+.+.++++-|.++||.+.....+||.. +...++.-+++|.
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~---~~gnve~Ave~L~ 54 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRR---SGGSVQGALDSLL 54 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHH---HTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHH---hCCCHHHHHHHHH
Confidence 4557778888888888554332244443 3344555556654
No 40
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.32 E-value=29 Score=24.73 Aligned_cols=22 Identities=9% Similarity=0.321 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHh
Q 039791 432 QERFDCLLRNGVAFSKLCMMIR 453 (552)
Q Consensus 432 ~~r~~~L~~~G~s~~~v~~mi~ 453 (552)
..++.-|+++||+++++.+.+.
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~ 31 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALV 31 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4456777777887777766554
No 41
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.25 E-value=26 Score=25.95 Aligned_cols=19 Identities=5% Similarity=0.008 Sum_probs=8.2
Q ss_pred HHHHHHcCCchHHHHHHHh
Q 039791 435 FDCLLRNGVAFSKLCMMIR 453 (552)
Q Consensus 435 ~~~L~~~G~s~~~v~~mi~ 453 (552)
++-|++|||+.+++...++
T Consensus 13 I~~L~~MGF~~~~a~~AL~ 31 (63)
T 1wji_A 13 LKHITEMGFSKEASRQALM 31 (63)
T ss_dssp HHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 3344444444444443333
No 42
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=36.75 E-value=66 Score=22.79 Aligned_cols=40 Identities=8% Similarity=0.029 Sum_probs=23.6
Q ss_pred hHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCC
Q 039791 234 CRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGV 281 (552)
Q Consensus 234 ~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~ 281 (552)
...++-|-++|++.+++.+.+... .+++.-...+|.++.+
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a--------~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIA--------QNNVEVARSILREFAF 51 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHhcC
Confidence 345666667777777776666543 2455555556655543
No 43
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=36.74 E-value=29 Score=24.83 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHh
Q 039791 430 ELQERFDCLLRNGVAFSKLCMMIR 453 (552)
Q Consensus 430 ~L~~r~~~L~~~G~s~~~v~~mi~ 453 (552)
.....+.-|+++|||++++.+.+.
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHH
Confidence 344556666666666666655443
No 44
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.63 E-value=21 Score=27.34 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=8.0
Q ss_pred HHHHHHHHHhcCccCC
Q 039791 399 TMNKLTFLHGIGYGEN 414 (552)
Q Consensus 399 ~~~k~~fl~~lG~~~~ 414 (552)
..++++-|.++||+++
T Consensus 29 ~ee~I~~L~eMGF~r~ 44 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRT 44 (73)
T ss_dssp CHHHHHHHHTTTCCHH
T ss_pred cHHHHHHHHHcCCCHH
Confidence 3445555555555443
No 45
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.33 E-value=32 Score=25.87 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHHc
Q 039791 396 PRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRN 441 (552)
Q Consensus 396 ~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~~ 441 (552)
++.+..+++-|.++||.+.... +.+|..+...++.-+++|.+-
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an---~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNAN---LQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHH---HHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCcHHHH---HHHHHHcCCCHHHHHHHHHhC
Confidence 4567888999999998665432 334444556777788888753
No 46
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=35.73 E-value=2e+02 Score=25.58 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhh-----cCcchhHHHHHhcCCCcccccccCCCcceeeccccchHHHHHHHHhCC-CChhhHHHHHh
Q 039791 77 SAPSFSSTFQRFLRY-----HPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFG-FPWDKLGKLYK 150 (552)
Q Consensus 77 ~~~~~~~~~~r~l~~-----~pi~~~e~f~eslGl~~~~~~~~~P~~l~~ls~d~~l~~~~~~L~~~G-~~~~~i~~~~~ 150 (552)
....+.+...+-++| +...++..-+..-|+++..+. ..++.|.+.| ++.......+.
T Consensus 13 ~~~~~~~a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~~~ie-----------------~vl~~L~~~g~ldD~rfA~~~v 75 (177)
T 3e3v_A 13 LADDISKGYNAALNYLSYQLRTRKEVEDKLRSLDIHEDYIS-----------------EIINKLIDLDLINDKNYAESYV 75 (177)
T ss_dssp CHHHHHHHHHHHHHHHHSSCCCHHHHHTTSGGGTCCHHHHH-----------------HHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHcCCCHHHHH-----------------HHHHHHHHcCCCCHHHHHHHHH
Q ss_pred hhccccc-cChhhHHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccc
Q 039791 151 EEVSIFS-QSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEV 229 (552)
Q Consensus 151 ~~P~ll~-~~~~~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s 229 (552)
+.-.-.+ +++..|+. -|... |++.+.|...+...+.- +.......+++. ++-.-.....
T Consensus 76 r~~~~~~~~G~~~I~~---eL~~K-GI~~~~I~~al~~~~~~------de~e~a~~l~~K----------k~~~~~~~~~ 135 (177)
T 3e3v_A 76 RTMMNTSDKGPKVIKL---NLSKK-GIDDNIAEDALILYTDK------LQVEKGVTLAEK----------LANRYSHDSY 135 (177)
T ss_dssp HHHHHHCCCCHHHHHH---HHHTT-TCCHHHHHHHHTTSCHH------HHHHHHHHHHHH----------HHHHTTTSCH
T ss_pred HHHHHcccccHHHHHH---HHHHc-CCCHHHHHHHHHhCCch------hHHHHHHHHHHH----------HHhhccCCCh
Q ss_pred hhhHhHHHHHHhhCCCChhHHHHHHhh
Q 039791 230 WYDICRKIRVFYDFRFEKGKLGELMGR 256 (552)
Q Consensus 230 ~~~~~~~l~fl~~lG~~~~~i~~li~~ 256 (552)
...-....+||..-||+.+.|..++..
T Consensus 136 ~~~~~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 136 RNKQNKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHH
No 47
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.65 E-value=29 Score=27.30 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCC
Q 039791 432 QERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGS 479 (552)
Q Consensus 432 ~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~ 479 (552)
+++++-|++|||+++++...++.+- ..++.-++||.+..|-
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCCC
Confidence 5678899999999999988887543 3588889999998773
No 48
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.77 E-value=54 Score=23.98 Aligned_cols=38 Identities=13% Similarity=0.328 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhh
Q 039791 433 ERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDL 477 (552)
Q Consensus 433 ~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~m 477 (552)
+.++-|++|||+++++...++.+- . .++.-++||.+.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~----~---nve~A~e~L~~~~ 48 (63)
T 2dak_A 11 DCVTTIVSMGFSRDQALKALRATN----N---SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT----S---CSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC----C---CHHHHHHHHHhCC
Confidence 455666667777766666666542 1 3555566666643
No 49
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.69 E-value=30 Score=26.36 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=8.4
Q ss_pred HHHHHHcCCchHHHHHHHh
Q 039791 435 FDCLLRNGVAFSKLCMMIR 453 (552)
Q Consensus 435 ~~~L~~~G~s~~~v~~mi~ 453 (552)
++-|++|||+.+++.+.++
T Consensus 33 v~~L~~MGF~~~~a~~AL~ 51 (73)
T 1wiv_A 33 VDTLLSFGFAEDVARKALK 51 (73)
T ss_dssp HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 3444444444444444433
No 50
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.58 E-value=26 Score=26.80 Aligned_cols=42 Identities=10% Similarity=0.197 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHh
Q 039791 428 GSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQD 476 (552)
Q Consensus 428 ~~~L~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~ 476 (552)
....+++++-|++|||+++++...++.+= ..++.-++||.+.
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMSQ 67 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 34557788999999999999998888642 2567778888763
No 51
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.47 E-value=32 Score=26.41 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=25.0
Q ss_pred CchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH
Q 039791 395 TPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL 439 (552)
Q Consensus 395 ~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~ 439 (552)
..+.+.++++-|++|||.+.....+||. .....++.-+++|.
T Consensus 25 pe~~ye~qi~qL~eMGF~dr~~~~~AL~---~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 25 TEGRYQQELEELKALGFANRDANLQALV---ATDGDIHAAIEMLL 66 (74)
T ss_dssp TTTTSHHHHHHHHHHTCCCHHHHHHHHH---HTTSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCcHHHHHHHHH---HhCCCHHHHHHHHH
Confidence 3456778888888888854332223333 34455556666665
No 52
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=30.62 E-value=37 Score=28.09 Aligned_cols=43 Identities=23% Similarity=0.493 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHHcC
Q 039791 397 RHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNG 442 (552)
Q Consensus 397 ~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~~G 442 (552)
....++++-|+++||.+.....+||. .+.-.++.-+++|.+.|
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~ni~AL~---~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDELSLRALQ---ATGGDIQAALELIFAGG 106 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHHHHHHHH---HHTSCHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcCCCCHHHHHHHHH---HhCCCHHHHHHHHHhcC
Confidence 45688999999999966443224443 34456667777776543
No 53
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.44 E-value=34 Score=25.26 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCccCCc
Q 039791 400 MNKLTFLHGIGYGENT 415 (552)
Q Consensus 400 ~~k~~fl~~lG~~~~~ 415 (552)
.++++.|.++||+++.
T Consensus 10 ~~~I~~L~~MGF~~~~ 25 (63)
T 1wji_A 10 EKALKHITEMGFSKEA 25 (63)
T ss_dssp HHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHcCCCHHH
Confidence 5778889999997753
No 54
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=29.76 E-value=41 Score=25.55 Aligned_cols=49 Identities=10% Similarity=0.212 Sum_probs=33.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHhCCcccccccccc------hHHHHHhCCc-hHHHHHHHHc
Q 039791 308 VKGLLNHLGLSAKELKSVSEMYPYVLGRNKMAN------LPYVIRAVDL-QDWFFNKITN 360 (552)
Q Consensus 308 ~v~fL~~lG~s~~~i~~~l~~~P~iL~~~~lk~------~~~~L~~lGv-~~~l~~iI~~ 360 (552)
-++|+.+.|++...- .+|-..|..+.+.. ..+.|++||+ .-++.++++.
T Consensus 5 Wf~FFl~aGv~~~~c----~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk~ 60 (72)
T 3idw_A 5 WFEFFLNCGVDVSNC----QRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKH 60 (72)
T ss_dssp HHHHHHHTTCCHHHH----HHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHH----HHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHHH
Confidence 468888999987664 34555555554332 5689999999 6666666554
No 55
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.18 E-value=29 Score=25.51 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH
Q 039791 398 HTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL 439 (552)
Q Consensus 398 ~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~ 439 (552)
--.++++.|.++||+++... +|+.. +...++.-++||.
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~-~AL~~---t~~nve~A~e~L~ 45 (63)
T 2dak_A 8 PPEDCVTTIVSMGFSRDQAL-KALRA---TNNSLERAVDWIF 45 (63)
T ss_dssp CCHHHHHHHHHHTCCHHHHH-HHHHH---TTSCSHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHH-HHHHH---cCCCHHHHHHHHH
Confidence 34678899999999875322 44443 3335888888887
No 56
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=28.64 E-value=1.6e+02 Score=24.49 Aligned_cols=36 Identities=6% Similarity=0.236 Sum_probs=22.0
Q ss_pred HHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHh
Q 039791 235 RKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCR 278 (552)
Q Consensus 235 ~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~ 278 (552)
..++-|.++||+..+..+.+... .+++...++||.+
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRAT--------NNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 45666667777777766666543 2345666666653
No 57
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=27.92 E-value=43 Score=27.96 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHHHhhcCcchhHHHHHhcCCCccccccc---CCCcc
Q 039791 76 YSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCF---LPANK 119 (552)
Q Consensus 76 ~~~~~~~~~~~r~l~~~pi~~~e~f~eslGl~~~~~~~~---~P~~l 119 (552)
|++-++++.+..+....|+.....|-..+|++..++..+ .|++.
T Consensus 2 ~~dvdl~~~i~~Iae~m~~~~wK~laR~LGlse~~Id~I~~d~~~d~ 48 (115)
T 3ezq_A 2 LSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDT 48 (115)
T ss_dssp CHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCCHHHHHHHHHHCSSCH
T ss_pred cccccHHHHHHHHHHHcCHHHHHHHHHHcCCCHhhHHHHHHcCCCCh
Confidence 567788999999999999999999999999999999887 67643
No 58
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=27.72 E-value=41 Score=23.70 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHcCC-chHHHHHHHhhcCcccccChhhHHHHHHHHH
Q 039791 428 GSELQERFDCLLRNGV-AFSKLCMMIRLTPKILNQNPETIEQKLDFLC 474 (552)
Q Consensus 428 ~~~L~~r~~~L~~~G~-s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~ 474 (552)
+...+++++-|++||| +++.+...++.+= ..++.-++||.
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~-------gn~e~A~e~L~ 49 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIATG-------GDINAAIERLL 49 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHHT-------TCHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhC-------CCHHHHHHHHH
Confidence 4556788999999999 7776666655331 24555566654
No 59
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.46 E-value=46 Score=25.30 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCccCCc
Q 039791 398 HTMNKLTFLHGIGYGENT 415 (552)
Q Consensus 398 ~~~~k~~fl~~lG~~~~~ 415 (552)
--.++++.|.++||+++.
T Consensus 28 ~~~~~v~~L~~MGF~~~~ 45 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDV 45 (73)
T ss_dssp SCHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHcCCCHHH
Confidence 346789999999997753
No 60
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.18 E-value=91 Score=23.68 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=17.7
Q ss_pred HHHHHHHcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhh
Q 039791 434 RFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDL 477 (552)
Q Consensus 434 r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~m 477 (552)
.++-|++|||+.+.+.+.++.+-. ..++.-++||.+.+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 12 VIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCC
Confidence 344445555555555544443311 12444555555543
No 61
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=27.04 E-value=2.4e+02 Score=23.51 Aligned_cols=44 Identities=9% Similarity=0.133 Sum_probs=30.5
Q ss_pred ccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHH-hcC
Q 039791 227 VEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFC-RFG 280 (552)
Q Consensus 227 ~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~-~lG 280 (552)
..+|..+ -+.+|++..+|..+-..+|. +..+.....+..+. .-|
T Consensus 17 G~~Wk~L------AR~LGlse~dId~Ie~~~p~----dl~eq~~~mL~~W~~r~G 61 (122)
T 3ezq_B 17 GKDWRRL------ARQLKVSDTKIDSIEDRYPR----NLTERVRESLRIWKNTEK 61 (122)
T ss_dssp CTTHHHH------HHHTTCCHHHHHHHHHHCSS----CHHHHHHHHHHHHHHHCT
T ss_pred hhhHHHH------HHHhCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHhhC
Confidence 3556653 35789999999999999986 34456666665555 344
No 62
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.38 E-value=27 Score=25.69 Aligned_cols=20 Identities=5% Similarity=0.237 Sum_probs=10.8
Q ss_pred HHHHHHcCCchHHHHHHHhh
Q 039791 435 FDCLLRNGVAFSKLCMMIRL 454 (552)
Q Consensus 435 ~~~L~~~G~s~~~v~~mi~~ 454 (552)
++-+..|||+.+++...++.
T Consensus 23 V~~LvsMGFs~~qA~kALKa 42 (63)
T 1wgn_A 23 VETVVNMGYSYECVLRAMKK 42 (63)
T ss_dssp HHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 45555555555555555544
No 63
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=26.00 E-value=1.1e+02 Score=25.78 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHhcCCC-cccccccCCCcc-eeeccccchHHHHHHHHhCCCChhhHHHHHhh
Q 039791 99 FFFESIGID-HAEVSCFLPANK-FFLSEDSCLLNAACALSSFGFPWDKLGKLYKE 151 (552)
Q Consensus 99 ~f~eslGl~-~~~~~~~~P~~l-~~ls~d~~l~~~~~~L~~~G~~~~~i~~~~~~ 151 (552)
.|+|..|+= |..-. +..- .+-.+|-.....+..|++.|++-++|..++..
T Consensus 18 R~ye~~Gll~p~~r~---~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 18 RFYEEKGLVTPPMRS---ENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp HHHHHTTCSCCCEEC---TTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHCCCCCCCccC---CCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 367888863 32211 1111 12223445567778899999999999998853
No 64
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.74 E-value=74 Score=21.00 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhhcCCChhHHhhH
Q 039791 161 QDLTAKLSRLKNYYGFSNVILVGI 184 (552)
Q Consensus 161 ~~l~~~l~~L~~l~G~s~~~i~~l 184 (552)
..+++-++.|++- ||+++++..+
T Consensus 3 aalkselqalkke-gfspeelaal 25 (48)
T 1g6u_A 3 AALKSELQALKKE-GFSPEELAAL 25 (48)
T ss_dssp HHHHHHHHHHHHT-TCSHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHH
Confidence 3467788888888 9988887654
No 65
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.54 E-value=83 Score=23.16 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=9.6
Q ss_pred HHHHHHcCCchHHHHHHHhh
Q 039791 435 FDCLLRNGVAFSKLCMMIRL 454 (552)
Q Consensus 435 ~~~L~~~G~s~~~v~~mi~~ 454 (552)
++-|.+|||+.+.+.+.++.
T Consensus 23 i~~L~~MGF~~~~a~~AL~~ 42 (64)
T 2cpw_A 23 LDVLLSMGFPRARAQKALAS 42 (64)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 34444555555554444443
No 66
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.71 E-value=2.6e+02 Score=24.23 Aligned_cols=60 Identities=8% Similarity=-0.054 Sum_probs=40.0
Q ss_pred ccchHHHHHHHHhCC-CChhhHHHHHhhhccccccChhhHHHHHHHHHhhcCCChhHHhhHhhcC
Q 039791 125 DSCLLNAACALSSFG-FPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGF 188 (552)
Q Consensus 125 d~~l~~~~~~L~~~G-~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L~~l~G~s~~~i~~lv~~~ 188 (552)
++.+...++.|.+.| ++.......+.+.-.--++++..|.. -|... |++.+.|...+...
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G~~~I~~---eL~~K-GI~~~~i~~al~~~ 106 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQ---ELNQK-GISREATEKAMREA 106 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTCCHHHHHH---HHHHT-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCccHHHHHH---HHHHc-CCCHHHHHHHHHHc
Confidence 356778899999998 45556666665443223445444443 66788 99999888777654
No 67
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.51 E-value=1.2e+02 Score=23.70 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=18.7
Q ss_pred HHHHHHHcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhh
Q 039791 434 RFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDL 477 (552)
Q Consensus 434 r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~m 477 (552)
.++-|++|||+.+.+.+.++.+ + ..++.-++||.+.+
T Consensus 32 ~i~~L~~MGF~~~~a~~AL~~t----~---~nve~A~ewL~~~~ 68 (83)
T 2dai_A 32 ALRQLTEMGFPENRATKALQLN----H---MSVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHT----T---SCHHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHh----C---CCHHHHHHHHHHCC
Confidence 3444555666665555555443 1 13445556665543
No 68
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.49 E-value=54 Score=25.64 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHH
Q 039791 398 HTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLR 440 (552)
Q Consensus 398 ~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~ 440 (552)
--.++++-|.++||+++. +..++..+...++.-++||.+
T Consensus 28 ~~e~~i~~L~~MGF~~~~----a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENR----ATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp CCHHHHHHHHHHTCCHHH----HHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHH----HHHHHHHhCCCHHHHHHHHHH
Confidence 346788999999999853 334443345578888999985
No 69
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=22.36 E-value=13 Score=29.85 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=16.8
Q ss_pred HHHHhhcCcchhHHHHHhcCCCc
Q 039791 86 QRFLRYHPINEFEFFFESIGIDH 108 (552)
Q Consensus 86 ~r~l~~~pi~~~e~f~eslGl~~ 108 (552)
+.|+.-.-+..||.|+|++||+.
T Consensus 73 RpFIp~~Di~~FesFle~igire 95 (98)
T 4fqn_A 73 RPFIPEKDSQHFENFLETIGVKD 95 (98)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCC
T ss_pred cCCCChhhHHHHHHHHHHcCccc
Confidence 33444455778999999999964
No 70
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=22.21 E-value=4.5e+02 Score=24.01 Aligned_cols=59 Identities=8% Similarity=-0.025 Sum_probs=39.1
Q ss_pred cchHHHHHHHHhCC-CChhhHHHHHhhhccc-cccChhhHHHHHHHHHhhcCCChhHHhhHhhcC
Q 039791 126 SCLLNAACALSSFG-FPWDKLGKLYKEEVSI-FSQSSQDLTAKLSRLKNYYGFSNVILVGICLGF 188 (552)
Q Consensus 126 ~~l~~~~~~L~~~G-~~~~~i~~~~~~~P~l-l~~~~~~l~~~l~~L~~l~G~s~~~i~~lv~~~ 188 (552)
+.+...++.|.+.| ++.......+.+.-.- -++++..|.. -|... |++.+.|...+...
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~---eL~~K-GI~~~~I~~al~~~ 153 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQ---HLRQK-GIGESDIDDALTQF 153 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHH---HHHHT-TCCHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHH---HHHHc-CCCHHHHHHHHHhC
Confidence 45568889999998 4555666666444322 2455544444 56688 99999888777754
No 71
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.36 E-value=1.7e+02 Score=24.08 Aligned_cols=41 Identities=5% Similarity=0.087 Sum_probs=28.4
Q ss_pred ccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHH
Q 039791 227 VEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFC 277 (552)
Q Consensus 227 ~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~ 277 (552)
..+|..+. +.+|+++.+|..+-..+|. +..+.....+..+.
T Consensus 35 G~~Wk~LA------R~LGlse~dId~I~~~~p~----~l~eq~~qmL~~W~ 75 (114)
T 2of5_A 35 GPEWEPMV------LSLGLSQTDIYRCKANHPH----NVQSQVVEAFIRWR 75 (114)
T ss_dssp CSTHHHHH------HTTTCCHHHHHHHHHHCSS----CHHHHHHHHHHHHH
T ss_pred hhhHHHHH------HHcCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHH
Confidence 35566643 5689999999999999984 44455555555444
No 72
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=21.18 E-value=1.9e+02 Score=21.21 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHhhCCChHHHhh
Q 039791 463 PETIEQKLDFLCQDLGSSLDYLYA 486 (552)
Q Consensus 463 ~e~l~~k~~fL~~~mg~~~~~l~~ 486 (552)
.+.+..-.+.|...+|.+++++..
T Consensus 52 ~~~l~~~~~~l~~~~~v~~~~l~~ 75 (84)
T 2ef8_A 52 ALELFELLEVVASRLGLPMDILLK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHccccCCCHHHHHc
Confidence 344455556666667888888753
No 73
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.46 E-value=1.3e+02 Score=22.08 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=8.1
Q ss_pred HHHHHcCCchHHHHHHHh
Q 039791 436 DCLLRNGVAFSKLCMMIR 453 (552)
Q Consensus 436 ~~L~~~G~s~~~v~~mi~ 453 (552)
+-|++|||+.+.+.+.+.
T Consensus 14 ~~L~~MGF~~~~a~~AL~ 31 (64)
T 2crn_A 14 EPLLAMGFPVHTALKALA 31 (64)
T ss_dssp HHHHHTSCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 334445555544444433
Done!