Query 039791
Match_columns 552
No_of_seqs 287 out of 1197
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 23:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039791.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039791hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 72.3 1.3 9.7E-05 28.4 2.9 26 430-455 3-28 (41)
2 d1oqya1 a.5.2.1 (A:160-200) DN 59.5 1.9 0.00014 27.6 1.6 37 398-438 3-39 (41)
3 d2g3qa1 a.5.2.1 (A:1339-1381) 41.2 7 0.00051 24.9 2.0 22 434-455 7-28 (43)
4 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 38.9 11 0.00079 25.0 2.9 44 396-442 5-49 (50)
5 d1wiva_ a.5.2.1 (A:) Ubiquitin 37.5 21 0.0015 25.4 4.6 35 434-475 32-66 (73)
6 d1wjia_ a.5.2.1 (A:) Tudor dom 35.8 14 0.001 25.6 3.3 35 435-476 13-47 (63)
7 d1vg5a_ a.5.2.1 (A:) Rhomboid 35.8 11 0.00077 27.1 2.6 36 400-439 30-65 (73)
8 d1q06a_ a.6.1.3 (A:) Transcrip 33.2 35 0.0025 26.6 5.9 51 99-150 18-68 (127)
9 d1wiva_ a.5.2.1 (A:) Ubiquitin 32.7 14 0.001 26.4 2.9 39 398-440 28-66 (73)
10 d1wgna_ a.5.2.1 (A:) Ubiquitin 31.7 11 0.00079 26.2 2.1 21 434-454 22-42 (63)
11 d1a9xa1 a.92.1.1 (A:403-555) C 31.6 37 0.0027 27.7 5.9 70 161-255 32-105 (153)
12 d1r8ea1 a.6.1.3 (A:3-120) Tran 30.5 43 0.0031 25.6 5.9 50 99-149 21-71 (118)
13 d1wgna_ a.5.2.1 (A:) Ubiquitin 30.2 13 0.00097 25.7 2.3 16 400-415 20-35 (63)
14 d1rw1a_ c.47.1.12 (A:) Hypothe 28.6 29 0.0021 26.6 4.5 23 279-301 71-93 (114)
15 d1cuka1 a.5.1.1 (A:156-203) DN 27.3 66 0.0048 20.7 5.3 35 429-464 3-37 (48)
16 d2daha1 a.5.2.1 (A:8-48) Ubiqu 26.6 28 0.002 21.9 3.2 38 399-439 2-39 (41)
17 d1vg5a_ a.5.2.1 (A:) Rhomboid 26.2 35 0.0026 24.1 4.2 36 235-278 31-66 (73)
18 d1fada_ a.77.1.2 (A:) FADD (Mo 26.0 76 0.0055 23.0 6.5 33 241-277 29-61 (95)
19 d1wjia_ a.5.2.1 (A:) Tudor dom 23.4 59 0.0043 22.1 4.8 35 236-278 12-46 (63)
20 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 22.1 25 0.0018 23.2 2.4 12 403-414 16-27 (51)
21 d2gf5a1 a.77.1.2 (A:89-191) FA 21.8 1.3E+02 0.0093 22.0 7.2 41 227-277 21-61 (103)
22 d1r8da_ a.6.1.3 (A:) Multidrug 21.5 43 0.0031 25.2 4.2 49 99-150 20-70 (109)
23 d1k6ya1 a.4.10.1 (A:1-46) N-te 21.3 18 0.0013 23.5 1.4 24 40-63 19-42 (46)
24 d1f5ta2 a.76.1.1 (A:1065-1121) 21.0 1.1E+02 0.0078 20.1 5.9 36 35-70 14-54 (57)
25 d1veja1 a.5.2.1 (A:8-68) 49314 20.6 41 0.003 23.0 3.3 42 395-439 18-59 (61)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.31 E-value=1.3 Score=28.40 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHhhc
Q 039791 430 ELQERFDCLLRNGVAFSKLCMMIRLT 455 (552)
Q Consensus 430 ~L~~r~~~L~~~G~s~~~v~~mi~~~ 455 (552)
+.++.++-|++|||+++++.+.++.+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45556666666677766666665554
No 2
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.52 E-value=1.9 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHH
Q 039791 398 HTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCL 438 (552)
Q Consensus 398 ~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L 438 (552)
..+++++-|.++||+++.. ..+|..+..++..-++||
T Consensus 3 ~~e~~i~~L~~MGF~~~~a----~~AL~~~~~N~e~A~~~L 39 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERV----VAALRASYNNPHRAVEYL 39 (41)
T ss_dssp THHHHHHHHHTTTCCSHHH----HHHHHHSCSSTTHHHHTT
T ss_pred hHHHHHHHHHHcCCCHHHH----HHHHHHhCCCHHHHHHHH
Confidence 4678899999999999853 334433333444444443
No 3
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=41.15 E-value=7 Score=24.85 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=17.2
Q ss_pred HHHHHHHcCCchHHHHHHHhhc
Q 039791 434 RFDCLLRNGVAFSKLCMMIRLT 455 (552)
Q Consensus 434 r~~~L~~~G~s~~~v~~mi~~~ 455 (552)
-++-|++|||+.++..+.+.++
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~ 28 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHc
Confidence 3566778899988888888776
No 4
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.88 E-value=11 Score=24.99 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=29.6
Q ss_pred chhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH-HcC
Q 039791 396 PRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL-RNG 442 (552)
Q Consensus 396 ~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~-~~G 442 (552)
++.+..-++-|+++||...+..++|+.. +.-.++.-++.|. .-|
T Consensus 5 e~ry~~QL~qL~~MGF~d~~~Ni~AL~~---t~GdV~~Aie~Ll~~~g 49 (50)
T d2dnaa1 5 EVRFSKEMECLQAMGFVNYNANLQALIA---TDGDTNAAIYKLKSSQG 49 (50)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHH---TTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH---cCCCHHHHHHHHHhcCC
Confidence 3466777888999999887654455544 4556666777776 444
No 5
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=37.46 E-value=21 Score=25.45 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=18.0
Q ss_pred HHHHHHHcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHH
Q 039791 434 RFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQ 475 (552)
Q Consensus 434 r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~ 475 (552)
.+.-|++|||+++++.+.++.+- .+++.-++||.+
T Consensus 32 ~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~Av~~Lls 66 (73)
T d1wiva_ 32 SVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHcC-------CCHHHHHHHHHc
Confidence 44455556666655555555541 134455555554
No 6
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.80 E-value=14 Score=25.56 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=16.7
Q ss_pred HHHHHHcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHh
Q 039791 435 FDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQD 476 (552)
Q Consensus 435 ~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~ 476 (552)
+.-|++|||+++.+.+.++.+- ..++.-++||.+.
T Consensus 13 v~~L~~MGF~~~~a~~AL~~~~-------~~~e~A~~wL~~~ 47 (63)
T d1wjia_ 13 LKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 4444455555555544444431 1344555555554
No 7
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=35.79 E-value=11 Score=27.14 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH
Q 039791 400 MNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL 439 (552)
Q Consensus 400 ~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~ 439 (552)
++.++-|.++||+++... +|+.. ...+++.-++||.
T Consensus 30 ee~i~~L~~MGF~~~~a~-~AL~~---~~~n~e~A~~~Ll 65 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVE-VALAA---ADDDLTVAVEILM 65 (73)
T ss_dssp HHHHHHHHTTTCCHHHHH-HHHHH---HTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHH-HHHHH---hCCCHHHHHHHHH
Confidence 566777777777655321 33332 3335666666665
No 8
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=33.17 E-value=35 Score=26.57 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=30.6
Q ss_pred HHHHhcCCCcccccccCCCcceeeccccchHHHHHHHHhCCCChhhHHHHHh
Q 039791 99 FFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYK 150 (552)
Q Consensus 99 ~f~eslGl~~~~~~~~~P~~l~~ls~d~~l~~~~~~L~~~G~~~~~i~~~~~ 150 (552)
-|+|++|+=+..-..---. =.|-..|-.-...+..|++.|++-++|..++.
T Consensus 18 R~Ye~~GLl~p~~r~~~gy-R~Y~~~~i~~l~~I~~lr~~G~sl~eI~~~l~ 68 (127)
T d1q06a_ 18 RFYEEKGLVTPPMRSENGY-RTYTQQHLNELTLLRQARQVGFNLEESGELVN 68 (127)
T ss_dssp HHHHHTTCSCCCEECTTSC-EECCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCCCCccCCcCc-ccchHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4789999743321110000 01222344555677789999999999988763
No 9
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.68 E-value=14 Score=26.38 Aligned_cols=39 Identities=13% Similarity=0.324 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHH
Q 039791 398 HTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLR 440 (552)
Q Consensus 398 ~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~ 440 (552)
.-.+.+.-|.++||+++. +..+|..+..+++.-++||.+
T Consensus 28 ~d~~~i~~L~~MGF~~~~----a~~AL~~~~~n~e~Av~~Lls 66 (73)
T d1wiva_ 28 IDQSSVDTLLSFGFAEDV----ARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp SCHHHHHHHHHHTCCHHH----HHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHH----HHHHHHHcCCCHHHHHHHHHc
Confidence 346788999999998863 444554455678888888874
No 10
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.69 E-value=11 Score=26.23 Aligned_cols=21 Identities=5% Similarity=0.191 Sum_probs=9.8
Q ss_pred HHHHHHHcCCchHHHHHHHhh
Q 039791 434 RFDCLLRNGVAFSKLCMMIRL 454 (552)
Q Consensus 434 r~~~L~~~G~s~~~v~~mi~~ 454 (552)
.++-|++|||+++++.+.++.
T Consensus 22 ~v~~L~~MGF~~~~a~~AL~~ 42 (63)
T d1wgna_ 22 CVETVVNMGYSYECVLRAMKK 42 (63)
T ss_dssp HHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 344444455555444444443
No 11
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=31.62 E-value=37 Score=27.73 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHH---HHhhhhhcccccccccCCccchhhHh-HH
Q 039791 161 QDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFD---DLKTVFVDFGLMSSVEGNVEVWYDIC-RK 236 (552)
Q Consensus 161 ~~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~---~L~~l~~~~~~~~l~~~~~~s~~~~~-~~ 236 (552)
+.+-...++|+. |++-++|..+-.-.||.|.. +..+++ .++..+ +..+. ..
T Consensus 32 ~Ri~~i~eAlr~--G~sveeI~elTkID~WFL~q--------i~~Iv~~E~~l~~~~---------------~~~l~~~~ 86 (153)
T d1a9xa1 32 DRIWYIADAFRA--GLSVDGVFNLTNIDRWFLVQ--------IEELVRLEEKVAEVG---------------ITGLNADF 86 (153)
T ss_dssp THHHHHHHHHHT--TBCHHHHHHHHCCCHHHHHH--------HHHHHHHHHHHHHHT---------------GGGCCHHH
T ss_pred hHHHHHHHHHHc--CCCHHHHHHhhCeeeHHHHH--------HHHHHHHHhhhhhcC---------------cccCCHHH
Confidence 345555555554 99999999999999999987 444443 232211 11111 34
Q ss_pred HHHHhhCCCChhHHHHHHh
Q 039791 237 IRVFYDFRFEKGKLGELMG 255 (552)
Q Consensus 237 l~fl~~lG~~~~~i~~li~ 255 (552)
+.-.+.+|||+.+|+.+..
T Consensus 87 l~~aK~~GFSD~~ia~l~~ 105 (153)
T d1a9xa1 87 LRQLKRKGFADARLAKLAG 105 (153)
T ss_dssp HHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHc
Confidence 5667889999999998854
No 12
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=30.51 E-value=43 Score=25.58 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHhcCC-CcccccccCCCcceeeccccchHHHHHHHHhCCCChhhHHHHH
Q 039791 99 FFFESIGI-DHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLY 149 (552)
Q Consensus 99 ~f~eslGl-~~~~~~~~~P~~l~~ls~d~~l~~~~~~L~~~G~~~~~i~~~~ 149 (552)
.|+|+.|+ .|+....-.-. =.+-..|-.....+..|+++|+|-++|..++
T Consensus 21 R~Ye~~GLl~P~~~r~~~gy-R~Y~~~~l~~l~~I~~lr~~g~sl~eIk~~l 71 (118)
T d1r8ea1 21 RYYDKIDLFKPAYVDPDTSY-RYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQ 71 (118)
T ss_dssp HHHHHTTSSCCSEECTTTCC-EEEETGGGGHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHcCCcccccccCCCCc-ccccHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 47899996 46544322111 1233345567788889999999999998865
No 13
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.20 E-value=13 Score=25.75 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCccCCc
Q 039791 400 MNKLTFLHGIGYGENT 415 (552)
Q Consensus 400 ~~k~~fl~~lG~~~~~ 415 (552)
++.|+-|.++||+++.
T Consensus 20 e~~v~~L~~MGF~~~~ 35 (63)
T d1wgna_ 20 RQCVETVVNMGYSYEC 35 (63)
T ss_dssp HHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHcCCCHHH
Confidence 6789999999998764
No 14
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.60 E-value=29 Score=26.55 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=14.2
Q ss_pred cCCChhHHHHHHhhCCceecccc
Q 039791 279 FGVGNEDVGLLLLKSPEILSFDL 301 (552)
Q Consensus 279 lG~~~~~i~~il~~~P~iL~~s~ 301 (552)
-.++.+++..++..+|.++-..+
T Consensus 71 ~~ls~~e~i~~i~~~P~LikRPI 93 (114)
T d1rw1a_ 71 ADLDEAKAIELMLAQPSMIKRPV 93 (114)
T ss_dssp TTCCHHHHHHHHHHCGGGBCSCE
T ss_pred ccccHHHHHHHHHhCcceEeCCE
Confidence 34566666666666666665544
No 15
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.30 E-value=66 Score=20.68 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHhhcCcccccChh
Q 039791 429 SELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPE 464 (552)
Q Consensus 429 ~~L~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e 464 (552)
+...+-++-|..+|++..++.+++.+-+. =+.+.|
T Consensus 3 ~~~~eAi~AL~~LGY~~~ea~~av~~i~~-~~~s~E 37 (48)
T d1cuka1 3 DAEQEAVARLVALGYKPQEASRMVSKIAR-PDASSE 37 (48)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHSCC-SSCCHH
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHhcC-CCCCHH
Confidence 44567778888999999999999987643 133444
No 16
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.65 E-value=28 Score=21.85 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH
Q 039791 399 TMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL 439 (552)
Q Consensus 399 ~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~ 439 (552)
+...++.|+++||...+.-.+|+....| .++.-++.|.
T Consensus 2 y~~QL~~L~~MGF~d~~~Ni~AL~~t~G---dv~~Aie~Ll 39 (41)
T d2daha1 2 FQVQLEQLRSMGFLNREANLQALIATGG---DVDAAVEKLR 39 (41)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTS---CHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHcCC---CHHHHHHHHH
Confidence 3567788999999887755556555443 4444455443
No 17
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=26.17 E-value=35 Score=24.13 Aligned_cols=36 Identities=14% Similarity=0.296 Sum_probs=26.4
Q ss_pred HHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHh
Q 039791 235 RKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCR 278 (552)
Q Consensus 235 ~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~ 278 (552)
..|+-|.++||+.++..+.+..+ .+++...++||.+
T Consensus 31 e~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll~ 66 (73)
T d1vg5a_ 31 EQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 46777888888888887777664 3567788888764
No 18
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.98 E-value=76 Score=22.96 Aligned_cols=33 Identities=6% Similarity=0.157 Sum_probs=24.2
Q ss_pred hhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHH
Q 039791 241 YDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFC 277 (552)
Q Consensus 241 ~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~ 277 (552)
+.+|++..+|..+-..+|. +..+.....+.-++
T Consensus 29 r~Lgls~~~I~~I~~~~~~----~~~e~~~~mL~~W~ 61 (95)
T d1fada_ 29 RELKVSEAKMDGIEEKYPR----SLSERVRESLKVWK 61 (95)
T ss_dssp HHTTCCHHHHHHHHHHCSS----CHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHH
Confidence 5689999999999998874 44455566665554
No 19
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.39 E-value=59 Score=22.08 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=24.6
Q ss_pred HHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHh
Q 039791 236 KIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCR 278 (552)
Q Consensus 236 ~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~ 278 (552)
.|+-|.++||+..+..+.+..+ .+++...++||.+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~ 46 (63)
T d1wjia_ 12 ALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 4666778888888877777665 2357777777764
No 20
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.06 E-value=25 Score=23.17 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=6.9
Q ss_pred HHHHHhcCccCC
Q 039791 403 LTFLHGIGYGEN 414 (552)
Q Consensus 403 ~~fl~~lG~~~~ 414 (552)
++-|.++||+++
T Consensus 16 l~~L~~MGF~~~ 27 (51)
T d2cpwa1 16 LDVLLSMGFPRA 27 (51)
T ss_dssp HHHHHHHTCCHH
T ss_pred HHHHHHcCCCHH
Confidence 445556666655
No 21
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.81 E-value=1.3e+02 Score=21.95 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=28.7
Q ss_pred ccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHH
Q 039791 227 VEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFC 277 (552)
Q Consensus 227 ~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~ 277 (552)
..+|.++. +.+|++..+|..+-..||. +..+.....+..++
T Consensus 21 g~~W~~La------~~Lgl~~~~I~~I~~~~~~----~~~e~~~~mL~~W~ 61 (103)
T d2gf5a1 21 GKDWRRLA------RQLKVSDTKIDSIEDRYPR----NLTERVRESLRIWK 61 (103)
T ss_dssp CTTHHHHH------HHTTCCHHHHHHHHHHSSS----CSHHHHHHHHHHHH
T ss_pred HHhHHHHH------HHcCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHH
Confidence 34566643 4689999999999888874 33455666666665
No 22
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=21.52 E-value=43 Score=25.18 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=30.3
Q ss_pred HHHHhcCCC-cccccccCCCcc-eeeccccchHHHHHHHHhCCCChhhHHHHHh
Q 039791 99 FFFESIGID-HAEVSCFLPANK-FFLSEDSCLLNAACALSSFGFPWDKLGKLYK 150 (552)
Q Consensus 99 ~f~eslGl~-~~~~~~~~P~~l-~~ls~d~~l~~~~~~L~~~G~~~~~i~~~~~ 150 (552)
.|+|+.|+= |..-..= +- .+-.+|-.....+..|++.|||-++|..++.
T Consensus 20 R~Ye~~GLl~p~~r~~~---gyR~Y~~~~~~~l~~I~~lr~~G~sl~eI~~~l~ 70 (109)
T d1r8da_ 20 HHYDNIELLNPSALTDA---GYRLYSDADLERLQQILFFKEIGFRLDEIKEMLD 70 (109)
T ss_dssp HHHHHTTSSCCSEECTT---CCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCcCCcccCCc---ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 468888863 3333211 11 1222344555777888999999999988763
No 23
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=21.31 E-value=18 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=21.2
Q ss_pred HHHHHhcCCCChhhHHHHhhcChH
Q 039791 40 TEYLHYTKSIPFTYAEHISKHSLN 63 (552)
Q Consensus 40 ~~yL~~~~gl~~~~A~~is~~sp~ 63 (552)
..+|..++|||-..|..|.+.+|.
T Consensus 19 ~~~L~~~F~ip~~vAr~IV~~C~~ 42 (46)
T d1k6ya1 19 WRAMASDFNLPPVVAKEIVASCDK 42 (46)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 357889999999999999999884
No 24
>d1f5ta2 a.76.1.1 (A:1065-1121) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=21.04 E-value=1.1e+02 Score=20.08 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHhhc-----ChHHHHHHHH
Q 039791 35 AQQAVTEYLHYTKSIPFTYAEHISKH-----SLNTLSKLIA 70 (552)
Q Consensus 35 a~~~~~~yL~~~~gl~~~~A~~is~~-----sp~~~~~ll~ 70 (552)
.-+.+-.||..-.|++.+.|...|-+ ||.++..|..
T Consensus 14 rHrlle~fL~~~lgv~~~~a~~~A~~iEH~ls~~~~~~l~~ 54 (57)
T d1f5ta2 14 KHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVK 54 (57)
T ss_dssp HHHHHHHHHHTTSCCCGGGHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 34455689987789999999998877 8888877754
No 25
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.58 E-value=41 Score=22.98 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=27.4
Q ss_pred CchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH
Q 039791 395 TPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL 439 (552)
Q Consensus 395 ~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~ 439 (552)
.++++..-++-|+++||...+.-++|+.. +...++.-+++|.
T Consensus 18 ~e~ry~~QL~qL~eMGF~d~~~Nl~AL~~---t~Gdv~~Aie~Ll 59 (61)
T d1veja1 18 TEGRYQQELEELKALGFANRDANLQALVA---TDGDIHAAIEMLL 59 (61)
T ss_dssp TTTTSHHHHHHHHHHTCCCHHHHHHHHHH---TTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHH---cCCCHHHHHHHHh
Confidence 56778888999999999877654444443 3444555555543
Done!