Query 039792
Match_columns 819
No_of_seqs 793 out of 4891
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 13:15:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6E-113 1E-117 1006.1 80.4 696 115-817 48-775 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.1E-94 9E-99 846.3 72.2 642 45-699 83-727 (857)
3 PLN03081 pentatricopeptide (PP 100.0 3E-83 6.6E-88 736.0 62.7 529 220-818 83-613 (697)
4 PLN03218 maturation of RBCL 1; 100.0 2.7E-69 5.8E-74 620.5 58.0 568 190-814 367-957 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 4.7E-70 1E-74 626.8 49.6 473 115-593 84-559 (697)
6 PLN03218 maturation of RBCL 1; 100.0 2.3E-69 5E-74 621.0 54.0 528 83-664 366-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.7E-34 1.5E-38 344.1 72.0 669 66-759 173-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-33 4.7E-38 339.7 72.1 679 66-764 139-868 (899)
9 PRK11447 cellulose synthase su 99.9 3.8E-22 8.2E-27 241.4 61.9 636 93-765 34-744 (1157)
10 PRK11447 cellulose synthase su 99.9 9.4E-22 2E-26 238.0 60.1 609 66-697 42-746 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.8E-19 3.9E-24 207.7 56.0 624 98-764 55-742 (987)
12 PRK09782 bacteriophage N4 rece 99.9 2.2E-18 4.8E-23 198.8 60.2 645 66-749 58-760 (987)
13 KOG4626 O-linked N-acetylgluco 99.8 6.2E-18 1.3E-22 172.1 34.1 445 228-754 52-511 (966)
14 PRK11788 tetratricopeptide rep 99.8 2E-17 4.4E-22 178.7 30.5 236 531-773 111-358 (389)
15 PRK11788 tetratricopeptide rep 99.8 1.7E-17 3.7E-22 179.3 28.9 295 371-697 46-352 (389)
16 KOG4626 O-linked N-acetylgluco 99.8 2.3E-16 5E-21 160.8 32.2 417 331-761 54-484 (966)
17 TIGR00990 3a0801s09 mitochondr 99.8 1.5E-15 3.3E-20 172.8 41.5 248 509-762 307-571 (615)
18 KOG4422 Uncharacterized conser 99.8 6.8E-15 1.5E-19 143.9 37.2 346 117-508 115-480 (625)
19 KOG2002 TPR-containing nuclear 99.8 3.8E-13 8.1E-18 145.4 53.2 673 70-765 26-801 (1018)
20 KOG2002 TPR-containing nuclear 99.8 2.2E-13 4.7E-18 147.2 49.4 540 209-761 146-744 (1018)
21 PRK15174 Vi polysaccharide exp 99.7 5.3E-15 1.1E-19 167.6 37.2 284 402-691 49-346 (656)
22 TIGR00990 3a0801s09 mitochondr 99.7 1.6E-14 3.5E-19 164.4 40.1 418 227-691 130-570 (615)
23 PRK10049 pgaA outer membrane p 99.7 3E-14 6.4E-19 165.2 42.8 390 331-762 21-456 (765)
24 PRK15174 Vi polysaccharide exp 99.7 2.4E-14 5.3E-19 162.2 38.7 328 328-663 45-385 (656)
25 PRK10049 pgaA outer membrane p 99.7 1.8E-13 3.9E-18 158.7 45.0 404 265-706 21-471 (765)
26 KOG4318 Bicoid mRNA stability 99.7 1.7E-13 3.6E-18 146.1 38.8 642 73-763 11-809 (1088)
27 KOG4422 Uncharacterized conser 99.7 4.9E-13 1.1E-17 131.1 37.8 429 223-709 115-569 (625)
28 KOG4318 Bicoid mRNA stability 99.7 1.2E-13 2.6E-18 147.2 35.9 261 115-409 22-285 (1088)
29 PRK14574 hmsH outer membrane p 99.7 1.4E-12 3E-17 148.0 42.7 429 305-760 45-511 (822)
30 PRK14574 hmsH outer membrane p 99.7 2.8E-12 6E-17 145.6 43.5 437 200-664 41-518 (822)
31 KOG0495 HAT repeat protein [RN 99.6 7.1E-10 1.5E-14 115.0 51.7 489 269-779 386-895 (913)
32 KOG2076 RNA polymerase III tra 99.6 8.8E-11 1.9E-15 126.6 45.6 617 98-758 150-891 (895)
33 KOG2003 TPR repeat-containing 99.5 2.6E-11 5.6E-16 119.8 31.4 467 231-711 208-707 (840)
34 KOG0547 Translocase of outer m 99.5 3.2E-11 7E-16 120.8 29.7 218 537-760 336-564 (606)
35 KOG2076 RNA polymerase III tra 99.5 6.1E-09 1.3E-13 112.8 47.7 567 190-763 170-850 (895)
36 KOG2003 TPR repeat-containing 99.5 4.1E-11 8.8E-16 118.4 26.9 470 195-687 203-717 (840)
37 KOG0495 HAT repeat protein [RN 99.4 6.6E-08 1.4E-12 100.8 46.0 416 340-774 361-792 (913)
38 PF13429 TPR_15: Tetratricopep 99.4 9.2E-13 2E-17 134.5 10.7 250 501-760 13-275 (280)
39 PF13429 TPR_15: Tetratricopep 99.4 2.2E-12 4.8E-17 131.7 11.3 253 434-691 16-276 (280)
40 KOG1126 DNA-binding cell divis 99.4 7.4E-11 1.6E-15 123.4 21.6 254 498-763 355-621 (638)
41 KOG1155 Anaphase-promoting com 99.4 2.3E-08 4.9E-13 100.2 37.7 254 434-691 235-494 (559)
42 COG2956 Predicted N-acetylgluc 99.4 6.3E-10 1.4E-14 106.1 25.4 311 438-788 47-373 (389)
43 KOG1155 Anaphase-promoting com 99.3 1.5E-09 3.2E-14 108.5 28.4 355 391-759 160-533 (559)
44 KOG2047 mRNA splicing factor [ 99.3 6.9E-08 1.5E-12 100.5 40.9 517 188-759 76-684 (835)
45 PRK10747 putative protoheme IX 99.3 9.1E-10 2E-14 117.8 28.3 123 561-689 262-387 (398)
46 PRK10747 putative protoheme IX 99.3 9.3E-10 2E-14 117.7 27.9 219 503-761 160-389 (398)
47 KOG1915 Cell cycle control pro 99.3 1.5E-07 3.3E-12 94.5 37.8 427 205-671 85-548 (677)
48 KOG1126 DNA-binding cell divis 99.3 5.4E-10 1.2E-14 117.0 21.6 272 410-690 334-618 (638)
49 TIGR00540 hemY_coli hemY prote 99.3 1.9E-09 4.1E-14 116.1 26.8 130 627-760 262-397 (409)
50 TIGR00540 hemY_coli hemY prote 99.3 2.6E-09 5.6E-14 115.0 27.5 287 337-656 96-398 (409)
51 KOG1173 Anaphase-promoting com 99.2 2.5E-08 5.3E-13 102.6 31.0 265 492-760 240-516 (611)
52 KOG1915 Cell cycle control pro 99.2 3.6E-07 7.8E-12 91.9 38.3 428 307-744 86-551 (677)
53 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 5E-16 86.5 5.5 50 222-271 1-50 (50)
54 PF13041 PPR_2: PPR repeat fam 99.2 3.5E-11 7.7E-16 85.5 6.3 50 626-675 1-50 (50)
55 COG3071 HemY Uncharacterized e 99.2 3.5E-08 7.7E-13 97.5 27.7 290 338-661 97-394 (400)
56 KOG0547 Translocase of outer m 99.1 7.7E-08 1.7E-12 97.1 27.4 187 499-691 363-565 (606)
57 KOG4162 Predicted calmodulin-b 99.1 2E-06 4.4E-11 92.1 39.5 368 389-762 317-783 (799)
58 KOG2047 mRNA splicing factor [ 99.1 9.1E-06 2E-10 85.2 42.4 538 103-691 91-686 (835)
59 COG2956 Predicted N-acetylgluc 99.1 9.5E-08 2E-12 91.6 25.9 222 338-592 48-279 (389)
60 KOG0985 Vesicle coat protein c 99.1 5.8E-05 1.3E-09 83.1 52.5 552 179-759 499-1246(1666)
61 TIGR02521 type_IV_pilW type IV 99.1 3.3E-08 7.2E-13 98.1 23.3 193 529-761 33-231 (234)
62 PRK11189 lipoprotein NlpI; Pro 99.1 3.2E-08 6.9E-13 101.2 22.9 217 541-763 40-266 (296)
63 KOG1173 Anaphase-promoting com 99.1 3.7E-07 8.1E-12 94.2 30.0 268 429-704 247-528 (611)
64 COG3071 HemY Uncharacterized e 99.1 2.3E-07 4.9E-12 92.0 27.4 248 472-727 129-389 (400)
65 KOG0985 Vesicle coat protein c 99.1 7.3E-05 1.6E-09 82.4 51.2 200 526-745 1103-1325(1666)
66 KOG1129 TPR repeat-containing 99.1 2.1E-08 4.6E-13 95.7 19.4 227 531-762 227-458 (478)
67 TIGR02521 type_IV_pilW type IV 99.0 4.2E-08 9.1E-13 97.4 21.4 194 495-691 30-231 (234)
68 PRK12370 invasion protein regu 99.0 6.5E-08 1.4E-12 108.4 23.2 244 510-762 275-535 (553)
69 KOG2376 Signal recognition par 99.0 9E-06 2E-10 84.6 36.0 367 306-689 91-517 (652)
70 KOG1840 Kinesin light chain [C 99.0 3.1E-07 6.7E-12 97.8 25.9 239 397-691 201-478 (508)
71 KOG1174 Anaphase-promoting com 99.0 6.7E-06 1.4E-10 81.6 32.7 317 457-808 190-520 (564)
72 KOG3616 Selective LIM binding 99.0 2.3E-05 4.9E-10 83.2 38.4 556 98-763 455-1025(1636)
73 PRK12370 invasion protein regu 98.9 9E-08 1.9E-12 107.2 22.9 227 475-708 275-519 (553)
74 KOG3785 Uncharacterized conser 98.9 2.5E-06 5.5E-11 82.7 27.8 367 370-769 131-521 (557)
75 KOG3616 Selective LIM binding 98.9 6.8E-06 1.5E-10 86.9 32.7 129 308-453 545-675 (1636)
76 KOG2376 Signal recognition par 98.9 1.6E-05 3.5E-10 82.8 34.7 436 269-725 22-517 (652)
77 KOG1840 Kinesin light chain [C 98.9 4.5E-07 9.6E-12 96.7 24.1 199 532-760 246-477 (508)
78 KOG3785 Uncharacterized conser 98.9 5E-06 1.1E-10 80.7 27.4 418 202-668 66-499 (557)
79 KOG3617 WD40 and TPR repeat-co 98.8 4.2E-05 9E-10 82.4 35.4 239 192-453 725-994 (1416)
80 COG3063 PilF Tfp pilus assembl 98.8 4.9E-07 1.1E-11 82.9 17.9 160 600-764 38-204 (250)
81 PF12569 NARP1: NMDA receptor- 98.8 3.9E-05 8.6E-10 83.1 35.4 123 531-656 198-333 (517)
82 KOG1174 Anaphase-promoting com 98.8 1.7E-05 3.6E-10 78.9 29.0 266 391-662 228-503 (564)
83 KOG1127 TPR repeat-containing 98.7 0.0001 2.3E-09 81.4 36.1 327 413-745 801-1192(1238)
84 COG3063 PilF Tfp pilus assembl 98.7 3.6E-06 7.8E-11 77.4 21.0 198 532-735 40-243 (250)
85 KOG1129 TPR repeat-containing 98.7 1.2E-06 2.6E-11 84.0 17.6 225 399-662 227-461 (478)
86 KOG1156 N-terminal acetyltrans 98.7 0.00014 3E-09 76.9 34.0 374 271-691 19-433 (700)
87 KOG4162 Predicted calmodulin-b 98.7 0.00011 2.5E-09 79.2 33.9 396 288-691 317-782 (799)
88 KOG1156 N-terminal acetyltrans 98.6 0.00034 7.5E-09 74.1 35.0 433 234-691 51-510 (700)
89 PF12854 PPR_1: PPR repeat 98.6 5.8E-08 1.3E-12 61.7 3.3 33 188-220 2-34 (34)
90 PF12854 PPR_1: PPR repeat 98.5 8E-08 1.7E-12 61.0 3.5 33 82-114 2-34 (34)
91 PRK11189 lipoprotein NlpI; Pro 98.5 3.6E-05 7.9E-10 78.8 24.7 27 665-691 238-264 (296)
92 KOG1127 TPR repeat-containing 98.5 0.00012 2.6E-09 81.0 29.2 245 514-761 801-1103(1238)
93 PF12569 NARP1: NMDA receptor- 98.5 4.7E-05 1E-09 82.6 26.0 127 564-691 196-333 (517)
94 KOG0548 Molecular co-chaperone 98.5 0.00041 9E-09 72.0 29.4 396 334-762 11-455 (539)
95 KOG3617 WD40 and TPR repeat-co 98.4 0.0046 9.9E-08 67.4 37.6 182 205-421 812-993 (1416)
96 PF04733 Coatomer_E: Coatomer 98.4 4.4E-06 9.5E-11 84.1 14.1 151 603-761 108-264 (290)
97 KOG4340 Uncharacterized conser 98.4 0.00025 5.5E-09 67.6 24.0 293 354-688 4-335 (459)
98 KOG1914 mRNA cleavage and poly 98.4 0.0032 7E-08 65.5 33.5 166 543-710 347-522 (656)
99 cd05804 StaR_like StaR_like; a 98.4 0.00031 6.7E-09 74.8 28.3 254 435-691 52-335 (355)
100 PRK04841 transcriptional regul 98.4 0.011 2.3E-07 71.9 44.8 360 402-763 348-761 (903)
101 PF04733 Coatomer_E: Coatomer 98.4 2.3E-05 5.1E-10 78.9 18.0 152 504-663 110-269 (290)
102 PRK10370 formate-dependent nit 98.4 1.8E-05 3.9E-10 75.2 16.3 148 604-763 23-174 (198)
103 cd05804 StaR_like StaR_like; a 98.4 0.0005 1.1E-08 73.2 29.1 307 427-763 7-337 (355)
104 KOG4340 Uncharacterized conser 98.3 0.00017 3.7E-09 68.8 21.5 323 254-624 5-337 (459)
105 TIGR03302 OM_YfiO outer membra 98.3 3.5E-05 7.5E-10 76.5 18.3 49 714-762 181-232 (235)
106 PLN02789 farnesyltranstransfer 98.3 0.00021 4.6E-09 73.1 23.2 204 536-746 46-268 (320)
107 PRK04841 transcriptional regul 98.3 0.0012 2.5E-08 80.2 33.5 192 500-691 535-759 (903)
108 KOG0548 Molecular co-chaperone 98.2 0.0029 6.3E-08 66.0 29.4 102 635-746 365-473 (539)
109 KOG1070 rRNA processing protei 98.2 0.00013 2.9E-09 83.4 21.4 221 458-679 1455-1687(1710)
110 PLN02789 farnesyltranstransfer 98.2 0.0002 4.4E-09 73.2 21.4 186 573-761 48-249 (320)
111 KOG1125 TPR repeat-containing 98.2 2E-05 4.3E-10 82.2 13.9 193 495-691 318-526 (579)
112 KOG0624 dsRNA-activated protei 98.2 0.0039 8.4E-08 61.1 26.8 302 432-762 44-370 (504)
113 KOG1128 Uncharacterized conser 98.1 0.00014 3E-09 78.1 17.4 227 464-708 401-633 (777)
114 PRK15359 type III secretion sy 98.1 0.00011 2.4E-09 65.9 14.0 105 634-743 30-136 (144)
115 PRK10370 formate-dependent nit 98.1 0.00032 7E-09 66.7 17.8 112 577-691 54-172 (198)
116 TIGR00756 PPR pentatricopeptid 98.1 5.3E-06 1.1E-10 53.7 4.0 35 225-259 1-35 (35)
117 TIGR03302 OM_YfiO outer membra 98.1 0.00027 5.9E-09 70.1 18.1 179 496-691 33-231 (235)
118 KOG0624 dsRNA-activated protei 98.1 0.011 2.4E-07 58.0 27.7 312 299-691 43-369 (504)
119 KOG1128 Uncharacterized conser 98.0 0.00027 5.8E-09 76.0 18.1 217 492-728 394-616 (777)
120 PRK14720 transcript cleavage f 98.0 0.0019 4.2E-08 73.8 26.0 238 425-744 30-268 (906)
121 TIGR00756 PPR pentatricopeptid 98.0 7.8E-06 1.7E-10 52.9 4.4 34 630-663 2-35 (35)
122 COG5010 TadD Flp pilus assembl 98.0 0.00087 1.9E-08 63.5 18.3 123 566-691 70-196 (257)
123 KOG1914 mRNA cleavage and poly 97.9 0.038 8.3E-07 57.9 31.6 119 644-765 347-467 (656)
124 PRK15179 Vi polysaccharide bio 97.9 0.0015 3.2E-08 74.0 22.4 127 527-656 86-216 (694)
125 KOG3060 Uncharacterized conser 97.9 0.0028 6.1E-08 59.6 20.1 192 541-737 26-229 (289)
126 PF13812 PPR_3: Pentatricopept 97.9 1.4E-05 3.1E-10 51.2 3.8 34 224-257 1-34 (34)
127 PRK15359 type III secretion sy 97.9 0.00022 4.8E-09 64.0 12.3 87 603-691 30-120 (144)
128 PF13812 PPR_3: Pentatricopept 97.9 2.4E-05 5.3E-10 50.1 4.5 33 629-661 2-34 (34)
129 KOG3081 Vesicle coat complex C 97.9 0.0019 4.1E-08 61.2 18.2 173 549-733 95-276 (299)
130 KOG1070 rRNA processing protei 97.9 0.0023 5E-08 73.8 22.1 232 357-589 1454-1698(1710)
131 COG4783 Putative Zn-dependent 97.8 0.0029 6.3E-08 65.4 20.6 152 537-709 316-473 (484)
132 COG5010 TadD Flp pilus assembl 97.8 0.0025 5.4E-08 60.5 18.6 149 603-756 72-225 (257)
133 PRK14720 transcript cleavage f 97.8 0.0024 5.2E-08 73.0 22.0 189 498-733 118-311 (906)
134 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00038 8.2E-09 72.6 13.8 120 634-760 175-295 (395)
135 TIGR02552 LcrH_SycD type III s 97.8 0.00038 8.2E-09 62.0 12.2 109 650-762 5-114 (135)
136 PRK15179 Vi polysaccharide bio 97.8 0.002 4.3E-08 73.0 20.3 138 594-736 83-225 (694)
137 TIGR02552 LcrH_SycD type III s 97.7 0.00072 1.6E-08 60.2 13.5 98 565-665 20-120 (135)
138 COG4783 Putative Zn-dependent 97.7 0.0052 1.1E-07 63.6 20.6 143 506-666 316-462 (484)
139 KOG2053 Mitochondrial inherita 97.7 0.15 3.3E-06 57.0 37.2 214 205-422 21-253 (932)
140 PF13431 TPR_17: Tetratricopep 97.7 2.6E-05 5.7E-10 49.4 2.2 33 722-754 2-34 (34)
141 PF01535 PPR: PPR repeat; Int 97.7 5E-05 1.1E-09 47.4 3.3 31 225-255 1-31 (31)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0013 2.7E-08 68.8 15.0 122 501-624 174-295 (395)
143 KOG1125 TPR repeat-containing 97.6 0.0019 4.2E-08 67.8 15.9 221 536-761 294-526 (579)
144 PF01535 PPR: PPR repeat; Int 97.6 7.1E-05 1.5E-09 46.7 3.3 30 630-659 2-31 (31)
145 COG4235 Cytochrome c biogenesi 97.5 0.00077 1.7E-08 65.7 10.8 108 660-769 152-263 (287)
146 PRK15363 pathogenicity island 97.5 0.0026 5.7E-08 56.2 12.9 98 598-697 36-138 (157)
147 PRK15363 pathogenicity island 97.5 0.002 4.4E-08 56.9 12.1 99 625-761 32-131 (157)
148 KOG3081 Vesicle coat complex C 97.5 0.018 3.8E-07 54.9 18.6 187 560-754 70-262 (299)
149 PRK02603 photosystem I assembl 97.4 0.0044 9.5E-08 57.7 14.0 123 599-748 37-166 (172)
150 PF06239 ECSIT: Evolutionarily 97.4 0.0024 5.1E-08 59.1 11.1 87 625-711 44-151 (228)
151 PF09976 TPR_21: Tetratricopep 97.4 0.0085 1.8E-07 53.9 15.0 23 570-592 56-78 (145)
152 KOG3060 Uncharacterized conser 97.3 0.047 1E-06 51.7 18.9 120 538-661 97-222 (289)
153 KOG0553 TPR repeat-containing 97.3 0.0025 5.4E-08 61.8 10.9 89 607-699 91-183 (304)
154 PF09976 TPR_21: Tetratricopep 97.2 0.0096 2.1E-07 53.6 13.3 122 565-689 15-144 (145)
155 PF04840 Vps16_C: Vps16, C-ter 97.2 0.27 5.9E-06 50.4 25.1 106 498-619 179-284 (319)
156 KOG2053 Mitochondrial inherita 97.2 0.65 1.4E-05 52.2 40.6 89 500-589 440-534 (932)
157 PF14432 DYW_deaminase: DYW fa 97.1 0.00029 6.4E-09 59.7 2.8 36 769-816 2-37 (116)
158 PLN03088 SGT1, suppressor of 97.1 0.0044 9.5E-08 65.1 12.2 106 636-746 10-117 (356)
159 PF04840 Vps16_C: Vps16, C-ter 97.1 0.4 8.7E-06 49.1 25.6 105 398-518 180-284 (319)
160 PF07079 DUF1347: Protein of u 97.1 0.47 1E-05 49.1 27.1 430 304-759 16-521 (549)
161 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.0088 1.9E-07 51.6 11.7 95 630-762 4-105 (119)
162 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.013 2.8E-07 50.5 12.5 93 598-692 3-105 (119)
163 cd00189 TPR Tetratricopeptide 97.0 0.0053 1.2E-07 50.1 9.3 89 601-691 4-96 (100)
164 PF08579 RPM2: Mitochondrial r 97.0 0.0067 1.5E-07 49.6 8.8 79 228-306 29-116 (120)
165 PLN03088 SGT1, suppressor of 97.0 0.0084 1.8E-07 63.0 12.3 98 573-673 13-113 (356)
166 PF14938 SNAP: Soluble NSF att 97.0 0.46 1E-05 48.3 24.6 102 533-634 161-274 (282)
167 COG3898 Uncharacterized membra 96.9 0.54 1.2E-05 47.6 24.4 58 714-774 344-402 (531)
168 cd00189 TPR Tetratricopeptide 96.9 0.0067 1.5E-07 49.5 9.3 57 600-656 37-96 (100)
169 PF10037 MRP-S27: Mitochondria 96.9 0.017 3.7E-07 60.8 13.8 121 556-676 60-186 (429)
170 PF12895 Apc3: Anaphase-promot 96.9 0.0017 3.8E-08 52.0 5.1 79 641-758 2-83 (84)
171 KOG1538 Uncharacterized conser 96.9 0.15 3.2E-06 54.7 20.0 113 193-352 556-672 (1081)
172 KOG0553 TPR repeat-containing 96.9 0.0078 1.7E-07 58.4 10.0 98 571-671 90-190 (304)
173 KOG2041 WD40 repeat protein [G 96.9 0.8 1.7E-05 49.8 25.3 127 307-451 747-877 (1189)
174 PF08579 RPM2: Mitochondrial r 96.8 0.013 2.8E-07 48.0 9.5 80 631-710 28-116 (120)
175 PF06239 ECSIT: Evolutionarily 96.8 0.017 3.7E-07 53.6 11.5 123 559-696 44-173 (228)
176 PRK10153 DNA-binding transcrip 96.8 0.031 6.8E-07 61.4 15.8 135 625-764 334-484 (517)
177 PF05843 Suf: Suppressor of fo 96.8 0.027 5.9E-07 57.0 14.3 138 530-671 4-148 (280)
178 PF13432 TPR_16: Tetratricopep 96.8 0.0025 5.4E-08 48.0 5.2 49 714-762 12-60 (65)
179 PRK10153 DNA-binding transcrip 96.8 0.052 1.1E-06 59.7 17.2 63 627-691 419-481 (517)
180 COG3898 Uncharacterized membra 96.8 0.57 1.2E-05 47.5 22.3 186 574-762 96-292 (531)
181 PRK02603 photosystem I assembl 96.8 0.035 7.5E-07 51.7 13.8 87 529-616 37-125 (172)
182 PF12895 Apc3: Anaphase-promot 96.8 0.0052 1.1E-07 49.2 6.9 17 671-687 66-82 (84)
183 KOG2796 Uncharacterized conser 96.8 0.09 2E-06 49.9 15.6 137 529-667 179-323 (366)
184 PF10037 MRP-S27: Mitochondria 96.7 0.02 4.2E-07 60.3 12.7 118 458-575 63-186 (429)
185 KOG2280 Vacuolar assembly/sort 96.7 0.58 1.3E-05 51.5 23.5 339 252-619 425-792 (829)
186 PF14938 SNAP: Soluble NSF att 96.7 0.7 1.5E-05 47.0 23.5 85 511-622 89-180 (282)
187 PF14559 TPR_19: Tetratricopep 96.6 0.0029 6.2E-08 48.2 4.3 48 714-761 6-53 (68)
188 KOG2796 Uncharacterized conser 96.6 0.058 1.3E-06 51.2 13.3 163 600-762 139-315 (366)
189 PF05843 Suf: Suppressor of fo 96.5 0.034 7.3E-07 56.3 12.4 142 563-708 2-150 (280)
190 PF13414 TPR_11: TPR repeat; P 96.5 0.0067 1.4E-07 46.3 5.7 48 714-761 18-66 (69)
191 KOG0550 Molecular chaperone (D 96.5 0.021 4.6E-07 57.7 10.3 88 673-761 259-349 (486)
192 PF13414 TPR_11: TPR repeat; P 96.4 0.013 2.8E-07 44.7 6.9 63 627-691 2-66 (69)
193 KOG1538 Uncharacterized conser 96.4 0.27 5.9E-06 52.7 18.0 202 184-449 626-827 (1081)
194 CHL00033 ycf3 photosystem I as 96.3 0.03 6.6E-07 51.9 10.1 94 629-758 36-138 (168)
195 PF12688 TPR_5: Tetratrico pep 96.3 0.069 1.5E-06 45.6 11.1 59 633-691 6-66 (120)
196 COG4700 Uncharacterized protei 96.3 0.55 1.2E-05 42.4 16.7 124 559-684 86-214 (251)
197 PF13432 TPR_16: Tetratricopep 96.2 0.018 3.9E-07 43.3 6.7 56 634-691 3-59 (65)
198 PF12688 TPR_5: Tetratrico pep 96.2 0.11 2.4E-06 44.4 11.9 100 533-632 7-110 (120)
199 PRK10803 tol-pal system protei 96.2 0.066 1.4E-06 53.2 12.1 95 631-761 146-245 (263)
200 PF13371 TPR_9: Tetratricopept 96.2 0.012 2.6E-07 45.5 5.5 50 714-763 10-59 (73)
201 CHL00033 ycf3 photosystem I as 96.2 0.079 1.7E-06 49.1 11.9 79 529-608 37-117 (168)
202 PF14559 TPR_19: Tetratricopep 96.1 0.023 4.9E-07 43.2 6.8 50 574-624 3-52 (68)
203 COG4235 Cytochrome c biogenesi 95.9 0.28 6.1E-06 48.3 14.5 100 589-691 149-255 (287)
204 KOG0550 Molecular chaperone (D 95.8 1.5 3.2E-05 45.0 19.1 215 536-755 178-436 (486)
205 PRK10866 outer membrane biogen 95.7 1.4 3E-05 43.5 19.1 58 535-594 40-101 (243)
206 PRK10866 outer membrane biogen 95.7 0.39 8.4E-06 47.3 15.1 172 502-690 38-239 (243)
207 KOG1130 Predicted G-alpha GTPa 95.6 0.061 1.3E-06 54.3 8.8 128 564-691 197-343 (639)
208 KOG2041 WD40 repeat protein [G 95.6 4.7 0.0001 44.2 24.0 127 206-350 747-877 (1189)
209 KOG3941 Intermediate in Toll s 95.4 0.16 3.5E-06 48.8 10.5 96 616-711 53-171 (406)
210 COG4700 Uncharacterized protei 95.4 0.94 2E-05 41.0 14.4 124 631-760 92-220 (251)
211 PF03704 BTAD: Bacterial trans 95.4 0.099 2.2E-06 47.1 9.0 68 631-700 65-138 (146)
212 PF13371 TPR_9: Tetratricopept 95.2 0.081 1.7E-06 40.8 6.9 54 636-691 3-57 (73)
213 PRK10803 tol-pal system protei 95.1 0.25 5.4E-06 49.1 11.5 49 575-623 156-206 (263)
214 KOG2114 Vacuolar assembly/sort 95.0 8.2 0.00018 43.6 25.5 119 90-220 337-458 (933)
215 PRK11906 transcriptional regul 94.9 0.62 1.3E-05 49.1 13.9 47 714-760 353-399 (458)
216 PF07079 DUF1347: Protein of u 94.9 5.8 0.00013 41.5 34.8 59 638-703 472-530 (549)
217 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.14 3E-06 53.6 9.0 95 596-694 74-176 (453)
218 COG3118 Thioredoxin domain-con 94.8 0.72 1.6E-05 45.3 13.0 123 635-761 141-264 (304)
219 KOG1130 Predicted G-alpha GTPa 94.6 0.47 1E-05 48.2 11.6 93 598-690 196-302 (639)
220 KOG1920 IkappaB kinase complex 94.6 9.3 0.0002 45.0 23.0 98 501-627 957-1056(1265)
221 PF03704 BTAD: Bacterial trans 94.4 0.5 1.1E-05 42.4 10.8 48 714-761 77-124 (146)
222 COG5107 RNA14 Pre-mRNA 3'-end 94.4 7.7 0.00017 40.5 29.6 126 564-691 399-530 (660)
223 KOG2114 Vacuolar assembly/sort 94.3 12 0.00025 42.5 29.6 120 195-321 336-458 (933)
224 PF13281 DUF4071: Domain of un 94.3 8 0.00017 40.3 20.4 173 535-731 149-337 (374)
225 PF13424 TPR_12: Tetratricopep 94.2 0.074 1.6E-06 41.7 4.4 62 630-691 7-74 (78)
226 PF13281 DUF4071: Domain of un 94.2 3.2 6.9E-05 43.2 17.0 72 501-572 146-227 (374)
227 PRK15331 chaperone protein Sic 94.0 0.38 8.3E-06 43.0 8.7 83 607-691 47-133 (165)
228 PF13424 TPR_12: Tetratricopep 94.0 0.092 2E-06 41.1 4.5 60 597-656 5-74 (78)
229 KOG0543 FKBP-type peptidyl-pro 94.0 0.93 2E-05 46.5 12.5 48 714-761 272-319 (397)
230 COG5107 RNA14 Pre-mRNA 3'-end 93.9 9.5 0.00021 39.8 32.9 445 190-673 39-545 (660)
231 PF12921 ATP13: Mitochondrial 93.8 0.6 1.3E-05 40.3 9.4 94 597-706 2-96 (126)
232 PF13525 YfiO: Outer membrane 93.8 0.65 1.4E-05 44.5 10.8 54 607-662 15-74 (203)
233 PF13525 YfiO: Outer membrane 93.6 1.5 3.2E-05 42.0 13.0 47 634-682 147-197 (203)
234 PRK11906 transcriptional regul 93.6 1.7 3.6E-05 46.0 13.7 109 643-757 319-431 (458)
235 PF13512 TPR_18: Tetratricopep 93.2 1.9 4.1E-05 37.7 11.4 107 606-733 19-133 (142)
236 COG0457 NrfG FOG: TPR repeat [ 93.1 8.7 0.00019 37.1 23.2 196 563-761 60-264 (291)
237 PF13176 TPR_7: Tetratricopept 93.0 0.17 3.6E-06 32.5 3.7 26 735-760 1-26 (36)
238 PLN03098 LPA1 LOW PSII ACCUMUL 93.0 0.65 1.4E-05 48.8 9.7 67 559-625 72-140 (453)
239 KOG4555 TPR repeat-containing 92.9 1.8 4E-05 36.6 10.4 87 606-693 52-145 (175)
240 KOG1941 Acetylcholine receptor 92.9 7.6 0.00016 39.3 16.3 161 530-690 86-273 (518)
241 KOG2280 Vacuolar assembly/sort 92.7 20 0.00043 40.2 27.2 304 366-689 443-770 (829)
242 COG1729 Uncharacterized protei 92.6 1.4 3.1E-05 42.9 10.9 100 631-734 145-250 (262)
243 KOG2610 Uncharacterized conser 92.6 1.3 2.8E-05 44.0 10.5 114 641-757 116-233 (491)
244 PRK15331 chaperone protein Sic 92.4 1.3 2.9E-05 39.7 9.6 48 714-761 86-133 (165)
245 PF12921 ATP13: Mitochondrial 92.3 0.71 1.5E-05 39.9 7.7 50 557-606 47-97 (126)
246 PF10300 DUF3808: Protein of u 92.1 4.3 9.4E-05 44.5 15.4 157 532-691 193-375 (468)
247 smart00299 CLH Clathrin heavy 92.1 3.8 8.3E-05 36.3 12.7 83 567-653 12-94 (140)
248 PF13428 TPR_14: Tetratricopep 92.0 0.26 5.7E-06 33.3 3.9 27 714-740 16-42 (44)
249 KOG3941 Intermediate in Toll s 91.9 0.95 2.1E-05 43.8 8.5 110 211-320 52-185 (406)
250 COG4105 ComL DNA uptake lipopr 91.9 9.3 0.0002 37.1 15.2 136 608-762 45-196 (254)
251 PF02259 FAT: FAT domain; Int 91.9 17 0.00036 38.3 19.6 32 714-745 273-304 (352)
252 COG3118 Thioredoxin domain-con 91.6 16 0.00034 36.4 18.8 117 571-691 143-264 (304)
253 KOG0543 FKBP-type peptidyl-pro 91.2 2.1 4.5E-05 44.1 10.7 95 666-762 260-355 (397)
254 smart00299 CLH Clathrin heavy 91.1 10 0.00023 33.5 14.4 15 495-509 40-54 (140)
255 PF00637 Clathrin: Region in C 90.9 0.094 2E-06 47.0 0.9 86 264-352 12-97 (143)
256 KOG1258 mRNA processing protei 90.3 32 0.00069 37.7 29.8 179 561-747 296-489 (577)
257 KOG2610 Uncharacterized conser 90.3 4.5 9.8E-05 40.4 11.6 112 510-623 117-235 (491)
258 COG0457 NrfG FOG: TPR repeat [ 90.2 18 0.00039 34.7 24.9 90 638-731 177-268 (291)
259 PF09205 DUF1955: Domain of un 90.1 7.2 0.00016 33.4 11.0 62 532-594 91-152 (161)
260 PF13428 TPR_14: Tetratricopep 90.0 1 2.2E-05 30.4 5.2 33 630-664 3-35 (44)
261 PF04184 ST7: ST7 protein; In 89.3 33 0.00072 36.8 17.6 101 632-734 263-381 (539)
262 COG3629 DnrI DNA-binding trans 89.1 2.3 5E-05 42.2 8.8 76 597-672 153-236 (280)
263 PF10300 DUF3808: Protein of u 88.9 17 0.00036 40.0 16.4 26 565-590 191-216 (468)
264 PF00515 TPR_1: Tetratricopept 88.9 0.92 2E-05 28.4 4.1 32 629-662 2-33 (34)
265 KOG4555 TPR repeat-containing 88.8 5 0.00011 34.1 9.2 90 635-730 50-146 (175)
266 PF13170 DUF4003: Protein of u 88.8 4.8 0.0001 40.9 11.2 132 543-703 78-222 (297)
267 PF07719 TPR_2: Tetratricopept 88.5 0.73 1.6E-05 28.8 3.5 29 733-761 1-29 (34)
268 KOG4648 Uncharacterized conser 87.9 2.3 5E-05 42.4 7.8 88 637-734 106-200 (536)
269 PF07721 TPR_4: Tetratricopept 87.8 0.69 1.5E-05 27.0 2.7 24 734-757 2-25 (26)
270 KOG2066 Vacuolar assembly/sort 87.8 55 0.0012 37.2 22.9 75 295-372 393-467 (846)
271 PF04053 Coatomer_WDAD: Coatom 87.6 9.8 0.00021 41.2 13.3 103 502-621 324-426 (443)
272 PF04053 Coatomer_WDAD: Coatom 87.6 4.6 9.9E-05 43.6 10.8 131 233-389 270-402 (443)
273 COG3629 DnrI DNA-binding trans 87.4 4.6 9.9E-05 40.1 9.7 76 629-706 154-235 (280)
274 PF09613 HrpB1_HrpK: Bacterial 87.4 22 0.00047 32.0 13.0 51 573-624 21-71 (160)
275 PF09205 DUF1955: Domain of un 87.3 18 0.00039 31.1 12.1 137 538-695 13-152 (161)
276 PF13176 TPR_7: Tetratricopept 87.0 1.4 3.1E-05 28.1 4.1 25 631-655 2-26 (36)
277 PF13374 TPR_10: Tetratricopep 87.0 0.93 2E-05 29.9 3.5 28 734-761 3-30 (42)
278 PF04097 Nic96: Nup93/Nic96; 86.8 36 0.00079 38.9 18.0 92 603-697 420-536 (613)
279 PF04097 Nic96: Nup93/Nic96; 86.6 38 0.00082 38.8 17.9 86 534-624 265-354 (613)
280 COG4105 ComL DNA uptake lipopr 86.5 34 0.00073 33.4 18.2 56 634-691 173-232 (254)
281 KOG1920 IkappaB kinase complex 86.4 82 0.0018 37.8 20.1 52 308-370 894-945 (1265)
282 PF07035 Mic1: Colon cancer-as 86.3 22 0.00048 32.4 12.7 136 244-389 14-149 (167)
283 KOG4234 TPR repeat-containing 86.0 5.5 0.00012 36.7 8.6 87 637-761 104-196 (271)
284 COG4785 NlpI Lipoprotein NlpI, 85.9 31 0.00068 32.5 14.9 170 578-761 81-265 (297)
285 PF00515 TPR_1: Tetratricopept 85.8 1.3 2.8E-05 27.7 3.5 28 734-761 2-29 (34)
286 COG4649 Uncharacterized protei 85.6 11 0.00024 34.0 10.0 30 632-661 171-200 (221)
287 PF07719 TPR_2: Tetratricopept 85.5 1.9 4.1E-05 26.8 4.2 31 630-662 3-33 (34)
288 PF13170 DUF4003: Protein of u 85.0 18 0.0004 36.7 13.0 101 543-672 119-226 (297)
289 PF07035 Mic1: Colon cancer-as 84.7 31 0.00068 31.4 15.0 33 384-416 18-50 (167)
290 PF13431 TPR_17: Tetratricopep 84.6 1.3 2.8E-05 27.9 3.0 31 586-617 3-33 (34)
291 PF13181 TPR_8: Tetratricopept 83.7 2.1 4.6E-05 26.6 3.8 28 734-761 2-29 (34)
292 KOG4570 Uncharacterized conser 83.6 8.1 0.00018 38.3 9.1 96 592-691 59-163 (418)
293 KOG1550 Extracellular protein 83.5 38 0.00082 38.2 16.1 131 631-765 291-429 (552)
294 PF13174 TPR_6: Tetratricopept 83.2 1.4 3E-05 27.2 2.7 28 735-762 2-29 (33)
295 COG4649 Uncharacterized protei 82.6 21 0.00046 32.3 10.4 48 306-353 70-122 (221)
296 COG1729 Uncharacterized protei 82.4 12 0.00025 36.8 9.8 26 666-691 218-243 (262)
297 PF10602 RPN7: 26S proteasome 82.2 19 0.00041 33.5 10.9 93 530-624 39-140 (177)
298 PF14853 Fis1_TPR_C: Fis1 C-te 81.7 9.4 0.0002 27.0 6.6 51 735-811 3-53 (53)
299 KOG1941 Acetylcholine receptor 81.4 29 0.00063 35.4 12.1 216 539-758 18-271 (518)
300 KOG2396 HAT (Half-A-TPR) repea 81.0 17 0.00037 38.7 10.9 96 644-742 87-183 (568)
301 PF08631 SPO22: Meiosis protei 80.9 66 0.0014 32.5 26.6 100 563-663 85-192 (278)
302 PF10602 RPN7: 26S proteasome 80.4 16 0.00036 33.8 9.9 16 306-321 125-140 (177)
303 PRK09687 putative lyase; Provi 79.9 72 0.0016 32.3 25.5 73 495-572 205-277 (280)
304 PF13181 TPR_8: Tetratricopept 79.7 2.9 6.3E-05 26.0 3.3 30 630-661 3-32 (34)
305 PF14561 TPR_20: Tetratricopep 79.6 5.9 0.00013 31.8 5.8 44 719-762 8-51 (90)
306 KOG1585 Protein required for f 79.3 63 0.0014 31.3 15.2 83 603-686 156-250 (308)
307 COG2909 MalT ATP-dependent tra 79.3 1.3E+02 0.0029 35.0 23.0 192 573-764 426-649 (894)
308 PF11207 DUF2989: Protein of u 79.0 9.5 0.00021 35.6 7.6 73 680-754 123-199 (203)
309 PF10345 Cohesin_load: Cohesin 78.9 1.3E+02 0.0028 34.6 35.4 23 738-760 582-604 (608)
310 PF13512 TPR_18: Tetratricopep 78.7 46 0.001 29.3 11.6 71 537-607 20-92 (142)
311 TIGR02561 HrpB1_HrpK type III 78.4 48 0.001 29.4 12.1 49 575-624 23-71 (153)
312 PF06552 TOM20_plant: Plant sp 77.7 23 0.00051 32.4 9.4 65 644-710 51-125 (186)
313 COG1747 Uncharacterized N-term 77.7 1.1E+02 0.0024 33.1 18.2 160 596-762 65-234 (711)
314 KOG1550 Extracellular protein 77.6 1.3E+02 0.0028 34.0 17.8 32 732-763 470-505 (552)
315 PF00637 Clathrin: Region in C 76.7 2.3 4.9E-05 38.0 2.9 85 365-452 12-96 (143)
316 TIGR02561 HrpB1_HrpK type III 76.6 5.6 0.00012 35.0 5.0 50 714-763 25-74 (153)
317 PF09613 HrpB1_HrpK: Bacterial 76.3 7 0.00015 35.0 5.7 50 714-763 25-74 (160)
318 KOG3364 Membrane protein invol 76.2 15 0.00032 31.8 7.2 48 714-761 50-99 (149)
319 KOG1586 Protein required for f 76.0 77 0.0017 30.5 17.0 70 672-743 163-241 (288)
320 PRK09687 putative lyase; Provi 75.4 97 0.0021 31.3 26.5 193 525-730 66-265 (280)
321 PF13374 TPR_10: Tetratricopep 74.6 7.3 0.00016 25.4 4.4 27 630-656 4-30 (42)
322 cd00923 Cyt_c_Oxidase_Va Cytoc 73.9 17 0.00037 29.2 6.6 47 240-286 23-69 (103)
323 TIGR02508 type_III_yscG type I 73.4 46 0.001 27.1 8.8 85 578-666 21-105 (115)
324 KOG1585 Protein required for f 73.2 93 0.002 30.1 16.1 139 499-650 94-249 (308)
325 TIGR03504 FimV_Cterm FimV C-te 73.0 6.5 0.00014 26.5 3.6 27 737-763 3-29 (44)
326 KOG4570 Uncharacterized conser 72.8 32 0.0007 34.4 9.6 101 491-592 59-165 (418)
327 PF13762 MNE1: Mitochondrial s 71.7 34 0.00073 30.3 8.7 91 182-272 26-128 (145)
328 PHA02875 ankyrin repeat protei 70.8 1.6E+02 0.0034 31.8 16.6 113 301-422 72-192 (413)
329 COG4455 ImpE Protein of avirul 70.0 58 0.0013 30.9 10.1 73 632-706 5-80 (273)
330 KOG0276 Vesicle coat complex C 69.4 26 0.00057 38.2 8.9 100 304-420 647-746 (794)
331 PF06552 TOM20_plant: Plant sp 68.9 50 0.0011 30.3 9.3 45 716-760 52-100 (186)
332 KOG4507 Uncharacterized conser 68.3 20 0.00044 38.8 7.8 124 613-744 589-721 (886)
333 PF02284 COX5A: Cytochrome c o 68.0 24 0.00053 28.7 6.4 47 242-288 28-74 (108)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 67.3 43 0.00094 27.1 7.5 63 645-709 24-87 (103)
335 KOG0686 COP9 signalosome, subu 66.5 80 0.0017 33.0 11.2 130 598-731 151-307 (466)
336 PF08631 SPO22: Meiosis protei 65.5 1.6E+02 0.0034 29.8 22.7 18 637-654 255-272 (278)
337 PF04190 DUF410: Protein of un 65.3 1.5E+02 0.0033 29.5 18.0 106 508-624 2-117 (260)
338 PF04184 ST7: ST7 protein; In 64.8 95 0.0021 33.5 11.7 56 568-623 265-321 (539)
339 COG5159 RPN6 26S proteasome re 64.7 57 0.0012 32.2 9.3 124 637-760 12-152 (421)
340 smart00028 TPR Tetratricopepti 64.3 11 0.00024 22.0 3.4 28 734-761 2-29 (34)
341 KOG2066 Vacuolar assembly/sort 63.7 2.8E+02 0.006 31.9 21.7 26 328-353 508-533 (846)
342 PF07575 Nucleopor_Nup85: Nup8 63.4 2.4E+02 0.0052 32.1 15.9 148 547-708 390-540 (566)
343 KOG2063 Vacuolar assembly/sort 63.4 2.6E+02 0.0056 33.2 15.9 52 673-746 694-745 (877)
344 PF02284 COX5A: Cytochrome c o 63.4 42 0.00091 27.4 6.9 62 646-709 28-90 (108)
345 PF13762 MNE1: Mitochondrial s 62.2 58 0.0013 28.8 8.3 90 78-168 28-129 (145)
346 KOG4234 TPR repeat-containing 62.1 43 0.00094 31.2 7.6 56 537-593 105-165 (271)
347 PF11207 DUF2989: Protein of u 62.0 68 0.0015 30.2 9.1 73 544-617 123-198 (203)
348 KOG1258 mRNA processing protei 61.7 2.6E+02 0.0057 31.0 28.7 177 495-677 296-489 (577)
349 PF13174 TPR_6: Tetratricopept 61.4 11 0.00024 22.9 2.9 23 634-656 6-28 (33)
350 KOG1586 Protein required for f 61.0 1.6E+02 0.0035 28.4 15.2 15 407-421 26-40 (288)
351 smart00028 TPR Tetratricopepti 60.9 16 0.00034 21.3 3.7 27 630-656 3-29 (34)
352 COG2909 MalT ATP-dependent tra 60.3 3.4E+02 0.0073 31.9 21.5 43 240-287 196-238 (894)
353 PRK11619 lytic murein transgly 59.6 3.3E+02 0.0071 31.5 33.7 92 571-665 416-513 (644)
354 KOG2063 Vacuolar assembly/sort 57.9 3.6E+02 0.0078 32.0 15.8 129 120-271 506-638 (877)
355 COG4785 NlpI Lipoprotein NlpI, 57.8 1.8E+02 0.0038 27.8 14.3 159 528-693 100-267 (297)
356 PF10579 Rapsyn_N: Rapsyn N-te 57.1 27 0.00059 27.0 4.6 47 640-686 18-66 (80)
357 TIGR02508 type_III_yscG type I 56.8 73 0.0016 26.0 7.1 78 275-355 21-98 (115)
358 TIGR01503 MthylAspMut_E methyl 56.5 26 0.00055 37.2 6.0 198 576-787 68-296 (480)
359 COG3947 Response regulator con 56.2 2.1E+02 0.0045 28.7 11.4 147 613-761 149-341 (361)
360 COG4455 ImpE Protein of avirul 55.3 49 0.0011 31.4 6.9 50 736-791 207-257 (273)
361 PF12862 Apc5: Anaphase-promot 53.9 40 0.00087 27.3 5.7 27 735-761 43-69 (94)
362 PRK13342 recombination factor 53.0 3.3E+02 0.0071 29.4 15.1 47 428-474 229-278 (413)
363 PF13929 mRNA_stabil: mRNA sta 52.5 2.6E+02 0.0056 28.1 13.0 53 493-545 199-256 (292)
364 PF09986 DUF2225: Uncharacteri 52.5 60 0.0013 31.2 7.5 48 715-762 141-194 (214)
365 KOG4642 Chaperone-dependent E3 52.2 1.4E+02 0.003 29.0 9.4 106 612-720 25-138 (284)
366 KOG4642 Chaperone-dependent E3 51.0 56 0.0012 31.5 6.7 47 714-760 59-105 (284)
367 PHA02875 ankyrin repeat protei 50.7 3.5E+02 0.0076 29.1 17.2 106 280-394 116-229 (413)
368 cd08819 CARD_MDA5_2 Caspase ac 50.6 96 0.0021 24.6 6.8 38 609-647 48-85 (88)
369 PF07163 Pex26: Pex26 protein; 50.5 1.8E+02 0.0038 29.0 10.1 86 534-621 90-182 (309)
370 KOG1464 COP9 signalosome, subu 50.3 2.6E+02 0.0057 27.5 13.5 177 509-686 40-254 (440)
371 PF14853 Fis1_TPR_C: Fis1 C-te 49.7 51 0.0011 23.3 4.8 35 633-669 6-40 (53)
372 PF10366 Vps39_1: Vacuolar sor 49.6 59 0.0013 27.2 6.1 39 512-555 29-67 (108)
373 KOG0276 Vesicle coat complex C 49.4 2E+02 0.0044 31.9 11.2 100 405-521 647-746 (794)
374 PF02259 FAT: FAT domain; Int 48.2 3.4E+02 0.0074 28.2 20.9 63 528-590 147-212 (352)
375 PF15469 Sec5: Exocyst complex 48.1 1.1E+02 0.0024 28.4 8.6 28 747-774 153-180 (182)
376 KOG0890 Protein kinase of the 48.0 8.2E+02 0.018 32.6 33.3 110 629-743 1671-1799(2382)
377 KOG4279 Serine/threonine prote 47.6 1.7E+02 0.0036 33.3 10.4 19 714-732 381-399 (1226)
378 PF11846 DUF3366: Domain of un 47.5 42 0.0009 31.7 5.7 46 715-761 127-172 (193)
379 KOG4648 Uncharacterized conser 47.1 62 0.0013 32.8 6.6 86 671-759 105-191 (536)
380 TIGR03504 FimV_Cterm FimV C-te 47.0 34 0.00073 23.1 3.4 23 634-656 5-27 (44)
381 COG2976 Uncharacterized protei 46.5 2.6E+02 0.0055 26.3 13.2 87 604-692 96-188 (207)
382 PF12069 DUF3549: Protein of u 46.4 3.6E+02 0.0077 27.9 12.1 119 603-729 172-296 (340)
383 PF14689 SPOB_a: Sensor_kinase 45.7 33 0.00071 25.2 3.6 44 646-691 8-51 (62)
384 KOG1464 COP9 signalosome, subu 43.5 3.3E+02 0.0073 26.8 19.2 200 389-618 20-252 (440)
385 COG0790 FOG: TPR repeat, SEL1 43.2 3.7E+02 0.0079 27.2 18.2 47 714-763 206-267 (292)
386 COG2178 Predicted RNA-binding 42.3 2E+02 0.0042 26.9 8.5 115 607-725 39-181 (204)
387 COG3947 Response regulator con 41.8 3.8E+02 0.0082 27.0 14.5 58 631-690 282-340 (361)
388 KOG2034 Vacuolar sorting prote 41.2 6.6E+02 0.014 29.6 22.5 52 497-553 505-556 (911)
389 PF11848 DUF3368: Domain of un 40.7 75 0.0016 21.9 4.5 31 675-705 14-44 (48)
390 PF09670 Cas_Cas02710: CRISPR- 40.6 2.6E+02 0.0056 29.8 10.8 54 637-691 140-197 (379)
391 PF10366 Vps39_1: Vacuolar sor 40.5 2.2E+02 0.0047 23.8 8.5 27 630-656 41-67 (108)
392 PF07163 Pex26: Pex26 protein; 40.5 1.8E+02 0.0038 29.0 8.4 85 231-317 90-181 (309)
393 TIGR02710 CRISPR-associated pr 40.3 3.2E+02 0.0069 28.9 10.9 55 635-689 137-197 (380)
394 PRK10941 hypothetical protein; 40.2 2E+02 0.0043 28.8 9.2 76 631-708 184-261 (269)
395 PF10345 Cohesin_load: Cohesin 39.9 6.3E+02 0.014 29.0 30.6 29 526-554 571-604 (608)
396 PF13929 mRNA_stabil: mRNA sta 39.8 4.1E+02 0.0089 26.8 14.2 52 594-645 199-255 (292)
397 PF09477 Type_III_YscG: Bacter 39.4 2.3E+02 0.0049 23.7 7.5 79 274-355 21-99 (116)
398 KOG4507 Uncharacterized conser 37.8 1.1E+02 0.0023 33.7 7.1 124 512-636 589-718 (886)
399 PRK15180 Vi polysaccharide bio 37.1 3.8E+02 0.0082 28.9 10.7 129 559-689 286-417 (831)
400 KOG3824 Huntingtin interacting 36.9 1.4E+02 0.003 29.9 7.2 54 714-771 131-184 (472)
401 PF11663 Toxin_YhaV: Toxin wit 36.5 47 0.001 28.8 3.5 34 234-269 105-138 (140)
402 COG2976 Uncharacterized protei 36.4 3.7E+02 0.0081 25.3 13.6 89 570-658 97-189 (207)
403 KOG0403 Neoplastic transformat 36.4 5.7E+02 0.012 27.4 18.1 337 91-457 218-574 (645)
404 KOG2908 26S proteasome regulat 36.2 2.4E+02 0.0052 28.9 8.8 38 634-671 121-164 (380)
405 COG5602 SIN3 Histone deacetyla 36.2 3.9E+02 0.0085 31.2 11.2 147 642-803 547-702 (1163)
406 KOG2297 Predicted translation 36.1 4.7E+02 0.01 26.4 13.4 15 297-311 324-338 (412)
407 PRK10941 hypothetical protein; 36.0 62 0.0013 32.4 4.9 48 714-761 196-243 (269)
408 PF11848 DUF3368: Domain of un 35.6 1.2E+02 0.0026 20.9 4.9 32 235-266 13-44 (48)
409 PF11663 Toxin_YhaV: Toxin wit 35.1 39 0.00085 29.2 2.9 34 537-572 105-138 (140)
410 COG0790 FOG: TPR repeat, SEL1 34.6 4.9E+02 0.011 26.2 16.0 50 713-764 169-222 (292)
411 smart00544 MA3 Domain in DAP-5 34.3 2.8E+02 0.006 23.2 8.6 23 633-655 7-29 (113)
412 COG5191 Uncharacterized conser 34.2 1.2E+02 0.0026 30.5 6.3 78 660-739 103-182 (435)
413 PF10579 Rapsyn_N: Rapsyn N-te 34.2 1.1E+02 0.0023 23.9 4.7 46 539-584 18-65 (80)
414 KOG4077 Cytochrome c oxidase, 33.6 1.6E+02 0.0035 25.2 6.1 47 242-288 67-113 (149)
415 PF09477 Type_III_YscG: Bacter 33.5 2.8E+02 0.0062 23.1 8.4 77 577-656 21-97 (116)
416 PRK09169 hypothetical protein; 33.5 1.3E+03 0.029 30.8 48.5 399 358-759 286-776 (2316)
417 PF08311 Mad3_BUB1_I: Mad3/BUB 33.4 3.2E+02 0.0069 23.6 9.5 44 646-689 81-125 (126)
418 PF07575 Nucleopor_Nup85: Nup8 33.4 2.2E+02 0.0048 32.3 9.5 57 258-316 404-460 (566)
419 PF02847 MA3: MA3 domain; Int 33.3 72 0.0016 26.8 4.4 22 633-654 7-28 (113)
420 PF07720 TPR_3: Tetratricopept 33.1 63 0.0014 20.7 2.9 24 734-757 2-25 (36)
421 PF11846 DUF3366: Domain of un 32.7 1.1E+02 0.0023 28.9 5.9 42 648-691 131-172 (193)
422 PF08967 DUF1884: Domain of un 32.5 49 0.0011 25.5 2.7 23 793-815 8-30 (85)
423 KOG4279 Serine/threonine prote 32.5 6.9E+02 0.015 28.8 12.1 100 537-663 297-399 (1226)
424 PF14689 SPOB_a: Sensor_kinase 32.4 54 0.0012 24.1 2.9 25 632-656 27-51 (62)
425 PRK10564 maltose regulon perip 31.5 76 0.0016 31.9 4.6 45 626-670 254-299 (303)
426 smart00386 HAT HAT (Half-A-TPR 31.2 79 0.0017 18.7 3.3 27 715-741 3-29 (33)
427 PF04190 DUF410: Protein of un 30.4 5.6E+02 0.012 25.5 15.8 86 436-521 20-115 (260)
428 cd08819 CARD_MDA5_2 Caspase ac 30.2 2.9E+02 0.0062 22.1 7.1 38 407-445 48-85 (88)
429 PF08424 NRDE-2: NRDE-2, neces 30.0 6.4E+02 0.014 26.1 12.6 29 669-697 160-189 (321)
430 KOG0991 Replication factor C, 30.0 5.3E+02 0.011 25.1 11.0 47 617-664 228-274 (333)
431 COG5159 RPN6 26S proteasome re 29.7 5.9E+02 0.013 25.5 13.3 156 535-690 11-192 (421)
432 cd02679 MIT_spastin MIT: domai 29.4 1.9E+02 0.0042 22.5 5.6 18 744-761 50-67 (79)
433 KOG1308 Hsp70-interacting prot 29.3 34 0.00074 34.7 1.9 54 716-769 165-218 (377)
434 PF13934 ELYS: Nuclear pore co 29.3 5.4E+02 0.012 25.0 10.3 51 603-654 114-166 (226)
435 PRK10564 maltose regulon perip 28.4 89 0.0019 31.4 4.5 39 226-264 259-297 (303)
436 PRK13800 putative oxidoreducta 28.3 1.2E+03 0.025 28.5 25.3 255 415-691 624-880 (897)
437 COG0735 Fur Fe2+/Zn2+ uptake r 28.2 3E+02 0.0065 24.5 7.5 63 549-612 8-70 (145)
438 PF12796 Ank_2: Ankyrin repeat 28.1 2.7E+02 0.0058 21.7 6.8 15 346-360 40-54 (89)
439 smart00544 MA3 Domain in DAP-5 27.9 3.5E+02 0.0076 22.5 7.7 23 532-554 7-29 (113)
440 KOG4077 Cytochrome c oxidase, 27.7 3.2E+02 0.0069 23.6 6.8 44 547-590 69-112 (149)
441 KOG0686 COP9 signalosome, subu 27.3 7.8E+02 0.017 26.2 11.2 58 296-353 152-215 (466)
442 PF11838 ERAP1_C: ERAP1-like C 26.9 7E+02 0.015 25.5 15.6 80 578-657 146-230 (324)
443 cd08326 CARD_CASP9 Caspase act 26.0 1.6E+02 0.0035 23.3 4.8 60 180-243 21-80 (84)
444 COG4016 Uncharacterized protei 25.3 1.9E+02 0.0042 24.8 5.2 40 722-761 57-96 (165)
445 PF12862 Apc5: Anaphase-promot 25.3 3.6E+02 0.0078 21.7 7.1 53 639-691 9-69 (94)
446 PRK13342 recombination factor 25.3 8.8E+02 0.019 26.1 19.0 117 544-678 154-280 (413)
447 KOG0376 Serine-threonine phosp 25.0 1.7E+02 0.0037 31.5 6.1 121 635-816 11-132 (476)
448 PRK11619 lytic murein transgly 24.9 1.1E+03 0.024 27.2 36.9 193 495-699 311-512 (644)
449 COG1747 Uncharacterized N-term 24.7 9.6E+02 0.021 26.4 23.2 91 428-523 68-158 (711)
450 PF12926 MOZART2: Mitotic-spin 23.9 3.7E+02 0.0081 21.4 6.3 42 381-422 29-70 (88)
451 PF10155 DUF2363: Uncharacteri 23.8 4.8E+02 0.01 22.6 9.8 94 227-320 21-124 (126)
452 COG5108 RPO41 Mitochondrial DN 23.7 3.2E+02 0.0069 30.8 7.8 71 299-372 33-115 (1117)
453 PRK09462 fur ferric uptake reg 23.5 4.3E+02 0.0094 23.5 7.8 61 552-613 7-68 (148)
454 smart00638 LPD_N Lipoprotein N 23.5 1.1E+03 0.024 26.7 21.7 23 498-520 342-364 (574)
455 smart00777 Mad3_BUB1_I Mad3/BU 23.2 4.1E+02 0.0089 23.0 7.1 43 645-687 80-123 (125)
456 COG4976 Predicted methyltransf 23.2 1.4E+02 0.0031 28.7 4.5 50 714-763 10-59 (287)
457 KOG3364 Membrane protein invol 23.1 5.2E+02 0.011 22.7 10.0 72 660-734 29-106 (149)
458 PF02847 MA3: MA3 domain; Int 22.8 1.7E+02 0.0037 24.4 4.9 21 533-553 8-28 (113)
459 KOG2471 TPR repeat-containing 22.7 8.3E+02 0.018 26.7 10.3 53 714-769 221-273 (696)
460 KOG4334 Uncharacterized conser 22.6 26 0.00056 36.9 -0.3 150 556-711 409-573 (650)
461 KOG0687 26S proteasome regulat 22.6 8.6E+02 0.019 25.0 12.8 93 599-691 106-209 (393)
462 PF04762 IKI3: IKI3 family; I 22.5 1.5E+03 0.032 27.7 14.7 100 631-758 815-926 (928)
463 KOG3824 Huntingtin interacting 22.0 2.8E+02 0.0061 27.9 6.4 24 638-663 126-149 (472)
464 PRK13800 putative oxidoreducta 21.8 1.5E+03 0.032 27.6 21.9 255 213-489 624-880 (897)
465 PF11817 Foie-gras_1: Foie gra 21.5 5E+02 0.011 25.6 8.6 57 633-689 183-244 (247)
466 PF11768 DUF3312: Protein of u 21.3 1.2E+03 0.025 26.1 12.1 90 601-691 412-506 (545)
467 PF04034 DUF367: Domain of unk 21.2 5.1E+02 0.011 22.4 7.0 58 596-653 65-124 (127)
468 KOG2034 Vacuolar sorting prote 21.1 1.4E+03 0.031 27.1 24.6 177 465-656 508-695 (911)
469 PF13934 ELYS: Nuclear pore co 20.8 7.8E+02 0.017 23.9 11.8 72 568-642 114-186 (226)
470 KOG0292 Vesicle coat complex C 20.5 1.5E+03 0.032 27.0 24.0 133 302-456 651-783 (1202)
471 PF02607 B12-binding_2: B12 bi 20.2 1.4E+02 0.003 23.0 3.5 39 639-677 12-50 (79)
472 cd08332 CARD_CASP2 Caspase act 20.2 2.7E+02 0.0059 22.3 5.1 36 203-238 44-79 (90)
473 PF04781 DUF627: Protein of un 20.0 5.4E+02 0.012 21.7 7.7 98 636-757 4-102 (111)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-113 Score=1006.09 Aligned_cols=696 Identities=32% Similarity=0.579 Sum_probs=681.6
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcc
Q 039792 115 ERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVY 194 (819)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 194 (819)
.++..++|.+|.+|++.|++++|+.+|++| ...|+.|+..+|..++++|...+.+. .+.++|..+.+.|..+++.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~ 122 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVE----EGSRVCSRALSSHPSLGVR 122 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCCCChhHHHHHHHHHhhCCCHH----HHHHHHHHHHHcCCCCCch
Confidence 467778999999999999999999999999 78889999999999999999888755 7889999999999999999
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQF 274 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 274 (819)
++|+|+.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..++
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 039792 275 VGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRS 354 (819)
Q Consensus 275 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (819)
+..+.++|..+.+.|+.||..++|+|+.+|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHH
Q 039792 355 GWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIE 434 (819)
Q Consensus 355 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 434 (819)
|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.++|+++||++|.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHH
Q 039792 435 GYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKD 514 (819)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 514 (819)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++|+||++|+++|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 039792 515 ARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 515 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999986 59999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 039792 595 FDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACS 674 (819)
Q Consensus 595 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 674 (819)
+|..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcc--------------------cc-----------hhhhHHHHH
Q 039792 675 HAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRN--------------------VW-----------NVELGRYAA 722 (819)
Q Consensus 675 ~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~--------------------~w-----------~~~~a~~~~ 722 (819)
+.|++++|.++|++|.+ +|+.|+..||+||+++|+|+ .| |++.|+.++
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999999995 99999999999999999998 34 889999999
Q ss_pred HHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHH
Q 039792 723 EMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNL 802 (819)
Q Consensus 723 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l 802 (819)
+++++++|++++.|+.|+|+|+..|+|++|.++++.|+++|++|+||+||||++|++|.|++||++||+.++||++|++|
T Consensus 681 ~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l 760 (857)
T PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGF 760 (857)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcCCCCC
Q 039792 803 ILHIKGVGYVPNTSA 817 (819)
Q Consensus 803 ~~~~~~~~~~~~~~~ 817 (819)
..+|++.||+||++.
T Consensus 761 ~~~~~~~g~~~~~~~ 775 (857)
T PLN03077 761 YEKMKASGLAGSESS 775 (857)
T ss_pred HHHHHhCCcCCCcch
Confidence 999999999999874
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.1e-94 Score=846.26 Aligned_cols=642 Identities=27% Similarity=0.476 Sum_probs=621.4
Q ss_pred CcchhhHHHHhhccCCCCCCCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCCCCcchHHHH
Q 039792 45 STKRSVLAWFLQRPLPDNFNNKRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSL 124 (819)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 124 (819)
.++..+|..++..|... +.+..+.++|..+.+.|..++..++|.|+.+|+++|+++.|+++|++|++||+++||++
T Consensus 83 ~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~l 158 (857)
T PLN03077 83 PVDEDAYVALFRLCEWK----RAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVL 158 (857)
T ss_pred CCChhHHHHHHHHHhhC----CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHH
Confidence 44555677777777665 77889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHH
Q 039792 125 VSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYA 204 (819)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~ 204 (819)
|++|++.|++++|+++|++| ...|+.||.+||+++|++|+..+++. .++++|..+.+.|+.||+.++|+||++|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M-~~~g~~Pd~~t~~~ll~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRM-LWAGVRPDVYTFPCVLRTCGGIPDLA----RGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHhCCccchh----hHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 99999999999999999999 77899999999999999999988865 78999999999999999999999999999
Q ss_pred hcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHH
Q 039792 205 KNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAH 284 (819)
Q Consensus 205 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 284 (819)
++|++++|.++|++|+.+|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|..
T Consensus 234 k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred cCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH
Q 039792 285 VLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACS 364 (819)
Q Consensus 285 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 364 (819)
+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 039792 365 SVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSE 444 (819)
Q Consensus 365 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 444 (819)
.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||++|.+|+++|+.++
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC
Q 039792 445 ALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ 524 (819)
Q Consensus 445 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 524 (819)
|+++|++|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.++..++|+||++|+++|++++|.++|+++ .
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 9999999985 5999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH-HhCCCCchhHHHHH
Q 039792 525 RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLI-KLGLDFDSFITSAL 603 (819)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l 603 (819)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|. +.|+.|+..+|+++
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 78999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHH
Q 039792 604 IDMYAKCGSLEDAYETFGSTT-WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIED 681 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~ 681 (819)
+++|++.|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+....+++.+ +.|+.. .|..|.+.|+..|+|++
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHH
Confidence 999999999999999999997 99999999999999999999999999999998 889764 57777789999999999
Q ss_pred HHHHHHHHHhcCCccCch
Q 039792 682 GLDHFQSMAGFGIEPGME 699 (819)
Q Consensus 682 a~~~~~~m~~~g~~p~~~ 699 (819)
|.++.+.|.+.|++++..
T Consensus 710 a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 710 VARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHHHHHcCCCCCCC
Confidence 999999999999988753
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-83 Score=736.05 Aligned_cols=529 Identities=30% Similarity=0.486 Sum_probs=500.2
Q ss_pred CCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHH
Q 039792 220 MVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETD-VVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVIN 298 (819)
Q Consensus 220 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 298 (819)
..++..+|+.+|.+|++.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34577899999999999999999999999998764 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhh
Q 039792 299 VLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQ 378 (819)
Q Consensus 299 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 378 (819)
.|+++|+++|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 039792 379 GRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVP 458 (819)
Q Consensus 379 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 458 (819)
+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHH
Q 039792 459 PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYT 538 (819)
Q Consensus 459 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 538 (819)
||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+|++||++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 539 QQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIK-LGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 699999999999999988888888877
Q ss_pred HHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC
Q 039792 618 ETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG 697 (819)
Q Consensus 618 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 697 (819)
+++++|. +.|+..+|++|+.+|...|+++.|.
T Consensus 483 ~~~~~~~----------------------------------~~p~~~~~~~Ll~a~~~~g~~~~a~-------------- 514 (697)
T PLN03081 483 AMIRRAP----------------------------------FKPTVNMWAALLTACRIHKNLELGR-------------- 514 (697)
T ss_pred HHHHHCC----------------------------------CCCCHHHHHHHHHHHHHcCCcHHHH--------------
Confidence 7655443 5666666777777777666554443
Q ss_pred chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECC
Q 039792 698 MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNN 777 (819)
Q Consensus 698 ~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~ 777 (819)
.+++++++++|++...|+.|+++|++.|+|++|.+++++|+++|++|.||+|||++++
T Consensus 515 ----------------------~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 515 ----------------------LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred ----------------------HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 3445556778888999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCcCCCCCC
Q 039792 778 EVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNTSAL 818 (819)
Q Consensus 778 ~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~ 818 (819)
++|.|++||++||+.++||++|++|..+|++.||+||++.+
T Consensus 573 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~ 613 (697)
T PLN03081 573 QDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENEL 613 (697)
T ss_pred eEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchh
Confidence 99999999999999999999999999999999999998753
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-69 Score=620.46 Aligned_cols=568 Identities=17% Similarity=0.224 Sum_probs=500.0
Q ss_pred CCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeee-----HHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHH
Q 039792 190 DRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVS-----WTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSS 264 (819)
Q Consensus 190 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 264 (819)
.++...|..+++.|++.|++++|.++|++|+.++... ++.++.+|++.|..++|+++|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4567789999999999999999999999998776654 45667789999999999999999974 99999999
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc----CCCcccHHHHHHHHHcCCC
Q 039792 265 VLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE----VKNIISWTTLIGGYMQNSF 340 (819)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 340 (819)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 5899999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHH--cCCCCChhHHhHHhhhhhcCCCHHHHHHHH
Q 039792 341 DREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFK--ANIESDNFVKNSLVDMYAKCDSLTEARKVF 418 (819)
Q Consensus 341 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 418 (819)
+++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|++|.+ .|+.||..+|++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 689999999999999999999999999999
Q ss_pred HhcCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc
Q 039792 419 DVMAD----RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL 494 (819)
Q Consensus 419 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 494 (819)
+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99986 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcC----CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMN----QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 58999999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA----KCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMK 646 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 646 (819)
+|++.|+++.|.+++++|.+.|+.||..+|++|+.++. +++...++...|+.+...+...|+ ++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HH
Confidence 99999999999999999999999999999999998743 444444444444443333444444 56
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHH
Q 039792 647 ALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAI 726 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~ 726 (819)
|+.+|++|++.|+.||.+||+.++.++...+..+.+..+++.|...+..|+..+|+++|+.+++.
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--------------- 895 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--------------- 895 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC---------------
Confidence 99999999999999999999999988888889998888888887777888888888888855421
Q ss_pred ccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 039792 727 SIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHI 806 (819)
Q Consensus 727 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~ 806 (819)
.++|..++++|.+.|+.++........--++|.|-.| -.--.+...|..|...+
T Consensus 896 ----------------------~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~----aa~~~l~~wl~~~~~~~ 949 (1060)
T PLN03218 896 ----------------------DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVF----AAEVYLLTILKGLKHRL 949 (1060)
T ss_pred ----------------------hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcch----hHHHHHHHHHHHHHHHH
Confidence 2579999999999999877542111222344444433 11122344566666665
Q ss_pred HhcCCcCC
Q 039792 807 KGVGYVPN 814 (819)
Q Consensus 807 ~~~~~~~~ 814 (819)
...-..|.
T Consensus 950 ~~g~~lp~ 957 (1060)
T PLN03218 950 AAGAKLPN 957 (1060)
T ss_pred hccCcCCc
Confidence 43325554
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-70 Score=626.85 Aligned_cols=473 Identities=25% Similarity=0.355 Sum_probs=423.7
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcc
Q 039792 115 ERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVY 194 (819)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 194 (819)
.++.++|+.+|.+|++.|++.+|+++|+.|....+..||..||++++.+|++.++.+ .+.++|..+.+.|+.||+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~----~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIR----CVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH----HHHHHHHHHHHhCCCcchH
Confidence 467889999999999999999999999999544568899999999999999999865 7899999999999999999
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQF 274 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 274 (819)
+||.|+++|+++|++++|.++|++|+.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 039792 275 VGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRS 354 (819)
Q Consensus 275 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (819)
.+.+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHH
Q 039792 355 GWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIE 434 (819)
Q Consensus 355 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 434 (819)
|+.||..||++++.+|++.|+++.|.++|+.|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHH-hCCccchhhHHHHHHHHHhcCChH
Q 039792 435 GYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK-YGVFLDVFAGSALIDAYSKCFSNK 513 (819)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~ 513 (819)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++++.|.+ .|+.|+..+|++++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 699999998888888888888888
Q ss_pred HHHHHHHhcC-CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 039792 514 DARLVFDEMN-QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKL 591 (819)
Q Consensus 514 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 591 (819)
+|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.| +..+|..+++.|++.|++++|.++++.|.+.
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 8877777664 24555555555555555555555555555432 223 2334444444455555555555555544444
Q ss_pred CC
Q 039792 592 GL 593 (819)
Q Consensus 592 ~~ 593 (819)
|+
T Consensus 558 g~ 559 (697)
T PLN03081 558 GL 559 (697)
T ss_pred CC
Confidence 44
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-69 Score=621.02 Aligned_cols=528 Identities=17% Similarity=0.213 Sum_probs=470.1
Q ss_pred CCCChhhhhHHHHHHHcCCChhhHHHHHhccCCCCcc-----hHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccH
Q 039792 83 LQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLV-----SWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYIL 157 (819)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 157 (819)
-.++...|..+++.|++.|++++|+++|++|++++.+ .++.++.+|++.|..++|+.+|+.| . .||..+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-~----~pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-R----NPTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc-C----CCCHHHH
Confidence 3467888999999999999999999999999886655 4556777899999999999999999 3 2999999
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCC----CCCeeeHHHHHHH
Q 039792 158 SSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLM----VKTAVSWTTIITG 233 (819)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~ 233 (819)
+.+|++|++.++++ .+.++++.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++|++||.+
T Consensus 441 n~LL~a~~k~g~~e----~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 441 NMLMSVCASSQDID----GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHhCcCHH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999976 778899999999999999999999999999999999999999996 6899999999999
Q ss_pred HHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHH--hCCCCchhHHHHHHHHhHhCCChH
Q 039792 234 YVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLR--RGMGMDVSVINVLMDFYSKCGRVK 311 (819)
Q Consensus 234 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~ 311 (819)
|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999987 689999999999999999999999
Q ss_pred HHHHHHhcccC----CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHH
Q 039792 312 MARRLFDEIEV----KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSF 387 (819)
Q Consensus 312 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 387 (819)
+|.++|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999985 46689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 039792 388 KANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMA----DRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLT 463 (819)
Q Consensus 388 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 463 (819)
+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..|
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999995 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHH----hcCChHHHHHHHHhcCCCCeeehhhhHHHHHh
Q 039792 464 FVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYS----KCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQ 539 (819)
Q Consensus 464 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 539 (819)
|+.++.+|++.|+++.|.+++..|.+.|+.||..+|++++.+|. +++...++...|+.+...+...|
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w--------- 827 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW--------- 827 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch---------
Confidence 99999999999999999999999999999999999999997743 33333333333333322233333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 039792 540 QLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 540 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
.++|+.+|++|.+.|+.||..||+.+|.++.+.+..+.+..+++.+...+..|+..+|++||+
T Consensus 828 ---~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~-------------- 890 (1060)
T PLN03218 828 ---TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVD-------------- 890 (1060)
T ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHH--------------
Confidence 356999999999999999999999999777677777766666666655555555555555554
Q ss_pred HhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 620 FGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 620 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
++.+. .++|+.+|++|.+.|+.|+..
T Consensus 891 -----------------g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 891 -----------------GFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred -----------------hhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 44221 367999999999999999875
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.7e-34 Score=344.11 Aligned_cols=669 Identities=13% Similarity=0.029 Sum_probs=315.8
Q ss_pred CChhhHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC---CCcchHHHHHHHHHcCCChhhHHHHHH
Q 039792 66 KRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE---RNLVSWSSLVSMYTKKGYGEEALMVFI 142 (819)
Q Consensus 66 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 142 (819)
+++..+..++..+.... +.+...+..+...+...|++++|.+.|+.... .+..+|..++..+...|++++|...++
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 251 (899)
T TIGR02917 173 NRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHAD 251 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67777777777766543 44566777777778888888888888877643 345567777777788888888888877
Q ss_pred HHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCC-cchhhHHHHHHHhcCChhHHHHHHhcCCC
Q 039792 143 GFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRD-VYVGTSLMNLYAKNGSVDDAKFVFDGLMV 221 (819)
Q Consensus 143 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~f~~~~~ 221 (819)
.+.....-.| .........+...|+.++|....+.. .+.+ |+ ...+..+...+.+.|++++|...|+.+..
T Consensus 252 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~----l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 323 (899)
T TIGR02917 252 ALLKKAPNSP--LAHYLKALVDFQKKNYEDARETLQDA----LKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILK 323 (899)
T ss_pred HHHHhCCCCc--hHHHHHHHHHHHhcCHHHHHHHHHHH----HHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7743322111 11111111222334444333222222 1111 11 11222223334444555555555444321
Q ss_pred ---CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHH
Q 039792 222 ---KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVIN 298 (819)
Q Consensus 222 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 298 (819)
.+...+..+...+.+.|++++|+..++.+.... +.+...+..+...+...|++++|.+.++.+.+... .+...+.
T Consensus 324 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 401 (899)
T TIGR02917 324 YAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAART 401 (899)
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 122333444444444455555555544444332 12333444444444444555555544444443321 1233344
Q ss_pred HHHH----------------------------------HhHhCCChHHHHHHHhcccC---CCcccHHHHHHHHHcCCCh
Q 039792 299 VLMD----------------------------------FYSKCGRVKMARRLFDEIEV---KNIISWTTLIGGYMQNSFD 341 (819)
Q Consensus 299 ~li~----------------------------------~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 341 (819)
.+.. .|.+.|++++|..+++.+.. .+..+|+.+...+...|++
T Consensus 402 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCH
Confidence 4444 44444555555444444431 1233444444455555555
Q ss_pred hHHHHHHHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHh
Q 039792 342 REAMKLFTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDV 420 (819)
Q Consensus 342 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (819)
++|.+.|+++.+. .| +...+..+...+...|+++.|.+.++.+.+... .+..++..+...|.+.|+.++|...|++
T Consensus 482 ~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 482 AKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555544432 22 222333334444444555555555554444321 1333444444455555555555555544
Q ss_pred cCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchh
Q 039792 421 MAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVF 497 (819)
Q Consensus 421 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 497 (819)
+.. .+...+..++..|.+.|++++|+.+++++.+. .+.+..++..+...+...|+++.|...+..+.+... .+..
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 636 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSAL 636 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChH
Confidence 432 12334444445555555555555555554432 233344444445555555555555555555444332 1333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN 574 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 574 (819)
.+..+...|.+.|++++|...|+++.+ .+..+|..++..+...|++++|..+++.+.... +++...+..+...+..
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHH
Confidence 444445555555555555555554432 123344445555555555555555555554432 2333444444444555
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLF 651 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 651 (819)
.|++++|...+..+.+.++. ..++..++.+|.+.|++++|.+.++++. +.+...++.+...|...|+.++|.+.|
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 55555555555555444322 2334444555555555555555554433 233444455555555555555555555
Q ss_pred HHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccC
Q 039792 652 REMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISID 729 (819)
Q Consensus 652 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~ 729 (819)
+++.+ ..|+ ..++..+...+...|+ ++|+.+++++.. .+-.| ..+..+...+-+.+ +.+.|...++++++.+
T Consensus 794 ~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 794 RTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP--AILDTLGWLLVEKG-EADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc--HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 55554 2332 2344455555555555 445555555544 11111 12222222222111 4455555555555555
Q ss_pred CCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 730 PMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 730 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
|.++.++..++.+|...|++++|.+++++|
T Consensus 868 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 868 PEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555555555555554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-33 Score=339.71 Aligned_cols=679 Identities=11% Similarity=0.007 Sum_probs=492.4
Q ss_pred CChhhHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC---CCcchHHHHHHHHHcCCChhhHHHHHH
Q 039792 66 KRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE---RNLVSWSSLVSMYTKKGYGEEALMVFI 142 (819)
Q Consensus 66 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 142 (819)
+.+..+...+..+..... .+...+..+...+...|++++|.++++++.. ++...|..+...+...|++++|...|+
T Consensus 139 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 139 GQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred CCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 788999999998876543 4566788899999999999999999998754 355688888999999999999999999
Q ss_pred HHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCC
Q 039792 143 GFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVK 222 (819)
Q Consensus 143 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~ 222 (819)
+.+... +.+..++..+...+...|+.++|......+ .+.. +.+..........+.+.|++++|...|+++...
T Consensus 218 ~a~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 218 KAIALR--PNNPAVLLALATILIEAGEFEEAEKHADAL----LKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 984432 345567777888888889887555444444 3332 233344444455667889999999999987443
Q ss_pred C---eeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHH
Q 039792 223 T---AVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINV 299 (819)
Q Consensus 223 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 299 (819)
+ ...+..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...+..+.+.. +.+...+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 368 (899)
T TIGR02917 291 APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSL 368 (899)
T ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3 2344455667888999999999999998753 3355667778888999999999999999998765 346778899
Q ss_pred HHHHhHhCCChHHHHHHHhcccC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC---------------------
Q 039792 300 LMDFYSKCGRVKMARRLFDEIEV---KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSG--------------------- 355 (819)
Q Consensus 300 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------- 355 (819)
+...|.+.|++++|.+.|+++.. .+...|..+...+...|++++|++.|+.+.+..
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHH
Confidence 99999999999999999998753 233445556666666666666666666655432
Q ss_pred ------------CCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC
Q 039792 356 ------------WKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD 423 (819)
Q Consensus 356 ------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (819)
.+++..++..+...+...|+++.|.+.+..+.+... .+...+..+...+...|++++|.+.|+++.+
T Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122344455555555555666666666665554321 2333445555566666666666666665543
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHH
Q 039792 424 ---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGS 500 (819)
Q Consensus 424 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 500 (819)
.+..++..+...+.+.|+.++|...|+++...+ +.+...+..+...+...|+.+.+..+++.+.+.. ..+...+.
T Consensus 528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 234556666666666667777777766665432 3344555666667777777777777777766543 33556677
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS 577 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 577 (819)
.+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|+
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 777777788888888887777653 245567777777777888888888888777642 3346677777777788888
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
++.|..+++.+.+.++. +...+..+...|.+.|++++|.+.|+.+. .|+..++..++..+...|+.++|.+.++++.
T Consensus 685 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888887776643 66677778888888888888888888765 4555677778888888888888888888888
Q ss_pred HcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCch
Q 039792 656 IEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSG 734 (819)
Q Consensus 656 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~ 734 (819)
+ ..|+ ...+..+...|...|++++|.++|+++.+.. .++...+..+...+...+ + +.|...+++++++.|+++.
T Consensus 764 ~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~-~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 764 K--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELK-D-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred H--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC-c-HHHHHHHHHHHhhCCCCcH
Confidence 7 4554 4577778888888999999999999988732 235566777777776653 5 7799999999999999999
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 039792 735 SYTLLSNTFACNSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 735 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 764 (819)
.+..++.+|...|++++|.+.++++.+.+.
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999987653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=3.8e-22 Score=241.41 Aligned_cols=636 Identities=11% Similarity=0.002 Sum_probs=407.0
Q ss_pred HHHHHHcCCChhhHHHHHhccCC--C-CcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCC
Q 039792 93 LLRNYSKANDLDGARKLFDTMSE--R-NLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGG 169 (819)
Q Consensus 93 ll~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 169 (819)
.++.+...++.+.|++.++++.. | |+..+..++..+.+.|+.++|...+++..+. .|+...+..+....
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~---~P~~~~~~~~~~~~----- 105 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL---APDSNAYRSSRTTM----- 105 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCChHHHHHHHHH-----
Confidence 44566777888888888887643 3 5567788888888999999999999887332 24332221111000
Q ss_pred CCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHH----HHHHHHhcCCchhHHH
Q 039792 170 GGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTT----IITGYVKSGRSDLSLN 245 (819)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~----li~~~~~~g~~~~A~~ 245 (819)
.. ..|+......+...+.+.|++++|...|+.+...+...... ........|+.++|++
T Consensus 106 ----------------~~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~ 168 (1157)
T PRK11447 106 ----------------LL-STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAIN 168 (1157)
T ss_pred ----------------Hh-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHH
Confidence 00 12233333444555666677777777776654332221110 0111122466677777
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC----------------Cc---hhHHHHHHHHhHh
Q 039792 246 LFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMG----------------MD---VSVINVLMDFYSK 306 (819)
Q Consensus 246 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----------------~~---~~~~~~li~~~~~ 306 (819)
.|+++.+.. +-+......+-..+...|+.++|.+.++.+.+.... ++ ...+...+..+-.
T Consensus 169 ~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~ 247 (1157)
T PRK11447 169 QLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSD 247 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCC
Confidence 777766542 123334455556666667777777766666543210 00 1111112222222
Q ss_pred CCChHHHHHHHhcccC--CCcc-cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHH
Q 039792 307 CGRVKMARRLFDEIEV--KNII-SWTTLIGGYMQNSFDREAMKLFTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQV 382 (819)
Q Consensus 307 ~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~ 382 (819)
....+.|...+..... .|.. ........+...|++++|+..|++..+. .| +...+..+...+.+.|+.++|...
T Consensus 248 ~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred chHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2234445555544321 1111 1122344566778888888888887763 45 455666677777788888888888
Q ss_pred HHHHHHcCCCCCh-hHH------------hHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHH
Q 039792 383 HAYSFKANIESDN-FVK------------NSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEAL 446 (819)
Q Consensus 383 ~~~~~~~g~~~~~-~~~------------~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 446 (819)
++.+.+....... ..+ ..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8887765433211 111 1223456778888888888888764 24456777788888888888888
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCc--------cchhhHHHHHHHHHhcCChHHHHHH
Q 039792 447 DLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVF--------LDVFAGSALIDAYSKCFSNKDARLV 518 (819)
Q Consensus 447 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 518 (819)
+.|++..+.. +.+...+..+...+. .++.++|..+++.+...... .....+..+...+...|+.++|.+.
T Consensus 406 ~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~ 483 (1157)
T PRK11447 406 RYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL 483 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 8888887542 223344444555443 45667777776654322110 1122355677788899999999999
Q ss_pred HHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 039792 519 FDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF 595 (819)
Q Consensus 519 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 595 (819)
|++..+ | +...+..+...|.+.|++++|...|++..+.. +.+...+..+...+...++.++|...++.+......+
T Consensus 484 ~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 484 QRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 998865 3 34566778888999999999999999988642 2234444444445677889999999888764432222
Q ss_pred ch---------hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hh
Q 039792 596 DS---------FITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-IT 665 (819)
Q Consensus 596 ~~---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 665 (819)
+. ..+..+.+.+...|+.++|.++++. .+.+...+..+...+.+.|++++|++.|++.++ ..|+. ..
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a 639 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADA 639 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 21 1223456788999999999999984 344666778899999999999999999999998 67865 67
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCccCc-hHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc------hhHHH
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGM-EHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS------GSYTL 738 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~------~~~~~ 738 (819)
+..+...+...|++++|.+.++...+ ..|+. ..+..+...+-+.+ +.+.|...++++++..|+++ ..+..
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~ 716 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALG-DTAAAQRTFNRLIPQAKSQPPSMESALVLRD 716 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHhhhCccCCcchhhHHHHHH
Confidence 88999999999999999999998775 23332 23333444443322 88999999999999887654 36667
Q ss_pred HHHHHHhCCCchHHHHHHHHHHh-CCCc
Q 039792 739 LSNTFACNSMWADAKQVRKKMDL-DGLM 765 (819)
Q Consensus 739 l~~~y~~~g~~~~a~~~~~~m~~-~g~~ 765 (819)
++.+|...|++++|.+.+++... .|+.
T Consensus 717 ~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 717 AARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 89999999999999999888753 3453
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=9.4e-22 Score=238.02 Aligned_cols=609 Identities=13% Similarity=0.084 Sum_probs=393.8
Q ss_pred CChhhHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC--CCcch-H----------------HHHHH
Q 039792 66 KRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE--RNLVS-W----------------SSLVS 126 (819)
Q Consensus 66 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~--~~~~~-~----------------~~li~ 126 (819)
++.+.+++...++.... +.|+.++..+...+.+.|+.++|.+.+++..+ |+... + -.+..
T Consensus 42 ~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ 120 (1157)
T PRK11447 42 HREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQAR 120 (1157)
T ss_pred CChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHH
Confidence 77888888888776543 33677888899999999999999999999865 43322 1 22334
Q ss_pred HHHcCCChhhHHHHHHHHHHcCCCCCCcccHHH-HHHH-HhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHH
Q 039792 127 MYTKKGYGEEALMVFIGFLKVGNGRPDDYILSS-VICA-CTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYA 204 (819)
Q Consensus 127 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~-ll~~-~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~ 204 (819)
.+.+.|++++|+..|+..+.. .+|+. .+.. .... ....++.++|.+..++ +.+.. +.+...+..+...+.
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~--~p~~~-~la~~y~~~~~~~~g~~~~A~~~L~~----ll~~~-P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNG--APPEL-DLAVEYWRLVAKLPAQRPEAINQLQR----LNADY-PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccC--CCCCh-HHHHHHHHHHhhCCccHHHHHHHHHH----HHHhC-CCCHHHHHHHHHHHH
Confidence 688999999999999998432 22332 2111 1222 2234555544333333 33332 445667888899999
Q ss_pred hcCChhHHHHHHhcCCCCCee------eH-----------------HHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhh
Q 039792 205 KNGSVDDAKFVFDGLMVKTAV------SW-----------------TTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYL 261 (819)
Q Consensus 205 ~~g~~~~A~~~f~~~~~~~~~------~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 261 (819)
+.|+.++|...|+++...... .| ...+..+-.....+.|...+.++......|+...
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 999999999999987432211 11 1111111111223344455544433322232211
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC--CCc---ccHHHH-----
Q 039792 262 LSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV--KNI---ISWTTL----- 331 (819)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l----- 331 (819)
...-..+...|++++|...++..++... .+..++..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 273 -~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 273 -RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 1223445667888888888888887642 3667788888888888888888888887653 221 122222
Q ss_pred -------HHHHHcCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhh
Q 039792 332 -------IGGYMQNSFDREAMKLFTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVD 403 (819)
Q Consensus 332 -------i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 403 (819)
...+.+.|++++|++.|++..+. .| +...+..+-..+...|++++|.+.++.+.+.... +...+..+..
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~ 427 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 23466788888888888888874 44 3445556667778888888888888888875422 3445556666
Q ss_pred hhhcCCCHHHHHHHHHhcCCCC------------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 039792 404 MYAKCDSLTEARKVFDVMADRN------------VVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLS 471 (819)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 471 (819)
.|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 664 456788888887765321 1234455667778888888888888877642 22345566677778
Q ss_pred hccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCC----e---------eehhhhHHHHH
Q 039792 472 SSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRD----I---------VVWNAMLLGYT 538 (819)
Q Consensus 472 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~ 538 (819)
...|+.++|...++.+.+.... +...+..+...+...++.++|...++.+.... . ..+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 8888888888888888765433 33333444455667788888888888775421 0 01123445677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 039792 539 QQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYE 618 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 618 (819)
..|+.++|..+++. .+++...+..+...+.+.|++++|...++.+++..+. +...+..++..|...|+.++|.+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 77888888887762 2445556666777777888888888888888877654 66777778888888888888888
Q ss_pred HHhcCC--C-CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-C----CchhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 619 TFGSTT--W-KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLE-P----NYITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 619 ~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
.++... . .+...+..+...+...|++++|.+++++++...-. | +...+..+...+...|++++|...|++..
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887665 2 34556666777777888888888888887763211 1 11244555667777888888888888776
Q ss_pred h-cCCccC
Q 039792 691 G-FGIEPG 697 (819)
Q Consensus 691 ~-~g~~p~ 697 (819)
. .|+.|.
T Consensus 739 ~~~~~~~~ 746 (1157)
T PRK11447 739 VASGITPT 746 (1157)
T ss_pred hhcCCCCC
Confidence 5 555543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.8e-19 Score=207.75 Aligned_cols=624 Identities=13% Similarity=0.038 Sum_probs=422.2
Q ss_pred HcCCChhhHHHHHhccCC--C-CcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCc
Q 039792 98 SKANDLDGARKLFDTMSE--R-NLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGG 174 (819)
Q Consensus 98 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 174 (819)
...|++++|...|+...+ | +..++..|...|.+.|+.++|+..+++.+.. .|+...|..++..+ ++..+|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhHH
Confidence 345999999999998764 4 3567888999999999999999999987432 45555555555333 6666665
Q ss_pred hhHHHHHHHHHHhCCCCCcchhhHHHHH--------HHhcCChhHHHHHHhcCCCCC--eeeHH-HHHHHHHhcCCchhH
Q 039792 175 NVGEQMHSFVIKSGFDRDVYVGTSLMNL--------YAKNGSVDDAKFVFDGLMVKT--AVSWT-TIITGYVKSGRSDLS 243 (819)
Q Consensus 175 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~g~~~~A~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A 243 (819)
...+++... .+.+..++..+... |.+.+...+++. .+...++ ..... .+...|.+.|++++|
T Consensus 129 ~~ye~l~~~-----~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 129 TTVEELLAQ-----QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHh-----CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 555555332 13345566666665 777766677776 3333333 33333 347889999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhc-cCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC
Q 039792 244 LNLFNQMRETDVVHDKYLLSSVLSACSM-LQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV 322 (819)
Q Consensus 244 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 322 (819)
++++.++.+.+... ..-...+-.++.. .++ +.+..++.. .+..++.++..+.+.|.+.|+.++|.+++++++.
T Consensus 202 i~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999886433 3335555556665 355 666666442 3446888899999999999999999999999873
Q ss_pred -----CCcccHHHHHHHHHcCCChh-HHHHHHHHHHHCCCCCCcc-hHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCCh
Q 039792 323 -----KNIISWTTLIGGYMQNSFDR-EAMKLFTEMTRSGWKPDDF-ACSSVLTSCGSVEALEQGRQVHAYSFKANIESDN 395 (819)
Q Consensus 323 -----~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 395 (819)
|+..+| +.-+.+.+... .|..-|.+ ...++.. ....++.-+.+.++++.++++.. +.|..
T Consensus 276 ~~~~~~~~~~~---~~~l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 342 (987)
T PRK09782 276 LFTTDAQEKSW---LYLLSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPAN 342 (987)
T ss_pred cccCCCccHHH---HHHHHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcc
Confidence 222333 33344444432 11111111 0111111 11223555667777776665522 34433
Q ss_pred hHHhHHhhh-hh-cCCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhHHHHHH
Q 039792 396 FVKNSLVDM-YA-KCDSLTEARKVFDVMADR---NVVSYNAMIEGYSKEEKLSEALDLFHEMRVG--FVPPGLLTFVSLL 468 (819)
Q Consensus 396 ~~~~~li~~-~~-~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll 468 (819)
.. ..+.. +. ..+...++...+..|-.. +.....-+.--..+.|+.++|..+|+..... ...++......++
T Consensus 343 ~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 343 EM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred hH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 32 22222 22 335666666666666543 3333333344456889999999999998652 2334445555888
Q ss_pred HHhhccCchH---hHHHH------------HHHHHH-----------hCC-cc--chhhHHHHHHHHHhcCChHHHHHHH
Q 039792 469 GLSSSVFSLE---SSKQI------------HGLIIK-----------YGV-FL--DVFAGSALIDAYSKCFSNKDARLVF 519 (819)
Q Consensus 469 ~~~~~~~~~~---~a~~i------------~~~~~~-----------~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~ 519 (819)
..+...+.+. .+..+ ...+.. .+. .+ +...+..+..++.. ++.++|...|
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 8898888744 44444 221111 111 12 45666777777776 7888899978
Q ss_pred HhcCCCCeeehhhhHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 039792 520 DEMNQRDIVVWNAMLLGY--TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDS 597 (819)
Q Consensus 520 ~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 597 (819)
.+.....+..++.+..++ ...|++++|...|+++... +|+...+..+..++.+.|+.+.|...++..++..+. +.
T Consensus 500 ~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~ 576 (987)
T PRK09782 500 LQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DN 576 (987)
T ss_pred HHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cH
Confidence 776653333455554444 5899999999999997653 455566667777888999999999999999887643 33
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACS 674 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 674 (819)
..+..+.....+.|++++|...+++.. .|+...|..+...+.+.|+.++|+..|++..+ +.|+. ..+..+..++.
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 344444444556699999999999877 57788899999999999999999999999998 78976 46777777999
Q ss_pred ccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHH
Q 039792 675 HAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAK 753 (819)
Q Consensus 675 ~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 753 (819)
..|+.++|+..+++..+ ..|+ ...+..+..++.+.+ +.+.|+..++++++++|+++.+....+++.....+++.|.
T Consensus 655 ~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lG-d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 655 DSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLD-DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999987 2333 233444444444433 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 039792 754 QVRKKMDLDGL 764 (819)
Q Consensus 754 ~~~~~m~~~g~ 764 (819)
+-+++.-.-.+
T Consensus 732 ~~~~r~~~~~~ 742 (987)
T PRK09782 732 EEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhhcCc
Confidence 98876654433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2.2e-18 Score=198.81 Aligned_cols=645 Identities=7% Similarity=-0.101 Sum_probs=431.9
Q ss_pred CChhhHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC--CCcchHHHHHHHHHcCCChhhHHHHHHH
Q 039792 66 KRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE--RNLVSWSSLVSMYTKKGYGEEALMVFIG 143 (819)
Q Consensus 66 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 143 (819)
++...+...+.+.++.... +..++..|...|.+.|+.++|+..+++..+ |+-..|..++..+ ++..+|..+|++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 6778888888888776533 478889999999999999999999999865 4334444444333 888999999999
Q ss_pred HHHcCCCCCCcccHHHHH------HHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHH-HHHHHhcCChhHHHHHH
Q 039792 144 FLKVGNGRPDDYILSSVI------CACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSL-MNLYAKNGSVDDAKFVF 216 (819)
Q Consensus 144 m~~~~~~~p~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~g~~~~A~~~f 216 (819)
++....-.++.....+.+ -.+.+. + .+..... .......|+..+.... ...|.+.|++++|...+
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---e----qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQL---P----VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhH---H----HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 965543333333222222 113333 2 2222222 2222333445555555 88999999999999999
Q ss_pred hcCCCCCe---eeHHHHHHHHHhc-CCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC-
Q 039792 217 DGLMVKTA---VSWTTIITGYVKS-GRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMG- 291 (819)
Q Consensus 217 ~~~~~~~~---~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~- 291 (819)
.++.+.++ .-+..|-..|.+. ++ +++..+++. .++-|......+...+...|+.+.|.+++..+...-..
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 98855433 3355666778873 66 777777553 34467788889999999999999999999886554322
Q ss_pred CchhHHHHHHHHhHhCCChH-HHHHHHhcccCCC-cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 039792 292 MDVSVINVLMDFYSKCGRVK-MARRLFDEIEVKN-IISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTS 369 (819)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 369 (819)
|....+ +-...+.+... .|..-|.+-..++ ....-.++..+.+++.++.+.++. .+.|.......-..+
T Consensus 281 ~~~~~~---~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 281 AQEKSW---LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAV 351 (987)
T ss_pred CccHHH---HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhh
Confidence 333333 23345555543 1111111100111 112233477788899998666552 255544432111222
Q ss_pred hcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--CC----cchHHHHHHHHHhcCC--
Q 039792 370 CGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--RN----VVSYNAMIEGYSKEEK-- 441 (819)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~-- 441 (819)
....+...++.+....+.+... -+....--+.-...+.|+.++|.++|+..-. ++ ...-+-++..|.+.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 2334666667777777766522 1333334444455688999999999998765 22 2244577888999888
Q ss_pred -hhHHHHHHHHH------------HhCC-----------C-CC--ChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc
Q 039792 442 -LSEALDLFHEM------------RVGF-----------V-PP--GLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL 494 (819)
Q Consensus 442 -~~~A~~~~~~m------------~~~g-----------~-~p--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 494 (819)
..++..+-..+ .... . ++ +...+..+-.++.. ++.++|...+....... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 56666663322 2210 1 12 33344444444444 78888888777776654 4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCC--CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQ--RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAA 572 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 572 (819)
+......+...+...|++++|...|+++.. ++...+..+...+.+.|++++|...|++..+.. +++...+..+....
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l 586 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQR 586 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 443333445555789999999999998764 444556777788899999999999999998754 23333344444455
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
...|++++|...++..++..+ +...+..+..++.+.|+.++|...|++.. +.+...++.+...+...|+.++|++
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 667999999999999998765 57788999999999999999999999877 4466788899999999999999999
Q ss_pred HHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCch-HHHHHHHHhhcccchhhhHHHHHHHHHc
Q 039792 650 LFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGME-HYASVVSLLGRNVWNVELGRYAAEMAIS 727 (819)
Q Consensus 650 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~-~y~~li~~l~r~~w~~~~a~~~~~~~~~ 727 (819)
.|++..+ ..|+. ..+..+..++...|++++|...+++..+ ..|+.. ..-..-..+.+. .+++.+....++...
T Consensus 665 ~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~-~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 665 MLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQR-FNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHH-HHHHHHHHHHHHHhh
Confidence 9999998 78875 5788999999999999999999999987 335431 111112222221 278899999999999
Q ss_pred cCCCCchhHHHHHHHHHhCCCc
Q 039792 728 IDPMDSGSYTLLSNTFACNSMW 749 (819)
Q Consensus 728 ~~p~~~~~~~~l~~~y~~~g~~ 749 (819)
+.|... +....+.++...+++
T Consensus 740 ~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 740 FSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred cCccch-hccccchHhhhcccc
Confidence 999765 555566666555554
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=6.2e-18 Score=172.12 Aligned_cols=445 Identities=15% Similarity=0.176 Sum_probs=308.8
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhC
Q 039792 228 TTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKC 307 (819)
Q Consensus 228 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 307 (819)
..|..-..+.|++++|.+.-...-..+ ..+..+...+-..+....+++...+--...++.. +.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 334455567788888877655443322 1111122222222333333332222111111111 11234455555555555
Q ss_pred CChHHHHHHHhcccC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHH
Q 039792 308 GRVKMARRLFDEIEV---KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHA 384 (819)
Q Consensus 308 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 384 (819)
|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+....
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca--------------------- 186 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCA--------------------- 186 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhh---------------------
Confidence 555555555555442 1234555555555555555555555555544 23332221
Q ss_pred HHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 039792 385 YSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--RN-VVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGL 461 (819)
Q Consensus 385 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 461 (819)
.+.+-...-..|++++|...+.+..+ |. .+.|+.|...+-.+|+...|+..|++..+- .|+
T Consensus 187 -------------~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~- 250 (966)
T KOG4626|consen 187 -------------RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN- 250 (966)
T ss_pred -------------hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc-
Confidence 12233333445777777777766543 33 467888888888899999999888887642 332
Q ss_pred hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHH
Q 039792 462 LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYT 538 (819)
Q Consensus 462 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 538 (819)
-...|-.|...|...+.++.|...+.+... | ..+.+..|...|-
T Consensus 251 ---------------------------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 251 ---------------------------------FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred ---------------------------------chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 122344566667777777777777776543 3 4567777888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 539 QQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
.+|..+-|+..|++..+ +.|+ ...|+.+..++...|++.+|...+.......+. .....+.|...|...|.+++|.
T Consensus 298 eqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred ccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHH
Confidence 99999999999999887 4665 467999999999999999999999999998765 6777888999999999999999
Q ss_pred HHHhcCC--CCC-hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 039792 618 ETFGSTT--WKD-VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFG 693 (819)
Q Consensus 618 ~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 693 (819)
.+|.... .|+ ....|.|...|.++|+.++|+..|++.+. ++|+- ..|+.+...|-..|+++.|.+.+.+.+.
T Consensus 375 ~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~-- 450 (966)
T KOG4626|consen 375 RLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ-- 450 (966)
T ss_pred HHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--
Confidence 9999876 333 45789999999999999999999999998 99986 6899999999999999999999988876
Q ss_pred CccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHH
Q 039792 694 IEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQ 754 (819)
Q Consensus 694 ~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 754 (819)
+.|. .+..+.+...+..++ |+..|...++.++++.|+.+.+|-.|+-.+---.+|.+-.+
T Consensus 451 ~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred cCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH
Confidence 4565 456677778887766 99999999999999999999999999988888888887433
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=2e-17 Score=178.67 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=146.5
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHH
Q 039792 531 NAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFD----SFITSALIDM 606 (819)
Q Consensus 531 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~ 606 (819)
..+...|.+.|++++|..+|+++.+. .+++..++..+...+.+.|++++|.+.++.+.+.+..+. ...+..+...
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34444555555555555555555443 123344555555555555555555555555555443221 1123445556
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIED 681 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 681 (819)
+.+.|++++|.+.|+++. +.+...+..+...|.+.|++++|+++|+++.+ ..|+. .++..+..+|...|++++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE--QDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HChhhHHHHHHHHHHHHHHcCCHHH
Confidence 666677777777666654 22344566666777777777777777777776 34442 456667777777777777
Q ss_pred HHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh---CCCchHHHHHHHH
Q 039792 682 GLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC---NSMWADAKQVRKK 758 (819)
Q Consensus 682 a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~ 758 (819)
|...++++.+. .|+...+..++..+.+.+ +.+.|...++++++..|++.. +..+...+.. .|+.+++..++++
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g-~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQE-GPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHH
Confidence 77777777663 345455555666665543 667777777888888887764 4444444443 5699999999999
Q ss_pred HHhCCCcCCCceeEE
Q 039792 759 MDLDGLMKEAGRSWI 773 (819)
Q Consensus 759 m~~~g~~~~~g~s~i 773 (819)
|.+++++++|.+...
T Consensus 344 ~~~~~~~~~p~~~c~ 358 (389)
T PRK11788 344 LVGEQLKRKPRYRCR 358 (389)
T ss_pred HHHHHHhCCCCEECC
Confidence 999999999986543
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=1.7e-17 Score=179.28 Aligned_cols=295 Identities=13% Similarity=0.086 Sum_probs=126.4
Q ss_pred cCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCC-C------cchHHHHHHHHHhcCChh
Q 039792 371 GSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADR-N------VVSYNAMIEGYSKEEKLS 443 (819)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~------~~~~~~li~~~~~~g~~~ 443 (819)
...|+++.|...+..+.+.+. .+..++..+...|.+.|++++|..+++.+... + ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 344555555555555555321 12334455555555555555555555554331 1 123444455555555555
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcC
Q 039792 444 EALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMN 523 (819)
Q Consensus 444 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 523 (819)
+|+.+|+++.+. .+++..++..+...+...|++++|...+..+.+.+..+.....
T Consensus 125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------ 179 (389)
T PRK11788 125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------------ 179 (389)
T ss_pred HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 555555555432 1223334444444444444444444444444433222110000
Q ss_pred CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 039792 524 QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSAL 603 (819)
Q Consensus 524 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 603 (819)
...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.++.....+++.+
T Consensus 180 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 180 ---AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred ---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 0012223333444444444444444444321 112233333444444444444444444444443322222334444
Q ss_pred HHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc---cCC
Q 039792 604 IDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH---AGL 678 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~ 678 (819)
+.+|.+.|++++|.+.++++. .|+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCcc
Confidence 444444444444444444433 23333334444444445555555555554444 34444444444443332 234
Q ss_pred HHHHHHHHHHHHhcCCccC
Q 039792 679 IEDGLDHFQSMAGFGIEPG 697 (819)
Q Consensus 679 ~~~a~~~~~~m~~~g~~p~ 697 (819)
.+++..++++|.+.++.|+
T Consensus 334 ~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 334 AKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred chhHHHHHHHHHHHHHhCC
Confidence 4445555554444333333
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=2.3e-16 Score=160.83 Aligned_cols=417 Identities=15% Similarity=0.112 Sum_probs=318.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH-HhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCC
Q 039792 331 LIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLT-SCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCD 409 (819)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 409 (819)
|..-..+.|++++|.+.-...-++ .|+..--..++. .+....+++...+.-....+. ..--..+|+.+.+.+-..|
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 444455667777776654443322 122111111222 233333333333222222222 1223567788888888899
Q ss_pred CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH-hhccCchHhHHHHHH
Q 039792 410 SLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGL-SSSVFSLESSKQIHG 485 (819)
Q Consensus 410 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~i~~ 485 (819)
++++|..+++.+.+ ..+..|..+..++...|+.+.|...|.+-.+ +.|+.....+-+.. ....|.+++|..-+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999988875 3466888899999999999999998888764 46666655444433 344688888888888
Q ss_pred HHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCe---eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 039792 486 LIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDI---VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN- 561 (819)
Q Consensus 486 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 561 (819)
+.++.... -...|+.|...+-..|+...|+.-|++..+-|+ ..|-.|-..|...+.+++|+..|.+... ..|+
T Consensus 209 kAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~ 285 (966)
T KOG4626|consen 209 KAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNH 285 (966)
T ss_pred HHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcc
Confidence 77775543 345677888888999999999999999887443 4777788889999999999999988776 4565
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHH
Q 039792 562 EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTN 638 (819)
Q Consensus 562 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 638 (819)
.+.+..+...|...|.++.|...+++.++..+. -+..|+.|..++-..|++.+|...+.+.. ..-..+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 466777777888999999999999999987654 46789999999999999999999999876 33466889999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhh
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVE 716 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~ 716 (819)
...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++.+. +.|+ ...|+.|-..|...+ +++
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g-~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG-DVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh-hHH
Confidence 999999999999999998 88985 6799999999999999999999999876 6676 345666655554433 889
Q ss_pred hHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 717 LGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 717 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.|.+...+++.+.|.-+.++..|+.+|-.+|+..+|.+-++....
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998765
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.5e-15 Score=172.81 Aligned_cols=248 Identities=12% Similarity=0.047 Sum_probs=199.8
Q ss_pred cCChHHHHHHHHhcCCC------CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHH
Q 039792 509 CFSNKDARLVFDEMNQR------DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLGSLKHG 581 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 581 (819)
.+++++|.+.|+...+. ....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46788888888877642 2346777778888999999999999998874 454 55778888888899999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039792 582 QQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEG 658 (819)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 658 (819)
...++.+++..+. +..++..+...|...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++
T Consensus 385 ~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 385 EEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 9999999887654 67889999999999999999999999876 34567788899999999999999999999988
Q ss_pred CCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHH--HH----HHHhhcccchhhhHHHHHHHHHccCCC
Q 039792 659 LEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYA--SV----VSLLGRNVWNVELGRYAAEMAISIDPM 731 (819)
Q Consensus 659 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~--~l----i~~l~r~~w~~~~a~~~~~~~~~~~p~ 731 (819)
..|+. ..+..+..++...|++++|...|++.....-..+..+.+ .+ ...+...+ +.+.|...++++++++|+
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALIIDPE 540 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCC
Confidence 67864 678888999999999999999999988732111111111 11 11111101 889999999999999999
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 732 DSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 732 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+...+..++.+|...|++++|.+.+++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988754
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=6.8e-15 Score=143.94 Aligned_cols=346 Identities=15% Similarity=0.163 Sum_probs=234.3
Q ss_pred CcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchh
Q 039792 117 NLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVG 196 (819)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~ 196 (819)
.+++-|.|+.. ..+|...++.-+|+.| +..|+..+...-..++...+-.++.+--...-+ .+-.|.+.|- .+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~-~Fv~~~~~~E-~S~~sW 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWE-EFVGMRNFGE-DSTSSW 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHH-HHhhcccccc-cccccc
Confidence 34566777654 4678899999999999 888888777766666665444333221000111 1111223332 222233
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChh
Q 039792 197 TSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVG 276 (819)
Q Consensus 197 ~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 276 (819)
|.|.+.+ -+| +...++..+|..||.|+|+--..+.|.++|.+-.....+.+..+||.+|.+-+- .
T Consensus 191 --------K~G~vAd--L~~-E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~ 255 (625)
T KOG4422|consen 191 --------KSGAVAD--LLF-ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----S 255 (625)
T ss_pred --------ccccHHH--HHH-hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----h
Confidence 4455544 444 445566789999999999999999999999999999899999999999987653 3
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 039792 277 GGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGW 356 (819)
Q Consensus 277 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 356 (819)
.++.+..+|+...+.||.+++|+++....+.|+++.|.+. |++++.+|++-|+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGV 308 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGV 308 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCC
Confidence 4488999999999999999999999999999998877643 4556666666666
Q ss_pred CCCcchHHHHHHHhcCCcchhh-HHHHHHHHHH----cCCCC----ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC----
Q 039792 357 KPDDFACSSVLTSCGSVEALEQ-GRQVHAYSFK----ANIES----DNFVKNSLVDMYAKCDSLTEARKVFDVMAD---- 423 (819)
Q Consensus 357 ~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 423 (819)
.|...+|..+|..+++.++..+ +..++.++.. ..+.| |...+..-++.|.+..+.+-|.++-.-...
T Consensus 309 ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~ 388 (625)
T KOG4422|consen 309 EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW 388 (625)
T ss_pred CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence 6666666666666665555432 3333333332 11221 334445555555566666666555444332
Q ss_pred ----C---CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccch
Q 039792 424 ----R---NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDV 496 (819)
Q Consensus 424 ----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 496 (819)
+ ...-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|.....
T Consensus 389 ~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 389 KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 1 123356677777888888888999999988888889999999999999999999999999888888765554
Q ss_pred hhHHHHHHHHHh
Q 039792 497 FAGSALIDAYSK 508 (819)
Q Consensus 497 ~~~~~li~~~~~ 508 (819)
....-+...+++
T Consensus 469 ~l~eeil~~L~~ 480 (625)
T KOG4422|consen 469 DLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHhc
Confidence 444444444444
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.8e-13 Score=145.38 Aligned_cols=673 Identities=12% Similarity=0.049 Sum_probs=400.1
Q ss_pred hHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC------CCcc-----hHHHHHHHHHcCCC-----
Q 039792 70 CYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE------RNLV-----SWSSLVSMYTKKGY----- 133 (819)
Q Consensus 70 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~------~~~~-----~~~~li~~~~~~g~----- 133 (819)
.+.++..-+...+- ...+|..+...|.+.|..++.+.+++.-.. .|+. .++.+...|+..+.
T Consensus 26 D~~ev~~IL~~e~a--~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 26 DATEVLSILKAEQA--PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred ChHHHHHHHHHhcC--chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555443 346788888999999999999999987651 2222 22333333322221
Q ss_pred ------hhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC
Q 039792 134 ------GEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNG 207 (819)
Q Consensus 134 ------~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 207 (819)
+..|..+|...-.-....+...++.... |-..+... .+.+.+-+..+.+.. ++|+-..-.=.......|
T Consensus 104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~--~l~~~~~~--~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkk 178 (1018)
T KOG2002|consen 104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQRGF--LLLEGDKS--MDDADAQFHFVLKQS-PDNILALLGKARIAYNKK 178 (1018)
T ss_pred chhHHHHHHHHHHhhHHHHhhccCcchhhhhhhh--hhhcCCcc--HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccc
Confidence 1233333333200000111111111111 11112211 112222222222221 222222111112233457
Q ss_pred ChhHHHHHHhcC--CCC----CeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHH----hhccCChhh
Q 039792 208 SVDDAKFVFDGL--MVK----TAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSA----CSMLQFVGG 277 (819)
Q Consensus 208 ~~~~A~~~f~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~----~~~~~~~~~ 277 (819)
++-.|+.+|... ..| |+. -.+--.+.+.|+.+.|+..|.+..+.+ |+.+.-...|.. +.....+..
T Consensus 179 dY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHH
Confidence 888888888874 222 222 112234567888899998888887643 322211111111 112233444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCC----c--ccHHHHHHHHHcCCChhHHHHHHHHH
Q 039792 278 GKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKN----I--ISWTTLIGGYMQNSFDREAMKLFTEM 351 (819)
Q Consensus 278 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~~~~~li~~~~~~g~~~~A~~~~~~m 351 (819)
|.+++...-... ..++.+.+.|.+.|.-.|+++.+..+...+.... + .+|--+.++|-..|++++|...|.+-
T Consensus 255 ~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 255 GVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 555555444432 3467788888888888899998888887776433 1 24667788888899999999988776
Q ss_pred HHCCCCCCcchH--HHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCC----CHHHHHHHHHhcCCC-
Q 039792 352 TRSGWKPDDFAC--SSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCD----SLTEARKVFDVMADR- 424 (819)
Q Consensus 352 ~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~- 424 (819)
.+ ..||.+++ .-+.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+..++
T Consensus 334 ~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 334 LK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred Hc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 65 45655444 345566788888999988888887753 223445556666666654 456777777766653
Q ss_pred --CcchHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHh---CCccc
Q 039792 425 --NVVSYNAMIEGYSKEEKLSEALDLFHEM----RVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY---GVFLD 495 (819)
Q Consensus 425 --~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~---g~~~~ 495 (819)
|...|-.+...+.+.. ...++..|... ...+-.+.....+.+-......|+++.|...+...... ...+|
T Consensus 411 ~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 4556666666555443 33336665543 34455566777888888888888888888888877654 12222
Q ss_pred h------hhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhc-------CCHHHHHHHHHHHHHCCCCCCH
Q 039792 496 V------FAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQ-------LENEEAIKLYLELLLSQQRPNE 562 (819)
Q Consensus 496 ~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-------g~~~~A~~~~~~m~~~g~~p~~ 562 (819)
. .+--.+...+-..++.+.|.+.|..+.+..+. .|++|.+. +...+|...+++.... ..-++
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~----YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np 564 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG----YIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNP 564 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch----hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCc
Confidence 2 12222445555667788888888887753322 23333333 5667788877776643 12233
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHh------------cCCHHHHHHHHhcCC---CC
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGL-DFDSFITSALIDMYAK------------CGSLEDAYETFGSTT---WK 626 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~---~~ 626 (819)
..++.+-..+.+...+..|..-+..+.+.-. .+|+...-+|.+.|.. .+..++|.++|.++. ++
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3333344455556666666665555544222 2466666667665542 245677888888666 45
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVV 705 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li 705 (819)
|...=|-+.-.++..|++.+|..+|.+..+... -+..+|..+..+|...|++..|++.|+...+ +.-.-+.+...+|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 666777788888888999999999999887543 2445788888889999999999999988877 55444555555555
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh-------------------CCCchHHHHHHHHHHhCCCc
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC-------------------NSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-------------------~g~~~~a~~~~~~m~~~g~~ 765 (819)
.++-+++ .+..+...+.++..+.|.|+..-..++-+..+ .+..++|.++|+.|...+-+
T Consensus 724 ra~y~~~-~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 724 RAWYEAG-KLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4443332 67778888888888888888877776655432 35566788888888766543
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.2e-13 Score=147.18 Aligned_cols=540 Identities=14% Similarity=0.051 Sum_probs=372.3
Q ss_pred hhHHHHHHhcCCCCCeeeH-HHHHHHH--HhcCCchhHHHHHHHHHHC--CCCCChhhHHHHHHHhhccCChhhHHHHHH
Q 039792 209 VDDAKFVFDGLMVKTAVSW-TTIITGY--VKSGRSDLSLNLFNQMRET--DVVHDKYLLSSVLSACSMLQFVGGGKQIHA 283 (819)
Q Consensus 209 ~~~A~~~f~~~~~~~~~~~-~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 283 (819)
++.|...|......+..-- -.+..++ ...|++..|+.+|...... ...||.. ..+-.++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 5788888887644332211 2233333 3468999999999996543 2344432 223355578899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHhHhC---CChHHHHHHHhccc---CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC-
Q 039792 284 HVLRRGMGMDVSVINVLMDFYSKC---GRVKMARRLFDEIE---VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGW- 356 (819)
Q Consensus 284 ~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 356 (819)
..++... .++.++-.|--+-... ..+..+..++...- ..|.+..+.|...|.-.|++..++.+...+.....
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8887653 2333333332222222 23455555555443 45778899999999999999999999999887531
Q ss_pred C-CCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--C-CcchHHHH
Q 039792 357 K-PDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--R-NVVSYNAM 432 (819)
Q Consensus 357 ~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~l 432 (819)
. .-...|-.+-+++-..|+++.|...|-+..+..-......+-.|..+|.+.|+++.+...|+.+.+ | +..+...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 1 123457778888999999999999998877654333233445788999999999999999999875 3 34455566
Q ss_pred HHHHHhcC----ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHH----HHhCCccchhhHHHHHH
Q 039792 433 IEGYSKEE----KLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLI----IKYGVFLDVFAGSALID 504 (819)
Q Consensus 433 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~----~~~g~~~~~~~~~~li~ 504 (819)
...|...+ ..++|..++.+..+.- +.|...|..+-..+.... .......+..+ ...+-.+.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66666654 4567777777765542 455666666666555443 33335555444 45666688999999999
Q ss_pred HHHhcCChHHHHHHHHhcCC-------CCee------ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 039792 505 AYSKCFSNKDARLVFDEMNQ-------RDIV------VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFT-FAALIT 570 (819)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~ 570 (819)
.+...|.++.|...|+.... +|.. +--.+...+-..++++.|.+.|...... .|+-+. |.-+.-
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 99999999999999987653 2221 1122445566678999999999999875 566544 333332
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChHhHHHHHHHHHh-----
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-----WKDVACWNSMICTNAH----- 640 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~----- 640 (819)
.....+...+|...+..+....- .++..++.+.+.|.+...+..|.+-|+.+. .+|..+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 23345688889999888887543 367777878889999999988888555433 3466666556654432
Q ss_pred -------CCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-ccCchHHHHHHHHhhcc
Q 039792 641 -------HGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGI-EPGMEHYASVVSLLGRN 711 (819)
Q Consensus 641 -------~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~~~~y~~li~~l~r~ 711 (819)
.+..++|+++|.+.++ ..| |...=+.+.-.++..|++.+|..+|.+..+... -++ +|-.+...|--+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v~lNlah~~~e~ 693 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED--VWLNLAHCYVEQ 693 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--eeeeHHHHHHHH
Confidence 3457889999999988 677 567788888999999999999999999998332 222 222233333222
Q ss_pred cchhhhHHHHHHHHHccC--CCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 712 VWNVELGRYAAEMAISID--PMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 712 ~w~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+ +...|.++++..+... .+++.+...|+.+|.+.|+|.+|.+.....+.
T Consensus 694 ~-qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 694 G-QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred H-HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1 6677888888887763 35678999999999999999999999877654
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=5.3e-15 Score=167.60 Aligned_cols=284 Identities=11% Similarity=-0.005 Sum_probs=139.8
Q ss_pred hhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 039792 402 VDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLE 478 (819)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 478 (819)
+..+.+.|+.++|..+++.... .+...+..++.+....|++++|+..|+++... -+.+...+..+...+...|+.+
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~-~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV-NVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHH
Confidence 3344455566666555555432 12333444444555556666666666665443 1222333444444555555555
Q ss_pred hHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--CCe-eehhhhHHHHHhcCCHHHHHHHHHHHHH
Q 039792 479 SSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--RDI-VVWNAMLLGYTQQLENEEAIKLYLELLL 555 (819)
Q Consensus 479 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 555 (819)
.|...+..+.+.... +...+..+...+...|+.++|...++.+.. |+. ..+.. +..+...|++++|...++.+..
T Consensus 128 ~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 128 TVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555544222 334444555555555555555555554422 221 12211 1234555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH----HHHHHhcCC---CCCh
Q 039792 556 SQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED----AYETFGSTT---WKDV 628 (819)
Q Consensus 556 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~---~~~~ 628 (819)
....++...+..+..++...|++++|...++.+.+..+. +...+..+...|...|++++ |...|++.. +.+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~ 284 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV 284 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH
Confidence 322223333333344455555555555555555554433 44455555555555555553 455555443 2234
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..+..+...+...|++++|+..+++..+ ..|+. ..+..+..++...|++++|...++.+..
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555555555555555555555555555 44543 2344444555555555555555555554
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.74 E-value=1.6e-14 Score=164.42 Aligned_cols=418 Identities=12% Similarity=-0.024 Sum_probs=226.0
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHh
Q 039792 227 WTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSK 306 (819)
Q Consensus 227 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 306 (819)
+......+.+.|++++|++.|++... +.|+...|..+-.++...|+++.|...+...++... .+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 44556677788888888888888765 456667777777777777888888877777776532 245566667777777
Q ss_pred CCChHHHHHHHhcccCCCcc---cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHhcCCcchhhHHHH
Q 039792 307 CGRVKMARRLFDEIEVKNII---SWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPD-DFACSSVLTSCGSVEALEQGRQV 382 (819)
Q Consensus 307 ~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~ 382 (819)
.|++++|...|......+.. ....++.-+.. ..+........+. .|. ...+.. +..+...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KPENLPSVTF-VGNYLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CCCCCCCHHH-HHHHHHHccCCcchhh
Confidence 88888777766544321111 11111111111 1122222222221 111 111111 1111000000000000
Q ss_pred HHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHH---HHhcCChhHHHHHHHHHHhCC-CC
Q 039792 383 HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEG---YSKEEKLSEALDLFHEMRVGF-VP 458 (819)
Q Consensus 383 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~ 458 (819)
+... ...+... ...+..+... ....+++++|++.|++..+.+ ..
T Consensus 280 ~~~~----~~~~~~~----------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~ 327 (615)
T TIGR00990 280 LEDS----NELDEET----------------------------GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG 327 (615)
T ss_pred hhcc----ccccccc----------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 0000 0000000 0000000000 012345555555555555432 12
Q ss_pred CC-hhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhH
Q 039792 459 PG-LLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAML 534 (819)
Q Consensus 459 p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 534 (819)
|+ ...+..+-..+...|+++.|...++..++.... ....|..+...+...|++++|...|+...+ .+...|..+.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22 223333333444455555555555554443211 233455556666666777777776665543 2345666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLE 614 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 614 (819)
..+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++..++..+. +...++.+...|...|+++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHH
Confidence 77777777777777777776642 224455666666777777788888777777765433 5667777777777888888
Q ss_pred HHHHHHhcCC--CCC-hH-------hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHH
Q 039792 615 DAYETFGSTT--WKD-VA-------CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGL 683 (819)
Q Consensus 615 ~A~~~~~~~~--~~~-~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 683 (819)
+|.+.|++.. .|+ .. .++..+..+...|++++|.+++++..+ +.|+. ..+..+...+...|++++|+
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 8887777644 221 11 122222333446788888888888776 56654 45777777888888888888
Q ss_pred HHHHHHHh
Q 039792 684 DHFQSMAG 691 (819)
Q Consensus 684 ~~~~~m~~ 691 (819)
++|++..+
T Consensus 563 ~~~e~A~~ 570 (615)
T TIGR00990 563 KLFERAAE 570 (615)
T ss_pred HHHHHHHH
Confidence 88877765
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=3e-14 Score=165.20 Aligned_cols=390 Identities=10% Similarity=-0.018 Sum_probs=227.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCC
Q 039792 331 LIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDS 410 (819)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 410 (819)
.+......|+.++|++++.+.... -..+...+..+...+...|++++|..+++..++.. +.+......+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 344455566666666666665541 11122234444444555555555555555544431 1122233344444444455
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHh
Q 039792 411 LTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY 490 (819)
Q Consensus 411 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 490 (819)
.++|. ..+++..+. .+.+.. +..+..++...|+.+.|...++.+.+.
T Consensus 99 ~~eA~-------------------------------~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 99 YDEAL-------------------------------VKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHH-------------------------------HHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55544 444444432 111222 333344444444444444444444444
Q ss_pred CCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC-CCe------eehhhhHHHH-----HhcCCH---HHHHHHHHHHHH
Q 039792 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ-RDI------VVWNAMLLGY-----TQQLEN---EEAIKLYLELLL 555 (819)
Q Consensus 491 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~ 555 (819)
... +...+..+...+.+.+..+.|.+.++.... |+. .....++..+ ...+++ ++|++.++.+..
T Consensus 146 ~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 146 APQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 333 233333455556666666666666665554 110 0111111111 112233 678888888875
Q ss_pred C-CCCCCHH-HHH----HHHHHHhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 039792 556 S-QQRPNEF-TFA----ALITAASNLGSLKHGQQFHNHLIKLGLD-FDSFITSALIDMYAKCGSLEDAYETFGSTTW--K 626 (819)
Q Consensus 556 ~-g~~p~~~-t~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 626 (819)
. ...|+.. .+. ..+.++...|++++|...++.+.+.+.. |+- ....+...|...|++++|...|+++.. |
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 3 2223221 111 1133455668888999988888877642 222 222357788888999999998887652 2
Q ss_pred C-----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-------------Cc---hhHHHHHHHHHccCCHHHHHHH
Q 039792 627 D-----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-------------NY---ITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 627 ~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~---~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
. ...+..+..++...|++++|.++++++.+. .| +. ..+..+...+...|++++|+++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 234556677788889999999999988873 33 32 1345566678888999999999
Q ss_pred HHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 686 FQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 686 ~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
++++.. ..-. ...+..+..++.+.+ +.+.|+..++++++++|++...+..++..+...|+|++|.++++++.+.
T Consensus 382 l~~al~~~P~n--~~l~~~lA~l~~~~g-~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGN--QGLRIDYASVLQARG-WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCC--HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999877 3222 334555555554333 6889999999999999999999999999999999999999999888753
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=2.4e-14 Score=162.22 Aligned_cols=328 Identities=10% Similarity=0.006 Sum_probs=228.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhc
Q 039792 328 WTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAK 407 (819)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 407 (819)
...++..+.+.|++++|+.+++........+ ...+..+..++...|+++.|...++.+.+... .+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 4455666777777777777777776642222 22333344445567777777777777776532 234556667777778
Q ss_pred CCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHH
Q 039792 408 CDSLTEARKVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIH 484 (819)
Q Consensus 408 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 484 (819)
.|++++|...|++... | +...|..+...+...|++++|...++++......+.. .+.. +..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHHH
Confidence 8888888888877654 3 4556777778888888888888888877554322222 2222 23466778888888887
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHH----HHHHHHHHHHCC
Q 039792 485 GLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEE----AIKLYLELLLSQ 557 (819)
Q Consensus 485 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g 557 (819)
..+.+....++......+...+.+.|+.++|...|+...+ .+...+..+...|...|++++ |+..|++.....
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 7776654444444455566777888888888888887764 244566777788888888875 788888887642
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHh-HHHH
Q 039792 558 QRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVAC-WNSM 634 (819)
Q Consensus 558 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~l 634 (819)
+.+...+..+...+...|++++|...++.+.+..+. +...+..+...|.+.|++++|.+.|+++. .|+... +..+
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 335567778888888889999999999888887654 56677778888889999999999888776 444433 3445
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
...+...|+.++|++.|++..+ ..|+.
T Consensus 359 a~al~~~G~~deA~~~l~~al~--~~P~~ 385 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQ--ARASH 385 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hChhh
Confidence 6678888999999999999887 56654
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=1.8e-13 Score=158.73 Aligned_cols=404 Identities=11% Similarity=-0.026 Sum_probs=192.6
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc---CCCcccHHHHHHHHHcCCCh
Q 039792 265 VLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE---VKNIISWTTLIGGYMQNSFD 341 (819)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 341 (819)
.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3334444444444444444443311 2233334455555555555555555555532 12233344444555555555
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhc
Q 039792 342 REAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVM 421 (819)
Q Consensus 342 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (819)
++|+..+++..+. .|+...+..+...+...|+.+.|...++.+.+.... +...+..+...+.+.+..++|...++..
T Consensus 100 ~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 5555555555442 232221333444444555555555555555543222 2233334455555556666666666555
Q ss_pred CC-CCc------chHHHHHHHHH-----hcCCh---hHHHHHHHHHHhC-CCCCChh-HHH----HHHHHhhccCchHhH
Q 039792 422 AD-RNV------VSYNAMIEGYS-----KEEKL---SEALDLFHEMRVG-FVPPGLL-TFV----SLLGLSSSVFSLESS 480 (819)
Q Consensus 422 ~~-~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a 480 (819)
.. |+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...++.++|
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 43 110 01111111111 11122 4555555555432 1112111 110 001122233444444
Q ss_pred HHHHHHHHHhCCc-cchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039792 481 KQIHGLIIKYGVF-LDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR 559 (819)
Q Consensus 481 ~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 559 (819)
...++.+.+.+.. |+. .... +...|...|++++|+..|+++......
T Consensus 257 ~~~~~~ll~~~~~~P~~-a~~~-------------------------------la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPW-AQRW-------------------------------VASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred HHHHHHhhccCCCCCHH-HHHH-------------------------------HHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 4444444333211 111 1111 233444555555555555554432100
Q ss_pred C---CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----------CCc---hhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 560 P---NEFTFAALITAASNLGSLKHGQQFHNHLIKLGL-----------DFD---SFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 560 p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
. .......+..++...|++++|..+++.+.+..+ .|+ ...+..+...+...|++++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 012233333444555555555555555544321 122 22445566677777777777777776
Q ss_pred CC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC
Q 039792 623 TT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG 697 (819)
Q Consensus 623 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~ 697 (819)
+. +.+...+..+...+...|++++|++.+++.++ +.|+.. .+......+...|++++|..+++.+++ ..-.|.
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 55 33556777777777777888888888887777 667653 455555567777788888888888777 555555
Q ss_pred chHHHHHHH
Q 039792 698 MEHYASVVS 706 (819)
Q Consensus 698 ~~~y~~li~ 706 (819)
+..+.-..+
T Consensus 463 ~~~~~~~~~ 471 (765)
T PRK10049 463 VQRLARARD 471 (765)
T ss_pred HHHHHHHHH
Confidence 544444443
No 26
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.71 E-value=1.7e-13 Score=146.07 Aligned_cols=642 Identities=14% Similarity=0.038 Sum_probs=339.7
Q ss_pred HHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCCC----CcchHHHHHHHHHcCCChhhHHHHHHHHHHcC
Q 039792 73 QVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSER----NLVSWSSLVSMYTKKGYGEEALMVFIGFLKVG 148 (819)
Q Consensus 73 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 148 (819)
..+..+...|+.|+..+|.+|+.-||..|+++.|- +|.-|.-+ +-..++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45566677899999999999999999999999888 77766421 1223444444444444332221
Q ss_pred CCCCCcccHHHHHHHHhcCCCCCCCchhHH----------------------------------------------HHHH
Q 039792 149 NGRPDDYILSSVICACTQLGGGGDGGNVGE----------------------------------------------QMHS 182 (819)
Q Consensus 149 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~----------------------------------------------~~~~ 182 (819)
.|...||..++++|+..|++.. .+.++ .+.+
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 3344444444444444444331 12222 2222
Q ss_pred HHHHhCC-CCCcchhhHHHHHHHhcC--ChhHHHHHHh---cCC-CCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCC
Q 039792 183 FVIKSGF-DRDVYVGTSLMNLYAKNG--SVDDAKFVFD---GLM-VKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDV 255 (819)
Q Consensus 183 ~~~~~g~-~~~~~~~~~ll~~~~~~g--~~~~A~~~f~---~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 255 (819)
..++.+. .|...-++...- +.+.. .....+++.+ ... .++..+|..++..-.-+|+.+.|..++.+|++.|.
T Consensus 157 qllkll~~~Pvsa~~~p~~v-fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV-FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHhhCCcccccchHHH-HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 2223221 111000000000 11110 1111111111 111 35777788888888888888888888888888888
Q ss_pred CCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHH
Q 039792 256 VHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGY 335 (819)
Q Consensus 256 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 335 (819)
+.+.+-|-.||-+ .++...+..++.-|...|+.|+..|+...+-...+.|....+... .+....+++-+..-
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsa 307 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSA 307 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHH
Confidence 8888877777766 677777788888888888888888888777766665553322211 12222222222222
Q ss_pred HcCCChhHHHHH------------HHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCC---ChhHHhH
Q 039792 336 MQNSFDREAMKL------------FTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIES---DNFVKNS 400 (819)
Q Consensus 336 ~~~g~~~~A~~~------------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~ 400 (819)
.-+| ..|.+. +.+..-.|+......| ++..-....|.-+...++-+.+..-.... ++..+..
T Consensus 308 a~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~ 384 (1088)
T KOG4318|consen 308 ACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA 384 (1088)
T ss_pred Hhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHH
Confidence 2223 112221 2222222332222222 12111222444444444444443211111 1112222
Q ss_pred HhhhhhcCCCHHHHHHHHHhcCCCCcch-HHHHHHHHHh---cC------------ChhHHHHHHHHHHhC----CCC--
Q 039792 401 LVDMYAKCDSLTEARKVFDVMADRNVVS-YNAMIEGYSK---EE------------KLSEALDLFHEMRVG----FVP-- 458 (819)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~li~~~~~---~g------------~~~~A~~~~~~m~~~----g~~-- 458 (819)
+ +...|.+...+.... ++ .-.+... .. +...+++-+..+... -..
T Consensus 385 ~------------lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~ 451 (1088)
T KOG4318|consen 385 L------------LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPW 451 (1088)
T ss_pred H------------HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccc
Confidence 2 334444443322111 11 1111111 11 111222222211100 001
Q ss_pred -----CChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCC------e
Q 039792 459 -----PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRD------I 527 (819)
Q Consensus 459 -----p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~ 527 (819)
+=...-..++..|++..+..++...-+.....-+ ...|..||+.++...+.+.|..+.++...++ .
T Consensus 452 ~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~ 528 (1088)
T KOG4318|consen 452 PLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDL 528 (1088)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhccc
Confidence 1112234455555555555555544444333222 2568889999999999999999999888654 3
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQ-RP-NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALID 605 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 605 (819)
.-+..+.+.+.+.+....+..++++|.+.-. .| ...++--+++.....|..+...++++-+...|+.-+ .-++.
T Consensus 529 ~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~ 604 (1088)
T KOG4318|consen 529 PLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWM 604 (1088)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceE
Confidence 4567778888888999999999998886422 22 245566777788888898888888888877766532 22334
Q ss_pred HHHhcCCHHHHHHHHhcCC------CCChHhHHHH------------------HHHHHhCCChHHHHHHHHHH-------
Q 039792 606 MYAKCGSLEDAYETFGSTT------WKDVACWNSM------------------ICTNAHHGEPMKALLLFREM------- 654 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l------------------i~~~~~~g~~~~A~~~~~~m------- 654 (819)
...+.++...|.++++... +.+...|..+ |.-|.+.|++.+|-++.+.=
T Consensus 605 vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~ 684 (1088)
T KOG4318|consen 605 VHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNG 684 (1088)
T ss_pred EEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCC
Confidence 4455666666666554322 1111122111 11244444444443332210
Q ss_pred ----HHcC-CCC---------CchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc--hhhhH
Q 039792 655 ----IIEG-LEP---------NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW--NVELG 718 (819)
Q Consensus 655 ----~~~g-~~p---------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w--~~~~a 718 (819)
...| +.| +..-..-|+..|.+.|+++.|..+|.+|. +.|+......|.+.+.+..- |+...
T Consensus 685 RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~ 761 (1088)
T KOG4318|consen 685 RDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEI 761 (1088)
T ss_pred CccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhH
Confidence 0000 011 00112337788999999999999999987 77887777777777776522 66666
Q ss_pred HHHHHHHHccCCCCc---hhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 719 RYAAEMAISIDPMDS---GSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 719 ~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
....+++-++.|..+ ..|.-.+-+..+-.+-+.|.+.+.+..+..
T Consensus 762 q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 762 QAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred HHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHcc
Confidence 667777777766544 334444444444444457888888888773
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.9e-13 Score=131.10 Aligned_cols=429 Identities=16% Similarity=0.129 Sum_probs=255.8
Q ss_pred CeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhh--ccCChhhHH-HHHHHHHHhCCCCchhHHHH
Q 039792 223 TAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACS--MLQFVGGGK-QIHAHVLRRGMGMDVSVINV 299 (819)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~ 299 (819)
.+++=|.|+. ....|...++.-+|+.|+..|+..+...-..|+..-+ ...+..-++ +.|-.|.+.|-.. ..+
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~s--- 189 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSS--- 189 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-ccc---
Confidence 3456666665 4567899999999999999998888776666655433 223332221 2222333333221 111
Q ss_pred HHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhH
Q 039792 300 LMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQG 379 (819)
Q Consensus 300 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 379 (819)
-|.|++.+ ++-+...+...++.+||.|.|+--..+.|.++|++-.....+.+..+||.+|.+.+ +..+
T Consensus 190 -----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~ 257 (625)
T KOG4422|consen 190 -----WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVG 257 (625)
T ss_pred -----cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhcc
Confidence 13455544 55555556678999999999999999999999999998888999999999998753 3344
Q ss_pred HHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHH----hcC----CCCcchHHHHHHHHHhcCChhH-HHHHHH
Q 039792 380 RQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFD----VMA----DRNVVSYNAMIEGYSKEEKLSE-ALDLFH 450 (819)
Q Consensus 380 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 450 (819)
+++..+|....+.||..++|+++.+..+.|+++.|++.+- +|. +|...+|..+|..+++.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 8899999999999999999999999999998887765432 222 2444455555555555444422 223333
Q ss_pred HHHh----CCCC---C-ChhHHHHHHHHhhccCchHhHHHHHHHHHHhC---CccchhhHHHHHHHHHhcCChHHHHHHH
Q 039792 451 EMRV----GFVP---P-GLLTFVSLLGLSSSVFSLESSKQIHGLIIKYG---VFLDVFAGSALIDAYSKCFSNKDARLVF 519 (819)
Q Consensus 451 ~m~~----~g~~---p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 519 (819)
++.. ...+ | |...|...+..|.+..+.+.|.++++.+.... +.++..
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~---------------------- 395 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ---------------------- 395 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH----------------------
Confidence 3221 1111 1 22234444445555555555544444333210 000000
Q ss_pred HhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 039792 520 DEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFI 599 (819)
Q Consensus 520 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 599 (819)
....-|..+....++....+.-+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|.......
T Consensus 396 -----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 396 -----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 011234455666777777888888888888777788888888899988888899888888888888776544444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhC-CChHHHH-HHHHHHHHcCCCCCchhHHHHHHHHHccC
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHH-GEPMKAL-LLFREMIIEGLEPNYITFVGVLSACSHAG 677 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 677 (819)
..-+...+++.. ..|+...-..+-...++. -++.++. ..-.+|.+..+ .....+.++-.+.+.|
T Consensus 471 ~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G 536 (625)
T KOG4422|consen 471 REEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAG 536 (625)
T ss_pred HHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcc
Confidence 433333333322 022211111111111110 1111221 22334444333 3334555556677778
Q ss_pred CHHHHHHHHHHHHh-cCCccCchHHHHHHHHhh
Q 039792 678 LIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLG 709 (819)
Q Consensus 678 ~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~ 709 (819)
..++|.++|....+ ..-.|.....++|+.+..
T Consensus 537 ~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 537 RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 88888888777755 444455555565555544
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.70 E-value=1.2e-13 Score=147.15 Aligned_cols=261 Identities=11% Similarity=0.046 Sum_probs=144.7
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcc
Q 039792 115 ERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVY 194 (819)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 194 (819)
.||.+||..+|.-||..|+.+.|- +|.-| +....+.+...|+.++.+....++.+.+. .|...
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk---------------ep~aD 84 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK---------------EPLAD 84 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC---------------CCchh
Confidence 588899999999999999998888 88888 77777788888999998888888876442 67788
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHH-HCCCCCChhhHHHHHHHhhccC
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMR-ETDVVHDKYLLSSVLSACSMLQ 273 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~~ 273 (819)
+|+.|+..|...|++.. .+..++ ..-.++..+..+|....-..++.... .-+.-||..+... .....|
T Consensus 85 tyt~Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~il---llv~eg 153 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAIL---LLVLEG 153 (1088)
T ss_pred HHHHHHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHH---HHHHHH
Confidence 99999999999988765 221111 11223333444444444333333321 1122333322111 111122
Q ss_pred ChhhHHHHHHHHHHhCCCCchhHHHHHHHHhH-hCCChHHHHHHHhcccC-CCcccHHHHHHHHHcCCChhHHHHHHHHH
Q 039792 274 FVGGGKQIHAHVLRRGMGMDVSVINVLMDFYS-KCGRVKMARRLFDEIEV-KNIISWTTLIGGYMQNSFDREAMKLFTEM 351 (819)
Q Consensus 274 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 351 (819)
-++.+.+++..+......- ++.. .+.-.. -...+++-........+ ++..+|.+++..-..+|+.+.|..++.+|
T Consensus 154 lwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2222222222111110000 0000 011110 11223333333333332 56666666666666666666666666666
Q ss_pred HHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCC
Q 039792 352 TRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCD 409 (819)
Q Consensus 352 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 409 (819)
+++|+..+..-|..++-+ .++...+..++.-|...|+.|+..|+...+-.+.+.|
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 666666666666666654 5566666666666666666666666665555444433
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=1.4e-12 Score=148.04 Aligned_cols=429 Identities=10% Similarity=0.008 Sum_probs=207.4
Q ss_pred HhCCChHHHHHHHhcccCCCcc---cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHH---HHHhcCCcchhh
Q 039792 305 SKCGRVKMARRLFDEIEVKNII---SWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSV---LTSCGSVEALEQ 378 (819)
Q Consensus 305 ~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~ 378 (819)
.+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555432221 12255555555566666655555554 2322222222 223444455555
Q ss_pred HHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039792 379 GRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNV--VSYNAMIEGYSKEEKLSEALDLFHEMRVGF 456 (819)
Q Consensus 379 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 456 (819)
|.++++.+.+.... +..++..++..|...++.++|++.++++...+. ..+-.++..+...++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 55555555554332 244555677778888888888888888876433 333333333333555656888888887652
Q ss_pred CCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHH
Q 039792 457 VPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLG 536 (819)
Q Consensus 457 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 536 (819)
+-+...+.....+..+.|-...|.++...-... +. ......| . .+.|.+..+-...++.. .-.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l-~-------~~~~a~~vr~a~~~~~~----~~~- 262 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQL-E-------RDAAAEQVRMAVLPTRS----ETE- 262 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHH-H-------HHHHHHHHhhccccccc----chh-
Confidence 334555566667777777776666555432110 00 0000000 0 01111111100000000 000
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 039792 537 YTQQLENEEAIKLYLELLLS-QQRPNE-F----TFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610 (819)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~-g~~p~~-~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 610 (819)
+---.+.|+.-++.+... +-.|.. . ...--+-++...|+..++...++.+...+.+....+-.++.++|...
T Consensus 263 --r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 263 --RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred --hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 000123334444443321 111211 1 11122334455555666666666665555443444555566666666
Q ss_pred CCHHHHHHHHhcCCCC---------ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----------CCC--ch-hHH
Q 039792 611 GSLEDAYETFGSTTWK---------DVACWNSMICTNAHHGEPMKALLLFREMIIEGL-----------EPN--YI-TFV 667 (819)
Q Consensus 611 g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~-t~~ 667 (819)
++.++|..+++.+..+ +......|..+|...+++++|..+++++.+..- .|| -. .+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 6666666666554311 112234455566666666666666666654100 111 11 123
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 668 GVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
.+...+...|++.+|.+.++++.. .+- +......+.+++...+ ....|+...+.+..++|++......++..+...
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~--n~~l~~~~A~v~~~Rg-~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPA--NQNLRIALASIYLARD-LPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 334455566666666666666654 221 2233344444444322 445555555666666666666666666666666
Q ss_pred CCchHHHHHHHHHH
Q 039792 747 SMWADAKQVRKKMD 760 (819)
Q Consensus 747 g~~~~a~~~~~~m~ 760 (819)
|+|.+|.++.+...
T Consensus 498 ~e~~~A~~~~~~l~ 511 (822)
T PRK14574 498 QEWHQMELLTDDVI 511 (822)
T ss_pred hhHHHHHHHHHHHH
Confidence 66666666555443
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=2.8e-12 Score=145.64 Aligned_cols=437 Identities=11% Similarity=0.062 Sum_probs=238.3
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCCeee---HHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChh
Q 039792 200 MNLYAKNGSVDDAKFVFDGLMVKTAVS---WTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVG 276 (819)
Q Consensus 200 l~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 276 (819)
+-...+.|+++.|...|++..+.++.. ...++..+...|+.++|+..+++... ...........+...+...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 334678899999999998885443331 33777888888999999999988761 11112222333345677778999
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHc--CCChhHHHHHHHHHHHC
Q 039792 277 GGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQ--NSFDREAMKLFTEMTRS 354 (819)
Q Consensus 277 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 354 (819)
.|.++++.+++.... ++.++..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999988887644 356666778888888999999998888875444332224444444 45555588888888874
Q ss_pred CCCCC-cchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHH
Q 039792 355 GWKPD-DFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 433 (819)
Q Consensus 355 g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 433 (819)
.|+ ...+.....++.+.|-...|.++...- |+.++-..... =..+.|.+..+.-..++.
T Consensus 199 --~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~------- 258 (822)
T PRK14574 199 --APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQVRMAVLPTR------- 258 (822)
T ss_pred --CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHHhhcccccc-------
Confidence 464 444556666666777666666554431 11111000000 001111111111000000
Q ss_pred HHHHhcCC---hhHHHHHHHHHHhC-CC-CCChhH----HHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHH
Q 039792 434 EGYSKEEK---LSEALDLFHEMRVG-FV-PPGLLT----FVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALID 504 (819)
Q Consensus 434 ~~~~~~g~---~~~A~~~~~~m~~~-g~-~p~~~t----~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 504 (819)
....+ .+.|+.-++.+... +. ++.... ..-.+-++...++...+...++.+...|......+-.++.+
T Consensus 259 ---~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 259 ---SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ---cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 00111 23344444444321 11 221111 12233445555556666666666655555444445556666
Q ss_pred HHHhcCChHHHHHHHHhcCCCC---------eeehhhhHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCH
Q 039792 505 AYSKCFSNKDARLVFDEMNQRD---------IVVWNAMLLGYTQQLENEEAIKLYLELLLSQ-------------QRPNE 562 (819)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~ 562 (819)
+|...+++++|..+|+.+...+ ......|.-+|...+++++|..+++++.+.- ..||-
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 6666666666666666553311 1112445566666666666666666665421 11222
Q ss_pred HH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHH
Q 039792 563 FT-FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTN 638 (819)
Q Consensus 563 ~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 638 (819)
.. +..+...+...|++.+|++.++.+....+. |..+...+.+.+...|.+.+|.+.++... +.+.......+..+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 22 222344455566666666666666555443 55666666666666666666666665433 22333444455555
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
...|++++|..+.+...+ ..|+..
T Consensus 495 l~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred HhhhhHHHHHHHHHHHHh--hCCCch
Confidence 555666666666655555 455544
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=7.1e-10 Score=114.99 Aligned_cols=489 Identities=13% Similarity=0.070 Sum_probs=373.4
Q ss_pred hhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc---CCCcccHHHHHHHHHcCCChhHHH
Q 039792 269 CSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE---VKNIISWTTLIGGYMQNSFDREAM 345 (819)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 345 (819)
.....+.+.|+.++...++.- +.+.. |.-+|++..-++.|.++++... ..+...|-+-...--.+|+.+...
T Consensus 386 AVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 334455555777777776642 22333 3345566677788888877654 346667777666667788888887
Q ss_pred HHHHH----HHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCC--hhHHhHHhhhhhcCCCHHHHHHHHH
Q 039792 346 KLFTE----MTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESD--NFVKNSLVDMYAKCDSLTEARKVFD 419 (819)
Q Consensus 346 ~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 419 (819)
++..+ +...|+..|..-|..=..+|-..|..-....|....+..|++.. ..+++.-...|.+.+.++-|+.+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 77655 45668888888888888889999999999999999999888654 4577888889999999999999998
Q ss_pred hcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccch
Q 039792 420 VMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDV 496 (819)
Q Consensus 420 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 496 (819)
...+ .+...|...+..--..|..++...+|++.... ++-....+.....-.-..|++..+..++..+.+.... +.
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-se 618 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SE 618 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cH
Confidence 8765 46678888888878889999999999998865 4444555666666677789999999999999887665 77
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC--CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQ--RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE-FTFAALITAAS 573 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~ 573 (819)
..+-+-+........++.|..+|.+... ++...|.--+..---.++.++|++++++-.+. -|+. ..|..+-+.+.
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 7888888899999999999999998765 66677776666667778999999999888764 4554 45677777888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHH
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLL 650 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 650 (819)
+.++++.|...|..-.+.-+ ..+..|-.|.+.-.+.|.+-.|+.+|++.. ++|...|-..|..-.++|+.+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 88999999888876665533 367788889999999999999999999877 45778999999999999999999999
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc---hhhhHHHHHHHHHc
Q 039792 651 FREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW---NVELGRYAAEMAIS 727 (819)
Q Consensus 651 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w---~~~~a~~~~~~~~~ 727 (819)
..+.++. +.-+...|.--|...-+.++--.....+++. ...|.+ +-..++.-| .++.++.-++++++
T Consensus 776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc---e~dphV------llaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC---EHDPHV------LLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc---cCCchh------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888773 3334567777777777766644444443332 223321 112223235 88999999999999
Q ss_pred cCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEE
Q 039792 728 IDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEV 779 (819)
Q Consensus 728 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~ 779 (819)
++|++..+|..+...+...|.-++-.+++++.... .|.-|..|+-+...+
T Consensus 846 ~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 846 KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 99999999999999999999999999999877653 355688888765433
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=8.8e-11 Score=126.64 Aligned_cols=617 Identities=13% Similarity=0.075 Sum_probs=371.5
Q ss_pred HcCCChhhHHHHHhccCC---CCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCc
Q 039792 98 SKANDLDGARKLFDTMSE---RNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGG 174 (819)
Q Consensus 98 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 174 (819)
...|++++|.+++.++.. .+...|.+|-..|-+.|+.++++..+--. ....
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA---AHL~----------------------- 203 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA---AHLN----------------------- 203 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH---HhcC-----------------------
Confidence 334999999999988864 45678999999999999988887765322 1222
Q ss_pred hhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHH---HHHHHhcCCchhHHHHHHHHH
Q 039792 175 NVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTI---ITGYVKSGRSDLSLNLFNQMR 251 (819)
Q Consensus 175 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~ 251 (819)
+.|...|..+-+...+.|.++.|.-.|.+..+.++.-|..+ +..|-+.|+...|.+.|.++.
T Consensus 204 ---------------p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 204 ---------------PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred ---------------CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 23345566666667777888888888877755444444433 456777888888888888887
Q ss_pred HCCCCCChhhHHH----HHHHhhccCChhhHHHHHHHHHHh-CCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC----
Q 039792 252 ETDVVHDKYLLSS----VLSACSMLQFVGGGKQIHAHVLRR-GMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV---- 322 (819)
Q Consensus 252 ~~g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 322 (819)
....+.|-.-+.. +++.+...++-+.|.+.++..... +-..+...++.++..|.+...++.|......+..
T Consensus 269 ~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e 348 (895)
T KOG2076|consen 269 QLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE 348 (895)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence 6543223222322 344455566667777776666553 2233555677777888887777777766554432
Q ss_pred ----------------------CCcccHHH----HHHHHHcCCChhHHHHHHHHHHHCCCCC--CcchHHHHHHHhcCCc
Q 039792 323 ----------------------KNIISWTT----LIGGYMQNSFDREAMKLFTEMTRSGWKP--DDFACSSVLTSCGSVE 374 (819)
Q Consensus 323 ----------------------~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~ 374 (819)
++..+|+. +.-++.+....+....+...+.+..+.| +...|.-+..++...|
T Consensus 349 ~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~ 428 (895)
T KOG2076|consen 349 KDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG 428 (895)
T ss_pred CChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc
Confidence 11122222 2223334444444444455555555444 4556777888888999
Q ss_pred chhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhHHHHHHHH
Q 039792 375 ALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEALDLFHE 451 (819)
Q Consensus 375 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (819)
.+..|..++..+......-+..+|--+..+|...|..++|...|+.+.. | +...--+|-..+.+.|+.++|++.+..
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999888876666778888888899999999999999988765 3 233444566778888999999999888
Q ss_pred HH--------hCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCC----------------------ccchhhHHH
Q 039792 452 MR--------VGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGV----------------------FLDVFAGSA 501 (819)
Q Consensus 452 m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~----------------------~~~~~~~~~ 501 (819)
|. ..+..|+..........+...|+.++-..+-..|+.... .........
T Consensus 509 ~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~ 588 (895)
T KOG2076|consen 509 IINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQ 588 (895)
T ss_pred ccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHH
Confidence 63 233555566666666677777877776665555543211 111222222
Q ss_pred HHHHHHhcCChHHHHHHHHhc--------CCCCee----ehhhhHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH---HH
Q 039792 502 LIDAYSKCFSNKDARLVFDEM--------NQRDIV----VWNAMLLGYTQQLENEEAIKLYLELLLSQQ--RPNE---FT 564 (819)
Q Consensus 502 li~~~~~~g~~~~A~~~~~~~--------~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~t 564 (819)
++.+-.+.++.....+-...- ..-... .+.-++.++++.+++++|+.+...+..... .++. ..
T Consensus 589 ~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l 668 (895)
T KOG2076|consen 589 IIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKEL 668 (895)
T ss_pred HHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHH
Confidence 333333333322222111111 011111 233466778889999999998888775432 2222 11
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC--hHhHHHHHH
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKL-GLDF---DSFITSALIDMYAKCGSLEDAYETFGSTT--WKD--VACWNSMIC 636 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~li~ 636 (819)
=...+.++...+++..|...++.++.. ++.. -...||...+...+.|+-.-=.+.+.... .++ +.....-..
T Consensus 669 ~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh 748 (895)
T KOG2076|consen 669 QFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGH 748 (895)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeech
Confidence 234566678889999999988888754 2211 24456655555555554443344443332 222 222222222
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHH-HHHccC----------CHHHHHHHHHHHHh-cCCccCchHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLS-ACSHAG----------LIEDGLDHFQSMAG-FGIEPGMEHYASV 704 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g----------~~~~a~~~~~~m~~-~g~~p~~~~y~~l 704 (819)
-....+.+.-|+..+-+... ..||....+.++. ++.+.- .+-+|..++++-.+ .+..-.-+.+-.+
T Consensus 749 ~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNi 826 (895)
T KOG2076|consen 749 NLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNI 826 (895)
T ss_pred hHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 33456778888888777776 6788655544443 444321 23456666655555 2221111222222
Q ss_pred HHHhhcccchhhhHHHHHHHHHccCCCCc------------hhHHHHHHHHHhCCCchHHHHHHHH
Q 039792 705 VSLLGRNVWNVELGRYAAEMAISIDPMDS------------GSYTLLSNTFACNSMWADAKQVRKK 758 (819)
Q Consensus 705 i~~l~r~~w~~~~a~~~~~~~~~~~p~~~------------~~~~~l~~~y~~~g~~~~a~~~~~~ 758 (819)
..+|...+ =+..|...+++++++.|.+. .+-..|.-||-.+|...-|.++.++
T Consensus 827 gRayh~~g-l~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 827 GRAYHQIG-LVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHcc-cHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 22222211 55788889999999976421 2345678899999999999998764
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=2.6e-11 Score=119.79 Aligned_cols=467 Identities=12% Similarity=0.077 Sum_probs=287.8
Q ss_pred HHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHH-HHHHhhccCChhhHHHHHHHHHHhCCCCch----hHHHHHHHHhH
Q 039792 231 ITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSS-VLSACSMLQFVGGGKQIHAHVLRRGMGMDV----SVINVLMDFYS 305 (819)
Q Consensus 231 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~ 305 (819)
..-|..+....+|+..|+-..+....|+...... +-+.+.+.+.+..|...+...+..-...+. .+.+.+--.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3456666777888888888888777777654432 234456677788888888877766433332 23444444577
Q ss_pred hCCChHHHHHHHhccc--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH--------HHHHHhcCCcc
Q 039792 306 KCGRVKMARRLFDEIE--VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACS--------SVLTSCGSVEA 375 (819)
Q Consensus 306 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--------~ll~~~~~~~~ 375 (819)
+.|.++.|+.-|+... .||..+--.|+-++..-|+.++..+.|.+|..--..||..-|. .|+.-..+..
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd- 366 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND- 366 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH-
Confidence 8899999999998876 4665543334445556788888888899888765555554441 1111111110
Q ss_pred hhhHHHHHHHHHHcCCC---CChhHHhHHhh----hhhcCCCHHHHHHHHHhcCC-CC-cchHHHHHHHHHhcCChhHHH
Q 039792 376 LEQGRQVHAYSFKANIE---SDNFVKNSLVD----MYAKCDSLTEARKVFDVMAD-RN-VVSYNAMIEGYSKEEKLSEAL 446 (819)
Q Consensus 376 ~~~a~~~~~~~~~~g~~---~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~-~~-~~~~~~li~~~~~~g~~~~A~ 446 (819)
.+..|.+..-. .-..+-.-+|. --...|. +-..+.++.-.. += ...--.-...|.++|+++.|+
T Consensus 367 ------~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~-dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 367 ------HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC-DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred ------HHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc-HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 11111111000 00000000100 0000000 000001100000 00 000001123478899999999
Q ss_pred HHHHHHHhCCCCCChhHH--HHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC
Q 039792 447 DLFHEMRVGFVPPGLLTF--VSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ 524 (819)
Q Consensus 447 ~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 524 (819)
++++-..+..-+.-...- .+++.......++..|.+.-+..+...-- +......-.+.-...|++++|.+.+.+...
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 999888665433322222 23333333344666666665555432110 111111111223356899999999999988
Q ss_pred CCeeehhhhHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 039792 525 RDIVVWNAMLL---GYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITS 601 (819)
Q Consensus 525 ~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 601 (819)
.|..+-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.+.|....+...|.+++.+.... ++.|+.+.+
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 77665555443 366789999999999887643 3456667778888888888999999988877665 345899999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH-HccC
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSAC-SHAG 677 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g 677 (819)
-|.+.|-+.|+-..|....-.-- +-|+.+..=|..-|....-+++|+.+|++..- +.|+..-|..++..| .+.|
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 99999999999999987654332 45666666677778888889999999999877 899999998887755 5789
Q ss_pred CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc
Q 039792 678 LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN 711 (819)
Q Consensus 678 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~ 711 (819)
++.+|.++++.... .+..+.+....++...|.-
T Consensus 675 nyqka~d~yk~~hr-kfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred cHHHHHHHHHHHHH-hCccchHHHHHHHHHhccc
Confidence 99999999988865 3456777777788777643
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3.2e-11 Score=120.81 Aligned_cols=218 Identities=12% Similarity=0.096 Sum_probs=176.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 039792 537 YTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDA 616 (819)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 616 (819)
+.-.|+.-.|.+-|+..+.....++.. |.-+-..+....+-++....|....+.++. ++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 344688889999999998865444432 777777889999999999999999998876 888999999999999999999
Q ss_pred HHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 039792 617 YETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGF 692 (819)
Q Consensus 617 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 692 (819)
..=|++.. +.++..|-.+..+.-+.++++++...|++.++ --|+ ...|+.....+...+++++|.+.|+..++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999877 33566777777777788899999999999998 4566 46899999999999999999999999987
Q ss_pred CCccCch-HHHHHHHHhhcc----cc--hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 693 GIEPGME-HYASVVSLLGRN----VW--NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 693 g~~p~~~-~y~~li~~l~r~----~w--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+.|+.+ ++....-+.+++ .| |+..|....++++++||....+|..|+.+-.+.|+.++|.++|++-.
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222210 010011111111 37 99999999999999999999999999999999999999999998754
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=6.1e-09 Score=112.76 Aligned_cols=567 Identities=11% Similarity=0.087 Sum_probs=366.1
Q ss_pred CCCcchhhHHHHHHHhcCChhHHHHHHhcC---CCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHH
Q 039792 190 DRDVYVGTSLMNLYAKNGSVDDAKFVFDGL---MVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVL 266 (819)
Q Consensus 190 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 266 (819)
+.+...|-.|-..|-..|+.+++...+=.. ...|..-|-.+-.-..+.|+++.|.-.|.+..+.. +++...+---.
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers 248 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERS 248 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 345567888999999999999998776433 55677889999999999999999999999998763 23333344445
Q ss_pred HHhhccCChhhHHHHHHHHHHhCCCCchhHHHH----HHHHhHhCCChHHHHHHHhcccC--C---CcccHHHHHHHHHc
Q 039792 267 SACSMLQFVGGGKQIHAHVLRRGMGMDVSVINV----LMDFYSKCGRVKMARRLFDEIEV--K---NIISWTTLIGGYMQ 337 (819)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~ 337 (819)
..|-+.|+...|..-+..+.....+.|..-.-. .+..|...++-+.|.+.++.... . +...+|.++..|.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 678889999999999999988765434333333 35556677777889888887764 2 34568999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCc----------------------chHH----HHHHHhcCCcchhhHHHHHHHHHHcCC
Q 039792 338 NSFDREAMKLFTEMTRSGWKPDD----------------------FACS----SVLTSCGSVEALEQGRQVHAYSFKANI 391 (819)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~----------------------~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~g~ 391 (819)
...++.|......+......+|. ..|. .+.-++.+.+..+....+.....+..+
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 99999999999888762222222 1221 233345566666666677777777664
Q ss_pred CC--ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHH
Q 039792 392 ES--DNFVKNSLVDMYAKCDSLTEARKVFDVMAD----RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPG-LLTF 464 (819)
Q Consensus 392 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 464 (819)
.+ +...|.-+.++|...|++.+|..+|..+.. .+...|-.+..+|...|.+++|++.|+..... .|+ ...-
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~R 486 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDAR 486 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhh
Confidence 43 566788899999999999999999998875 45678999999999999999999999998764 333 3344
Q ss_pred HHHHHHhhccCchHhHHHHHHHHH--------HhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC------------
Q 039792 465 VSLLGLSSSVFSLESSKQIHGLII--------KYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ------------ 524 (819)
Q Consensus 465 ~~ll~~~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------ 524 (819)
.++-..+.+.|+.++|.+.+..+. ..+..|+....-...+.|...|+.++=..+-..|..
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~ 566 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRN 566 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 556667788899999999888854 234455666666667778888887664333322221
Q ss_pred --------------CCeeehhhhHHHHHhcCCHHHHH------HHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHH
Q 039792 525 --------------RDIVVWNAMLLGYTQQLENEEAI------KLYLELLLSQQRPNE--FTFAALITAASNLGSLKHGQ 582 (819)
Q Consensus 525 --------------~~~~~~~~li~~~~~~g~~~~A~------~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~ 582 (819)
....+....+.+-.+.++..... ..+.--...|+.-+. ..+.-++.++++.+++++|.
T Consensus 567 ~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl 646 (895)
T KOG2076|consen 567 KKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEAL 646 (895)
T ss_pred HHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 01111112222222222211111 011111112222222 23455667778888888888
Q ss_pred HHHHHHHHhCC--CCch---hHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----C---hHhHHHHHHHHHhCCChHHHHH
Q 039792 583 QFHNHLIKLGL--DFDS---FITSALIDMYAKCGSLEDAYETFGSTTWK-----D---VACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 583 ~~~~~~~~~~~--~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~li~~~~~~g~~~~A~~ 649 (819)
.+...+..... .++. ..-...+.+....+++..|.+.++.+... + ...||...+...++|+-.--..
T Consensus 647 ~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R 726 (895)
T KOG2076|consen 647 SVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLR 726 (895)
T ss_pred HHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777765322 1111 23344556666778888888888776633 3 3467766666666665444444
Q ss_pred HHHHHHHcCCCCCchhHHHHH--HHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHH-H-----hhccc----chhhh
Q 039792 650 LFREMIIEGLEPNYITFVGVL--SACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVS-L-----LGRNV----WNVEL 717 (819)
Q Consensus 650 ~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~-~-----l~r~~----w~~~~ 717 (819)
++..... ..|+......++ .-....+.+..|...+-.... ..|+...++..+. + ++|.. ..+-.
T Consensus 727 ~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~q 802 (895)
T KOG2076|consen 727 LIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQ 802 (895)
T ss_pred HHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4444332 334332222222 234456777778776544433 4455444443221 1 11110 03345
Q ss_pred HHHHHHHHHccCCC--CchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 718 GRYAAEMAISIDPM--DSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 718 a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
|.....+..++--. .-.+.+.++.+|-..|-..=|...+++..+..
T Consensus 803 G~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 803 GFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 55666666666443 56789999999999999999999999987643
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=4.1e-11 Score=118.43 Aligned_cols=470 Identities=11% Similarity=0.036 Sum_probs=289.2
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCCCC----C-eeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhH----HHH
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLMVK----T-AVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLL----SSV 265 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~----~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~l 265 (819)
+...|..-|.......+|+..++-+... | -..--.+-..+.+..++.+|+++|+.....-...+..+- +.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3344455566666677777777644321 1 111122345567777888888888766654333333333 333
Q ss_pred HHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC----------------CCcccHH
Q 039792 266 LSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV----------------KNIISWT 329 (819)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~ 329 (819)
--.+.+.|.++.|..-|+...+. .|+..+.-.|+-.+.--|+-++..+.|..|.. |+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 34467888999998888887765 35655555566666667888888888887741 1111111
Q ss_pred H-----HHHHHHcCC--ChhHHHHHHHHHHHCCCCCCcc-hHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHH
Q 039792 330 T-----LIGGYMQNS--FDREAMKLFTEMTRSGWKPDDF-ACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSL 401 (819)
Q Consensus 330 ~-----li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 401 (819)
- +++-.-+.. +.++++-.-.++..--+.||-. -|... .+.+..-.-..+..+.. -.-
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc-------------le~lk~s~~~~la~dle--i~k 425 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC-------------LESLKASQHAELAIDLE--INK 425 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH-------------HHHHHHhhhhhhhhhhh--hhH
Confidence 1 111111111 1122222222222211222211 01111 11111100000000111 111
Q ss_pred hhhhhcCCCHHHHHHHHHhcCCCCcchHHHHH-----HHHHh-cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 039792 402 VDMYAKCDSLTEARKVFDVMADRNVVSYNAMI-----EGYSK-EEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVF 475 (819)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li-----~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 475 (819)
..-|.+.|+++.|.++++-....|..+-++-. --|.+ -.++.+|...-+..... -+-+....+.--+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecC
Confidence 23467889999999998888776544332221 12222 23455665555443321 1111111111122334578
Q ss_pred chHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHH
Q 039792 476 SLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLE 552 (819)
Q Consensus 476 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 552 (819)
+++.|...+.+.....-......||. .-.+-+.|++++|+..|-++.. .+....-.+.+.|-...++..|++++.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999998887654444444442 2346778999999999987653 5666667778889999999999999977
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHh
Q 039792 553 LLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVAC 630 (819)
Q Consensus 553 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~ 630 (819)
.... ++.|+..++.|...|-+.|+-..|.+.+-.--+. ++.+..+...|...|....-+++|+..|++.. +|+..-
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 6653 5557788889999999999999999988766554 45588999999999999999999999999866 999999
Q ss_pred HHHHHHHH-HhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHH
Q 039792 631 WNSMICTN-AHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 631 ~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
|..||..| .+.|++++|+.+|+....+ +.-|...+..|+..|...|.- ++.++-+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHHH
Confidence 99998765 5679999999999999762 455667888899999888863 3344433
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.41 E-value=6.6e-08 Score=100.82 Aligned_cols=416 Identities=12% Similarity=0.044 Sum_probs=323.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHH
Q 039792 340 FDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFD 419 (819)
Q Consensus 340 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (819)
+...-.+++++.++. .|+.+.+. .+.....+.+.|+-++..+++.- +.+.. |.-+|.+..-++.|.++++
T Consensus 361 ~~~~K~RVlRKALe~--iP~sv~LW---KaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLN 430 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEH--IPRSVRLW---KAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHHh--CCchHHHH---HHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHH
Confidence 334445566666653 45554332 33344555666888887777642 22333 3445566777889999998
Q ss_pred hcCC---CCcchHHHHHHHHHhcCChhHHHHHHHH----HHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCC
Q 039792 420 VMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHE----MRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGV 492 (819)
Q Consensus 420 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 492 (819)
+..+ .+...|-+-...--.+|+.+...+++.+ +...|+..+..-+..=..+|...|..-.+..|....+..|+
T Consensus 431 kaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv 510 (913)
T KOG0495|consen 431 KAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV 510 (913)
T ss_pred HHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Confidence 8775 4677787777777788999988888776 46689999999999999999999999999999999998888
Q ss_pred ccc--hhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039792 493 FLD--VFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAA 567 (819)
Q Consensus 493 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 567 (819)
... ..++..-.+.|.+.+.++-|+.+|....+ .+...|...+..=-.+|..++...+|++.... ++-....|..
T Consensus 511 Eeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM 589 (913)
T KOG0495|consen 511 EEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLM 589 (913)
T ss_pred ccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHH
Confidence 643 45677777889999999999999998876 35567877777777789999999999999876 4445566667
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChH
Q 039792 568 LITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPM 645 (819)
Q Consensus 568 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 645 (819)
.....-..|++..|+.++..+.+..+. +..++-+-+........++.|+.+|.+.. .+....|.--+......++.+
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence 777778889999999999999998876 88899999999999999999999998876 677778877777777889999
Q ss_pred HHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCch-HHHHHHHHhhcccchhhhHHHHHH
Q 039792 646 KALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGME-HYASVVSLLGRNVWNVELGRYAAE 723 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~-~y~~li~~l~r~~w~~~~a~~~~~ 723 (819)
+|++++++.++ .-|+-. .|..+...+-+.++++.|.+.|..-.+ .-|... .|-.+.++=-+.+ ++-.|+..++
T Consensus 669 eA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~-~~~rAR~ild 743 (913)
T KOG0495|consen 669 EALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDG-QLVRARSILD 743 (913)
T ss_pred HHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhc-chhhHHHHHH
Confidence 99999999998 788864 688888899999999999998876544 234433 3444444444433 7889999999
Q ss_pred HHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEE
Q 039792 724 MAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIE 774 (819)
Q Consensus 724 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~ 774 (819)
++.-.+|+|+..|...+.+-.+.|.-+.|..+..+..+.- +..|.-|.|
T Consensus 744 rarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaE 792 (913)
T KOG0495|consen 744 RARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAE 792 (913)
T ss_pred HHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHH
Confidence 9999999999999999999999999999999888776532 334545543
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=9.2e-13 Score=134.52 Aligned_cols=250 Identities=17% Similarity=0.173 Sum_probs=103.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhc-CC----CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039792 501 ALIDAYSKCFSNKDARLVFDEM-NQ----RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNL 575 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 575 (819)
.+...+.+.|++++|.+++++. .. .|...|..+.......+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466777888888888888543 22 24556666666677788899999999988875432 44456666665 688
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChHhHHHHHHHHHhCCChHHHHHH
Q 039792 576 GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-----WKDVACWNSMICTNAHHGEPMKALLL 650 (819)
Q Consensus 576 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 650 (819)
+++++|..+.....+.. +++..+..++..|.+.|+++++.++++... ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88999988887766543 456677788888999999999999888743 45677888899999999999999999
Q ss_pred HHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCc-hHHHHHHHHhhcccchhhhHHHHHHHHHc
Q 039792 651 FREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGM-EHYASVVSLLGRNVWNVELGRYAAEMAIS 727 (819)
Q Consensus 651 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~-~~y~~li~~l~r~~w~~~~a~~~~~~~~~ 727 (819)
+++.++ ..|+. .....++..+...|+.+++.++++...+ ..-.|.. ..++.....+| +.+.|...++++++
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg----~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG----RYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-----HHHHHHHHHHHHH
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc----cccccccccccccc
Confidence 999998 78864 5688889999999999999999988887 3333332 23333334444 77999999999999
Q ss_pred cCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 728 IDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 728 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
..|+|+.....++.++...|+.++|.+++++..
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HSTT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999998764
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.37 E-value=2.2e-12 Score=131.70 Aligned_cols=253 Identities=16% Similarity=0.138 Sum_probs=110.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH-HHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCCh
Q 039792 434 EGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLL-GLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSN 512 (819)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 512 (819)
..+.+.|++++|++++++-.....+|+...|..++ ..+...++.+.+...++.+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 33444455555555554333222223333333322 2333445555555555555544333 44556666666 678888
Q ss_pred HHHHHHHHhcCC--CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 039792 513 KDARLVFDEMNQ--RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQ-QRPNEFTFAALITAASNLGSLKHGQQFHNHLI 589 (819)
Q Consensus 513 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 589 (819)
++|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|...++..+
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888776543 566777888888999999999999999977532 34567778888888899999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chh
Q 039792 590 KLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YIT 665 (819)
Q Consensus 590 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 665 (819)
+..+. |..+.+.++..+...|+.+++.++++... +.|...|..+..+|...|+.++|+..|++..+ ..|+ ..+
T Consensus 174 ~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~ 250 (280)
T PF13429_consen 174 ELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLW 250 (280)
T ss_dssp HH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHH
T ss_pred HcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccccccc
Confidence 98765 78888999999999999999777776554 56777889999999999999999999999988 6675 467
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...+..++...|+.++|.++..+...
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 78888899999999999998877643
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=7.4e-11 Score=123.37 Aligned_cols=254 Identities=14% Similarity=0.110 Sum_probs=175.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC------CCeeehhhhHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ------RDIVVWNAMLLGYTQQLENEEAIKLYL-ELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~ 570 (819)
+...+..+|...+++++|.++|+.+.+ .+...|.+.+--+-. +-++..+. ++.+. -+-.+.||..+-+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~GN 429 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALGN 429 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhcc
Confidence 334455555555555555555555543 233344444332221 12222222 22221 2334567777777
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChH---hHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVA---CWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 647 (819)
+++-.++.+.|.+.|++.++.++. ....|+.+..-+.....+|.|...|+.....|+. .|--|...|.+.++++.|
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence 777777777777777777765543 5667777777777777888888888887765555 455567788999999999
Q ss_pred HHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcC-Ccc-CchHHHHHHHHhhcccchhhhHHHHHHH
Q 039792 648 LLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFG-IEP-GMEHYASVVSLLGRNVWNVELGRYAAEM 724 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~ 724 (819)
.-.|++..+ +.|. .+....+...+-+.|+.|+|++++++..... -.| ...+-+.++-.++ +.+.|.+.+|+
T Consensus 509 e~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~----~~~eal~~LEe 582 (638)
T KOG1126|consen 509 EFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG----RYVEALQELEE 582 (638)
T ss_pred HHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc----chHHHHHHHHH
Confidence 999999988 8885 4677778888999999999999999987622 222 1233344444555 67889999999
Q ss_pred HHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 725 AISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 725 ~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
+.++.|+++..|.+++.+|-+.|+.+.|..-+.-|.+..
T Consensus 583 Lk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 583 LKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 999999999999999999999999999999988887643
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.3e-08 Score=100.22 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=183.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCc--cchhhHHHHHHHHHhcCC
Q 039792 434 EGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVF--LDVFAGSALIDAYSKCFS 511 (819)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~ 511 (819)
.++....+.++++.-.......|.+-+...-+....+.-...++++|+.+|+.+.+..+- -|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 445555567777777777777777666666665666666778888888888888876432 356666665544333333
Q ss_pred hHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 039792 512 NKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE-FTFAALITAASNLGSLKHGQQFHNHLIK 590 (819)
Q Consensus 512 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 590 (819)
+.---.....+.+--+.|..++.+-|.-.++.++|...|++..+. .|.. ..|+.+-.-+....+...|.+-++.+++
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 322222222333445667777778888888888888888888763 4443 4566666677888888888888888888
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHH
Q 039792 591 LGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFV 667 (819)
Q Consensus 591 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 667 (819)
.++. |-..|-.|..+|.-.+...-|.-.|++.. +.|...|.+|..+|.+.++.++|++.|.+....| ..+...+.
T Consensus 393 i~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 393 INPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred cCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 7765 77888888888888888888888888765 5578888888888888888888888888888754 33556788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 039792 668 GVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.|...|-+.++.++|.++|.+-++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888888888888877665
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=6.3e-10 Score=106.06 Aligned_cols=311 Identities=14% Similarity=0.114 Sum_probs=188.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccc---hhhHHHHHHHHHhcCChHH
Q 039792 438 KEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLD---VFAGSALIDAYSKCFSNKD 514 (819)
Q Consensus 438 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~ 514 (819)
-+++.++|.++|-+|.+. -+.+..+-.++-+.+.+.|..+.|.++|..+.++.--+. ....-.|..-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D--------- 116 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD--------- 116 (389)
T ss_pred hhcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH---------
Confidence 357889999999999863 222233444555666666777777777766655321111 1111223333
Q ss_pred HHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 039792 515 ARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 515 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
|...|-++.|..+|..+.+.| .--......|+..|-...++++|.++-..+.+.+.+
T Consensus 117 ----------------------ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 117 ----------------------YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred ----------------------HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 444555555555555554432 112234445555555555555555555555554443
Q ss_pred Cch----hHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hh
Q 039792 595 FDS----FITSALIDMYAKCGSLEDAYETFGSTTWK---DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--IT 665 (819)
Q Consensus 595 ~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t 665 (819)
+.. ..|.-|...+.-..+++.|..++.+.... .+..=-.+...+...|+++.|++.++...+. .|+. .+
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~ev 251 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEV 251 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHH
Confidence 321 12334444555556667777777665522 2333334556677778888888888888873 4553 46
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh--cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAG--FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
...|..+|.+.|+.+++...+..+.+ .|..+....|..+...-| .+.|.....+-+...|.--+.|-.+-.-.
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G-----~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEG-----IDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhC-----hHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 77788888888888888888888877 343333333333333223 24555556666677776555555544434
Q ss_pred H--hCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCC
Q 039792 744 A--CNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKS 788 (819)
Q Consensus 744 ~--~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~ 788 (819)
. ..|+|.+...+.+.|....++..|-+..-..+-+.|.|.+.=++
T Consensus 327 ~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CPs 373 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCPS 373 (389)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCCC
Confidence 3 34779999999999999999999999999999999999985444
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.5e-09 Score=108.53 Aligned_cols=355 Identities=13% Similarity=0.101 Sum_probs=253.4
Q ss_pred CCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH--HHHH
Q 039792 391 IESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTF--VSLL 468 (819)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll 468 (819)
...|.+.+-...-.+.+.|....|+..|......-+..|.+-+.-..-..+.+.+. ... .|.+.|...+ -.+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~-~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILV-VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHH-hcCcccchHHHHHHHH
Confidence 34444433333344566788888888888776544444554443322222222222 111 1222222222 1234
Q ss_pred HHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCC------eeehhhhHHHHHhcCC
Q 039792 469 GLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRD------IVVWNAMLLGYTQQLE 542 (819)
Q Consensus 469 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~ 542 (819)
.++....+.+++.+=.......|+..+...-+....+.-...+++.|+.+|+++.+.| ..+|...+ |.++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 5566666778888888888888888777777777777788899999999999998744 44555443 333332
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 543 NEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
..+..+.+-...--+--+.|..++.+-++-.++.++|..+|+...+.++. ....|+.+.+-|....+...|.+-+++
T Consensus 313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22233332222112333456677777788888999999999999998876 778899999999999999999999987
Q ss_pred CC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCc
Q 039792 623 TT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGM 698 (819)
Q Consensus 623 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 698 (819)
.. +.|-..|-.|.++|...+...=|+-.|++..+ ++|++ ..|.+|..+|.+.++.++|++.|+.....|.. +.
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 66 66888999999999999999999999999998 89965 78999999999999999999999999986544 44
Q ss_pred hHHHHHHHHhhcccchhhhHHHHHHHHHc-------cCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 699 EHYASVVSLLGRNVWNVELGRYAAEMAIS-------IDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 699 ~~y~~li~~l~r~~w~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
..|..+.+++-+-. +.+.|.+.+++-++ .+|+-..+-.-|+.-+.+.++|++|...-...
T Consensus 467 ~~l~~LakLye~l~-d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 467 SALVRLAKLYEELK-DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 56777777776543 77888888888887 44555556667899999999999999876543
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=6.9e-08 Score=100.51 Aligned_cols=517 Identities=14% Similarity=0.163 Sum_probs=308.6
Q ss_pred CCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHH-CCCCCChhhHHHHH
Q 039792 188 GFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRE-TDVVHDKYLLSSVL 266 (819)
Q Consensus 188 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll 266 (819)
+..|+...|-.+-+. ++.+.....+|| ..|-.-+.-+.++|+.......|+.... ..+......|...|
T Consensus 76 ~~~~T~~~~~~vn~c------~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC------FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHH------HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 445665556555444 345566666665 4687778888889999999888887654 34445556777888
Q ss_pred HHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcc----------cHHHHHHHHH
Q 039792 267 SACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNII----------SWTTLIGGYM 336 (819)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~ 336 (819)
......+-.+.+..+++..++. ++...+-.|..+++.+++++|-+.+..+...+.. .|+-+-...+
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 8888888888888888887765 3444677778888888888888888887754332 2443333333
Q ss_pred cCCChhHHHH---HHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHH
Q 039792 337 QNSFDREAMK---LFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTE 413 (819)
Q Consensus 337 ~~g~~~~A~~---~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 413 (819)
++-+.-..+. +++.+.. .-||.. ...+++|.+-|.+.|.++.
T Consensus 222 ~~p~~~~slnvdaiiR~gi~--rftDq~---------------------------------g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 222 QNPDKVQSLNVDAIIRGGIR--RFTDQL---------------------------------GFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred hCcchhcccCHHHHHHhhcc--cCcHHH---------------------------------HHHHHHHHHHHHHhhhhHH
Confidence 3322211111 1111111 112211 2345566666666666666
Q ss_pred HHHHHHhcCC--CCcchHHHHHHHHHhc----------------CC------hhHHHHHHHHHHhCC-----------CC
Q 039792 414 ARKVFDVMAD--RNVVSYNAMIEGYSKE----------------EK------LSEALDLFHEMRVGF-----------VP 458 (819)
Q Consensus 414 A~~~~~~m~~--~~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g-----------~~ 458 (819)
|..+|++... -.+.-|..+.++|++- ++ ++-.+.-|+.+...+ -+
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 6666655332 1222233333333221 11 112222333332211 11
Q ss_pred CChhHHHHHHHHhhccCchHhHHHHHHHHHHh-CC----ccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCee-----
Q 039792 459 PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY-GV----FLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIV----- 528 (819)
Q Consensus 459 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----- 528 (819)
-+..++..-. -...|+..+....+.++++. .+ ..-...+..+.+.|-..|+++.|+.+|++..+-+-.
T Consensus 347 ~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 347 HNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred ccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 1112222111 12234445555556655542 11 112345778889999999999999999998874433
Q ss_pred --ehhhhHHHHHhcCCHHHHHHHHHHHHHCC----------CCC-------CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 039792 529 --VWNAMLLGYTQQLENEEAIKLYLELLLSQ----------QRP-------NEFTFAALITAASNLGSLKHGQQFHNHLI 589 (819)
Q Consensus 529 --~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------~~p-------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 589 (819)
+|..-...=.++.+++.|+++.+.....- -.| +...|...++.-...|-++..+.+++.++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444456778899999887764311 111 22345556666677789999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChH-hHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCC
Q 039792 590 KLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT----WKDVA-CWNSMICTNAHH---GEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 590 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p 661 (819)
+..+. ++.+.....-.+....-++++.+++++.. .|++. .|++.+.-+.+. -..+.|..+|++.++ |..|
T Consensus 505 dLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 505 DLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 98775 44444444555666777999999999876 45553 788877666543 368999999999998 7888
Q ss_pred CchhHHHHHH--HHHccCCHHHHHHHHHHHHhcCCccC--chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc--hh
Q 039792 662 NYITFVGVLS--ACSHAGLIEDGLDHFQSMAGFGIEPG--MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS--GS 735 (819)
Q Consensus 662 ~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~--~~ 735 (819)
...-+..|+- .=..-|....|++++++... ++.+. ...|+..|.--.. +.-+..-+.+++++++.-|++- ..
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae-~yGv~~TR~iYekaIe~Lp~~~~r~m 660 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAE-IYGVPRTREIYEKAIESLPDSKAREM 660 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH-HhCCcccHHHHHHHHHhCChHHHHHH
Confidence 6543333332 33356899999999999654 33332 3445554431111 1123445667888888877643 34
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH
Q 039792 736 YTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 736 ~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
-...+.+-.+.|..+.|..++.--
T Consensus 661 clrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 661 CLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhh
Confidence 455677777788888888887644
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.33 E-value=9.1e-10 Score=117.78 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT 637 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 637 (819)
+......+..++...|+.+.|..++....+... +.... ++......|+.+++.+..++.. +.|...+.++...
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl 337 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL 337 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 444444555555555555555555555544222 22111 1122223355555555544433 2233344455555
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
+...|++++|.+.|+++.+ ..|+..++..+..++.+.|+.++|.+++++-
T Consensus 338 ~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 338 LMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555 4555555555555555555555555555544
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.32 E-value=9.3e-10 Score=117.69 Aligned_cols=219 Identities=10% Similarity=0.053 Sum_probs=113.4
Q ss_pred HHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH
Q 039792 503 IDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE-------FTFAALITAA 572 (819)
Q Consensus 503 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~ 572 (819)
...+...|+.+.|...++++.+ | ++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666665544 2 3344555566666666677777666666665443222 1222222222
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFR 652 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 652 (819)
....+.+...++++.+.+.- +.++.....+...+...|+.++|.+++++..+.....--.++.+....++.+++++..+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 22333333344444332221 22455555555555566666666555554442111111112233334455555555555
Q ss_pred HHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCC
Q 039792 653 EMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPM 731 (819)
Q Consensus 653 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~ 731 (819)
+..+ -.|+.. .+..+...|.+.|++++|.+. ++++++..|+
T Consensus 319 ~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~------------------------------------le~al~~~P~ 360 (398)
T PRK10747 319 QQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLA------------------------------------FRAALKQRPD 360 (398)
T ss_pred HHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHH------------------------------------HHHHHhcCCC
Confidence 5554 345443 344555555555555555555 5555566665
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 732 DSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 732 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+ ..+..|+.++.+.|+.++|.+.+++-..
T Consensus 361 ~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 361 A-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 4566788888888888888888776543
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=1.5e-07 Score=94.52 Aligned_cols=427 Identities=12% Similarity=0.143 Sum_probs=272.4
Q ss_pred hcCChhHHHHHHhcCCC---CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHH
Q 039792 205 KNGSVDDAKFVFDGLMV---KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQI 281 (819)
Q Consensus 205 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 281 (819)
..+++..|+.+|++... ++...|-.-+..-.++..+..|..++++....=...|..=| --+-.--..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 45677888899987743 45667777788888889999999999988764333333322 223333456888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 039792 282 HAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE--VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPD 359 (819)
Q Consensus 282 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 359 (819)
|+.-.+ ..|+...|++.|++=.+-..++.|..++++.. .|++.+|--..+-=-++|....|..+|+...+. --|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 887654 57888888888888888888888888888865 688888888777778888888888888887653 112
Q ss_pred cch----HHHHHHHhcCCcchhhHHHHHHHHHHcCCCCC-hhHHhHHhhhhhcCCCHHHHHHH--------HHhcCCC--
Q 039792 360 DFA----CSSVLTSCGSVEALEQGRQVHAYSFKANIESD-NFVKNSLVDMYAKCDSLTEARKV--------FDVMADR-- 424 (819)
Q Consensus 360 ~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~-- 424 (819)
... |++....=.+....+.|.-++..++..-.... ...|..+...=-+.|+....... ++.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 222 22222223345566777777777666432221 23344444333333433222221 1111111
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHH
Q 039792 425 -NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLL-TFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSAL 502 (819)
Q Consensus 425 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 502 (819)
|-.+|-..+..-...|+.+...++|++.... ++|-.. .| + ...+|--+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~-------------------W----------~RYIYLWi 369 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRY-------------------W----------RRYIYLWI 369 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHH-------------------H----------HHHHHHHH
Confidence 2334444444444455555555555555432 333110 00 0 00011101
Q ss_pred ---HHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039792 503 ---IDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLG----YTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAA 572 (819)
Q Consensus 503 ---i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 572 (819)
+-.-....+++.+.++|+...+ | ...||.-+--. -.++.+...|.+++-..+ |.-|-..+|...|..-
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelE 447 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELE 447 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHH
Confidence 1111234566666777765554 2 23344433222 345677888888877655 5678889999999988
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCC----hHhHHHHHHHHHhCCChHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WKD----VACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A 647 (819)
.+.+.++.+..+++..+..++. +..+|.-....-...|+.+.|..+|+-.. +|. ...|.+.|.--...|.+++|
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 9999999999999999998876 78888888888889999999999998665 442 34788888888888999999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHH
Q 039792 648 LLLFREMIIEGLEPNYITFVGVLS 671 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~~t~~~ll~ 671 (819)
..+++++++ ..+....|.+...
T Consensus 527 R~LYerlL~--rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 527 RALYERLLD--RTQHVKVWISFAK 548 (677)
T ss_pred HHHHHHHHH--hcccchHHHhHHH
Confidence 999999988 3344444544443
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=5.4e-10 Score=117.03 Aligned_cols=272 Identities=15% Similarity=0.070 Sum_probs=136.2
Q ss_pred CHHHHHHHHHhcCC--CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChhHHHHHHHHhhccCchHhHHHHH
Q 039792 410 SLTEARKVFDVMAD--RNVV-SYNAMIEGYSKEEKLSEALDLFHEMRVGF--VPPGLLTFVSLLGLSSSVFSLESSKQIH 484 (819)
Q Consensus 410 ~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 484 (819)
+..+|...|.+.++ .|+. ....+..+|...+++++|.++|+..++.. ..-+..+|.+.|-.+-+.- .--.+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHHHHH
Confidence 34566666666443 2333 22334456666666666666666665431 1123344444443221110 000111
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCC---CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC-
Q 039792 485 GLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQR---DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP- 560 (819)
Q Consensus 485 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 560 (819)
..+++. -+-.+.+|.++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 111111 1224555666666666666666666666655542 234444444445555556666666655442 112
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT 637 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 637 (819)
+-..|..+...|.+.++++.|+-.|+.+.+.++. +.++...+...+.+.|+.++|+.++++.. .+|+.+---.+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 1233444445555666666666666666555544 45555555556666666666666665543 3444444444555
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-|.
T Consensus 567 l~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 5555666666666666655 55554 334445555666666555555554443
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=1.9e-09 Score=116.07 Aligned_cols=130 Identities=10% Similarity=-0.066 Sum_probs=74.6
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhH---HHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITF---VGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYA 702 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~ 702 (819)
++..+..+...+...|+.++|.+++++..+ ..||.... ..........++.+.+.+.+++..+ ....|+.....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 555666666666666666666666666665 34544321 1111122334556666666666555 33333211112
Q ss_pred HHHHHhhcccchhhhHHHHHH--HHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 703 SVVSLLGRNVWNVELGRYAAE--MAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 703 ~li~~l~r~~w~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
++..++-+.+ +.+.|+..++ ++++..|++. .+..|+.++.+.|+.++|.+++++-.
T Consensus 340 sLg~l~~~~~-~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 340 ALGQLLMKHG-EFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcc-cHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222222222 5566666667 4666677544 46699999999999999999998754
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.26 E-value=2.6e-09 Score=114.98 Aligned_cols=287 Identities=11% Similarity=0.012 Sum_probs=169.1
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCcchH-HHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHH
Q 039792 337 QNSFDREAMKLFTEMTRSGWKPDDFAC-SSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEAR 415 (819)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 415 (819)
..|+++.|.+.+.+..+. .|+...+ .....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 345566666655554432 2332222 2222334455555666655555544332222223333456666677777777
Q ss_pred HHHHhcCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCC
Q 039792 416 KVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGV 492 (819)
Q Consensus 416 ~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 492 (819)
..++.+.+ | +...+..+...+.+.|++++|.+.+..+.+.++.+.......-..
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~----------------------- 230 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK----------------------- 230 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----------------------
Confidence 77777654 2 444566777777778888888888777776654322211110000
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---H
Q 039792 493 FLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTF---A 566 (819)
Q Consensus 493 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 566 (819)
.+..++..-......+...+.++..++ .++..+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 231 -----a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 231 -----AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred -----HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 011111111112223344444544443 35666777777888888888888888888775 3443321 1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhc--CC--CCChHhHHHHHHHHHh
Q 039792 567 ALITAASNLGSLKHGQQFHNHLIKLGLDFDS--FITSALIDMYAKCGSLEDAYETFGS--TT--WKDVACWNSMICTNAH 640 (819)
Q Consensus 567 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~--~~--~~~~~~~~~li~~~~~ 640 (819)
...-.....++.+.+.+.++...+..+. |+ ....++...+.+.|++++|.+.|+. .. .||...+..+...+.+
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111223346777788888877776544 55 6677888888999999999999983 42 6787778888888999
Q ss_pred CCChHHHHHHHHHHHH
Q 039792 641 HGEPMKALLLFREMII 656 (819)
Q Consensus 641 ~g~~~~A~~~~~~m~~ 656 (819)
.|+.++|.+++++...
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999998888654
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.5e-08 Score=102.62 Aligned_cols=265 Identities=10% Similarity=0.012 Sum_probs=194.3
Q ss_pred CccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCC---eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039792 492 VFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRD---IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAAL 568 (819)
Q Consensus 492 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 568 (819)
..-++.+.....+-+...+++.+..++++...+.| ...+..-|.++...|+..+-+.+=.+|.+. .+-.+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 33455566666777778888999999888887644 345555567788888888888777788775 45566788888
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChH
Q 039792 569 ITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPM 645 (819)
Q Consensus 569 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 645 (819)
.--|...|+.++|++++......+.. -...|-.+...|+-.|.-+.|...+.... +.....+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 87777889999999999888765544 34567788888888888888887665433 111112223445677788899
Q ss_pred HHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh--cCCccCchHHHHHHHHhhcc---cchhhhHH
Q 039792 646 KALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG--FGIEPGMEHYASVVSLLGRN---VWNVELGR 719 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~p~~~~y~~li~~l~r~---~w~~~~a~ 719 (819)
.|.+.|.+... +.|+. ...+-+.-...+.+.+.+|..+|+..+. ..+.+....|..+...+|.. .-..+.|.
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999988876 88865 5566666666678889999999988875 34444444566666666543 12677888
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 720 YAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 720 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
..+++++.+.|.++.+|..++-+|...|+.+.|...+.+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 88999999999999999999999999999999998888664
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=3.6e-07 Score=91.87 Aligned_cols=428 Identities=10% Similarity=0.064 Sum_probs=255.2
Q ss_pred CCChHHHHHHHhccc---CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch-HHHHHHHhcCCcchhhHHHH
Q 039792 307 CGRVKMARRLFDEIE---VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFA-CSSVLTSCGSVEALEQGRQV 382 (819)
Q Consensus 307 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~ 382 (819)
.+++..|..+|++.. .+++..|--.+..=.++..+..|..++++... +-|...- +---+-.=-..|++..|+++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 445555666666544 23445555555555666666666666666554 2332211 11111111234666666666
Q ss_pred HHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-C-CC
Q 039792 383 HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMA--DRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVG-F-VP 458 (819)
Q Consensus 383 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~ 458 (819)
|+.-.+ ..|+...+++.|+.=.+-..++.|+.++++.. .|++.+|--...--.++|....|..+|....+. | -.
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 665554 45667777777777777777777777776643 466666666666666677776666666665432 1 01
Q ss_pred CChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc-chhhHHHHHHHHHhcCChHHHHHH--------HHhcCCC---C
Q 039792 459 PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL-DVFAGSALIDAYSKCFSNKDARLV--------FDEMNQR---D 526 (819)
Q Consensus 459 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~---~ 526 (819)
-+...|.+...-=.....++.+.-++...++.-... ....|......--+-|+....... ++.+... |
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 111223333333334556777777777776654332 234444444444444554333222 2222222 4
Q ss_pred eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHH---HHHHhccCChHHHHHHHHHHHHhCCCCc
Q 039792 527 IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEF-------TFAAL---ITAASNLGSLKHGQQFHNHLIKLGLDFD 596 (819)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~ 596 (819)
-.+|--.++.--..|+.+...++|++.+.. ++|-.. .|.-+ +-.-....+.+.+.++++..++. ++..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 456666777777788999999999988865 555321 11111 11124567888899999888873 2223
Q ss_pred hhHHHHH----HHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHH
Q 039792 597 SFITSAL----IDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGV 669 (819)
Q Consensus 597 ~~~~~~l----i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 669 (819)
..++.-+ ...-.++.++..|.+++.... .|...++...|..-.+.++++....++++.++ ..|. ..+|...
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHH
Confidence 4444433 333457788999999988766 66677788888888888999999999999988 7774 4678888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcC-CccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHH
Q 039792 670 LSACSHAGLIEDGLDHFQSMAGFG-IEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFA 744 (819)
Q Consensus 670 l~a~~~~g~~~~a~~~~~~m~~~g-~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 744 (819)
...=...|+.|.|..+|.-.+..+ +..-...+-.-||.=-..+ .++.++..++++++..+.. .+|+..+.--+
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~-E~ekaR~LYerlL~rt~h~-kvWisFA~fe~ 551 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEG-EFEKARALYERLLDRTQHV-KVWISFAKFEA 551 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcc-hHHHHHHHHHHHHHhcccc-hHHHhHHHHhc
Confidence 887888899999999998887622 2111222333332221111 6778888888888877643 37777776655
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=2.3e-11 Score=86.46 Aligned_cols=50 Identities=26% Similarity=0.576 Sum_probs=47.5
Q ss_pred CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 039792 222 KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSM 271 (819)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 271 (819)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.5e-11 Score=85.49 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=46.1
Q ss_pred CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc
Q 039792 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH 675 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 675 (819)
||+++||++|.+|+++|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=3.5e-08 Score=97.53 Aligned_cols=290 Identities=13% Similarity=0.090 Sum_probs=178.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHH
Q 039792 338 NSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKV 417 (819)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 417 (819)
.|++..|.++..+-.+.+-.| ...|..-..+....|+.+.+-..+.++.+.--.++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544433222 1223333344455566666666666555543344555555666666777777777766
Q ss_pred HHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc
Q 039792 418 FDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL 494 (819)
Q Consensus 418 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 494 (819)
.++..+ .+.........+|.+.|++.+...++.+|.+.|.-.|+..- ++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 665443 56677778888888888888888888888887765443211 00
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+-.+++..|+. ..+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 122334444444444444444445555543 34555556667777788888888888887777666662 22234
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
+.+.++.+.-.+..+...+..+. ++..+.+|...|.+.+.+.+|.+.|+... .|+...|+.+..++.+.|+.++|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 56677777777766666655433 55677777777777777777777777655 5667777777777777777777777
Q ss_pred HHHHHHHcCCCC
Q 039792 650 LFREMIIEGLEP 661 (819)
Q Consensus 650 ~~~~m~~~g~~p 661 (819)
.+++.+..-..|
T Consensus 383 ~r~e~L~~~~~~ 394 (400)
T COG3071 383 VRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHhcCC
Confidence 777665433333
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=7.7e-08 Score=97.11 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 039792 499 GSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP-NEFTFAALITAASN 574 (819)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 574 (819)
|--+..+|....+.++.+..|+...+ .|+.+|..-...+.-.+++++|..=|++.++. .| +...|..+--+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHH
Confidence 33344455555555556666655543 24445554455555556666777767666652 33 33444444444456
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC-------hH--hHHHHHHHHHhCCC
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKD-------VA--CWNSMICTNAHHGE 643 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-------~~--~~~~li~~~~~~g~ 643 (819)
.+.++++...|+..++.- +..+.+|+.....+...+++++|.+.|+... .|+ .. .-..++..- -.++
T Consensus 441 ~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 667777777777776653 3366777777777777777777777777554 222 11 111222111 2388
Q ss_pred hHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 644 PMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+.+|++++.+..+ +.|- ...|.+|...-.+.|+.++|+++|++-..
T Consensus 519 ~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8999999999988 7885 46899999999999999999999988766
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=2e-06 Score=92.14 Aligned_cols=368 Identities=15% Similarity=0.077 Sum_probs=245.0
Q ss_pred cCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHH
Q 039792 389 ANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPG-LLTF 464 (819)
Q Consensus 389 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 464 (819)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|..++++-....-.|+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888999999999999999999999998764 3456899999999999999999999998754433344 4444
Q ss_pred HHHHHHhh-ccCchHhHHHHHHHHHHh--CC--ccchhhHHHHHHHHHhc-----------CChHHHHHHHHhcCCCCee
Q 039792 465 VSLLGLSS-SVFSLESSKQIHGLIIKY--GV--FLDVFAGSALIDAYSKC-----------FSNKDARLVFDEMNQRDIV 528 (819)
Q Consensus 465 ~~ll~~~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 528 (819)
...-..|. +.+..+++..+-..+++. +. ......|-.+.-+|... ....++...+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44445554 456777777777766652 11 12344444444444322 1234566677776543222
Q ss_pred ehhh---hHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCC----------
Q 039792 529 VWNA---MLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL-GLD---------- 594 (819)
Q Consensus 529 ~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~---------- 594 (819)
-++. +.--|+..++.+.|++..++..+-+-.-+...|..+.-.++..+++.+|+.+.+..... |..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2222 33347777889999999999988766778888888888888889999999888776642 210
Q ss_pred --------CchhHHHHHHHHHHh------cCCHHHHHHHHhc----------------------------------CC--
Q 039792 595 --------FDSFITSALIDMYAK------CGSLEDAYETFGS----------------------------------TT-- 624 (819)
Q Consensus 595 --------~~~~~~~~li~~~~~------~g~~~~A~~~~~~----------------------------------~~-- 624 (819)
-...+...++...-. .|+-....+.+.. ++
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 011122222222210 0000011111110 01
Q ss_pred ----CCC------hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh--
Q 039792 625 ----WKD------VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-- 691 (819)
Q Consensus 625 ----~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-- 691 (819)
.|+ ...|......+...++.++|...+.+..+ +.|-. ..|......+...|.+++|.+.|.....
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 111 12455666778888999999988888876 66754 4566666788889999999999988876
Q ss_pred cCCccCchHHHHHHHHhhcccchhhhHHH--HHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 692 FGIEPGMEHYASVVSLLGRNVWNVELGRY--AAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 692 ~g~~p~~~~y~~li~~l~r~~w~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.+..|.....+-++.-.| +-..+.. +...+++++|.|+.+|..|+.++-+.|+.++|.+-|+...+.
T Consensus 715 P~hv~s~~Ala~~lle~G----~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELG----SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCcHHHHHHHHHHHHhC----CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 233333333333444444 3344444 899999999999999999999999999999999999987654
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=9.1e-06 Score=85.22 Aligned_cols=538 Identities=12% Similarity=0.085 Sum_probs=287.9
Q ss_pred hhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHH
Q 039792 103 LDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHS 182 (819)
Q Consensus 103 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 182 (819)
++.+..+..+|| ..|-.-+.-+..+|+...-...|...++.-.+.-....+.-.++.....+-++.+....+..
T Consensus 91 ~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY-- 164 (835)
T KOG2047|consen 91 FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY-- 164 (835)
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH--
Confidence 345555556665 35666666677788888888888777666666666666766666666665554222222222
Q ss_pred HHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCC----------CeeeHHHHHHHHHhcCCchh---HHHHHHH
Q 039792 183 FVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVK----------TAVSWTTIITGYVKSGRSDL---SLNLFNQ 249 (819)
Q Consensus 183 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~----------~~~~~~~li~~~~~~g~~~~---A~~~~~~ 249 (819)
+..++..-+--|..+++.+++++|.+.+...... +--.|.-+-...+++.+.-. ...+++.
T Consensus 165 ------Lk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 165 ------LKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred ------HhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 2334444666777777788888887777665322 22345555444444433222 2222222
Q ss_pred HHHCCCCCChh--hHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHH-hc--c-cCC
Q 039792 250 MRETDVVHDKY--LLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLF-DE--I-EVK 323 (819)
Q Consensus 250 m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~--~-~~~ 323 (819)
+.. .-+|.. .|.+|.+-|.+.|.++.|+.++++.+..-. ++.-++.+.++|+....-.-+..+= .. - .+.
T Consensus 239 gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~e 314 (835)
T KOG2047|consen 239 GIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEE 314 (835)
T ss_pred hcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChh
Confidence 221 223322 345555555555555555555555544321 2222333334443221111000000 00 0 000
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCC--------CCCCcchHHHHHHH-hcCCcchhhHHHHHHHHHHcCCCC-
Q 039792 324 NIISWTTLIGGYMQNSFDREAMKLFTEMTRSG--------WKPDDFACSSVLTS-CGSVEALEQGRQVHAYSFKANIES- 393 (819)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~- 393 (819)
+.. +++-.+.-|+.+...+ +..|+......++- -...|+..+-...+.++++. +.|
T Consensus 315 d~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ 380 (835)
T KOG2047|consen 315 DDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPK 380 (835)
T ss_pred hhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcc
Confidence 111 1222333344443321 01111111111111 12234455555666666653 222
Q ss_pred -----ChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcc-------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 039792 394 -----DNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVV-------SYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGL 461 (819)
Q Consensus 394 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 461 (819)
-...+..+.+.|-..|+++.|+.+|++..+-+-. .|-.-...-.++.+++.|+++.+... ..|..
T Consensus 381 ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~---~vP~~ 457 (835)
T KOG2047|consen 381 KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT---HVPTN 457 (835)
T ss_pred cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh---cCCCc
Confidence 2346778889999999999999999998764332 34444455556777788888766653 23322
Q ss_pred hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHH---HH
Q 039792 462 LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLG---YT 538 (819)
Q Consensus 462 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~ 538 (819)
.. +.. ...+...++ .+| -+..+|+..++.--..|-++....+++++.+--+.|=..+++- +-
T Consensus 458 ~~----~~~-yd~~~pvQ~-rlh---------rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE 522 (835)
T KOG2047|consen 458 PE----LEY-YDNSEPVQA-RLH---------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE 522 (835)
T ss_pred hh----hhh-hcCCCcHHH-HHH---------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11 111 111111111 111 1445566666777777888888888888876444433333322 33
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---ccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCC
Q 039792 539 QQLENEEAIKLYLELLLSQQRPNE-FTFAALITAAS---NLGSLKHGQQFHNHLIKLGLDFDSF--ITSALIDMYAKCGS 612 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~ 612 (819)
.+.-++++.++|++-+..--.|+. ..|+..+.-+. ....++.|+.+|++.++ |.+|.-. +|-.....-.+-|-
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhH
Confidence 455678888888765543223554 23444444432 23478999999999998 4444322 12222233345688
Q ss_pred HHHHHHHHhcCCCC-----ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHH---HHHHccCCHHHHHH
Q 039792 613 LEDAYETFGSTTWK-----DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL---SACSHAGLIEDGLD 684 (819)
Q Consensus 613 ~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~a~~~~g~~~~a~~ 684 (819)
...|..++++.... -...||..|.--+..=-+.....+|++.++ .-||...-...+ ..=++.|.++.|..
T Consensus 602 ar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARa 679 (835)
T KOG2047|consen 602 ARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARA 679 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 88899999887622 234788887655544445556778888888 578765433333 34567899999998
Q ss_pred HHHHHHh
Q 039792 685 HFQSMAG 691 (819)
Q Consensus 685 ~~~~m~~ 691 (819)
++..-.+
T Consensus 680 Iya~~sq 686 (835)
T KOG2047|consen 680 IYAHGSQ 686 (835)
T ss_pred HHHhhhh
Confidence 8877665
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=9.5e-08 Score=91.56 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=125.0
Q ss_pred CCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCC-C--hhHHhHHhhhhhcCCCHHH
Q 039792 338 NSFDREAMKLFTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQVHAYSFKANIES-D--NFVKNSLVDMYAKCDSLTE 413 (819)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~ 413 (819)
..+.++|.++|-+|.+. .| +..+-.++-+-+-+.|..+.|..+|..+.++---+ + ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 35666777777776652 22 12222344445556666666666666655432111 1 1233456667778888888
Q ss_pred HHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHh
Q 039792 414 ARKVFDVMADRNV---VSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY 490 (819)
Q Consensus 414 A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 490 (819)
|+.+|..+.+.+. .....|+..|.+..+|++|++.-+++.+.+-.+..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 8888888776332 35566778888888888888888877665443322111
Q ss_pred CCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCe---eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039792 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDI---VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAA 567 (819)
Q Consensus 491 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 567 (819)
...|.-|...+.-..+++.|..++.+..+.|. ..--.+.+.+...|+++.|.+.++...+++..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 12233344444445556666666665544222 1222233445666666666666666666543333445555
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhC
Q 039792 568 LITAASNLGSLKHGQQFHNHLIKLG 592 (819)
Q Consensus 568 ll~~~~~~g~~~~a~~~~~~~~~~~ 592 (819)
|..+|...|+.+++..++..+.+..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 6666666666666666666665543
No 60
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=5.8e-05 Score=83.08 Aligned_cols=552 Identities=13% Similarity=0.110 Sum_probs=303.9
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCC--CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCC
Q 039792 179 QMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMV--KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVV 256 (819)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 256 (819)
.+.-...+-|..||.. .++....+ -.++.+.++...+++ +.....+.+...+........+..++-...+. -.
T Consensus 499 KiilY~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~ 573 (1666)
T KOG0985|consen 499 KIILYAKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NS 573 (1666)
T ss_pred HHHHHHHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CC
Confidence 4444556778888854 34555545 578888887777754 34456777777777777777777766665543 34
Q ss_pred CChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC--CCcccHH----H
Q 039792 257 HDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV--KNIISWT----T 330 (819)
Q Consensus 257 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~ 330 (819)
|+....-+-+--....+ |-++-+.++-.+.- +..-+..+...+.+.|-...|++.+..+.. +.++.-+ -
T Consensus 574 Pd~g~LQTrLLE~NL~~----aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE 648 (1666)
T KOG0985|consen 574 PDEGHLQTRLLEMNLVH----APQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE 648 (1666)
T ss_pred hhhhhHHHHHHHHHhcc----chHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH
Confidence 55443332222111112 22333333322221 222367778888899999999988887752 2221111 1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHH-----------cCCCCChhHHh
Q 039792 331 LIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFK-----------ANIESDNFVKN 399 (819)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~ 399 (819)
.+-.|.-.-.++++++.++.|...+++.|..+...+..-|...-..+...++|+.... .++.-|+.+.-
T Consensus 649 wLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~ 728 (1666)
T KOG0985|consen 649 WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHF 728 (1666)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHH
Confidence 1234455566788999999999888888877776666655544444444455444322 12445566666
Q ss_pred HHhhhhhcCCCHHHHHHHHHhcCC-------------------C------------CcchH------HHHHHHHHhc---
Q 039792 400 SLVDMYAKCDSLTEARKVFDVMAD-------------------R------------NVVSY------NAMIEGYSKE--- 439 (819)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~-------------------~------------~~~~~------~~li~~~~~~--- 439 (819)
-.|.+.++.|++.+.+++-++-.- | |.+.| -..|..|.+.
T Consensus 729 KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNp 808 (1666)
T KOG0985|consen 729 KYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNP 808 (1666)
T ss_pred HHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 778888888888887777543221 0 11111 0122233222
Q ss_pred -------------------------------------------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 039792 440 -------------------------------------------EKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFS 476 (819)
Q Consensus 440 -------------------------------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 476 (819)
++..--+..++.....|. .|..|++.+...|..+++
T Consensus 809 s~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 809 SRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNN 887 (1666)
T ss_pred cccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCC
Confidence 222222333333444443 356667766666654432
Q ss_pred hHh-HH---------HHHHHHHHhCCcc----------c---------hhhHHHHHHHHHhcCChHHH-----------H
Q 039792 477 LES-SK---------QIHGLIIKYGVFL----------D---------VFAGSALIDAYSKCFSNKDA-----------R 516 (819)
Q Consensus 477 ~~~-a~---------~i~~~~~~~g~~~----------~---------~~~~~~li~~~~~~g~~~~A-----------~ 516 (819)
-.+ -. .+=....++.... | -..|......+.+..+.+-= +
T Consensus 888 nPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rR 967 (1666)
T KOG0985|consen 888 NPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRR 967 (1666)
T ss_pred ChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHH
Confidence 211 10 0000011110000 0 11111122222222222211 1
Q ss_pred HHHHhcCC------CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCC-----------------CCCCHHHHHH------
Q 039792 517 LVFDEMNQ------RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQ-----------------QRPNEFTFAA------ 567 (819)
Q Consensus 517 ~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------------~~p~~~t~~~------ 567 (819)
.+.+...+ .|+.--..-+.++...+-+.+-++++++..-.. ++.|..-...
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhc
Confidence 22222221 345555556777777777777777777765221 1111111111
Q ss_pred ------HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhC
Q 039792 568 ------LITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHH 641 (819)
Q Consensus 568 ------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 641 (819)
+...+...+-+++|..+|+.. ..+....+.||+ ..+.++.|.++-++...|. .|..+..+-.+.
T Consensus 1048 nyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1048 NYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQG 1117 (1666)
T ss_pred cCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhc
Confidence 123455566778888887653 334445555554 4577888888888876654 589999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc--------
Q 039792 642 GEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW-------- 713 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w-------- 713 (819)
|...+|++-|-+. -|...|.-++.++.+.|.|++-.+++....+..-+|.++ +.++-+|++..-
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 9999998876332 245679999999999999999999988777777777765 356666665411
Q ss_pred ---hhhhHHHHHHHHH--------ccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 714 ---NVELGRYAAEMAI--------SIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 714 ---~~~~a~~~~~~~~--------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
|...-..+..+.+ ++--.+.+.|..|+..+...|++..|..--++.
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1111111111111 112234566777888888888888877665544
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.07 E-value=3.3e-08 Score=98.14 Aligned_cols=193 Identities=15% Similarity=0.098 Sum_probs=104.2
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
.+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...++...+..+. +...+..+...|.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 44555555666666666666666655431 223344444555555555555555555555554332 3334444444555
Q ss_pred hcCCHHHHHHHHhcCCC-----CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 609 KCGSLEDAYETFGSTTW-----KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
..|++++|.+.|++... .....|..+...+...|++++|.+.+++..+ ..|+. ..+..+...+...|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~----- 183 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRG----- 183 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcC-----
Confidence 55555555555444331 1122333344444444444444444444444 23322 23333333444444
Q ss_pred HHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 683 LDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 683 ~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++..|.++..+..++.++...|++++|..+.+.+.+
T Consensus 184 -------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 -------------------------------QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 445555555555566677777888888999999999999998887764
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=3.2e-08 Score=101.23 Aligned_cols=217 Identities=13% Similarity=-0.026 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 541 LENEEAIKLYLELLLSQ-QRPN--EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...++..++..+. +...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45577777777777532 2232 344666667788889999999999999887765 6788999999999999999999
Q ss_pred HHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 039792 618 ETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 618 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 694 (819)
+.|++.. +.+..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|.+.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 9998876 33567888888999999999999999999998 6787653222233345678899999999776542 2
Q ss_pred ccCchHHHHHHHHhhcccchhhhHHHHH----HHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 695 EPGMEHYASVVSLLGRNVWNVELGRYAA----EMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 695 ~p~~~~y~~li~~l~r~~w~~~~a~~~~----~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
.|+...+....-.+|+. +.+.+...+ +...++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 196 ~~~~~~~~~~~~~lg~~--~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGWNIVEFYLGKI--SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHHHHHHHHccCC--CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33333333222233432 222222122 22335667778899999999999999999999999887644
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.7e-07 Score=94.15 Aligned_cols=268 Identities=13% Similarity=0.096 Sum_probs=190.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHh
Q 039792 429 YNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK 508 (819)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 508 (819)
.-.-.+-+...+++.+..++++...+. .++....+..=|..+...|+...-..+-..+++.- +..+.+|-++.-.|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 333444555666777777777776543 23333444444445556666555555555555443 2356677777777778
Q ss_pred cCChHHHHHHHHhcCCCC---eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 039792 509 CFSNKDARLVFDEMNQRD---IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFH 585 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 585 (819)
.|+..+|++.|.+...-| ...|-....+|+-.|..++|+..+...-+--.. ...-+--+---|.+.++++.|.+++
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHH
Confidence 899999999998876533 357888899999999999999988776543111 1111223334577889999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC------C----ChHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 586 NHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW------K----DVACWNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
.+.....+. |+.+.+-+.-+.-..+.+.+|...|+.... + =..+|+.|...|.+.+.+++|+..|++.+
T Consensus 404 ~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 404 KQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 999887654 888888888888888899999999976551 1 12357888899999999999999999998
Q ss_pred HcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHH
Q 039792 656 IEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASV 704 (819)
Q Consensus 656 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~l 704 (819)
. ..| |..|+.++.-.|...|+++.|.+.|++.. .+.|+...-..+
T Consensus 483 ~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~l 528 (611)
T KOG1173|consen 483 L--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISEL 528 (611)
T ss_pred H--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHH
Confidence 8 677 45688888889999999999999999876 466775444333
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.06 E-value=2.3e-07 Score=91.96 Aligned_cols=248 Identities=11% Similarity=0.064 Sum_probs=127.4
Q ss_pred hccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHH
Q 039792 472 SSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIK 548 (819)
Q Consensus 472 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 548 (819)
-..|+.+.+.+.+.++.+..-.++..++-+........|+.+.|..-.++..+ .++........+|.+.|++.+.+.
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH
Confidence 33334444444443333333333333334444444444444444444443322 234444555555666666666666
Q ss_pred HHHHHHHCCCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 549 LYLELLLSQQRPNE-------FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 549 ~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
++.+|.+.|+--|+ .++..+++-+...+..+.-...++...+. .+.++....+++.-+.+||+.++|.++.+
T Consensus 209 ~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 209 ILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 66666655543332 34566666665555555555555544332 23345555666666666666666666665
Q ss_pred cCCCC--ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCc
Q 039792 622 STTWK--DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGM 698 (819)
Q Consensus 622 ~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 698 (819)
...++ |.. -...-.+.+-++.+.-++..++-.+ -.|+ ...+.+|...|.+.+.|.+|.++|+...+ ..|+.
T Consensus 288 ~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~--~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~ 361 (400)
T COG3071 288 DALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK--QHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSA 361 (400)
T ss_pred HHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCCh
Confidence 54422 222 1122233445555555555555544 2332 24566666666666666666666664443 44666
Q ss_pred hHHHHHHHHhhcccchhhhHHHHHHHHHc
Q 039792 699 EHYASVVSLLGRNVWNVELGRYAAEMAIS 727 (819)
Q Consensus 699 ~~y~~li~~l~r~~w~~~~a~~~~~~~~~ 727 (819)
.+|+.+.+.+.+.+ +.+.|.+..+.++-
T Consensus 362 ~~~~~la~~~~~~g-~~~~A~~~r~e~L~ 389 (400)
T COG3071 362 SDYAELADALDQLG-EPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 66666666665554 55666665555553
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=7.3e-05 Score=82.37 Aligned_cols=200 Identities=19% Similarity=0.172 Sum_probs=129.8
Q ss_pred CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039792 526 DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALID 605 (819)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 605 (819)
.+..|..+..+-.+.|...+|++-|-+ .-|+..|.-+++.+.+.|.+++-..++....+..-+|. +-+.||-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHH
Confidence 345789999999999999999887754 24677899999999999999999999999888776654 4467999
Q ss_pred HHHhcCCHHHHHHHHhcCCC-----------------------CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 606 MYAKCGSLEDAYETFGSTTW-----------------------KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
+|++.+++.+-++++..-.. .++.-|.-|...+...|+++.|...-++. -+
T Consensus 1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 99999999988877642110 12233444555555556665555543332 23
Q ss_pred chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 663 YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 663 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
..||..+..+|...+.+.-| +|....+.-..+-..-++..|...+ -.+.-....|.++.++.-+-+.+.-|+-+
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rG-yFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRG-YFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcC-cHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 46888888888877655433 2222222223333444455454332 33444455566666666566666667666
Q ss_pred HHh
Q 039792 743 FAC 745 (819)
Q Consensus 743 y~~ 745 (819)
|++
T Consensus 1323 Ysk 1325 (1666)
T KOG0985|consen 1323 YSK 1325 (1666)
T ss_pred HHh
Confidence 654
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=2.1e-08 Score=95.75 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=172.7
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 039792 531 NAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610 (819)
Q Consensus 531 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 610 (819)
+.|..+|.+.|.+.+|.+.|+.-..+ .|-..||..|-.+|.+....+.|..++.+-.+.-+ .|+....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 45677777888888888777776664 45666777777788888888888888777766532 3555555667777777
Q ss_pred CCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHH
Q 039792 611 GSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 611 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
++.++|.++++... ..++.+.-++..+|...++++-|+..|.++++.|+. +...|..+.-+|...+.+|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 88888888888766 345556667778899999999999999999998864 56778999999999999999999999
Q ss_pred HHHhcCCccCc--hHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 688 SMAGFGIEPGM--EHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 688 ~m~~~g~~p~~--~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+...---.|+. +.|-.+-...-. +-|+..|.+.++.++.-+|++.++|+.|+-+-.+.|+.++|..++......
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~-iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVT-IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEe-ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88873333432 112111111100 018899999999999999999999999999999999999999999988763
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.02 E-value=4.2e-08 Score=97.43 Aligned_cols=194 Identities=13% Similarity=-0.032 Sum_probs=157.9
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
....+..+...|...|++++|...|++..+ | +...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677788889999999999999998764 2 35577778888999999999999999988753 3455677788888
Q ss_pred HhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLD-FDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
+...|++++|...+..+.+.... .....+..+...|.+.|++++|...|++.. +.+...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999999875322 244567778889999999999999998766 33566888899999999999999
Q ss_pred HHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 648 LLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...+++..+. .|+ ...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999884 454 45667777888899999999999887764
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=98.98 E-value=6.5e-08 Score=108.35 Aligned_cols=244 Identities=13% Similarity=-0.046 Sum_probs=146.1
Q ss_pred CChHHHHHHHHhcCCCC---eeehhhhHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 039792 510 FSNKDARLVFDEMNQRD---IVVWNAMLLGYTQQ---------LENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS 577 (819)
Q Consensus 510 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 577 (819)
+..++|...|++..+.| ...|..+..+|... +++++|...+++..+.. +-+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 34567777787776532 23454454444322 33677777777777642 2245556666666677778
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCh-HhHHHHHHHHHhCCChHHHHHHHHHH
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDV-ACWNSMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 654 (819)
+++|...++++++.++. +...+..+...|...|++++|...+++.. .|+. ..+..++..+...|++++|+..+++.
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88888888877777654 55666777777777888888887777765 3332 23333444455677777788877777
Q ss_pred HHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCc-hHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC
Q 039792 655 IIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGM-EHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD 732 (819)
Q Consensus 655 ~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~ 732 (819)
.+.. .|+.. .+..+..++...|+.++|...+.++... .|+. ...+.+...|.+. -+.+...++++++..-..
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN---SERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhhHh
Confidence 6532 35443 3555566677778888888777765431 2222 2223333333332 135555566666554444
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 733 SGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 733 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 44444477777777777777766 555544
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=9e-06 Score=84.63 Aligned_cols=367 Identities=10% Similarity=0.080 Sum_probs=196.1
Q ss_pred hCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHHHH
Q 039792 306 KCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQVHA 384 (819)
Q Consensus 306 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~ 384 (819)
+.++.|+|...++.....+..+...-...+.+.|++++|+++|+.+.+++..- |..--..++.+-.. ... .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-H
Confidence 56778888888775555554455555666777888888888888886654322 11111111111100 000 0
Q ss_pred HHHHcCCCCChhHHhH---HhhhhhcCCCHHHHHHHHHhc--------CCCCc----------chHHHHHHHHHhcCChh
Q 039792 385 YSFKANIESDNFVKNS---LVDMYAKCDSLTEARKVFDVM--------ADRNV----------VSYNAMIEGYSKEEKLS 443 (819)
Q Consensus 385 ~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m--------~~~~~----------~~~~~li~~~~~~g~~~ 443 (819)
.+......| ..+|.. ....+...|++.+|+++++.. .+.|. ..--.|...+...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111112222 222222 233455678888888888776 11111 11233455677889999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHH---HHHhhccCchHhH--HHHHHHHH-----------HhCCccchhhHHHHHHHHH
Q 039792 444 EALDLFHEMRVGFVPPGLLTFVSL---LGLSSSVFSLESS--KQIHGLII-----------KYGVFLDVFAGSALIDAYS 507 (819)
Q Consensus 444 ~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a--~~i~~~~~-----------~~g~~~~~~~~~~li~~~~ 507 (819)
+|..++....... ++|....... |-+.....++-.+ ...++... ...-......-+.++.+|.
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999987663 3444322222 2222222222221 11111100 0000011112234444443
Q ss_pred hcCChHHHHHHHHhcCCCC-eeehhhhHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 039792 508 KCFSNKDARLVFDEMNQRD-IVVWNAMLLGYT--QQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQF 584 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 584 (819)
+..+.+.++-...+... ...+.+++.... +...+.+|.+++...-+....-........+......|+++.|.++
T Consensus 321 --nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 --NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred --hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44556666666655422 223334443322 2234667777777666542222234455556667788999999888
Q ss_pred HH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC------CCC----hHhHHHHHHHHHhCCChHH
Q 039792 585 HN--------HLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT------WKD----VACWNSMICTNAHHGEPMK 646 (819)
Q Consensus 585 ~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~----~~~~~~li~~~~~~g~~~~ 646 (819)
+. .+.+.+. .+.+..+++.+|.+.++-+.|..++++.. .+. ...|.-+..--.++|+-++
T Consensus 399 l~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 88 4444444 34566778888888888777777776543 111 1233334444556788888
Q ss_pred HHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 647 ALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 647 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
|..+++++.+ ..| |..+...++.+|++. +++.|..+-+.+
T Consensus 477 a~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 8888888887 444 456777788877765 566666554443
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.96 E-value=3.1e-07 Score=97.82 Aligned_cols=239 Identities=18% Similarity=0.161 Sum_probs=152.4
Q ss_pred HHhHHhhhhhcCCCHHHHHHHHHhcCC----------CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChh
Q 039792 397 VKNSLVDMYAKCDSLTEARKVFDVMAD----------RNVV-SYNAMIEGYSKEEKLSEALDLFHEMRVG---FVPPGLL 462 (819)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~ 462 (819)
+...|..+|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++..- ..-++.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h- 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH- 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 444466667777777777666655432 1111 1234555677777777777777776421 111111
Q ss_pred HHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCC
Q 039792 463 TFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLE 542 (819)
Q Consensus 463 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 542 (819)
+.-..+++.|...|.+.|++++|...++
T Consensus 280 ------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e---------------------- 307 (508)
T KOG1840|consen 280 ------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCE---------------------- 307 (508)
T ss_pred ------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHH----------------------
Confidence 1123344556667788888888777664
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCC----chhHHHHHHHHHHhcCCHH
Q 039792 543 NEEAIKLYLELLLSQQRPNE-FTFAALITAASNLGSLKHGQQFHNHLIKL---GLDF----DSFITSALIDMYAKCGSLE 614 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~ 614 (819)
.|++++++.... ..|.. .-++.+...|...+.++.|..+++...+. -+.+ -..+++.|...|-+.|+++
T Consensus 308 --~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 308 --RALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred --HHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 455555552111 12222 23555666677777888887777765431 1222 2457888999999999999
Q ss_pred HHHHHHhcCCC-------C-C---hHhHHHHHHHHHhCCChHHHHHHHHHHHH--cCCCCCc----hhHHHHHHHHHccC
Q 039792 615 DAYETFGSTTW-------K-D---VACWNSMICTNAHHGEPMKALLLFREMII--EGLEPNY----ITFVGVLSACSHAG 677 (819)
Q Consensus 615 ~A~~~~~~~~~-------~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~----~t~~~ll~a~~~~g 677 (819)
+|.++|+++.. . + -...+.|...|.+.+++.+|.++|.+... .-+.|+. .+|..|...|...|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 99999987651 1 1 23567788899999999999999888543 1133432 46899999999999
Q ss_pred CHHHHHHHHHHHHh
Q 039792 678 LIEDGLDHFQSMAG 691 (819)
Q Consensus 678 ~~~~a~~~~~~m~~ 691 (819)
++++|.++.+....
T Consensus 465 ~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 465 NYEAAEELEEKVLN 478 (508)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988763
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=6.7e-06 Score=81.65 Aligned_cols=317 Identities=11% Similarity=-0.065 Sum_probs=200.0
Q ss_pred CCCChhHHHHHHHHhhc--cCchHhHHHHHHHHHH-hCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhh
Q 039792 457 VPPGLLTFVSLLGLSSS--VFSLESSKQIHGLIIK-YGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAM 533 (819)
Q Consensus 457 ~~p~~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 533 (819)
++|...+...-+.+++. .++-..+.+.+-.+.. .-+.-++.....+.+.+...|+.++|...|+....-|+.+...|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 33444444444444332 3344444444444443 34555677778888888888999999888888776555444443
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 039792 534 ---LLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610 (819)
Q Consensus 534 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 610 (819)
.-.+.+.|+.+....+...+.... +-+..-|..-....-..++++.|..+-+..++.+.. +...+-.-..++...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 233556778777777766665431 122222333334445667888888888887776544 444444445677778
Q ss_pred CCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHH-HHHH-ccCCHHHHHH
Q 039792 611 GSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVL-SACS-HAGLIEDGLD 684 (819)
Q Consensus 611 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll-~a~~-~~g~~~~a~~ 684 (819)
|+.++|.-.|+... +-+..+|.-|+.+|...|++.+|.-+-..... .-|+. .+...+. ..|. ....-++|..
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 88888888887655 35778888899999888988888888777665 44443 4444442 2232 2334577888
Q ss_pred HHHHHHh--cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 685 HFQSMAG--FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 685 ~~~~m~~--~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
++++-.. .+..|-+...+-+...=| ..+.+....++.+...|+ ...++.|+.++...+.+.+|...+......
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg----~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEG----PTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhC----ccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8777655 222332222222323333 456777888888887774 567888888888888888888888766532
Q ss_pred CCcCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 039792 763 GLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKG 808 (819)
Q Consensus 763 g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 808 (819)
.|+.+...+.|++|+++|++
T Consensus 501 --------------------------dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 501 --------------------------DPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred --------------------------CccchHHHHHHHHHHhccCC
Confidence 45566667778877777763
No 72
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=2.3e-05 Score=83.15 Aligned_cols=556 Identities=15% Similarity=0.116 Sum_probs=271.2
Q ss_pred HcCCChhhHHHHHhccCC-CCcc-hHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCch
Q 039792 98 SKANDLDGARKLFDTMSE-RNLV-SWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGN 175 (819)
Q Consensus 98 ~~~g~~~~A~~~f~~m~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 175 (819)
...|+++.|..+++.... |+.. .|..+...-...|+.--|.+.|..+ |++ .
T Consensus 455 id~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai-----------------------~dv----a 507 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI-----------------------GDV----A 507 (1636)
T ss_pred cccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH-----------------------HHH----H
Confidence 346788888888877653 5554 5777777777777777777777554 111 1
Q ss_pred hHHHHHHHH-------HHhCCC-CCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHH
Q 039792 176 VGEQMHSFV-------IKSGFD-RDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLF 247 (819)
Q Consensus 176 ~~~~~~~~~-------~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 247 (819)
.++.+|+.. ++.|-+ .+-.-..+++.++.| ++.+|+.+|-+- . .-..-|..|....++++|+.+-
T Consensus 508 k~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleq--n---~te~aigmy~~lhkwde~i~la 580 (1636)
T KOG3616|consen 508 KARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQ--N---ATEEAIGMYQELHKWDEAIALA 580 (1636)
T ss_pred HHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhc--c---cHHHHHHHHHHHHhHHHHHHHH
Confidence 233333322 122222 222233444544444 577788777431 1 1133456666777777777765
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcc--cCCCc
Q 039792 248 NQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEI--EVKNI 325 (819)
Q Consensus 248 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~ 325 (819)
+. .|.+.-...-.+-++++...|+-+.|-++- .+..-.-+-|..|.+.|....|.+....- ...|.
T Consensus 581 e~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de 648 (1636)
T KOG3616|consen 581 EA---KGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADE 648 (1636)
T ss_pred Hh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccH
Confidence 43 233222222334455555555554443321 11112234577888888887776654322 23344
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhH-HhHHhhh
Q 039792 326 ISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFV-KNSLVDM 404 (819)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~ 404 (819)
.....+..++.+..-++.|-++|+++.. +.-.+..+.+-..+..|.++-+... +..+.. -..--.-
T Consensus 649 ~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~h 715 (1636)
T KOG3616|consen 649 EILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDH 715 (1636)
T ss_pred HHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHH
Confidence 4444555556666666666666666542 1112222222222333333322211 111110 0111122
Q ss_pred hhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHH
Q 039792 405 YAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIH 484 (819)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 484 (819)
+...|+++.|..-|-+.. ..-.-|.+-.....|.+|+.+++.+...... ..-|..+...|+..|+++.|++++
T Consensus 716 l~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHH
Confidence 233455555554443321 1112234455666777777777776654322 223455556666666666666665
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCC--eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039792 485 GLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRD--IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE 562 (819)
Q Consensus 485 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 562 (819)
-.. ..++-.|++|.+.|++++|.++-.+...|. +..|-+-..-+-.+|++.+|.++|-... .|+.
T Consensus 789 ~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~ 855 (1636)
T KOG3616|consen 789 TEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK 855 (1636)
T ss_pred Hhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH
Confidence 422 234456667777777777766666655442 2233333333455566666666554332 2332
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCC
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHG 642 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 642 (819)
.|..|-+.|..+...++.+.-.- ..-..+...+..-|...|++..|.+-|-+.. -|.+-++.|...+
T Consensus 856 -----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~-----d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 -----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----DFKAAVNMYKASE 922 (1636)
T ss_pred -----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh-----hHHHHHHHhhhhh
Confidence 34455556655555554433211 1112334445555566666666665554322 2444444555555
Q ss_pred ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHH
Q 039792 643 EPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAA 722 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~ 722 (819)
-+++|.++.+. +| ..|..-....+.+-+-.| +.|.+++++. |+--. -||.-+... ..+.|-..+
T Consensus 923 lw~dayriakt---eg-g~n~~k~v~flwaksigg--daavkllnk~---gll~~------~id~a~d~~-afd~afdla 986 (1636)
T KOG3616|consen 923 LWEDAYRIAKT---EG-GANAEKHVAFLWAKSIGG--DAAVKLLNKH---GLLEA------AIDFAADNC-AFDFAFDLA 986 (1636)
T ss_pred hHHHHHHHHhc---cc-cccHHHHHHHHHHHhhCc--HHHHHHHHhh---hhHHH------Hhhhhhccc-chhhHHHHH
Confidence 55555443321 11 122222333333333333 3344444331 11000 001000000 233333333
Q ss_pred HHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 723 EMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 723 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
+.+.+ -.-+..+..++.-+-..|++++|.+-+-+..+.+
T Consensus 987 ri~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 987 RIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 33332 3356788889999999999999988776655443
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=98.95 E-value=9e-08 Score=107.22 Aligned_cols=227 Identities=12% Similarity=-0.023 Sum_probs=151.9
Q ss_pred CchHhHHHHHHHHHHhCCccchhhHHHHHHHHH---------hcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCC
Q 039792 475 FSLESSKQIHGLIIKYGVFLDVFAGSALIDAYS---------KCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLE 542 (819)
Q Consensus 475 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 542 (819)
++.+.|...++..++.... +...+..+..+|. ..++.++|...+++..+ | +...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4567788888877765443 2344444544443 22347788888887765 2 45567777777888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 543 NEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
+++|...|++..+.. +.+...+..+...+...|++++|...++.+++..+. +...+..++..+...|++++|.+.+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888888752 234556777777888888888888888888887655 333333344456667888888888877
Q ss_pred CC---CC-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchh-HHHHHHHHHccCCHHHHHHHHHHHHh-cCCcc
Q 039792 623 TT---WK-DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYIT-FVGVLSACSHAGLIEDGLDHFQSMAG-FGIEP 696 (819)
Q Consensus 623 ~~---~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p 696 (819)
.. .| +...+..+...|...|+.++|.+.++++.. ..|+..+ .+.+...+...| ++|...++.+.+ ..-.|
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 54 23 344567777788888888888888888765 4566544 344444566666 577777777776 55555
Q ss_pred CchHHHHHHHHh
Q 039792 697 GMEHYASVVSLL 708 (819)
Q Consensus 697 ~~~~y~~li~~l 708 (819)
.......++..+
T Consensus 508 ~~~~~~~~~~~~ 519 (553)
T PRK12370 508 NNPGLLPLVLVA 519 (553)
T ss_pred cCchHHHHHHHH
Confidence 544444444443
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=2.5e-06 Score=82.70 Aligned_cols=367 Identities=14% Similarity=0.114 Sum_probs=181.8
Q ss_pred hcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--CCcchHHH-HHHHHHhcCChhHHH
Q 039792 370 CGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--RNVVSYNA-MIEGYSKEEKLSEAL 446 (819)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~g~~~~A~ 446 (819)
.-+.++-+.-..+++.+...- .---+|..+.-..-.+++|.+++.++.. |+-...|. +.-+|.+..-++-+.
T Consensus 131 ahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHH
Confidence 344455555555554443221 1112233333333456778888877764 33344443 334566666677777
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhc--cCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcC-----ChHHHHHHH
Q 039792 447 DLFHEMRVGFVPPGLLTFVSLLGLSSS--VFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCF-----SNKDARLVF 519 (819)
Q Consensus 447 ~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~ 519 (819)
++++--... .||+ |+..=+.+|.. .-+-..+++-...+.+.+-..- ..+.-+++.+ .-+.|.+++
T Consensus 206 evl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVL 277 (557)
T KOG3785|consen 206 EVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVL 277 (557)
T ss_pred HHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhc
Confidence 766665543 2332 22222333322 2222223332333333221110 1122222221 224455544
Q ss_pred HhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hccCChHHHHHHHHHHHHhCCC
Q 039792 520 DEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAA-----SNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 520 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
-.+.+.=+..--.|+--|.+.++..+|..+.+++.- ..|-......+..+- .....+..|.+.|+..-..+..
T Consensus 278 P~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 278 PSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred hHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 433321112222344457788888888887766542 233333332222221 1222355666777666555554
Q ss_pred CchhH-HHHHHHHHHhcCCHHHHHHHHhcCC----CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 039792 595 FDSFI-TSALIDMYAKCGSLEDAYETFGSTT----WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGV 669 (819)
Q Consensus 595 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 669 (819)
-|..- -.++...+.-.-++++....++.+. ..|...+| +..+++..|++.+|.++|-+.....+ -|..+|.++
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~ 433 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSM 433 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHH
Confidence 43322 2345555555566777777777665 33444444 67888888999999988877754222 255666655
Q ss_pred HH-HHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc---hhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 670 LS-ACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW---NVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 670 l~-a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
+. +|.+.|+.+-|+.++-++.. |. +.+ +++.+....-+ ..--|-+++..+-.++|. ++.|
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t----~~-e~f-sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW--------- 497 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT----PS-ERF-SLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW--------- 497 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC----ch-hHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc---------
Confidence 54 77888888888887765532 21 111 12222221100 333445566666666773 4444
Q ss_pred CCCchHHHHHHHHHHhCCCcCCCc
Q 039792 746 NSMWADAKQVRKKMDLDGLMKEAG 769 (819)
Q Consensus 746 ~g~~~~a~~~~~~m~~~g~~~~~g 769 (819)
.|+......++..+....-.+.|+
T Consensus 498 eGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 498 EGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred CCccchHHHHHHHHHcCCCCCCch
Confidence 355555666666665443334443
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.91 E-value=6.8e-06 Score=86.95 Aligned_cols=129 Identities=18% Similarity=0.108 Sum_probs=61.4
Q ss_pred CChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHH
Q 039792 308 GRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSF 387 (819)
Q Consensus 308 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 387 (819)
.++.+|..+|-+-. .-...|..|....++++|+.+-+.. |.+.=...-.+-++++...|+-+.|-++
T Consensus 545 kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~el----- 611 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAEL----- 611 (1636)
T ss_pred hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhh-----
Confidence 35666766664321 1123345555566666666654332 1111111112233344444444433322
Q ss_pred HcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039792 388 KANIESDNFVKNSLVDMYAKCDSLTEARKVFDV--MADRNVVSYNAMIEGYSKEEKLSEALDLFHEMR 453 (819)
Q Consensus 388 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 453 (819)
..+..---+-|..|.+.|..-.|.+.-.. ....|......+..++.+..-+++|-++|+++.
T Consensus 612 ----k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 612 ----KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred ----ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 11112223556778888877776654422 112344445555555666556666666666653
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.6e-05 Score=82.83 Aligned_cols=436 Identities=13% Similarity=0.019 Sum_probs=238.3
Q ss_pred hhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHH--HHHH--HHcCCChhHH
Q 039792 269 CSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTT--LIGG--YMQNSFDREA 344 (819)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~--~~~~g~~~~A 344 (819)
+...+++++|.+....++..+ +.|...+..=+-+..+.+++++|..+.+.-.... +++. +=.+ ..+.+..++|
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHH
Confidence 334455555555555555444 2334444444455666777777776555433211 1222 2333 4478899999
Q ss_pred HHHHHHHHHCCCCCCcc-hHHHHHHHhcCCcchhhHHHHHHHHHHcCCCC-ChhHHhHHhhhhhcCCCHHHHHHHHHhcC
Q 039792 345 MKLFTEMTRSGWKPDDF-ACSSVLTSCGSVEALEQGRQVHAYSFKANIES-DNFVKNSLVDMYAKCDSLTEARKVFDVMA 422 (819)
Q Consensus 345 ~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (819)
+..++ |..++.. +...=...|.+.++++++..+|..+.+++.+. +...-..++..-. .-.+. +.+..+
T Consensus 99 lk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~ 168 (652)
T KOG2376|consen 99 LKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVP 168 (652)
T ss_pred HHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhcc
Confidence 99988 4555443 44444556889999999999999998887643 2222222222111 11121 344444
Q ss_pred CCCcchHHHH---HHHHHhcCChhHHHHHHHHHHhC-------C------CCCChhH-HHHHHHHhhccCchHhHHHHHH
Q 039792 423 DRNVVSYNAM---IEGYSKEEKLSEALDLFHEMRVG-------F------VPPGLLT-FVSLLGLSSSVFSLESSKQIHG 485 (819)
Q Consensus 423 ~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~-------g------~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~ 485 (819)
.....+|..+ ...++..|++.+|++++..-.+- + +.-+..+ -..+.-++-..|+-+++..++.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4334344443 34567899999999999887211 1 1111111 1233445567899999999999
Q ss_pred HHHHhCCccc---hhhHHHHHHHHHhcCChH-HHHHHHHhcCCCCe--------------eeh-hhhHHHHHhcCCHHHH
Q 039792 486 LIIKYGVFLD---VFAGSALIDAYSKCFSNK-DARLVFDEMNQRDI--------------VVW-NAMLLGYTQQLENEEA 546 (819)
Q Consensus 486 ~~~~~g~~~~---~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~--------------~~~-~~li~~~~~~g~~~~A 546 (819)
.+++....-. ....|.|+.+-....-.+ .+...++....... +.. +.++..|.. ..+.+
T Consensus 249 ~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q~ 326 (652)
T KOG2376|consen 249 DIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN--KMDQV 326 (652)
T ss_pred HHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHH
Confidence 8888765422 122233332211111111 22223332221111 111 112222211 12222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh---
Q 039792 547 IKLYLELLLSQQRPNEFTFAALITAASNL--GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFG--- 621 (819)
Q Consensus 547 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--- 621 (819)
.++-.... +..|. ..+.+++..+.+. .....+..++...-+..+.-...+.-.++......|+++.|.+++.
T Consensus 327 r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 327 RELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 22222211 11232 3455555555332 2355666666666655544445666677888888999999999888
Q ss_pred -----cCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCch----hHHHHHHHHHccCCHHHHHHHHHH
Q 039792 622 -----STT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIE--GLEPNYI----TFVGVLSACSHAGLIEDGLDHFQS 688 (819)
Q Consensus 622 -----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 688 (819)
.+. ..-+.+..++..-|.+.++.+.|..++.+.+.. .-.+... ++.-+..--.+.|+-++|..++++
T Consensus 404 ~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 404 ESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 333 222334455666677777777777777776541 1122222 333333344456899999999999
Q ss_pred HHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 689 MAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 689 m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
+.+. ..++.+...++|.+|.+- |.+.|+.+.+++
T Consensus 484 l~k~-n~~d~~~l~~lV~a~~~~--d~eka~~l~k~L 517 (652)
T KOG2376|consen 484 LVKF-NPNDTDLLVQLVTAYARL--DPEKAESLSKKL 517 (652)
T ss_pred HHHh-CCchHHHHHHHHHHHHhc--CHHHHHHHhhcC
Confidence 8872 236778888899999886 788777666554
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.89 E-value=4.5e-07 Score=96.65 Aligned_cols=199 Identities=15% Similarity=0.148 Sum_probs=118.3
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-----CCC-Cch-
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLS-----Q--QRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL-----GLD-FDS- 597 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~- 597 (819)
.+...|...+++.+|..+|+++..- | .+--..++..|-.+|.+.|++++|...++.+.+. +.. |.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3455677777777777777776531 1 1112345566666777888888877777665431 111 111
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCCh----HhHHHHHHHHHhCCChHHHHHHHHHHHHc------CCC
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT-------WKDV----ACWNSMICTNAHHGEPMKALLLFREMIIE------GLE 660 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 660 (819)
..++.++..++..+++++|..++.... .++. -+++.|...|...|++++|.++|++.+.. +..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 223445556666777777766665322 1221 25666677777777777777777666542 111
Q ss_pred CC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHcc-CCCCchhHHH
Q 039792 661 PN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISI-DPMDSGSYTL 738 (819)
Q Consensus 661 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~-~p~~~~~~~~ 738 (819)
+. ...++.+..+|.+.+.+++|.++|..... .. +.+.- .|+-..+|-.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~-----------------------------i~-~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD-----------------------------IM-KLCGPDHPDVTYTYLN 455 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHH-----------------------------HH-HHhCCCCCchHHHHHH
Confidence 21 23456666666666666666666654432 11 11121 3444568889
Q ss_pred HHHHHHhCCCchHHHHHHHHHH
Q 039792 739 LSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 739 l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
|+.+|...|++++|.++-....
T Consensus 456 L~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999999987765
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=5e-06 Score=80.73 Aligned_cols=418 Identities=12% Similarity=0.066 Sum_probs=224.0
Q ss_pred HHHhcCChhHHHHHHhcCCC---CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhH
Q 039792 202 LYAKNGSVDDAKFVFDGLMV---KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGG 278 (819)
Q Consensus 202 ~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 278 (819)
.|.+.|++++|..++..+.. ++...|-.+.-.+.-.|.+.+|..+-....+ ++..-..+....-+.++-+.-
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHH
Confidence 45567888888888776532 3445565565555566777777766554321 222233334444455666655
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC--CCcccHHHH-HHHHHcCCChhHHHHHHHHHHHCC
Q 039792 279 KQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV--KNIISWTTL-IGGYMQNSFDREAMKLFTEMTRSG 355 (819)
Q Consensus 279 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g 355 (819)
.++++.+...- .-.-+|.++..-.-.+.+|+.++.++.. |+....|.- .-+|.+..-++-+.+++.-..+.
T Consensus 141 ~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 141 LTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 56555544321 2223344443344467788888887763 334444443 33566667777777777766653
Q ss_pred CCCCcchHHHHHHHhc--CCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHH
Q 039792 356 WKPDDFACSSVLTSCG--SVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 433 (819)
Q Consensus 356 ~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 433 (819)
.|| .|+..=+.+|. +.=+-..+.+-...+.+.+-..-++.--.+-.-+.-...-+.|.+++-.+.+.-...--.|+
T Consensus 215 -~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 215 -FPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred -CCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 343 23333333432 22222223333333333222111111000001111112234455554443322222233344
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChH
Q 039792 434 EGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNK 513 (819)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 513 (819)
--|.++++..+|..+.+++.- ..|-....-.+.. .++..-......+.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~------------------------------aalGQe~gSreHlK 340 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF------------------------------AALGQETGSREHLK 340 (557)
T ss_pred eeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH------------------------------HHhhhhcCcHHHHH
Confidence 456777788888777766521 1222222221111 11111111122234
Q ss_pred HHHHHHHhcCC-----CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 039792 514 DARLVFDEMNQ-----RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHL 588 (819)
Q Consensus 514 ~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 588 (819)
-|...|+-.-+ .++.--.+|.+.+.-..++++.+..++....--..-|.+. ..+.++.+..|++.+|+++|-.+
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhh
Confidence 45555554332 1233345566666667778888887777766533333333 35677888888999999888777
Q ss_pred HHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhcCCCC-ChHhHHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCCchh
Q 039792 589 IKLGLDFDSFIT-SALIDMYAKCGSLEDAYETFGSTTWK-DVACWNS-MICTNAHHGEPMKALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 589 ~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 665 (819)
....++ +..+| ..|..+|.++++.+-|++++-++..| +..+.-. +..-|-+.+.+--|-+.|+++.. +.|+..-
T Consensus 420 s~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEn 496 (557)
T KOG3785|consen 420 SGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPEN 496 (557)
T ss_pred cChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccc
Confidence 655555 44444 55678899999999999998887754 3344433 44567778888888888888877 7787776
Q ss_pred HHH
Q 039792 666 FVG 668 (819)
Q Consensus 666 ~~~ 668 (819)
|..
T Consensus 497 WeG 499 (557)
T KOG3785|consen 497 WEG 499 (557)
T ss_pred cCC
Confidence 643
No 79
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=4.2e-05 Score=82.40 Aligned_cols=239 Identities=13% Similarity=0.123 Sum_probs=162.2
Q ss_pred CcchhhHHHH--HHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHC-C--------CCCChh
Q 039792 192 DVYVGTSLMN--LYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRET-D--------VVHDKY 260 (819)
Q Consensus 192 ~~~~~~~ll~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~ 260 (819)
|..+-.++++ .|.--|+++.|.+-.+.+. +-..|..|.+.|++..+.+-|.-.+..|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4556666665 5778899999988776553 4457999999999999999988888877632 1 1122 2
Q ss_pred hHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCc-ccHHHHHHHHHcCC
Q 039792 261 LLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNI-ISWTTLIGGYMQNS 339 (819)
Q Consensus 261 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g 339 (819)
+=.-+.-.....|.+++|+.++..-.+. ..|=..|-..|.+++|.++-+.-.+-.. .||..-...+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2222223345678889999988876653 3455667788999999988765332111 24544555555667
Q ss_pred ChhHHHHHHHHH----------HHCC---------CCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhH
Q 039792 340 FDREAMKLFTEM----------TRSG---------WKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNS 400 (819)
Q Consensus 340 ~~~~A~~~~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 400 (819)
+.+.|++.|++- +... -+-|...|...-.-+...|+.+.|..++..+.. |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 777777777652 1110 123444455555556677888888888776553 456
Q ss_pred HhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039792 401 LVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMR 453 (819)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 453 (819)
++...|-.|+.++|-++-++- .|......|...|-..|++.+|..+|.+.+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777888889999998887664 466667778889999999999999998854
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=4.9e-07 Score=82.91 Aligned_cols=160 Identities=14% Similarity=0.069 Sum_probs=129.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHc
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSH 675 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 675 (819)
...|.-.|...|+...|..-+++.. +.+..+|..+...|.+.|+.+.|.+.|++..+ +.|+. ...|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 3446667889999999999998877 33456888899999999999999999999998 88865 578888888888
Q ss_pred cCCHHHHHHHHHHHHh---cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHH
Q 039792 676 AGLIEDGLDHFQSMAG---FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADA 752 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~---~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 752 (819)
.|.+++|...|+.... +|-.+ .+|..+.-.--+++ +.+.++..++++++++|+++.+...++..+...|++-+|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s--~t~eN~G~Cal~~g-q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPS--DTLENLGLCALKAG-QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcc--hhhhhhHHHHhhcC-CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999887 33333 34443333333333 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 039792 753 KQVRKKMDLDGL 764 (819)
Q Consensus 753 ~~~~~~m~~~g~ 764 (819)
...+++....|.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877654
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.79 E-value=3.9e-05 Score=83.12 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=93.3
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039792 531 NAMLLGYTQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK 609 (819)
Q Consensus 531 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 609 (819)
.-+...|-..|++++|++.+++.++. .|+ ...|..-...+.+.|++.+|...++........ |..+-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 44456677889999999999988875 565 455667777888899999999999988887765 77777778888889
Q ss_pred cCCHHHHHHHHhcCCCCCh----------HhH--HHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 610 CGSLEDAYETFGSTTWKDV----------ACW--NSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 610 ~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
+|++++|.+++.....++. ..| .....+|.+.|++..|++.|....+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999988877664441 244 3456778888888888877666543
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.7e-05 Score=78.93 Aligned_cols=266 Identities=11% Similarity=0.034 Sum_probs=130.7
Q ss_pred CCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHH---HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 039792 391 IESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNA---MIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSL 467 (819)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 467 (819)
+..++.....+.+.+...|+.++|...|++...-|..+... ...-+.+.|+.++...+...+.... .-....|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 45566677778888888888888888887765433322221 1223456677776666666654321 1111112112
Q ss_pred HHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHH
Q 039792 468 LGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENE 544 (819)
Q Consensus 468 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 544 (819)
....-...+.+.|..+-+..++.... +...+-.-...+...+++++|.-.|+.... | +..+|.-|+.+|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 22223344555555555544443221 111222222344555666666666655432 2 4556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 545 EAIKLYLELLLSQQRPNEFTFAALI-TAAS-NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 545 ~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
+|.-.-++.... ++.+..+++.+- ..|. ....-++|+.+++...+..+. -....+.+...+...|+.+++..++++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 665554443322 223333333331 2221 122234555555555444332 233344455555555555555555554
Q ss_pred CC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 623 TT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 623 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
.. .+|....+.|...+...+.+++|++.|...+. +.|+
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 43 45555555555555555555555555555554 4453
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.74 E-value=0.0001 Score=81.41 Aligned_cols=327 Identities=14% Similarity=0.078 Sum_probs=148.5
Q ss_pred HHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHH
Q 039792 413 EARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK 489 (819)
Q Consensus 413 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 489 (819)
.|...+.+..+ .+...||.|--. ..-|.+.-|...|-+-... .+-...+|..+--.|....+++.|...+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 45555554332 455666665443 3344555554444443322 222334454444455566666666666665554
Q ss_pred hCCccchhhHHHHHHHHHhcCChHHHHHHHHhc-----CC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHH------
Q 039792 490 YGVFLDVFAGSALIDAYSKCFSNKDARLVFDEM-----NQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLL------ 555 (819)
Q Consensus 490 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------ 555 (819)
..+. +...+--..-.-...|+.-++..+|..- .+ ++..-|-.-.....++|+.++-+..-++...
T Consensus 879 LdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 3322 2222211111222345555555555431 11 2333333333333445554443333222211
Q ss_pred ---CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCchhHHH----HHHHHHHhcCCHHHHHHHHhcCC-CC
Q 039792 556 ---SQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL-GLDFDSFITS----ALIDMYAKCGSLEDAYETFGSTT-WK 626 (819)
Q Consensus 556 ---~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~-~~ 626 (819)
.+.+-+.+.|........+.+.+..+.....+++.. ..+.+...|+ -+...++..|.++.|..-+.... .-
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence 123444556666665555556555555554443310 0111233333 23344555666666655554433 11
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHY 701 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y 701 (819)
|..+-.+-+.. .-.|+++++++.|++... +.-+. +....++.+...++.-+.|...+-+... .+..-...--
T Consensus 1038 dEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~ 1114 (1238)
T KOG1127|consen 1038 DEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLP 1114 (1238)
T ss_pred HHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHH
Confidence 22211111111 334566777777777665 22221 2233444444555555666655555444 3322211111
Q ss_pred HHHHHHhh-cc-------------------cc--------------hhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 702 ASVVSLLG-RN-------------------VW--------------NVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 702 ~~li~~l~-r~-------------------~w--------------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
-+.+..+. .+ -| +-..+.+..++++-..|.|+..|..|.+-|++
T Consensus 1115 L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1115 LPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 11111111 11 01 44566777788888888888888888765543
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=3.6e-06 Score=77.40 Aligned_cols=198 Identities=13% Similarity=0.067 Sum_probs=159.1
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG 611 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 611 (819)
.|.-+|.+.|++..|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|+..++..+. +..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 46678899999999999999988752 335567888888899999999999999999998766 7889999999999999
Q ss_pred CHHHHHHHHhcCC-CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHH
Q 039792 612 SLEDAYETFGSTT-WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 612 ~~~~A~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
++++|...|++.. .|+ ..+|..+..+..+.|+.+.|...|++.++ ..|+. .+...+.......|++-.|..+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 9999999999876 443 45898899899999999999999999998 78875 6888999999999999999999
Q ss_pred HHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchh
Q 039792 686 FQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGS 735 (819)
Q Consensus 686 ~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~ 735 (819)
++.....+. ++.+....-|..-.+.+ |.+.+.+.-.++....|.....
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~g-d~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLG-DRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCcHHH
Confidence 998887433 66665544443333222 5666666667777777765543
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=1.2e-06 Score=83.99 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=134.7
Q ss_pred hHHhhhhhcCCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 039792 399 NSLVDMYAKCDSLTEARKVFDVMAD--RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFS 476 (819)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 476 (819)
+.+..+|.+.|.+.+|++.|+.-.+ +-+.||-.|-..|.+-.+++.|+.++.+-.+. .|..+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~------------ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY------------ 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh------------
Confidence 4555555566666666555554432 34445555555555555555555555554432 2333333
Q ss_pred hHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHH
Q 039792 477 LESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLEL 553 (819)
Q Consensus 477 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 553 (819)
..-+...+...++.++|.++++...+ .++.....+..+|.-.++++-|+..|+++
T Consensus 293 ----------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 293 ----------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ----------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 23334445555666777777776654 35566666677788888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---Ch
Q 039792 554 LLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF--DSFITSALIDMYAKCGSLEDAYETFGSTTWK---DV 628 (819)
Q Consensus 554 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~ 628 (819)
.+.|+. +...|..+--+|...+.++-+..-|.+....--.| -..+|-.|.....-.|++.-|.+.|+-.... +.
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 887754 45566667777777777777777777666533222 2344555555556666666666666655422 23
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
.++|.|...-.+.|++++|..+++.... +.|+
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 4566666666666666666666666655 5555
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.69 E-value=0.00014 Score=76.94 Aligned_cols=374 Identities=13% Similarity=0.056 Sum_probs=209.8
Q ss_pred ccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCC---CcccHHHHHHHHHcCCChhHHHHH
Q 039792 271 MLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVK---NIISWTTLIGGYMQNSFDREAMKL 347 (819)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 347 (819)
..+++..+....+.+++ +.+....+.....-.+...|+-++|....+.-... +.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455555555555555 22222233333333344567888888777765543 446788887777788889999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---C
Q 039792 348 FTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD---R 424 (819)
Q Consensus 348 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~ 424 (819)
|+.... +.||.... +.-|.-.-.+.++++.....-....+ .
T Consensus 98 y~nAl~--~~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 98 YRNALK--IEKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHh--cCCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 988876 44543222 11111111222333333333332222 3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHHH------HhhccCchHhHHHHHHHHHHhCCccchh
Q 039792 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGF-VPPGLLTFVSLLG------LSSSVFSLESSKQIHGLIIKYGVFLDVF 497 (819)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 497 (819)
....|..+..++.-.|+...|..++++..+.. ..|+...+..... .....|.++.+.+.+...... +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 45678888888888999999999999987654 3566655543332 234456666665554433221 111222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC--CCeeehhhh-HHHHHhcCCHHHHH-HHHHHHHHCC---CCCCHHHHHHHHH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ--RDIVVWNAM-LLGYTQQLENEEAI-KLYLELLLSQ---QRPNEFTFAALIT 570 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~g---~~p~~~t~~~ll~ 570 (819)
.-..-.+.+.+.+++++|..++..+.. ||..-|+.. ..++.+-.+.-+++ .+|....+.- -.|-... ++
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp----ls 296 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP----LS 296 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc----HH
Confidence 233455677888999999999998876 444444443 34443344444444 5666554431 1121111 11
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH----HHHhc--------------CCCCChHhHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY----ETFGS--------------TTWKDVACWN 632 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~--------------~~~~~~~~~~ 632 (819)
......-.+....++....+.|+++ ++..+...|-.-...+--. .+... ...|....|+
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 1112222333445666666777653 4444444443322111111 11111 1134555565
Q ss_pred H--HHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 633 S--MICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 633 ~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
. ++..|-..|+++.|..+.+..++ -.|+.+ -|..=...+.|.|++++|...+++..+
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 4 66778888999999999888887 567654 455555778889999998888888765
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=0.00011 Score=79.16 Aligned_cols=396 Identities=14% Similarity=0.074 Sum_probs=229.1
Q ss_pred hCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH
Q 039792 288 RGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVK---NIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACS 364 (819)
Q Consensus 288 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 364 (819)
..+.-|..+|..|.-+...+|+++.+.+.|++...- ....|+.+-..|...|.-..|+.+++.-....-.|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345668999999999999999999999999987633 33569999999999999999999998876543335444433
Q ss_pred HHHHH-hc-CCcchhhHHHHHHHHHHc--CC--CCChhHHhHHhhhhhcC----C-------CHHHHHHHHHhcCCC---
Q 039792 365 SVLTS-CG-SVEALEQGRQVHAYSFKA--NI--ESDNFVKNSLVDMYAKC----D-------SLTEARKVFDVMADR--- 424 (819)
Q Consensus 365 ~ll~~-~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~----g-------~~~~A~~~~~~m~~~--- 424 (819)
.+... |. +.+..+++..+-..++.. +. ...+..|-.+.-+|... . ...++.+.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333 43 456777777776666652 11 11223333333333221 1 123455566665432
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHH-hCCccchhhHHHHH
Q 039792 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK-YGVFLDVFAGSALI 503 (819)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li 503 (819)
|....--+.--|+..++.+.|++..++..+-+-.-+...+..+.-.++..+++..|+.+.+.... .|....... .-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--GKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--hhh
Confidence 22222223344667788999999999988877777778888888888888899999888877654 222110000 001
Q ss_pred HHHHhcCChHHHHHHHHhcC--------------------------C-----CCe-eehhhhHHHHHhcCCHHHHHHHHH
Q 039792 504 DAYSKCFSNKDARLVFDEMN--------------------------Q-----RDI-VVWNAMLLGYTQQLENEEAIKLYL 551 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~--------------------------~-----~~~-~~~~~li~~~~~~g~~~~A~~~~~ 551 (819)
+.-...++.+++......+. - .+. .++..+ .+.... +...+..-.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a~-~~~~~~se~- 631 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVAS-QLKSAGSEL- 631 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHHh-hhhhccccc-
Confidence 11112333333332222111 0 011 111111 111110 000000000
Q ss_pred HHHHCCCCCCH--------HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 039792 552 ELLLSQQRPNE--------FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGST 623 (819)
Q Consensus 552 ~m~~~g~~p~~--------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 623 (819)
.|...-+.|+. ..|......+.+.+..++|...+.+..+..+. ...+|.-....+...|.+++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 01111122211 12333444556666777776666665554322 4556666666777777777777777665
Q ss_pred C--CC-ChHhHHHHHHHHHhCCChHHHHH--HHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 624 T--WK-DVACWNSMICTNAHHGEPMKALL--LFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 624 ~--~~-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
. .| ++.+-+++...+.+.|+..-|.. ++..+.+ +.|+ ...|..+...+-+.|+.++|.+.|.....
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 5 33 45567777777777777666666 7777777 6664 45777777777777777777777776655
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=0.00034 Score=74.08 Aligned_cols=433 Identities=13% Similarity=0.075 Sum_probs=211.6
Q ss_pred HHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHH
Q 039792 234 YVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMA 313 (819)
Q Consensus 234 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 313 (819)
+...|+-++|.+..+.-.+..+ -+.+.|..+--......++++|...+...++.+. .|..++.-|--.-++-|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhH
Confidence 4556777777777666554332 2445566555555666677777777777766542 2455555554444555555544
Q ss_pred HHHHhccc---CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcchHHHHHHH------hcCCcchhhHHHHH
Q 039792 314 RRLFDEIE---VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSG-WKPDDFACSSVLTS------CGSVEALEQGRQVH 383 (819)
Q Consensus 314 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~------~~~~~~~~~a~~~~ 383 (819)
...-.... ...-..|..+..++--.|+...|..++++..+.. -.|+...|.....- ....|.++.+.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44433332 2233567777777777777777777777776543 24555554433222 23344444444444
Q ss_pred HHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--CCcchHHHHH-HHHHhcCChhHHH-HHHHHHHhCCCCC
Q 039792 384 AYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--RNVVSYNAMI-EGYSKEEKLSEAL-DLFHEMRVGFVPP 459 (819)
Q Consensus 384 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p 459 (819)
...... +......-..-.+.+.+.+++++|..++..+.. ||...|+... .++.+--+.-+++ .+|....+. .+-
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r 286 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPR 286 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccc
Confidence 332211 111111122333445556666666666665544 3333333322 2222222222222 333333221 111
Q ss_pred ChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHh
Q 039792 460 GLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQ 539 (819)
Q Consensus 460 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 539 (819)
....-..=++......-.+....++....+.|+++ ++..+...|-.-...+ ++++ ++..|..
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~-----------Lvt~y~~ 348 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEK-----------LVTSYQH 348 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHH-----------HHHHHHh
Confidence 11111111111111222222233333333344332 2222222221111110 1111 1111111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 540 QLENEEAIKLYLELLLSQQRPNEF--TFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 540 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
.-.........+.= .--+|... |+..+...+-+.|+++.|..+++..+..-+. -+..|..-..++...|.+++|.
T Consensus 349 ~L~~~~~f~~~D~~--~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa 425 (700)
T KOG1156|consen 349 SLSGTGMFNFLDDG--KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAA 425 (700)
T ss_pred hcccccCCCccccc--ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHH
Confidence 10000000000000 00144443 3445667778888999999888888775432 3445555567888889999999
Q ss_pred HHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-C-----chhHHHHH--HHHHccCCHHHHHHHH
Q 039792 618 ETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-N-----YITFVGVL--SACSHAGLIEDGLDHF 686 (819)
Q Consensus 618 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~-----~~t~~~ll--~a~~~~g~~~~a~~~~ 686 (819)
.++++.. .+|...=.--..-..+.++.++|.++.......|..- + ...|..+- .+|.+.|++-+|++-|
T Consensus 426 ~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 426 AWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 8888766 3443322233444556788888988888888776421 1 12243333 3688888888888777
Q ss_pred HHHHh
Q 039792 687 QSMAG 691 (819)
Q Consensus 687 ~~m~~ 691 (819)
..+..
T Consensus 506 h~i~k 510 (700)
T KOG1156|consen 506 HEIEK 510 (700)
T ss_pred hhHHH
Confidence 77665
No 89
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=5.8e-08 Score=61.65 Aligned_cols=33 Identities=36% Similarity=0.552 Sum_probs=29.1
Q ss_pred CCCCCcchhhHHHHHHHhcCChhHHHHHHhcCC
Q 039792 188 GFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLM 220 (819)
Q Consensus 188 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 220 (819)
|+.||+.+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 778999999999999999999999999998874
No 90
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=8e-08 Score=61.02 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=26.4
Q ss_pred CCCCChhhhhHHHHHHHcCCChhhHHHHHhccC
Q 039792 82 GLQCDTFLANMLLRNYSKANDLDGARKLFDTMS 114 (819)
Q Consensus 82 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~ 114 (819)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.53 E-value=3.6e-05 Score=78.79 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=14.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 665 TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 665 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+|..+...+.+.|++++|...|++..+
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455555555555555555555555554
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.53 E-value=0.00012 Score=81.01 Aligned_cols=245 Identities=13% Similarity=0.099 Sum_probs=147.5
Q ss_pred HHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 039792 514 DARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIK 590 (819)
Q Consensus 514 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 590 (819)
.|...+....+ .+...||.|--. ...|++.-|...|-+-... .+-+..+|..+--.|....+++.|...+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 45555554433 566777776544 4456666666555544432 234556777777777888888888888888877
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--------CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHc-----
Q 039792 591 LGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--------WKDVACWNSMICTNAHHGEPMKALLLFREMIIE----- 657 (819)
Q Consensus 591 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 657 (819)
..+. +...|-...-.....|+.-++..+|..-. -++..-|-.-..-..++|+.++-+...+.+-..
T Consensus 879 LdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 6543 44444444444455677777777775411 344445554444556666666554444333211
Q ss_pred ---CCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcc----------------cc---
Q 039792 658 ---GLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRN----------------VW--- 713 (819)
Q Consensus 658 ---g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~----------------~w--- 713 (819)
+-.|+ ...|.....-..+.+.+++|.+...+... .-.+-+...|+.....+||- .|
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence 12354 46777777778888888888777777655 44445555666555555554 12
Q ss_pred ---------------hhhhHHHHHHHHHccCCCCchhHHHHHHH---HHhCCCchHHHHHHHHHHh
Q 039792 714 ---------------NVELGRYAAEMAISIDPMDSGSYTLLSNT---FACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ---------------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---y~~~g~~~~a~~~~~~m~~ 761 (819)
+++.+...+++++.+..++...-+.+..+ ...++.-+.|....-+..+
T Consensus 1038 dEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1038 DEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 67778888899988876665544444433 3455666667666555543
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.52 E-value=4.7e-05 Score=82.55 Aligned_cols=127 Identities=14% Similarity=0.064 Sum_probs=102.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChHhHHHHHHHHHh
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWK---DVACWNSMICTNAH 640 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 640 (819)
++..+...+...|+++.|.++.+..++..+. .+..|..-...|-+.|++++|.+.++....- |-..=+-.+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 4455677788999999999999999998654 5788889999999999999999999887743 44555667778889
Q ss_pred CCChHHHHHHHHHHHHcCCCCCch------hH--HHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 641 HGEPMKALLLFREMIIEGLEPNYI------TF--VGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p~~~------t~--~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.|++++|.+++......+..|-.. .| .-...+|.+.|++..|++.|....+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999998877655321 22 3345689999999999988887766
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=0.00041 Score=72.02 Aligned_cols=396 Identities=14% Similarity=0.048 Sum_probs=207.5
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCC-hhHHhHHhhhhhcCCCHH
Q 039792 334 GYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESD-NFVKNSLVDMYAKCDSLT 412 (819)
Q Consensus 334 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 412 (819)
+.+..|+++.|+..|.+..... ++|.+-|+.=..+++..|+++.|.+=-...++ +.|+ ..-|+-+..++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 4567788999999998877642 23777787778888888888877665555444 3444 345666777777778888
Q ss_pred HHHHHHHhcCCC---CcchHHHHHHHHHhcCChhHH-HHHHHHH-HhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHH
Q 039792 413 EARKVFDVMADR---NVVSYNAMIEGYSKEEKLSEA-LDLFHEM-RVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLI 487 (819)
Q Consensus 413 ~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 487 (819)
+|..-|.+-.+. |...++-+..++ ..+.+ .+.|..- .-.++..+..|-..+- ...+ ..++..+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~-----~~~~---~~~l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLS-----DPAY---VKILEII 155 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhc-----cHHH---HHHHHHh
Confidence 888888776542 344555555554 11111 1111100 0001111111111110 0000 0111111
Q ss_pred HHh----CCccchhhHHHHHHHHHhcCChHHH-HHHHHh-----cCCC---------C-------------eeehhhhHH
Q 039792 488 IKY----GVFLDVFAGSALIDAYSKCFSNKDA-RLVFDE-----MNQR---------D-------------IVVWNAMLL 535 (819)
Q Consensus 488 ~~~----g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~-----~~~~---------~-------------~~~~~~li~ 535 (819)
.+. +...+ ...++.+.......+.- ...-.. +..| . ..-...+.+
T Consensus 156 ~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 156 QKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred hcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 100 00000 00111111110000000 000000 0001 0 011233555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH-------HHHHH
Q 039792 536 GYTQQLENEEAIKLYLELLLSQQRPNEFT-FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSA-------LIDMY 607 (819)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~ 607 (819)
..-+..+++.|++-+....+.. ...| ++..-.++...|.+..+...-...++.|.. ...-++. +..+|
T Consensus 233 aaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhh
Confidence 5666677888888888777643 3444 445555667777777777666666655543 2222222 33467
Q ss_pred HhcCCHHHHHHHHhcCCCC--ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHH
Q 039792 608 AKCGSLEDAYETFGSTTWK--DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLD 684 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 684 (819)
.+.++.+.|...|.+...+ +.. ...+....++++...+...- +.|... -...=.+.+.+.|++..|+.
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 7778888888888775411 111 11122334445554444443 445432 23333566777777777777
Q ss_pred HHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 685 HFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 685 ~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.+.+++... +-|...|+.-.-.|.+.+ ++..|..-++..++++|+....|..=+-++....+|++|.+.+++.++.
T Consensus 380 ~YteAIkr~-P~Da~lYsNRAac~~kL~-~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 380 HYTEAIKRD-PEDARLYSNRAACYLKLG-EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHhcC-CchhHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777633 223445655555554433 6667777777778888887777777777777778888888777765543
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=0.0046 Score=67.39 Aligned_cols=182 Identities=10% Similarity=0.065 Sum_probs=85.4
Q ss_pred hcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHH
Q 039792 205 KNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAH 284 (819)
Q Consensus 205 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 284 (819)
..|-+++|+.++.+-.. |..|=..|-..|.+++|+++-+.=-+-.+ ..||..-..-+...++.+.|.+.|+.
T Consensus 812 eLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 45667777777664332 34444555666777777776654222111 23444444445555666666665553
Q ss_pred HHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH
Q 039792 285 VLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACS 364 (819)
Q Consensus 285 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 364 (819)
. |.. --.+...|. .+........+.+.++ ..|.-.-..+-..|+.+.|+.+|...++ |-
T Consensus 884 ~---~~h-afev~rmL~------e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 884 A---GVH-AFEVFRMLK------EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred c---CCh-HHHHHHHHH------hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 2 110 000111110 1112222222222222 2222233334455666666666666543 34
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhc
Q 039792 365 SVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVM 421 (819)
Q Consensus 365 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (819)
++.+..|-.|+.++|-++-++- -|....-.|.++|-..|++.+|..+|.+.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4445555556666655554331 13333344555666666666666655443
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.41 E-value=4.4e-06 Score=84.13 Aligned_cols=151 Identities=13% Similarity=0.068 Sum_probs=89.1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH----ccCC
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACS----HAGL 678 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~ 678 (819)
...+|...|++++|.+++.+. .+....-..+..|.+.++++.|.+.++.|.+ +..|. +...+..++. -.+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchh
Confidence 344556667777776666654 3444555566667777777777777777765 44443 2222333222 1235
Q ss_pred HHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCc-hHHHHHH
Q 039792 679 IEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMW-ADAKQVR 756 (819)
Q Consensus 679 ~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~ 756 (819)
+.+|..+|+++.+ +| ++....+.+.-+.-..+ +.+.|+...+++++.+|.++.+...++-+....|+. +.+.+.+
T Consensus 183 ~~~A~y~f~El~~~~~--~t~~~lng~A~~~l~~~-~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFG--STPKLLNGLAVCHLQLG-HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 6777777777665 33 33333333322222111 667777777888888999999999998888888988 6677788
Q ss_pred HHHHh
Q 039792 757 KKMDL 761 (819)
Q Consensus 757 ~~m~~ 761 (819)
.+++.
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 87764
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00025 Score=67.63 Aligned_cols=293 Identities=11% Similarity=0.056 Sum_probs=165.1
Q ss_pred CCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--CCcchHHH
Q 039792 354 SGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--RNVVSYNA 431 (819)
Q Consensus 354 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ 431 (819)
.|+.....-+.+++..+.+..++..+.+++..-.+.... +....+.|..+|-...++..|...++++.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 344445555666776677777777777776665554321 444556666777777777777777777654 32222221
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcC
Q 039792 432 -MIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCF 510 (819)
Q Consensus 432 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 510 (819)
-..++-+.+.+.+|+.+...|.+. |+...-..-+.+.. .-..+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI---------------------------------kYse~ 126 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAI---------------------------------KYSEG 126 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH---------------------------------hcccc
Confidence 134555667777777777776542 11111111111110 11234
Q ss_pred ChHHHHHHHHhcC-CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 039792 511 SNKDARLVFDEMN-QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLS-QQRPNEFTFAALITAASNLGSLKHGQQFHNHL 588 (819)
Q Consensus 511 ~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 588 (819)
++..+..+.+..+ +.+..+.+.......+.|++++|++-|+...+- |..| ...|+..+.. .+.++++.|.....++
T Consensus 127 Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 127 DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEI 204 (459)
T ss_pred cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHH
Confidence 4444555555554 233344444444445556666666666655542 3333 3444444433 2345556666655555
Q ss_pred HHhCCCCc----------------------------hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChHhHHHHH
Q 039792 589 IKLGLDFD----------------------------SFITSALIDMYAKCGSLEDAYETFGSTTW-----KDVACWNSMI 635 (819)
Q Consensus 589 ~~~~~~~~----------------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li 635 (819)
++.|++.. +..+|.-...+-+.|+++.|.+.+-.|++ .|++|...+.
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 55443211 11222233446688999999999999984 3777776554
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHH
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQS 688 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 688 (819)
-. -..+++.+..+-++-+.+ +.| ...||..++-.|++..-++-|..++.+
T Consensus 285 l~-n~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 285 LM-NMDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred Hh-cccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 22 234556666666666666 567 357999999999999988888777644
No 98
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.39 E-value=0.0032 Score=65.53 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 039792 543 NEEAIKLYLELLLS-QQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF-DSFITSALIDMYAKCGSLEDAYETF 620 (819)
Q Consensus 543 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 620 (819)
.+...+.++++... ...|+ .+|...++...+..-++.|+.+|.++.+.+..+ ++.++++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 45556666666543 23343 567788888888899999999999999987777 88899999998885 6789999999
Q ss_pred hcCC--CCChHh-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHHHHHHHHHHHh-cC-
Q 039792 621 GSTT--WKDVAC-WNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIEDGLDHFQSMAG-FG- 693 (819)
Q Consensus 621 ~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g- 693 (819)
+-.. -+|... -...+.-+..-++-..|..+|++.+..++.||. ..|...|.-=+.-|++..+.++-+++.. +.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 8766 334443 356677777889999999999999998788875 6899999999999999999999988877 65
Q ss_pred -CccCchHHHHHHHHhhc
Q 039792 694 -IEPGMEHYASVVSLLGR 710 (819)
Q Consensus 694 -~~p~~~~y~~li~~l~r 710 (819)
..|...+-..+++.||-
T Consensus 505 ~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGI 522 (656)
T ss_pred hhcCCCChHHHHHHHHhh
Confidence 66666677777787774
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.38 E-value=0.00031 Score=74.78 Aligned_cols=254 Identities=11% Similarity=-0.031 Sum_probs=127.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHH---HHHHhhccCchHhHHHHHHHHHHhCCccc-hhhHHHHHHHHHhcC
Q 039792 435 GYSKEEKLSEALDLFHEMRVGFVPPGLLTFVS---LLGLSSSVFSLESSKQIHGLIIKYGVFLD-VFAGSALIDAYSKCF 510 (819)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~~~~~g 510 (819)
.+...|++++|.+.+++..+.. +.|...+.. ........+....+.+.+.. .....|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4455677777777777765542 222222221 11111112333333333322 1111122 223334445667777
Q ss_pred ChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCChHHHHHH
Q 039792 511 SNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQ-RPNE--FTFAALITAASNLGSLKHGQQF 584 (819)
Q Consensus 511 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~~ 584 (819)
++++|...+++..+ .+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777776654 2344556666677777777777777777665321 1222 2344566666777777777777
Q ss_pred HHHHHHhCCC-CchhHH-H--HHHHHHHhcCCHHHHHHH---Hhc---CCCCChHhH--HHHHHHHHhCCChHHHHHHHH
Q 039792 585 HNHLIKLGLD-FDSFIT-S--ALIDMYAKCGSLEDAYET---FGS---TTWKDVACW--NSMICTNAHHGEPMKALLLFR 652 (819)
Q Consensus 585 ~~~~~~~~~~-~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~ 652 (819)
++.+....+. +..... + .++..+...|....+.+. ... ........+ .....++...|+.++|..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7776543321 111111 1 223333334422222221 111 101111122 245566777788888888888
Q ss_pred HHHHcCCC-------CCch-hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 653 EMIIEGLE-------PNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 653 ~m~~~g~~-------p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+...... +..+ ......-++...|+.++|.+.+.....
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87653222 1111 122222356678888888888877765
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.37 E-value=0.011 Score=71.88 Aligned_cols=360 Identities=8% Similarity=-0.086 Sum_probs=207.3
Q ss_pred hhhhhcCCCHHHHHHHHHhcCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHh
Q 039792 402 VDMYAKCDSLTEARKVFDVMADRNVVS--YNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLES 479 (819)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 479 (819)
...+...|++.+|..........+... ...........|+++.+...+..+.......+..........+...++.++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 334555677776666655554332111 111122344567777777776665221111122222233344456678888
Q ss_pred HHHHHHHHHHhCCc------cc--hhhHHHHHHHHHhcCChHHHHHHHHhcCC--C--Ce----eehhhhHHHHHhcCCH
Q 039792 480 SKQIHGLIIKYGVF------LD--VFAGSALIDAYSKCFSNKDARLVFDEMNQ--R--DI----VVWNAMLLGYTQQLEN 543 (819)
Q Consensus 480 a~~i~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~li~~~~~~g~~ 543 (819)
+...+....+.--. +. ......+...+...|++++|...+++... + +. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 88877766543111 11 11222233455678899999888877543 2 11 2334455567778999
Q ss_pred HHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHH----hCCC--C-chhHHHHHHHHHHhcC
Q 039792 544 EEAIKLYLELLLSQQ---RP--NEFTFAALITAASNLGSLKHGQQFHNHLIK----LGLD--F-DSFITSALIDMYAKCG 611 (819)
Q Consensus 544 ~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g 611 (819)
++|...+.+.....- .+ ...++..+...+...|+++.|...++.... .+.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999998888764211 11 123445556677888999999998887654 2221 1 2233455666777789
Q ss_pred CHHHHHHHHhcCC------CC--ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCchhH-----HHHHHHHHccC
Q 039792 612 SLEDAYETFGSTT------WK--DVACWNSMICTNAHHGEPMKALLLFREMIIEGLE-PNYITF-----VGVLSACSHAG 677 (819)
Q Consensus 612 ~~~~A~~~~~~~~------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g 677 (819)
++++|...+++.. .+ ....+..+...+...|+.++|.+.+++.....-. .....+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 9999988887653 11 1234455666778899999999998888652111 111111 11223445578
Q ss_pred CHHHHHHHHHHHHhcCCccCchH----HHHHHHHhhcccchhhhHHHHHHHHHccCC------CCchhHHHHHHHHHhCC
Q 039792 678 LIEDGLDHFQSMAGFGIEPGMEH----YASVVSLLGRNVWNVELGRYAAEMAISIDP------MDSGSYTLLSNTFACNS 747 (819)
Q Consensus 678 ~~~~a~~~~~~m~~~g~~p~~~~----y~~li~~l~r~~w~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~y~~~g 747 (819)
..+.|.+.+........ ..... +..+...+...+ +.+.|...++++++... .....+..++.+|...|
T Consensus 668 ~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 668 DKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQILLG-QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 99999888777554111 11111 111222222222 66777777787776522 22346778899999999
Q ss_pred CchHHHHHHHHHHhCC
Q 039792 748 MWADAKQVRKKMDLDG 763 (819)
Q Consensus 748 ~~~~a~~~~~~m~~~g 763 (819)
+.++|...+.+..+..
T Consensus 746 ~~~~A~~~L~~Al~la 761 (903)
T PRK04841 746 RKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887644
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.37 E-value=2.3e-05 Score=78.92 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=89.4
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCChH
Q 039792 504 DAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAAS----NLGSLK 579 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~ 579 (819)
.++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ....+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 4555667777777766654 33444455667777888888888888887753 333 33334444332 223577
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCCh-HHHHHHHHHHH
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEP-MKALLLFREMI 655 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 655 (819)
.|..+|+++.+. +.+++.+.+.+..+....|++++|.+++.+.. +.|..+.-.+|......|+. +.+.+++.++.
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 777777776543 44566667777777777777777777666544 23444555556666666665 45556666666
Q ss_pred HcCCCCCc
Q 039792 656 IEGLEPNY 663 (819)
Q Consensus 656 ~~g~~p~~ 663 (819)
. ..|+.
T Consensus 264 ~--~~p~h 269 (290)
T PF04733_consen 264 Q--SNPNH 269 (290)
T ss_dssp H--HTTTS
T ss_pred H--hCCCC
Confidence 5 45553
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.37 E-value=1.8e-05 Score=75.18 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=105.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 604 IDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
+-.|.+.|+++.+....+....+. ..+...++.++++..+++.++ ..|+. ..|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 445777777766544433322111 012235667788888888777 56755 5688888888899999999
Q ss_pred HHHHHHHHh-cCCccCchHHHHHHHHh-hccc-chhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 683 LDHFQSMAG-FGIEPGMEHYASVVSLL-GRNV-WNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 683 ~~~~~~m~~-~g~~p~~~~y~~li~~l-~r~~-w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
...|++..+ .+- +...+..+..++ .+.+ +..+.|..+++++++++|+++.++..|+..+...|++++|...++++
T Consensus 93 ~~a~~~Al~l~P~--~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLRGE--NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988877 322 333444444432 2221 13588999999999999999999999999999999999999999999
Q ss_pred HhCC
Q 039792 760 DLDG 763 (819)
Q Consensus 760 ~~~g 763 (819)
.+..
T Consensus 171 L~l~ 174 (198)
T PRK10370 171 LDLN 174 (198)
T ss_pred HhhC
Confidence 7643
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.35 E-value=0.0005 Score=73.16 Aligned_cols=307 Identities=10% Similarity=-0.071 Sum_probs=149.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHH-HHHHhhccCchHhHHHHHHHHHHhCCccchhhHHH---
Q 039792 427 VSYNAMIEGYSKEEKLSEALDLFHEMRVGF-VPPGLLTFVS-LLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSA--- 501 (819)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~-ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~--- 501 (819)
..|..+...+...|+.+.+...+.+..+.. ..++...... ....+...|+.+.+..+++...+.... +...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 456666677777788887766666654322 1223222211 122345567777777777777665432 2222221
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCee---ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 039792 502 LIDAYSKCFSNKDARLVFDEMNQRDIV---VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSL 578 (819)
Q Consensus 502 li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 578 (819)
........+..+.+.+.+......+.. ....+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 111112234444455554442221221 22223345566666666666666666542 22334455555566666666
Q ss_pred HHHHHHHHHHHHhCCC-Cch--hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh--HhHH------HHHHHHHhCCChHHH
Q 039792 579 KHGQQFHNHLIKLGLD-FDS--FITSALIDMYAKCGSLEDAYETFGSTTWKDV--ACWN------SMICTNAHHGEPMKA 647 (819)
Q Consensus 579 ~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~------~li~~~~~~g~~~~A 647 (819)
++|..+++...+.... ++. ..+..+...+...|++++|.+++++...++. ..+. .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 6666666666554321 121 2233455666666666666666665431111 1111 122222333332222
Q ss_pred HHHHHHHHHc--CCCCCc-hhH--HHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHH
Q 039792 648 LLLFREMIIE--GLEPNY-ITF--VGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAA 722 (819)
Q Consensus 648 ~~~~~~m~~~--g~~p~~-~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~ 722 (819)
.+. +.+... ...|.. ..+ .....++...|+.++|...++.+......++.
T Consensus 245 ~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~------------------------ 299 (355)
T cd05804 245 DRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD------------------------ 299 (355)
T ss_pred HHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc------------------------
Confidence 222 111110 000111 112 23344555566666666666555431111000
Q ss_pred HHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 723 EMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 723 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
....+.........+.++...|++++|.+.+....+.+
T Consensus 300 ---~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 300 ---NKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred ---hhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00011134566788899999999999999998877644
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00017 Score=68.77 Aligned_cols=323 Identities=13% Similarity=0.058 Sum_probs=148.0
Q ss_pred CCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC--CCcccHHH-
Q 039792 254 DVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV--KNIISWTT- 330 (819)
Q Consensus 254 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~- 330 (819)
|+.....-|.+++..+.+..++..+.+++..-.+... .+....+.|...|....++..|-..++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 3333334455555555555666666655554444321 1333444555555555566666655555542 22222221
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCC
Q 039792 331 LIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDS 410 (819)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 410 (819)
-...+.+.+.+.+|+.+...|.+. |+...-..-+.+. ..-..++
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~D 127 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGD 127 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------Hhccccc
Confidence 123344555555555555555431 1111111111111 1123345
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhHHHHHHHHhhccCchHhHHHHHHHHH
Q 039792 411 LTEARKVFDVMAD-RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVG-FVPPGLLTFVSLLGLSSSVFSLESSKQIHGLII 488 (819)
Q Consensus 411 ~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 488 (819)
+..++.+.++.+. .+..+.+.......+.|+++.|.+-|+...+- |..| ...|+..+.. .+.++...|.....+++
T Consensus 128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEII 205 (459)
T ss_pred CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHH
Confidence 5555555555552 33333333333344556666666666555442 3332 3344433322 23455555555555555
Q ss_pred HhCCccchhhH----HHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHH
Q 039792 489 KYGVFLDVFAG----SALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLL-SQQRPNEF 563 (819)
Q Consensus 489 ~~g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~ 563 (819)
++|++..+..- .-.++.-.-.+-...+..-+ +..+|.-...+.+.|+++.|.+.+-.|.- ..-..|++
T Consensus 206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HhhhhcCCccCccceeccCchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 55543211110 00000000000000000000 11233333445666777777777766652 22345666
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
|...+.-. -..+++..+.+-+..+...++ ....++..++-.|||..-++-|..++.+-.
T Consensus 279 TLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 279 TLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred hhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 66544322 123345555555555555554 345677777778888888888888876654
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.33 E-value=3.5e-05 Score=76.49 Aligned_cols=49 Identities=8% Similarity=-0.013 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHccCCCC---chhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 714 NVELGRYAAEMAISIDPMD---SGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+.+.|...++++++..|++ +..+..++.+|...|++++|...++.+..+
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7888888999999987765 478999999999999999999999888654
No 106
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=0.00021 Score=73.06 Aligned_cols=204 Identities=11% Similarity=0.021 Sum_probs=135.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 039792 536 GYTQQLENEEAIKLYLELLLSQQRPNEFT-FAALITAASNLG-SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSL 613 (819)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 613 (819)
.+...++.++|+.+..+.++ +.|+..| |..--.++...| .++++...++.+++.+++ +..+|+....++.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 34556778888888888876 3555443 444444445556 578888888888887766 555677666566666653
Q ss_pred --HHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHcc---CC----HH
Q 039792 614 --EDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHA---GL----IE 680 (819)
Q Consensus 614 --~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~---g~----~~ 680 (819)
+++.++++++. .+|..+|+.....+...|+++++++.++++++ ..|+ ...|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHH
Confidence 56777776665 56777888888888888899999999999988 4554 45666666655554 22 24
Q ss_pred HHHHHHHHHHh-cCCccCchHHHHHHHHhhc---ccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 681 DGLDHFQSMAG-FGIEPGMEHYASVVSLLGR---NVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 681 ~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r---~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
+..++..+++. ..-..+ .|..+-.+|.. ..++...+...+.+++..+|+++.++..|+.+|...
T Consensus 201 ~el~y~~~aI~~~P~N~S--aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 201 SELKYTIDAILANPRNES--PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHHhCCCCcC--HHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 66777766665 322223 33333333332 112334466777888888898888999999999864
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.28 E-value=0.0012 Score=80.18 Aligned_cols=192 Identities=11% Similarity=-0.008 Sum_probs=116.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC-------CC----eeehhhhHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHH
Q 039792 500 SALIDAYSKCFSNKDARLVFDEMNQ-------RD----IVVWNAMLLGYTQQLENEEAIKLYLELLLS--QQRPN--EFT 564 (819)
Q Consensus 500 ~~li~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t 564 (819)
..+...+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3444555666666666666554332 11 011223344556668888888777776532 11122 233
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHH-----HHHHHHHHhcCCHHHHHHHHhcCCCCCh-------HhH
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDF-DSFIT-----SALIDMYAKCGSLEDAYETFGSTTWKDV-------ACW 631 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~ 631 (819)
+..+.......|+.+.|...+.......... ....+ ...+..+...|+.+.|.+.+.....+.. ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4445556677888888888887775431111 11111 1123445568899999998876553221 113
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIE----GLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..+..++...|++++|..++++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667788899999999999988753 333332 3566667788999999999999999987
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.0029 Score=65.99 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=70.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc--
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN-- 711 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~-- 711 (819)
...+.+.|++..|+..|.++++ ..|+. ..|.....+|.+.|.+.+|+.-.+...+. .|+ .+.+|-|.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~------~~kgy~RKg~ 434 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPN------FIKAYLRKGA 434 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Cch------HHHHHHHHHH
Confidence 4566777888888888888887 44754 56777777888888888887776666552 333 12222221
Q ss_pred ----cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 712 ----VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 712 ----~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
.-+.+.+..+++++++.+|++...-..+...+...
T Consensus 435 al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 01677888888888888888888877777777653
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.23 E-value=0.00013 Score=83.41 Aligned_cols=221 Identities=16% Similarity=0.114 Sum_probs=172.4
Q ss_pred CCChhHHHHHHHHhhccCchHhHHHHHHHHHHh-CCc---cchhhHHHHHHHHHhcCChHHHHHHHHhcCCC-C-eeehh
Q 039792 458 PPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY-GVF---LDVFAGSALIDAYSKCFSNKDARLVFDEMNQR-D-IVVWN 531 (819)
Q Consensus 458 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~ 531 (819)
+-+...|..-|......++.+.|+.+.+++.+. ++. --..+|.++++.-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 334456667777777888888888888877653 222 23456777777777778888889999988763 3 35678
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhc
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD-FDSFITSALIDMYAKC 610 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 610 (819)
.|...|.+.+.+++|-++|+.|.++ +.-....|...+..+.+...-+.|..++.++++.-++ -......-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8899999999999999999999976 4456678889999999999999999999998876443 2455666678888899
Q ss_pred CCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCH
Q 039792 611 GSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLI 679 (819)
Q Consensus 611 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 679 (819)
|+.+.++.+|+... ++-...|+..|..-.+||+.+.+..+|++.+..++.|-. ..|.-.|..=...|+-
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 99999999999877 556789999999999999999999999999998888854 4566666544444543
No 110
>PLN02789 farnesyltranstransferase
Probab=98.23 E-value=0.0002 Score=73.18 Aligned_cols=186 Identities=13% Similarity=0.067 Sum_probs=137.7
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCCh--HH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG-SLEDAYETFGSTT---WKDVACWNSMICTNAHHGEP--MK 646 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~ 646 (819)
...+..++|..+...+++..+. +..+|+....++.+.| +++++++.++++. +++..+|+.....+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 3456788999999999988765 5667777777777777 6899999998876 55667888776666666663 77
Q ss_pred HHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCc-cCchHHHH-HHHHh---hcccchhhhHHH
Q 039792 647 ALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIE-PGMEHYAS-VVSLL---GRNVWNVELGRY 720 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p~~~~y~~-li~~l---~r~~w~~~~a~~ 720 (819)
++.+++++++ +.|. ..+|.....++.+.|+++++++.++++++.... +..-++.. ++.-+ ++-.-..+....
T Consensus 127 el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 8999999998 7785 578999999999999999999999999984322 23222222 22222 111001345677
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhC----CCchHHHHHHHHHHh
Q 039792 721 AAEMAISIDPMDSGSYTLLSNTFACN----SMWADAKQVRKKMDL 761 (819)
Q Consensus 721 ~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~m~~ 761 (819)
...++++++|+|..+|..+..+|... ++..+|.+...+...
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 78899999999999999999999883 455678777776544
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=2e-05 Score=82.20 Aligned_cols=193 Identities=18% Similarity=0.217 Sum_probs=137.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCCCC---eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-----C---CHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQRD---IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-----P---NEF 563 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p---~~~ 563 (819)
+...|..|....+..++-..|+..+.+..+-| ....-+|.-.|...|.-.+|++.++.-+....+ + +..
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 45556666666666677777777777776533 344555566788888888888888876543210 0 000
Q ss_pred HHHHHHHHHhccCChHHHHHHH-HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHH
Q 039792 564 TFAALITAASNLGSLKHGQQFH-NHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNA 639 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 639 (819)
+-.. ........+....++| +.....+..+|+.+...|.-.|--.|.+++|...|+... +.|...||-|...++
T Consensus 398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 0000 1111112233334444 444455656899999999999999999999999999876 457889999999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 640 HHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...+.++|+..|++.++ +.|+.+ ....|.-+|...|.+++|.+.|-..+.
T Consensus 476 N~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred CCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999 999975 566677789999999999999877665
No 112
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.16 E-value=0.0039 Score=61.08 Aligned_cols=302 Identities=16% Similarity=0.137 Sum_probs=176.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH---HHHhhccCchHhHHHHHHHHHHhCCccchhhHH-HHHHHHH
Q 039792 432 MIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSL---LGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGS-ALIDAYS 507 (819)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~~~ 507 (819)
+-..+...|++.+|+.-|....+. |...|.++ ...|...|.-..|..=+...++. +||-..-. .-...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 556677788888888888877543 22233332 23445555555555555544443 23321111 1123456
Q ss_pred hcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 039792 508 KCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNH 587 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 587 (819)
+.|.++.|..-|+.+.+.++.- +....++.+ +.+.+++. .....+..+...|+...+......
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEHW---------VLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHHH---------HHHHHHHHHhcCCchhhHHHHHHH
Confidence 7777777777777665422210 000111111 11111111 122334445567788888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 588 LIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 588 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
+++..+ .|...+..-..+|...|.+..|+.=++... ..+....--+-..+..-|+.+.++...++.++ +.||..
T Consensus 181 llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 877653 477777777888888888888876555433 44555555566667777888888888888887 778753
Q ss_pred -hH---HHH-------HH--HHHccCCHHHHHHHHHHHHhcCCccCc--hHHH---HHHHHhhcccchhhhHHHHHHHHH
Q 039792 665 -TF---VGV-------LS--ACSHAGLIEDGLDHFQSMAGFGIEPGM--EHYA---SVVSLLGRNVWNVELGRYAAEMAI 726 (819)
Q Consensus 665 -t~---~~l-------l~--a~~~~g~~~~a~~~~~~m~~~g~~p~~--~~y~---~li~~l~r~~w~~~~a~~~~~~~~ 726 (819)
.| ..| -+ .....+.|-++.+..++..+. .|.. ..|+ .+-..+.... +...|.+...+.+
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~-~~~eAiqqC~evL 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDE-QFGEAIQQCKEVL 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccC-CHHHHHHHHHHHH
Confidence 22 111 11 233445666666666655542 2331 1121 1111121112 6677888888899
Q ss_pred ccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 727 SIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 727 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+++|+|..++.--+.+|....+|++|..=+++..+.
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999999888999998888877663
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.00014 Score=78.09 Aligned_cols=227 Identities=11% Similarity=0.006 Sum_probs=155.2
Q ss_pred HHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--CCeeehhhhHHHHHhcC
Q 039792 464 FVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--RDIVVWNAMLLGYTQQL 541 (819)
Q Consensus 464 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g 541 (819)
-..+...+...|-...|..+++.+. .+.-+|..|+..|+..+|..+...-.+ ||...|..+.+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 3344455555666666666666443 345567777777877777777665443 56667777777766666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 542 ENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 542 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
-+++|+++++..-.. .-..+-....+.++++++.+.++.-.+.++- ...+|-.+.-++.++++++.|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 677777777654321 1111111123357788888888777766543 56778888888889999999999998
Q ss_pred cCC--CC-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC
Q 039792 622 STT--WK-DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG 697 (819)
Q Consensus 622 ~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~ 697 (819)
... .| +..+||.+-.+|.+.|+-.+|...+++..+.+.. +-..|....-.....|.+++|++.+.++.. .....|
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 766 44 4568999999999999999999999999986633 334466666667889999999999999987 333335
Q ss_pred chHHHHHHHHh
Q 039792 698 MEHYASVVSLL 708 (819)
Q Consensus 698 ~~~y~~li~~l 708 (819)
..+..-++...
T Consensus 623 ~~vl~~iv~~~ 633 (777)
T KOG1128|consen 623 DEVLLIIVRTV 633 (777)
T ss_pred chhhHHHHHHH
Confidence 55555544433
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.07 E-value=0.00011 Score=65.91 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=44.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcc
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRN 711 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~ 711 (819)
+...+...|++++|...|++... +.|+. ..|..+..+|...|++++|...|+..... .| +...+..+...+-+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHc
Confidence 33344444444444444444444 33432 33444444444444444444444444431 11 111111111111111
Q ss_pred cchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 712 VWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 712 ~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
+ +.+.|...+++++++.|+++..|...+++.
T Consensus 106 g-~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 106 G-EPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred C-CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 1 344444455555666666666666555543
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.07 E-value=0.00032 Score=66.66 Aligned_cols=112 Identities=10% Similarity=0.093 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH-HHhCCC--hHHHHHH
Q 039792 577 SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT-NAHHGE--PMKALLL 650 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~-~~~~g~--~~~A~~~ 650 (819)
+.+++...++..++.++. +...|..|...|...|++++|...|++.. +.+...+..+..+ +...|+ .++|.++
T Consensus 54 ~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 334444444444444333 44444555555555555555555554433 2234444444443 234344 3555555
Q ss_pred HHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 651 FREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 651 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+++..+ ..|+. ..+..+..++...|++++|+..|+++.+
T Consensus 133 l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555 44433 3344444455555555555555555544
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=5.3e-06 Score=53.68 Aligned_cols=35 Identities=37% Similarity=0.649 Sum_probs=32.4
Q ss_pred eeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCCh
Q 039792 225 VSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDK 259 (819)
Q Consensus 225 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 259 (819)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.06 E-value=0.00027 Score=70.07 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCC--CCe----eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH-HHHHH
Q 039792 496 VFAGSALIDAYSKCFSNKDARLVFDEMNQ--RDI----VVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-PNE-FTFAA 567 (819)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~~ 567 (819)
...+-.+...+.+.|++++|...|+++.+ |+. ..+..+..+|...|++++|...|+++.+.... |.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 44455566666777777777777776654 221 24455666677777777777777777654211 111 12333
Q ss_pred HHHHHhcc--------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHH
Q 039792 568 LITAASNL--------GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNA 639 (819)
Q Consensus 568 ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 639 (819)
+..++... |+.+.|.+.++.+.+..+. +......+..... ...... .....+...|.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~~----------~~~~~~a~~~~ 177 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRLA----------GKELYVARFYL 177 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHHH----------HHHHHHHHHHH
Confidence 33333332 5566667776666665443 2222222211100 000000 01124566788
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC----chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 640 HHGEPMKALLLFREMIIEGLEPN----YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..|++++|+..+++.++ ..|+ ...+..+..++.+.|++++|..+++.+..
T Consensus 178 ~~g~~~~A~~~~~~al~--~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 178 KRGAYVAAINRFETVVE--NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HcCChHHHHHHHHHHHH--HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999987 4444 25788899999999999999999988875
No 118
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.06 E-value=0.011 Score=58.02 Aligned_cols=312 Identities=12% Similarity=0.048 Sum_probs=147.1
Q ss_pred HHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHH---HHHcCCChhHHHHHHHHHHHCCCCCCcchHHH-HHHHhcCCc
Q 039792 299 VLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIG---GYMQNSFDREAMKLFTEMTRSGWKPDDFACSS-VLTSCGSVE 374 (819)
Q Consensus 299 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~ 374 (819)
-|-..+...|++.+|+.-|....+-|...|-++.+ .|...|+...|+.=+.+.++ ++||-..-.. --..+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 34445556677778887777777777766666543 56777777777777777665 4565321110 001133445
Q ss_pred chhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039792 375 ALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRV 454 (819)
Q Consensus 375 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 454 (819)
.++.|..-|+.+++...... ....++.+.-..++-. .....+..+...|+...|++....+.+
T Consensus 121 ele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 55555555544444322110 0000111100001000 011223344455666666666666554
Q ss_pred CCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcC---CCCeeehh
Q 039792 455 GFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMN---QRDIVVWN 531 (819)
Q Consensus 455 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 531 (819)
- .+. |...|..-..+|...|++..|+.-+.... ..+...+-
T Consensus 184 i-~~W-----------------------------------da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y 227 (504)
T KOG0624|consen 184 I-QPW-----------------------------------DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY 227 (504)
T ss_pred c-Ccc-----------------------------------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH
Confidence 2 222 34444444455555555555544333322 23334444
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG 611 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 611 (819)
-+-..+-..|+.+.++...++-.+ +.||....-.. ...+......+..|. .....+
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~------YKklkKv~K~les~e----------------~~ie~~ 283 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF------YKKLKKVVKSLESAE----------------QAIEEK 283 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH------HHHHHHHHHHHHHHH----------------HHHhhh
Confidence 444455556666666666665554 34544221110 001111111111111 111223
Q ss_pred CHHHHHHHHhcCC--CCC--hH---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHH
Q 039792 612 SLEDAYETFGSTT--WKD--VA---CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGL 683 (819)
Q Consensus 612 ~~~~A~~~~~~~~--~~~--~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 683 (819)
+|.++.+-.+... .|. .+ .+..+-.+|...|++.+|++...+.++ +.||. .++.--..||.-..++|+|+
T Consensus 284 ~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAI 361 (504)
T ss_pred hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHH
Confidence 3333333333222 111 11 233344555666777777777777766 66663 45666666676667777777
Q ss_pred HHHHHHHh
Q 039792 684 DHFQSMAG 691 (819)
Q Consensus 684 ~~~~~m~~ 691 (819)
.-|+...+
T Consensus 362 ~dye~A~e 369 (504)
T KOG0624|consen 362 HDYEKALE 369 (504)
T ss_pred HHHHHHHh
Confidence 77776665
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.00027 Score=75.96 Aligned_cols=217 Identities=13% Similarity=0.144 Sum_probs=167.1
Q ss_pred CccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 492 VFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 492 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
+.|--..-..+.+.+.++|-...|..+|++.. .|...|.+|...|+..+|..+..+-.+ -+||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34445555678889999999999999999864 688889999999999999999888877 47999999999988
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKAL 648 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 648 (819)
.....-+++|.++.+..... .-.++.....+.++++++.+.|+.-. .--..+|-.+..+..+.++.+.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88887888888888765432 11222233344789999999998655 335668999999999999999999
Q ss_pred HHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCc--hHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 649 LLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGM--EHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 649 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~--~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
+.|..... +.||. ..|+.+-.+|.+.|+-.+|...+.+..+....|-. +.|..+.--.| +.+.+.+++.+.
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvg----e~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVG----EFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcc----cHHHHHHHHHHH
Confidence 99999998 89987 57999999999999999999999999985544432 23333322222 455666666666
Q ss_pred Hcc
Q 039792 726 ISI 728 (819)
Q Consensus 726 ~~~ 728 (819)
+++
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 554
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.0019 Score=73.78 Aligned_cols=238 Identities=13% Similarity=0.096 Sum_probs=151.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHH
Q 039792 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALID 504 (819)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 504 (819)
+...|..|+..|...+++++|.++.++-.+. .|+...+ |-.+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~----------------------------------yy~~G~ 73 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISA----------------------------------LYISGI 73 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceeh----------------------------------HHHHHH
Confidence 4456677777777777777777777754432 3332221 222222
Q ss_pred HHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 039792 505 AYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQF 584 (819)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 584 (819)
.+...++.+++..+ .++..+....++.-...+.+.|.+ ..-+...+..+..+|.+.|+.+++..+
T Consensus 74 l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~ 138 (906)
T PRK14720 74 LSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGV 138 (906)
T ss_pred HHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHH
Confidence 44444444444332 233334444445334444445554 233445788888999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 585 HNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
++++++..+. |+.+.|-+...|+.. ++++|.+++.+. +..|...+++.++.++|.++.. ..|+.+
T Consensus 139 yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 139 WERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDF 203 (906)
T ss_pred HHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccc
Confidence 9999998855 899999999999999 999999987663 3447777899999999999998 778765
Q ss_pred h-HHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 665 T-FVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 665 t-~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
. |..++......-....+..++. .+.+-|... -+.+.+...++.+++.+|.|..+..-++..|
T Consensus 204 d~f~~i~~ki~~~~~~~~~~~~~~---------------~l~~~y~~~-~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 204 DFFLRIERKVLGHREFTRLVGLLE---------------DLYEPYKAL-EDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred hHHHHHHHHHHhhhccchhHHHHH---------------HHHHHHhhh-hhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 4 3444443332211222222221 122222211 1666788888999999999888888888887
Q ss_pred H
Q 039792 744 A 744 (819)
Q Consensus 744 ~ 744 (819)
.
T Consensus 268 ~ 268 (906)
T PRK14720 268 K 268 (906)
T ss_pred H
Confidence 7
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=7.8e-06 Score=52.86 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.00087 Score=63.52 Aligned_cols=123 Identities=17% Similarity=0.057 Sum_probs=77.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCC
Q 039792 566 AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHG 642 (819)
Q Consensus 566 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 642 (819)
..+-..+...|+-+....+......... .|......++....+.|++..|...|.+.. ++|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 4444555555666555555555433322 255555666666777777777777776655 456667777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 643 EPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+.++|..-|.+..+ +.|+. ...+.+...+.-.|+.+.|..++.+...
T Consensus 149 r~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 149 RFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777766 66654 4566666666667777777777666655
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.95 E-value=0.038 Score=57.91 Aligned_cols=119 Identities=7% Similarity=-0.028 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcccchhhhHHHH
Q 039792 644 PMKALLLFREMIIEG-LEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRNVWNVELGRYA 721 (819)
Q Consensus 644 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~~w~~~~a~~~ 721 (819)
.+.....++++...- ++| ..+|..+++.-.+..-++.|+.+|.+..+.+..+ .+..+++++.-++.. |.+.|-++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk--D~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK--DKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC--ChhHHHHH
Confidence 555566677766521 222 3467788887777777888899999888866666 777888888888865 88888888
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCc
Q 039792 722 AEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 722 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 765 (819)
++-.+...++++..-.....-+...++-..|..+|++....++.
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 88888888888877777777888888888888888888766443
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.92 E-value=0.0015 Score=73.98 Aligned_cols=127 Identities=9% Similarity=0.050 Sum_probs=66.8
Q ss_pred eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039792 527 IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE-FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALID 605 (819)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 605 (819)
+..+-.|.....+.|++++|..+++...+ +.|+. .....+...+.+.+.+++|....+...+..+. +......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 34444455555555555555555555554 24433 23344455555555555555555555555443 4444555555
Q ss_pred HHHhcCCHHHHHHHHhcCCC--C-ChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 606 MYAKCGSLEDAYETFGSTTW--K-DVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
++.+.|+.++|.++|++... | +...|..+..++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555442 1 134555555555555555555555555554
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0028 Score=59.60 Aligned_cols=192 Identities=18% Similarity=0.167 Sum_probs=141.4
Q ss_pred CCHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 039792 541 LENEEAIKLYLELLL---SQ-QRPNEFT-FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED 615 (819)
Q Consensus 541 g~~~~A~~~~~~m~~---~g-~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 615 (819)
.+.++.++++.++.. .| ..|+..+ |-.+.-+....|+.+.|...++.+.+.- +-+..+...-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 467888888887763 34 5666654 5567777788899999999999988764 3345554444555667899999
Q ss_pred HHHHHhcCCC---CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 039792 616 AYETFGSTTW---KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGF 692 (819)
Q Consensus 616 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 692 (819)
|.+++++... .|.+++--=+......|+.-+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence 9999999883 35667777777777888888999988888872 455778999999999999999999999999986
Q ss_pred CCccCchH-HHHHHHHh---hcccchhhhHHHHHHHHHccCCCCchhHH
Q 039792 693 GIEPGMEH-YASVVSLL---GRNVWNVELGRYAAEMAISIDPMDSGSYT 737 (819)
Q Consensus 693 g~~p~~~~-y~~li~~l---~r~~w~~~~a~~~~~~~~~~~p~~~~~~~ 737 (819)
+.|-... +..+.+.+ |-. -|++.+...+++++++.|.+...+.
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~-eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGA-ENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhChHhHHHHH
Confidence 3343322 22333332 221 2999999999999999996655443
No 126
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.4e-05 Score=51.17 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=30.2
Q ss_pred eeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCC
Q 039792 224 AVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVH 257 (819)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 257 (819)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999998887
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.88 E-value=0.00022 Score=63.99 Aligned_cols=87 Identities=11% Similarity=-0.061 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCC
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGL 678 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 678 (819)
+...+...|++++|...|+... +.+...|..+...+...|++++|+..|++..+ +.|+. .++..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCC
Confidence 3444444445555544444433 22334444455555555555555555555554 34432 344444445555555
Q ss_pred HHHHHHHHHHHHh
Q 039792 679 IEDGLDHFQSMAG 691 (819)
Q Consensus 679 ~~~a~~~~~~m~~ 691 (819)
.++|...|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 128
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=2.4e-05 Score=50.09 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777777666
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0019 Score=61.21 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=109.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-
Q 039792 549 LYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKD- 627 (819)
Q Consensus 549 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 627 (819)
+.+.+.......+......-...|.+.|++++|....... - +....-.=+..+.|..+++-|...+++|..-|
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 4444554444445444445555677888888888776541 1 22333333455667778888888888888543
Q ss_pred hHhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHH
Q 039792 628 VACWNSMICTNAH----HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYA 702 (819)
Q Consensus 628 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~ 702 (819)
-.+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....+|...|++++|..+++.... ..-.| ++..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp--etL~ 245 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP--ETLA 245 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH--HHHH
Confidence 3455556555543 34688888888888753 678888888888888888888888888888876 22222 2222
Q ss_pred HH---HHHhhcccchhhhHHHHHHHHHccCCCCc
Q 039792 703 SV---VSLLGRNVWNVELGRYAAEMAISIDPMDS 733 (819)
Q Consensus 703 ~l---i~~l~r~~w~~~~a~~~~~~~~~~~p~~~ 733 (819)
.+ .-..|+ +.+.-.+...++....|+.+
T Consensus 246 Nliv~a~~~Gk---d~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGK---DAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCC---ChHHHHHHHHHHHhcCCcch
Confidence 22 223343 55666667777777777654
No 130
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.85 E-value=0.0023 Score=73.76 Aligned_cols=232 Identities=13% Similarity=0.102 Sum_probs=165.0
Q ss_pred CCCc-chHHHHHHHhcCCcchhhHHHHHHHHHHc-CCCC---ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC-CC-cchH
Q 039792 357 KPDD-FACSSVLTSCGSVEALEQGRQVHAYSFKA-NIES---DNFVKNSLVDMYAKCDSLTEARKVFDVMAD-RN-VVSY 429 (819)
Q Consensus 357 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~-~~~~ 429 (819)
.||. ..|..-|......++.+.|+++.+++++. ++.- -..+|.+++++-...|.-+...++|++..+ -| ...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 3543 34455555566777777777777776653 1211 133566777766666777788888888775 22 3467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCc-cchhhHHHHHHHHHh
Q 039792 430 NAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVF-LDVFAGSALIDAYSK 508 (819)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~ 508 (819)
..|...|.+.+.+++|.++|+.|.+. .......|...+..+.+.++-+.|..++....+.-.. -......-.+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 78888888888889999999988765 2355667788888888888888888888887765333 245556667777889
Q ss_pred cCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHH
Q 039792 509 CFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE--FTFAALITAASNLGSLKHGQQ 583 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~ 583 (819)
+|+.+.++.+|+.... +-...|+..|+.=.++|+.+.+..+|++....++.|-. +.|...|..-...|+-+.++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 9999999999998775 24678999999999999999999999999988887754 445556655556666555555
Q ss_pred HHHHHH
Q 039792 584 FHNHLI 589 (819)
Q Consensus 584 ~~~~~~ 589 (819)
+-.++.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 444443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.83 E-value=0.0029 Score=65.38 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=93.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 039792 537 YTQQLENEEAIKLYLELLLSQQRPNEFTF-AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED 615 (819)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 615 (819)
+...|.+++|+..++.+... .||...| ......+...++.++|.+.++.+....+. .....-.+.++|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 44556677777777776654 3444333 34445566777777777777777765443 25555566777777777777
Q ss_pred HHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-
Q 039792 616 AYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG- 691 (819)
Q Consensus 616 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~- 691 (819)
|..++++.. +.|+..|..|..+|...|+..+|..-..++ +...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHh
Confidence 777776655 446667777777777777777666655443 4446777777777777666
Q ss_pred -cCCccCchHHHHHHHHhh
Q 039792 692 -FGIEPGMEHYASVVSLLG 709 (819)
Q Consensus 692 -~g~~p~~~~y~~li~~l~ 709 (819)
....|+-.-|...|+.+.
T Consensus 455 ~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 455 VKLGFPDWARADARIDQLR 473 (484)
T ss_pred ccCCcHHHHHHHHHHHHHH
Confidence 234455444444444443
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0025 Score=60.51 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=75.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCC
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGL 678 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 678 (819)
+-..|.-.|+-+.+..+..... ..|....+..+......|++.+|+..|.+... ..|+ ..+|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 3344444455555444444432 33434444455555556666666666666555 3443 3455555555666666
Q ss_pred HHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 039792 679 IEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVR 756 (819)
Q Consensus 679 ~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 756 (819)
.++|..-|.+..+ .+-.|.+..=-.|. .+-+. |.+.|+.....+....+.|..+-..|+-+....|+.++|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms-~~L~g--d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMS-LLLRG--DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHH-HHHcC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666655555 44444332211111 11122 5555555555555555555555556666666666666655543
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.82 E-value=0.0024 Score=73.01 Aligned_cols=189 Identities=12% Similarity=0.073 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN 574 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 574 (819)
.+-.+..+|.+.|+.++|..+++++.+ .|+...|.+...|... +.++|.+++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555666666666666666666554 2344555555555555 666666665554432 334
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 654 (819)
.+++..+.+++..+....+. +...+-.+.+.....-.. ..-+.++--+-..|...+++++++.+++..
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~-----------~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREF-----------TRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred hhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhcc-----------chhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 44555666666666555433 333322222222111001 122344555666777778888888888888
Q ss_pred HHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC
Q 039792 655 IIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD 732 (819)
Q Consensus 655 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~ 732 (819)
++ +.|+ .....-++.+|. +.+.. ...|++..+ .|+.-.-. ++..+..-+++.+..+|++
T Consensus 250 L~--~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~--------------~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 250 LE--HDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRK--------------PVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred Hh--cCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCc--------------cHHHHHHHHHHHeeecCCC
Confidence 87 6664 346666666655 33333 444444444 44443311 4455555566666666655
Q ss_pred c
Q 039792 733 S 733 (819)
Q Consensus 733 ~ 733 (819)
-
T Consensus 311 y 311 (906)
T PRK14720 311 F 311 (906)
T ss_pred E
Confidence 3
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.00038 Score=72.61 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=71.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhccc
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRNV 712 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~~ 712 (819)
|+..+...++++.|+++|+++.+. .|+ ....+...+...++-.+|.+++++.... .| +......-.+.|-+..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 333444445555555555555542 233 2223444444455555555555555531 11 1111222222221111
Q ss_pred chhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 713 WNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 713 w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+.+.|...++++.++.|++..+|..|+.+|...|+|++|......+-
T Consensus 249 -~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 -KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66788888999999999999999999999999999999998887663
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.78 E-value=0.00038 Score=62.03 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=74.7
Q ss_pred HHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHcc
Q 039792 650 LFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISI 728 (819)
Q Consensus 650 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~ 728 (819)
.+++.+. ..|+. .....+...+...|++++|.+.|+.....+ ..+...+..+...+.+.+ +.+.|...+++++++
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLK-EYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 4555554 55644 335555566667777777777777766522 112333444444443322 567777778888889
Q ss_pred CCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 729 DPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 729 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999877653
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.77 E-value=0.002 Score=72.96 Aligned_cols=138 Identities=7% Similarity=-0.002 Sum_probs=89.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHH
Q 039792 594 DFDSFITSALIDMYAKCGSLEDAYETFGSTT--WK-DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGV 669 (819)
Q Consensus 594 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 669 (819)
..+...+-.|.+.....|+.++|..+++... .| +...+..++..+.+.+++++|+..+++..+ ..|+.. ....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3356677777777888888888888887766 34 344667777778888888888888888877 677664 45555
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhH
Q 039792 670 LSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSY 736 (819)
Q Consensus 670 l~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~ 736 (819)
..++.+.|++++|..+|++....+ |+ ...+.....++-+.+ +.+.|..+++++++...+-...|
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G-~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRG-ALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhCcchHHH
Confidence 557777888888888888777621 22 222222323332222 56777777777777765444443
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.75 E-value=0.00072 Score=60.20 Aligned_cols=98 Identities=15% Similarity=0.038 Sum_probs=52.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH 641 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 641 (819)
...+...+...|++++|...++.+...++. +...+..+...|.+.|++++|...++... +.+...|..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 334444455556666666666655554432 45555555555555566665555555443 23344455555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCchh
Q 039792 642 GEPMKALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~t 665 (819)
|+.++|+..|++..+ +.|+...
T Consensus 99 g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 99 GEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred CCHHHHHHHHHHHHH--hccccch
Confidence 666666666655555 4454443
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.74 E-value=0.0052 Score=63.60 Aligned_cols=143 Identities=14% Similarity=0.051 Sum_probs=116.4
Q ss_pred HHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHH
Q 039792 506 YSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLGSLKHG 581 (819)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 581 (819)
+...|+.++|+..++.+.. | |+..+......+...++..+|.+.++++... .|+ ......+-.++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 4456888888888888764 5 4555566678899999999999999999874 666 45566778889999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 582 QQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
..+++......+. |+..|..|..+|...|+..+|... ...+|...|++++|+..+....+. +++
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A--------------~AE~~~~~G~~~~A~~~l~~A~~~-~~~ 457 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLA--------------RAEGYALAGRLEQAIIFLMRASQQ-VKL 457 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHH--------------HHHHHHhCCCHHHHHHHHHHHHHh-ccC
Confidence 9999999887765 899999999999999999988764 455788999999999999998875 455
Q ss_pred CchhH
Q 039792 662 NYITF 666 (819)
Q Consensus 662 ~~~t~ 666 (819)
+..+|
T Consensus 458 ~~~~~ 462 (484)
T COG4783 458 GFPDW 462 (484)
T ss_pred CcHHH
Confidence 55443
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.69 E-value=0.15 Score=57.01 Aligned_cols=214 Identities=12% Similarity=0.120 Sum_probs=121.8
Q ss_pred hcCChhHHHHHHhcCCCCC-eeeHHHHHHHH--HhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHH
Q 039792 205 KNGSVDDAKFVFDGLMVKT-AVSWTTIITGY--VKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQI 281 (819)
Q Consensus 205 ~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 281 (819)
..+++..|....+++..+. ...|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...+..+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 3456666766666653322 22355555554 5788888888888887665544 777888888888888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhCCChH----HHHHHHhcccCCCcccHHHHHHHHHcC-CCh---------hHHHHH
Q 039792 282 HAHVLRRGMGMDVSVINVLMDFYSKCGRVK----MARRLFDEIEVKNIISWTTLIGGYMQN-SFD---------REAMKL 347 (819)
Q Consensus 282 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~A~~~ 347 (819)
++...+.. |+......+..+|.+.+.+. .|.++++..+++--.-|+. ++.+.+. ... .-|.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHH
Confidence 88887653 45777777778888877654 4666777655444444443 3333322 111 223344
Q ss_pred HHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHHHHH-HHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcC
Q 039792 348 FTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQVHAY-SFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMA 422 (819)
Q Consensus 348 ~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (819)
++.+.+.+-+. +..-...-+..+...+..++|.+++.. ..+.-..-+...-+--++.+.+.+++.+..++-.++.
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444432111 111111112223455667777766632 2222223334444555666666677666655555444
No 140
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.69 E-value=2.6e-05 Score=49.40 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=31.0
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhCCCchHHHH
Q 039792 722 AEMAISIDPMDSGSYTLLSNTFACNSMWADAKQ 754 (819)
Q Consensus 722 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 754 (819)
++++++++|+|+.+|..|+++|...|++++|.+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=5e-05 Score=47.35 Aligned_cols=31 Identities=35% Similarity=0.806 Sum_probs=25.9
Q ss_pred eeHHHHHHHHHhcCCchhHHHHHHHHHHCCC
Q 039792 225 VSWTTIITGYVKSGRSDLSLNLFNQMRETDV 255 (819)
Q Consensus 225 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 255 (819)
++||.||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.64 E-value=0.0013 Score=68.79 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=66.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKH 580 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 580 (819)
.|+..+...++++.|..+|+++.+.++.....|+..+...++-.+|.+++++.... .+-+...+..-...|.+.++++.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHH
Confidence 34444445566666666666666555555555556666666666666666665543 12233333333444555556666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 581 GQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 581 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
|..+.+++.+..+. +..+|..|..+|.+.|+++.|...++.++
T Consensus 253 AL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666665555433 44455555666666666666655555554
No 143
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.0019 Score=67.84 Aligned_cols=221 Identities=11% Similarity=0.002 Sum_probs=162.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 039792 536 GYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED 615 (819)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 615 (819)
-+.+.|+..+|.-.|+..+.+. +-+...|.-|-......++-..|+..+.+..+..+. +....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3678899999999999888763 335677888888888888888999999999888765 77788888888999999999
Q ss_pred HHHHHhcCCCCC-hHhHHHHH--H-------HHHhCCChHHHHHHHHHHH-HcCCCCCchhHHHHHHHHHccCCHHHHHH
Q 039792 616 AYETFGSTTWKD-VACWNSMI--C-------TNAHHGEPMKALLLFREMI-IEGLEPNYITFVGVLSACSHAGLIEDGLD 684 (819)
Q Consensus 616 A~~~~~~~~~~~-~~~~~~li--~-------~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 684 (819)
|.+.++.-.... ...|..-- . .+..........++|-++. +.+..+|......|.-.|.-.|.+++|+.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999888754111 11111110 0 1111122344555555554 44444677778888888888999999999
Q ss_pred HHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 685 HFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 685 ~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.|+..+. ++|+ ...|+-+--.|.... ..+.|..++.+++++.|.-..+.+.|+-.|...|.|+||.+.+=....
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~-~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGN-RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCc-ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9998876 5565 446676666666442 667889999999999999999999999999999999999998776654
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=7.1e-05 Score=46.66 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGL 659 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 659 (819)
+||+|+.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00077 Score=65.67 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=83.8
Q ss_pred CCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcc--cchhhhHHHHHHHHHccCCCCchh
Q 039792 660 EPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRN--VWNVELGRYAAEMAISIDPMDSGS 735 (819)
Q Consensus 660 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~--~w~~~~a~~~~~~~~~~~p~~~~~ 735 (819)
.|+ ...|..|..+|...|+.+.|...|....+ .|-+|+. +..+...+-.+ .-....+..++++++.+||.|..+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 564 46788888888888888888888888887 6666653 22222222211 116778999999999999999999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCc
Q 039792 736 YTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAG 769 (819)
Q Consensus 736 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g 769 (819)
...|+-.+++.|++.+|...++.|.+....-+|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999999865544343
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.51 E-value=0.0026 Score=56.15 Aligned_cols=98 Identities=6% Similarity=-0.058 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSAC 673 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 673 (819)
...-.+...+...|++++|..+|+-.. ..+..-|-.|..++...|++++|+..|..... +.||. ..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence 334445666778899999999998766 44677889999999999999999999999998 77865 6889999999
Q ss_pred HccCCHHHHHHHHHHHHh-cCCccC
Q 039792 674 SHAGLIEDGLDHFQSMAG-FGIEPG 697 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~-~g~~p~ 697 (819)
...|+.+.|.+.|+..+. .+-.|.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999988 655554
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.50 E-value=0.002 Score=56.87 Aligned_cols=99 Identities=11% Similarity=-0.023 Sum_probs=74.4
Q ss_pred CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHH
Q 039792 625 WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYAS 703 (819)
Q Consensus 625 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 703 (819)
..+....-.+..-+...|++++|.++|+-+.. +.|... -|..|..+|-..|++++|+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~------------------- 90 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIY------------------- 90 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHH-------------------
Confidence 33444455566666777888888888888777 777654 45566666666666655554
Q ss_pred HHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 704 VVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 704 li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++.+++.++|+||.++..++..|...|+.++|.+-|+....
T Consensus 91 -----------------aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 91 -----------------AYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred -----------------HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999999997764
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.018 Score=54.89 Aligned_cols=187 Identities=13% Similarity=-0.014 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHhccCChHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHH
Q 039792 560 PNEFTFAALITAASNLGSLKHGQ-QFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTN 638 (819)
Q Consensus 560 p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 638 (819)
|....+..+-......++.+.-. ++.+.+.......+......-...|+..|++++|.+.......-+....+ ...+
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~ 147 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQIL 147 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHH
Confidence 33333433333333344433333 34445555444444444444566799999999999999884444443333 3445
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccc
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVW 713 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w 713 (819)
.+..+.+-|.+.+++|++ + -+..|.+.|..++.+ .+++.+|.-+|++|.+ ++..|....=-..+++.-+
T Consensus 148 lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~--- 221 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG--- 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc---
Confidence 677789999999999987 3 355677767766554 4679999999999988 7766654443444444433
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQ 754 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 754 (819)
+.+.|+...+.++..+|+++.+...+.-.--..|.-.++..
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 88999999999999999999998888877777788766544
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.39 E-value=0.0044 Score=57.75 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTT--WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
.+..+...|...|++++|...|++.. .++ ...|..+...|...|++++|+..+++..+ +.|+. ..+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 44555555666666666666666544 121 34677778888888888888888888887 66754 45666666
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCC
Q 039792 672 ACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSM 748 (819)
Q Consensus 672 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 748 (819)
++...|+...+..-++.... ..+.|...++++++++|++ |..+...+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~----------------------~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA----------------------LFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH----------------------HHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77777776666544444322 3466778888999999876 5555555655554
No 150
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0024 Score=59.13 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=60.1
Q ss_pred CCChHhHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC----------------CHHHHH
Q 039792 625 WKDVACWNSMICTNAHH-----GEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG----------------LIEDGL 683 (819)
Q Consensus 625 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------------~~~~a~ 683 (819)
.+|-.+|..++..|.++ |..+=....+..|.+-|+.-|..+|+.||..+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 44445555555555433 555555566667777777777777777776655421 356688
Q ss_pred HHHHHHHhcCCccCchHHHHHHHHhhcc
Q 039792 684 DHFQSMAGFGIEPGMEHYASVVSLLGRN 711 (819)
Q Consensus 684 ~~~~~m~~~g~~p~~~~y~~li~~l~r~ 711 (819)
+++++|..+|+-||.+++..+++.+|+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 8999999999999999999999999976
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.36 E-value=0.0085 Score=53.94 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=11.2
Q ss_pred HHHhccCChHHHHHHHHHHHHhC
Q 039792 570 TAASNLGSLKHGQQFHNHLIKLG 592 (819)
Q Consensus 570 ~~~~~~g~~~~a~~~~~~~~~~~ 592 (819)
..+...|++++|...++.+....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC
Confidence 33444455555555555554443
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.047 Score=51.71 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=63.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
-..|++++|+++|+.+.+.. +.|.+++--=+...-..|.--+|.+-+....+. +..|...|.-+.++|...|++++|.
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 34566667777777666554 445555554444444455444555544444443 2336666666666666666666666
Q ss_pred HHHhcCC--CC-ChHhHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCC
Q 039792 618 ETFGSTT--WK-DVACWNSMICTNAHH---GEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 618 ~~~~~~~--~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p 661 (819)
-.++++. .| ++..+..+...+... .+.+-|.++|.+.++ +.|
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 6666554 33 333333333332222 234555666666655 444
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.0025 Score=61.79 Aligned_cols=89 Identities=13% Similarity=0.235 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
..+.+++++|...|.+.. +.|.+-|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 445556666666665544 34555555555666666666666666555555 55554 3566666666666666666
Q ss_pred HHHHHHHHhcCCccCch
Q 039792 683 LDHFQSMAGFGIEPGME 699 (819)
Q Consensus 683 ~~~~~~m~~~g~~p~~~ 699 (819)
.+.|++.++ +.|+.+
T Consensus 169 ~~aykKaLe--ldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNE 183 (304)
T ss_pred HHHHHhhhc--cCCCcH
Confidence 555555443 344443
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.18 E-value=0.0096 Score=53.58 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=86.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCh----HhHHHHHH
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFD--SFITSALIDMYAKCGSLEDAYETFGSTT--WKDV----ACWNSMIC 636 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~li~ 636 (819)
|..++... ..++...+...++.+.+...... ....-.+...+...|++++|...|+... .+|. ...-.|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 47788888888888888654421 2233345678889999999999998877 2333 24555778
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
.+...|++++|+..++..... ......+......+...|++++|+..|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 889999999999999764321 122345667777899999999999998764
No 155
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.27 Score=50.36 Aligned_cols=106 Identities=16% Similarity=0.269 Sum_probs=81.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS 577 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 577 (819)
+.+..|.-+...|+...|.++-.+..-|+-.-|-..+.+|+..++|++-.++... +-.++-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445566667788889999998888888888899999999999999877765432 2234778888999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
..+|..+... + .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHH
Confidence 8888887765 1 124577889999999988765
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.16 E-value=0.65 Score=52.22 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCChH---HHHHHHHhcCCCCe---eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039792 500 SALIDAYSKCFSNK---DARLVFDEMNQRDI---VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAAS 573 (819)
Q Consensus 500 ~~li~~~~~~g~~~---~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 573 (819)
+.|++++-+.++.. +|+-+++.....+. .+--.+|..|.-.|-+..|.++|+.|--+.+.-|...|.. .+-+.
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~ 518 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAE 518 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHH
Confidence 45566666666544 23333333332222 2223345555555666666666665555445544444322 22233
Q ss_pred ccCChHHHHHHHHHHH
Q 039792 574 NLGSLKHGQQFHNHLI 589 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~ 589 (819)
..|.+..+...+....
T Consensus 519 t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHL 534 (932)
T ss_pred hcccchhHHHHHHHHH
Confidence 4445555554444433
No 157
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=97.15 E-value=0.00029 Score=59.66 Aligned_cols=36 Identities=53% Similarity=0.956 Sum_probs=27.0
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCcCCCC
Q 039792 769 GRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNTS 816 (819)
Q Consensus 769 g~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~ 816 (819)
|+||+++ |.|++||++||+.+.++ ++...||.|+++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~--------~~~~~~~~~~~~ 37 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELIN--------KMKEEGYVPDTK 37 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHH--------HHHHcCCcchhh
Confidence 8999988 99999999999994444 444455555543
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.14 E-value=0.0044 Score=65.13 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=72.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccc
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVW 713 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w 713 (819)
..+...|++++|+++|++.++ +.|+. ..|..+..+|.+.|++++|+..+++++.. .|+ ...|..+..++...+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg- 84 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE- 84 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC-
Confidence 445567788888888888877 66754 45667777788888888888888777762 232 223333333332222
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
+.+.|...++++++++|+++.....+..+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 778888889999999999998888876665443
No 159
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.4 Score=49.14 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=74.7
Q ss_pred HhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCch
Q 039792 398 KNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSL 477 (819)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 477 (819)
.+..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-..+-.. +-++..|-.++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888899988888888888899999999999998877765432 12346777777888777777
Q ss_pred HhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHH
Q 039792 478 ESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLV 518 (819)
Q Consensus 478 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 518 (819)
.+|..+... ..+..-+.+|.++|++.+|.+.
T Consensus 254 ~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPK----------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHH
Confidence 777666654 1224566777777777777544
No 160
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.09 E-value=0.47 Score=49.10 Aligned_cols=430 Identities=13% Similarity=0.123 Sum_probs=214.5
Q ss_pred hHhCCChHHHHHHHhcccCC---Cc------ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH--hcC
Q 039792 304 YSKCGRVKMARRLFDEIEVK---NI------ISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTS--CGS 372 (819)
Q Consensus 304 ~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~ 372 (819)
+-+.+++.+|.++|.++... +. +.-+.+|.+|..++ .+.....+....+ ..| ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHH
Confidence 34778999999999888643 21 12445666666443 3444444444443 234 4455566665 456
Q ss_pred CcchhhHHHHHHHHHHc--CCCC------------ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--------CCcchHH
Q 039792 373 VEALEQGRQVHAYSFKA--NIES------------DNFVKNSLVDMYAKCDSLTEARKVFDVMAD--------RNVVSYN 430 (819)
Q Consensus 373 ~~~~~~a~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~ 430 (819)
.+.+..|.+.+...... +..+ |-..-+..++++...|++.+++.++++|.+ -++.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 77788888777766544 2221 111223344455555555555555555432 1334444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh---CCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHH
Q 039792 431 AMIEGYSKEEKLSEALDLFHEMRV---GFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYS 507 (819)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 507 (819)
-++-.+.+. .|-++.+ ..+-||- |..++-...+....+. ---..+.|.......+++...
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pdy--YemilfY~kki~~~d~-------~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPDY--YEMILFYLKKIHAFDQ-------RPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChHH--HHHHHHHHHHHHHHhh-------chHHhhCcHHHHHHHHHHHHH
Confidence 433333221 2222211 1122221 1111111111000000 000122333333333333332
Q ss_pred hcC-----ChHHHHHHHHhcC-CCCe-eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccC
Q 039792 508 KCF-----SNKDARLVFDEMN-QRDI-VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP----NEFTFAALITAASNLG 576 (819)
Q Consensus 508 ~~g-----~~~~A~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g 576 (819)
-.- -+-.+.+.++.-- .|+- .....|+..+.+ +.+++..+-+.+....+.+ =..+|..++..+.+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1112222222111 1221 122233333333 4555555544444332222 2357888999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHhc----CCHHHHHHHHhcCCCCChHh---HHHHHH---HHHhC
Q 039792 577 SLKHGQQFHNHLIKLGLDFDS-----FITSALIDMYAKC----GSLEDAYETFGSTTWKDVAC---WNSMIC---TNAHH 641 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~---~~~li~---~~~~~ 641 (819)
+...|.+.+..+.-..+.... ..-..+.++.+.. -++.+=..+++.+...|+.. -.-|+. -+-..
T Consensus 313 ~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~ 392 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEI 392 (549)
T ss_pred hHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhc
Confidence 999999999888765443221 0112333444421 12333344555555444432 122222 24445
Q ss_pred CC-hHHHHHHHHHHHHcCCCCCch-h----HHHHHHHHHcc---CCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhccc
Q 039792 642 GE-PMKALLLFREMIIEGLEPNYI-T----FVGVLSACSHA---GLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNV 712 (819)
Q Consensus 642 g~-~~~A~~~~~~m~~~g~~p~~~-t----~~~ll~a~~~~---g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~ 712 (819)
|. -++|+.+++..++ +.|.+. . +..+=.+|..+ ..+.+-..+-+-+.+.|+.|-...=.-+.+.+..+-
T Consensus 393 g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 393 GQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred CCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 55 8899999999998 777543 2 22222344433 223333333333444788886443333333333331
Q ss_pred c-----hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 713 W-----NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 713 w-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
+ ++..+.....=+.+++| ++.+|-+++-......+|+||...+..+
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 1 66677667777788899 8999999999999999999999998743
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.07 E-value=0.0088 Score=51.62 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV 705 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 705 (819)
++..+...+...|++++|.+.|+++.+ ..|+. ..+..+..++...|++++|..+|+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------- 67 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLK--KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK-------------- 67 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--------------
Confidence 455666677777888888888887776 34442 2455566677777777777777666553
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCC---chhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMD---SGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
..|++ +.++..++.+|...|++++|.+.++++.+.
T Consensus 68 ----------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 68 ----------------------KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ----------------------HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33332 456667777777777777777777776654
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.04 E-value=0.013 Score=50.52 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----chhHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT--WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN----YITFV 667 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~ 667 (819)
.++..++..+.+.|++++|.+.|+.+. .|+ ...+..+...+.+.|++++|+..|+++.. ..|+ ...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHHH
Confidence 456678888999999999999999886 333 24667789999999999999999999987 4455 34577
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhc
Q 039792 668 GVLSACSHAGLIEDGLDHFQSMAGF 692 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a~~~~~~m~~~ 692 (819)
.+..++.+.|+.++|...++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7788899999999999999998873
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.00 E-value=0.0053 Score=50.08 Aligned_cols=89 Identities=17% Similarity=0.273 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA 676 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 676 (819)
..+...+...|++++|...|+... +.+...|..+...+...|++++|.+.|++..+ ..|+. .++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHHH
Confidence 344555556666666666666543 22334555666666666777777777776665 33433 3556666666666
Q ss_pred CCHHHHHHHHHHHHh
Q 039792 677 GLIEDGLDHFQSMAG 691 (819)
Q Consensus 677 g~~~~a~~~~~~m~~ 691 (819)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 777777666665543
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.97 E-value=0.0067 Score=49.60 Aligned_cols=79 Identities=10% Similarity=0.168 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHCCC-CCChhhHHHHHHHhhccCC--------hhhHHHHHHHHHHhCCCCchhHHH
Q 039792 228 TTIITGYVKSGRSDLSLNLFNQMRETDV-VHDKYLLSSVLSACSMLQF--------VGGGKQIHAHVLRRGMGMDVSVIN 298 (819)
Q Consensus 228 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 298 (819)
...|..+...|++.....+|+.+++.|+ .|+..+|+.+|.+.++..- +-....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456677778999999999999999999 9999999999998876532 334677899999999999999999
Q ss_pred HHHHHhHh
Q 039792 299 VLMDFYSK 306 (819)
Q Consensus 299 ~li~~~~~ 306 (819)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887654
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.97 E-value=0.0084 Score=63.00 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=60.7
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
...|+++.|...+..+++..+. +...+..+..+|.+.|++++|...+++.. ..+...|..+..+|...|++++|+.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455666666666666655443 45555566666666666666666666554 2345566666777777777777777
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHH
Q 039792 650 LFREMIIEGLEPNYITFVGVLSAC 673 (819)
Q Consensus 650 ~~~~m~~~g~~p~~~t~~~ll~a~ 673 (819)
.|++.++ +.|+...+...+..|
T Consensus 92 ~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 92 ALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHH
Confidence 7777776 667665555444433
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.95 E-value=0.46 Score=48.29 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=59.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCChHHHHHHHHHHHHhC--CCC--chhHHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQQR-----PNEF-TFAALITAASNLGSLKHGQQFHNHLIKLG--LDF--DSFITSA 602 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~ 602 (819)
+...+.+.|++++|.++|++....... .+.. .|...+-++...|+...|...++...... +.. ...+...
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 456677778888888888877654322 2222 22333335566788888888888776542 322 2345566
Q ss_pred HHHHHHh--cCCHHHHHHHHhcCCCCChHhHHHH
Q 039792 603 LIDMYAK--CGSLEDAYETFGSTTWKDVACWNSM 634 (819)
Q Consensus 603 li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~l 634 (819)
|+++|-. ...+++|..-|+.+.+.|..--+.|
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 7777754 3467888888888887775443333
No 167
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.95 E-value=0.54 Score=47.57 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=43.1
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHHhCCCcCCCceeEEE
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACN-SMWADAKQVRKKMDLDGLMKEAGRSWIE 774 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~~~~g~s~i~ 774 (819)
+...++..++.+...+|. .+.|.+|+.+-... |+-.++.+...+... -..+|.++--.
T Consensus 344 e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~--APrdPaW~adg 402 (531)
T COG3898 344 EFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK--APRDPAWTADG 402 (531)
T ss_pred chHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc--CCCCCcccccC
Confidence 777888888999999886 57889999998776 998888888765543 23456655333
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.93 E-value=0.0067 Score=49.46 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
+..+...|...|++++|.+.|+... ..+..+|..+...+...|+.++|...+++..+
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 3334444444444444444444322 22333455555555556666666666655554
No 169
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.91 E-value=0.017 Score=60.79 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=87.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChH
Q 039792 556 SQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL--GLDFDSFITSALIDMYAKCGSLEDAYETFGSTT----WKDVA 629 (819)
Q Consensus 556 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~ 629 (819)
.+.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++.++++.=. -||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345667777888888888877888888777766653 222233445678888888888888888876533 57888
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHcc
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHA 676 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 676 (819)
++|.|+..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888877777666777776666666655
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.89 E-value=0.0017 Score=51.96 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHHHHcCCCC---CchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhh
Q 039792 641 HGEPMKALLLFREMIIEGLEP---NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVEL 717 (819)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~ 717 (819)
.|++++|+.+++++.+ ..| +...+..+..++.+.|++++|.++++.
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~----------------------------- 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK----------------------------- 50 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-----------------------------
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------------------
Confidence 5788999999999988 445 334455578889999999888888765
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 039792 718 GRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKK 758 (819)
Q Consensus 718 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 758 (819)
.+.+|.++.....++..|.+.|+|++|.+++++
T Consensus 51 --------~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 51 --------LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp --------HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred --------hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 223344556667779999999999999999875
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.89 E-value=0.15 Score=54.68 Aligned_cols=113 Identities=12% Similarity=0.210 Sum_probs=62.3
Q ss_pred cchhhHHHHHHHhcCChhHHHHHHhcCCCCCe--eeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhh
Q 039792 193 VYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTA--VSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACS 270 (819)
Q Consensus 193 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 270 (819)
...+.+=+.-|...|.+++|.++ .-+.+ ..|.-|...-..+=+++-|.+.|.+
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~i----aclgVv~~DW~~LA~~ALeAL~f~~ARkAY~r--------------------- 610 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQI----ACLGVTDTDWRELAMEALEALDFETARKAYIR--------------------- 610 (1081)
T ss_pred cccccccchhhhhccchhhhhcc----cccceecchHHHHHHHHHhhhhhHHHHHHHHH---------------------
Confidence 34444455556667777776643 12222 2355444433333344444444433
Q ss_pred ccCChhhH--HHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHH
Q 039792 271 MLQFVGGG--KQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLF 348 (819)
Q Consensus 271 ~~~~~~~a--~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 348 (819)
.++..-- ..-++.+.+.|-.|+.... ...++-.|++.+|-++|.+ +|....|+++|
T Consensus 611 -VRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmy 668 (1081)
T KOG1538|consen 611 -VRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMY 668 (1081)
T ss_pred -HhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHH
Confidence 3332222 2234556667777776543 3445667888888888754 66777788888
Q ss_pred HHHH
Q 039792 349 TEMT 352 (819)
Q Consensus 349 ~~m~ 352 (819)
..|+
T Consensus 669 TDlR 672 (1081)
T KOG1538|consen 669 TDLR 672 (1081)
T ss_pred HHHH
Confidence 7775
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.0078 Score=58.43 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=81.5
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---HhHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDV---ACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A 647 (819)
-..+.+++++|...|..+++..+. |.+.|.--..+|.+.|.++.|++-.+....-|. .+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 356778899999999999887765 777777788899999999999988888775444 4788899999999999999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHH
Q 039792 648 LLLFREMIIEGLEPNYITFVGVLS 671 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~~t~~~ll~ 671 (819)
++.|++.++ +.|+..+|..=|.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 999999998 9998877765555
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.8 Score=49.82 Aligned_cols=127 Identities=10% Similarity=0.143 Sum_probs=68.5
Q ss_pred CCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----cchHHHHHHHhcCCcchhhHHHH
Q 039792 307 CGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPD----DFACSSVLTSCGSVEALEQGRQV 382 (819)
Q Consensus 307 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 382 (819)
-|.+++|++++-++.++|.. |..+.+.|++-...++++. -|-..| ...++.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999888887753 4555566666655555433 111111 12344444444444555555555
Q ss_pred HHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 039792 383 HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHE 451 (819)
Q Consensus 383 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (819)
+..--. ...++.+|.+..++++-+.+-..+++ |....-.|...+.+.|.-++|.+.|-+
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 443211 12344555555555555555555543 333444556666666766666665543
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.85 E-value=0.013 Score=47.98 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCchhHHHHHHHHHccC--------CHHHHHHHHHHHHhcCCccCchHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGL-EPNYITFVGVLSACSHAG--------LIEDGLDHFQSMAGFGIEPGMEHY 701 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~y 701 (819)
-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+-.+.. ++-+.+.+++.|...+++|+.++|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777777999999999999999999 899999999999876543 345678899999999999999999
Q ss_pred HHHHHHhhc
Q 039792 702 ASVVSLLGR 710 (819)
Q Consensus 702 ~~li~~l~r 710 (819)
+.++..+-+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987754
No 175
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.84 E-value=0.017 Score=53.62 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHhc-----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHH
Q 039792 559 RPNEFTFAALITAASN-----LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNS 633 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 633 (819)
..|..+|..++..+.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 4566667777666643 45666667778888899999999999999998876 4322 11111111
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCH-HHHHHHHHHHHh-cCCcc
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLI-EDGLDHFQSMAG-FGIEP 696 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~-~g~~p 696 (819)
..- ...+-+-|++++++|...|+.||..|+..|++.+.+.+.. .+..+..--|-+ .++.|
T Consensus 112 -F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP 173 (228)
T PF06239_consen 112 -FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINP 173 (228)
T ss_pred -hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCC
Confidence 111 1234567899999999999999999999999999887753 333333333334 34443
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.83 E-value=0.031 Score=61.43 Aligned_cols=135 Identities=13% Similarity=0.025 Sum_probs=87.5
Q ss_pred CCChHhHHHHHHHHHh--C---CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc--------CCHHHHHHHHHHHH
Q 039792 625 WKDVACWNSMICTNAH--H---GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA--------GLIEDGLDHFQSMA 690 (819)
Q Consensus 625 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 690 (819)
..|...|...+.+... . ++.++|..+|++.++ ..|+. ..|..+..++... +.+..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4455666666655432 2 236788899999988 78875 3455444433221 12334444444433
Q ss_pred hc-CCccCchHHHHH-HHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 039792 691 GF-GIEPGMEHYASV-VSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 691 ~~-g~~p~~~~y~~l-i~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 764 (819)
.. ....+...|..+ +..+.+. +.+.|...++++++++| +...|..++.+|...|+.++|.+.+++......
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g--~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKG--KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 31 222233444433 2222332 89999999999999999 578999999999999999999999998866443
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.83 E-value=0.027 Score=56.96 Aligned_cols=138 Identities=13% Similarity=0.078 Sum_probs=78.7
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA-ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4455555555555666666666665322 1222333322222 22345566677777777765 3336677777777777
Q ss_pred hcCCHHHHHHHHhcCCC--CC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 039792 609 KCGSLEDAYETFGSTTW--KD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLS 671 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 671 (819)
+.|+.+.|+.+|++... +. ...|...+.--.+.|+.+.+.++.+++.+ .-|+...+..+.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 77888888888777652 22 24677777777777777777777777776 4555444333333
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.82 E-value=0.0025 Score=48.03 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+.+.|...++++++.+|+++..+..++.+|...|++++|..+++++.+.
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999999999999988753
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.81 E-value=0.052 Score=59.74 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=44.8
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+...|..+...+...|++++|...+++.++ +.|+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445666666666667777777777777777 557666777777777777777777777766654
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.81 E-value=0.57 Score=47.46 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=129.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH--HHhcCCHHHHHHHHhcCC-CCChH--hHHHHHHHHHhCCChHHHH
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM--YAKCGSLEDAYETFGSTT-WKDVA--CWNSMICTNAHHGEPMKAL 648 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~-~~~~~--~~~~li~~~~~~g~~~~A~ 648 (819)
-.|+-..|.+.-.+..+. +..|..-...|+.+ -.-.|+.++|.+-|+.|. .|... -...|.-.-.+.|..+.|.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 355666666655544321 22233333333332 335788999999998887 44333 2334444446678999999
Q ss_pred HHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhccc----chhhhHHHHH
Q 039792 649 LLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNV----WNVELGRYAA 722 (819)
Q Consensus 649 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~----w~~~~a~~~~ 722 (819)
.+-++.-. .-|.. -.+..++...+..|+|+.|+++++.-.. .-+.+++..-.--+-+-.++. -|-..+...+
T Consensus 175 ~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 175 HYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99888876 67764 5788999999999999999999999888 777777543221111111110 0566778889
Q ss_pred HHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 723 EMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 723 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.++.++.|+-.-.-+.-+..|++.|+..++..+++.+=+.
T Consensus 253 ~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 253 LEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 9999999998888889999999999999999999988543
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.79 E-value=0.035 Score=51.70 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=48.1
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN--EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
.+..+...+...|++++|...|++.......+. ...+..+...+.+.|+++.|...+...++..+. +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 455555556666777777777666665332221 244555555666666666666666666654433 34444455555
Q ss_pred HHhcCCHHHH
Q 039792 607 YAKCGSLEDA 616 (819)
Q Consensus 607 ~~~~g~~~~A 616 (819)
|...|+...+
T Consensus 116 ~~~~g~~~~a 125 (172)
T PRK02603 116 YHKRGEKAEE 125 (172)
T ss_pred HHHcCChHhH
Confidence 5555554433
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.76 E-value=0.0052 Score=49.17 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=7.1
Q ss_pred HHHHccCCHHHHHHHHH
Q 039792 671 SACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 671 ~a~~~~g~~~~a~~~~~ 687 (819)
.+|.+.|++++|+++|+
T Consensus 66 ~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHTT-HHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHh
Confidence 34444444444444443
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.09 Score=49.95 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=98.9
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH-----H
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSA-----L 603 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 603 (819)
.-+.++..+...|.+.-.+..+++.++...+-++.....+.+.-.+.|+.+.|...++...+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556677777788888888888888876666777788888888899999999999987776433333333333 3
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHH
Q 039792 604 IDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFV 667 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 667 (819)
...|.-..++..|...|++++ ..|++.-|.-.-+....|+..+|++..+.|++ ..|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 344566778888888888777 44566666666666667888999999999988 667655444
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.75 E-value=0.02 Score=60.33 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHhhccCchHhHHHHHHHHHHh--CCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC----CCeeehh
Q 039792 458 PPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY--GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ----RDIVVWN 531 (819)
Q Consensus 458 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 531 (819)
+.+...+..+++.+....+++.+..++-.+... ....-+.+..++|..|.+.|..+.+..+++.=.. ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444444444444444444444444332 1111222223444444444444444444443332 4444455
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNL 575 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 575 (819)
.|++.+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 55555555555555555555555444445555555444444443
No 185
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.58 Score=51.51 Aligned_cols=339 Identities=12% Similarity=0.032 Sum_probs=180.7
Q ss_pred HCCCCCChhhHHH-----HHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCC---hHHHHHHHhcccC-
Q 039792 252 ETDVVHDKYLLSS-----VLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGR---VKMARRLFDEIEV- 322 (819)
Q Consensus 252 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~- 322 (819)
.-|++.+-.-|.. +|+-+...+.+..|.++-..+-..-..- ..++.....-+.+..+ -+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466665555543 4556666677777777766553221111 5667777777776632 3334444444544
Q ss_pred -CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC----CCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhH
Q 039792 323 -KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGW----KPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFV 397 (819)
Q Consensus 323 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 397 (819)
...++|..+.+--.+.|+++-|..+++.=...+- -.+..-+...+.-+...|+.+....++-++.+.-.. ..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~---s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR---SS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---HH
Confidence 4567888888888888998888887765332221 113344555666677777777766666555432110 00
Q ss_pred HhHHhhhhhcCCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCChhHHHHHHHH--HHh-CCCCCChhHHHHHHHHhhc
Q 039792 398 KNSLVDMYAKCDSLTEARKVFDVMAD-RNVVSYNAMIEGYSKEEKLSEALDLFHE--MRV-GFVPPGLLTFVSLLGLSSS 473 (819)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~-~g~~p~~~t~~~ll~~~~~ 473 (819)
+... ..+...|..++.+... .|..+ +-+.| ..++-.+++.-|.. ... .-+.+-.......-++|++
T Consensus 581 l~~~------l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 581 LFMT------LRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HHHH------HHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 0000 1122233334433221 11111 11111 12222222221111 000 0011112222333344444
Q ss_pred cCchH-hHHH---------HHHHHH-HhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCC
Q 039792 474 VFSLE-SSKQ---------IHGLII-KYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLE 542 (819)
Q Consensus 474 ~~~~~-~a~~---------i~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 542 (819)
..... +++. +.+.+. +.|......+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..++
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhh
Confidence 33311 1111 111111 123333334445555666777888888888888888888888778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 039792 543 NEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
+++-+++-+.+.. +.-|.-+..+|.+.|+.++|..++.+.-.. .-.+.+|.++|++.+|.++
T Consensus 731 weeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 731 WEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 8877666555431 455666788888888888888877543211 1467788888888888664
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.69 E-value=0.7 Score=46.96 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHHH
Q 039792 511 SNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNL-GSLKHGQQFHNHLI 589 (819)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~ 589 (819)
++++|...++. .+..|...|++..|-..+.++- ..+... |+++.|.+.+....
T Consensus 89 ~~~~Ai~~~~~-----------A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 89 DPDEAIECYEK-----------AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp THHHHHHHHHH-----------HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHH
Confidence 55555555544 3456666666666655555443 344455 67777777776655
Q ss_pred Hh----CCCC--chhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 590 KL----GLDF--DSFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 590 ~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
+. + .+ -..++..+...+.+.|++++|.++|++
T Consensus 143 ~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 143 ELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 42 1 11 122333445555555666666555554
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.63 E-value=0.0029 Score=48.24 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++.+|+|+.++..|+.+|.+.|++++|.++++++..
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999986654
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.058 Score=51.19 Aligned_cols=163 Identities=11% Similarity=-0.023 Sum_probs=118.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC--ChHh--------HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTTWK--DVAC--------WNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGV 669 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 669 (819)
+++|+..+.-..-+++-...++.-..| .+.. -++++..+.-+|.+.-.+.++.+.++..-+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455666665555555555555543322 2223 356777777788899999999999984433355667888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc----hhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 670 LSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW----NVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 670 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
.+.-.+.|+.+.|..+|+...+..-.-+..+.+.++..-.+.+. |...+.....+.++.||.++.+-++-+-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88899999999999999988774334444555555543332211 77888888999999999999999988888888
Q ss_pred CCCchHHHHHHHHHHhC
Q 039792 746 NSMWADAKQVRKKMDLD 762 (819)
Q Consensus 746 ~g~~~~a~~~~~~m~~~ 762 (819)
.|+..+|.++.+.|.++
T Consensus 299 lg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999864
No 189
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.51 E-value=0.034 Score=56.30 Aligned_cols=142 Identities=11% Similarity=0.013 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhcCC---CCChHhHHHHHHHH
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK-CGSLEDAYETFGSTT---WKDVACWNSMICTN 638 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 638 (819)
.+|..++..+.+.+..+.|+.+|..+.+.+ ..+..+|.....+-.. .++.+.|.++|+.+. ..+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467888888888889999999999998543 2355566666666444 456666999999877 67888999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCc---hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHh
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNY---ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLL 708 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l 708 (819)
...|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+++....+.+++.+. -|+......+++-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9999999999999999863 33333 37899999888899999999999999872 23344444455544
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.51 E-value=0.0067 Score=46.33 Aligned_cols=48 Identities=21% Similarity=0.136 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCC-CchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNS-MWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++++|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 18 ~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 6777777888889999999999999999999999 79999999987764
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.021 Score=57.69 Aligned_cols=88 Identities=11% Similarity=0.048 Sum_probs=52.1
Q ss_pred HHccCCHHHHHHHHHHHHh---cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCc
Q 039792 673 CSHAGLIEDGLDHFQSMAG---FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMW 749 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~---~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 749 (819)
..+.|++.+|.+.+.+.+. ....|+...|....-..-|-+ ++..|..-.+.+++++|.-..+|..-++.|...++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg-rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG-RLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC-CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666653 122222222322211111111 556666677777788777777777778888888888
Q ss_pred hHHHHHHHHHHh
Q 039792 750 ADAKQVRKKMDL 761 (819)
Q Consensus 750 ~~a~~~~~~m~~ 761 (819)
++|.+-+++..+
T Consensus 338 e~AV~d~~~a~q 349 (486)
T KOG0550|consen 338 EEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHh
Confidence 888777666544
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.42 E-value=0.013 Score=44.69 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=52.1
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccC-CHHHHHHHHHHHHh
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAG-LIEDGLDHFQSMAG 691 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 691 (819)
+...|..+...+...|++++|+..|++.++ +.|+. ..|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456788888889999999999999999988 67865 56888888888888 68899888887765
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.38 E-value=0.27 Score=52.75 Aligned_cols=202 Identities=12% Similarity=0.119 Sum_probs=105.7
Q ss_pred HHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHH
Q 039792 184 VIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLS 263 (819)
Q Consensus 184 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 263 (819)
+.+.|-.|+... +...++-.|++.+|-++|. +.|....|+++|.+|+--
T Consensus 626 ~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF---------- 674 (1081)
T KOG1538|consen 626 RKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF---------- 674 (1081)
T ss_pred HHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH----------
Confidence 455666666543 3445666788888888775 466777777777776521
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhH
Q 039792 264 SVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDRE 343 (819)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 343 (819)
-..+-+...|+-++-+.+.+.-.+ ...++.--.+-..++...|+.++|..+. ..+|-.+-
T Consensus 675 D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~ 734 (1081)
T KOG1538|consen 675 DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDM 734 (1081)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHH
Confidence 122333334444433333221111 0111111122334455566666665543 22333333
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC
Q 039792 344 AMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD 423 (819)
Q Consensus 344 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (819)
++++-+++-. .+..+...+-..+.+...+..|-++|..|-. ..+++++....+++++|..+-++.++
T Consensus 735 lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 735 LIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 3444333322 1333444444445556666677777765532 25678888999999999999998887
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHH
Q 039792 424 RNVVSYNAMIEGYSKEEKLSEALDLF 449 (819)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~ 449 (819)
--...|-.-..-++...++++|.+.|
T Consensus 802 ~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 802 FKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred ccccccchHHHHhhhhhhHHHHHHHH
Confidence 22222223333344444444444443
No 194
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.34 E-value=0.03 Score=51.88 Aligned_cols=94 Identities=12% Similarity=0.052 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVS 706 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 706 (819)
..|..+...+...|++++|+..|++.....-.|. ..++..+...+.+.|++++|...++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~------------------- 96 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF------------------- 96 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH-------------------
Confidence 4556666666667777777777777765221111 1245566666666666666665554
Q ss_pred HhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHH-------hCCCchHHHHHHHH
Q 039792 707 LLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFA-------CNSMWADAKQVRKK 758 (819)
Q Consensus 707 ~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-------~~g~~~~a~~~~~~ 758 (819)
++++++|.+...+..++.+|. ..|++++|...+++
T Consensus 97 -----------------~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 97 -----------------QALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred -----------------HHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 444555666666666666666 77887766555543
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.30 E-value=0.069 Score=45.58 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=48.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 633 SMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+..++-..|+.++|+.+|++....|+.... ..+..+.+.+...|++++|..+|++...
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556778889999999999999998877653 4677888899999999999999887765
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.29 E-value=0.55 Score=42.42 Aligned_cols=124 Identities=14% Similarity=0.032 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C---ChHhHHH
Q 039792 559 RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW--K---DVACWNS 633 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~ 633 (819)
.|+..--..|..+....|+..+|...+++...--+.-|..+.-.+.++....+++..|...++...+ | .+..--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555556666666666666666666666554555666666666666666666666666655431 1 1222334
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHH
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLD 684 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 684 (819)
+...|...|++.+|..-|+.... .-|+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666666667777776666 55555443333344455555555443
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.24 E-value=0.018 Score=43.26 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=37.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+...+.+.|++++|++.|++.++ ..|+. ..+..+..++.+.|++++|..+|+.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556677777777777777776 44654 4566666677777777777777776654
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.22 E-value=0.11 Score=44.39 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=62.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQQRPN--EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF--DSFITSALIDMYA 608 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~ 608 (819)
+..++-..|+.++|+.+|++....|.... ...+..+-+.+...|++++|..+++......+.. +......+.-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566677888888888888888776654 3356666777788888888888888777654321 1222223344556
Q ss_pred hcCCHHHHHHHHhcCCCCChHhHH
Q 039792 609 KCGSLEDAYETFGSTTWKDVACWN 632 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~~~~~~~~ 632 (819)
..|+.++|.+.+-....++...|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ 110 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYR 110 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677777777665443333333333
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.20 E-value=0.066 Score=53.17 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=64.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVV 705 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li 705 (819)
|+.-+.-+.+.|++++|+..|+.+++ ..|+. ..+..+..+|...|++++|...|+.+.+ +...
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---------- 213 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---------- 213 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----------
Confidence 44444444566888899989999888 56765 3677777788888888888888877765 3322
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
|..+.++..++.+|...|++++|.+++++..+
T Consensus 214 ------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 214 ------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred ------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22344555566666667777777777665543
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.17 E-value=0.012 Score=45.52 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
+.+.|...++++++++|+++..+..++.+|...|+|++|.+.+++..+.+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 67788888999999999999999999999999999999999999887643
No 201
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.16 E-value=0.079 Score=49.08 Aligned_cols=79 Identities=9% Similarity=0.052 Sum_probs=44.5
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRP--NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
.|..+...+...|++++|+..|++.......| ...++..+-..+...|++++|...++...+.... ....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34455556666677777777777665432222 1235566666666677777777777666654322 23344444444
Q ss_pred HH
Q 039792 607 YA 608 (819)
Q Consensus 607 ~~ 608 (819)
|.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.12 E-value=0.023 Score=43.15 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=30.5
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
..|++++|..+++.+.+..+. +..+...+..+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666666666666665544 55555566666666666666666666665
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.28 Score=48.26 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=74.8
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCCC
Q 039792 589 IKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH---GEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 589 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~ 662 (819)
...++. |..-|-.|...|...|+.+.|..-|.+.. .+|+..+..+..++... ....++..+|++++. .+|+
T Consensus 149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~ 225 (287)
T COG4235 149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPA 225 (287)
T ss_pred HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCc
Confidence 344444 78888888888888888888888887655 56666666666655433 246778889999988 7887
Q ss_pred chh-HHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 663 YIT-FVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 663 ~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.++ ...|...+...|++.+|...|+.|.+
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 765 45555588899999999999999987
No 204
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=1.5 Score=45.00 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=124.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHhCCCCc-h----------hHHHH
Q 039792 536 GYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA--ASNLGSLKHGQQFHNHLIKLGLDFD-S----------FITSA 602 (819)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~-~----------~~~~~ 602 (819)
++.-.|++++|...--...+. .++ ..+...+++ +...++.+.+...+++.++.++.-. . ..+.-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 355567777776655544432 111 112222222 2345566777777776665543211 0 01111
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-------CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTW-------KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACS 674 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~ 674 (819)
=.+...+.|++.+|.+.+.+... ++...|-.......+.|+.++|+.-.++..+ +.|..+ .|..-..++.
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHH
Confidence 23445678899999999887662 2344566666677788999999998888876 666542 4555556777
Q ss_pred ccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcc---cc-----------hhhhHHHHHHHHHccCCCC-chh---
Q 039792 675 HAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRN---VW-----------NVELGRYAAEMAISIDPMD-SGS--- 735 (819)
Q Consensus 675 ~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~---~w-----------~~~~a~~~~~~~~~~~p~~-~~~--- 735 (819)
..++|++|.+.+++..+..-.+. -.++.-..-.|-++ -| +.+......+.++...|+- +..
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~e 412 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKE 412 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHH
Confidence 78899999999988876322222 22333333333322 22 4445555556666667752 222
Q ss_pred ----HHHHHHHHHhCCCchHHHHH
Q 039792 736 ----YTLLSNTFACNSMWADAKQV 755 (819)
Q Consensus 736 ----~~~l~~~y~~~g~~~~a~~~ 755 (819)
.-..++.|...++..++.+.
T Consensus 413 aE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 413 AEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhc
Confidence 44577778877777776664
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.74 E-value=1.4 Score=43.46 Aligned_cols=58 Identities=21% Similarity=0.080 Sum_probs=35.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-HH---HHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQQRPNE-FT---FAALITAASNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
..+...|++++|.+.|+++...- |+. .. .-.+..++.+.++++.|...++..++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 34455677777777777776642 222 11 133445666777777777777777766544
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.72 E-value=0.39 Score=47.33 Aligned_cols=172 Identities=10% Similarity=-0.015 Sum_probs=102.8
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CCee-e---hhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 039792 502 LIDAYSKCFSNKDARLVFDEMNQ--RDIV-V---WNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN- 574 (819)
Q Consensus 502 li~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~- 574 (819)
....+.+.|++++|.+.|+.+.. |+.. . .-.+..+|.+.+++++|...|++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445667889999999988875 3321 1 123556788899999999999999875322222333333333321
Q ss_pred -c---------------CC---hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHH
Q 039792 575 -L---------------GS---LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMI 635 (819)
Q Consensus 575 -~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 635 (819)
. .+ ...|...++.+++. |-...-..+|...+..+...=..---...
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01 12333444444443 33333344444333322211000011345
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC----chhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPN----YITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
.-|.+.|.+..|+.-++.+++ --|+ ......+..+|.+.|..++|..+...+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~--~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLR--DYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 568899999999999999997 3454 3457788889999999999988876554
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.61 E-value=0.061 Score=54.35 Aligned_cols=128 Identities=16% Similarity=0.075 Sum_probs=92.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--ChH
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIK----LGLD-FDSFITSALIDMYAKCGSLEDAYETFGSTT-------WK--DVA 629 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~ 629 (819)
.|..|-+.|.-.|+++.|...++.-.. .|-. .....+..|.+++.-.|+++.|.+.++... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666677899999988875432 3322 134566778889999999999999987543 22 234
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH----cC-CCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII----EG-LEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+.-+|...|.-..++++|+.++++-+. .+ ..-....+.+|..++...|..++|+.+...-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 667788888888899999998877543 11 112335789999999999999999988776655
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.56 E-value=4.7 Score=44.22 Aligned_cols=127 Identities=7% Similarity=-0.026 Sum_probs=67.2
Q ss_pred cCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCC----hhhHHHHHHHhhccCChhhHHHH
Q 039792 206 NGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHD----KYLLSSVLSACSMLQFVGGGKQI 281 (819)
Q Consensus 206 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 281 (819)
.|++++|++++-.+..+|.. |..+.+.|++-...++++. .|-..| ...|..+-..++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999888777653 5666667777666655532 111111 12455555555555555555554
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHH
Q 039792 282 HAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTE 350 (819)
Q Consensus 282 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (819)
+..--. ...++..|.+..++++-+.+-+.+++. ......|...+.+.|.-++|.+.|-+
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHh
Confidence 432211 112344444444444444444444432 23344555566666666666655533
No 209
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.42 E-value=0.16 Score=48.78 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=75.1
Q ss_pred HHHHHhcCC--CCChHhHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC-----------
Q 039792 616 AYETFGSTT--WKDVACWNSMICTNAHH-----GEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG----------- 677 (819)
Q Consensus 616 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 677 (819)
.+..|..+. +.|-.+|-+++..+..+ +.++=....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 56777888887777654 456666677888999999999999999998776544
Q ss_pred -----CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc
Q 039792 678 -----LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN 711 (819)
Q Consensus 678 -----~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~ 711 (819)
.-+-++.++++|..+|+.||.++-..+++.+||.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence 2344789999999999999999999999999997
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.39 E-value=0.94 Score=41.01 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=77.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHhc---CCccCch-HHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAGF---GIEPGME-HYASVV 705 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---g~~p~~~-~y~~li 705 (819)
--.|..+....|+..+|...|++... |+-. |......+.++....++...|...++++-++ +-.|+.. .|+-.+
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 34456666677777777777777764 4443 4456667777777777777777777777662 2334422 233333
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
...| ..+.|+.+++.++.-.|+ +..-...+..+++.|+.++|..-...+-
T Consensus 171 aa~g----~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 171 AAQG----KYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhcC----CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3333 345677777777777774 5566666777888887777766554443
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.37 E-value=0.099 Score=47.06 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCccCchH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAG-----FGIEPGMEH 700 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 700 (819)
...++..+...|++++|+.+++++.. +.| |...|..++.+|...|+..+|.++|+++.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44566667778888888888888887 667 446788888888888888888888777643 577777544
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.22 E-value=0.081 Score=40.77 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=39.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..|.+.+++++|++.+++++. +.|+. ..+.....++.+.|++++|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456677777888888888777 66754 4566666677777888877777777765
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.10 E-value=0.25 Score=49.11 Aligned_cols=49 Identities=16% Similarity=0.017 Sum_probs=20.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFD--SFITSALIDMYAKCGSLEDAYETFGST 623 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 623 (819)
.|++++|...|+.+++..+... ...+-.+...|...|++++|...|+.+
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555444444444333211 123333444444444444444444433
No 214
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=8.2 Score=43.61 Aligned_cols=119 Identities=19% Similarity=0.016 Sum_probs=59.0
Q ss_pred hhHHHHHHHcCCChhhHHHHHhccCCCCcchHHHHH---HHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q 039792 90 ANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLV---SMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQ 166 (819)
Q Consensus 90 ~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 166 (819)
...-|..+.+...++.|..+-..-..+....-+.+. .-+-+.|++++|...|-+-+ .-+.| +.+++-+-.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHHhcC
Confidence 345566666666666666665544332222222222 12456788888888776541 11223 233333322
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCC
Q 039792 167 LGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLM 220 (819)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 220 (819)
..... ..-...+.+.+.|+. +..--+.|++.|.|.++.+.-.+..+...
T Consensus 410 aq~Ik----nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIK----NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHH----HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 22111 111222333455543 33444567777777777777666665544
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=94.91 E-value=0.62 Score=49.06 Aligned_cols=47 Identities=13% Similarity=-0.044 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+.+.|...++++..++|+.+..|...+++.+-+|+.++|.+..++..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45566666666666666666666666666666666666666666543
No 216
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.90 E-value=5.8 Score=41.48 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=47.2
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHH
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYAS 703 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 703 (819)
+..+|++.++.-.-.-+.+ +.|+..+|..+.-+......+++|+.++.++ +|+...+++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 3467888888877777766 8999999999999999999999999999764 566655544
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.81 E-value=0.14 Score=53.61 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCh----HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT--WKDV----ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGV 669 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 669 (819)
+...++.+..+|.+.|++++|...|++.. .|+. .+|..+..+|...|+.++|++.+++.++.+ .| .|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHHH
Confidence 56778888899999999999999998865 4543 358899999999999999999999998831 11 23222
Q ss_pred HH--HHHccCCHHHHHHHHHHHHhcCC
Q 039792 670 LS--ACSHAGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 670 l~--a~~~~g~~~~a~~~~~~m~~~g~ 694 (819)
.. .+......++..++++.+...|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 22 12233344567777777777654
No 218
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.72 Score=45.30 Aligned_cols=123 Identities=11% Similarity=0.010 Sum_probs=85.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW 713 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w 713 (819)
.......|+..+|..+|+...+ ..|. ...-..+..+|...|+.+.|..++..+-..--.........-+..+.++.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa- 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA- 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh-
Confidence 3455677899999999999887 5564 35677778889999999999999887643111111111223345555541
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+... ...++.-+..+|+|...-..|+..|...|+.++|.+.+=.+..
T Consensus 218 ~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 218 ATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred cCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222 2345666778999999999999999999999999997666644
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.60 E-value=0.47 Score=48.25 Aligned_cols=93 Identities=9% Similarity=0.000 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---------CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-----Cc
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT---------WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-----NY 663 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~ 663 (819)
..|..|.+.|--.|+++.|+..-+.-. ...-..+..+..++.-.|+++.|.+.|+.-...-+.. ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666778888876554211 1122356677788888888888888887754321221 12
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 664 ITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 664 ~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
....+|.+.|.-...+++|+.++.+-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777888887776644
No 220
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.59 E-value=9.3 Score=45.04 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=62.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCh
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFT--FAALITAASNLGSL 578 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~ 578 (819)
-..-+|.++|+.++|.+ +|...|++.+|+.+-.+|.. .-|... -..|..-+...++.
T Consensus 957 ~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccc
Confidence 34457778888888854 55567888898888877652 222222 24566667777777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 039792 579 KHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKD 627 (819)
Q Consensus 579 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 627 (819)
-+|-++..+.... | .-.+..|++...+++|.++-......|
T Consensus 1016 ~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1016 YEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred hhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 7776666554431 1 224566788888899988776655443
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.39 E-value=0.5 Score=42.44 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.+...+++++..+|-|...|..|..+|...|+..+|.+++++++.
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999988753
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.36 E-value=7.7 Score=40.48 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=66.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhH-HHHHHHHH
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLG-LDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACW-NSMICTNA 639 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~-~~li~~~~ 639 (819)
.|...++...+..-++.|+.+|.++.+.+ ..+++.++++++..++ .|+..-|.++|+-.. -+|...| +-.+.-+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34455555555566666666666666665 4456666666666554 355566666665433 3343333 33444445
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 640 HHGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.-++-+.|..+|+..+++ +.-+ ...|..++.-=+.-|++..+..+=+.|.+
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 556666666666644431 2222 23455555555555555555555554444
No 223
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=12 Score=42.46 Aligned_cols=120 Identities=10% Similarity=0.048 Sum_probs=75.7
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCCCCCeee---HHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVS---WTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSM 271 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 271 (819)
..-.-++++++..-++.|..+-+.-....... ...-.+-+.+.|++++|...|-+-... +.| ..++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 34455667777777777777765432211111 112233456789999998887665432 222 234555555
Q ss_pred cCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc
Q 039792 272 LQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE 321 (819)
Q Consensus 272 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 321 (819)
......--..++.+.+.|+. +...-+.|+..|.+.++.+.-.++.+...
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55555666677777888875 44455778899999999888888777665
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.25 E-value=8 Score=40.29 Aligned_cols=173 Identities=21% Similarity=0.158 Sum_probs=79.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQ---QRPNEFTFAALITAASN---LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
-+|....+++.-+++.+.|.... +.-....-....-++.+ .|+.++|++++..+....-.+++.++..+...|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34555566666666666655421 00011111112223334 6677777777666554444556666655555543
Q ss_pred hcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchh---HHHHHHHHHccCC-HHHHHH
Q 039792 609 KCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYIT---FVGVLSACSHAGL-IEDGLD 684 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g~-~~~a~~ 684 (819)
.. |.+....|.. ..++|+..|.+.-+ +.||..+ +.+|+....+.-. -.+..+
T Consensus 229 D~---------~~~s~~~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~ 284 (374)
T PF13281_consen 229 DL---------FLESNFTDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRK 284 (374)
T ss_pred HH---------HHHcCccchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHH
Confidence 21 1111111111 15566666666655 5565433 3333333322111 112222
Q ss_pred HH---HHHH-hcCCccCchHHHHHHHHhhcc--cchhhhHHHHHHHHHccCCC
Q 039792 685 HF---QSMA-GFGIEPGMEHYASVVSLLGRN--VWNVELGRYAAEMAISIDPM 731 (819)
Q Consensus 685 ~~---~~m~-~~g~~p~~~~y~~li~~l~r~--~w~~~~a~~~~~~~~~~~p~ 731 (819)
+- ..+. +.|.......|.-....++-. .-|.+.+.+++++++.+.|+
T Consensus 285 i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 285 IGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 22 2222 244444444444433333221 01788888888888888765
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.24 E-value=0.074 Score=41.67 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCC---C-chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIE--GLEP---N-YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p---~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+++.+...|...|++++|+..|++..+. .+.+ + ..++..+..++...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555666666666666555432 1121 1 23566666677777777777777766543
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.21 E-value=3.2 Score=43.17 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCC-C--ee----ehhhhHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQR-D--IV----VWNAMLLGYTQ---QLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~~-~--~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
.++-.|....+++...++.+.+... + .. .-....-++.+ .|+.++|++++..+....-.+++.||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577788888888888888763 1 11 11123445556 7899999999999776667788888887776
Q ss_pred HH
Q 039792 571 AA 572 (819)
Q Consensus 571 ~~ 572 (819)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=94.02 E-value=0.38 Score=43.00 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=61.8
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 682 (819)
+-..|++++|..+|.-.. .-|..-|..|..+|-..+++++|+..|..... +.+ |...+.....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchHHHHHHHhCCHHHH
Confidence 345678888888877544 34556677788888888888888888888776 444 345677777788888888888
Q ss_pred HHHHHHHHh
Q 039792 683 LDHFQSMAG 691 (819)
Q Consensus 683 ~~~~~~m~~ 691 (819)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888888776
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.00 E-value=0.092 Score=41.11 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC------C---CC-hHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT------W---KD-VACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~------~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
..+++.+...|...|++++|.+.|++.. . ++ ..+++.+...|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567888889999999999998887654 1 12 34678888889999999999999888764
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.93 Score=46.54 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...|.....+.++++|+|.-+++.-+.+|...|+++.|...++++.+
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 667889999999999999999999999999999999999999999875
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.88 E-value=9.5 Score=39.82 Aligned_cols=445 Identities=12% Similarity=0.055 Sum_probs=224.0
Q ss_pred CCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCe---eeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHH
Q 039792 190 DRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTA---VSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVL 266 (819)
Q Consensus 190 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 266 (819)
+-|..+|-.||.-|.-.|..++.++++++|..|-+ .+|..-|++-....+++....+|.+........| .|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHH
Confidence 45677899999999999999999999999977644 4799889888888899999999999887655544 344444
Q ss_pred HHhhccCChhh------HHHHHHHHHH-hCCCC-chhHHHHHHHHhH---hCC------ChHHHHHHHhcccCCCc----
Q 039792 267 SACSMLQFVGG------GKQIHAHVLR-RGMGM-DVSVINVLMDFYS---KCG------RVKMARRLFDEIEVKNI---- 325 (819)
Q Consensus 267 ~~~~~~~~~~~------a~~~~~~~~~-~g~~~-~~~~~~~li~~~~---~~g------~~~~A~~~~~~~~~~~~---- 325 (819)
.-..+....-. --+.++.++. .+++| ....|+..+...- ..| ++|..++.+.++..-..
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 43333332222 2244554444 24444 3344555544332 123 34455555555542111
Q ss_pred ------ccHHHHHHHHHcC---C----ChhHHHHHHHHHHH--CCCCC----CcchHHHHHHHhcCCcchhhHHHHHHHH
Q 039792 326 ------ISWTTLIGGYMQN---S----FDREAMKLFTEMTR--SGWKP----DDFACSSVLTSCGSVEALEQGRQVHAYS 386 (819)
Q Consensus 326 ------~~~~~li~~~~~~---g----~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 386 (819)
..|..=+.-.... | -+-.|...+++... .|++. +..|++-+-+ ..+. .-....+.=
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r----~s~S-~WlNwIkwE 271 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR----TSDS-NWLNWIKWE 271 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc----cccc-hhhhHhhHh
Confidence 1111111111110 1 12345555555532 24332 2223322111 0000 000111111
Q ss_pred HHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 039792 387 FKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLT 463 (819)
Q Consensus 387 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 463 (819)
.+.|+.....+... ...-+|++... -....|----.-+...++-+.|+.....-.. ..|+
T Consensus 272 ~en~l~L~~~~~~q------------Ri~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps--- 334 (660)
T COG5107 272 MENGLKLGGRPHEQ------------RIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS--- 334 (660)
T ss_pred hcCCcccCCCcHHH------------HHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---
Confidence 12222211111110 01111111111 0112232222333444555555554443211 1122
Q ss_pred HHHHHHHhhc-cCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHh---------cCChHHHHHHHHhcCCCCeeehhhh
Q 039792 464 FVSLLGLSSS-VFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK---------CFSNKDARLVFDEMNQRDIVVWNAM 533 (819)
Q Consensus 464 ~~~ll~~~~~-~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~l 533 (819)
++..+.-|.. .++-+.+...++.... .|..-|.+ .|+.+...+++-.-...-...|...
T Consensus 335 L~~~lse~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~ 403 (660)
T COG5107 335 LTMFLSEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVH 403 (660)
T ss_pred hheeHHHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHH
Confidence 2222222222 2222222222221111 01111100 1112211122111112334567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQ-QRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
+..-.+....+.|..+|-+..+.| +.++...++.++.-++ .|+...|..+|+.-...-.. +..--+-.+..+...++
T Consensus 404 ~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi~ind 481 (660)
T COG5107 404 LNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLFLIRIND 481 (660)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCc
Confidence 777777777788888888888777 5677777777776554 56777788888766554322 33333556677778888
Q ss_pred HHHHHHHHhcCC---CCC--hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 039792 613 LEDAYETFGSTT---WKD--VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSAC 673 (819)
Q Consensus 613 ~~~A~~~~~~~~---~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 673 (819)
-+.|..+|+... ..+ -..|..||.--..-|+...+..+=++|.+ +-|...+.....+-|
T Consensus 482 e~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 482 EENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 889999998655 223 34788888888888999999888888887 677665444444433
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.79 E-value=0.6 Score=40.34 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHcc
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHA 676 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 676 (819)
..++..++-++++.|+++....++++.-..|+. +-...+. --....+.|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 456667777777777777777766544322110 0000000 111234667778888888888888
Q ss_pred CCHHHHHHHHHHHHh-cCCccCchHHHHHHH
Q 039792 677 GLIEDGLDHFQSMAG-FGIEPGMEHYASVVS 706 (819)
Q Consensus 677 g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~ 706 (819)
|++..|.++++...+ +++.-+...|..|+.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 889999888888888 887766666666654
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.76 E-value=0.65 Score=44.46 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=26.0
Q ss_pred HHhcCCHHHHHHHHhcCC--CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 607 YAKCGSLEDAYETFGSTT--WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
+...|++++|.+.|+.+. -|+ ..+.-.++.++.+.|++++|...+++.++ ..|+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~ 74 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPN 74 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCC
Confidence 334455555555554443 111 12333455566666666666666666665 3454
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.63 E-value=1.5 Score=42.02 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=29.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHH
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a 682 (819)
+..-|.+.|.+..|..-++.+++ --|+. .....++.++.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 34556777777777777777776 34553 2355666677777776643
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=93.55 E-value=1.7 Score=45.96 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHH
Q 039792 643 EPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRY 720 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~ 720 (819)
...+|.++.++..+ +.|+ ......+..+....|+.+.|...|++... ....++...|..++..+.- +.+.|..
T Consensus 319 ~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G---~~~~a~~ 393 (458)
T PRK11906 319 AAQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNE---KIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC---CHHHHHH
Confidence 45567777777777 6664 45666666677777788888888888877 4444444555555554432 6788888
Q ss_pred HHHHHHccCCCCchhHHHHHH--HHHhCCCchHHHHHHH
Q 039792 721 AAEMAISIDPMDSGSYTLLSN--TFACNSMWADAKQVRK 757 (819)
Q Consensus 721 ~~~~~~~~~p~~~~~~~~l~~--~y~~~g~~~~a~~~~~ 757 (819)
..+++++++|.-..+-++--+ +|+.. ..++|.+++-
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 999999999976655554444 45554 4566666653
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.16 E-value=1.9 Score=37.72 Aligned_cols=107 Identities=13% Similarity=0.093 Sum_probs=66.1
Q ss_pred HHHhcCCHHHHHHHHhcCCCC------ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccC
Q 039792 606 MYAKCGSLEDAYETFGSTTWK------DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAG 677 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g 677 (819)
...+.|++++|.+.|+.+... ....--.|+.+|.+.|++++|+..+++.++ +.|+. +-|...+.+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHHH
Confidence 344567777777777766521 122444578888888999999999999988 77764 45777777766544
Q ss_pred CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc
Q 039792 678 LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS 733 (819)
Q Consensus 678 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~ 733 (819)
..+. .|..+. +..-|.. ....|...+++++..-|++.
T Consensus 97 ~~~~---~~~~~~--~~drD~~--------------~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEG---SLQSFF--RSDRDPT--------------PARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred Hhhh---HHhhhc--ccccCcH--------------HHHHHHHHHHHHHHHCcCCh
Confidence 3332 222222 1211111 44566667788888888653
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.13 E-value=8.7 Score=37.05 Aligned_cols=196 Identities=16% Similarity=0.093 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh-HhHHHHHH-H
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKL-GLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW--KDV-ACWNSMIC-T 637 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 637 (819)
..+......+...+.+..+...+...... ........+..+...+...+....+.+.+..... ++. ..+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444444555555555555555444431 1222344444455555555556666665554442 111 22222222 5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC----chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPN----YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW 713 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w 713 (819)
+...|+++.|...+++... ..|. ...+......+...++.+++...+..............+..+...+....
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG- 216 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-
Confidence 6666677777777666644 3331 12333333345566667777766666665211101222333333332221
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.+......+++..|.....+..++..+...|.++++...+.+..+
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356666666777777766556666666666666667777766665543
No 237
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.00 E-value=0.17 Score=32.50 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 735 SYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 735 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+|..|+++|...|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999854
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.95 E-value=0.65 Score=48.83 Aligned_cols=67 Identities=10% Similarity=-0.081 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 039792 559 RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDS--FITSALIDMYAKCGSLEDAYETFGSTTW 625 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 625 (819)
+.+...+..+-.++...|++++|...++..++.++.... ..|..+..+|.+.|+.++|.+.+++...
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446678889999999999999999999999987655221 3588899999999999999999888664
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.95 E-value=1.8 Score=36.64 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=62.1
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCC
Q 039792 606 MYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGL 678 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~ 678 (819)
+++..|+++.|++.|.+.. +.+...||.-..++.-.|+.++|+.-+++.++.. .|.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA-GDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888887654 5577788888888888888888888888887621 1111 235555556777888
Q ss_pred HHHHHHHHHHHHhcC
Q 039792 679 IEDGLDHFQSMAGFG 693 (819)
Q Consensus 679 ~~~a~~~~~~m~~~g 693 (819)
.|.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887776544
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.90 E-value=7.6 Score=39.31 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=95.9
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCchhHH
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLL-SQQRPN---EFTFAALITAASNLGSLKHGQQFHNHLIKLG-----LDFDSFIT 600 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~ 600 (819)
|-.+..++-+.-++.+++.+-+.-.. .|..|. .....++-.+....+.++.+.+.|+...+.- ......++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 33344444444444555444333221 222221 1223345556666677888888887776532 12245678
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-------CCCChH------hHHHHHHHHHhCCChHHHHHHHHHHHH----cCCCCCc
Q 039792 601 SALIDMYAKCGSLEDAYETFGST-------TWKDVA------CWNSMICTNAHHGEPMKALLLFREMII----EGLEPNY 663 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~ 663 (819)
.+|...|.+..+.++|.-+..+. .-.|.. +.-.|..++...|....|.+..++..+ .|-.|-.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 88999999988888876554432 223432 223466778888888888888877654 3333322
Q ss_pred -hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 664 -ITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 664 -~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
.....+...|...|+.|.|+.-+++..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 235566778889999999887777654
No 241
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=20 Score=40.20 Aligned_cols=304 Identities=11% Similarity=-0.001 Sum_probs=152.2
Q ss_pred HHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCC---CHHHHHHHHHhcCC--CCcchHHHHHHHHHhcC
Q 039792 366 VLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCD---SLTEARKVFDVMAD--RNVVSYNAMIEGYSKEE 440 (819)
Q Consensus 366 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g 440 (819)
+|+-+...+.+..|.++-..+...-..- ..++.....-+.+.. +-+-+..+-+++.. .+.++|..+..--.+.|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 3444555556666666555443211111 344555555554442 22333444444444 45567777777666778
Q ss_pred ChhHHHHHHHHHHhCCCC----CChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHH
Q 039792 441 KLSEALDLFHEMRVGFVP----PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDAR 516 (819)
Q Consensus 441 ~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 516 (819)
+.+-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-.+...-... . .+.-..+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s---~------l~~~l~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS---S------LFMTLRNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH---H------HHHHHHhchhhh
Confidence 887777776652221110 122234445555666666666666555544321000 0 000011122233
Q ss_pred HHHHhcCC-CCeeehhhhHHHHHhcCCHHHHHHHH--HHHHH-CCCCCCHHHHHHHHHHHhccCChHHHHH---------
Q 039792 517 LVFDEMNQ-RDIVVWNAMLLGYTQQLENEEAIKLY--LELLL-SQQRPNEFTFAALITAASNLGSLKHGQQ--------- 583 (819)
Q Consensus 517 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~--------- 583 (819)
.+|....+ .|.. .+-+.|-+..+. +++..| +.... .-+.+-.......-.+|++.....-..+
T Consensus 593 ~lY~~~~r~~~~~---~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl 668 (829)
T KOG2280|consen 593 SLYRQFMRHQDRA---TLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLL 668 (829)
T ss_pred HHHHHHHHhhchh---hhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 33332211 1110 011112222222 222211 11000 0012222223334445554443221111
Q ss_pred -HHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 584 -FHNHLI-KLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 584 -~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
+.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+.
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------ 742 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------ 742 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------
Confidence 111111 233333334455556667788999999999999999998888888889999998887666655442
Q ss_pred CchhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 662 NYITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 662 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
..+-|.-...+|.+.|+.+||.+++.+.
T Consensus 743 sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 743 SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 2556777888999999999999987654
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.60 E-value=1.4 Score=42.88 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCc-hHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGM-EHYASV 704 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~-~~y~~l 704 (819)
|+.-+. +.+.|++..|...|...++ --|+. ..+.-|..++...|++++|..+|..+.+ ++-.|.. +.+--+
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 554443 3455668888888888887 34542 3466777788888888888888888877 6655543 333333
Q ss_pred HHHhhcccchhhhHHHHHHHHHccCCCCch
Q 039792 705 VSLLGRNVWNVELGRYAAEMAISIDPMDSG 734 (819)
Q Consensus 705 i~~l~r~~w~~~~a~~~~~~~~~~~p~~~~ 734 (819)
...+++.. +.+.|...++++++-.|+.+.
T Consensus 222 g~~~~~l~-~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 222 GVSLGRLG-NTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHCCCCHH
Confidence 33333332 556666666666666665443
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=1.3 Score=44.01 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc----cchhh
Q 039792 641 HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN----VWNVE 716 (819)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~----~w~~~ 716 (819)
+|+..+|-..++++++. .+.|-..+...-.+|...|+.+.-...++++.. .-.|+...|..+-.+|.=. + -++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip-~wn~dlp~~sYv~GmyaFgL~E~g-~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP-KWNADLPCYSYVHGMYAFGLEECG-IYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc-ccCCCCcHHHHHHHHHHhhHHHhc-cch
Confidence 35555555566666551 222445555555566666666655555555542 1234554454444433311 1 455
Q ss_pred hHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 039792 717 LGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRK 757 (819)
Q Consensus 717 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 757 (819)
.|+..++++++++|.|.-+...++.++-.+|+..|+.+...
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 66666666666666666666666666666666666665543
No 244
>PRK15331 chaperone protein SicA; Provisional
Probab=92.40 E-value=1.3 Score=39.67 Aligned_cols=48 Identities=10% Similarity=-0.066 Sum_probs=36.5
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...+..+..++++||.++...+.-|...|+.++|..-++...+
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 444555555566677788888888899999999999999888876654
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.31 E-value=0.71 Score=39.88 Aligned_cols=50 Identities=8% Similarity=0.123 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-hCCCCchhHHHHHHHH
Q 039792 557 QQRPNEFTFAALITAASNLGSLKHGQQFHNHLIK-LGLDFDSFITSALIDM 606 (819)
Q Consensus 557 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~ 606 (819)
...|+..++.+++.+++..+++..|.++.+...+ .+++.+..+|..|++-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4567777777777777777777777777776654 4555556666666553
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.12 E-value=4.3 Score=44.47 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=98.9
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQ-QRPNE-----FTFAALITAASN----LGSLKHGQQFHNHLIKLGLDFDSFITS 601 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 601 (819)
.++....-.|+-+.+++.+.+-.+.+ +.-.. .+|..++..+.. ....+.+.+++..+.+.-+ +...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP--~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP--NSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC--CcHHHH
Confidence 34444555566666766666544321 21111 224444443332 4577888999998887643 444443
Q ss_pred -HHHHHHHhcCCHHHHHHHHhcCCC-------CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHH-
Q 039792 602 -ALIDMYAKCGSLEDAYETFGSTTW-------KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSA- 672 (819)
Q Consensus 602 -~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a- 672 (819)
--...+...|++++|.+.|++... -....+--+...+...+++++|.+.|.++.+.. .-+..+|..+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 345677889999999999996552 122344556677888899999999999999832 2234455555443
Q ss_pred HHccCCH-------HHHHHHHHHHHh
Q 039792 673 CSHAGLI-------EDGLDHFQSMAG 691 (819)
Q Consensus 673 ~~~~g~~-------~~a~~~~~~m~~ 691 (819)
+...|+. ++|.++|.+...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4457777 888888887754
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.09 E-value=3.8 Score=36.33 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHH
Q 039792 567 ALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMK 646 (819)
Q Consensus 567 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 646 (819)
.++..+...+.......+++.+.+.+. .+....+.++..|++.+ .++..+.++. ..+.......+..|.+++.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 344444455556666666666665553 45566666666666543 2333344331 1122222334444444444444
Q ss_pred HHHHHHH
Q 039792 647 ALLLFRE 653 (819)
Q Consensus 647 A~~~~~~ 653 (819)
+.-++.+
T Consensus 88 ~~~l~~k 94 (140)
T smart00299 88 AVELYKK 94 (140)
T ss_pred HHHHHHh
Confidence 4444443
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.04 E-value=0.26 Score=33.33 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLS 740 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 740 (819)
+.+.|+..++++++.+|+|+..+..|+
T Consensus 16 ~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 16 QPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 334444444444455555555554443
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.90 E-value=0.95 Score=43.78 Aligned_cols=110 Identities=12% Similarity=0.192 Sum_probs=78.3
Q ss_pred HHHHHHhcCC--CCCeeeHHHHHHHHHhc-----CCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC---------
Q 039792 211 DAKFVFDGLM--VKTAVSWTTIITGYVKS-----GRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQF--------- 274 (819)
Q Consensus 211 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--------- 274 (819)
..+..|...+ ++|..+|-+++..+... +.++-....++.|++-|+.-|..+|+.||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 66788888888877653 5566677778899999999999999999998765432
Q ss_pred -------hhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCCh-HHHHHHHhcc
Q 039792 275 -------VGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRV-KMARRLFDEI 320 (819)
Q Consensus 275 -------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 320 (819)
-+-+..+++.|...|+-||..+-..|++++.+.+-. .+..++.-.|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 123567888888888888888888888887776542 3333443334
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.90 E-value=9.3 Score=37.11 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=70.4
Q ss_pred HhcCCHHHHHHHHhcCCCC---C---hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHcc---
Q 039792 608 AKCGSLEDAYETFGSTTWK---D---VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHA--- 676 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~--- 676 (819)
.+.|++++|.+.|+.+... + ..+--.++.++-+.+++++|+..+++... ..|+. .-|...+.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCChhHHHHHHHHHHhccC
Confidence 3556777777777666521 1 12333456667778888888888888877 55543 3455555544422
Q ss_pred ----CCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchH
Q 039792 677 ----GLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWAD 751 (819)
Q Consensus 677 ----g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 751 (819)
.+...+...+..+.+ -.--|+. +=+..+..+...+.-.=++.-...++.|.+.|.|..
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS-----------------~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNS-----------------RYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCC-----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 222333333333332 1111211 111111111111111112233456778888888888
Q ss_pred HHHHHHHHHhC
Q 039792 752 AKQVRKKMDLD 762 (819)
Q Consensus 752 a~~~~~~m~~~ 762 (819)
|..-+++|.+.
T Consensus 186 A~nR~~~v~e~ 196 (254)
T COG4105 186 AINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhc
Confidence 88888888764
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.89 E-value=17 Score=38.29 Aligned_cols=32 Identities=9% Similarity=-0.131 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
+.+.....++.+.++.|.....|..++..+..
T Consensus 273 ~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 273 SSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 45667778888999999888888888877654
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=16 Score=36.36 Aligned_cols=117 Identities=11% Similarity=0.109 Sum_probs=81.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChHhHH---HHHHHHHhCCChHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWK-DVACWN---SMICTNAHHGEPMK 646 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~---~li~~~~~~g~~~~ 646 (819)
.....|++..+..+++.......+ +....-.++.+|...|+.+.|..++..++.. ...-|. .-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 456788999999999999887655 4666777999999999999999999998832 222222 22334444444444
Q ss_pred HHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 647 ALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...+-.+.-. .|+. ..-..+...+...|+.++|.+.+-.+.+
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444443 6754 4556677788999999999988776665
No 253
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=2.1 Score=44.14 Aligned_cols=95 Identities=11% Similarity=0.118 Sum_probs=54.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
+..|..+|.+.+.+.+|++..++.+..+-..-.-.|..=--.+.-. +++.|+..++++++++|.|-.+-..|+.+--+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~--e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALG--EYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4444555555555555555555555422111111111110111111 67777777888888888888888888877776
Q ss_pred CCCchHH-HHHHHHHHhC
Q 039792 746 NSMWADA-KQVRKKMDLD 762 (819)
Q Consensus 746 ~g~~~~a-~~~~~~m~~~ 762 (819)
..++++. .+++..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6655554 7788888653
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.09 E-value=10 Score=33.49 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=7.6
Q ss_pred chhhHHHHHHHHHhc
Q 039792 495 DVFAGSALIDAYSKC 509 (819)
Q Consensus 495 ~~~~~~~li~~~~~~ 509 (819)
+...++.++..|++.
T Consensus 40 ~~~~~~~li~ly~~~ 54 (140)
T smart00299 40 NPALQTKLIELYAKY 54 (140)
T ss_pred chhHHHHHHHHHHHH
Confidence 444555555555543
No 255
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.92 E-value=0.094 Score=47.00 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=61.5
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhH
Q 039792 264 SVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDRE 343 (819)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 343 (819)
.++..+.+.+........++.+.+.+...+....+.|+..|++.++.++..++++.... .....++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35566667777777888888888777677788899999999999888888888874332 444566777777777777
Q ss_pred HHHHHHHHH
Q 039792 344 AMKLFTEMT 352 (819)
Q Consensus 344 A~~~~~~m~ 352 (819)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776643
No 256
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.30 E-value=32 Score=37.73 Aligned_cols=179 Identities=13% Similarity=0.095 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT 637 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 637 (819)
+..+|..-+.--...|+.+...-+++...-.- ..-...|--.+.-....|+.+-|..++.+.. .|+...-..+-.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 44567777777777777777777776654311 1122344444455555588888877776544 3333322333333
Q ss_pred HH-hCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHH---HHHHHHHhcCCccCchHHHHHHHHh---h
Q 039792 638 NA-HHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGL---DHFQSMAGFGIEPGMEHYASVVSLL---G 709 (819)
Q Consensus 638 ~~-~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~---~~~~~m~~~g~~p~~~~y~~li~~l---~ 709 (819)
+. ..|++..|..+++...++ + |+.+ .-..-+....+.|+.+.+. +++... .++..+++.+-..+ .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~-----~~~~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSI-----YEGKENNGILEKLYVKFA 447 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh-----cccccCcchhHHHHHHHH
Confidence 33 458999999999999874 4 7653 2333344566778888777 333332 23333333222222 2
Q ss_pred cccc----hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCC
Q 039792 710 RNVW----NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNS 747 (819)
Q Consensus 710 r~~w----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 747 (819)
|-.| +.+.|..+..++.+..|++-.-|..+.++....+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 2222 8899999999999999999999999999887776
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.28 E-value=4.5 Score=40.37 Aligned_cols=112 Identities=8% Similarity=0.049 Sum_probs=51.4
Q ss_pred CChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHhccCChHHHH
Q 039792 510 FSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAAL----ITAASNLGSLKHGQ 582 (819)
Q Consensus 510 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~a~ 582 (819)
|+..+|...++++.+ .|..+++--=.++...|+.+.-...+++.... ..||...|..+ .-++...|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444444444444443 24444544445555555555555555554432 22333222211 12223445555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 039792 583 QFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGST 623 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 623 (819)
+.-++..+.+.. |.....++...+.-.|++.++.++..+-
T Consensus 196 k~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555544422 4444444555555555555555555443
No 258
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.20 E-value=18 Score=34.73 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=46.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchh
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNV 715 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~ 715 (819)
+...++.+++...+.+... ..|+ ...+..+...+...+.++++...+.......-. ....+..+...+. ..++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 252 (291)
T COG0457 177 LEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLL-ELGRY 252 (291)
T ss_pred HHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHH-HcCCH
Confidence 4455666666666666655 3333 345555555666666666666666666541111 1122222222222 11245
Q ss_pred hhHHHHHHHHHccCCC
Q 039792 716 ELGRYAAEMAISIDPM 731 (819)
Q Consensus 716 ~~a~~~~~~~~~~~p~ 731 (819)
+.+....++.++..|.
T Consensus 253 ~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 253 EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 6666666666666665
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.07 E-value=7.2 Score=33.38 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=38.6
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
.-++.+...|+-+.-.++++++... -+|++.....+..+|.+.|+..++.+++..+.+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3456667777777777777776642 3667777777777788888888877777777777754
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.03 E-value=1 Score=30.45 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
.|..+...|...|++++|.++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 567777888888888888888888887 677654
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.31 E-value=33 Score=36.81 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC-Cc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-ccCchHHHHHHHHh
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEP-NY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGI-EPGMEHYASVVSLL 708 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~~~~y~~li~~l 708 (819)
..+..+..+.|+.++|++.|++|.+.. .+ |. .....|+.++...+.+.++..++.+-.+... +.-..+|+..+- .
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL-k 340 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL-K 340 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH-H
Confidence 456677778888888888888887632 22 12 3567788888888888888888877543221 222345554331 1
Q ss_pred hcccc---------------hhhhHHHHHHHHHccCCCCch
Q 039792 709 GRNVW---------------NVELGRYAAEMAISIDPMDSG 734 (819)
Q Consensus 709 ~r~~w---------------~~~~a~~~~~~~~~~~p~~~~ 734 (819)
.|++- ....|.++.+++++.+|.-+.
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 12110 112345678888888876443
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.06 E-value=2.3 Score=42.17 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCchhHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII-----EGLEPNYITFVG 668 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 668 (819)
..++..++..+..+|+.+.+.+.+++.. +-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3466677888888888888888887765 44667888888888888888888888887764 466676655555
Q ss_pred HHHH
Q 039792 669 VLSA 672 (819)
Q Consensus 669 ll~a 672 (819)
+..+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.94 E-value=17 Score=40.00 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=18.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIK 590 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 590 (819)
+..+++...-.|+-+.+.+.+....+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 44566666677888888887776655
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.93 E-value=0.92 Score=28.40 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3577777788888888888888888877 6664
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=88.84 E-value=5 Score=34.13 Aligned_cols=90 Identities=23% Similarity=0.230 Sum_probs=63.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchH-----HHHHHHH
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEH-----YASVVSL 707 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~-----y~~li~~ 707 (819)
.-+.+..|+.+.|++.|.+.+. +-|. ...|+.-..++.-.|+.++|+.-+++..+ .|-+-.... -+.+..+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3456788999999999999998 7775 57899999999999999999999999998 665422111 1233444
Q ss_pred hhcccchhhhHHHHHHHHHccCC
Q 039792 708 LGRNVWNVELGRYAAEMAISIDP 730 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p 730 (819)
.| +.+.|+.-++.+-++..
T Consensus 128 ~g----~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LG----NDDAARADFEAAAQLGS 146 (175)
T ss_pred hC----chHHHHHhHHHHHHhCC
Confidence 44 44555554544444443
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.79 E-value=4.8 Score=40.85 Aligned_cols=132 Identities=12% Similarity=0.247 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCH
Q 039792 543 NEEAIKLYLELLLSQQRPNEFTFAALITAASN--LG----SLKHGQQFHNHLIKLGLD---FDSFITSALIDMYAKCGSL 613 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 613 (819)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+++.|.+..+- ++-..+.+|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455677777777777776666553333222 11 234566666666664432 122222222211 12221
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHH-HHHHHHHccCC--HHHHHHHHHHH
Q 039792 614 EDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFV-GVLSACSHAGL--IEDGLDHFQSM 689 (819)
Q Consensus 614 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-~ll~a~~~~g~--~~~a~~~~~~m 689 (819)
++- .+.+..+|+.+.+.|+..+. ..+. .++..+..... +.++.++++.+
T Consensus 156 e~l---------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EEL---------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HHH---------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 111 24455666666666666643 2233 33332222211 34566667777
Q ss_pred HhcCCccCchHHHH
Q 039792 690 AGFGIEPGMEHYAS 703 (819)
Q Consensus 690 ~~~g~~p~~~~y~~ 703 (819)
.+.|+++...||..
T Consensus 209 ~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 209 KKNGVKIKYMHYPT 222 (297)
T ss_pred HHcCCccccccccH
Confidence 66777766666653
No 267
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.51 E-value=0.73 Score=28.78 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 733 SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 733 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+..|..++.+|...|++++|.+.+++..+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35788999999999999999999998765
No 268
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.87 E-value=2.3 Score=42.38 Aligned_cols=88 Identities=14% Similarity=0.150 Sum_probs=48.6
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhccc---
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNV--- 712 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~--- 712 (819)
-|.++|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..-....+... ...+.+|.|.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHHH
Confidence 45555666666666665555 555 55666666666666655555544444333210 11223333320
Q ss_pred ---chhhhHHHHHHHHHccCCCCch
Q 039792 713 ---WNVELGRYAAEMAISIDPMDSG 734 (819)
Q Consensus 713 ---w~~~~a~~~~~~~~~~~p~~~~ 734 (819)
-+.+.|..-+|.+++++|++-.
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHH
Confidence 1566777788889999998544
No 269
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.82 E-value=0.69 Score=26.99 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHH
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRK 757 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~ 757 (819)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999999875
No 270
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.78 E-value=55 Score=37.16 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=48.4
Q ss_pred hHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcC
Q 039792 295 SVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGS 372 (819)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 372 (819)
.++..+|+.+.-.|++++|-...-.|...+..-|.-.+..+...++......++ ....-+.+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 456667788888888999988888888888888887777777777665433322 111112234456556655544
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.64 E-value=9.8 Score=41.16 Aligned_cols=103 Identities=15% Similarity=0.049 Sum_probs=65.2
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 039792 502 LIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHG 581 (819)
Q Consensus 502 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 581 (819)
-.+...++|+++.|.++.++.. +...|..|.....+.|+++-|.+.|++..+ |..|+-.+.-.|+.+.-
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3455667888888887776665 455888888888888888888888876543 45555566667777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 582 QQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
.++.+.....|- +|....++...|+.++..+++.
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 777766665542 2333444445566665555443
No 272
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.57 E-value=4.6 Score=43.64 Aligned_cols=131 Identities=13% Similarity=0.104 Sum_probs=75.4
Q ss_pred HHHhcCCchhHHHHHH--HHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCCh
Q 039792 233 GYVKSGRSDLSLNLFN--QMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRV 310 (819)
Q Consensus 233 ~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 310 (819)
...-+|+++++.++.+ ++.. .+ +..-...++.-+-+.|..+.|.++-. |+ ..-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCH
Confidence 3455677777766664 1111 11 13346667777777777777776533 22 2234566788999
Q ss_pred HHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHc
Q 039792 311 KMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKA 389 (819)
Q Consensus 311 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 389 (819)
+.|.++.++.. +...|..|-....++|+++-|.+.|.+..+ |..++--+...|+.+...++-+.....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99998887766 445899999999999999999999888643 333444444445555544444444433
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.42 E-value=4.6 Score=40.14 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=63.5
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCccCchHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAG-----FGIEPGMEHYA 702 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~y~ 702 (819)
.+++.++..+...|+++.+.+.++++.. ..| |...|..++.+|.+.|+...|+..++.+.+ .|+.|..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3567788999999999999999999998 778 678999999999999999999999998765 57888755444
Q ss_pred HHHH
Q 039792 703 SVVS 706 (819)
Q Consensus 703 ~li~ 706 (819)
....
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 3333
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.35 E-value=22 Score=32.02 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=24.0
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
...++.+.++.++..+.-..+. ....-..-...+.+.|++.+|..+|+++.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445555555555555544332 11222222333445555555555555554
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.32 E-value=18 Score=31.09 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=74.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcCCHH
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFI---TSALIDMYAKCGSLE 614 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~ 614 (819)
.-.|..++..++..+.... .+..-++-+|--....-+-+. +++-+.+-|--.|... .-.++..|++.|..
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~y---vv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDY---VVETLDSIGKIFDISKCGNLKRVIECYAKRNKL- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHH---HHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhH---HHHHHHHHhhhcCchhhcchHHHHHHHHHhcch-
Confidence 3456666777777766643 233344444433333333333 2333333332223221 12334444444332
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 039792 615 DAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 615 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 694 (819)
..-.+.-+......|+-++-.+++.++.+ +-+|+.....-+.+||.+.|+..++.+++.+..+.|+
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22344567778888998888888888875 3477888888999999999999999999999988886
Q ss_pred c
Q 039792 695 E 695 (819)
Q Consensus 695 ~ 695 (819)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.04 E-value=1.4 Score=28.11 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 277
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.99 E-value=0.93 Score=29.92 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788999999999999999999998865
No 278
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.83 E-value=36 Score=38.88 Aligned_cols=92 Identities=18% Similarity=0.137 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChH--hHHHHHHHHHhCCC------------hHHHHHHHHHHHHcC-----CCCC-
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTWKDVA--CWNSMICTNAHHGE------------PMKALLLFREMIIEG-----LEPN- 662 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~------------~~~A~~~~~~m~~~g-----~~p~- 662 (819)
...-+...|++++|..+|+-....|.+ ..|.+++....... ...|..+.+.....+ +.+.
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 344566788888888888877755433 34544443333222 233444444332211 2232
Q ss_pred chhHHHHHH-----HHHccCCHHHHHHHHHHHHhcCCccC
Q 039792 663 YITFVGVLS-----ACSHAGLIEDGLDHFQSMAGFGIEPG 697 (819)
Q Consensus 663 ~~t~~~ll~-----a~~~~g~~~~a~~~~~~m~~~g~~p~ 697 (819)
..|+..|+. ...+.|++++|++.++++ ++-|.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L---~liP~ 536 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKL---DLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT---T-S-S
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC
Confidence 356666665 356789999998777665 57773
No 279
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.55 E-value=38 Score=38.76 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=38.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHh---
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGL-DFDSFITSALIDMYAK--- 609 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~--- 609 (819)
...+.-.|+++.|++.+-+ ..+...+.+-+...+.-+.-..-.+... ..+..... .|....+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455667888888887766 2334556666655555443222111111 22221111 1122456677777775
Q ss_pred cCCHHHHHHHHhcCC
Q 039792 610 CGSLEDAYETFGSTT 624 (819)
Q Consensus 610 ~g~~~~A~~~~~~~~ 624 (819)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 456777777776554
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.48 E-value=34 Score=33.39 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+..-|.++|.+..|..-+++|++. -|+. ..+-.+..+|.+.|..++|...-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445688899999999999999984 4442 3466667788889988888877665554
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.43 E-value=82 Score=37.76 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=33.9
Q ss_pred CChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 039792 308 GRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSC 370 (819)
Q Consensus 308 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 370 (819)
++++.|+.-+.++. ...|+-.+..--++|.+.+|+.++ +|+...+..+..+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~y 945 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAY 945 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHH
Confidence 56777776666655 345666666666788888888775 56666665555443
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.32 E-value=22 Score=32.37 Aligned_cols=136 Identities=9% Similarity=0.026 Sum_probs=76.8
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCC
Q 039792 244 LNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVK 323 (819)
Q Consensus 244 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 323 (819)
+++++.+.+.+++|+...+..+++.+.+.|.+..-. .++..++-+|.......+-.+.. ....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 445556667778888888888888888887754333 33444544444433333322221 222233333333322
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHc
Q 039792 324 NIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKA 389 (819)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 389 (819)
=-..+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..++....+.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223466677788888888888888877532 22333345666666666666555565555543
No 283
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.04 E-value=5.5 Score=36.73 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=52.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCchh------HHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhc
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYIT------FVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR 710 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r 710 (819)
-+...|++++|..-|.+.++ +-|...+ |..-..++.+.+.++.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~----------------------------- 152 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWES----------------------------- 152 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHH-----------------------------
Confidence 45567888888888888877 4554322 2222233444444444
Q ss_pred ccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 711 NVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 711 ~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...+.+++++.|..-.+...-+-+|.+...+++|.+=++++.+
T Consensus 153 -------aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 153 -------AIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred -------HHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44445566666666666666666677777777777777776665
No 284
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.89 E-value=31 Score=32.49 Aligned_cols=170 Identities=13% Similarity=0.035 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChH-hHHHHHH--HHHhCCChHHHHHHHHHH
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVA-CWNSMIC--TNAHHGEPMKALLLFREM 654 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m 654 (819)
...|+.=|.+.....++ -+.++|.|.--+...|+++.|.+.|+...+-|+. -|..+=. ++--.|+++-|.+-|.+.
T Consensus 81 ~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 33444444444443333 3567777777778888888888888877754432 1222222 233457888888766666
Q ss_pred HHcCCCCCch---hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH--HHhhcccchhhhHHHHHHHHHccC
Q 039792 655 IIEGLEPNYI---TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV--SLLGRNVWNVELGRYAAEMAISID 729 (819)
Q Consensus 655 ~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li--~~l~r~~w~~~~a~~~~~~~~~~~ 729 (819)
-+ -.|+.. .|..+. ...-+..+|..-+.+-. . ..+.+-|+..+ -.+|+- .. +.+.+++.+-.
T Consensus 160 YQ--~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~-~--~~d~e~WG~~iV~~yLgki--S~---e~l~~~~~a~a 226 (297)
T COG4785 160 YQ--DDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRA-E--KSDKEQWGWNIVEFYLGKI--SE---ETLMERLKADA 226 (297)
T ss_pred Hh--cCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHH-H--hccHhhhhHHHHHHHHhhc--cH---HHHHHHHHhhc
Confidence 55 344432 222222 22234455543332211 1 12223333222 222321 11 11223333322
Q ss_pred CCC-------chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 730 PMD-------SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 730 p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.++ .++|.-|+.-|...|+.++|..+++....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 222 35788899999999999999999997654
No 285
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.84 E-value=1.3 Score=27.71 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
..|..++.+|...|++++|...+++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5789999999999999999999998865
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.60 E-value=11 Score=33.99 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
..|.-+-.+.|++.+|.+.|+++......|
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 345445556666666666666665533334
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.47 E-value=1.9 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 456667777777777777777777776 5554
No 288
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.99 E-value=18 Score=36.70 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCC----hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 039792 543 NEEAIKLYLELLLSQQ---RPNEFTFAALITAASNLGS----LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED 615 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 615 (819)
..+|.++|+.|++... .++..++..++.. ...+ .+..+.+++.+.+.|+..+-... .|-..+.-++..
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ-~LS~iLaL~~~~-- 193 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQ-FLSHILALSEGD-- 193 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHH-HHHHHHHhcccc--
Confidence 4678999999998643 4667778777765 3333 35566777777777776432211 111111111100
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 039792 616 AYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSA 672 (819)
Q Consensus 616 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 672 (819)
.... ..++.++++.+.+.|+++....|..+.-.
T Consensus 194 -----------------------~~~~-v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 194 -----------------------DQEK-VARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred -----------------------chHH-HHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 0111 45788899999999999887766655543
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.67 E-value=31 Score=31.41 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHH
Q 039792 384 AYSFKANIESDNFVKNSLVDMYAKCDSLTEARK 416 (819)
Q Consensus 384 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (819)
.-+.+.++.++...+..+++.+.+.|+...-..
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 333445555555555555555555555444333
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.58 E-value=1.3 Score=27.89 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=17.8
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 586 NHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
++.++..+. +...|+.|...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444443 5566666666666666666654
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.74 E-value=2.1 Score=26.62 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998765
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.60 E-value=8.1 Score=38.33 Aligned_cols=96 Identities=18% Similarity=0.247 Sum_probs=57.9
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CC--------ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 592 GLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WK--------DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 592 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
|......+...++..-....+++++...+-+.. .| ...+|-.++ -.=+.++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 333344445555555555666666666665444 22 122332222 22356677777777777777777
Q ss_pred chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 663 YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 663 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..++..|+..+.+.|++.+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777777777777666654
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.55 E-value=38 Score=38.22 Aligned_cols=131 Identities=17% Similarity=0.084 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCccCchHHHHH
Q 039792 631 WNSMICTNAHHG-----EPMKALLLFREMIIEGLEPNYITFVGVLSACSH-AGLIEDGLDHFQSMAGFGIEPGMEHYASV 704 (819)
Q Consensus 631 ~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~g~~p~~~~y~~l 704 (819)
..-+...|.+.. +.+.|+.++.+.-+.| .|+...+...+.-... ..+...|.++|......|..+.....+-+
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~ 369 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC 369 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344444444432 4566777777776655 3444433333332222 24567777777777776665543332222
Q ss_pred HHHhhcc-cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHHhCCCc
Q 039792 705 VSLLGRN-VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN-SMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 705 i~~l~r~-~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~ 765 (819)
-..|-. .-+.+.|...++++.+.. ++.+...++..|.-. ++++.+.-.+..+.+.|.+
T Consensus 370 -y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 370 -YELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred -HHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 222211 017778888888888877 345555555555433 8888888877777776653
No 294
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.16 E-value=1.4 Score=27.21 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 735 SYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 735 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
++..++.+|...|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678999999999999999999998753
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.57 E-value=21 Score=32.31 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=22.1
Q ss_pred hCCChHHHHHHHhcccCCCcccHHHHHH-----HHHcCCChhHHHHHHHHHHH
Q 039792 306 KCGRVKMARRLFDEIEVKNIISWTTLIG-----GYMQNSFDREAMKLFTEMTR 353 (819)
Q Consensus 306 ~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~ 353 (819)
+.++.++|..-|..+.+.+--.|-.|.. ...+.|+...|...|.+.-.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 3444455555555544444444443322 23344555555555555443
No 296
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.40 E-value=12 Score=36.78 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=12.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+.-|..+..+.|+.++|..+|++..+
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33344444445555555555555444
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.23 E-value=19 Score=33.46 Aligned_cols=93 Identities=19% Similarity=0.181 Sum_probs=51.0
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCc----hhHH
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEF--TFAALITAASNLGSLKHGQQFHNHLIKL---GLDFD----SFIT 600 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~ 600 (819)
+..+..-|.+.|+.++|++.|.++.+....|... .+..+|..+...+++..+.....++... |-.++ ..+|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3445566666677777777777766654444332 3456666677777777777766655432 11111 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
..|. +...+++.+|-+.|-...
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHccC
Confidence 2222 223567777766665544
No 298
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.67 E-value=9.4 Score=27.00 Aligned_cols=51 Identities=10% Similarity=-0.032 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 039792 735 SYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGY 811 (819)
Q Consensus 735 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~~ 811 (819)
..+.++-.+++.|+|++|.+..+.+.+ . .|...+..+-.+.+..+|.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~----~----------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE----I----------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH----H----------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh----h----------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 466788999999999999999998875 2 34444444445566678887774
No 299
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=81.44 E-value=29 Score=35.35 Aligned_cols=216 Identities=16% Similarity=0.088 Sum_probs=118.8
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHhcC
Q 039792 539 QQLENEEAIKLYLELLLS--QQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL--GLDFD---SFITSALIDMYAKCG 611 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~g 611 (819)
+..+.++|+..|.+-..+ ...-...+|..+..+.+..|.++++..+--.-++. ..+.. -..|--+...+.+--
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666554432 11122345666677777777777665533222111 11111 122333444454544
Q ss_pred CHHHHHHHHhcCC-----CC-Ch--HhHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--chhHHHHHHHHHccCC
Q 039792 612 SLEDAYETFGSTT-----WK-DV--ACWNSMICTNAHHGEPMKALLLFREMIIEGL---EPN--YITFVGVLSACSHAGL 678 (819)
Q Consensus 612 ~~~~A~~~~~~~~-----~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~ 678 (819)
++.+++.+-+.-. .+ .. ...-+|..++.-.+.++++++.|+...+--- .|. -..+..|.+.|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 5555554443211 11 11 1223466677777889999999998875211 221 2468899999999999
Q ss_pred HHHHHHHHHHHHh----cCCccCchHHHHHH--------HHhhcccchhhhHHHHHHHHHcc--CCCCchhH----HHHH
Q 039792 679 IEDGLDHFQSMAG----FGIEPGMEHYASVV--------SLLGRNVWNVELGRYAAEMAISI--DPMDSGSY----TLLS 740 (819)
Q Consensus 679 ~~~a~~~~~~m~~----~g~~p~~~~y~~li--------~~l~r~~w~~~~a~~~~~~~~~~--~p~~~~~~----~~l~ 740 (819)
+++|.-+..+..+ +++.--...|.+|+ .+.| .+..|....+++.++ .-.|...| -.++
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G----~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLG----RLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9999877776654 44433333344332 3334 344455555555443 23344444 4688
Q ss_pred HHHHhCCCchHHHHHHHH
Q 039792 741 NTFACNSMWADAKQVRKK 758 (819)
Q Consensus 741 ~~y~~~g~~~~a~~~~~~ 758 (819)
+||...|+.|.|-.-++.
T Consensus 254 DIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccHhHHHHHHHH
Confidence 999999998877665543
No 300
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.98 E-value=17 Score=38.73 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHH
Q 039792 644 PMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAA 722 (819)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~ 722 (819)
..+...+|++...+ +.-|...|...+.-|-+.+.+.+...+|..|.. ++..|+.-.|++.-..=-+. |++.++.++
T Consensus 87 ~~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~--ni~saRalf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL--NIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc--chHHHHHHH
Q ss_pred HHHHccCCCCchhHHHHHHH
Q 039792 723 EMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 723 ~~~~~~~p~~~~~~~~l~~~ 742 (819)
-+++...|+++..|.-.-.+
T Consensus 164 lrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 164 LRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HHHhhcCCCChHHHHHHHHH
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=80.94 E-value=66 Score=32.49 Aligned_cols=100 Identities=9% Similarity=0.001 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhccCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CC--ChHhHHHHHH
Q 039792 563 FTFAALITAASNLGSLK---HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WK--DVACWNSMIC 636 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~li~ 636 (819)
.++..++.++...+..+ +|..+++.+...... .+.++-.-++.+.+.++.+.+.+++.+|. .. ....|...+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 34555566666555443 344444455433322 34444444555555666777777666665 11 2234444444
Q ss_pred HHH--hCCChHHHHHHHHHHHHcCCCCCc
Q 039792 637 TNA--HHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 637 ~~~--~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
.+. .......|...++.++...+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 431 112344566666666655555543
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.43 E-value=16 Score=33.82 Aligned_cols=16 Identities=25% Similarity=0.096 Sum_probs=10.5
Q ss_pred hCCChHHHHHHHhccc
Q 039792 306 KCGRVKMARRLFDEIE 321 (819)
Q Consensus 306 ~~g~~~~A~~~~~~~~ 321 (819)
..|++..|-+.|-+..
T Consensus 125 ~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 125 AQRDFKEAAELFLDSL 140 (177)
T ss_pred HhchHHHHHHHHHccC
Confidence 3567777777776654
No 303
>PRK09687 putative lyase; Provisional
Probab=79.93 E-value=72 Score=32.25 Aligned_cols=73 Identities=8% Similarity=0.009 Sum_probs=36.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAA 572 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 572 (819)
+..+-...+.++++.++.+-...+.+.+..++ .....+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 44455555566666665433333333333333 223455556666664 566666666643 34555555555544
No 304
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.70 E-value=2.9 Score=26.00 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
+|..+...|.+.|++++|.+.|++..+ +.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCC
Confidence 456666777777777777777777766 444
No 305
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.56 E-value=5.9 Score=31.84 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=37.2
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 719 RYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 719 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
...+++.++.+|+|...-..++..|...|++++|.+.+-.+...
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999998877653
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.33 E-value=63 Score=31.25 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC--------CCCh-HhHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCC-CchhHHHHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT--------WKDV-ACWNSMICTNAHHGEPMKALLLFREMIIEG--LEP-NYITFVGVL 670 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p-~~~t~~~ll 670 (819)
....|.+..++++|-..|.+-. -++. ..|-+.|-.|....++..|...++.--+-+ ..| +..+...||
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 3444555556666655554322 0111 124445555666677888888877754321 223 235677777
Q ss_pred HHHHccCCHHHHHHHH
Q 039792 671 SACSHAGLIEDGLDHF 686 (819)
Q Consensus 671 ~a~~~~g~~~~a~~~~ 686 (819)
.+|- .|+.++...++
T Consensus 236 ~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHhc-cCCHHHHHHHH
Confidence 7765 56777665554
No 307
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.32 E-value=1.3e+02 Score=34.96 Aligned_cols=192 Identities=12% Similarity=0.053 Sum_probs=100.4
Q ss_pred hccCChHHHHHHHHHHHHhCCCCch-------hHHHHHHH-HHHhcCCHHHHHHHHhcCC--------CCChHhHHHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDS-------FITSALID-MYAKCGSLEDAYETFGSTT--------WKDVACWNSMIC 636 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~ 636 (819)
....++.+|..+..++...-..|+. ..+++|-. .....|++++|.++-+... ...++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4456677777776666543222211 12233221 2234567777766655332 335566677777
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCchh---HHHHHH--HHHccC--CHHHHHHHHHHHHh-cCCccCchHHHHHHHHh
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYIT---FVGVLS--ACSHAG--LIEDGLDHFQSMAG-FGIEPGMEHYASVVSLL 708 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~--a~~~~g--~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l 708 (819)
+..-.|++++|..+.++..+..-.-+... |..+.. .+...| .+.+....|..... +.......-|...+.+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77788888888887776655321223222 222222 355667 33444444554444 22111111122111111
Q ss_pred hcccc-hhhhHHHHHHHHHccC----CCC--c-hhHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 039792 709 GRNVW-NVELGRYAAEMAISID----PMD--S-GSYTLLSNTFACNSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 709 ~r~~w-~~~~a~~~~~~~~~~~----p~~--~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 764 (819)
-...| .++.++..+.+.+++. |.. + ..+..|+.++...|+.++|.....++.....
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 11123 4566666666666542 221 1 2334788999999999999999888876543
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.01 E-value=9.5 Score=35.61 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCC----CchhHHHHHHHHHhCCCchHHHH
Q 039792 680 EDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPM----DSGSYTLLSNTFACNSMWADAKQ 754 (819)
Q Consensus 680 ~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~ 754 (819)
++|.+.|-.+...+.--+++....+...|.+. |.+.+...+-+++++.++ |+..+..|+.+|...|+++.|--
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr--D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKR--DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 45666666665555445555555666666544 667777777777776443 57899999999999999988753
No 309
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.91 E-value=1.3e+02 Score=34.59 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHH
Q 039792 738 LLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 738 ~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
.+.+.|-..|+.++|.+.+++..
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 34556778899999999988764
No 310
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=78.70 E-value=46 Score=29.33 Aligned_cols=71 Identities=18% Similarity=0.024 Sum_probs=38.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 039792 537 YTQQLENEEAIKLYLELLLSQQ--RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMY 607 (819)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 607 (819)
..+.|++++|.+.|+.+...-. +-....-..++.++.+.++++.|...++..++.++...-.-|...+.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3455666666666666665311 1122334456666666777777777777666665543333344444443
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.44 E-value=48 Score=29.38 Aligned_cols=49 Identities=10% Similarity=-0.063 Sum_probs=25.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
.++.+++..++..+.-..++ ....-..-.-.+...|++.+|..+|++..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 55666666666655544332 11122222333556666666666666665
No 312
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.69 E-value=23 Score=32.41 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCC----HHHHHHHHHHHHh-c----CCccCchHHHHHHHHhhc
Q 039792 644 PMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGL----IEDGLDHFQSMAG-F----GIEPGMEHYASVVSLLGR 710 (819)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----~~~a~~~~~~m~~-~----g~~p~~~~y~~li~~l~r 710 (819)
+++|+.-|++.+. +.|+. .++..+..++...+. ..+|.++|++..+ + ...|+.+.|..-+++..+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 4567777777777 88886 578888888776553 2344444444332 1 245666666555554443
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.66 E-value=1.1e+02 Score=33.08 Aligned_cols=160 Identities=9% Similarity=0.025 Sum_probs=98.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSAC 673 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 673 (819)
|-....++++.++..-++.-...+..+|. ..+-..+-.++.+|..+ ..++-..+|+++.+ ..-|.+.+.--+.-+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHH
Confidence 44455567777776666666666666665 44556777888888888 55777888888888 556666555555555
Q ss_pred HccCCHHHHHHHHHHHHhcCCcc------CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC--chhHHHHHHHHHh
Q 039792 674 SHAGLIEDGLDHFQSMAGFGIEP------GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD--SGSYTLLSNTFAC 745 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~~g~~p------~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~ 745 (819)
...++.+.+..+|.++... +.| -.+.|.-++...|. |.+.-.+...+.-+-.... ...+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i~d---D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELIGD---DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhccc---cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5558888888888887752 222 12355566665554 4444443333333222211 1223334455677
Q ss_pred CCCchHHHHHHHHHHhC
Q 039792 746 NSMWADAKQVRKKMDLD 762 (819)
Q Consensus 746 ~g~~~~a~~~~~~m~~~ 762 (819)
..+|+||.++.+.+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 88999999998866553
No 314
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.65 E-value=1.3e+02 Score=33.98 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=17.0
Q ss_pred CchhHHHHHHHHHhC----CCchHHHHHHHHHHhCC
Q 039792 732 DSGSYTLLSNTFACN----SMWADAKQVRKKMDLDG 763 (819)
Q Consensus 732 ~~~~~~~l~~~y~~~----g~~~~a~~~~~~m~~~g 763 (819)
++.....|+..|... .+.+.|...+....+++
T Consensus 470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 445555555555543 23555655555555444
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.66 E-value=2.3 Score=37.97 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=60.4
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 039792 365 SVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSE 444 (819)
Q Consensus 365 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 444 (819)
.++..+.+.+..+....+++.+.+.+...+....+.++..|++.++.++..++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45666777778888888888888777677788889999999998887887777774332 334556666777777777
Q ss_pred HHHHHHHH
Q 039792 445 ALDLFHEM 452 (819)
Q Consensus 445 A~~~~~~m 452 (819)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77776665
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.60 E-value=5.6 Score=34.98 Aligned_cols=50 Identities=4% Similarity=-0.045 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
+.+.++.+..-+--+.|+.++.-..-++++...|+|+||.++++...+.+
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 55556666666667788888888888999999999999999998887654
No 317
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.33 E-value=7 Score=35.02 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
+.+.++.++.-+--+.|+.++.-..-++++...|+|.+|..+++.+.+.+
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 44455555555556667777777777777777777777777777765543
No 318
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.21 E-value=15 Score=31.76 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHc-cCCCC-chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAIS-IDPMD-SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
|+..|..+++.+++ -.|+. ....+.|+-.+++.|+|+++.++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 88899999999997 44543 35667788899999999999999998765
No 319
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.02 E-value=77 Score=30.48 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=41.9
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCccCchHHHH-------HHHHhhcccchhhhHHHHHHHHHccCCCCchh--HHHHHHH
Q 039792 672 ACSHAGLIEDGLDHFQSMAGFGIEPGMEHYAS-------VVSLLGRNVWNVELGRYAAEMAISIDPMDSGS--YTLLSNT 742 (819)
Q Consensus 672 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~-------li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~ 742 (819)
--...|++.+|+.+|++.....+..+.--|+. .+--+++. |.-.+..+.++..+++|.-..+ +..|..+
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~--D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA--DEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc--cHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 34456778888888888777555444433432 22222222 6667788899999999974433 3344443
Q ss_pred H
Q 039792 743 F 743 (819)
Q Consensus 743 y 743 (819)
.
T Consensus 241 ~ 241 (288)
T KOG1586|consen 241 L 241 (288)
T ss_pred H
Confidence 3
No 320
>PRK09687 putative lyase; Provisional
Probab=75.35 E-value=97 Score=31.32 Aligned_cols=193 Identities=8% Similarity=-0.093 Sum_probs=96.8
Q ss_pred CCeeehhhhHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH--HHHHHHHHHHhCCCCchh
Q 039792 525 RDIVVWNAMLLGYTQQLEN----EEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKH--GQQFHNHLIKLGLDFDSF 598 (819)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~ 598 (819)
+|...=..-+.++.+.|+. .+++..+..+... .|+...-...+.++...+.-.. .......+...-..++..
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~ 143 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTN 143 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHH
Confidence 3333333344455555542 3566666655332 3555555555555554432111 112222222222233555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHG-EPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG 677 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 677 (819)
+-...+.++++.|+.+....+..-...+|...-..-+.++...+ +.+++...+..+.. .+|...-...+.++.+.|
T Consensus 144 VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 144 VRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccC
Confidence 55666677777776433333333333555544444444555442 24456666666653 556666667777777777
Q ss_pred CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCC
Q 039792 678 LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDP 730 (819)
Q Consensus 678 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p 730 (819)
. .++...+-...+.+. .....+.++|.- ..+.+....+++++.+|
T Consensus 221 ~-~~av~~Li~~L~~~~-----~~~~a~~ALg~i--g~~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 221 D-KRVLSVLIKELKKGT-----VGDLIIEAAGEL--GDKTLLPVLDTLLYKFD 265 (280)
T ss_pred C-hhHHHHHHHHHcCCc-----hHHHHHHHHHhc--CCHhHHHHHHHHHhhCC
Confidence 6 456666655555332 123455666654 33455556666665555
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.57 E-value=7.3 Score=25.43 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
+++.|...|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455566666666666666666665543
No 322
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.92 E-value=17 Score=29.22 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=37.2
Q ss_pred chhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHH
Q 039792 240 SDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVL 286 (819)
Q Consensus 240 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (819)
.-++.+-++.+....+.|++....+.|++|.+.+++..|.++++.+.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555666666677888888888889999998888888888888766
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.35 E-value=46 Score=27.07 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIE 657 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 657 (819)
.++|..|-+-+...+-. ...+--.-+..+...|++++|..+.+....||...|-+|-. .+.|-..++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44555555555443321 12222222345678899999999988888899988877643 3556666666667777665
Q ss_pred CCCCCchhH
Q 039792 658 GLEPNYITF 666 (819)
Q Consensus 658 g~~p~~~t~ 666 (819)
| .|...+|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 5 4443333
No 324
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.16 E-value=93 Score=30.15 Aligned_cols=139 Identities=12% Similarity=0.096 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHh
Q 039792 499 GSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLS---QQ--RPNEFTFAALITAAS 573 (819)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~ 573 (819)
|+--..+|..+|.++.|-..+++.-+ ...+.++++|+++|++-..- +- +--...+..+-+.+.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 44455667777776666555554321 22344566777776664421 10 011122333444455
Q ss_pred ccCChHHHHHHHHHHH----HhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhc---CC----CCChHhHHHHHHHHHhC
Q 039792 574 NLGSLKHGQQFHNHLI----KLGLDFD-SFITSALIDMYAKCGSLEDAYETFGS---TT----WKDVACWNSMICTNAHH 641 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~----~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~---~~----~~~~~~~~~li~~~~~~ 641 (819)
+...+++|-..+..-. +..--++ -..+.+.|-.|.-..++..|.+.++. ++ ..|..+...|+.+|- .
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-E 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-c
Confidence 5555555544333221 1111112 23345555566667788889998887 33 335667788888874 4
Q ss_pred CChHHHHHH
Q 039792 642 GEPMKALLL 650 (819)
Q Consensus 642 g~~~~A~~~ 650 (819)
|+.+++..+
T Consensus 241 gD~E~~~kv 249 (308)
T KOG1585|consen 241 GDIEEIKKV 249 (308)
T ss_pred CCHHHHHHH
Confidence 555554443
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.03 E-value=6.5 Score=26.51 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 737 TLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 737 ~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
..|+.+|...|+.+.|.+++++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468999999999999999999887644
No 326
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.83 E-value=32 Score=34.36 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC-CCe-----eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039792 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ-RDI-----VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFT 564 (819)
Q Consensus 491 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 564 (819)
|......+...++..-....+++++...+-++.. |+. .+-.+.++.+. .=++++++.++..=+.-|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 4444555556666666667778888887777764 211 11122333333 3467789999888888999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLG 592 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 592 (819)
+..+|+.+.+.+++..|.++...++...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999887776543
No 327
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.68 E-value=34 Score=30.28 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=63.2
Q ss_pred HHHHHhCCCCCc--chhhHHHHHHHhcCChhHHHHHHhcCC---------CCCeeeHHHHHHHHHhcCC-chhHHHHHHH
Q 039792 182 SFVIKSGFDRDV--YVGTSLMNLYAKNGSVDDAKFVFDGLM---------VKTAVSWTTIITGYVKSGR-SDLSLNLFNQ 249 (819)
Q Consensus 182 ~~~~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~ 249 (819)
..+.+.+..++. ...|+++.-....+++....++++.+. ..+..+|.+++.+..+... ---+..+|..
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 334444555554 346777777777777777777777652 2356678888888866555 3456778888
Q ss_pred HHHCCCCCChhhHHHHHHHhhcc
Q 039792 250 MRETDVVHDKYLLSSVLSACSML 272 (819)
Q Consensus 250 m~~~g~~p~~~t~~~ll~~~~~~ 272 (819)
|++.+.+++..-|..+|.+|.+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcC
Confidence 88878888888888888887765
No 328
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.79 E-value=1.6e+02 Score=31.80 Aligned_cols=113 Identities=12% Similarity=-0.038 Sum_probs=48.5
Q ss_pred HHHhHhCCChHHHHHHHhcccCCC----cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchH--HHHHHHhcCCc
Q 039792 301 MDFYSKCGRVKMARRLFDEIEVKN----IISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFAC--SSVLTSCGSVE 374 (819)
Q Consensus 301 i~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~ 374 (819)
+...++.|+.+.+..+++.-...+ ..-++ .+...+..|+. ++++.+.+.|..|+.... .+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 344455666666666665432111 11122 22333344443 455555666666543221 22333333445
Q ss_pred chhhHHHHHHHHHHcCCCCChh--HHhHHhhhhhcCCCHHHHHHHHHhcC
Q 039792 375 ALEQGRQVHAYSFKANIESDNF--VKNSLVDMYAKCDSLTEARKVFDVMA 422 (819)
Q Consensus 375 ~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (819)
+.+... .+.+.|..++.. ...+-+...+..|+.+-+..+++.-.
T Consensus 147 ~~~~v~----~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga 192 (413)
T PHA02875 147 DIKGIE----LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA 192 (413)
T ss_pred CHHHHH----HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 544333 333444433221 11223333444566665555555433
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.00 E-value=58 Score=30.89 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh--cCCccCchHHHHHHH
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG--FGIEPGMEHYASVVS 706 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~p~~~~y~~li~ 706 (819)
+.-++.+.+.+...+|+.+.++=++ -+|.. .+-..+...++-.|+|++|..-++-... ....+....|..+|.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3345566666677777777666665 35543 4555666677777777777766666554 333444445554443
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.35 E-value=26 Score=38.21 Aligned_cols=100 Identities=18% Similarity=0.090 Sum_probs=62.7
Q ss_pred hHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHH
Q 039792 304 YSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVH 383 (819)
Q Consensus 304 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 383 (819)
..+.|+++.|.++..+. .+..-|..|-.+..+.|++..|.+.|...+. |..|+-.+...|+.+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 44677888887776543 3456788888888889999888888877654 445555555666655555554
Q ss_pred HHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHh
Q 039792 384 AYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDV 420 (819)
Q Consensus 384 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (819)
....+.|.. |.-..+|...|+++++.+++.+
T Consensus 716 ~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 444444432 2333344555666666555543
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.95 E-value=50 Score=30.33 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHccCCCCchhHHHHHHHHHhCCC----chHHHHHHHHHH
Q 039792 716 ELGRYAAEMAISIDPMDSGSYTLLSNTFACNSM----WADAKQVRKKMD 760 (819)
Q Consensus 716 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m~ 760 (819)
+.|..-+++++.++|+...++..++++|...|. -.+|.+.+++..
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 344556889999999999999999999987543 334455554443
No 332
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.32 E-value=20 Score=38.84 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCCCChHhHHHHH--HHH-HhCCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHccCCHHHHHHHHH
Q 039792 613 LEDAYETFGSTTWKDVACWNSMI--CTN-AHHGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 613 ~~~A~~~~~~~~~~~~~~~~~li--~~~-~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
-+-|..+|-.|..++...|-+|= ..| ...|+...|.+.+..... ..|- .+....|.+...+.|...+|..++.
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 45566777777777777664432 223 356999999999888876 6663 4778889999999999999999999
Q ss_pred HHHh-cCCccCchHHHHHHHHhhcc---cchhhhHHHHHHHHHccCCCCchhHHHHHHHHH
Q 039792 688 SMAG-FGIEPGMEHYASVVSLLGRN---VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFA 744 (819)
Q Consensus 688 ~m~~-~g~~p~~~~y~~li~~l~r~---~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 744 (819)
+... .--+| ..+|. +|++ .-|++.|.++++.+++++|+++..-..|-.+-+
T Consensus 667 q~l~~~~sep-l~~~~-----~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 667 QALAINSSEP-LTFLS-----LGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHhhcccCc-hHHHh-----cchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 8887 32223 23332 2222 118999999999999999999988887766654
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.04 E-value=24 Score=28.74 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHh
Q 039792 242 LSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRR 288 (819)
Q Consensus 242 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (819)
+..+-++.+....+.|++....+.|++|.+.+++..|.++++.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666778888888888888888888888888888877654
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=67.31 E-value=43 Score=27.07 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhh
Q 039792 645 MKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLG 709 (819)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~ 709 (819)
-++.+-++.+....+.|+.....+.+.||.+..++.-|.++|+..+. .|. ....|..+++-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqeik 87 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEIK 87 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHHh
Confidence 34555666777777899999999999999999999999999998875 443 4457777776543
No 335
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.46 E-value=80 Score=33.01 Aligned_cols=130 Identities=12% Similarity=0.166 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC------CChHhHHHHHHHHHhCCChHHHHHHHHHHHHc---------CCCCC
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTTW------KDVACWNSMICTNAHHGEPMKALLLFREMIIE---------GLEPN 662 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~ 662 (819)
..+.-+.+-|..||+++.|.+.+.+... .-+..|-.+|..-.-.|++......-.+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4456678888999999999998888551 12335555555555566666665555555431 12222
Q ss_pred chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCC-----cc-CchHHH--HHHHHhhcccchhh---hHHHHHHHHHccCC
Q 039792 663 YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGI-----EP-GMEHYA--SVVSLLGRNVWNVE---LGRYAAEMAISIDP 730 (819)
Q Consensus 663 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~-----~p-~~~~y~--~li~~l~r~~w~~~---~a~~~~~~~~~~~p 730 (819)
...+..|...+ .+++..|.+.|-.... ... .| |+..|+ |.+..++|+ ++. .+...++..++++|
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~--~Lk~~vi~n~~Fk~flel~P 306 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQ--DLKLNVIKNESFKLFLELEP 306 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHH--HHHHHHHcchhhhhHHhcCh
Confidence 23344444433 3477777777755543 222 23 233444 223333333 332 23457888899988
Q ss_pred C
Q 039792 731 M 731 (819)
Q Consensus 731 ~ 731 (819)
.
T Consensus 307 q 307 (466)
T KOG0686|consen 307 Q 307 (466)
T ss_pred H
Confidence 5
No 336
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.53 E-value=1.6e+02 Score=29.77 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=12.0
Q ss_pred HHHhCCChHHHHHHHHHH
Q 039792 637 TNAHHGEPMKALLLFREM 654 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m 654 (819)
.+.+.+++++|.+.|+-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 445667778887777643
No 337
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.34 E-value=1.5e+02 Score=29.53 Aligned_cols=106 Identities=20% Similarity=0.031 Sum_probs=55.9
Q ss_pred hcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHhccCChH-HHH
Q 039792 508 KCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYL----ELLLSQQRPNEFTFAALITAASNLGSLK-HGQ 582 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~ 582 (819)
+.+++++|.+++..- ...+.++|+..-|-++-. -..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345566666655432 234556666555544433 3334566777766666666665444222 233
Q ss_pred HHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 583 QFHNHLIKL-----GLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 583 ~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
.+.+.+++. ...-|+.....+...|.+.|++.+|+..|-...
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 444444431 222377888899999999999999998775544
No 338
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=64.84 E-value=95 Score=33.53 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=30.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 039792 568 LITAASNLGSLKHGQQFHNHLIKLGLD-FDSFITSALIDMYAKCGSLEDAYETFGST 623 (819)
Q Consensus 568 ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 623 (819)
+..++-+.|+.++|.+.+.++.+..+. ....+...|++.+...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444445556666666666666543322 12334455666666666666666665543
No 339
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.69 E-value=57 Score=32.17 Aligned_cols=124 Identities=10% Similarity=-0.000 Sum_probs=64.0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCch-------hHHHHHHHHHccCCHHHHHHHHHHHHh----cCCccCchHHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYI-------TFVGVLSACSHAGLIEDGLDHFQSMAG----FGIEPGMEHYASVV 705 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~~~a~~~~~~m~~----~g~~p~~~~y~~li 705 (819)
-..+.+++++|+..+.+....|+..|.. |...+...|...|+...-.+...+..+ ..-.-......+++
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 3445667777777777777777665543 344555667777765554443333222 11111223334444
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCC------chhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMD------SGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+.+....-+++.-..+++..++..-.. -+.-..++.+|.+.|+|.+|..+..-..
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444322112222222222222221100 0122357889999999999999876554
No 340
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.34 E-value=11 Score=22.04 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
..|..++..|...|++++|...+++..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4688899999999999999999886654
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.66 E-value=2.8e+02 Score=31.95 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 039792 328 WTTLIGGYMQNSFDREAMKLFTEMTR 353 (819)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (819)
-..|..-|...+++..|+.++-..++
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccC
Confidence 33477788888888888888877654
No 342
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=63.43 E-value=2.4e+02 Score=32.07 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 039792 547 IKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWK 626 (819)
Q Consensus 547 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 626 (819)
....+++..+-.-.+.....-++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+..+.++|+......+-+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~---- 463 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADR---- 463 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHH----
Confidence 444455554433345566677788888888888888777765443221 12334444455555555444433222
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH---HccCCHHHHHHHHHHHHhcCCccCchHHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSAC---SHAGLIEDGLDHFQSMAGFGIEPGMEHYAS 703 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 703 (819)
++..|..+|... ...+.+.+...-+.-+..+|...+.-+ .+.|++.+|.+.+-.+...++.|...-...
T Consensus 464 -------ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~L 535 (566)
T PF07575_consen 464 -------LLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLL 535 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------HHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHH
Confidence 334555555322 222332222211111223333333222 335888888888888888888887655555
Q ss_pred HHHHh
Q 039792 704 VVSLL 708 (819)
Q Consensus 704 li~~l 708 (819)
+.|.+
T Consensus 536 L~d~l 540 (566)
T PF07575_consen 536 LCDAL 540 (566)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55544
No 343
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.43 E-value=2.6e+02 Score=33.16 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=31.0
Q ss_pred HHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 673 CSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
+.+.|+.++|+.++-.... |.+.|........+-++.+...|.++..+|...
T Consensus 694 l~rl~khe~aL~Iyv~~L~----------------------d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 694 LGRLGKHEEALHIYVHELD----------------------DIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred HhhhhhHHHHHHHHHHHhc----------------------chhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 3366677777666544432 556666666666664444666777776666655
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.36 E-value=42 Score=27.44 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhh
Q 039792 646 KALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLG 709 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~ 709 (819)
+..+-++.+....+.|+.....+.+.||.+..++.-|.++|+..+. .|.. ...|..+++-+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqElk 90 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHHh
Confidence 3444556666667889999999999999999999999999998887 5533 337887776553
No 345
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.15 E-value=58 Score=28.83 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=67.3
Q ss_pred HHHhCCCCCh--hhhhHHHHHHHcCCChhhHHHHHhccCC---------CCcchHHHHHHHHHcCCC-hhhHHHHHHHHH
Q 039792 78 IAISGLQCDT--FLANMLLRNYSKANDLDGARKLFDTMSE---------RNLVSWSSLVSMYTKKGY-GEEALMVFIGFL 145 (819)
Q Consensus 78 ~~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 145 (819)
+...+..+++ ...|.+++-.+..+++.....+++.+.. .+-.+|.+++.+.++... ---+..+|..|
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L- 106 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL- 106 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH-
Confidence 4445555554 4568888888888888888888888742 455688999999977766 34567888888
Q ss_pred HcCCCCCCcccHHHHHHHHhcCC
Q 039792 146 KVGNGRPDDYILSSVICACTQLG 168 (819)
Q Consensus 146 ~~~~~~p~~~~~~~ll~~~~~~~ 168 (819)
++.+.+++..-|..++++|.+..
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCC
Confidence 66777888888999998887653
No 346
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.12 E-value=43 Score=31.19 Aligned_cols=56 Identities=20% Similarity=0.124 Sum_probs=31.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 039792 537 YTQQLENEEAIKLYLELLLSQQRPNE-----FTFAALITAASNLGSLKHGQQFHNHLIKLGL 593 (819)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 593 (819)
+..+|++++|..-|.+.+.. +++.. +.|..-..+..+.+.++.|..-....++.++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence 56677888888877777664 23322 2233333344555666666655555555543
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=62.01 E-value=68 Score=30.15 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH---hCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 544 EEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIK---LGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 544 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
++|...|-++...+.--++ ..-..+..+-...+.+++..++-...+ .+-.+|+.++.+|+..|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 6777777777766544443 344444444446677888887777665 233567888888888888888887763
No 348
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=61.73 E-value=2.6e+02 Score=31.03 Aligned_cols=177 Identities=10% Similarity=0.011 Sum_probs=96.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCCCC---eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQRD---IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR--PNEFTFAALI 569 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll 569 (819)
+..+|..-++.-.+.|+.+.+.-+|++..-|- ...|--.+.-....|+.+-|-.++..-.+--++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34455555666666677777766666665431 122333333333346666666655544433222 2222222222
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHH---HHHhcCC--CCChHhHHHHHH-----HH
Q 039792 570 TAASNLGSLKHGQQFHNHLIKLGLDFD-SFITSALIDMYAKCGSLEDAY---ETFGSTT--WKDVACWNSMIC-----TN 638 (819)
Q Consensus 570 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~~~--~~~~~~~~~li~-----~~ 638 (819)
+-..|+...|..+++.+...- |+ ..+-.--+.+.-+.|..+.+. +++.... ..+....+.+.. .+
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 345678888888888877654 22 222233355666777777777 4443333 222222222222 23
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccC
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAG 677 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 677 (819)
.-.++.+.|..++.++.+ +.|+ ..-|..++.-+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 445788889999999987 5554 456777777555544
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=61.36 E-value=11 Score=22.89 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=13.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 039792 634 MICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
+..+|.+.|+.++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555666666666666655
No 350
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.02 E-value=1.6e+02 Score=28.40 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=9.1
Q ss_pred cCCCHHHHHHHHHhc
Q 039792 407 KCDSLTEARKVFDVM 421 (819)
Q Consensus 407 ~~g~~~~A~~~~~~m 421 (819)
-.+.+++|.++|.+.
T Consensus 26 g~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 26 GSNKYEEAAELYERA 40 (288)
T ss_pred CCcchHHHHHHHHHH
Confidence 344667777766554
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.93 E-value=16 Score=21.33 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
.|..+...+...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555566666666666666666654
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.28 E-value=3.4e+02 Score=31.85 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHH
Q 039792 240 SDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLR 287 (819)
Q Consensus 240 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (819)
.+++-++|+.-. |...|..+.+.+ |.+.+-|-.|.++.....+
T Consensus 196 ~eE~~~fl~~~~--~l~Ld~~~~~~L---~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 196 TEEAAAFLNDRG--SLPLDAADLKAL---YDRTEGWAAALQLIALALR 238 (894)
T ss_pred hHHHHHHHHHcC--CCCCChHHHHHH---HhhcccHHHHHHHHHHHcc
Confidence 455555555432 244555555444 2344455555555554444
No 353
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.58 E-value=3.3e+02 Score=31.46 Aligned_cols=92 Identities=5% Similarity=-0.112 Sum_probs=55.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChHhHHHHHHHHHhCCCh
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWK------DVACWNSMICTNAHHGEP 644 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 644 (819)
.+...|....|...+..+.+. . +..-...+.....+.|..+.+.......... -+..|...+..+++.-.+
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v 492 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVAS-R--SKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI 492 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence 345567777777777766653 2 3344455566666677777776655543321 122466667777766667
Q ss_pred HHHHHHHHHHHHcCCCCCchh
Q 039792 645 MKALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~t 665 (819)
+.++-.---.+++++.|+..+
T Consensus 493 ~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 493 PQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred CHHHHHHHHHHhcCCCCCCcc
Confidence 776655555567788887553
No 354
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.90 E-value=3.6e+02 Score=32.04 Aligned_cols=129 Identities=16% Similarity=0.244 Sum_probs=73.2
Q ss_pred hHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCC--CCcchhh
Q 039792 120 SWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFD--RDVYVGT 197 (819)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~--~~~~~~~ 197 (819)
-|..|+--|...|.+++|++++.+...... .-|... .+..+.+.+++.+.|-+ +=.+.|.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~-~~d~~~-----------------~~~~e~ii~YL~~l~~~~~~Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS-DTDSFQ-----------------LDGLEKIIEYLKKLGAENLDLILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc-ccccch-----------------hhhHHHHHHHHHHhcccchhHHHHHh
Confidence 488999999999999999999998722110 011000 11233455555555432 1112222
Q ss_pred HHHHHHHhcCChhHHHHHHhcCC--CCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 039792 198 SLMNLYAKNGSVDDAKFVFDGLM--VKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSM 271 (819)
Q Consensus 198 ~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 271 (819)
..+ -..+.+...++|-.-. +.....-.. +-.|......+-++.+++.+....-.++..-.+.++..|+.
T Consensus 568 ~wv----l~~~p~~gi~Ift~~~~~~~~sis~~~-Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 568 DWV----LNKNPEAGIQIFTSEDKQEAESISRDD-VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhh----hccCchhheeeeeccChhhhccCCHHH-HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 211 1345666666665411 112222222 33566777888888999988876666666667777666643
No 355
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=57.81 E-value=1.8e+02 Score=27.79 Aligned_cols=159 Identities=14% Similarity=-0.046 Sum_probs=79.3
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD-FDSFITSALIDM 606 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 606 (819)
..||-+.--+...|+++.|.+.|+...+....-+-...+--| ++--.|+++.|.+=+...-+..+. |-...|-.++
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 355555555666666666666666665532211211111111 223445666665544444333322 2222222221
Q ss_pred HHhcCCHHHHH-HHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-------chhHHHHHHHHHccCC
Q 039792 607 YAKCGSLEDAY-ETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-------YITFVGVLSACSHAGL 678 (819)
Q Consensus 607 ~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~a~~~~g~ 678 (819)
...-+..+|. .+.++....|..-|..-|..|--..-.+ ..++++++. +-.-+ ..||..|..-+...|+
T Consensus 177 -E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a-~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKA-DATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 1223444454 3334455555555655554443222222 223444443 11111 2468888888999999
Q ss_pred HHHHHHHHHHHHhcC
Q 039792 679 IEDGLDHFQSMAGFG 693 (819)
Q Consensus 679 ~~~a~~~~~~m~~~g 693 (819)
+++|..+|+-.+...
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887643
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.10 E-value=27 Score=26.98 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=34.8
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC-c-hhHHHHHHHHHccCCHHHHHHHH
Q 039792 640 HHGEPMKALLLFREMIIEGLEPN-Y-ITFVGVLSACSHAGLIEDGLDHF 686 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~ 686 (819)
...+.++|+..|...++.-..|. . .++..++.+++..|++++.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888999988887544443 2 46778888999999988877663
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.81 E-value=73 Score=26.00 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 039792 275 VGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRS 354 (819)
Q Consensus 275 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (819)
.++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-+|-.. +.|..+....-+.+|-..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34444444444433322 222333334556788999999999999999999999877653 556666666666666655
Q ss_pred C
Q 039792 355 G 355 (819)
Q Consensus 355 g 355 (819)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
No 358
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=56.46 E-value=26 Score=37.25 Aligned_cols=198 Identities=15% Similarity=0.151 Sum_probs=112.7
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------------ChHhHHHHHHHH----
Q 039792 576 GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWK-------------DVACWNSMICTN---- 638 (819)
Q Consensus 576 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~---- 638 (819)
+.+++-.++++.+.+.|-. | ....-|+.|.+.+++++|...+++-... .+.....++.+.
T Consensus 68 ~~~~e~i~lL~~l~~~g~a-d--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEGGA-D--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHccCC-C--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 3566666677777666521 2 4445677888888888888777654321 122333344332
Q ss_pred -HhCCChHHHHHHHHHHHHcCCCCCc---hhHHHHHHHHHccCCHHHHHHHHH---HHHh----cCCccCchHHHHHHHH
Q 039792 639 -AHHGEPMKALLLFREMIIEGLEPNY---ITFVGVLSACSHAGLIEDGLDHFQ---SMAG----FGIEPGMEHYASVVSL 707 (819)
Q Consensus 639 -~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~---~m~~----~g~~p~~~~y~~li~~ 707 (819)
.+||. ..+..+++-+...|+.-.. ++|+. -|++.=-+++++..|+ ++.. .|+..+.+.+++|...
T Consensus 145 QvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgt 220 (480)
T TIGR01503 145 QIRHGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGT 220 (480)
T ss_pred eccCCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCC
Confidence 34444 3577788888888877643 34432 3455445666655554 3332 4888888888877654
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchH---HHHHHHHHHhCCCcCCCceeEEEECCEEEEEEe
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWAD---AKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVA 784 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~---a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~ 784 (819)
|.-- -+..+..+.|-++..+-.- -.++-.|.+.|+..+ |...++++-..=+ +.-|+.-|++.-.+|.++-
T Consensus 221 LvPP--sisiav~ilE~Lla~eqGV----ksisvgy~Q~Gn~~QDiaai~aL~~l~~eYl-~~~g~~Dv~i~tV~hqwMG 293 (480)
T TIGR01503 221 LVPP--SISNAIGIIEGLLAAEQGV----KNITVGYGQVGNLTQDIAALRALEEQTNEYL-KAYGYNDVFVTTVFHQWMG 293 (480)
T ss_pred ccCh--HHHHHHHHHHHHHHHHcCC----eEEEeccccCCChHHHHHHHHHHHHHHHHHH-HhCCCCceEEEEEeeeccC
Confidence 4432 4455555566555544321 112335777776654 4444444433333 3345655777777888887
Q ss_pred CCC
Q 039792 785 RDK 787 (819)
Q Consensus 785 ~~~ 787 (819)
|=+
T Consensus 294 ~FP 296 (480)
T TIGR01503 294 GFP 296 (480)
T ss_pred CCC
Confidence 643
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.18 E-value=2.1e+02 Score=28.73 Aligned_cols=147 Identities=12% Similarity=0.035 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHH-------Hc-------------------CCCCCch
Q 039792 613 LEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMI-------IE-------------------GLEPNYI 664 (819)
Q Consensus 613 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~-------------------g~~p~~~ 664 (819)
..+|+++|--.. +...++-+-+|..+-...+..+|...+...+ .. +.+-|..
T Consensus 149 s~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~ 228 (361)
T COG3947 149 SRKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQ 228 (361)
T ss_pred hhHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHH
Confidence 467888887655 2234444556777777777777777655432 10 1111222
Q ss_pred hHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCccCc-------------hHHHHHHHHhhcc----cchhhhHHHHHHHHH
Q 039792 665 TFVGVLSACSH-AGLIEDGLDHFQSMAGFGIEPGM-------------EHYASVVSLLGRN----VWNVELGRYAAEMAI 726 (819)
Q Consensus 665 t~~~ll~a~~~-~g~~~~a~~~~~~m~~~g~~p~~-------------~~y~~li~~l~r~----~w~~~~a~~~~~~~~ 726 (819)
-|...+.-... .-.++++.++...... +.-|+. ..|..++..-++. + ....|.++.++++
T Consensus 229 e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g-~~neAi~l~qr~l 306 (361)
T COG3947 229 EYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAG-KPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHh
Confidence 33333332221 2234555555444322 111211 1222232222221 1 7778999999999
Q ss_pred ccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 727 SIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 727 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.++|-+...|-.|.++|+..|+--+|.+-++++.+
T Consensus 307 tldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 307 TLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 99999999999999999999998888888777743
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=55.30 E-value=49 Score=31.36 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeE-EEECCEEEEEEeCCCCCCC
Q 039792 736 YTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSW-IEVNNEVHAFVARDKSHHA 791 (819)
Q Consensus 736 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~-i~~~~~~~~f~~~~~~~~~ 791 (819)
+..|--.|.-.+.-++|.++-++-.= .+|+-|- +-++.+ .|+.++..|+-
T Consensus 207 ~a~LparY~gt~e~ddalrLgreTeW----~~p~dsl~~g~Gqr--~~ltd~ge~al 257 (273)
T COG4455 207 SALLPARYHGTGEDDDALRLGRETEW----SEPDDSLATGFGQR--CFLTDDGEVAL 257 (273)
T ss_pred EEEeeeecCCCccchHHHHhcccccc----cCCCcchhcccccE--EEEecCCceee
Confidence 33444557777777777776443221 1244443 333333 47777766653
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.94 E-value=40 Score=27.29 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 735 SYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 735 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...++.++...|++++|.+.+++..+
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456688899999999999999887754
No 362
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.03 E-value=3.3e+02 Score=29.45 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=32.4
Q ss_pred hHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 039792 428 SYNAMIEGYSK---EEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSV 474 (819)
Q Consensus 428 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 474 (819)
.+..+++++.+ ..+.+.|+..+..|.+.|..|....-..+..++...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 34555555555 478999999999999999888765555555444333
No 363
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=52.53 E-value=2.6e+02 Score=28.12 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=28.3
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHhcCC-----CCeeehhhhHHHHHhcCCHHH
Q 039792 493 FLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ-----RDIVVWNAMLLGYTQQLENEE 545 (819)
Q Consensus 493 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~ 545 (819)
.++..+...+++.+++.+++..-.++++.... .|...|...|......|+..-
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 34444555555555555555555555554332 355556666666666666443
No 364
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.51 E-value=60 Score=31.22 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHccCCC------CchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 715 VELGRYAAEMAISIDPM------DSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+..|...++++++.+.. ......+++.++.+.|++++|.+.+.++...
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 44566666777765432 2467788999999999999999999988654
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.22 E-value=1.4e+02 Score=28.95 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=68.2
Q ss_pred CHHHHHHHHhcCC--CCChH-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHH
Q 039792 612 SLEDAYETFGSTT--WKDVA-CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 612 ~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
++..|..-+.+.. .|.+. -|+.=+-++.+..+++.+..--.+.++ +.||.+ ....+..+......+++|+..+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3444444443333 55553 345566677777888888877777777 888876 45566667778888899988888
Q ss_pred HHHh----cCCccCchHHHHHHHHhhcccchhhhHHH
Q 039792 688 SMAG----FGIEPGMEHYASVVSLLGRNVWNVELGRY 720 (819)
Q Consensus 688 ~m~~----~g~~p~~~~y~~li~~l~r~~w~~~~a~~ 720 (819)
+... ..+.|.......|.++--. -|++...++
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~ak~~-~w~v~e~~R 138 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDAKKK-RWEVSEEKR 138 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhC-ccchhHHHH
Confidence 8743 4556666666666655443 365555544
No 366
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.97 E-value=56 Score=31.48 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+.+...+-.+++++++|+..-....|+........+++|...+.+..
T Consensus 59 ~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 59 HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 33444444555666666666666666666666666666666655553
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.66 E-value=3.5e+02 Score=29.10 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCCchhH--HHHHHHHhHhCCChHHHHHHHhcccCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 039792 280 QIHAHVLRRGMGMDVSV--INVLMDFYSKCGRVKMARRLFDEIEVK---NIISWTTLIGGYMQNSFDREAMKLFTEMTRS 354 (819)
Q Consensus 280 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (819)
++.+.+++.|..++... ..+.+...+..|+.+-+..+++.-... |..-++.|.. .+..|+. ++.+.+.+.
T Consensus 116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~-A~~~g~~----eiv~~Ll~~ 190 (413)
T PHA02875 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLII-AMAKGDI----AICKMLLDS 190 (413)
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHhC
Confidence 34445555565543221 223344455667766666666543322 2223333333 3334443 345556666
Q ss_pred CCCCCcchH---HHHHHHhcCCcchhhHHHHHHHHHHcCCCCC
Q 039792 355 GWKPDDFAC---SSVLTSCGSVEALEQGRQVHAYSFKANIESD 394 (819)
Q Consensus 355 g~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 394 (819)
|..|+...- .+++...+..|+.+ +.+.+.+.|..++
T Consensus 191 ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 191 GANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 766654321 23343333444433 4444555666554
No 368
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.65 E-value=96 Score=24.62 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=22.3
Q ss_pred hcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHH
Q 039792 609 KCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 647 (819)
..|+.+.|.++++.++ ..+..|..++.++...|...-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 5555566666666666554443
No 369
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.46 E-value=1.8e+02 Score=29.00 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=58.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 039792 534 LLGYTQQLENEEAIKLYLELLL--SQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK-- 609 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 609 (819)
|.+++..+++.+++...-+--+ +.++|.. ...-|-.|++.+....+.++-..-.+..-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 6778888888888775443322 2244443 333444578889999888888877765444455568888777765
Q ss_pred ---cCCHHHHHHHHh
Q 039792 610 ---CGSLEDAYETFG 621 (819)
Q Consensus 610 ---~g~~~~A~~~~~ 621 (819)
.|.+++|+++..
T Consensus 168 LlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 168 LLPLGHFSEAEELVV 182 (309)
T ss_pred HhccccHHHHHHHHh
Confidence 699999998774
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.29 E-value=2.6e+02 Score=27.51 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=101.5
Q ss_pred cCChHHHHHHHHhcCC--C-----CeeehhhhHHHHHhcCCHHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHhccC
Q 039792 509 CFSNKDARLVFDEMNQ--R-----DIVVWNAMLLGYTQQLENEEAIKLYLELLL---SQQ--RPNEFTFAALITAASNLG 576 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~~~~~~g 576 (819)
..++++|..-|++..+ + .......||..+.+.+++++.++.|.+|.. ..+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456777777776543 1 122344577888888888888888887753 112 224456777777777667
Q ss_pred ChHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---C-----CC-------hHhHHHHHH
Q 039792 577 SLKHGQQFHNHLIKL-----GLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---W-----KD-------VACWNSMIC 636 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-----~~-------~~~~~~li~ 636 (819)
+.+....+++.-.+. +-..--.+-.-|...|...|.+.+-.++++... + .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 766666666543321 101111222346666777777777666665443 0 11 235566677
Q ss_pred HHHhCCChHHHHHHHHHHHHcC-CCCCchhHHHHHHHH-----HccCCHHHHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMIIEG-LEPNYITFVGVLSAC-----SHAGLIEDGLDHF 686 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~-----~~~g~~~~a~~~~ 686 (819)
.|....+-.+-..+|++.+.-. -.|.. ....++.-| .+.|.+++|..-|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHH
Confidence 7777777777777888776521 12332 334444444 4567777775433
No 371
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.70 E-value=51 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=23.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 039792 633 SMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGV 669 (819)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 669 (819)
.+.-|+.+.|++++|.+..+.+++ +.|+......|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 355677788888888888888887 77876544433
No 372
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.63 E-value=59 Score=27.20 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHH
Q 039792 512 NKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLL 555 (819)
Q Consensus 512 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 555 (819)
++++.+.+.+ ..-|..|+.-|...|..++|++++.++..
T Consensus 29 ~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 29 LEEVEEVLKE-----HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHH-----cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4444444433 34688899999999999999999998876
No 373
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.45 E-value=2e+02 Score=31.90 Aligned_cols=100 Identities=19% Similarity=0.044 Sum_probs=63.9
Q ss_pred hhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHH
Q 039792 405 YAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIH 484 (819)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 484 (819)
..+.|+++.|.++..+. .+..-|..|.....+.+++..|.+.|.+-.. +..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34668888887776554 4566788898888899999888888887543 445666666666666555555
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHh
Q 039792 485 GLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDE 521 (819)
Q Consensus 485 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 521 (819)
....+.|.. |...-+|...|+++++.+++.+
T Consensus 716 ~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 444444432 3333445555666665555543
No 374
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=48.21 E-value=3.4e+02 Score=28.24 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=31.1
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP---NEFTFAALITAASNLGSLKHGQQFHNHLIK 590 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 590 (819)
.+|..++..+.+.|+++.|...+.++...+..+ ++.....-....-..|+-..|...++..++
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555566666666666666666655432111 122222223333445555666665555554
No 375
>PF15469 Sec5: Exocyst complex component Sec5
Probab=48.12 E-value=1.1e+02 Score=28.43 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=17.7
Q ss_pred CCchHHHHHHHHHHhCCCcCCCceeEEE
Q 039792 747 SMWADAKQVRKKMDLDGLMKEAGRSWIE 774 (819)
Q Consensus 747 g~~~~a~~~~~~m~~~g~~~~~g~s~i~ 774 (819)
...++..++.+.+.+.++..+|.+-||+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3455566666666666777777666653
No 376
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.97 E-value=8.2e+02 Score=32.61 Aligned_cols=110 Identities=12% Similarity=0.006 Sum_probs=71.7
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh--cCC-----ccCchHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG--FGI-----EPGMEHY 701 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~-----~p~~~~y 701 (819)
.+|-.........|+++.|...+-...+.+ .| ..+.--..-..+.|+...|+.++++-.+ .+- +|....-
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 478888888888999999988776666643 22 3445556667889999999999998885 111 1112222
Q ss_pred HHHHHH-----hhcccc-------hhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 702 ASVVSL-----LGRNVW-------NVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 702 ~~li~~-----l~r~~w-------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
+..+.. ++ .| ..+.-...+..+.++.|+....|+.|+.-|
T Consensus 1748 n~~i~~~~~L~~~--~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKIT--KYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhhHHHHHH--HHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 222221 11 24 334456678889999998777777777443
No 377
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.65 E-value=1.7e+02 Score=33.34 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHccCCCC
Q 039792 714 NVELGRYAAEMAISIDPMD 732 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~ 732 (819)
|...+.+++++.+++.|+.
T Consensus 381 d~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 381 DYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred CHHHHHHHHHHHhccCCce
Confidence 7888999999999999864
No 378
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.46 E-value=42 Score=31.68 Aligned_cols=46 Identities=20% Similarity=0.060 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 715 VELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+.....+++.++..| ++..|..++.++...|+.++|.++.+++..
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444556777777777 688899999999999999999999888865
No 379
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=47.11 E-value=62 Score=32.80 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=55.8
Q ss_pred HHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCc
Q 039792 671 SACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMW 749 (819)
Q Consensus 671 ~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 749 (819)
+-|.+.|++++|+..+..-.. +...|- .|..-..+|-|. -....|+.-.+.++.++..-..+|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV--~~~NRA~AYlk~-K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPV--YHINRALAYLKQ-KSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCcc--chhhHHHHHHHH-HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 458899999999999988776 544444 333333334332 1556677777777777765556666666666666777
Q ss_pred hHHHHHHHHH
Q 039792 750 ADAKQVRKKM 759 (819)
Q Consensus 750 ~~a~~~~~~m 759 (819)
.||.+=.+..
T Consensus 182 ~EAKkD~E~v 191 (536)
T KOG4648|consen 182 MEAKKDCETV 191 (536)
T ss_pred HHHHHhHHHH
Confidence 7776654444
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.04 E-value=34 Score=23.11 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=13.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 039792 634 MICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555666666666666666654
No 381
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.54 E-value=2.6e+02 Score=26.33 Aligned_cols=87 Identities=10% Similarity=-0.015 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCC-C-CChH----hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC
Q 039792 604 IDMYAKCGSLEDAYETFGSTT-W-KDVA----CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG 677 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~-~-~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 677 (819)
...+..+|++++|..-++... . .|.. .=-.|.....+.|.+++|+.+++...+.+..+ .....-..++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcC
Confidence 344566677777766666443 2 2211 11224445566677777777666554422211 11222334566666
Q ss_pred CHHHHHHHHHHHHhc
Q 039792 678 LIEDGLDHFQSMAGF 692 (819)
Q Consensus 678 ~~~~a~~~~~~m~~~ 692 (819)
+-++|+.-|.+....
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 667776666666653
No 382
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=46.36 E-value=3.6e+02 Score=27.95 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=70.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHH--HHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMK--ALLLFREMIIEGLEPNYITFVGVLSACSHAGLIE 680 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 680 (819)
+.|.+++.++.+.+..+-+....--.....+|..++ .|-...+ +..+++++... ||......++.+.+......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~L-Eh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCL-EHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHh-cCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 456666666665555555544422222333344333 3333332 33355555543 89999999999999887776
Q ss_pred HHHHHHHHHHhcCCccCchHHHHHHHHhhcccc----hhhhHHHHHHHHHccC
Q 039792 681 DGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW----NVELGRYAAEMAISID 729 (819)
Q Consensus 681 ~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w----~~~~a~~~~~~~~~~~ 729 (819)
.....++..... |...+-..++-.-||+ | |.+......+++.+.+
T Consensus 248 ~~~~~i~~~L~~---~~~~~~e~Li~IAgR~-W~~L~d~~~l~~fle~LA~~~ 296 (340)
T PF12069_consen 248 LVAILIDALLQS---PRLCHPEVLIAIAGRC-WQWLKDPQLLRLFLERLAQQD 296 (340)
T ss_pred HHHHHHHHHhcC---cccCChHHHHHHHhcC-chhcCCHHHHHHHHHHHHccc
Confidence 666656666653 3333445778888887 7 6666666666665543
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.75 E-value=33 Score=25.23 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 646 KALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...++++.+.. ..-|-.-...++.++...|++++|.++++.+..
T Consensus 8 ~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 8 ELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444433 233444455666777777777777777766653
No 384
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.48 E-value=3.3e+02 Score=26.81 Aligned_cols=200 Identities=14% Similarity=0.068 Sum_probs=109.6
Q ss_pred cCCCCChhHHhHHhhhh-hcCCCHHHHHHHHHhcCC--CCc-----chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 039792 389 ANIESDNFVKNSLVDMY-AKCDSLTEARKVFDVMAD--RNV-----VSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPG 460 (819)
Q Consensus 389 ~g~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~--~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 460 (819)
.+-+||+..-|..-+.- .+....++|..-|+++.+ +.- -+.-.+|..+.+.+++++.++.+.+|..-
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY----- 94 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY----- 94 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-----
Confidence 34566665544433221 244578888888888764 222 23445778888888888888888887421
Q ss_pred hhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC-----CCee----ehh
Q 039792 461 LLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ-----RDIV----VWN 531 (819)
Q Consensus 461 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~----~~~ 531 (819)
+-++..+ .-+....|++++......+.+--.++++.-.+ ++.. |-+
T Consensus 95 ------IkSAVTr-------------------NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 95 ------IKSAVTR-------------------NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred ------HHHHHhc-------------------cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 0000000 01223334444444444444333333332211 2222 234
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCC----CCC-------HHHHHHHHHHHhccCChHHHHHHHHHHHH-hCCCCchhH
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQ----RPN-------EFTFAALITAASNLGSLKHGQQFHNHLIK-LGLDFDSFI 599 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~-------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 599 (819)
-|-..|...+.+.+..++++++...-- .-| ...|..-|+.|....+-.....++++.+. ..--|.+.+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 466667777777777777777754211 111 23566777788888888888888877653 222345554
Q ss_pred HHHH----HHHHHhcCCHHHHHH
Q 039792 600 TSAL----IDMYAKCGSLEDAYE 618 (819)
Q Consensus 600 ~~~l----i~~~~~~g~~~~A~~ 618 (819)
...+ ..+..+.|.+++|..
T Consensus 230 mGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HhHHHHcCCccccccchHHHHHh
Confidence 4433 234566788888764
No 385
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=43.21 E-value=3.7e+02 Score=27.19 Aligned_cols=47 Identities=13% Similarity=-0.100 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCC---------------CchHHHHHHHHHHhCC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNS---------------MWADAKQVRKKMDLDG 763 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g---------------~~~~a~~~~~~m~~~g 763 (819)
|.+.|..-++++.+... ......++ ++...| ++..|...+....+.|
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 67777777777777665 55555566 555555 5555666666555444
No 386
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=42.30 E-value=2e+02 Score=26.94 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=59.7
Q ss_pred HHhcCCHHHHHHHHhcCC------CCChHhHHHHHH-HHHhCCC--hHHHHHHHHHHHHcCCCCCc----hhHHHHHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT------WKDVACWNSMIC-TNAHHGE--PMKALLLFREMIIEGLEPNY----ITFVGVLSAC 673 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~ 673 (819)
....|++++|..-++++. +.-...|..+.. +++.++. +-+|..++.-... |..|+. +.+...+.+.
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~-~~~ps~~EL~V~~~~YilGl 117 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD-GRLPSPEELGVPPIAYILGL 117 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc-CCCCCHHHcCCCHHHHHHHH
Confidence 345566777776666554 223345555554 6777664 5566666655554 334432 2333233222
Q ss_pred --------------HccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 674 --------------SHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 674 --------------~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
.+.|++++|.+.++-|.+ +-.--+.+-...++..+-+ ..+.++...++.
T Consensus 118 ~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~l~~~LR~---K~Dvar~~lekt 181 (204)
T COG2178 118 ADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPKALVPGLRQ---KQDVARSLLEKT 181 (204)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHH---HHHHHHHHHHHH
Confidence 245788999998888876 4332222222233333433 445555555444
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=41.85 E-value=3.8e+02 Score=26.98 Aligned_cols=58 Identities=17% Similarity=0.317 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
.+.....|...|.+.+|.++.++.+. +.| +...+..++..+...|+--.+.+.++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456778899999999999999988 777 55667788888999998777776666654
No 388
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.24 E-value=6.6e+02 Score=29.60 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHH
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLEL 553 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 553 (819)
..+.+........|+.+.+..+-.-|. -|..++.-+.+.+.+++|++++..-
T Consensus 505 ~nretv~~l~~~~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 505 LNRETVYQLLASHGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred hhHHHHHHHHHHccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445555666677766655554443 3556777788888888888877653
No 389
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.73 E-value=75 Score=21.88 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=16.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCchHHHHHH
Q 039792 675 HAGLIEDGLDHFQSMAGFGIEPGMEHYASVV 705 (819)
Q Consensus 675 ~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 705 (819)
+.|..+++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3455555555555555555555444444433
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.55 E-value=2.6e+02 Score=29.79 Aligned_cols=54 Identities=7% Similarity=0.016 Sum_probs=36.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCch--hHHHHHHHHH--ccCCHHHHHHHHHHHHh
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYI--TFVGVLSACS--HAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 691 (819)
....++++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334678888888888888876 555544 3444545544 35567788888887765
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.53 E-value=2.2e+02 Score=23.83 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
-|..|+.-|..+|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888889999999998888876
No 392
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=40.51 E-value=1.8e+02 Score=29.01 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=38.3
Q ss_pred HHHHHhcCCchhHHHHHHHHHHC--CCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHh--
Q 039792 231 ITGYVKSGRSDLSLNLFNQMRET--DVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSK-- 306 (819)
Q Consensus 231 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 306 (819)
|.+++..+++.+++...-+.-+. .++|. ....-|-.|++.+......++-...+...-..+..-|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56666666666666544443321 12222 2222223344555554444444444433222223334444444433
Q ss_pred ---CCChHHHHHHH
Q 039792 307 ---CGRVKMARRLF 317 (819)
Q Consensus 307 ---~g~~~~A~~~~ 317 (819)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666555
No 393
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.28 E-value=3.2e+02 Score=28.92 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=37.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCchh----HHHHHHHHHc--cCCHHHHHHHHHHH
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPNYIT----FVGVLSACSH--AGLIEDGLDHFQSM 689 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~--~g~~~~a~~~~~~m 689 (819)
+..+...+++..|.++|+++....+.|+... +..+..+|.. .-++++|.+.++.+
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 3345677899999999999998766555433 3444444443 45678888888753
No 394
>PRK10941 hypothetical protein; Provisional
Probab=40.23 E-value=2e+02 Score=28.84 Aligned_cols=76 Identities=8% Similarity=0.011 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHh
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLL 708 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l 708 (819)
.+.+-.+|.+.++++.|+...+.+.. +.|+.. -+.--.-.|.+.|.+..|..=++.-++ ..-.|+.+.....+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 45666778888888888888888887 778754 355566667888888888777777766 55556554444444333
No 395
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.89 E-value=6.3e+02 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=18.3
Q ss_pred CeeehhhhH-----HHHHhcCCHHHHHHHHHHHH
Q 039792 526 DIVVWNAML-----LGYTQQLENEEAIKLYLELL 554 (819)
Q Consensus 526 ~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~ 554 (819)
....|..+. ..|-..|+.++|.....+..
T Consensus 571 ~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 571 SDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 344564333 34666788888888777654
No 396
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=39.83 E-value=4.1e+02 Score=26.77 Aligned_cols=52 Identities=10% Similarity=0.240 Sum_probs=27.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChHhHHHHHHHHHhCCChH
Q 039792 594 DFDSFITSALIDMYAKCGSLEDAYETFGSTT-----WKDVACWNSMICTNAHHGEPM 645 (819)
Q Consensus 594 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~ 645 (819)
.++..+...+++.+++.+++.+-.++++... ..|...|..+|..-..+|+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 3444455555555555555555555554332 235555555555555555543
No 397
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.37 E-value=2.3e+02 Score=23.66 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=45.3
Q ss_pred ChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 039792 274 FVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTR 353 (819)
Q Consensus 274 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (819)
..++|..+.+.+...+- ....+.-.-+..+.+.|++++|...=.....||+..|-+|-. .+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 44556666665555543 233333344555677888888855555566778888876654 466777777777777655
Q ss_pred CC
Q 039792 354 SG 355 (819)
Q Consensus 354 ~g 355 (819)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.82 E-value=1.1e+02 Score=33.72 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=83.3
Q ss_pred hHHHHHHHHhcCCCCeeehhhhHHH--H-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 039792 512 NKDARLVFDEMNQRDIVVWNAMLLG--Y-TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHL 588 (819)
Q Consensus 512 ~~~A~~~~~~~~~~~~~~~~~li~~--~-~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 588 (819)
.+-+..+|..|..++...|-+|=.+ | .-.|+...|...+.........-..+....|.+...+.|..-.|-.++.+.
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 4557778888888877777554322 3 345888888887776654322223344556666667777777788877777
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHH
Q 039792 589 IKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMIC 636 (819)
Q Consensus 589 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 636 (819)
.... ...+-++-++.++|.-..+++.|++.|+... .++++.-+.|..
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 7665 3366677788888988889999998887655 345555555543
No 399
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=37.12 E-value=3.8e+02 Score=28.85 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHH
Q 039792 559 RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMI 635 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 635 (819)
.|...-...-|.---..|++-.|.+-.....+.... ++...-.....+...|+++.+...+.... .....+-..++
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~ 364 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRL 364 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHH
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
......|++++|..+.+-|+...++ +..........-...|.+|++...+++.
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHH
No 400
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.86 E-value=1.4e+02 Score=29.92 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=35.9
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCcee
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRS 771 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s 771 (819)
+.+.|...++.++.++|+++.+...++...-...+.-+|.+.+-+. +.-.||.|
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A----LtisP~ns 184 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA----LTISPGNS 184 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee----eeeCCCch
Confidence 5666777777777777777777777777766666666777666533 33445555
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.46 E-value=47 Score=28.76 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=25.9
Q ss_pred HHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 039792 234 YVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSAC 269 (819)
Q Consensus 234 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 269 (819)
.-..|.-.+|..+|++|.+.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457778899999999999999875 56666554
No 402
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.41 E-value=3.7e+02 Score=25.30 Aligned_cols=89 Identities=10% Similarity=0.034 Sum_probs=61.2
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHh--HHHHHHHHHhCCChH
Q 039792 570 TAASNLGSLKHGQQFHNHLIKLGLDFD--SFITSALIDMYAKCGSLEDAYETFGSTTWKDVAC--WNSMICTNAHHGEPM 645 (819)
Q Consensus 570 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 645 (819)
..+...++++.|...++......-..+ ...--.|.......|..++|...++....++-.+ ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 445677788888877776654321111 1122235567778899999999998888765443 333456788999999
Q ss_pred HHHHHHHHHHHcC
Q 039792 646 KALLLFREMIIEG 658 (819)
Q Consensus 646 ~A~~~~~~m~~~g 658 (819)
+|..-|++.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999999865
No 403
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=36.37 E-value=5.7e+02 Score=27.42 Aligned_cols=337 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred hHHHHHHHcCCChhhHHHHHhccCC---CCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcC
Q 039792 91 NMLLRNYSKANDLDGARKLFDTMSE---RNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQL 167 (819)
Q Consensus 91 ~~ll~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 167 (819)
|-++..|...|+..+|-+...++.. .+...=.+++.+.-..-.-...+.++.+- ...|.......--.+-+.-...
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~-~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEG-REEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhh-hhhcchhhhccccCchhhcccc
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHH
Q 039792 168 GGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLF 247 (819)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 247 (819)
+++.-.+.-++..++.+.-....-+-.--+++-..-...|+.+. .+.|++ .-..+|.-|...|+..+..+.+
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-------~~~~IIqEYFlsgDt~Evi~~L 368 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-------DLTPIIQEYFLSGDTPEVIRSL 368 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-------hhHHHHHHHHhcCChHHHHHHH
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChH-------------HHH
Q 039792 248 NQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVK-------------MAR 314 (819)
Q Consensus 248 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-------------~A~ 314 (819)
+++-.-...|-..-+..-+..=.+...-+-|..++..+--.-+. +..+-+.....+-...+.. -|+
T Consensus 369 ~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fs-teDv~~~F~mLLesaedtALD~p~a~~elalFlAR 447 (645)
T KOG0403|consen 369 RDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFS-TEDVEKGFDMLLESAEDTALDIPRASQELALFLAR 447 (645)
T ss_pred HHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCC-HHHHHHHHHHHHhcchhhhccccccHHHHHHHHHH
Q ss_pred HHHhcccCC-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCC
Q 039792 315 RLFDEIEVK-NIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIES 393 (819)
Q Consensus 315 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 393 (819)
.+.+.+..| |+..+..-+..-.+....-+.-..+-.|+..| -.+++.+..-|--.....+-+.+
T Consensus 448 AViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aG--------eRllr~WGgGG~g~sVed~kdkI------- 512 (645)
T KOG0403|consen 448 AVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAG--------ERLLRVWGGGGGGWSVEDAKDKI------- 512 (645)
T ss_pred HHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcc--------cchhheecCCCCcchHHHHHHHH-------
Q ss_pred ChhHHhHHhhhhhcCCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039792 394 DNFVKNSLVDMYAKCDSLTEARKVFDVMADR---NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFV 457 (819)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 457 (819)
..|+.-|.-.|++.+|.+..+++.-| ..+.+-+++.+.-+.|+....+.++++.-..|.
T Consensus 513 -----~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 -----DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred -----HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
No 404
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.24 E-value=2.4e+02 Score=28.92 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=17.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH-----cCCCCCch-hHHHHHH
Q 039792 634 MICTNAHHGEPMKALLLFREMII-----EGLEPNYI-TFVGVLS 671 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-t~~~ll~ 671 (819)
+...+...|+.+++.+++++..+ -|+.|+.. .|..+-+
T Consensus 121 ~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 121 IARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 33444445555555555555444 34555432 3444444
No 405
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=36.17 E-value=3.9e+02 Score=31.20 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=83.4
Q ss_pred CChHHHHHHHHHHHH---cCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHH-HHHHHhhcccchhh
Q 039792 642 GEPMKALLLFREMII---EGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYA-SVVSLLGRNVWNVE 716 (819)
Q Consensus 642 g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~-~li~~l~r~~w~~~ 716 (819)
+.+++|+..+++=.- .-+.-+..+..+|-.-+-+..+..+-.+....+-. .|. |+...|- .+...|+ -+
T Consensus 547 NqyEEaL~kiEeERyEyDr~Iea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~-~S~sIyKkvik~VY~-----KE 620 (1163)
T COG5602 547 NQYEEALFKIEEERYEYDRHIEATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGL-PSKSIYKKVIKKVYD-----KE 620 (1163)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCC-ccHHHHHHHHHHHhc-----hh
Confidence 457788776655431 11222334444454445544444443333332222 232 3444554 4445555 46
Q ss_pred hHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHH----HHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCCCh
Q 039792 717 LGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQ----VRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAA 792 (819)
Q Consensus 717 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~----~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~ 792 (819)
.|.++++-+++. |. .++=+.|-.++.+...|.-+.+ +|+++.++..-|.- ++ .--.|...|+..--.
T Consensus 621 hA~eile~L~k~-P~-vt~PiVlkRLk~Kd~EWR~~kRew~kiWReIEeKN~~ksL-----D~--~g~sfK~rDKk~lst 691 (1163)
T COG5602 621 HAPEILEALLKK-PH-VTIPIVLKRLKMKDEEWRSCKREWNKIWREIEEKNYHKSL-----DH--QGVSFKSRDKKILST 691 (1163)
T ss_pred hHHHHHHHHHhC-CC-cchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHhhh-----hh--cccceeccccccchH
Confidence 788888877664 32 4566778899999999988776 44555555443321 11 112477888888888
Q ss_pred HHHHHHHHHHH
Q 039792 793 DLTYSILDNLI 803 (819)
Q Consensus 793 ~~i~~~l~~l~ 803 (819)
+.|.+..+...
T Consensus 692 k~il~eidd~~ 702 (1163)
T COG5602 692 KNILEEIDDRS 702 (1163)
T ss_pred HHHHHHhhHhh
Confidence 88888877443
No 406
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.15 E-value=4.7e+02 Score=26.45 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=6.8
Q ss_pred HHHHHHHhHhCCChH
Q 039792 297 INVLMDFYSKCGRVK 311 (819)
Q Consensus 297 ~~~li~~~~~~g~~~ 311 (819)
|.-|+.+++..|+.+
T Consensus 324 yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 324 YAPLLAAFCSQGQSE 338 (412)
T ss_pred hhHHHHHHhcCChHH
Confidence 444444444444433
No 407
>PRK10941 hypothetical protein; Provisional
Probab=36.02 E-value=62 Score=32.37 Aligned_cols=48 Identities=19% Similarity=0.002 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|.+..+.++.+.|+++.-+---+-+|++.|.|..|..=++...+
T Consensus 196 ~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 196 QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 666777778888888999888888888999999999999887775544
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.64 E-value=1.2e+02 Score=20.85 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=17.0
Q ss_pred HhcCCchhHHHHHHHHHHCCCCCChhhHHHHH
Q 039792 235 VKSGRSDLSLNLFNQMRETDVVHDKYLLSSVL 266 (819)
Q Consensus 235 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 266 (819)
.+.|-..++..++++|.+.|...+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555554444444
No 409
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.07 E-value=39 Score=29.19 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=26.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039792 537 YTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAA 572 (819)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 572 (819)
....|.-..|..+|.+|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456667799999999999999985 66666654
No 410
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.64 E-value=4.9e+02 Score=26.21 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=32.8
Q ss_pred chhhhHHHHHHHHHccCCCCchhHHHHHHHHHh----CCCchHHHHHHHHHHhCCC
Q 039792 713 WNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC----NSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 713 w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 764 (819)
|+...|...++++.+.. ++.....|+.+|.. ..+.++|...+++.-+.|.
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 34455666666665554 56777778877755 3466778888877777664
No 411
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=34.32 E-value=2.8e+02 Score=23.18 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=14.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 039792 633 SMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
.++..|...|+.++|..-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 45556666666666666666553
No 412
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.23 E-value=1.2e+02 Score=30.52 Aligned_cols=78 Identities=9% Similarity=0.027 Sum_probs=52.1
Q ss_pred CCCchh-HHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHH
Q 039792 660 EPNYIT-FVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYT 737 (819)
Q Consensus 660 ~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~ 737 (819)
.|+..+ |...+.--.+.|.+.+...+|.+... +....+.-.|.|-....-.+ |++.++.++.+++.++|++|..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a--ni~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA--NIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc--cHHHHHHHHHhhhccCCCCchHHH
Confidence 454444 33333333445566677777777776 66666666666655555444 889999999999999999998776
Q ss_pred HH
Q 039792 738 LL 739 (819)
Q Consensus 738 ~l 739 (819)
..
T Consensus 181 ey 182 (435)
T COG5191 181 EY 182 (435)
T ss_pred HH
Confidence 54
No 413
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=34.18 E-value=1.1e+02 Score=23.89 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=26.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHH
Q 039792 539 QQLENEEAIKLYLELLLSQQRPN--EFTFAALITAASNLGSLKHGQQF 584 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~ 584 (819)
...+.++|+..|....+.-..|. ..++..++.+++..|++.+...+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777776665432222 13456666666666666665543
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=33.58 E-value=1.6e+02 Score=25.22 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHh
Q 039792 242 LSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRR 288 (819)
Q Consensus 242 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (819)
+..+-++.....++.|++......|.+|.+.+|+..|.++++.+...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445556666788999999999999999999999999998877543
No 415
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.53 E-value=2.8e+02 Score=23.10 Aligned_cols=77 Identities=9% Similarity=0.107 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 577 SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
..++|..|.+.+...+-. ...+.-.-+..+.+.|++++|...=.....||...|-+|- -.+.|-.+++..-+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 455666666666555431 2222222334456677777774444455567777765553 2355666666666665544
No 416
>PRK09169 hypothetical protein; Validated
Probab=33.49 E-value=1.3e+03 Score=30.85 Aligned_cols=399 Identities=12% Similarity=0.008 Sum_probs=206.9
Q ss_pred CCcchHHHHHHHhcCCcchhhHHHHHHH----HHH---cCCCCChhHHhHHhhhhhcCCCHHHHH----HHHHhcCC---
Q 039792 358 PDDFACSSVLTSCGSVEALEQGRQVHAY----SFK---ANIESDNFVKNSLVDMYAKCDSLTEAR----KVFDVMAD--- 423 (819)
Q Consensus 358 p~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~--- 423 (819)
.|.......++++++..+-+.+...-.. +.. ..-..+..-....+++++|..+-+.+. .+-+.+..
T Consensus 286 ~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~ 365 (2316)
T PRK09169 286 LDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAG 365 (2316)
T ss_pred cCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChh
Confidence 3555566677777766554433222211 110 112334555556667777766655432 22222221
Q ss_pred ----CCcchHHHHHHHHHhcCChhH----HHHHHHHHHhC-C--CCCChhHHHHHHHHhhccCchHhHHHHHHHHHH---
Q 039792 424 ----RNVVSYNAMIEGYSKEEKLSE----ALDLFHEMRVG-F--VPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK--- 489 (819)
Q Consensus 424 ----~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-g--~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--- 489 (819)
-|..-....+.+++|-++-+. |..+...+... + -..|.--....+.+|++.+.-+.+.+....+..
T Consensus 366 l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~ 445 (2316)
T PRK09169 366 LRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLA 445 (2316)
T ss_pred hhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 234445566677777665432 23333333221 1 224566677888888887765544433322211
Q ss_pred h----CCccchhhHHHHHHHHHhcCChHH----HHHHHHhcCC-------CCeeehhhhHHHHHhcCCHHHHHH----HH
Q 039792 490 Y----GVFLDVFAGSALIDAYSKCFSNKD----ARLVFDEMNQ-------RDIVVWNAMLLGYTQQLENEEAIK----LY 550 (819)
Q Consensus 490 ~----g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~----~~ 550 (819)
. .-..+..-....+.+++|..+.+. +..+...+.. -+..-....+.++.+-++.+.+.. +.
T Consensus 446 ~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA 525 (2316)
T PRK09169 446 ADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALA 525 (2316)
T ss_pred hchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 1 123456666777888888776442 2333333321 244556667888888776654322 33
Q ss_pred HHHHHC---CCCCCHHHHHHHHHHHhccCChHHHH----HHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHH----HH
Q 039792 551 LELLLS---QQRPNEFTFAALITAASNLGSLKHGQ----QFHNHLIKL---GLDFDSFITSALIDMYAKCGSLE----DA 616 (819)
Q Consensus 551 ~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~----~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~----~A 616 (819)
..+... --.-|..-+...+.++++.++.+.+. .+...+.+. --..+..-....++++.|-+.-. .|
T Consensus 526 ~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa 605 (2316)
T PRK09169 526 DRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAA 605 (2316)
T ss_pred HHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHH
Confidence 322221 12346677888999999988754433 233332221 11235556667788888877532 22
Q ss_pred HHHHhcCC-------CCChHhHHHHHHHHHhCCChHHHHHHHHH----HHHcCCC---CCchhHHHHHHHHHccCCHHHH
Q 039792 617 YETFGSTT-------WKDVACWNSMICTNAHHGEPMKALLLFRE----MIIEGLE---PNYITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 617 ~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~---p~~~t~~~ll~a~~~~g~~~~a 682 (819)
..+..... .-|..-+...+.++++-++.+........ +...+-. -|..-+..+++++++-.+.+.+
T Consensus 606 ~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c 685 (2316)
T PRK09169 606 EALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAAC 685 (2316)
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHH
Confidence 23333322 23566777888999988876654433333 3222111 2344577888999998887765
Q ss_pred HHHHHHHHh-cC------CccCchHHHHHHHHhhcccc-hhhhHHH----HHHHHHccCC-----CCchhHHHHHHHHHh
Q 039792 683 LDHFQSMAG-FG------IEPGMEHYASVVSLLGRNVW-NVELGRY----AAEMAISIDP-----MDSGSYTLLSNTFAC 745 (819)
Q Consensus 683 ~~~~~~m~~-~g------~~p~~~~y~~li~~l~r~~w-~~~~a~~----~~~~~~~~~p-----~~~~~~~~l~~~y~~ 745 (819)
.+....+.. .+ -.-+....+..++.++| | +.+..+. ++..+.. +| -++.-.....|.+++
T Consensus 686 ~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsK--wp~~~acr~A~~~LA~rL~~-~~~l~~a~~aQ~lAnsLNaLsK 762 (2316)
T PRK09169 686 RAAALALAERLAREAGLRQAFDAQGVANALNALSK--WPEEEACRAAAEALAGRLAA-DADLRQAMNPQGLANSLNALSK 762 (2316)
T ss_pred HHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHh--ccCccHHHHHHHHHHHHHhc-ChHHHhhcCHHHHHHHHHHHHh
Confidence 555544432 11 12345677888888887 5 2222222 2332222 11 133344444555555
Q ss_pred CCCchHHHHHHHHH
Q 039792 746 NSMWADAKQVRKKM 759 (819)
Q Consensus 746 ~g~~~~a~~~~~~m 759 (819)
--+-+.+.+..-.+
T Consensus 763 wp~~~~c~~a~~~L 776 (2316)
T PRK09169 763 WPQEPACQQAALLL 776 (2316)
T ss_pred CCCCHHHHHHHHHH
Confidence 55555555544443
No 417
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.44 E-value=3.2e+02 Score=23.61 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 646 KALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
.+.++|+.|...|+--.. .-|......+...|++++|.++|+.-
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 889999999998887765 45777777888999999999998753
No 418
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.44 E-value=2.2e+02 Score=32.34 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=19.5
Q ss_pred ChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHH
Q 039792 258 DKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRL 316 (819)
Q Consensus 258 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (819)
+...-.-++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+..+.++|+......+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i 460 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRI 460 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHH
Confidence 3344444555555555555555554444332211 12233344445555555444433
No 419
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.34 E-value=72 Score=26.75 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=13.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q 039792 633 SMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~m 654 (819)
.++..|..+|+.++|...++++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4555666666777766666654
No 420
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=33.12 E-value=63 Score=20.67 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHH
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRK 757 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~ 757 (819)
..+..++..+...|++++|..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356678899999999999999944
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.74 E-value=1.1e+02 Score=28.86 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 648 LLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+..++..+ ..|+..+|..++.++...|+.++|.+...++..
T Consensus 131 ~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 131 IEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445544 678888888888888888888888888888776
No 422
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=32.54 E-value=49 Score=25.51 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhcCCcCCC
Q 039792 793 DLTYSILDNLILHIKGVGYVPNT 815 (819)
Q Consensus 793 ~~i~~~l~~l~~~~~~~~~~~~~ 815 (819)
.+|.+.+++-..+++..||.||.
T Consensus 8 i~il~~ie~~inELk~dG~ePDi 30 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDI 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----E
T ss_pred HHHHHHHHHHHHHHHhcCCCCCE
Confidence 45667777777888899999985
No 423
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.47 E-value=6.9e+02 Score=28.83 Aligned_cols=100 Identities=23% Similarity=0.333 Sum_probs=55.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 039792 537 YTQQLENEEAIKLYLELLLSQQRPNEFT---FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSL 613 (819)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 613 (819)
|...+..+.|.+.|++.-+ +.|+..+ +..|+.+..+ .++...+ +...| ..|-..++|.|.+
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~E----lq~Ig--------mkLn~LlgrKG~l 360 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLE----LQQIG--------MKLNSLLGRKGAL 360 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHH----HHHHH--------HHHHHHhhccchH
Confidence 4444556677777777655 4565533 4444443322 1222221 11222 2244567888888
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 039792 614 EDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 614 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
++-.+.|+-. + .+.+-.-.+++.+|++.-+.|.+ ++|..
T Consensus 361 eklq~YWdV~------~---y~~asVLAnd~~kaiqAae~mfK--Lk~P~ 399 (1226)
T KOG4279|consen 361 EKLQEYWDVA------T---YFEASVLANDYQKAIQAAEMMFK--LKPPV 399 (1226)
T ss_pred HHHHHHHhHH------H---hhhhhhhccCHHHHHHHHHHHhc--cCCce
Confidence 8877776432 2 23333456788889998888887 66654
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.38 E-value=54 Score=24.12 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 632 NSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
-.+|.||.+.|++++|.++.+++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466777777777777777766654
No 425
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.51 E-value=76 Score=31.90 Aligned_cols=45 Identities=27% Similarity=0.309 Sum_probs=33.7
Q ss_pred CChH-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHH
Q 039792 626 KDVA-CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL 670 (819)
Q Consensus 626 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 670 (819)
+|.. -|+..|..-.+.||+++|+++++|..+.|+.--..||..-+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3443 45788888899999999999999999988765555555433
No 426
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.23 E-value=79 Score=18.67 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHccCCCCchhHHHHHH
Q 039792 715 VELGRYAAEMAISIDPMDSGSYTLLSN 741 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p~~~~~~~~l~~ 741 (819)
.+.+..++++++...|.++..|...+.
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 456666777777777777777666553
No 427
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.42 E-value=5.6e+02 Score=25.53 Aligned_cols=86 Identities=21% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHhcCChhHHHHHHHH----HHhCCCCCChhHHHHHHHHhhccCchH-hHHHHHHHHHHh---C--CccchhhHHHHHHH
Q 039792 436 YSKEEKLSEALDLFHE----MRVGFVPPGLLTFVSLLGLSSSVFSLE-SSKQIHGLIIKY---G--VFLDVFAGSALIDA 505 (819)
Q Consensus 436 ~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~i~~~~~~~---g--~~~~~~~~~~li~~ 505 (819)
+.++|+...|-++-.- ..+.+.++|......++..+.....-+ .-..+.+.+++. | ..-++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 4445554444333322 233556666655555555444333211 233333333332 1 22367777788888
Q ss_pred HHhcCChHHHHHHHHh
Q 039792 506 YSKCFSNKDARLVFDE 521 (819)
Q Consensus 506 ~~~~g~~~~A~~~~~~ 521 (819)
|.+.|++.+|+.-|-.
T Consensus 100 ~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHTT-HHHHHHHHHT
T ss_pred HHhhccHHHHHHHHHh
Confidence 8888888888776644
No 428
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.20 E-value=2.9e+02 Score=22.08 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=27.5
Q ss_pred cCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 039792 407 KCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEA 445 (819)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 445 (819)
..|+.+.|+.+++.++ +....|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577778888888877 7777777788777776665444
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.99 E-value=6.4e+02 Score=26.07 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=20.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCC-ccC
Q 039792 669 VLSACSHAGLIEDGLDHFQSMAGFGI-EPG 697 (819)
Q Consensus 669 ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~ 697 (819)
+..-+.++|-.+.|..+++.+.+..+ .|.
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 33445678999999999999988433 454
No 430
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.96 E-value=5.3e+02 Score=25.10 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=35.0
Q ss_pred HHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 617 YETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 617 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
..+|+-...|.+.....|+..|. .+++++|.+++.++.+.|+.|...
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 34555555677777777776654 568999999999999999998654
No 431
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.70 E-value=5.9e+02 Score=25.54 Aligned_cols=156 Identities=17% Similarity=0.053 Sum_probs=88.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHhccCChHHHHHHHHHHH----HhCCCCchhHHHHH
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQQRPNEFT-------FAALITAASNLGSLKHGQQFHNHLI----KLGLDFDSFITSAL 603 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l 603 (819)
+-..+.+++++|+..+.+...+|+..|..+ ...+...+...|+...-.+...... ...-+-...+...|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 344566778888888888888877666543 4456666777777665544433222 11111234455566
Q ss_pred HHHHHh-cCCHHHHHHHHhcCC-----CCCh----HhHHHHHHHHHhCCChHHHHHHHH----HHHHcCCCCCchhHHHH
Q 039792 604 IDMYAK-CGSLEDAYETFGSTT-----WKDV----ACWNSMICTNAHHGEPMKALLLFR----EMIIEGLEPNYITFVGV 669 (819)
Q Consensus 604 i~~~~~-~g~~~~A~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~~l 669 (819)
++.+.. ...+++-.++..... ++.. ..=.-+|..+.+.|.+.+|+.+.. ++.+-.-+|+-++...+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 666543 234555555554333 1111 112347888899999999987644 44554556666654444
Q ss_pred HH-HHHccCCHHHHHHHHHHHH
Q 039792 670 LS-ACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 670 l~-a~~~~g~~~~a~~~~~~m~ 690 (819)
-+ +|-...++.++..-+....
T Consensus 171 ESKvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHHHH
Confidence 33 5666666666555444443
No 432
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.36 E-value=1.9e+02 Score=22.54 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=12.9
Q ss_pred HhCCCchHHHHHHHHHHh
Q 039792 744 ACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~ 761 (819)
...-.|++|.++.++|.+
T Consensus 50 ~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 50 GVGSQWERARRLQQKMKT 67 (79)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 344568888888888865
No 433
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.35 E-value=34 Score=34.73 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCc
Q 039792 716 ELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAG 769 (819)
Q Consensus 716 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g 769 (819)
..+++=+..+++++|+.+..|-.-..+....|.|++|...+....+.+.....+
T Consensus 165 ~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 165 NAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANS 218 (377)
T ss_pred chhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHH
Confidence 345555777889999999999999999999999999999999999888766544
No 434
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.33 E-value=5.4e+02 Score=24.99 Aligned_cols=51 Identities=10% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC--ChHhHHHHHHHHHhCCChHHHHHHHHHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTWK--DVACWNSMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 654 (819)
++..+...|+...|..++..+..+ +....+.++.. ..++.+.+|...-+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 555555566666666666655422 22222333333 4556666666554443
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=28.44 E-value=89 Score=31.44 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=30.0
Q ss_pred eHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHH
Q 039792 226 SWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSS 264 (819)
Q Consensus 226 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 264 (819)
-||..|..-++.|++++|+.++++.++.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 367888888899999999999999888887654444443
No 436
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.28 E-value=1.2e+03 Score=28.51 Aligned_cols=255 Identities=11% Similarity=-0.023 Sum_probs=135.4
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc
Q 039792 415 RKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL 494 (819)
Q Consensus 415 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 494 (819)
..+...+.++|...-..-+..+.+.+. .++...+.+... .++...-...+.++...+........+..+.+. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 344455556666666666666666654 334444444442 223333333334443332111111222222222 4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN 574 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 574 (819)
|..+-...++.+...+.- ....+...+..+|...=...+.++.+.+..+. +.... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 556656666666554321 12334455556666555555666666554322 12222 24566666666666666
Q ss_pred cCChHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHH
Q 039792 575 LGSLKH-GQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY-ETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFR 652 (819)
Q Consensus 575 ~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 652 (819)
.+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+......+|...-...+.++...+. +++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 665432 2333333333 346777788888888888765553 33444446665555666777777665 45667666
Q ss_pred HHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 653 EMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 653 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+.+ .|+...-...+.++.+.+.-..+...+....+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6664 66766666677777765434466666666654
No 437
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.18 E-value=3e+02 Score=24.48 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=44.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 549 LYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 549 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
+.+.+.+.|++++..- ..++..+...+..-.|..+++.+.+.++..+..|.-.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4455667777776543 34566666666668899999999998887777666556677766663
No 438
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.05 E-value=2.7e+02 Score=21.74 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=6.6
Q ss_pred HHHHHHHHCCCCCCc
Q 039792 346 KLFTEMTRSGWKPDD 360 (819)
Q Consensus 346 ~~~~~m~~~g~~p~~ 360 (819)
++++.+.+.|..|+.
T Consensus 40 ~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 40 EIVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHHTTTCTT-
T ss_pred HHHHHHHHhcccccc
Confidence 344444445554443
No 439
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=27.91 E-value=3.5e+02 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=14.7
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHH
Q 039792 532 AMLLGYTQQLENEEAIKLYLELL 554 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~ 554 (819)
.++..|...++.++|..-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34556666677777777666654
No 440
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=27.72 E-value=3.2e+02 Score=23.59 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 039792 547 IKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIK 590 (819)
Q Consensus 547 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 590 (819)
.+-++.+..-.+.|++......+++|.+.+++..|.++++-+..
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33445555666788888888889999999999998888887764
No 441
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.25 E-value=7.8e+02 Score=26.18 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=41.9
Q ss_pred HHHHHHHHhHhCCChHHHHHHHhcccC------CCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 039792 296 VINVLMDFYSKCGRVKMARRLFDEIEV------KNIISWTTLIGGYMQNSFDREAMKLFTEMTR 353 (819)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (819)
.+.-+.+.|..||+++.|.+.+.+... .-+..|-.+|..-...|+|........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455677889999999999999988542 1223466677777777888777777666654
No 442
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.92 E-value=7e+02 Score=25.53 Aligned_cols=80 Identities=8% Similarity=-0.029 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhCCChHHHHHHHH
Q 039792 578 LKHGQQFHNHLIKLGL----DFDSFITSALIDMYAKCGSLEDAYETFGSTT-WKDVACWNSMICTNAHHGEPMKALLLFR 652 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 652 (819)
.+.+.+.++.....+. ..++.....+.....+.|..+.-..+++... .++..-...++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4455566666555311 3355555556666666666555445544444 3345555667777777777666666666
Q ss_pred HHHHc
Q 039792 653 EMIIE 657 (819)
Q Consensus 653 ~m~~~ 657 (819)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 66653
No 443
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.98 E-value=1.6e+02 Score=23.25 Aligned_cols=60 Identities=13% Similarity=0.336 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhH
Q 039792 180 MHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLS 243 (819)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 243 (819)
+...+.+.|+ .+..-.-...+...+.+.|.++++.++.++..+|..+..++-..|...-|
T Consensus 21 v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 21 LWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4444444442 33333333444556678888888888888888888888888776654433
No 444
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.35 E-value=1.9e+02 Score=24.76 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=32.7
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 722 AEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 722 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+.+++++|+.|..-..-+.+|.+..+.+-|..+-+..++
T Consensus 57 vrslL~i~pPEPd~~~~~aKaY~EE~D~~VA~mMAr~vre 96 (165)
T COG4016 57 VRSLLDIKPPEPDFNYKYAKAYSEEKDLEVAKMMARGVRE 96 (165)
T ss_pred HHHHhCCCCCCCCcchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5788999999999888899999999888877666555554
No 445
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.30 E-value=3.6e+02 Score=21.65 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=28.5
Q ss_pred HhCCChHHHHHHHHHHHH----cCCCCC----chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 639 AHHGEPMKALLLFREMII----EGLEPN----YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+.|++.+|.+.+.+..+ .+..+. ......+.......|.+++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355666666554444433 222221 12223344456667888888877777765
No 446
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.26 E-value=8.8e+02 Score=26.14 Aligned_cols=117 Identities=20% Similarity=0.130 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHH---CCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 039792 544 EEAIKLYLELLL---SQQ-RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 544 ~~A~~~~~~m~~---~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
++...+++.... .|+ ..+......++..+ .|+...+..+++.+...+...+. +...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHH
Confidence 444555554432 233 45555555555543 68888888877776544211121 222222
Q ss_pred HhcC---CCCChHhHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCC
Q 039792 620 FGST---TWKDVACWNSMICTNAH---HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGL 678 (819)
Q Consensus 620 ~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 678 (819)
+... ..++...+..++.++.+ .++.+.|+..+.+|.+.|..|..+.-..+..++...|.
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 2221 12222334445555554 47899999999999999999987777777777666664
No 447
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=25.01 E-value=1.7e+02 Score=31.46 Aligned_cols=121 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHH-HHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL-SACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW 713 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w 713 (819)
...+...++++.|+.++.+.++ +.||...|...= .++.+.+++..|..=
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~D---------------------------- 60 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHD---------------------------- 60 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHH----------------------------
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCCChH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAAD 793 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~~ 793 (819)
+.++++++|...-.|+.-+.++.+.+++.+|...++ .+.+-.|. .|...
T Consensus 61 --------a~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~----~~~~l~Pn-------------------d~~~~ 109 (476)
T KOG0376|consen 61 --------ALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE----KVKKLAPN-------------------DPDAT 109 (476)
T ss_pred --------HHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH----HhhhcCcC-------------------cHHHH
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCC
Q 039792 794 LTYSILDNLILHIKGVGYVPNTS 816 (819)
Q Consensus 794 ~i~~~l~~l~~~~~~~~~~~~~~ 816 (819)
....+.+.+..+-+..--+|...
T Consensus 110 r~~~Ec~~~vs~~~fe~ai~~~~ 132 (476)
T KOG0376|consen 110 RKIDECNKIVSEEKFEKAILTPE 132 (476)
T ss_pred HHHHHHHHHHHHHhhhhcccCCc
No 448
>PRK11619 lytic murein transglycosylase; Provisional
Probab=24.90 E-value=1.1e+03 Score=27.23 Aligned_cols=193 Identities=7% Similarity=-0.090 Sum_probs=90.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCCC--Ce-eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQR--DI-VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
+......-+..-.+.++++.+...|..|... +. .-.-=+..++...|+.++|...|++... .. +|-.++.+
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa 384 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA 384 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH
Confidence 3344444455555777777777777777541 11 1112244555667888888888777642 12 23333322
Q ss_pred HhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhCCChHHHHH
Q 039792 572 ASNLGSL-KHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WKDVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 572 ~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
- +.|.. .-....... ....+..++ ...-+..+...|....|...+..+. ..+......+...-...|..+.++.
T Consensus 385 ~-~Lg~~~~~~~~~~~~-~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~ 460 (644)
T PRK11619 385 Q-RLGEEYPLKIDKAPK-PDSALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQ 460 (644)
T ss_pred H-HcCCCCCCCCCCCCc-hhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 11211 000000000 000000000 1122445556677777777766544 3344444444444556677777776
Q ss_pred HHHHHHHcC----CCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCch
Q 039792 650 LFREMIIEG----LEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGME 699 (819)
Q Consensus 650 ~~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 699 (819)
........+ --| ..|...+..+.+.-.++.++-+--...+.++.|+..
T Consensus 461 ~~~~~~~~~~~~~rfp--~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 461 ATIAGKLWDHLEERFP--LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HHhhchhHHHHHHhCC--cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 654432210 011 135555665555555555543322223366666643
No 449
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=24.71 E-value=9.6e+02 Score=26.40 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHH
Q 039792 428 SYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYS 507 (819)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 507 (819)
..-+++..+.++-.+.-...+-.+|..- .-+...|..+++.|... ..+.-..+++.+.+..+. |+.....|.+.|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 4455666666666666666666676653 34455666677766666 445566666666666554 5555566666666
Q ss_pred hcCChHHHHHHHHhcC
Q 039792 508 KCFSNKDARLVFDEMN 523 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~ 523 (819)
+ ++...+..+|..+.
T Consensus 144 k-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 144 K-IKKSKAAEFFGKAL 158 (711)
T ss_pred H-hchhhHHHHHHHHH
Confidence 6 66667777766543
No 450
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.91 E-value=3.7e+02 Score=21.36 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcC
Q 039792 381 QVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMA 422 (819)
Q Consensus 381 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (819)
++|+.....|+..|+.+|..+++...-.=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777777777777777766655555555555555553
No 451
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=23.83 E-value=4.8e+02 Score=22.58 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHH---HHHHhhccC-------ChhhHHHHHHHHHHhCCCCchhH
Q 039792 227 WTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSS---VLSACSMLQ-------FVGGGKQIHAHVLRRGMGMDVSV 296 (819)
Q Consensus 227 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~ 296 (819)
....++.+.+..-.-.++++..++....-.|..+.-.. -++.|.... .......++..+++.++......
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l 100 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDL 100 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHHH
Confidence 55566666777777777777777776655554443222 233333222 22223345566666776666666
Q ss_pred HHHHHHHhHhCCChHHHHHHHhcc
Q 039792 297 INVLMDFYSKCGRVKMARRLFDEI 320 (819)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~~ 320 (819)
+..+-..+.+..+..+|..+|+-+
T Consensus 101 ~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 101 FIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HhhHHHHHHHHccHHHHHHHHHHH
Confidence 677767777777777777777644
No 452
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.67 E-value=3.2e+02 Score=30.79 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=31.5
Q ss_pred HHHHHhHhCCChHHHHHHHhcccCC------CcccHHHHHHHHHcCCChh------HHHHHHHHHHHCCCCCCcchHHHH
Q 039792 299 VLMDFYSKCGRVKMARRLFDEIEVK------NIISWTTLIGGYMQNSFDR------EAMKLFTEMTRSGWKPDDFACSSV 366 (819)
Q Consensus 299 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 366 (819)
+|..+|...|++-.+.++++..... =+..+|..|+.+.++|.++ .|.++++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 3444444444444444444443311 1234555555555555442 222222222 244456666665
Q ss_pred HHHhcC
Q 039792 367 LTSCGS 372 (819)
Q Consensus 367 l~~~~~ 372 (819)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 555433
No 453
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.52 E-value=4.3e+02 Score=23.47 Aligned_cols=61 Identities=8% Similarity=0.146 Sum_probs=40.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 039792 552 ELLLSQQRPNEFTFAALITAASN-LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSL 613 (819)
Q Consensus 552 ~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 613 (819)
.+.+.|++++..-. .++..+.. .+..-.|.++++.+.+.++..+..|.-.-++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 35566777665443 33444443 345678899999998888777777766677777777744
No 454
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=23.51 E-value=1.1e+03 Score=26.71 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=9.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFD 520 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~ 520 (819)
....++++...+|-.....-+.+
T Consensus 342 ~r~~~~Dal~~~GT~~a~~~i~~ 364 (574)
T smart00638 342 ARRIFLDAVAQAGTPPALKFIKQ 364 (574)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Confidence 33444444444444443333333
No 455
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.16 E-value=4.1e+02 Score=22.96 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHH
Q 039792 645 MKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
.+..++|..|...|+--.. .-|......+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467788888888877664 346666777788888888888875
No 456
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.16 E-value=1.4e+02 Score=28.68 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
|.+.+-.+..+++++.|+....|..++...-++|+.+.|.+-+++..+..
T Consensus 10 D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 66777888899999999999999999999999999999999999887644
No 457
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=23.13 E-value=5.2e+02 Score=22.75 Aligned_cols=72 Identities=8% Similarity=0.052 Sum_probs=40.8
Q ss_pred CCCchhHHHHHHHHHccCC---HHHHHHHHHHHHhcCCccC---chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc
Q 039792 660 EPNYITFVGVLSACSHAGL---IEDGLDHFQSMAGFGIEPG---MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS 733 (819)
Q Consensus 660 ~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~g~~p~---~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~ 733 (819)
.|+..+-..+..++.++.+ +.+++.+|++..+ .-.|+ ...|-.-+..|-- -+++.+.+....+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRl--keY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRL--KEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHH--hhHHHHHHHHHHHHhhCCCcH
Confidence 5555666666777776654 5567777777765 11222 1122222222211 177788888888888888654
Q ss_pred h
Q 039792 734 G 734 (819)
Q Consensus 734 ~ 734 (819)
.
T Consensus 106 Q 106 (149)
T KOG3364|consen 106 Q 106 (149)
T ss_pred H
Confidence 3
No 458
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.82 E-value=1.7e+02 Score=24.41 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=11.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLEL 553 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m 553 (819)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666666665554
No 459
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.75 E-value=8.3e+02 Score=26.66 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=40.6
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCc
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAG 769 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g 769 (819)
++..+.+-.+.......+.+.+..+-++.++..|++.+|.+++-. .|+.+.||
T Consensus 221 ~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 221 NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 666666666667777777778888889999999999999998653 45666655
No 460
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=22.65 E-value=26 Score=36.90 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=75.5
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHHHhcCCHHHHHHHHhcCC--CCChH--
Q 039792 556 SQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSA--LIDMYAKCGSLEDAYETFGSTT--WKDVA-- 629 (819)
Q Consensus 556 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~--~~~~~-- 629 (819)
.|+.||.++|.+-..+--+......|+..+..++- |...-.. -=..-...|.-..-+++|+.+. .|+++
T Consensus 409 a~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIP-----d~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ 483 (650)
T KOG4334|consen 409 AGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIP-----DLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEM 483 (650)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHHHhcc-----hhhhcccccccccccccccchhHHHHhhcccccCchHHHH
Confidence 35677777777766666666667777777666542 2111110 0001112234455567888766 33332
Q ss_pred --------hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHH-HHHHHHHccCCHHHHHHHHHHHHhcCCccCchH
Q 039792 630 --------CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFV-GVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEH 700 (819)
Q Consensus 630 --------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 700 (819)
.|+.|..++.++-.+. -..+=.+|...|-.-+.++.. .=..+-.-..+..+|.++-.+-+-.-+.|.+.+
T Consensus 484 ctk~~~psPy~iL~~cl~Rn~g~~-d~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~t 562 (650)
T KOG4334|consen 484 CTKCAIPSPYNILRDCLSRNLGWN-DLVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLT 562 (650)
T ss_pred hhhcCCCCHHHHHHHHHHhhcCCc-ceeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhh
Confidence 3566666655442221 122223343322222222110 000011112345566666555544556788999
Q ss_pred HHHHHHHhhcc
Q 039792 701 YASVVSLLGRN 711 (819)
Q Consensus 701 y~~li~~l~r~ 711 (819)
|++++.+|||.
T Consensus 563 wGSlLriYGr~ 573 (650)
T KOG4334|consen 563 WGSLLRIYGRL 573 (650)
T ss_pred HHHHHHHhhhh
Confidence 99999999974
No 461
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.59 E-value=8.6e+02 Score=25.04 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--------CCChHhHHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHH
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTT--------WKDVACWNS-MICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVG 668 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 668 (819)
..-....-||+.|+.+.|.+.+.+.- +-|++.+.. |.--|..+.-+.+-++..+.+.++|-.-+.. -+..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 34445667888888888888776543 224443322 2233445555666677777777777665532 1222
Q ss_pred HHH-HHHccCCHHHHHHHHHHHHh
Q 039792 669 VLS-ACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 669 ll~-a~~~~g~~~~a~~~~~~m~~ 691 (819)
.-. -|....++.+|..+|-....
T Consensus 186 Y~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHcc
Confidence 222 24455677777777766554
No 462
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=22.53 E-value=1.5e+03 Score=27.73 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHh
Q 039792 631 WNSMICTNAHHG--EPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLL 708 (819)
Q Consensus 631 ~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l 708 (819)
...++.+|.+.+ ++++|+.+..++.+. .....++|++++-- +.+-...|..-+.+|
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-----------------~~~~ae~alkyl~f-----LvDvn~Ly~~ALG~Y 872 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE-----------------DPESAEEALKYLCF-----LVDVNKLYDVALGTY 872 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc-----------------ChHHHHHHHhHhee-----eccHHHHHHHHhhhc
Confidence 356777777776 777777777777763 11122333333211 122234455555555
Q ss_pred hcccchhhhHHHHHHHHHccCCCCchhHHH----H------HHHHHhCCCchHHHHHHHH
Q 039792 709 GRNVWNVELGRYAAEMAISIDPMDSGSYTL----L------SNTFACNSMWADAKQVRKK 758 (819)
Q Consensus 709 ~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~----l------~~~y~~~g~~~~a~~~~~~ 758 (819)
|++++..++++. .+||+.--++.. | -.|=...|+|++|.+-+.+
T Consensus 873 -----Dl~Lal~VAq~S-QkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 873 -----DLELALMVAQQS-QKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSA 926 (928)
T ss_pred -----CHHHHHHHHHHh-ccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHh
Confidence 899999999887 346653222221 1 1122346888888876654
No 463
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=22.01 E-value=2.8e+02 Score=27.91 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=16.5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCc
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
..+.|+.++|..+|+.... +.|+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAla--laP~~ 149 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA--LAPTN 149 (472)
T ss_pred HHhccchHHHHHHHHHHHh--cCCCC
Confidence 3456777777777777776 66654
No 464
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=21.83 E-value=1.5e+03 Score=27.57 Aligned_cols=255 Identities=7% Similarity=-0.111 Sum_probs=135.4
Q ss_pred HHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCC
Q 039792 213 KFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGM 292 (819)
Q Consensus 213 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 292 (819)
..+.+.+..+|...-..-+..+.+.+. +++...+...... +|...-...+.++...+........+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 344455556676666666777777665 3455555555432 23333334444444433221122233333332 5
Q ss_pred chhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcC
Q 039792 293 DVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGS 372 (819)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 372 (819)
|..+....+..+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...=.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 666666666666654322 12344555566666555566666666554432 12222 12444444445555555
Q ss_pred Ccchhh-HHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHH-HHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 039792 373 VEALEQ-GRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEAR-KVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFH 450 (819)
Q Consensus 373 ~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 450 (819)
.+..+. +...+..+. -.+|..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. +++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll---~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALT---GDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHh---cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 554332 223333332 2456777788888888888765543 34455555665555666777776665 45666666
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHH
Q 039792 451 EMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK 489 (819)
Q Consensus 451 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 489 (819)
.+.+ .|+...-...+.++........+...+..+.+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6653 45666666677777765333445555554444
No 465
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.53 E-value=5e+02 Score=25.56 Aligned_cols=57 Identities=23% Similarity=0.127 Sum_probs=35.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH----cCCC-CCchhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 633 SMICTNAHHGEPMKALLLFREMII----EGLE-PNYITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
.|..-|...|++++|+++|+.+.. +|.. +...+...+..+..+.|+.++...+.-+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355667777777777777777642 2221 23345566666777777777776654443
No 466
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.33 E-value=1.2e+03 Score=26.10 Aligned_cols=90 Identities=12% Similarity=0.196 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC--ChHhH---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTTWK--DVACW---NSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH 675 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 675 (819)
..|+.-|.+.+++++|..++..|.-. ....| +.+.+...+..-..+....++.++..=..|....-......|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 34677899999999999999888722 22333 33344444444455555566666554344443322222333332
Q ss_pred cCCHHHHHHHHHHHHh
Q 039792 676 AGLIEDGLDHFQSMAG 691 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~ 691 (819)
-=.+-|+++|..|..
T Consensus 492 -~V~~~aRRfFhhLLR 506 (545)
T PF11768_consen 492 -PVSDLARRFFHHLLR 506 (545)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 122446667766664
No 467
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=21.22 E-value=5.1e+02 Score=22.38 Aligned_cols=58 Identities=16% Similarity=0.026 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChHhHH-HHHHHHHhCCChHHHHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT-WKDVACWN-SMICTNAHHGEPMKALLLFRE 653 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~-~li~~~~~~g~~~~A~~~~~~ 653 (819)
-..+..++..++.-+|..++|.++++... .++-...| .++..|....+.++..++-++
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455666777777777777777777666 33333333 366777777666666555444
No 468
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.07 E-value=1.4e+03 Score=27.06 Aligned_cols=177 Identities=11% Similarity=0.019 Sum_probs=89.1
Q ss_pred HHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHH
Q 039792 465 VSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENE 544 (819)
Q Consensus 465 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 544 (819)
.++-+.+...|+.+....+-..+.+ |..++.-+...+.+++|.+++..-..+... -.+--.+ ....+.
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~--yk~ap~L-i~~~p~ 575 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELF--YKYAPEL-ITHSPK 575 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhH--HHhhhHH-HhcCcH
Confidence 3344445556666666555544433 467888889999999999998876433221 1111111 122334
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH--
Q 039792 545 EAIKLYLELLLSQQRPNEFTFAALITAASNLG---SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET-- 619 (819)
Q Consensus 545 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-- 619 (819)
+....+..+.+. -...-...++.-+.+.+ ....+...++.....-...++..+|.++.+|++..+-+.-..+
T Consensus 576 ~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~ 652 (911)
T KOG2034|consen 576 ETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEI 652 (911)
T ss_pred HHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHH
Confidence 444444433322 22223344455555443 2333444444444433445888999999999876543333222
Q ss_pred HhcCCCCChHhHHHHHHHHHhCCC------hHHHHHHHHHHHH
Q 039792 620 FGSTTWKDVACWNSMICTNAHHGE------PMKALLLFREMII 656 (819)
Q Consensus 620 ~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~ 656 (819)
...+......-...-+..|.+.+. ..-++++|.++++
T Consensus 653 ~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVd 695 (911)
T KOG2034|consen 653 IKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVD 695 (911)
T ss_pred HhhccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHH
Confidence 222222222222344455555543 3344455555554
No 469
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.82 E-value=7.8e+02 Score=23.89 Aligned_cols=72 Identities=8% Similarity=-0.042 Sum_probs=36.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-hHhHHHHHHHHHhCC
Q 039792 568 LITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKD-VACWNSMICTNAHHG 642 (819)
Q Consensus 568 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g 642 (819)
++.++...|+.+.|..++....... .+......++.. ..+|.+.+|..+-+....+. ...|..++..+....
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4555555666666666655432111 122222333333 55577777777666655432 345666665555443
No 470
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.51 E-value=1.5e+03 Score=27.01 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=82.2
Q ss_pred HHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHH
Q 039792 302 DFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQ 381 (819)
Q Consensus 302 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 381 (819)
.....||+++.|++.-..+.++ .+|..|.....+.|+.+-|.-.|++.+.- +..+| .|.-.|+.++..+
T Consensus 651 ~LaLe~gnle~ale~akkldd~--d~w~rLge~Al~qgn~~IaEm~yQ~~knf----ekLsf-----LYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLDDK--DVWERLGEEALRQGNHQIAEMCYQRTKNF----EKLSF-----LYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcCcH--HHHHHHHHHHHHhcchHHHHHHHHHhhhh----hheeE-----EEEEeCCHHHHHH
Confidence 3456789999999888776655 57999999999999999998888887641 22222 2334566666555
Q ss_pred HHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039792 382 VHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGF 456 (819)
Q Consensus 382 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 456 (819)
+...+.... |... .....+| .|++++-.+++..-...+.. |- .-..+|.-++|.++.++....+
T Consensus 720 m~~iae~r~---D~~~-~~qnalY--l~dv~ervkIl~n~g~~~la-yl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 720 MMKIAEIRN---DATG-QFQNALY--LGDVKERVKILENGGQLPLA-YL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHhhh---hhHH-HHHHHHH--hccHHHHHHHHHhcCcccHH-HH----HHhhcCcHHHHHHHHHhhcccc
Confidence 544443221 2111 1111122 47888888888766543321 11 1234677888999988886543
No 471
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.24 E-value=1.4e+02 Score=22.99 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=28.0
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG 677 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 677 (819)
...|+.+.+.+++++..+.|..|..+....+.-+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 456888899999999998888887776666665555544
No 472
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=20.19 E-value=2.7e+02 Score=22.33 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=26.4
Q ss_pred HHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcC
Q 039792 203 YAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSG 238 (819)
Q Consensus 203 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 238 (819)
.+..-+.+.+.++++.++.++..+|..+..++-..|
T Consensus 44 ~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 44 MAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred HcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 344456778888888888888888888888876544
No 473
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=20.00 E-value=5.4e+02 Score=21.69 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=55.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccch
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWN 714 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~ 714 (819)
..+...|+.-+|+++.+++.. ..++.. .| ++ +..+|. +|......--.|+... . -
T Consensus 4 ~~~~~rGnhiKAL~iied~i~--~h~~~~~~~--~l--h~~QG~------if~~lA~~ten~d~k~-~-----------y 59 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLIS--RHGEDESSW--LL--HRLQGT------IFYKLAKKTENPDVKF-R-----------Y 59 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHH--HccCCCchH--HH--HHHHhH------HHHHHHHhccCchHHH-H-----------H
Confidence 456778888888888888876 333322 22 11 111221 2222222112344321 1 1
Q ss_pred hhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 039792 715 VELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRK 757 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 757 (819)
+-.+...+.++..+.|..+.....|++=+...--|+++..--+
T Consensus 60 Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 60 LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2235567888899999888888888877666666776665544
Done!