Query 039792
Match_columns 819
No_of_seqs 793 out of 4891
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 23:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.2E-40 2.1E-44 375.9 38.1 497 203-745 63-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5E-39 1.7E-43 368.3 28.4 495 96-673 62-594 (597)
3 4g26_A Pentatricopeptide repea 99.9 5.3E-27 1.8E-31 256.6 20.4 182 529-710 28-222 (501)
4 4g26_A Pentatricopeptide repea 99.9 9.9E-27 3.4E-31 254.4 19.2 210 445-676 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-22 4.1E-27 218.5 37.7 371 332-748 6-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.9E-22 6.5E-27 217.0 36.6 349 405-761 9-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.2E-21 7.4E-26 217.3 30.0 248 509-762 202-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.3E-19 4.3E-24 202.9 31.9 434 226-691 8-477 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 8E-20 2.7E-24 200.8 29.6 307 394-742 25-372 (450)
10 3fp2_A TPR repeat-containing p 99.9 9.1E-20 3.1E-24 205.3 29.1 247 510-762 216-491 (537)
11 3fp2_A TPR repeat-containing p 99.8 3.5E-18 1.2E-22 192.3 35.3 425 225-691 26-490 (537)
12 2y4t_A DNAJ homolog subfamily 99.8 8.5E-19 2.9E-23 192.5 29.5 296 425-762 25-358 (450)
13 1xi4_A Clathrin heavy chain; a 99.8 7E-15 2.4E-19 169.5 54.6 629 72-755 593-1377(1630)
14 3ieg_A DNAJ homolog subfamily 99.8 2.7E-16 9.1E-21 166.5 32.6 296 427-761 4-334 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 2.1E-13 7.2E-18 157.4 56.2 203 395-624 1105-1307(1630)
16 3ieg_A DNAJ homolog subfamily 99.7 1.3E-15 4.4E-20 161.3 30.2 324 396-746 4-353 (359)
17 1b89_A Protein (clathrin heavy 99.7 4.8E-16 1.6E-20 161.4 25.9 345 98-521 14-368 (449)
18 1b89_A Protein (clathrin heavy 99.7 1.7E-16 5.8E-21 164.8 21.9 222 204-454 14-235 (449)
19 3hym_B Cell division cycle pro 99.7 2.3E-15 7.9E-20 157.3 27.1 260 495-759 21-296 (330)
20 3hym_B Cell division cycle pro 99.7 3.5E-15 1.2E-19 155.8 28.5 286 424-749 20-321 (330)
21 4g1t_A Interferon-induced prot 99.7 7E-15 2.4E-19 162.3 29.0 217 541-773 227-470 (472)
22 2xm6_A Protein corresponding t 99.7 1.4E-13 4.7E-18 152.4 38.6 383 293-731 38-470 (490)
23 1fch_A Peroxisomal targeting s 99.7 8.6E-16 2.9E-20 163.4 19.0 292 405-758 35-355 (368)
24 3mkr_A Coatomer subunit epsilo 99.7 6.9E-14 2.3E-18 142.5 29.9 248 504-761 7-263 (291)
25 2ooe_A Cleavage stimulation fa 99.7 2.4E-13 8.3E-18 152.1 36.7 209 479-691 256-491 (530)
26 3spa_A Mtrpol, DNA-directed RN 99.7 8E-17 2.7E-21 179.9 7.7 149 191-339 125-286 (1134)
27 2ooe_A Cleavage stimulation fa 99.6 2.7E-13 9.3E-18 151.7 35.4 176 580-762 256-454 (530)
28 3spa_A Mtrpol, DNA-directed RN 99.6 3.1E-16 1.1E-20 175.2 11.0 147 593-747 123-286 (1134)
29 1fch_A Peroxisomal targeting s 99.6 1.6E-14 5.5E-19 153.5 23.8 300 369-689 34-356 (368)
30 2xm6_A Protein corresponding t 99.6 1E-12 3.6E-17 145.3 38.6 349 395-764 39-434 (490)
31 3mkr_A Coatomer subunit epsilo 99.6 3.5E-14 1.2E-18 144.7 22.3 247 408-665 12-270 (291)
32 4eqf_A PEX5-related protein; a 99.6 1.5E-14 5.1E-19 153.7 20.4 258 425-687 64-351 (365)
33 4eqf_A PEX5-related protein; a 99.6 1.5E-14 5.3E-19 153.6 19.2 256 462-758 66-352 (365)
34 3cv0_A Peroxisome targeting si 99.6 2.8E-14 9.7E-19 148.7 19.2 257 497-759 22-312 (327)
35 3cv0_A Peroxisome targeting si 99.6 1.6E-13 5.5E-18 143.0 21.8 256 429-690 24-313 (327)
36 2pl2_A Hypothetical conserved 99.5 2E-13 6.7E-18 132.8 17.2 191 563-759 6-211 (217)
37 3u4t_A TPR repeat-containing p 99.5 2.6E-12 8.8E-17 129.9 23.5 246 498-747 5-269 (272)
38 3uq3_A Heat shock protein STI1 99.5 1.6E-12 5.5E-17 130.0 20.8 221 529-762 7-236 (258)
39 4g1t_A Interferon-induced prot 99.4 4.4E-11 1.5E-15 131.7 30.2 364 325-740 51-471 (472)
40 3uq3_A Heat shock protein STI1 99.4 9.7E-12 3.3E-16 124.3 20.6 223 428-691 7-235 (258)
41 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.3E-11 4.5E-16 124.8 20.6 219 538-762 16-244 (275)
42 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.1E-12 2.4E-16 126.8 16.8 221 528-756 44-269 (275)
43 1ouv_A Conserved hypothetical 99.4 1.6E-10 5.4E-15 116.8 26.6 221 529-764 8-253 (273)
44 3e4b_A ALGK; tetratricopeptide 99.4 7.5E-11 2.6E-15 128.3 25.6 367 371-761 14-420 (452)
45 2h6f_A Protein farnesyltransfe 99.4 2.6E-11 8.7E-16 127.8 21.0 244 496-746 97-366 (382)
46 2ho1_A Type 4 fimbrial biogene 99.4 5.3E-11 1.8E-15 118.6 22.5 195 527-761 37-237 (252)
47 2q7f_A YRRB protein; TPR, prot 99.4 1.8E-11 6.2E-16 121.2 18.0 211 527-743 23-237 (243)
48 3e4b_A ALGK; tetratricopeptide 99.4 6.4E-11 2.2E-15 128.9 23.8 377 269-730 13-423 (452)
49 2pl2_A Hypothetical conserved 99.3 2.3E-11 7.9E-16 118.0 17.4 193 494-690 3-212 (217)
50 2vq2_A PILW, putative fimbrial 99.3 1.5E-10 5.3E-15 112.7 22.8 159 529-691 10-175 (225)
51 2h6f_A Protein farnesyltransfe 99.3 3.5E-11 1.2E-15 126.7 19.1 225 528-759 98-344 (382)
52 2ho1_A Type 4 fimbrial biogene 99.3 1.8E-10 6.1E-15 114.8 23.0 193 496-691 37-237 (252)
53 3u4t_A TPR repeat-containing p 99.3 8.7E-11 3E-15 118.6 20.2 229 528-762 4-250 (272)
54 2vq2_A PILW, putative fimbrial 99.3 1.8E-10 6.3E-15 112.2 21.9 199 561-762 7-211 (225)
55 2q7f_A YRRB protein; TPR, prot 99.3 5.1E-11 1.8E-15 117.9 17.9 198 560-762 21-222 (243)
56 1ouv_A Conserved hypothetical 99.3 5.9E-10 2E-14 112.5 24.6 226 495-733 5-256 (273)
57 3vtx_A MAMA; tetratricopeptide 99.3 3.5E-10 1.2E-14 106.4 20.1 162 596-762 4-170 (184)
58 4a1s_A PINS, partner of inscut 99.3 1.9E-11 6.5E-16 131.9 12.6 229 530-761 89-371 (411)
59 4abn_A Tetratricopeptide repea 99.3 8E-11 2.7E-15 129.0 17.5 209 542-757 83-316 (474)
60 3nf1_A KLC 1, kinesin light ch 99.2 3.4E-11 1.2E-15 124.1 13.0 233 529-761 29-306 (311)
61 3sf4_A G-protein-signaling mod 99.2 6.6E-11 2.3E-15 127.2 14.9 295 426-750 9-364 (406)
62 2ond_A Cleavage stimulation fa 99.2 9.1E-10 3.1E-14 113.3 22.1 210 513-740 81-304 (308)
63 4e6h_A MRNA 3'-END-processing 99.2 4.1E-08 1.4E-12 110.4 36.3 214 495-710 342-586 (679)
64 3ro2_A PINS homolog, G-protein 99.2 7.3E-11 2.5E-15 123.0 12.3 132 630-762 185-332 (338)
65 3sf4_A G-protein-signaling mod 99.2 1E-10 3.5E-15 125.8 13.6 260 501-761 14-335 (406)
66 4a1s_A PINS, partner of inscut 99.2 2.1E-10 7.1E-15 123.7 15.0 195 497-691 127-371 (411)
67 4i17_A Hypothetical protein; T 99.2 3.3E-09 1.1E-13 103.6 21.7 208 526-745 6-226 (228)
68 4gyw_A UDP-N-acetylglucosamine 99.2 7.7E-10 2.6E-14 126.0 19.2 160 597-761 9-173 (723)
69 3vtx_A MAMA; tetratricopeptide 99.1 2.4E-09 8.3E-14 100.6 19.1 160 528-691 6-169 (184)
70 3ro2_A PINS homolog, G-protein 99.1 5.1E-10 1.7E-14 116.5 15.6 196 496-691 83-331 (338)
71 2ond_A Cleavage stimulation fa 99.1 5.6E-09 1.9E-13 107.4 22.8 216 513-733 33-275 (308)
72 3ulq_A Response regulator aspa 99.1 6.3E-10 2.2E-14 118.6 15.5 227 533-761 109-367 (383)
73 3as5_A MAMA; tetratricopeptide 99.1 6.1E-09 2.1E-13 97.6 19.7 162 597-762 8-173 (186)
74 4e6h_A MRNA 3'-END-processing 99.1 1.3E-07 4.3E-12 106.4 33.1 456 239-735 47-577 (679)
75 4abn_A Tetratricopeptide repea 99.1 1.2E-09 4E-14 119.7 15.1 190 495-689 101-318 (474)
76 3ulq_A Response regulator aspa 99.0 8.3E-09 2.8E-13 109.9 20.4 51 402-452 110-169 (383)
77 3edt_B KLC 2, kinesin light ch 99.0 1.2E-09 4E-14 110.6 12.3 201 561-761 42-280 (283)
78 3nf1_A KLC 1, kinesin light ch 99.0 1.6E-09 5.5E-14 111.4 13.3 159 531-691 115-306 (311)
79 3as5_A MAMA; tetratricopeptide 99.0 1.5E-08 5.3E-13 94.8 17.4 154 534-691 15-172 (186)
80 4i17_A Hypothetical protein; T 98.9 1.2E-08 4.1E-13 99.6 15.6 191 560-762 5-209 (228)
81 4gyw_A UDP-N-acetylglucosamine 98.9 1.7E-08 5.9E-13 114.9 18.0 159 528-691 10-173 (723)
82 1hz4_A MALT regulatory protein 98.9 2.2E-07 7.5E-12 98.4 25.2 193 499-691 96-321 (373)
83 3q15_A PSP28, response regulat 98.9 1.1E-07 3.8E-12 100.9 22.3 226 534-761 108-364 (378)
84 3q15_A PSP28, response regulat 98.9 1.1E-08 3.6E-13 108.8 13.2 190 498-691 143-364 (378)
85 1hz4_A MALT regulatory protein 98.8 1.7E-07 5.8E-12 99.2 21.3 225 501-761 58-321 (373)
86 1qqe_A Vesicular transport pro 98.8 8.2E-08 2.8E-12 97.7 17.3 209 511-759 32-266 (292)
87 4ga2_A E3 SUMO-protein ligase 98.8 1.3E-08 4.5E-13 91.7 9.4 141 603-748 3-149 (150)
88 3qky_A Outer membrane assembly 98.8 2E-07 6.9E-12 93.0 18.3 185 598-808 16-247 (261)
89 1qqe_A Vesicular transport pro 98.8 2E-07 7E-12 94.7 18.5 127 444-590 3-146 (292)
90 3edt_B KLC 2, kinesin light ch 98.8 8.8E-08 3E-12 96.6 15.7 197 495-691 42-280 (283)
91 2fo7_A Synthetic consensus TPR 98.7 2.3E-07 8E-12 81.2 15.1 127 530-691 4-131 (136)
92 2fo7_A Synthetic consensus TPR 98.7 2.5E-07 8.7E-12 81.0 14.6 129 630-762 3-132 (136)
93 3qou_A Protein YBBN; thioredox 98.7 5.4E-07 1.9E-11 91.2 18.8 163 559-760 114-282 (287)
94 2yhc_A BAMD, UPF0169 lipoprote 98.7 5E-07 1.7E-11 87.8 17.7 181 564-765 6-216 (225)
95 3qky_A Outer membrane assembly 98.7 2.7E-07 9.2E-12 92.1 16.0 199 527-752 15-251 (261)
96 3dra_A Protein farnesyltransfe 98.7 2.9E-06 1E-10 85.4 22.3 213 541-761 47-286 (306)
97 3mv2_B Coatomer subunit epsilo 98.6 4.4E-07 1.5E-11 90.4 15.4 186 546-737 85-291 (310)
98 2pzi_A Probable serine/threoni 98.6 9.6E-08 3.3E-12 109.4 11.8 194 538-738 402-612 (681)
99 2r5s_A Uncharacterized protein 98.6 1E-06 3.6E-11 81.7 15.3 152 570-760 14-171 (176)
100 3rjv_A Putative SEL1 repeat pr 98.6 1.5E-06 5E-11 83.5 16.7 176 581-764 5-199 (212)
101 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2E-06 6.7E-11 82.6 17.3 142 599-763 8-151 (213)
102 2uy1_A Cleavage stimulation fa 98.5 4.1E-05 1.4E-09 83.4 29.1 367 236-656 6-412 (493)
103 3gyz_A Chaperone protein IPGC; 98.5 4.3E-07 1.5E-11 81.3 11.0 122 599-762 11-133 (151)
104 2c2l_A CHIP, carboxy terminus 98.5 4.8E-07 1.7E-11 91.2 12.8 192 561-762 3-199 (281)
105 3mv2_B Coatomer subunit epsilo 98.5 1.2E-06 4.2E-11 87.1 15.1 233 508-762 25-282 (310)
106 3urz_A Uncharacterized protein 98.5 7.3E-07 2.5E-11 85.3 12.5 134 601-742 58-199 (208)
107 2pzi_A Probable serine/threoni 98.5 7.3E-07 2.5E-11 102.1 14.3 167 507-678 402-583 (681)
108 2vsy_A XCC0866; transferase, g 98.5 1.2E-06 4.1E-11 98.5 15.5 161 575-740 2-169 (568)
109 3rjv_A Putative SEL1 repeat pr 98.5 4.7E-06 1.6E-10 79.9 17.5 162 526-696 17-201 (212)
110 2yhc_A BAMD, UPF0169 lipoprote 98.5 4.6E-06 1.6E-10 80.9 17.5 178 498-692 6-213 (225)
111 3qou_A Protein YBBN; thioredox 98.5 1.1E-06 3.6E-11 89.0 13.0 141 616-762 105-248 (287)
112 3urz_A Uncharacterized protein 98.4 1.7E-06 6E-11 82.7 13.3 126 533-662 60-189 (208)
113 2vsy_A XCC0866; transferase, g 98.4 1.9E-06 6.5E-11 96.9 15.4 149 540-692 2-157 (568)
114 2ifu_A Gamma-SNAP; membrane fu 98.4 2.9E-05 9.8E-10 79.3 22.7 92 563-655 117-222 (307)
115 4ga2_A E3 SUMO-protein ligase 98.4 4.5E-07 1.5E-11 81.6 7.7 135 538-677 8-148 (150)
116 3u3w_A Transcriptional activat 98.4 2E-05 6.8E-10 79.9 21.0 158 603-761 81-265 (293)
117 2r5s_A Uncharacterized protein 98.4 2.8E-06 9.5E-11 78.7 13.1 153 499-654 9-170 (176)
118 2ifu_A Gamma-SNAP; membrane fu 98.4 2E-06 6.9E-11 88.0 13.0 219 509-754 4-253 (307)
119 4gco_A Protein STI-1; structur 98.4 3E-06 1E-10 73.4 12.1 106 632-742 17-124 (126)
120 2uy1_A Cleavage stimulation fa 98.3 0.00016 5.4E-09 78.8 27.4 195 413-623 197-410 (493)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.3 9.5E-06 3.2E-10 77.7 15.5 122 535-663 14-154 (213)
122 2vgx_A Chaperone SYCD; alterna 98.3 1.6E-06 5.6E-11 77.6 8.3 97 627-761 20-117 (148)
123 3q7a_A Farnesyltransferase alp 98.3 6.1E-05 2.1E-09 76.5 20.1 219 538-761 65-330 (349)
124 3gyz_A Chaperone protein IPGC; 98.3 6.9E-06 2.4E-10 73.4 11.6 93 597-691 36-132 (151)
125 1p5q_A FKBP52, FK506-binding p 98.2 6.5E-06 2.2E-10 85.2 12.8 126 630-760 149-292 (336)
126 2fbn_A 70 kDa peptidylprolyl i 98.2 1.8E-06 6.2E-11 81.8 7.6 156 603-763 10-187 (198)
127 2vgx_A Chaperone SYCD; alterna 98.2 3.7E-06 1.3E-10 75.2 9.2 100 596-697 20-124 (148)
128 3dra_A Protein farnesyltransfe 98.2 5.5E-05 1.9E-09 76.1 18.4 225 512-741 49-301 (306)
129 1a17_A Serine/threonine protei 98.2 2E-05 6.7E-10 71.8 13.8 128 630-761 15-145 (166)
130 1na0_A Designed protein CTPR3; 98.2 2.4E-05 8.3E-10 66.9 13.5 115 629-747 10-125 (125)
131 2lni_A Stress-induced-phosphop 98.2 1.8E-05 6E-10 68.9 12.7 118 627-748 15-133 (133)
132 4gco_A Protein STI-1; structur 98.2 2.5E-05 8.5E-10 67.5 13.3 88 602-691 18-109 (126)
133 3gw4_A Uncharacterized protein 98.2 1.2E-05 4E-10 76.3 12.2 151 574-761 4-175 (203)
134 3u3w_A Transcriptional activat 98.2 8.2E-05 2.8E-09 75.3 19.2 159 533-691 81-265 (293)
135 2qfc_A PLCR protein; TPR, HTH, 98.2 4.4E-05 1.5E-09 77.3 16.9 159 533-691 81-265 (293)
136 2vyi_A SGTA protein; chaperone 98.2 2.4E-05 8.1E-10 67.6 12.9 117 629-750 13-131 (131)
137 2e2e_A Formate-dependent nitri 98.1 1.8E-05 6.2E-10 73.2 12.5 115 574-691 22-143 (177)
138 2xcb_A PCRH, regulatory protei 98.1 1.9E-05 6.5E-10 69.9 12.0 95 629-761 19-114 (142)
139 1a17_A Serine/threonine protei 98.1 3.7E-05 1.3E-09 69.9 14.3 124 565-691 16-145 (166)
140 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00016 5.4E-09 73.2 20.3 167 564-760 77-264 (293)
141 3upv_A Heat shock protein STI1 98.1 2E-05 7E-10 68.0 11.7 95 629-761 5-100 (126)
142 1wao_1 Serine/threonine protei 98.1 1.4E-05 4.9E-10 86.9 12.9 114 571-687 15-134 (477)
143 1na0_A Designed protein CTPR3; 98.1 5.1E-05 1.7E-09 64.8 13.6 91 565-656 12-105 (125)
144 2e2e_A Formate-dependent nitri 98.1 2E-05 6.8E-10 72.9 11.5 130 538-671 21-156 (177)
145 1hxi_A PEX5, peroxisome target 98.1 1.8E-05 6.2E-10 67.8 9.8 95 630-762 19-114 (121)
146 4f3v_A ESX-1 secretion system 98.0 7.8E-05 2.7E-09 73.1 15.0 130 602-739 107-247 (282)
147 3sz7_A HSC70 cochaperone (SGT) 98.0 3.2E-05 1.1E-09 70.5 11.7 108 628-740 11-120 (164)
148 2kck_A TPR repeat; tetratricop 98.0 4.2E-05 1.4E-09 63.9 11.5 98 628-763 6-107 (112)
149 3gw4_A Uncharacterized protein 98.0 3.4E-05 1.1E-09 73.0 12.0 128 564-691 28-175 (203)
150 3q49_B STIP1 homology and U bo 98.0 6.2E-05 2.1E-09 65.9 12.7 99 626-762 7-106 (137)
151 2c2l_A CHIP, carboxy terminus 98.0 5.4E-06 1.8E-10 83.5 6.1 189 497-691 5-198 (281)
152 2hr2_A Hypothetical protein; a 98.0 4.1E-05 1.4E-09 67.7 10.8 101 630-761 13-130 (159)
153 2lni_A Stress-induced-phosphop 98.0 6.6E-05 2.3E-09 65.1 12.1 90 566-656 20-112 (133)
154 1p5q_A FKBP52, FK506-binding p 98.0 6.2E-05 2.1E-09 77.8 13.6 124 565-690 150-292 (336)
155 2vyi_A SGTA protein; chaperone 98.0 6.8E-05 2.3E-09 64.7 11.9 110 565-677 15-128 (131)
156 4gcn_A Protein STI-1; structur 97.9 4.5E-05 1.5E-09 65.9 10.2 90 600-691 11-111 (127)
157 2xcb_A PCRH, regulatory protei 97.9 8.4E-05 2.9E-09 65.7 11.9 92 598-691 19-114 (142)
158 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00011 3.6E-09 66.9 12.7 94 596-691 10-107 (164)
159 3upv_A Heat shock protein STI1 97.9 0.00011 3.6E-09 63.4 11.8 90 600-691 7-100 (126)
160 4f3v_A ESX-1 secretion system 97.9 6.9E-05 2.4E-09 73.5 11.6 137 567-707 107-250 (282)
161 3rkv_A Putative peptidylprolyl 97.9 0.00013 4.5E-09 66.1 12.8 96 630-761 13-125 (162)
162 2dba_A Smooth muscle cell asso 97.9 0.00017 5.8E-09 63.9 13.2 112 627-743 27-143 (148)
163 3dss_A Geranylgeranyl transfer 97.9 0.0017 5.9E-08 65.6 21.8 77 579-656 91-173 (331)
164 3dss_A Geranylgeranyl transfer 97.9 0.0012 4E-08 66.8 20.3 229 508-743 41-319 (331)
165 1dce_A Protein (RAB geranylger 97.9 0.00035 1.2E-08 77.4 17.9 172 577-751 44-244 (567)
166 1elw_A TPR1-domain of HOP; HOP 97.9 0.00024 8.1E-09 59.8 13.2 108 630-742 6-115 (118)
167 2kck_A TPR repeat; tetratricop 97.8 0.0001 3.4E-09 61.5 10.3 94 596-691 5-105 (112)
168 1elw_A TPR1-domain of HOP; HOP 97.8 0.00033 1.1E-08 58.9 13.2 89 601-691 8-100 (118)
169 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00011 3.6E-09 79.7 12.4 127 630-761 270-414 (457)
170 4gcn_A Protein STI-1; structur 97.8 0.00015 5.2E-09 62.5 11.1 99 566-667 12-120 (127)
171 3ro3_A PINS homolog, G-protein 97.8 7.8E-05 2.7E-09 67.1 9.2 135 597-761 9-157 (164)
172 3q49_B STIP1 homology and U bo 97.8 0.00024 8.3E-09 62.0 11.9 93 597-691 9-105 (137)
173 1wao_1 Serine/threonine protei 97.7 8.3E-05 2.8E-09 80.9 10.5 116 638-758 16-135 (477)
174 3q7a_A Farnesyltransferase alp 97.7 0.008 2.7E-07 61.0 24.1 169 439-612 67-257 (349)
175 1elr_A TPR2A-domain of HOP; HO 97.7 0.00015 5.3E-09 62.4 9.9 27 630-656 81-107 (131)
176 1hxi_A PEX5, peroxisome target 97.7 0.00014 4.9E-09 62.1 9.1 90 600-691 20-113 (121)
177 1elr_A TPR2A-domain of HOP; HO 97.6 0.00037 1.3E-08 59.9 11.4 57 600-656 7-66 (131)
178 2xev_A YBGF; tetratricopeptide 97.6 0.00089 3.1E-08 57.5 13.6 86 604-691 9-104 (129)
179 2if4_A ATFKBP42; FKBP-like, al 97.6 9.9E-05 3.4E-09 76.3 8.3 95 665-762 232-328 (338)
180 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00036 1.2E-08 65.6 11.5 90 598-689 89-183 (198)
181 2dba_A Smooth muscle cell asso 97.6 0.00095 3.3E-08 58.8 13.5 27 630-656 101-127 (148)
182 1ihg_A Cyclophilin 40; ppiase 97.6 0.00022 7.4E-09 74.6 10.3 90 628-755 273-363 (370)
183 1zu2_A Mitochondrial import re 97.6 7.1E-05 2.4E-09 65.9 5.2 96 639-762 13-120 (158)
184 3ro3_A PINS homolog, G-protein 97.5 0.00058 2E-08 61.2 10.9 93 599-691 51-157 (164)
185 3k9i_A BH0479 protein; putativ 97.5 8.7E-05 3E-09 63.0 4.6 86 640-761 2-89 (117)
186 4b4t_Q 26S proteasome regulato 97.5 0.0015 5E-08 70.2 15.4 158 534-691 11-203 (434)
187 3k9i_A BH0479 protein; putativ 97.4 0.00023 8E-09 60.2 6.6 89 611-701 4-100 (117)
188 2hr2_A Hypothetical protein; a 97.4 0.00048 1.6E-08 60.8 8.4 60 630-691 59-130 (159)
189 2xev_A YBGF; tetratricopeptide 97.4 0.0022 7.4E-08 55.0 12.8 90 572-664 12-110 (129)
190 3lvg_A Clathrin heavy chain 1; 97.4 0.0014 4.9E-08 67.4 12.7 431 86-583 53-533 (624)
191 4b4t_Q 26S proteasome regulato 97.4 0.0036 1.2E-07 67.1 17.2 189 503-691 11-244 (434)
192 3rkv_A Putative peptidylprolyl 97.4 0.0012 4E-08 59.7 11.1 58 599-656 65-125 (162)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0015 5.2E-08 70.5 13.2 85 597-683 317-405 (457)
194 2l6j_A TPR repeat-containing p 97.3 0.00069 2.4E-08 56.3 8.1 93 627-757 3-102 (111)
195 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00069 2.3E-08 69.9 9.6 91 599-691 232-327 (338)
196 3n71_A Histone lysine methyltr 97.3 0.00052 1.8E-08 74.1 8.7 108 630-768 353-470 (490)
197 1ihg_A Cyclophilin 40; ppiase 97.1 0.0018 6.2E-08 67.5 10.9 87 596-684 272-362 (370)
198 2kat_A Uncharacterized protein 97.1 0.0014 4.7E-08 55.1 8.2 78 646-761 3-81 (115)
199 1na3_A Designed protein CTPR2; 97.1 0.0026 8.8E-08 50.4 9.5 57 629-687 10-67 (91)
200 3bee_A Putative YFRE protein; 97.1 0.0021 7.1E-08 51.4 8.1 51 714-764 24-74 (93)
201 1klx_A Cysteine rich protein B 97.0 0.0038 1.3E-07 54.4 10.3 107 542-656 10-125 (138)
202 3ma5_A Tetratricopeptide repea 97.0 0.0025 8.6E-08 51.9 8.5 64 626-691 5-69 (100)
203 3lvg_A Clathrin heavy chain 1; 97.0 0.00055 1.9E-08 70.4 5.3 433 191-685 52-534 (624)
204 1zu2_A Mitochondrial import re 97.0 0.001 3.4E-08 58.6 5.8 34 578-612 18-51 (158)
205 2l6j_A TPR repeat-containing p 96.9 0.00028 9.7E-09 58.8 2.2 86 596-683 3-98 (111)
206 3qwp_A SET and MYND domain-con 96.9 0.0035 1.2E-07 66.5 10.6 126 635-807 294-427 (429)
207 2kat_A Uncharacterized protein 96.8 0.0019 6.6E-08 54.1 6.7 64 626-691 17-81 (115)
208 1klx_A Cysteine rich protein B 96.8 0.0075 2.6E-07 52.5 10.4 112 576-695 9-129 (138)
209 1dce_A Protein (RAB geranylger 96.8 0.036 1.2E-06 61.2 17.8 166 511-680 44-243 (567)
210 3qww_A SET and MYND domain-con 96.7 0.0031 1.1E-07 66.8 8.4 115 640-800 310-431 (433)
211 3n71_A Histone lysine methyltr 96.7 0.012 4.1E-07 63.4 13.0 120 572-691 319-463 (490)
212 1na3_A Designed protein CTPR2; 96.7 0.0065 2.2E-07 47.9 8.3 79 596-676 8-90 (91)
213 3ma5_A Tetratricopeptide repea 96.6 0.0049 1.7E-07 50.1 7.5 48 714-761 22-69 (100)
214 1pc2_A Mitochondria fission pr 96.2 0.046 1.6E-06 47.5 11.3 80 645-761 15-99 (152)
215 3ly7_A Transcriptional activat 96.2 0.094 3.2E-06 53.1 15.1 134 625-763 191-340 (372)
216 3ly7_A Transcriptional activat 96.1 0.047 1.6E-06 55.4 12.2 74 625-702 274-347 (372)
217 3mkq_A Coatomer beta'-subunit; 95.8 0.15 5E-06 59.5 17.3 115 504-653 660-774 (814)
218 2kc7_A BFR218_protein; tetratr 95.7 0.013 4.4E-07 47.2 5.4 55 635-691 7-63 (99)
219 3u64_A Protein TP_0956; tetrat 95.6 0.15 5E-06 49.5 13.0 128 609-769 133-276 (301)
220 3mkq_A Coatomer beta'-subunit; 95.4 0.37 1.3E-05 56.1 18.3 76 566-655 633-708 (814)
221 2kc7_A BFR218_protein; tetratr 95.3 0.021 7.1E-07 45.9 5.4 60 603-664 6-69 (99)
222 3qwp_A SET and MYND domain-con 95.1 0.064 2.2E-06 56.8 9.7 62 630-691 331-399 (429)
223 3qww_A SET and MYND domain-con 95.0 0.05 1.7E-06 57.5 8.3 62 630-691 342-410 (433)
224 3bee_A Putative YFRE protein; 94.8 0.27 9.3E-06 38.8 10.3 64 626-691 4-71 (93)
225 1nzn_A CGI-135 protein, fissio 93.9 0.44 1.5E-05 39.7 9.8 48 714-761 53-102 (126)
226 3mkq_B Coatomer subunit alpha; 93.5 2.1 7.3E-05 38.0 14.2 129 504-654 13-141 (177)
227 1wy6_A Hypothetical protein ST 93.2 2.9 0.0001 34.9 13.1 138 608-765 18-157 (172)
228 1pc2_A Mitochondria fission pr 92.6 0.65 2.2E-05 40.2 9.3 31 631-663 74-104 (152)
229 1wy6_A Hypothetical protein ST 92.1 3.7 0.00012 34.3 12.3 85 508-594 73-157 (172)
230 3mkq_B Coatomer subunit alpha; 91.7 5.9 0.0002 35.2 14.5 102 405-523 15-116 (177)
231 1y8m_A FIS1; mitochondria, unk 91.2 4.4 0.00015 34.3 12.4 48 714-761 57-105 (144)
232 2v5f_A Prolyl 4-hydroxylase su 91.0 1 3.6E-05 36.2 8.6 60 631-690 8-73 (104)
233 4gns_B Protein CSD3, chitin bi 90.7 1.6 5.5E-05 49.0 12.3 46 714-759 352-397 (754)
234 2v5f_A Prolyl 4-hydroxylase su 90.7 1.8 6.2E-05 34.8 9.8 66 598-665 6-81 (104)
235 4gns_B Protein CSD3, chitin bi 89.8 1.1 3.7E-05 50.4 10.0 51 637-689 346-397 (754)
236 3u64_A Protein TP_0956; tetrat 89.1 1.9 6.5E-05 41.8 9.8 64 630-695 201-272 (301)
237 1nzn_A CGI-135 protein, fissio 88.8 3.3 0.00011 34.5 9.7 92 644-739 17-114 (126)
238 2wpv_A GET4, UPF0363 protein Y 87.9 22 0.00075 35.0 20.0 169 497-691 34-216 (312)
239 2wpv_A GET4, UPF0363 protein Y 86.7 26 0.00088 34.5 17.6 167 296-488 35-215 (312)
240 4h7y_A Dual specificity protei 85.7 5.1 0.00018 34.3 9.2 110 625-765 10-126 (161)
241 3o48_A Mitochondria fission 1 85.3 1.9 6.5E-05 36.0 6.4 48 714-761 58-106 (134)
242 3lpz_A GET4 (YOR164C homolog); 82.3 41 0.0014 33.3 19.3 113 296-419 37-160 (336)
243 4b4t_P 26S proteasome regulato 81.6 55 0.0019 34.3 21.8 224 430-693 141-387 (445)
244 2ff4_A Probable regulatory pro 81.3 6.3 0.00021 40.7 10.1 67 631-699 174-246 (388)
245 1wdy_A 2-5A-dependent ribonucl 78.4 48 0.0016 31.6 15.5 47 272-318 192-240 (285)
246 1v54_E Cytochrome C oxidase po 76.2 10 0.00035 29.8 7.1 62 240-302 26-87 (109)
247 4fhn_B Nucleoporin NUP120; pro 76.0 45 0.0015 40.1 16.6 184 568-759 818-1047(1139)
248 2uwj_G Type III export protein 75.9 18 0.00061 28.2 8.2 79 576-658 20-98 (115)
249 2p58_C Putative type III secre 75.8 19 0.00065 28.1 8.3 79 576-658 21-99 (116)
250 1n11_A Ankyrin; clathrin, BAND 74.9 83 0.0028 32.6 17.9 112 93-219 17-136 (437)
251 4h7y_A Dual specificity protei 73.4 43 0.0015 28.7 12.4 56 541-597 74-129 (161)
252 2ff4_A Probable regulatory pro 73.3 7.5 0.00026 40.1 7.9 67 599-665 173-247 (388)
253 1wdy_A 2-5A-dependent ribonucl 72.8 66 0.0023 30.6 15.3 46 475-520 193-240 (285)
254 2qx5_A Nucleoporin NIC96; mRNA 72.1 1.2E+02 0.004 33.5 17.2 40 299-338 157-199 (661)
255 1zbp_A Hypothetical protein VP 70.0 17 0.00059 34.6 8.6 114 636-762 5-129 (273)
256 1v54_E Cytochrome C oxidase po 69.5 23 0.0008 27.8 7.6 64 644-709 26-90 (109)
257 3lpz_A GET4 (YOR164C homolog); 69.0 95 0.0032 30.8 27.4 114 498-622 37-161 (336)
258 1y8m_A FIS1; mitochondria, unk 68.0 55 0.0019 27.7 11.1 77 660-738 36-116 (144)
259 1qsa_A Protein (soluble lytic 67.8 1.5E+02 0.005 32.5 29.4 124 73-220 57-181 (618)
260 2uwj_G Type III export protein 66.8 31 0.0011 26.9 7.7 78 274-355 21-98 (115)
261 3ffl_A Anaphase-promoting comp 66.3 39 0.0013 29.5 9.4 115 631-758 23-147 (167)
262 3kea_A K1L; tropism, ANK repea 66.2 89 0.0031 30.1 13.8 17 346-362 209-225 (285)
263 3eiq_C Programmed cell death p 65.9 33 0.0011 34.5 10.3 67 399-465 221-292 (358)
264 3o48_A Mitochondria fission 1 65.5 51 0.0017 27.5 9.5 74 661-736 38-115 (134)
265 4fhn_B Nucleoporin NUP120; pro 63.8 1E+02 0.0035 37.0 16.1 165 89-275 814-987 (1139)
266 2p58_C Putative type III secre 63.6 51 0.0018 25.8 8.7 78 274-355 22-99 (116)
267 2y69_E Cytochrome C oxidase su 62.0 27 0.00092 29.1 7.1 61 241-302 70-130 (152)
268 3esl_A Checkpoint serine/threo 61.1 95 0.0033 28.1 11.4 83 614-697 61-149 (202)
269 4b4t_P 26S proteasome regulato 59.6 1.7E+02 0.0058 30.5 20.0 221 531-764 141-388 (445)
270 3ffl_A Anaphase-promoting comp 56.5 92 0.0031 27.2 10.0 28 597-624 122-149 (167)
271 2y69_E Cytochrome C oxidase su 56.1 49 0.0017 27.6 7.6 62 646-709 71-133 (152)
272 3kea_A K1L; tropism, ANK repea 56.0 1.4E+02 0.0047 28.6 13.1 47 91-137 32-78 (285)
273 4g8k_A 2-5A-dependent ribonucl 53.4 1.7E+02 0.0059 28.7 14.1 104 481-596 219-328 (337)
274 1qsa_A Protein (soluble lytic 53.4 2.6E+02 0.0088 30.6 35.1 251 295-555 73-347 (618)
275 1zbp_A Hypothetical protein VP 51.1 21 0.0007 34.1 5.5 48 714-761 12-59 (273)
276 3jxi_A Vanilloid receptor-rela 50.3 34 0.0012 32.4 7.4 53 233-285 11-72 (260)
277 4b4t_R RPN7, 26S proteasome re 49.6 50 0.0017 34.4 9.0 90 602-691 136-236 (429)
278 3ltj_A Alpharep-4; protein eng 47.1 1.5E+02 0.0053 26.3 18.7 147 500-655 32-178 (201)
279 3eiq_C Programmed cell death p 46.4 76 0.0026 31.9 9.2 65 298-362 221-290 (358)
280 4ady_A RPN2, 26S proteasome re 45.3 4.1E+02 0.014 30.7 30.5 26 195-220 232-257 (963)
281 4ady_A RPN2, 26S proteasome re 44.8 4.2E+02 0.014 30.6 37.2 253 405-665 384-663 (963)
282 1n11_A Ankyrin; clathrin, BAND 44.2 2.8E+02 0.0095 28.4 16.7 110 302-420 118-234 (437)
283 3twe_A Alpha4H; unknown functi 43.9 26 0.00088 18.7 2.7 17 792-808 3-19 (27)
284 3eu9_A Huntingtin-interacting 43.9 1.9E+02 0.0064 26.3 12.1 16 202-217 115-130 (240)
285 4b4t_R RPN7, 26S proteasome re 43.7 1.7E+02 0.0057 30.3 11.9 62 630-691 133-196 (429)
286 2zu6_B Programmed cell death p 43.2 66 0.0023 31.6 8.0 64 399-462 170-238 (307)
287 1k1a_A B-cell lymphoma 3-encod 43.0 1.8E+02 0.0062 26.5 11.3 19 438-456 18-36 (241)
288 4b4t_S RPN3, 26S proteasome re 42.3 2E+02 0.007 30.4 11.9 74 73-146 213-298 (523)
289 3hra_A Ankyrin repeat family p 42.1 1.3E+02 0.0043 26.7 9.7 52 304-360 12-67 (201)
290 3ltm_A Alpha-REP4; protein eng 41.9 1.9E+02 0.0066 25.9 18.3 92 560-656 93-184 (211)
291 3ljn_A Hypothetical protein; a 41.8 1.2E+02 0.0043 30.2 10.5 72 184-256 39-113 (364)
292 2zu6_B Programmed cell death p 41.1 23 0.00078 34.9 4.3 160 90-251 6-193 (307)
293 2nsz_A Programmed cell death p 40.9 51 0.0018 27.4 5.9 60 90-150 10-74 (129)
294 3hra_A Ankyrin repeat family p 40.4 1E+02 0.0036 27.3 8.8 17 203-219 12-28 (201)
295 3b7b_A Euchromatic histone-lys 40.4 2.1E+02 0.0073 26.0 12.2 37 182-218 28-66 (237)
296 4a1g_A Mitotic checkpoint seri 39.2 1.8E+02 0.0063 24.9 10.1 53 645-697 82-135 (152)
297 1k1a_A B-cell lymphoma 3-encod 39.0 2.3E+02 0.0077 25.8 12.5 29 332-360 13-41 (241)
298 2nsz_A Programmed cell death p 38.8 62 0.0021 26.9 6.1 62 631-696 10-76 (129)
299 3jxi_A Vanilloid receptor-rela 35.9 1.1E+02 0.0036 28.8 8.4 87 335-421 12-116 (260)
300 3ltm_A Alpha-REP4; protein eng 34.5 2.5E+02 0.0086 25.0 18.6 80 494-577 93-172 (211)
301 2qx5_A Nucleoporin NIC96; mRNA 34.4 5E+02 0.017 28.5 21.1 40 198-237 157-199 (661)
302 3esl_A Checkpoint serine/threo 33.9 1.7E+02 0.0057 26.5 8.3 51 575-625 92-143 (202)
303 2wvi_A Mitotic checkpoint seri 33.7 2.4E+02 0.0081 24.5 10.9 79 614-698 47-131 (164)
304 3eu9_A Huntingtin-interacting 33.3 1.7E+02 0.0058 26.6 9.3 19 200-218 46-64 (240)
305 3txn_A 26S proteasome regulato 32.9 4.1E+02 0.014 27.0 19.3 247 496-745 19-301 (394)
306 2rfa_A Transient receptor pote 32.6 2E+02 0.0069 26.1 9.7 17 202-218 9-25 (232)
307 3ltj_A Alpharep-4; protein eng 32.5 2.6E+02 0.0089 24.6 18.1 105 498-610 92-196 (201)
308 2ion_A PDCD4, programmed cell 32.0 51 0.0018 28.4 4.6 59 90-149 12-75 (152)
309 2pk8_A Uncharacterized protein 31.3 41 0.0014 25.6 3.2 24 792-815 15-38 (103)
310 2pnn_A Transient receptor pote 30.6 1.9E+02 0.0065 27.2 9.3 16 304-319 108-123 (273)
311 2ion_A PDCD4, programmed cell 29.8 63 0.0021 27.8 4.8 62 631-696 12-78 (152)
312 3ljn_A Hypothetical protein; a 28.6 2.7E+02 0.0094 27.5 10.5 174 504-688 58-266 (364)
313 2dl1_A Spartin; SPG20, MIT, st 28.3 1.9E+02 0.0067 23.3 6.9 35 718-761 48-82 (116)
314 2rfa_A Transient receptor pote 27.7 1.8E+02 0.0062 26.4 8.3 47 346-392 135-183 (232)
315 3t8k_A Uncharacterized protein 26.5 3.2E+02 0.011 23.9 9.4 55 204-259 14-70 (186)
316 2pnn_A Transient receptor pote 26.4 2.7E+02 0.0091 26.1 9.5 15 406-420 109-123 (273)
317 2d2s_A Exocyst complex compone 26.1 1.9E+02 0.0064 27.0 7.7 28 594-621 88-115 (235)
318 3aji_A 26S proteasome non-ATPa 25.4 1.5E+02 0.0051 26.9 7.3 20 199-218 9-28 (231)
319 2d2s_A Exocyst complex compone 25.2 1.8E+02 0.0063 27.0 7.5 21 231-251 25-45 (235)
320 4aez_C MAD3, mitotic spindle c 25.1 3.3E+02 0.011 25.0 8.8 53 645-697 131-184 (223)
321 1ug3_A EIF4GI, eukaryotic prot 24.9 1.3E+02 0.0045 30.0 6.9 55 90-144 14-72 (339)
322 2etb_A Transient receptor pote 24.6 2.2E+02 0.0075 26.4 8.4 26 233-258 8-33 (256)
323 4g8k_A 2-5A-dependent ribonucl 24.6 4.9E+02 0.017 25.2 18.6 105 279-395 219-329 (337)
324 2fu4_A Ferric uptake regulatio 24.3 2.1E+02 0.0073 21.0 7.3 62 551-613 6-68 (83)
325 4a1g_A Mitotic checkpoint seri 24.2 2.9E+02 0.0098 23.6 7.8 41 581-621 84-125 (152)
326 2rg8_A Programmed cell death p 23.0 47 0.0016 29.1 2.7 22 633-654 15-36 (165)
327 1wj6_A KIAA0049 protein, RSGI 22.9 1.7E+02 0.0057 22.9 5.3 31 772-802 18-48 (101)
328 2r9g_A AAA ATPase, central reg 22.1 4.3E+02 0.015 23.7 9.0 61 532-593 16-84 (204)
329 3d9h_A CDNA FLJ77766, highly s 21.8 2.1E+02 0.0072 27.3 7.7 18 197-214 16-33 (285)
330 2keb_A DNA polymerase subunit 21.7 2.2E+02 0.0074 22.1 5.7 56 647-704 28-88 (101)
331 3ygs_P Procaspase 9; apoptosis 20.8 1E+02 0.0036 23.9 4.1 40 101-140 51-90 (97)
332 2etb_A Transient receptor pote 20.6 1.2E+02 0.0041 28.3 5.5 54 265-319 5-68 (256)
333 2r9g_A AAA ATPase, central reg 20.1 4.8E+02 0.016 23.4 10.1 44 634-678 17-63 (204)
334 3syn_E ATP-binding protein YLX 20.0 53 0.0018 16.8 1.4 17 746-762 3-19 (23)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-40 Score=375.85 Aligned_cols=497 Identities=10% Similarity=-0.035 Sum_probs=327.0
Q ss_pred HHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHH
Q 039792 203 YAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIH 282 (819)
Q Consensus 203 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 282 (819)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 56678888899999999989999999999999999999999999999985 5678899999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCC-------------------CcccHHHHHHHHHcCCChhH
Q 039792 283 AHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVK-------------------NIISWTTLIGGYMQNSFDRE 343 (819)
Q Consensus 283 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 343 (819)
+.+... ++++.+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678899999999999999999999999965433 36789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcch-HHHHHHHhcCCcchhhH--HHH-HHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHH
Q 039792 344 AMKLFTEMTRSGWKPDDFA-CSSVLTSCGSVEALEQG--RQV-HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFD 419 (819)
Q Consensus 344 A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (819)
|+++|++|.+. .|+..+ +..+...+...+..+.. ..+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 99999999884 465443 44444433333322221 111 4445555555566778888999999999999999999
Q ss_pred hcCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchh
Q 039792 420 VMAD--RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVF 497 (819)
Q Consensus 420 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 497 (819)
++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. ..+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 788999999999999999999999999998654 2355556666666666666666666666665433 22444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN 574 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 574 (819)
+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------------- 434 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-------------------- 434 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 555555555555555555555554432 233344444444544555555554444444
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLF 651 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 651 (819)
+.++. +..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++..|.+.|++++|+++|
T Consensus 435 ---------------~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 435 ---------------RLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp ---------------HTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------HhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33321 44445555555555555555555555443 234555555555555556666666666
Q ss_pred HHHHHc----CCCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 652 REMIIE----GLEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 652 ~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ ..+...|..+...|.+.+ +.+.|...++++
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 576 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK-IPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 665553 44555 3456666666666666666666666665522 123445555555555443 556666666777
Q ss_pred HccCCCCchhHHHHHHHHHh
Q 039792 726 ISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 726 ~~~~p~~~~~~~~l~~~y~~ 745 (819)
++++|+++..|..|+++|..
T Consensus 577 l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 577 LAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTC-
T ss_pred HhcCCCChHHHHHHHHHHhc
Confidence 77788888888888877743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-39 Score=368.31 Aligned_cols=495 Identities=11% Similarity=-0.042 Sum_probs=347.4
Q ss_pred HHHcCCChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCch
Q 039792 96 NYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGN 175 (819)
Q Consensus 96 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 175 (819)
.+.+.|.+..++..|+.++.+++..|+.++.+|.+.|++++|+.+|++|+ +..|+..++..+..+|...|++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~--- 135 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYAR--- 135 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHH---
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHH---
Confidence 35677888888999999988899999999999999999999999999984 345788888999999999998764
Q ss_pred hHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCC-------------------CeeeHHHHHHHHHh
Q 039792 176 VGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVK-------------------TAVSWTTIITGYVK 236 (819)
Q Consensus 176 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~ 236 (819)
+..++..+. ..++++.+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+
T Consensus 136 -A~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 136 -AKCLLTKED--LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp -HHHHHHHTC--GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHh--ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 344443322 23688899999999999999999999999965433 37899999999999
Q ss_pred cCCchhHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCChhh--HHHH-HHHHHHhCCCCchhHHHHHHHHhHhCCChHH
Q 039792 237 SGRSDLSLNLFNQMRETDVVHD-KYLLSSVLSACSMLQFVGG--GKQI-HAHVLRRGMGMDVSVINVLMDFYSKCGRVKM 312 (819)
Q Consensus 237 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 312 (819)
.|++++|+++|++|.+.+ |+ ...+..+...+...+..+. +..+ +..+...+..+...+++.++..|.+.|++++
T Consensus 213 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 999999999999998754 43 3344444444433322221 1111 4444555555566778888999999999999
Q ss_pred HHHHHhcccC--CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcC
Q 039792 313 ARRLFDEIEV--KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKAN 390 (819)
Q Consensus 313 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 390 (819)
|.++|+++.. ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 9999999986 788999999999999999999999999998754 2367778888888888888888888888887543
Q ss_pred CCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 039792 391 IESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSL 467 (819)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 467 (819)
+.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+.
T Consensus 370 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------- 438 (597)
T 2xpi_A 370 -PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ---------- 438 (597)
T ss_dssp -TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT----------
T ss_pred -cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------
Confidence 34566777777777777777777777776642 3456777777777777777777777777654321
Q ss_pred HHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHH
Q 039792 468 LGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAI 547 (819)
Q Consensus 468 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 547 (819)
.+..+|+.++.+|.+.|++++|.
T Consensus 439 ---------------------------------------------------------~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 439 ---------------------------------------------------------GTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp ---------------------------------------------------------TCSHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------------------------------------------------cchHHHHHHHHHHHHcCCHHHHH
Confidence 12334444455555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 548 KLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL----GLDFD--SFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 548 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
++|+++.+.. +.+..+|..+...+.+.|++++|.++++.+.+. +..|+ ..++..++.+|.+.|++++|.+.|+
T Consensus 462 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555555432 234556666666666666666666666666554 55565 5677777777777777777777777
Q ss_pred cCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHH
Q 039792 622 STT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSAC 673 (819)
Q Consensus 622 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 673 (819)
++. +.+..+|..+..+|...|++++|.+.|+++.+ +.|+. ..+..+..+|
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 655 34677888888888888888888888888888 67865 4555555444
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.3e-27 Score=256.57 Aligned_cols=182 Identities=11% Similarity=0.104 Sum_probs=170.5
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCchhH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS---------LKHGQQFHNHLIKLGLDFDSFI 599 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~ 599 (819)
.++.+|++|++.|+.++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4677888899999999999999999999999999999999999987664 6789999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC----CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT----WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH 675 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 675 (819)
|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999887 789999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhc
Q 039792 676 AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR 710 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r 710 (819)
.|++++|.++|++|.+.|..|+..||+.+++.+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988765
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=9.9e-27 Score=254.44 Aligned_cols=210 Identities=10% Similarity=0.063 Sum_probs=160.8
Q ss_pred HHHHHHHHHhCCCCCCh-hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcC
Q 039792 445 ALDLFHEMRVGFVPPGL-LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMN 523 (819)
Q Consensus 445 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 523 (819)
+..+.+++.+.+..+.. ..++.+|.+|++.|++++|.++++.|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 33444444444444332 234555566666666666666666666666666666666666666555443221
Q ss_pred CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 039792 524 QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSAL 603 (819)
Q Consensus 524 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 603 (819)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|++|
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 123456889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCC----CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHcc
Q 039792 604 IDMYAKCGSLEDAYETFGSTT----WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHA 676 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 676 (819)
|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..|...
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999887 7899999999999999999999999999999999999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.2e-22 Score=218.54 Aligned_cols=371 Identities=13% Similarity=0.096 Sum_probs=244.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcch-HHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCC
Q 039792 332 IGGYMQNSFDREAMKLFTEMTRSGWKPDDFA-CSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDS 410 (819)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 410 (819)
...+.+.|++++|++.++.+.+. .|+... +..+...+...|+++.|...+....+.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 44566777788888777777653 454333 2233333445555555555555554432 2234444555555555555
Q ss_pred HHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHH
Q 039792 411 LTEARKVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLI 487 (819)
Q Consensus 411 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 487 (819)
+++|...|+++.. | +..+|..+...+.+.|++++|++.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------------------- 127 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA----------------------------------- 127 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------
Confidence 5555555544432 2 2223444444455555555555444444
Q ss_pred HHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039792 488 IKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFT 564 (819)
Q Consensus 488 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 564 (819)
.+.... +...+..+...+...|++++|.+.|+++.+ | +..+|+.+...|...|++++|+..|+++.+.. +.+...
T Consensus 128 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 128 LQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 433221 333445566666667777777777766643 2 34567777777888888888888888877642 334566
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH 641 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 641 (819)
+..+...+...|++++|...+....+..+. +..++..+...|.+.|++++|.+.|+++. +.+..+|..+...|.+.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 777777888888888888888888777654 56777788888888888888888887765 33566788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHH
Q 039792 642 GEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGR 719 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~ 719 (819)
|++++|++.|+++.+ ..|+ ..++..+...+...|++++|.+.++++.+. .|+ ...+..+...+.+.+ +.+.|.
T Consensus 285 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g-~~~~A~ 359 (388)
T 1w3b_A 285 GSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQG-KLQEAL 359 (388)
T ss_dssp SCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTT-CCHHHH
T ss_pred CCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcC-CHHHHH
Confidence 888888888888887 4554 467888888888888888888888888762 233 456666777666554 778888
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHhCCC
Q 039792 720 YAAEMAISIDPMDSGSYTLLSNTFACNSM 748 (819)
Q Consensus 720 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 748 (819)
..++++++++|+++.+|..++.+|...|+
T Consensus 360 ~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 360 MHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 88888888888888888888888877664
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=1.9e-22 Score=217.01 Aligned_cols=349 Identities=11% Similarity=0.028 Sum_probs=274.8
Q ss_pred hhcCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHH
Q 039792 405 YAKCDSLTEARKVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSK 481 (819)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 481 (819)
+.+.|++++|...+..+.+ | +...+..+...+.+.|++++|...++...+. .+.+..++..+..++...|++++|.
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 3444555555555554432 2 2234444445555555566665555555432 2334455555555666666666666
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--CC-eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039792 482 QIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--RD-IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQ 558 (819)
Q Consensus 482 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 558 (819)
..++.+.+.... +...+..+...|.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+.|+++....
T Consensus 88 ~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 88 EHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 666665554322 455678899999999999999999998864 43 4567778888999999999999999998752
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHH
Q 039792 559 RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMI 635 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 635 (819)
+-+..++..+...+...|+++.|...++.+.+.++. +...+..+...+...|++++|...|++.. +.+..+|..+.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 345788999999999999999999999999998765 67889999999999999999999998765 44678999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccch
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWN 714 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~ 714 (819)
..|...|++++|++.|+++.+ +.|+. .++..+..++.+.|++++|.+.|+++.+.. .++...+..+...+.+.+ +
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g-~ 320 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG-N 320 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT-C
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC-C
Confidence 999999999999999999998 67864 679999999999999999999999999832 345667888888887655 8
Q ss_pred hhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 715 VELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+.|...+++++++.|+++..+..++.+|...|++++|.+.++++.+
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999875
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.2e-21 Score=217.27 Aligned_cols=248 Identities=11% Similarity=-0.006 Sum_probs=210.1
Q ss_pred cCChHHHHHHHHhcCC----------------C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 509 CFSNKDARLVFDEMNQ----------------R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
.|++++|...|+++.+ | +...|..+...+...|++++|...|+++.... |+..++..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 7788888888776543 1 24567778888999999999999999998764 447788888999
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKAL 648 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 648 (819)
+...|+++.|...++.+.+..+. +...+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999887654 67788999999999999999999998765 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC----chHHHHHHHHhhc---ccchhhhHH
Q 039792 649 LLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG----MEHYASVVSLLGR---NVWNVELGR 719 (819)
Q Consensus 649 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~----~~~y~~li~~l~r---~~w~~~~a~ 719 (819)
..++++.+ ..|+ ..++..+...+...|++++|...++++.+ ..-.|+ ...+..+...+.+ .+ +.+.|.
T Consensus 359 ~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~ 435 (514)
T 2gw1_A 359 TLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEAT 435 (514)
T ss_dssp HHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHHH
T ss_pred HHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHHH
Confidence 99999998 5665 46788899999999999999999999987 333333 3367777777766 43 889999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 720 YAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 720 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988763
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-19 Score=202.88 Aligned_cols=434 Identities=9% Similarity=-0.013 Sum_probs=223.9
Q ss_pred eHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 039792 226 SWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYS 305 (819)
Q Consensus 226 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 305 (819)
.|......+.+.|++++|+..|+++.+.. |+...+..+..++...|+++.|...++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45556667777777888887777777654 566667777777777777777777777666654 224455555666666
Q ss_pred hCCChHHHHHHHhcccCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHH
Q 039792 306 KCGRVKMARRLFDEIEVK---NIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQV 382 (819)
Q Consensus 306 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 382 (819)
+.|++++|...|+++... +......++..+........+.+.+..+...+..|+...+..-...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------- 151 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER------------- 151 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH-------------
Confidence 666666666666554321 2222333333333222222222223222222222222211111000
Q ss_pred HHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCC-CcchHHHHHHHHHh---cCChhHHHHHHHHHHh----
Q 039792 383 HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADR-NVVSYNAMIEGYSK---EEKLSEALDLFHEMRV---- 454 (819)
Q Consensus 383 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~---- 454 (819)
.......|+.......+..+...... ..+..+ +...+......+.. .|++++|+..|+++.+
T Consensus 152 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 152 ---KDKQENLPSVTSMASFFGIFKPELTF-------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCC-------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ---HhhccCCchhHHHHHHHhhcCHHHHH-------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 00011112222111111111111110 001111 12333334444443 7888888888888766
Q ss_pred -CCCCCC--------hhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC-
Q 039792 455 -GFVPPG--------LLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ- 524 (819)
Q Consensus 455 -~g~~p~--------~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 524 (819)
....|+ ..++..+...+...|+++.|...+..+.+.... ...+..+...|...|++++|...|+.+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 322222 234445555566666666666666666665444 55566666666666666666666665543
Q ss_pred --CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 039792 525 --RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSA 602 (819)
Q Consensus 525 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 602 (819)
.+...|..+...|...|++++|+..|++..... +.+..++..+...+...|+++.|...++.+.+..+. +...+..
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 377 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNF 377 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHH
Confidence 234455666666666666666666666666542 223455556666666666666666666666655433 4455566
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCC------hHhHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCc-hhHHHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT---WKD------VACWNSMICTNAH---HGEPMKALLLFREMIIEGLEPNY-ITFVGV 669 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~---~~~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 669 (819)
+...|.+.|++++|.+.|+++. +.+ ...|..+...|.. .|++++|++.|+++.+ ..|+. .++..+
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l 455 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 6666666666666666665543 111 2256666666666 6666666666666665 34433 345555
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 039792 670 LSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 670 l~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..++...|++++|...|++..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 5666666666666666665554
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=8e-20 Score=200.76 Aligned_cols=307 Identities=12% Similarity=-0.017 Sum_probs=220.6
Q ss_pred ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 039792 394 DNFVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGL 470 (819)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 470 (819)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|...|++++|+..|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------
Confidence 344555555666666666666666665432 23445555666666666666666666665443
Q ss_pred hhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCe------eehhhh-----------
Q 039792 471 SSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDI------VVWNAM----------- 533 (819)
Q Consensus 471 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l----------- 533 (819)
+.. +...+..+...|.+.|++++|...|+++.+.++ ..|..+
T Consensus 90 --------------------~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 90 --------------------KMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp --------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 211 334455555555666666666666655543211 333333
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 534 -LLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 534 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|..+++.+.+..+. +..++..+..+|.+.|+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 344788899999999999988752 456778888889999999999999999998887544 67888999999999999
Q ss_pred HHHHHHHHhcCC---CCChHhHHHH------------HHHHHhCCChHHHHHHHHHHHHcCCCCCc-----hhHHHHHHH
Q 039792 613 LEDAYETFGSTT---WKDVACWNSM------------ICTNAHHGEPMKALLLFREMIIEGLEPNY-----ITFVGVLSA 672 (819)
Q Consensus 613 ~~~A~~~~~~~~---~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a 672 (819)
+++|.+.|+++. +.+...|..+ ...|...|++++|+..|+++.+ +.|+. ..+..+..+
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHH
Confidence 999999998876 3344555555 7889999999999999999998 66763 367888889
Q ss_pred HHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 673 CSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
+.+.|++++|...++++.+.. ..+...|..+..++...+ +.+.|...++++++++|+++..+..++.+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE-MYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 999999999999999988732 124566777777766544 88999999999999999999999999933
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=9.1e-20 Score=205.32 Aligned_cols=247 Identities=11% Similarity=0.040 Sum_probs=204.8
Q ss_pred CChHHHHHHHHhcCCCCe----------eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 039792 510 FSNKDARLVFDEMNQRDI----------VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLK 579 (819)
Q Consensus 510 g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 579 (819)
|++++|..+|+++.+.++ .+|..+...+...|++++|...|++.... .|+..++..+...+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 467888888888765322 24566667788999999999999999885 566888889999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
.|...++.+.+..+. +..++..+...|...|++++|.+.|++.. +.+...|..+...|...|++++|++.|+++.+
T Consensus 294 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999988765 78889999999999999999999999876 45678999999999999999999999999998
Q ss_pred cCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCc----hHHHHHHHHhhcc----------cchhhhHHH
Q 039792 657 EGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGM----EHYASVVSLLGRN----------VWNVELGRY 720 (819)
Q Consensus 657 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~----~~y~~li~~l~r~----------~w~~~~a~~ 720 (819)
..|+. ..+..+...+...|++++|.+.|+++.+ ..-.+.. ..+......+.+. + +.+.|..
T Consensus 373 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~ 449 (537)
T 3fp2_A 373 --KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIK 449 (537)
T ss_dssp --HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHH
T ss_pred --hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh-HHHHHHH
Confidence 56764 5888999999999999999999999987 3222221 1122222333221 2 7899999
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 721 AAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 721 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998764
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=3.5e-18 Score=192.30 Aligned_cols=425 Identities=11% Similarity=0.043 Sum_probs=240.1
Q ss_pred eeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 039792 225 VSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFY 304 (819)
Q Consensus 225 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 304 (819)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+++.. +.+...+..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 345566677777778888888877776643 2355667777777777777777777777777765 23566777788888
Q ss_pred HhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC------CCCCCcchHHHHHHHhcCCcchhh
Q 039792 305 SKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRS------GWKPDDFACSSVLTSCGSVEALEQ 378 (819)
Q Consensus 305 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 378 (819)
.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...+...+. ..+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCHHH
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcChHH
Confidence 88888888888886443 22222333344555556667788888877543 12222222222211 111111
Q ss_pred HHHHHHHHHHcCCCCChh---HHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039792 379 GRQVHAYSFKANIESDNF---VKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVG 455 (819)
Q Consensus 379 a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 455 (819)
+...+. .....+.. ....+...+...+. ......|++++|+.+|+++.+.
T Consensus 179 ~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~-----------------------~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 179 EVSSVN----TSSNYDTAYALLSDALQRLYSATDE-----------------------GYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp HHHTSC----CCCSSCSSHHHHHHHHHHHHTCSHH-----------------------HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHh----hccccccHHHHHHHHHHHHHHhhhh-----------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 111100 00011111 22222222222210 0000012344444444444332
Q ss_pred CCCCCh--------hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---
Q 039792 456 FVPPGL--------LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--- 524 (819)
Q Consensus 456 g~~p~~--------~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 524 (819)
.|+. .++..+-..+...|+++.|...+..+.+.... ...+..+...|...|++++|...|+++.+
T Consensus 232 --~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 232 --NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred --CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 1111 12222333334444444444444444443322 34444455555555555555555554432
Q ss_pred CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 039792 525 RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALI 604 (819)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 604 (819)
.+..+|..+...|...|++++|...|++..... +.+...+..+...+...|++++|..+++.+.+..+. +...+..+.
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 385 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFA 385 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 234456666667777777777777777776542 224456667777777777777777777777776543 566777777
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---------CChHhHHHHHHHHHhC----------CChHHHHHHHHHHHHcCCCCCc-h
Q 039792 605 DMYAKCGSLEDAYETFGSTTW---------KDVACWNSMICTNAHH----------GEPMKALLLFREMIIEGLEPNY-I 664 (819)
Q Consensus 605 ~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~-~ 664 (819)
..|.+.|++++|.+.|+++.. .....+..+...|... |++++|+..|++..+ ..|+. .
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~ 463 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQ 463 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHH
Confidence 888888888888887776541 1122344455666666 888889998888887 56654 5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 665 TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 665 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
++..+..++...|++++|.+.|++..+
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 778888888889999999998888887
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=8.5e-19 Score=192.52 Aligned_cols=296 Identities=14% Similarity=0.102 Sum_probs=247.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHH
Q 039792 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALID 504 (819)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 504 (819)
+...|..+...+.+.|++++|+.+|+++.+. .| .+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p----------------------------------~~~~~~~~l~~ 68 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DP----------------------------------DNYIAYYRRAT 68 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC----------------------------------ccHHHHHHHHH
Confidence 3456777777788888888888888777542 11 24566777888
Q ss_pred HHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHH---------
Q 039792 505 AYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE----FTFAAL--------- 568 (819)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l--------- 568 (819)
.|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|.+.|+++... .|+. ..+..+
T Consensus 69 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ 146 (450)
T 2y4t_A 69 VFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRL 146 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHH
Confidence 89999999999999998764 35678899999999999999999999999874 4554 444444
Q ss_pred ---HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCC
Q 039792 569 ---ITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHG 642 (819)
Q Consensus 569 ---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 642 (819)
...+...|+++.|...++.+.+..+. +..++..++.+|.+.|++++|.+.|+++. +.+..+|..+...|...|
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34488899999999999999988654 78899999999999999999999999876 567889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCchh-HHHH------------HHHHHccCCHHHHHHHHHHHHh-cCCccC--chHHHHHHH
Q 039792 643 EPMKALLLFREMIIEGLEPNYIT-FVGV------------LSACSHAGLIEDGLDHFQSMAG-FGIEPG--MEHYASVVS 706 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~-~g~~p~--~~~y~~li~ 706 (819)
++++|++.|+++.+ +.|+... +..+ ..+|.+.|++++|..+|+++.+ .+-.|. ..+|.++..
T Consensus 226 ~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 99999999999998 6787654 4444 7889999999999999999998 332222 457888888
Q ss_pred HhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 707 LLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 707 ~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
++.+.+ +.+.|...++++++++|+++..|..++.+|...|++++|.+.++++.+.
T Consensus 304 ~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 304 CFSKDE-KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 888765 8999999999999999999999999999999999999999999999864
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=7e-15 Score=169.50 Aligned_cols=629 Identities=11% Similarity=0.066 Sum_probs=348.5
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC-------CCcchHHHHHHHHHcCCChhhHHHHHHHH
Q 039792 72 KQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE-------RNLVSWSSLVSMYTKKGYGEEALMVFIGF 144 (819)
Q Consensus 72 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 144 (819)
-++-..+...++. +.+-+..+.+.|-+.|-+..|.+.+..+.. .....=..++.-+.+ =..+.+++.+++|
T Consensus 593 pqvadail~~~~f-thyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~ 670 (1630)
T 1xi4_A 593 PQVADAILGNQMF-THYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAM 670 (1630)
T ss_pred hhHHHHHHhcCcc-ccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 3444555556655 667788889999999999999999987643 112222334444444 5678999999999
Q ss_pred HHcCCCCCC-------------cccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhH
Q 039792 145 LKVGNGRPD-------------DYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDD 211 (819)
Q Consensus 145 ~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 211 (819)
+. .+++-| ...-..+|..+-+.+..+. .--..+.+ -.+..|+.+....|.+.++.|++.+
T Consensus 671 l~-~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~eg----l~y~l~si--v~~s~d~~vhfkyi~aa~~~~q~~e 743 (1630)
T 1xi4_A 671 LS-ANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEG----LFYFLGSI--VNFSQDPDVHFKYIQAACKTGQIKE 743 (1630)
T ss_pred HH-HhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhh----HHHHHHhh--ccccCChHHHHHHHHHHHHhCCchh
Confidence 53 222222 1222333333333332220 00011111 1245688899999999999999999
Q ss_pred HHHHHhcC---------------CCCCe---------e-------------eHHHHHHHHHhcCCchhHHHHHHHHHHCC
Q 039792 212 AKFVFDGL---------------MVKTA---------V-------------SWTTIITGYVKSGRSDLSLNLFNQMRETD 254 (819)
Q Consensus 212 A~~~f~~~---------------~~~~~---------~-------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g 254 (819)
.+++..+- .-+|. . .....|..|++.-++..+-.+...+...+
T Consensus 744 veri~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d 823 (1630)
T 1xi4_A 744 VERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVD 823 (1630)
T ss_pred hhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCC
Confidence 98887643 11111 0 11233455555444444444444433322
Q ss_pred CCCChhhHHHHHHH-------------hhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHH--------
Q 039792 255 VVHDKYLLSSVLSA-------------CSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMA-------- 313 (819)
Q Consensus 255 ~~p~~~t~~~ll~~-------------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-------- 313 (819)
-+......+|.. +-+.+++..-...++.-+..| ..++.++|+|...|...++-.+.
T Consensus 824 --~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~y 900 (1630)
T 1xi4_A 824 --CSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYY 900 (1630)
T ss_pred --CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcc
Confidence 223333333333 223333333344455555555 34788999999888865432221
Q ss_pred -----HHHHhcccCCCc---------------------ccHHHHHHHHHcCCChhHHH-----------HHHHHHHH---
Q 039792 314 -----RRLFDEIEVKNI---------------------ISWTTLIGGYMQNSFDREAM-----------KLFTEMTR--- 353 (819)
Q Consensus 314 -----~~~~~~~~~~~~---------------------~~~~~li~~~~~~g~~~~A~-----------~~~~~m~~--- 353 (819)
-+..++. .|.. ..|-...+.+++..+.+-=- ++.+.-..
T Consensus 901 d~~~vgkyce~r-Dp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL 979 (1630)
T 1xi4_A 901 DSRVVGKYCEKR-DPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTAL 979 (1630)
T ss_pred cHHHHHHHHHhc-CcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhc
Confidence 1111110 0000 00111111111111111000 01111000
Q ss_pred -CCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCC--CCChhHHhHH---------------------------hh
Q 039792 354 -SGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANI--ESDNFVKNSL---------------------------VD 403 (819)
Q Consensus 354 -~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l---------------------------i~ 403 (819)
+...|+. .....+++...|...++.++++.++-.+- ..+....+.| ..
T Consensus 980 ~e~~~Pee--Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~ 1057 (1630)
T 1xi4_A 980 SETQDPEE--VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAN 1057 (1630)
T ss_pred ccccCHHH--hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHH
Confidence 0112222 22334444455555555555554442211 0112223333 34
Q ss_pred hhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHH
Q 039792 404 MYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQI 483 (819)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 483 (819)
.+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+-.++...|++++|...
T Consensus 1058 Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4455566666666666653 11111222222 455666666666643 2345666666777777777777666
Q ss_pred HHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039792 484 HGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN 561 (819)
Q Consensus 484 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 561 (819)
+... -|...|..++..+.+.|++++|.+.|....+ +++...+.++.+|++.+++++. +-| .. .|+
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel-e~f---I~---~~n 1194 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL-EEF---IN---GPN 1194 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH-HHH---Hh---CCC
Confidence 6442 3555666677777777777777777765443 3333344566777777666642 222 11 345
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhC
Q 039792 562 EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHH 641 (819)
Q Consensus 562 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 641 (819)
...|..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhh
Confidence 556666777777777777777777763 36777777788888888888777766 4557777777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc-cchhhhHHH
Q 039792 642 GEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN-VWNVELGRY 720 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~-~w~~~~a~~ 720 (819)
|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|.-+..+|.+. .-++....+
T Consensus 1264 ~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777765543 22344556688889999999999999997776422 22334455555566543 015555566
Q ss_pred HHHHHHccCC-----CCchhHHHHHHHHHhCCCchHHHHH
Q 039792 721 AAEMAISIDP-----MDSGSYTLLSNTFACNSMWADAKQV 755 (819)
Q Consensus 721 ~~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~a~~~ 755 (819)
.+..-+.+.| +++..|..+.-+|.+.|+|++|...
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6666677666 6788899999999999999999853
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=2.7e-16 Score=166.52 Aligned_cols=296 Identities=11% Similarity=0.081 Sum_probs=198.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHH
Q 039792 427 VSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAY 506 (819)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 506 (819)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|+++.|...+..+.+...
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------- 68 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-------------- 68 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------
Confidence 345556666667777777777777665431 12233333333333344444444444443333321
Q ss_pred HhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHH------------HH
Q 039792 507 SKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP----NEFTFAAL------------IT 570 (819)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------l~ 570 (819)
.+...|..+...|...|++++|...|++..+. .| +...+..+ ..
T Consensus 69 ------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 69 ------------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp ------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 12234444555555556666666666555543 23 22222222 46
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
.+...|+++.|..+++.+.+..+. +...+..+...|.+.|++++|.+.++++. +.+...|..+...|...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 677888889999888888887654 67788888889999999999999888765 45677888889999999999999
Q ss_pred HHHHHHHHHcCCCCCch-hHH------------HHHHHHHccCCHHHHHHHHHHHHh-cCCccCc--hHHHHHHHHhhcc
Q 039792 648 LLLFREMIIEGLEPNYI-TFV------------GVLSACSHAGLIEDGLDHFQSMAG-FGIEPGM--EHYASVVSLLGRN 711 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~--~~y~~li~~l~r~ 711 (819)
.+.|++..+ ..|+.. .+. .+...+.+.|++++|...++++.+ ..-.|.. ..+..+...+...
T Consensus 208 ~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 999999987 567653 232 225568889999999999999887 3222211 1122333444333
Q ss_pred cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 712 VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 712 ~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+ +.+.|...++++++.+|+++..|..++.+|...|++++|.+.+++..+
T Consensus 286 ~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 286 E-KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp T-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred c-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 889999999999999999999999999999999999999999998875
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=2.1e-13 Score=157.43 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=90.0
Q ss_pred hhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 039792 395 NFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSV 474 (819)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 474 (819)
+.+|..+..++.+.|++++|...|.+. .|...|.-++..+.+.|++++|++.|..-++.. ++....+.+..+|++.
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 344445555555555555555555332 334444445555555555555555554433322 1111122244444444
Q ss_pred CchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHH
Q 039792 475 FSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELL 554 (819)
Q Consensus 475 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 554 (819)
++++....+. + .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 4444322221 1 112233334444555555555555555543 24445555555555555555554433
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 555 LSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 555 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
-+..+|..+-.+|...|++..|....-. +..++..+..++..|.+.|.+++|..+++...
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2334444444455554444444443321 11233344445555555555555555554443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=1.3e-15 Score=161.26 Aligned_cols=324 Identities=12% Similarity=-0.003 Sum_probs=219.3
Q ss_pred hHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 039792 396 FVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSS 472 (819)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 472 (819)
..+..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 3455566667777777777777776643 345567777777778888888888888776542 224456666666666
Q ss_pred ccCchHhHHHHHHHHHHhCCc--cchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHH
Q 039792 473 SVFSLESSKQIHGLIIKYGVF--LDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY 550 (819)
Q Consensus 473 ~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 550 (819)
..|+++.|...+..+.+.... .+...+..+...+. +. .+..+...+...|++++|++.|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~------------~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------MQ------------RLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------HH------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------HH------------HHHHHHHHHHHccCHHHHHHHH
Confidence 777777777777766654331 12233332321111 00 1223455677777788888887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC
Q 039792 551 LELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKD 627 (819)
Q Consensus 551 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~ 627 (819)
+++.+.. +.+...+..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|.+.|++.. +.+
T Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 144 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 7777642 345666777777777788888888888877776543 66777777888888888888888777655 233
Q ss_pred hHhHH------------HHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-----hHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 628 VACWN------------SMICTNAHHGEPMKALLLFREMIIEGLEPNYI-----TFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 628 ~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
...|. .+...+...|++++|++.++++.+ ..|+.. .+..+..++.+.|++++|.+.+++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333 235668888999999999999888 556643 24456678888999999999999888
Q ss_pred hcCCcc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 691 GFGIEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 691 ~~g~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
+. .| +...+..+...+.+.+ +.+.|...++++++++|+++..+..|..++...
T Consensus 300 ~~--~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 300 QM--EPDNVNALKDRAEAYLIEE-MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred Hh--CcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 73 23 3456666666665544 888999999999999999999888888776543
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=4.8e-16 Score=161.41 Aligned_cols=345 Identities=15% Similarity=0.121 Sum_probs=141.7
Q ss_pred HcCCChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhH
Q 039792 98 SKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVG 177 (819)
Q Consensus 98 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 177 (819)
-+.|++++|.+++++++.|+ +|+.|..++.+.|++++|++.|.+. +|..+|..++.+|...|++++|+...
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 36788999999999997764 9999999999999999999999754 67889999999999999998766544
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCC
Q 039792 178 EQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVH 257 (819)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 257 (819)
+.. .+. .+++.+.+.|+.+|.|+|+++++.++++. |+..+|+.+...|...|.+++|..+|..+
T Consensus 85 ~~a----rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMA----RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-------
T ss_pred HHH----HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 433 332 45678899999999999999999988864 67789999999999999999999999977
Q ss_pred ChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHc
Q 039792 258 DKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQ 337 (819)
Q Consensus 258 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 337 (819)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .+......++..|.+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH
Confidence 36888888888888888888887766 267788888888888888888876666544 333334457777888
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhh--cCCCHHHHH
Q 039792 338 NSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYA--KCDSLTEAR 415 (819)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~ 415 (819)
.|++++|+.+++..... .+- ....|+-|.-.|+ +-+++.+..
T Consensus 220 ~G~~eEai~lLe~aL~l--e~a----------------------------------h~~~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 220 RGYFEELITMLEAALGL--ERA----------------------------------HMGMFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp TTCHHHHHHHHHHHTTS--TTC----------------------------------CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC--cHH----------------------------------HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888888888776532 221 1112222222222 233444555
Q ss_pred HHHHhcCC--------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHH
Q 039792 416 KVFDVMAD--------RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLI 487 (819)
Q Consensus 416 ~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 487 (819)
+.|..-.. .+...|..+...|.+.++++.|....-+ . +|+...-........+..+.+.--+.....
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~---h--~~~a~~~~~f~~~~~kv~n~elyYkai~fy 338 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQFY 338 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh---C--ChhhhhhHHHHHHHhchhHHHHHHHHHHHH
Confidence 55543222 2456788899999999999988774332 2 233333333333344444444333333333
Q ss_pred HHhCCccchhhHHHHHHHHHhcCChHHHHHHHHh
Q 039792 488 IKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDE 521 (819)
Q Consensus 488 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 521 (819)
+.. .+...|-|+.++...=+...+..+|+.
T Consensus 339 l~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 339 LEF----KPLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHH----CGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred Hhc----CHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 321 223344444444444444444444443
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=1.7e-16 Score=164.78 Aligned_cols=222 Identities=9% Similarity=0.042 Sum_probs=85.2
Q ss_pred HhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHH
Q 039792 204 AKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHA 283 (819)
Q Consensus 204 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 283 (819)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996654 899999999999999999999965 3678899999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchH
Q 039792 284 HVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFAC 363 (819)
Q Consensus 284 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 363 (819)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 45678899999999999999999988864 67779999999999999999999999976 478
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 039792 364 SSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLS 443 (819)
Q Consensus 364 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 443 (819)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .+......++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888888888888888888776 367788888888888888888876666544 33333445777788888888
Q ss_pred HHHHHHHHHHh
Q 039792 444 EALDLFHEMRV 454 (819)
Q Consensus 444 ~A~~~~~~m~~ 454 (819)
+|+.+++....
T Consensus 225 Eai~lLe~aL~ 235 (449)
T 1b89_A 225 ELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 88888887654
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=2.3e-15 Score=157.28 Aligned_cols=260 Identities=9% Similarity=-0.027 Sum_probs=149.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
+...+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 344444555555555666666666555542 123344445555666666666666666665531 2234555555556
Q ss_pred HhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 572 ASNLG-SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 572 ~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
+...| +++.|...++.+.+..+. +...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 66666 666666666666655433 45556666666666666666666666544 23345555566666666666666
Q ss_pred HHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCC-------ccCchHHHHHHHHhhcccchhhhH
Q 039792 648 LLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGI-------EPGMEHYASVVSLLGRNVWNVELG 718 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~-------~p~~~~y~~li~~l~r~~w~~~~a 718 (819)
++.+++..+ ..|+. ..+..+...+...|++++|...++++.+ ..- ......+..+...+.+.+ +.+.|
T Consensus 179 ~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A 255 (330)
T 3hym_B 179 ERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK-KYAEA 255 (330)
T ss_dssp HHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc-CHHHH
Confidence 666666665 44543 4555666666666666666666666655 210 122344555555554332 56666
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 719 RYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 719 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
...+++++++.|+++..+..++.+|...|++++|.+.+++.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666644
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=3.5e-15 Score=155.85 Aligned_cols=286 Identities=12% Similarity=-0.028 Sum_probs=193.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHH
Q 039792 424 RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALI 503 (819)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 503 (819)
.+...+..+...+...|++++|+++|+++.+.. +. +...+..++
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~-----------------------------------~~~~~~~~~ 63 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PF-----------------------------------HASCLPVHI 63 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------------------------------CTTTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC-----------------------------------ChhhHHHHH
Confidence 344556666666667777777777777765432 11 222333344
Q ss_pred HHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 039792 504 DAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQL-ENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLK 579 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 579 (819)
..+...|+.++|...|+++.+ .+...|..+...+...| ++++|...|++..... +.+...+..+...+...|+++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHH
Confidence 455555556666555555442 23455666666677777 7777777777776542 234556677777777777788
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
+|...++.+.+..+. +...+..+...|...|++++|.+.|++.. +.+...|..+...|...|++++|+..++++.+
T Consensus 143 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 143 QAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 887777777776544 45566667788888888888888887654 44567788888888888888888888888876
Q ss_pred cCC--------CCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHcc
Q 039792 657 EGL--------EPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISI 728 (819)
Q Consensus 657 ~g~--------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~ 728 (819)
..- ..+..++..+..++...|++++|...+++..+.. ..+...+..+...+.+.+ +.+.|...+++++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMG-NFENAVDYFHTALGL 299 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHT-CHHHHHHHHHTTTTT
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhc-cHHHHHHHHHHHHcc
Confidence 310 1224577888888888888888888888887732 123445555665555443 788888889999999
Q ss_pred CCCCchhHHHHHHHHH-hCCCc
Q 039792 729 DPMDSGSYTLLSNTFA-CNSMW 749 (819)
Q Consensus 729 ~p~~~~~~~~l~~~y~-~~g~~ 749 (819)
+|+++..+..++..|. ..|+.
T Consensus 300 ~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CSCCHHHHHHHHHHHHTTTTC-
T ss_pred CCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999884 45554
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=7e-15 Score=162.33 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-----------
Q 039792 541 LENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK----------- 609 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------- 609 (819)
|+.++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+..+. +..++..+...|..
T Consensus 227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555544431 233444555555555555555555555555555433 34444444444322
Q ss_pred --------cCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch----hHHHHHH-HH
Q 039792 610 --------CGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI----TFVGVLS-AC 673 (819)
Q Consensus 610 --------~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~-a~ 673 (819)
.+..+.|...|++.. +.+..+|..+...|...|++++|++.|++.++ +.|+.. .+..+.. ..
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~--~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS--KELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHH
Confidence 233567777777654 44567889999999999999999999999998 455432 2333333 34
Q ss_pred HccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHH
Q 039792 674 SHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAK 753 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 753 (819)
.+.|+.++|++.|++..+ +.|+.....- ....++..+++.++.+|+++.+|..|+.+|...|++++|.
T Consensus 383 ~~~~~~~~Ai~~y~kal~--i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVK--INQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HTSSCHHHHHHHHHHHHH--SCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHCCCHHHHHHHHHHHHh--cCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 578999999999999887 3454322211 3445567788999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcCCCceeEE
Q 039792 754 QVRKKMDLDGLMKEAGRSWI 773 (819)
Q Consensus 754 ~~~~~m~~~g~~~~~g~s~i 773 (819)
+.+++..+.|..-....+|+
T Consensus 451 ~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --------------------
T ss_pred HHHHHHHhcCCCCCcHhhcC
Confidence 99999988776544455555
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=1.4e-13 Score=152.43 Aligned_cols=383 Identities=14% Similarity=0.061 Sum_probs=217.9
Q ss_pred chhHHHHHHHHhHh----CCChHHHHHHHhcccC-CCcccHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCcchH
Q 039792 293 DVSVINVLMDFYSK----CGRVKMARRLFDEIEV-KNIISWTTLIGGYMQ----NSFDREAMKLFTEMTRSGWKPDDFAC 363 (819)
Q Consensus 293 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 363 (819)
++..+..|-..|.. .+++++|...|++..+ .+...+..|-..|.. .++.++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444444455554 5556666665555432 233444445555555 555566666665555433 22222
Q ss_pred HHHHHHhcC----CcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhc----CCCHHHHHHHHHhcCC-CCcchHHHHHH
Q 039792 364 SSVLTSCGS----VEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAK----CDSLTEARKVFDVMAD-RNVVSYNAMIE 434 (819)
Q Consensus 364 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~ 434 (819)
..+-..+.. .++.++|...++...+.| +...+..|..+|.. .++.++|...|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 223222222 344444544444444433 22333334444433 4455555555544332 23334444444
Q ss_pred HHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHh--
Q 039792 435 GYSK----EEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK-- 508 (819)
Q Consensus 435 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-- 508 (819)
.|.. .++.++|+..|++.. +.| +...+..+..+|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~-----------------------------------~~~---~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSA-----------------------------------TSG---DELGQLHLADMYYFGI 233 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHH-----------------------------------HTT---CHHHHHHHHHHHHHTS
T ss_pred HHhcCCCCCcCHHHHHHHHHHHH-----------------------------------HCC---CHHHHHHHHHHHHcCC
Confidence 4444 444555555554443 332 23344445555544
Q ss_pred --cCChHHHHHHHHhcCC-CCeeehhhhHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----C
Q 039792 509 --CFSNKDARLVFDEMNQ-RDIVVWNAMLLGYTQ----QLENEEAIKLYLELLLSQQRPNEFTFAALITAASNL-----G 576 (819)
Q Consensus 509 --~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g 576 (819)
.++.++|...|++..+ .+...+..+...|.. .+++++|++.|++..+.| +...+..+-..+... +
T Consensus 234 g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcC
Confidence 5566666666665543 344455555556665 677888888888777654 344555565666555 7
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhcCC-CCChHhHHHHHHHHHh----CCChHHHH
Q 039792 577 SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG---SLEDAYETFGSTT-WKDVACWNSMICTNAH----HGEPMKAL 648 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~ 648 (819)
++++|...++...+.+ +...+..|..+|.+.| +.++|.+.|++.. ..+...+..|...|.. .+++++|+
T Consensus 311 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 8888888888888765 4456677777777756 7788888887765 4567788888888887 78888888
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCc-cC-chHHHHHHHHhhcccchhhhHHHHH
Q 039792 649 LLFREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIE-PG-MEHYASVVSLLGRNVWNVELGRYAA 722 (819)
Q Consensus 649 ~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~-p~-~~~y~~li~~l~r~~w~~~~a~~~~ 722 (819)
+.|++..+.| +...+..|...|.+ .++.++|...|++..+.+.. |+ ......+-.++.. +.+.++..+
T Consensus 388 ~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~---~~~~a~~~a 461 (490)
T 2xm6_A 388 IWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK---QLQQAELLS 461 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH---HHHHHHHHH
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh---HHHHHHHHH
Confidence 8888888754 45567777777777 78888888888888875532 21 1111112122211 445555566
Q ss_pred HHHHccCCC
Q 039792 723 EMAISIDPM 731 (819)
Q Consensus 723 ~~~~~~~p~ 731 (819)
++.++..|+
T Consensus 462 ~~~~~~~~~ 470 (490)
T 2xm6_A 462 QQYIEKYAP 470 (490)
T ss_dssp HHHHHHHCH
T ss_pred HHHHHHHHH
Confidence 666665554
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=8.6e-16 Score=163.44 Aligned_cols=292 Identities=12% Similarity=0.095 Sum_probs=160.4
Q ss_pred hhcCCCHHHHHH-HHHhcCC--C-----CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 039792 405 YAKCDSLTEARK-VFDVMAD--R-----NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFS 476 (819)
Q Consensus 405 ~~~~g~~~~A~~-~~~~m~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 476 (819)
+.-.|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344466777776 6665432 1 24456677777777777777777777776542 2233334344444444444
Q ss_pred hHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHC
Q 039792 477 LESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLS 556 (819)
Q Consensus 477 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 556 (819)
++.|...+..+.+... .+..+|..+...|...|++++|++.|+++...
T Consensus 114 ~~~A~~~~~~al~~~~--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 114 ELLAISALRRCLELKP--------------------------------DNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC--------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444444433321 13334444555555555555555555555543
Q ss_pred CCCCCHH-HHH---------------HHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHH
Q 039792 557 QQRPNEF-TFA---------------ALITAASNLGSLKHGQQFHNHLIKLGLDF-DSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 557 g~~p~~~-t~~---------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
. |+.. .+. ..+..+...|++++|...++.+.+..+.. +..++..+...|.+.|++++|.+.
T Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 162 T--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp S--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2 2111 110 01222335666666666666666654432 455666666677777777777776
Q ss_pred HhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCc
Q 039792 620 FGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIE 695 (819)
Q Consensus 620 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 695 (819)
|+++. +.+..+|..+...|...|++++|+..|+++.+ +.|+. .++..+..+|.+.|++++|...|+++.+. .
T Consensus 240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 315 (368)
T 1fch_A 240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--Q 315 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--H
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 66544 33456677777777777777777777777766 45543 45666666777777777777776666541 1
Q ss_pred cCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 039792 696 PGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKK 758 (819)
Q Consensus 696 p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 758 (819)
|+.. ...-+..|..+..|..++.+|...|++++|..++++
T Consensus 316 ~~~~-----------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 316 RKSR-----------------------GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTC-----------------------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCC-----------------------CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 1100 000012344488999999999999999999998764
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=6.9e-14 Score=142.54 Aligned_cols=248 Identities=9% Similarity=-0.052 Sum_probs=200.6
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCe----eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 039792 504 DAYSKCFSNKDARLVFDEMNQRDI----VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLK 579 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 579 (819)
.-....|++..|...++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 344567888899988887765332 2445567889999999999987654 24567788888999999999999
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039792 580 HGQQFHNHLIKLGLDF-DSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEG 658 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 658 (819)
.|.+.++.+...+..| +...+..+..+|...|++++|.+.+++ ..+...+..++..|.+.|+.++|.+.|+++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 158 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD-- 158 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 9999999998876444 566777788999999999999999999 56788999999999999999999999999998
Q ss_pred CCCCchhH---HHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchh
Q 039792 659 LEPNYITF---VGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGS 735 (819)
Q Consensus 659 ~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~ 735 (819)
..|+.... ..++..+...|++++|..+|+++.+. ...+...+..+...+.+.+ +.+.|+..++++++++|+++.+
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQG-RWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHH
Confidence 46876422 22334455669999999999999984 2245566777777666554 8899999999999999999999
Q ss_pred HHHHHHHHHhCCCchH-HHHHHHHHHh
Q 039792 736 YTLLSNTFACNSMWAD-AKQVRKKMDL 761 (819)
Q Consensus 736 ~~~l~~~y~~~g~~~~-a~~~~~~m~~ 761 (819)
+..++.++...|++++ +.++++++.+
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999987 5688888765
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=2.4e-13 Score=152.09 Aligned_cols=209 Identities=12% Similarity=0.036 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHhCCccchhhHHHHHHHHHh-------cCChH-------HHHHHHHhcCC---C-CeeehhhhHHHHHhc
Q 039792 479 SSKQIHGLIIKYGVFLDVFAGSALIDAYSK-------CFSNK-------DARLVFDEMNQ---R-DIVVWNAMLLGYTQQ 540 (819)
Q Consensus 479 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 540 (819)
.+..+++..+.... .+...|..+...+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45556666665432 245566666666654 57765 77777777653 3 345677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHhcCCHHHHH
Q 039792 541 LENEEAIKLYLELLLSQQRPN-E-FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM-YAKCGSLEDAY 617 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~ 617 (819)
|++++|..+|++..+. .|+ . ..|......+.+.|+++.|..+++...+.... +...+...+.+ +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 7777887777777763 443 2 35666666666777777777777777765322 22333222222 23567777777
Q ss_pred HHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 618 ETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEG-LEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 618 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+|++.. +.+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+..+++++.+
T Consensus 412 ~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 412 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777654 3456677777777777777777777777777642 1222 12465666666667777777777777766
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=8e-17 Score=179.91 Aligned_cols=149 Identities=9% Similarity=0.095 Sum_probs=127.2
Q ss_pred CCcchhhHHHHHHHhcCChhHHHHHHhcC-------CCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHH
Q 039792 191 RDVYVGTSLMNLYAKNGSVDDAKFVFDGL-------MVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLS 263 (819)
Q Consensus 191 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 263 (819)
.-..+||+||++|||.|++++|.++|++| ..||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 33468999999999999999999999775 46899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCh-hhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCC-----CcccHHHHHHHHHc
Q 039792 264 SVLSACSMLQFV-GGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVK-----NIISWTTLIGGYMQ 337 (819)
Q Consensus 264 ~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~ 337 (819)
++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999998887776666665555554421 23445556666766
Q ss_pred CC
Q 039792 338 NS 339 (819)
Q Consensus 338 ~g 339 (819)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=2.7e-13 Score=151.72 Aligned_cols=176 Identities=7% Similarity=-0.001 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhcCCC---C-ChHhHHHHHHHHHhC
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAK-------CGSLE-------DAYETFGSTTW---K-DVACWNSMICTNAHH 641 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 641 (819)
.+..++++++...+. +...|..++..+.+ .|+++ +|.++|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 555666666665433 56666666666664 57765 67777766542 2 456677777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHH--HHHHhhcccchhh
Q 039792 642 GEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYAS--VVSLLGRNVWNVE 716 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~--li~~l~r~~w~~~ 716 (819)
|++++|.++|+++++ +.|+. ..|..++..+.+.|++++|.++|++..+. .|. ...|.. .+...... +.+
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~--~~~ 408 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK--DKS 408 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC--CHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC--Chh
Confidence 777777777777776 56653 35666666666777777777777777652 122 122221 12111111 567
Q ss_pred hHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 717 LGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 717 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.|...++++++..|+++..|..++.++...|+.++|..++++..+.
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777776654
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=175.23 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=121.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchh
Q 039792 593 LDFDSFITSALIDMYAKCGSLEDAYETFGSTT-------WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 593 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 665 (819)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33356689999999999999999999996643 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC---------chh
Q 039792 666 FVGVLSACSHAGL-IEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD---------SGS 735 (819)
Q Consensus 666 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~---------~~~ 735 (819)
|++||.++++.|+ .++|.++|++|.+.|+.||..+|+|+++..+|. ...++.+ +++|+- ..+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-----~vL~~Vr---kv~P~f~p~~~~~~~~~t 274 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-----TVLKAVH---KVKPTFSLPPQLPPPVNT 274 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-----HHHHHHG---GGCCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-----HHHHHHH---HhCcccCCCCCCcccccc
Confidence 9999999999998 578999999999999999999999999877763 2222333 333321 223
Q ss_pred HHHHHHHHHhCC
Q 039792 736 YTLLSNTFACNS 747 (819)
Q Consensus 736 ~~~l~~~y~~~g 747 (819)
-.+|-++|...+
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 446778888765
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.64 E-value=1.6e-14 Score=153.54 Aligned_cols=300 Identities=9% Similarity=-0.044 Sum_probs=218.3
Q ss_pred HhcCCcchhhHHH-HHHHHHHcCCC-C--ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC
Q 039792 369 SCGSVEALEQGRQ-VHAYSFKANIE-S--DNFVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEK 441 (819)
Q Consensus 369 ~~~~~~~~~~a~~-~~~~~~~~g~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 441 (819)
++...++++.|.. .+....+.... | +...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4556688888887 77655543221 1 345677888999999999999999999864 356789999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHh
Q 039792 442 LSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDE 521 (819)
Q Consensus 442 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 521 (819)
+++|+..|++..+.. +.+..++..+...+...|+++.|...+..+.+....... .+..+... . .
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~-------~-------~ 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH-LVTPAEEG-------A-------G 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG-GCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHHHHH-------h-------h
Confidence 999999999997753 446677788888888888888888888888776543221 11111000 0 0
Q ss_pred cCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 039792 522 MNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFIT 600 (819)
Q Consensus 522 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 600 (819)
...+ ...+..+...+ ..|++++|+..|+++...... ++..++..+...+...|++++|...++.+.+..+. +...+
T Consensus 178 ~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~ 254 (368)
T 1fch_A 178 GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLW 254 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHH
Confidence 0000 11222333334 889999999999999875322 15788899999999999999999999999987654 67889
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC------------chh
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN------------YIT 665 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~~t 665 (819)
..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|...|+++.+ +.|+ ..+
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHTC------CCCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCCCccccccchhhHH
Confidence 999999999999999999999865 45678899999999999999999999999987 4443 367
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
|..+..++...|++++|..++++.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999999887643
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=1e-12 Score=145.35 Aligned_cols=349 Identities=11% Similarity=0.033 Sum_probs=246.8
Q ss_pred hhHHhHHhhhhhc----CCCHHHHHHHHHhcCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHH
Q 039792 395 NFVKNSLVDMYAK----CDSLTEARKVFDVMAD-RNVVSYNAMIEGYSK----EEKLSEALDLFHEMRVGFVPPGLLTFV 465 (819)
Q Consensus 395 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 465 (819)
+.....|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 115 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3334444444444 5666666666665433 344555566666665 666666776666665543 333444
Q ss_pred HHHHHhhc----cCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHh----cCChHHHHHHHHhcCC-CCeeehhhhHHH
Q 039792 466 SLLGLSSS----VFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK----CFSNKDARLVFDEMNQ-RDIVVWNAMLLG 536 (819)
Q Consensus 466 ~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 536 (819)
.+-..+.. .++.++|...++...+.| +...+..|...|.. .++.++|.+.|++..+ .+...+..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444 556677777777666655 44556666677766 6778888888877654 455667777777
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 537 YTQ----QLENEEAIKLYLELLLSQQRPNEFTFAALITAASN----LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 537 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
|.. .+++++|++.|++..+.| +...+..+...+.. .+++++|..+++...+.| +...+..+..+|.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE 266 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 777 788889999988888764 45566666666654 788899999998888765 4556677777887
Q ss_pred h----cCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC-
Q 039792 609 K----CGSLEDAYETFGSTT-WKDVACWNSMICTNAHH-----GEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG- 677 (819)
Q Consensus 609 ~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g- 677 (819)
. .++.++|.+.|++.. ..+...+..|...|... ++.++|+..|++..+.| +...+..+...|...|
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 7 889999999998766 44667788888888887 89999999999998854 3456777777777656
Q ss_pred --CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhc----ccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh----CC
Q 039792 678 --LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR----NVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC----NS 747 (819)
Q Consensus 678 --~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r----~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g 747 (819)
+.++|.++|++..+.| +...+..+-.+|-. .. |.+.|...++++.+. .++..+..|+.+|.. .+
T Consensus 344 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKK-DEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCC
Confidence 7889999999988764 33445555555543 11 888999999998885 468899999999998 89
Q ss_pred CchHHHHHHHHHHhCCC
Q 039792 748 MWADAKQVRKKMDLDGL 764 (819)
Q Consensus 748 ~~~~a~~~~~~m~~~g~ 764 (819)
++++|...+++..+.|.
T Consensus 418 d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 99999999999988763
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=3.5e-14 Score=144.71 Aligned_cols=247 Identities=9% Similarity=-0.035 Sum_probs=171.0
Q ss_pred CCCHHHHHHHHHhcCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHH
Q 039792 408 CDSLTEARKVFDVMADRN----VVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQI 483 (819)
Q Consensus 408 ~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 483 (819)
.|++..|...++.....+ ......+..+|...|++++|+..++. .-+|+..++..+...+...++.+.+...
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 455556655555544322 11233345566666666666654433 1334445555555556666666666666
Q ss_pred HHHHHHhCCcc-chhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039792 484 HGLIIKYGVFL-DVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE 562 (819)
Q Consensus 484 ~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 562 (819)
++.+...+..| +...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .|+.
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 163 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDA 163 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCc
Confidence 66665554333 344556667888899999999999988 456678888888999999999999999999875 3554
Q ss_pred HHH---HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHH
Q 039792 563 FTF---AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMIC 636 (819)
Q Consensus 563 ~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 636 (819)
... ...+..+...|++++|..+++.+.+..+ .+...++.+..+|.+.|++++|.+.|++.. +.+..+|..++.
T Consensus 164 ~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~ 242 (291)
T 3mkr_A 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVV 242 (291)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 321 1233444456889999999999988754 478888889999999999999999998865 446778888888
Q ss_pred HHHhCCChHH-HHHHHHHHHHcCCCCCchh
Q 039792 637 TNAHHGEPMK-ALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 637 ~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t 665 (819)
.+...|+.++ +.++++++++ +.|+...
T Consensus 243 ~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 243 LSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 8888888865 5678888888 7787653
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.62 E-value=1.5e-14 Score=153.69 Aligned_cols=258 Identities=13% Similarity=-0.051 Sum_probs=150.6
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHH
Q 039792 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALID 504 (819)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 504 (819)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.... +...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44567788888888888888888888876542 334556666666666666666666666666665422 3555666666
Q ss_pred HHHhcCChHHHHHHHHhcCC--C-C----------eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 039792 505 AYSKCFSNKDARLVFDEMNQ--R-D----------IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-PNEFTFAALIT 570 (819)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 570 (819)
.|.+.|++++|...|+++.+ | + ...+..+...|...|++++|+..|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 66666666666666665543 1 0 112233455566666666666666666654211 14556666666
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
.+...|++++|...++.+.+..+. +..++..+..+|.+.|++++|.+.|+++. +.+..+|..+...|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 666666666666666666665433 45566666666666666666666666544 23455666666666666666666
Q ss_pred HHHHHHHHHcCCCCC-------------chhHHHHHHHHHccCCHHHHHHHHH
Q 039792 648 LLLFREMIIEGLEPN-------------YITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
...|+++.+ +.|+ ...|..+..++...|+.+.+..+.+
T Consensus 301 ~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 301 VSNFLTALS--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHH--HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHH--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666655 2222 3445666666666666665555443
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.61 E-value=1.5e-14 Score=153.58 Aligned_cols=256 Identities=12% Similarity=0.088 Sum_probs=132.2
Q ss_pred hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHH
Q 039792 462 LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYT 538 (819)
Q Consensus 462 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 538 (819)
..+..+...+...|+++.|...++.+.+.... +...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 33555555555666666666666666554332 344555555555555555555555555432 23445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHH-HH----------HHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHH
Q 039792 539 QQLENEEAIKLYLELLLSQQRPNEFT-FA----------ALITAASNLGSLKHGQQFHNHLIKLGLDF-DSFITSALIDM 606 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~----------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 606 (819)
..|++++|+..|+++.+. .|+... +. .+...+...|++++|..+++.+.+..+.. +..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 555555555555555542 222111 11 11334444555555555555555443321 34444455555
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
|.+.|++++|.+.|+++. +.+..+|+.+...|...|++++|++.|+++.+ +.|+. .++..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHH
Confidence 555555555555554433 22344455555555555555555555555544 33432 3444444455555555555
Q ss_pred HHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCC------------CchhHHHHHHHHHhCCCch
Q 039792 683 LDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPM------------DSGSYTLLSNTFACNSMWA 750 (819)
Q Consensus 683 ~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~ 750 (819)
...| ++++++.|+ +...|..|+.+|...|+.+
T Consensus 301 ~~~~------------------------------------~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 301 VSNF------------------------------------LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHH------------------------------------HHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HHHH------------------------------------HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 5554 444444443 4678999999999999999
Q ss_pred HHHHHHHH
Q 039792 751 DAKQVRKK 758 (819)
Q Consensus 751 ~a~~~~~~ 758 (819)
.+.++.++
T Consensus 345 ~a~~~~~~ 352 (365)
T 4eqf_A 345 LFQAANLG 352 (365)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99887664
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=2.8e-14 Score=148.70 Aligned_cols=257 Identities=11% Similarity=0.005 Sum_probs=167.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAAS 573 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 573 (819)
..+..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|...|++..+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3344455556666666666666665542 234455666666666677777777776666542 335556666666667
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHhcCC---CCChHhHHHHH
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSAL--------------ID-MYAKCGSLEDAYETFGSTT---WKDVACWNSMI 635 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 635 (819)
..|++++|...++.+.+..+. +...+..+ .. .+...|++++|.+.++++. +.+...|..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 777777777777766665433 22222222 22 3666677777777777654 34566777777
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccch
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWN 714 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~ 714 (819)
..|...|++++|++.++++.+ ..|+ ..++..+...+...|++++|...++++.+.. ..+...+..+...+.+.+ +
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g-~ 255 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS-Q 255 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-C
T ss_pred HHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc-c
Confidence 777777777777777777776 4554 3567777777777777777777777776621 112344555555554433 6
Q ss_pred hhhHHHHHHHHHccCCC------------CchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 715 VELGRYAAEMAISIDPM------------DSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
.+.|...+++++++.|+ ++..|..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777778888888887 7889999999999999999999988644
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.56 E-value=1.6e-13 Score=142.98 Aligned_cols=256 Identities=11% Similarity=-0.091 Sum_probs=163.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHh
Q 039792 429 YNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK 508 (819)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 508 (819)
|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.... +...+..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 112333333444444444444444444444443211 34445555555666
Q ss_pred cCChHHHHHHHHhcCC--C-Ceeehhhh--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 509 CFSNKDARLVFDEMNQ--R-DIVVWNAM--------------LL-GYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
.|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 6666666666655432 1 11122111 11 2666788888888888887653 346777888888
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
.+...|++++|...++.+.+..+. +...+..+...|.+.|++++|.+.|+++. +.+..+|..+...|...|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 888889999999988888887644 67788888888888899999988888765 44677888888888889999999
Q ss_pred HHHHHHHHHcCCCCC-------------chhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 648 LLLFREMIIEGLEPN-------------YITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
.+.|+++.+ +.|+ ..++..+..++...|++++|..++++..
T Consensus 260 ~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 260 AKQLVRAIY--MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHH--HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHH--hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999988887 4555 3567788888888899988888876543
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=2e-13 Score=132.77 Aligned_cols=191 Identities=12% Similarity=0.012 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHH
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNA 639 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 639 (819)
..+..+...+...|++++|...++.+++..+. +...+..+...|.+.|++++|...|++.. +.+...|..+...|.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 33444444444444445554444444444332 44444445555555555555555554433 223445555555555
Q ss_pred hC-----------CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 640 HH-----------GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 640 ~~-----------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
.. |++++|+..|++.++ +.|+. ..+..+..++...|++++|+..|++..+.. .+...+..+..+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 55 788888888888877 66764 567777778888888888888888887744 455556666655
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
+...+ +.+.|...++++++++|+++..+..++.+|...|++++|.+.+++.
T Consensus 161 ~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMG-RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55443 7788888889999999999999999999999999999999988754
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=2.6e-12 Score=129.91 Aligned_cols=246 Identities=12% Similarity=0.028 Sum_probs=188.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN--EFTFAALITAA 572 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 572 (819)
........+...|++++|...|++..+ | +...|..+...|...|++++|++.|++..+....|+ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344566778888999999999988754 3 455788888999999999999999999987432222 34578888999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
...|++++|...++.+.+..+. +...+..+...|.+.|++++|.+.|++.. +.+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765 67889999999999999999999999877 3456678877734445569999999
Q ss_pred HHHHHHHcCCCCCc-hhHHHHHHHHHccCC---HHHHHHHHHHHHh-cCCccCc------hHHHHHHHHhhcccchhhhH
Q 039792 650 LFREMIIEGLEPNY-ITFVGVLSACSHAGL---IEDGLDHFQSMAG-FGIEPGM------EHYASVVSLLGRNVWNVELG 718 (819)
Q Consensus 650 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~---~~~a~~~~~~m~~-~g~~p~~------~~y~~li~~l~r~~w~~~~a 718 (819)
.|+++.+ +.|+. ..+..+..++...|+ +++|...+++..+ ..-.|+. ..|..+...+.+.+ +.+.|
T Consensus 164 ~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A 240 (272)
T 3u4t_A 164 SFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR-DKVKA 240 (272)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC-CHHHH
Confidence 9999998 67865 567778888888888 8889999999887 4444442 34444555554333 88888
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhCC
Q 039792 719 RYAAEMAISIDPMDSGSYTLLSNTFACNS 747 (819)
Q Consensus 719 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 747 (819)
...++++++++|+|+.++..+..+....+
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 88999999999988888887776665544
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.6e-12 Score=130.05 Aligned_cols=221 Identities=13% Similarity=0.055 Sum_probs=163.1
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--c----hhHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF--D----SFITSA 602 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 602 (819)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+..+.. + ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34556666777777777777777777665 666777777777777888888887777776643321 1 467777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLI 679 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 679 (819)
+...|.+.|++++|.+.|++.. .|+. ..+...|++++|++.++++.. ..|+. ..+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 7788888888888888887765 3442 345566778888888888877 56654 4677777788888888
Q ss_pred HHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 680 EDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 680 ~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
++|...++++.+.. ..+...|..+...+.+.+ +.+.|...+++++++.|+++..|..++.+|...|++++|.+.+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888887722 113445556666655443 7788888888999999999999999999999999999999999988
Q ss_pred HhC
Q 039792 760 DLD 762 (819)
Q Consensus 760 ~~~ 762 (819)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=4.4e-11 Score=131.71 Aligned_cols=364 Identities=10% Similarity=-0.053 Sum_probs=179.5
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHC-----C--CCC-CcchHHHHHHHhcCCcchhhHHHHHHHHHHcC------
Q 039792 325 IISWTTLIGGYMQNSFDREAMKLFTEMTRS-----G--WKP-DDFACSSVLTSCGSVEALEQGRQVHAYSFKAN------ 390 (819)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 390 (819)
...||.|...+...|+.++|++.|++..+. + ..| ...+|..+-..+...|++++|...++.+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 446888888888999999999999886541 1 122 23445555556666666666666665554321
Q ss_pred CCC-ChhHHhHHhhhhhc--CCCHHHHHHHHHhcCC--CC-cchHHHHHHH---HHhcCChhHHHHHHHHHHhCCCCCCh
Q 039792 391 IES-DNFVKNSLVDMYAK--CDSLTEARKVFDVMAD--RN-VVSYNAMIEG---YSKEEKLSEALDLFHEMRVGFVPPGL 461 (819)
Q Consensus 391 ~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~--~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~ 461 (819)
..+ ...++..+..++.+ .+++++|...|++..+ |+ ...+..+... +...++.++|++.+++
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~---------- 200 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ---------- 200 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH----------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH----------
Confidence 001 12222222222222 2334555555544332 21 2222222222 2223444444444444
Q ss_pred hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHH----hcCChHHHHHHHHhcCC---CCeeehhhhH
Q 039792 462 LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYS----KCFSNKDARLVFDEMNQ---RDIVVWNAML 534 (819)
Q Consensus 462 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~---~~~~~~~~li 534 (819)
.++.... +...+..+...+. ..++.++|.+.+++... .+...+..+.
T Consensus 201 -------------------------al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg 254 (472)
T 4g1t_A 201 -------------------------AIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254 (472)
T ss_dssp -------------------------HHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred -------------------------HhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 4433222 2222222222222 22344555555554332 2334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-------------------cCChHHHHHHHHHHHHhCCC
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQQRP-NEFTFAALITAASN-------------------LGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~-------------------~g~~~~a~~~~~~~~~~~~~ 594 (819)
..|...|++++|+..|++..+. .| +..++..+..++.. .+..+.|...++...+..+.
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 5566666666666666665543 23 23333333222211 12356777888888877654
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChH----hHHHHHH-HHHhCCChHHHHHHHHHHHHcCCCCCchhHH
Q 039792 595 FDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVA----CWNSMIC-TNAHHGEPMKALLLFREMIIEGLEPNYITFV 667 (819)
Q Consensus 595 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 667 (819)
+...+..+...|.+.|++++|.+.|++.. .++.. .+..+.. .+...|+.++|+..|++.++ +.|+.....
T Consensus 333 -~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~ 409 (472)
T 4g1t_A 333 -LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKE 409 (472)
T ss_dssp -TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHH
T ss_pred -hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHH
Confidence 66778889999999999999999998765 33332 2233322 33567999999999999998 888765433
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHH
Q 039792 668 GVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLS 740 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~ 740 (819)
..+ +.+.++++..... ...+...|..+-.++...+ +.+.|...+++++++.|.+|.++.-++
T Consensus 410 ~~~---------~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g-~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 KMK---------DKLQKIAKMRLSK-NGADSEALHVLAFLQELNE-KMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHH---------HHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHH-HCC------------------------
T ss_pred HHH---------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 222 3344455555541 1234556766666665443 889999999999999999988776554
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=9.7e-12 Score=124.31 Aligned_cols=223 Identities=10% Similarity=0.026 Sum_probs=136.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc--chhhHHHHHHH
Q 039792 428 SYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL--DVFAGSALIDA 505 (819)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~ 505 (819)
.|..+...+...|++++|+..|++..+.. .+...+..+...+...|+++.|...+..+.+..... +..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 45555666666666667766666665544 444445445555555555555555554444322110 000
Q ss_pred HHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 039792 506 YSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFH 585 (819)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 585 (819)
.....|..+...|...|++++|+..|++.... .|+. ..+...|+++.|...+
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 00234444555556666666666666666553 3332 2234455666777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 586 NHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
+.+.+..+. +...+..+...|...|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+
T Consensus 129 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~ 205 (258)
T 3uq3_A 129 EAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPN 205 (258)
T ss_dssp HHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHH
Confidence 666665432 55566677777777777777777777654 44566777788888888888888888888877 4565
Q ss_pred -chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 663 -YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 663 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..++..+..++...|++++|.+.+++..+
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35677777788888888888888887766
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=1.3e-11 Score=124.77 Aligned_cols=219 Identities=12% Similarity=-0.050 Sum_probs=167.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 039792 538 TQQLENEEAIKLYLELLLSQQR---PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLE 614 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 614 (819)
...|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+..+. +...+..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 3457788888888888875321 13566777888888889999999999888887654 6778888888999999999
Q ss_pred HHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 615 DAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 615 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+|.+.|++.. +.+...|..+...|...|++++|++.|+++.+ +.|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999888766 44677888888999999999999999999988 677776666666666778899999999988776
Q ss_pred cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCC----CchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 692 FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPM----DSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 692 ~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.. .++...+......+++. +.+.+...++++++..|. ++..+..++.+|...|++++|...+++..+.
T Consensus 173 ~~-~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-DKEQWGWNIVEFYLGNI--SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-CCCSTHHHHHHHHTTSS--CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CcchHHHHHHHHHHHhc--CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 21 23344444443444443 567778888888877764 3678889999999999999999999988754
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=7.1e-12 Score=126.79 Aligned_cols=221 Identities=6% Similarity=-0.108 Sum_probs=156.7
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMY 607 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 607 (819)
..|..+...|...|++++|+..|++..... +.+..++..+...+...|++++|...++.+++..+. +...+..+..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHH
Confidence 455666677777777888888887777642 335677777888888888888888888888877544 567788888888
Q ss_pred HhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHH
Q 039792 608 AKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
.+.|++++|.+.|+++. .|+...+...+..+...|++++|+..+++.... .|+......++..+...+..++|...
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNIVEFYLGNISEQTLMER 199 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHHHHHHHTTSSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888888888766 444444444445556678999999999888773 45444444577778888888999988
Q ss_pred HHHHHhcCC--ccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 039792 686 FQSMAGFGI--EPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVR 756 (819)
Q Consensus 686 ~~~m~~~g~--~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 756 (819)
+++...... .|+ ...+..+...+.+.+ +.+.|...++++++++|++...+ +.++...|++++|.+-+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLG-DLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 888765221 111 345555556555443 88999999999999999875544 66778888888887765
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=1.6e-10 Score=116.76 Aligned_cols=221 Identities=12% Similarity=-0.048 Sum_probs=154.1
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN----LGSLKHGQQFHNHLIKLGLDFDSFITSALI 604 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 604 (819)
++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4445556666667777777777776652 234555666666666 777777777777777665 556666777
Q ss_pred HHHHh----cCCHHHHHHHHhcCC-CCChHhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc
Q 039792 605 DMYAK----CGSLEDAYETFGSTT-WKDVACWNSMICTNAH----HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH 675 (819)
Q Consensus 605 ~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 675 (819)
.+|.. .|++++|.+.|++.. ..+..++..+...|.. .|++++|++.|++..+.+ +...+..+...+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 77777 777777777777655 3456677777777777 778888888888877744 44556666666766
Q ss_pred ----cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhc----ccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh--
Q 039792 676 ----AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR----NVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC-- 745 (819)
Q Consensus 676 ----~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r----~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 745 (819)
.+++++|...|++..+.+. ...+..+..+|.+ .. +.+.|...++++++..| +..+..|+.+|..
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKD---SPGCFNAGNMYHHGEGATK-NFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCSSCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 7788888888887776532 2344444444433 22 77788888888888765 6788889999998
Q ss_pred --CCCchHHHHHHHHHHhCCC
Q 039792 746 --NSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 746 --~g~~~~a~~~~~~m~~~g~ 764 (819)
.|++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 8999999999988877653
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.37 E-value=7.5e-11 Score=128.33 Aligned_cols=367 Identities=12% Similarity=0.013 Sum_probs=209.5
Q ss_pred cCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCH---HHHHHHHHhcCCCCcchHHHHHHHHHhcC-----Ch
Q 039792 371 GSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSL---TEARKVFDVMADRNVVSYNAMIEGYSKEE-----KL 442 (819)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g-----~~ 442 (819)
.+.|++++|.+++....+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+ ++
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 34455555555555555544 223334455555556666 67777777766555556666666444444 56
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCch---HhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCC----hHHH
Q 039792 443 SEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSL---ESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFS----NKDA 515 (819)
Q Consensus 443 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~----~~~A 515 (819)
++|+..|++..+.|... .+..+-..+...+.. ..+.+.+......| ++.....|...|...+. .+.+
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 77777777777655433 333333334333332 23333344344444 35556667777777663 4455
Q ss_pred HHHHHhcCCCCeeehhhhHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHH
Q 039792 516 RLVFDEMNQRDIVVWNAMLLGYTQQL---ENEEAIKLYLELLLSQQRPNEFTFAALITAASNL----GSLKHGQQFHNHL 588 (819)
Q Consensus 516 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~~ 588 (819)
..+++.....++..+..|...|...| +.++|++.|++..+.| .++...+..+-..+... +++++|..+++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 56666666666668888888888888 8888888888888776 44555445555556544 6888888888887
Q ss_pred HHhCCCCchhHHHHHHHH-H--HhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCC
Q 039792 589 IKLGLDFDSFITSALIDM-Y--AKCGSLEDAYETFGSTT-WKDVACWNSMICTNAHHG-----EPMKALLLFREMIIEGL 659 (819)
Q Consensus 589 ~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~ 659 (819)
. .| ++..+..|..+ | ...|+.++|.+.|++.. ..+..++..|...|. .| ++++|++.|++.. .|
T Consensus 244 a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g- 316 (452)
T 3e4b_A 244 A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR- 316 (452)
T ss_dssp G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT-
T ss_pred c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC-
Confidence 7 33 55666667776 4 46788888888888766 446677777777776 45 8888888888875 22
Q ss_pred CCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc---cchhhhHHHHHHHHHccCCCC
Q 039792 660 EPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN---VWNVELGRYAAEMAISIDPMD 732 (819)
Q Consensus 660 ~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~---~w~~~~a~~~~~~~~~~~p~~ 732 (819)
+......|...|.. ..+.++|...|++..+.|... ....+-.+|-.. .-|.+.|...++++.+..+.
T Consensus 317 --~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~- 390 (452)
T 3e4b_A 317 --EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS---ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP- 390 (452)
T ss_dssp --CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT---HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-
T ss_pred --CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-
Confidence 34566666666665 338888888888887766422 223333333211 01778888888888876543
Q ss_pred chhHHHHHHHHHh--CCCchHHHHHHHHHHh
Q 039792 733 SGSYTLLSNTFAC--NSMWADAKQVRKKMDL 761 (819)
Q Consensus 733 ~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~ 761 (819)
..-..+..+... .++.++|.++.++.++
T Consensus 391 -~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 391 -EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344445444332 2455566666555443
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=2.6e-11 Score=127.77 Aligned_cols=244 Identities=9% Similarity=0.040 Sum_probs=195.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 496 VFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLE-NEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
...+..+...+.+.|++++|...|++..+ | +...|+.+...+...|+ +++|+..|++..... +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44566677778888889999988887764 3 56688888888999996 999999999988752 3366788888888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHh-CCChHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAH-HGEPMKA 647 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-~g~~~~A 647 (819)
+...|++++|...++.+++..+. +...|..+..++.+.|++++|.+.|+++. ..+...|+.+...+.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999998766 78888999999999999999999998877 4567889999999988 6666777
Q ss_pred -----HHHHHHHHHcCCCCCc-hhHHHHHHHHHccC--CHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhccc------
Q 039792 648 -----LLLFREMIIEGLEPNY-ITFVGVLSACSHAG--LIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNV------ 712 (819)
Q Consensus 648 -----~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~------ 712 (819)
++.|++.++ +.|+. ..|..+...+.+.| ++++|.+.+.++ + ..|+ ...+..+.++|.+.+
T Consensus 255 ~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 255 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 588999988 78865 57888888888888 589999988887 2 3444 455667777776531
Q ss_pred -c-hhhhHHHHHHHH-HccCCCCchhHHHHHHHHHhC
Q 039792 713 -W-NVELGRYAAEMA-ISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 713 -w-~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~~ 746 (819)
- ..+.|...++++ ++++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 0 247889999999 999999999999888876543
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.37 E-value=5.3e-11 Score=118.59 Aligned_cols=195 Identities=11% Similarity=-0.001 Sum_probs=112.0
Q ss_pred eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 527 IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
...|..+...|...|++++|.+.|+++.... +.+...+..+...+...|++++|...++.+.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3455556666666666666666666665542 234555555666666666666666666666655433 44555555555
Q ss_pred HHhcCCHHHHHHHHhcCCC----C-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHH
Q 039792 607 YAKCGSLEDAYETFGSTTW----K-DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIE 680 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 680 (819)
|.+.|++++|.+.|+++.. | +...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHH
Confidence 6666666666655555432 1 233455555555555555555555555555 2343 234444555555555555
Q ss_pred HHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 681 DGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 681 ~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+|..+ ++++++..|+++..+..++.+|...|++++|.+.++++.
T Consensus 193 ~A~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 193 PARQY------------------------------------YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHH------------------------------------HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH------------------------------------HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55544 555555666666667777777777777777777777665
Q ss_pred h
Q 039792 761 L 761 (819)
Q Consensus 761 ~ 761 (819)
+
T Consensus 237 ~ 237 (252)
T 2ho1_A 237 R 237 (252)
T ss_dssp H
T ss_pred H
Confidence 4
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=1.8e-11 Score=121.17 Aligned_cols=211 Identities=11% Similarity=0.091 Sum_probs=119.8
Q ss_pred eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 527 IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
...|..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...++.+.+..+. +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 445666666777777788888877777764 2335666777777777777888888877777776543 56666777777
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 682 (819)
|...|++++|.+.|+++. +.+...|..+...|...|++++|++.++++.+ ..|+ ...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776654 34566677777777777777777777777776 4453 34566666677777777777
Q ss_pred HHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 683 LDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 683 ~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
...++++.+.. ..+...+..+...+.+.+ +.+.|...++++++++|+++..+..++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKE-NREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 77766665421 011223333433333322 555555555555556665555555554443
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=6.4e-11 Score=128.87 Aligned_cols=377 Identities=11% Similarity=-0.007 Sum_probs=192.5
Q ss_pred hhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCCh---HHHHHHHhcccCCCcccHHHHHHHHHcCC-----C
Q 039792 269 CSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRV---KMARRLFDEIEVKNIISWTTLIGGYMQNS-----F 340 (819)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 340 (819)
+.+.|++++|.+++....+.| ++..+..|-.+|...|+. ++|...|++..+.+...+..|...+...+ +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 344455556666665555554 223333444555556666 77877777776556666666666455554 5
Q ss_pred hhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchh---hHHHHHHHHHHcCCCCChhHHhHHhhhhhcCC----CHHH
Q 039792 341 DREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALE---QGRQVHAYSFKANIESDNFVKNSLVDMYAKCD----SLTE 413 (819)
Q Consensus 341 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~ 413 (819)
+++|+..|++..+.|.. ..+..+-..+...+..+ .+.+.+......|. ......|...|...+ ..+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHH
Confidence 67888888887775432 24444444444333322 23333433333332 334444555555555 3444
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHh
Q 039792 414 ARKVFDVMADRNVVSYNAMIEGYSKEE---KLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY 490 (819)
Q Consensus 414 A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 490 (819)
+..+++.....+...+..|...|...| +.++|++.|++..+.|...
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~------------------------------- 212 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT------------------------------- 212 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-------------------------------
Confidence 555566655555567777777777777 6677777776665554221
Q ss_pred CCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 491 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
...+..|..+|... ....+++++|++.|++.. .| +...+..+-.
T Consensus 213 -----a~~~~~Lg~~y~~g---------------------------~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~ 256 (452)
T 3e4b_A 213 -----AQRVDSVARVLGDA---------------------------TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQ 256 (452)
T ss_dssp -----HHHHHHHHHHHTCG---------------------------GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHH
T ss_pred -----HHHHHHHHHHHhCC---------------------------CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHH
Confidence 11112222222211 001134555555555544 22 2222333333
Q ss_pred H-H--hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-----CHHHHHHHHhcCCCCChHhHHHHHHHHHh--
Q 039792 571 A-A--SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG-----SLEDAYETFGSTTWKDVACWNSMICTNAH-- 640 (819)
Q Consensus 571 ~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~li~~~~~-- 640 (819)
. + ...+++++|...++...+.| +...+..|..+|. .| +.++|.+.|++....+...+..|...|..
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCC
Confidence 2 2 34666777777777766655 4555666666666 44 77888888877664455666666666665
Q ss_pred --CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccch
Q 039792 641 --HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWN 714 (819)
Q Consensus 641 --~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~ 714 (819)
..+.++|+..|++..+.| +......|...|.. ..+.++|...|+...+.|..........+...+... +
T Consensus 333 g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~--~ 407 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPA--Q 407 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHH--H
T ss_pred CCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHH--H
Confidence 337888888888887654 23345555555553 457888888888887777544433344443333322 6
Q ss_pred hhhHHHHHHHHHccCC
Q 039792 715 VELGRYAAEMAISIDP 730 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p 730 (819)
...+...+++..+..|
T Consensus 408 ~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 408 RAEGQRLVQQELAARG 423 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6677777776666543
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.34 E-value=2.3e-11 Score=118.05 Aligned_cols=193 Identities=12% Similarity=-0.051 Sum_probs=144.2
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 494 LDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 494 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4556677777888888888888888887754 245677788888889999999999998888752 335667778888
Q ss_pred HHhcc-----------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHH
Q 039792 571 AASNL-----------GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICT 637 (819)
Q Consensus 571 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 637 (819)
.+... |++++|...++..++..+. +...+..+..+|...|++++|.+.|++.. ..+...|..+...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 88888 9999999999999888765 67788888999999999999999988654 2667788889999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
|...|++++|+..|++..+ +.|+. ..+..+..++...|++++|++.|++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999988 67865 567888888999999999998887754
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.33 E-value=1.5e-10 Score=112.72 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=89.9
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
.|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34445555556666666666666655432 233455555556666666666666666666655433 4455555666666
Q ss_pred hc-CCHHHHHHHHhcCCC----C-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHH
Q 039792 609 KC-GSLEDAYETFGSTTW----K-DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIED 681 (819)
Q Consensus 609 ~~-g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 681 (819)
.. |++++|.+.|+++.. | +...|..+...|...|++++|+..|+++.+ ..|+ ...+..+..++...|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHH
Confidence 66 666666666655432 1 134555566666666666666666666665 3443 3445555556666666666
Q ss_pred HHHHHHHHHh
Q 039792 682 GLDHFQSMAG 691 (819)
Q Consensus 682 a~~~~~~m~~ 691 (819)
|..+++++.+
T Consensus 166 A~~~~~~~~~ 175 (225)
T 2vq2_A 166 ADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=3.5e-11 Score=126.73 Aligned_cols=225 Identities=9% Similarity=-0.015 Sum_probs=189.0
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS-LKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
..|+.+...+...|++++|++.|++.+... +-+...|..+..++...|+ +++|...++.+++..+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 457778888999999999999999999752 3356778888889999996 99999999999998876 88899999999
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHc-cCCHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSH-AGLIED 681 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~-~g~~~~ 681 (819)
|.+.|++++|...|+++. ..+...|..+...+...|++++|++.|+++++ +.|+. ..|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999877 56788999999999999999999999999999 78865 689999999998 666577
Q ss_pred H-----HHHHHHHHhcCCccC-chHHHHHHHHhhcccc-hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCC-------
Q 039792 682 G-----LDHFQSMAGFGIEPG-MEHYASVVSLLGRNVW-NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNS------- 747 (819)
Q Consensus 682 a-----~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------- 747 (819)
| ++.+++.+. +.|+ ...|..+..+|.+.+. +.+.+...++++ +.+|+++..+..|+.+|...|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 588888877 3343 3455555666655322 577888888888 999999999999999999975
Q ss_pred -C-chHHHHHHHHH
Q 039792 748 -M-WADAKQVRKKM 759 (819)
Q Consensus 748 -~-~~~a~~~~~~m 759 (819)
+ .++|.++++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 2 58999999987
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.32 E-value=1.8e-10 Score=114.76 Aligned_cols=193 Identities=11% Similarity=-0.087 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039792 496 VFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAA 572 (819)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 572 (819)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57788889999999999999999998764 356788889999999999999999999998763 34678888899999
Q ss_pred hccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDF-DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKAL 648 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 648 (819)
...|++++|..+++.+.+.+..| +...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998832333 56788889999999999999999999866 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 649 LLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 649 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..++++.+ ..|+. ..+..+...+...|++++|.++++++.+
T Consensus 196 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999987 56654 5677888889999999999999998877
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.31 E-value=8.7e-11 Score=118.55 Aligned_cols=229 Identities=11% Similarity=-0.029 Sum_probs=178.6
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFD--SFITSALID 605 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~ 605 (819)
..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.+..++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778899999999999999998753 22444788888899999999999999999998442222 334888999
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHH
Q 039792 606 MYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIED 681 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 681 (819)
.|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ +.|+. ..+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 45678999999999999999999999999987 57865 456666635555679999
Q ss_pred HHHHHHHHHhcCCccC-chHHHHHHHHhhcccch---hhhHHHHHHHHHccC---CCC-----chhHHHHHHHHHhCCCc
Q 039792 682 GLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWN---VELGRYAAEMAISID---PMD-----SGSYTLLSNTFACNSMW 749 (819)
Q Consensus 682 a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~y~~~g~~ 749 (819)
|.+.|+++.+. .|+ ...+..+...+.... + .+.|...+++++++. |+. ...|..++.+|...|++
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQD-PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHS-TTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999882 233 233333333333221 3 666888888888886 442 25888999999999999
Q ss_pred hHHHHHHHHHHhC
Q 039792 750 ADAKQVRKKMDLD 762 (819)
Q Consensus 750 ~~a~~~~~~m~~~ 762 (819)
++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.31 E-value=1.8e-10 Score=112.18 Aligned_cols=199 Identities=9% Similarity=-0.021 Sum_probs=169.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT 637 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 637 (819)
+...+..+...+...|++++|...++.+.+..+. +...+..+...|...|++++|.+.|+++. +.+...|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 4566778888899999999999999999987654 67889999999999999999999999876 4577889999999
Q ss_pred HHhC-CChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchh
Q 039792 638 NAHH-GEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNV 715 (819)
Q Consensus 638 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~ 715 (819)
|... |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++++.+.. ..+...+..+...+.+.+ +.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG-QL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT-CH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC-CH
Confidence 9999 999999999999998444455 3578888899999999999999999998732 112455666666665543 88
Q ss_pred hhHHHHHHHHHccCC-CCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 716 ELGRYAAEMAISIDP-MDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 716 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+.|...++++++..| +++..+..++.+|...|++++|...++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999988753
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.31 E-value=5.1e-11 Score=117.85 Aligned_cols=198 Identities=11% Similarity=0.015 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHH
Q 039792 560 PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMIC 636 (819)
Q Consensus 560 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 636 (819)
....++..+...+...|+++.|..+++.+.+..+. +...+..+...|.+.|++++|.+.|+++. +.+...|..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34566777788889999999999999999987654 68888999999999999999999999866 457788999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchh
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNV 715 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~ 715 (819)
.|...|++++|++.++++.+ ..|+ ...+..+...+...|++++|..+++++.+.. ..+...+..+...+.+.+ +.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEG-ML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CC
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcC-CH
Confidence 99999999999999999998 4564 4678888899999999999999999998732 123445666666665443 88
Q ss_pred hhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 716 ELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 716 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+.|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999998764
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=5.9e-10 Score=112.51 Aligned_cols=226 Identities=11% Similarity=-0.026 Sum_probs=166.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCCC-CeeehhhhHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQR-DIVVWNAMLLGYTQ----QLENEEAIKLYLELLLSQQRPNEFTFAALI 569 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 569 (819)
++..+..+...|...|++++|...|++..++ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3445556666777777777777777766553 44566667777777 888888888888887765 667777777
Q ss_pred HHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCChHhHHHHHHHHHh
Q 039792 570 TAASN----LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK----CGSLEDAYETFGSTT-WKDVACWNSMICTNAH 640 (819)
Q Consensus 570 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 640 (819)
..+.. .+++++|...++...+.+ +...+..+..+|.+ .|++++|.+.|++.. ..+..++..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 77777 888888888888888765 66777788888888 888888888887765 3356677778788877
Q ss_pred ----CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhc--
Q 039792 641 ----HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR-- 710 (819)
Q Consensus 641 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r-- 710 (819)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+. ...+..+..+|-+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGE 232 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCC
Confidence 888888888888888743 34567777778888 8888888888888877543 3344444444443
Q ss_pred --ccchhhhHHHHHHHHHccCCCCc
Q 039792 711 --NVWNVELGRYAAEMAISIDPMDS 733 (819)
Q Consensus 711 --~~w~~~~a~~~~~~~~~~~p~~~ 733 (819)
.. +.+.|...+++++++.|+++
T Consensus 233 ~~~~-~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 233 GVTR-NEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSSC-CSTTHHHHHHHHHHHTCHHH
T ss_pred Cccc-CHHHHHHHHHHHHHcCCHHH
Confidence 22 77888888888888887643
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=3.5e-10 Score=106.42 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=99.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
+..+|..+...|.+.|++++|.+.|++.. +.+..+|..+...|...|++++|+..+++... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 34455555555555555555555555543 33445555555666666666666666666555 34433 34444555
Q ss_pred HHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCch
Q 039792 672 ACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWA 750 (819)
Q Consensus 672 a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 750 (819)
.+...+++++|.+.+.+... ... +...+..+...+.+.+ +.+.|...++++++++|+++.+|..++.+|...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~--~~~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV--YADAYYKLGLVYDSMG-EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHhC-CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 55566666666666665554 211 1223333333333222 5666666777888889999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 039792 751 DAKQVRKKMDLD 762 (819)
Q Consensus 751 ~a~~~~~~m~~~ 762 (819)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.26 E-value=1.9e-11 Score=131.91 Aligned_cols=229 Identities=12% Similarity=0.012 Sum_probs=126.9
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCchhH
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLLS----QQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKL----G-LDFDSFI 599 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~ 599 (819)
|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|...+..+.+. + ......+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444455555555555555544321 1111 2234445555555566666666655555432 1 0112335
Q ss_pred HHHHHHHHHhcCC-----------------HHHHHHHHhcCCC-----C----ChHhHHHHHHHHHhCCChHHHHHHHHH
Q 039792 600 TSALIDMYAKCGS-----------------LEDAYETFGSTTW-----K----DVACWNSMICTNAHHGEPMKALLLFRE 653 (819)
Q Consensus 600 ~~~li~~~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 653 (819)
+..+...|...|+ +++|.+.+++... . ...+|..+...|...|++++|++.+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 6666665554320 1 123556666666677777777777666
Q ss_pred HHHcCCCC---C----chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC----chHHHHHHHHhhcccchhhhHHHH
Q 039792 654 MIIEGLEP---N----YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG----MEHYASVVSLLGRNVWNVELGRYA 721 (819)
Q Consensus 654 m~~~g~~p---~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~----~~~y~~li~~l~r~~w~~~~a~~~ 721 (819)
..+ +.| + ..++..+...+...|++++|...+++... ..-..+ ...+..+...+.+.+ +.+.|...
T Consensus 249 al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~ 325 (411)
T 4a1s_A 249 RLR--IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLH-EFNTAIEY 325 (411)
T ss_dssp HHH--HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHH--HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 654 222 1 12456666667777777777777766655 111111 123333333333222 66666666
Q ss_pred HHHHHccCCCC------chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 722 AEMAISIDPMD------SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 722 ~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+++++++.++. ...|..++.+|...|++++|.+.+++..+
T Consensus 326 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666664432 44888999999999999999999988765
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=8e-11 Score=128.96 Aligned_cols=209 Identities=11% Similarity=0.026 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 039792 542 ENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSL-KHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETF 620 (819)
Q Consensus 542 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 620 (819)
..++++..+++.... .+.+...+..+..++...|++ ++|...++.+++..+. +...+..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356777777766543 234677888888889999999 9999999999988755 6788999999999999999999999
Q ss_pred hcCC--CCChHhHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc--------CCHH
Q 039792 621 GSTT--WKDVACWNSMICTNAHH---------GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA--------GLIE 680 (819)
Q Consensus 621 ~~~~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~ 680 (819)
++.. .|+...|..+...|... |++++|++.|++.++ +.|+. ..|..+..+|... |+++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8866 56778888899999999 999999999999998 67864 6788888899888 9999
Q ss_pred HHHHHHHHHHhcCCcc----CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 039792 681 DGLDHFQSMAGFGIEP----GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVR 756 (819)
Q Consensus 681 ~a~~~~~~m~~~g~~p----~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 756 (819)
+|...|++..+. .| +...|..+..+|.+.+ +.+.|...++++++++|+++.++..++.++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEE-SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999883 23 4556666666665544 8899999999999999999999999999999999999998754
Q ss_pred H
Q 039792 757 K 757 (819)
Q Consensus 757 ~ 757 (819)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=3.4e-11 Score=124.14 Aligned_cols=233 Identities=11% Similarity=0.032 Sum_probs=144.9
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-C
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLS-------QQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL------GL-D 594 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~ 594 (819)
+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++.+++. +- .
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444555555666666666666655541 12223345666666677777777777777766653 11 2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----ChHhHHHHHHHHHhCCChHHHHHHHHHHHHc------
Q 039792 595 FDSFITSALIDMYAKCGSLEDAYETFGSTTW-------K----DVACWNSMICTNAHHGEPMKALLLFREMIIE------ 657 (819)
Q Consensus 595 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 657 (819)
.....+..+...|...|++++|.+.|++... + ....|..+...|...|++++|++.|+++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2345667777777888888888777765441 1 2346777888888889999999988888763
Q ss_pred CCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhc-------CCccCchHHHHHHHHhhcc------cchhhhHHHHHH
Q 039792 658 GLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGF-------GIEPGMEHYASVVSLLGRN------VWNVELGRYAAE 723 (819)
Q Consensus 658 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~y~~li~~l~r~------~w~~~~a~~~~~ 723 (819)
+..|+. .++..+..++...|++++|.++++++.+. ...|...........+... ......+...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 224433 46778888899999999999999888762 2222222222111111111 014445556677
Q ss_pred HHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 724 MAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 724 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++....|.++..+..++.+|...|++++|.+.+++..+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77778888899999999999999999999999998765
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.23 E-value=6.6e-11 Score=127.21 Aligned_cols=295 Identities=12% Similarity=-0.017 Sum_probs=145.7
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhHHHHHHHHhhccCchHhHHHHHHHHHHh----CCc-cch
Q 039792 426 VVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPG----LLTFVSLLGLSSSVFSLESSKQIHGLIIKY----GVF-LDV 496 (819)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----g~~-~~~ 496 (819)
...+......+...|++++|+..|++..+... .+ ...+..+...+...|+++.|...+....+. +.. ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34556667778888888899888888876421 12 134555566666677777777766665432 111 113
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----eeehhhhHHHHHhcCC-------------HHHHHHHHHHHH
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQ-----RD----IVVWNAMLLGYTQQLE-------------NEEAIKLYLELL 554 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~-------------~~~A~~~~~~m~ 554 (819)
.++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~----- 162 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA----- 162 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH-----
Confidence 3444555555555555555555554432 11 1234444444444444 0000000
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----
Q 039792 555 LSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL----GLD-FDSFITSALIDMYAKCGSLEDAYETFGSTT----- 624 (819)
Q Consensus 555 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----- 624 (819)
++.|...+....+. +.. ....++..+...|...|++++|.+.|++..
T Consensus 163 -----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 163 -----------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 44444444433321 100 012234445555555555555555554433
Q ss_pred CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCC
Q 039792 625 WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGL-EPN----YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGI 694 (819)
Q Consensus 625 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~ 694 (819)
.++ ..+|..+...|...|++++|+..+++..+..- .++ ..++..+...+...|++++|.+++++..+ ..-
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 12455555555566666666666655543100 001 22445555556666666666666665554 111
Q ss_pred ccC----chHHHHHHHHhhcccchhhhHHHHHHHHHccC------CCCchhHHHHHHHHHhCCCch
Q 039792 695 EPG----MEHYASVVSLLGRNVWNVELGRYAAEMAISID------PMDSGSYTLLSNTFACNSMWA 750 (819)
Q Consensus 695 ~p~----~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~ 750 (819)
.++ ...+..+...+.+.+ +.+.|...+++++++. |....++..++.+|...|+..
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 111 112222333322222 5555555555555552 223557778888888888664
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=9.1e-10 Score=113.29 Aligned_cols=210 Identities=14% Similarity=0.103 Sum_probs=156.8
Q ss_pred HHHHHHHHhcCC---C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCChHHHHHHHH
Q 039792 513 KDARLVFDEMNQ---R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN-EF-TFAALITAASNLGSLKHGQQFHN 586 (819)
Q Consensus 513 ~~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~ 586 (819)
++|..+|++..+ | +...|..++..+.+.|++++|.++|++..+ +.|+ .. .|..+...+.+.|++++|..+++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 788888887654 3 345788888888888999999999998887 3454 32 78888888888899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHH-hcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCC
Q 039792 587 HLIKLGLDFDSFITSALIDMYA-KCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEG-LEP 661 (819)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 661 (819)
.+++..+. +...|........ ..|+.++|.++|++.. +.+...|..++..+...|+.++|..+|++.++.. +.|
T Consensus 159 ~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 88876543 4555554444432 3699999999998876 4577889999999999999999999999999853 466
Q ss_pred C--chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHH
Q 039792 662 N--YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTL 738 (819)
Q Consensus 662 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~ 738 (819)
+ ...|..++......|+.++|..+++++.+ ..-.++......+.+. .+.++++|+++..++.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~r---------------~~~l~~~P~~~~~ln~ 302 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDR---------------YKFMDLYPCSASELKA 302 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTT---------------TCBTTBCSSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchHHHHHHH---------------HHhcccCCCCHHHHHh
Confidence 4 34688888888889999999999999988 5444433322222221 2566789999888877
Q ss_pred HH
Q 039792 739 LS 740 (819)
Q Consensus 739 l~ 740 (819)
|+
T Consensus 303 lg 304 (308)
T 2ond_A 303 LG 304 (308)
T ss_dssp TT
T ss_pred cC
Confidence 65
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.20 E-value=4.1e-08 Score=110.38 Aligned_cols=214 Identities=10% Similarity=-0.012 Sum_probs=121.1
Q ss_pred chhhHHHHHHHHHhcCChHHHH-HHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC
Q 039792 495 DVFAGSALIDAYSKCFSNKDAR-LVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQ---------QRPN 561 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~ 561 (819)
...+|-..+..+.+.|+.++|. .+|++... | +...|-..+...-+.|++++|.++|+++.... -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 3444444444444555555553 55554432 2 22234444455555566666666665555321 0131
Q ss_pred ------------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcCC---C
Q 039792 562 ------------EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG-SLEDAYETFGSTT---W 625 (819)
Q Consensus 562 ------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~ 625 (819)
...|...+....+.|.++.|+.++..+++........+|...+.+-.++| +.+.|.++|+... +
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 23466666666667777777777777776511122334433333334444 4777777777665 4
Q ss_pred CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHH
Q 039792 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYAS 703 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 703 (819)
.+...|...+.-....|+.+.|..+|++.+.....|. ...|...+.--...|+.+.+..+.+++.+. .|+......
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~ 579 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEE 579 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHH
Confidence 4566677777766777778888888887776322111 235666666666678888888888777762 244445555
Q ss_pred HHHHhhc
Q 039792 704 VVSLLGR 710 (819)
Q Consensus 704 li~~l~r 710 (819)
+++-|+-
T Consensus 580 f~~ry~~ 586 (679)
T 4e6h_A 580 FTNKYKV 586 (679)
T ss_dssp HHHHTCB
T ss_pred HHHHhcC
Confidence 5666653
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.19 E-value=7.3e-11 Score=122.99 Aligned_cols=132 Identities=10% Similarity=-0.038 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC----ch
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGL-EPN----YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG----ME 699 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~----~~ 699 (819)
++..+...|...|++++|++.+++..+..- .++ ..++..+...+...|++++|..++++..+ ..-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 445555555555666666655555543100 011 11455555555566666666666655544 111111 12
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHccCCCC------chhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 700 HYASVVSLLGRNVWNVELGRYAAEMAISIDPMD------SGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 700 ~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.+..+...+.+.+ +.+.|...+++++++.|.. ...+..++.+|...|++++|.+.+++..+.
T Consensus 265 ~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2222333332222 5555555555555554332 447889999999999999999999988764
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.18 E-value=1e-10 Score=125.76 Aligned_cols=260 Identities=11% Similarity=0.022 Sum_probs=177.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC--CC-----eeehhhhHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQ--RD-----IVVWNAMLLGYTQQLENEEAIKLYLELLLS----QQRPN-EFTFAAL 568 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l 568 (819)
.....+.+.|++++|...|++..+ |+ ...|..+...|...|++++|...|++.... +-.|. ..++..+
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 344445555555555555554432 21 124555566666667777777766665421 11221 3456667
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCC--------------------HHHHHHHHhcC
Q 039792 569 ITAASNLGSLKHGQQFHNHLIKLGLD-----FDSFITSALIDMYAKCGS--------------------LEDAYETFGST 623 (819)
Q Consensus 569 l~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~ 623 (819)
...+...|+++.|...+..+.+.... ....++..+...|...|+ +++|.+.+++.
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77778888888888888776653111 114477788888999999 88888888764
Q ss_pred C-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----chhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 624 T-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGL-EPN----YITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 624 ~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
. .++ ..+|..+...|...|++++|+..+++..+..- .++ ..++..+...+...|++++|..++++.
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3 122 34688889999999999999999999876210 122 136888888999999999999999998
Q ss_pred Hh-cCCccC----chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC------chhHHHHHHHHHhCCCchHHHHHHHH
Q 039792 690 AG-FGIEPG----MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD------SGSYTLLSNTFACNSMWADAKQVRKK 758 (819)
Q Consensus 690 ~~-~g~~p~----~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~ 758 (819)
.. ..-.++ ...+..+...+.+.+ +.+.|...+++++++.+.. ...+..++.+|...|++++|.+.+++
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76 221222 234445555554433 8899999999999886654 56889999999999999999999988
Q ss_pred HHh
Q 039792 759 MDL 761 (819)
Q Consensus 759 m~~ 761 (819)
..+
T Consensus 333 al~ 335 (406)
T 3sf4_A 333 HLE 335 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.17 E-value=2.1e-10 Score=123.70 Aligned_cols=195 Identities=16% Similarity=0.039 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC-----C----CeeehhhhHHHHHhcCC-----------------HHHHHHHH
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQ-----R----DIVVWNAMLLGYTQQLE-----------------NEEAIKLY 550 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 550 (819)
..+..+...|...|++++|...|++..+ . ...++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444555555556666665555554332 0 12244555555666666 66666666
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhcCCHHHHHHHH
Q 039792 551 LELLLS----QQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD-FD----SFITSALIDMYAKCGSLEDAYETF 620 (819)
Q Consensus 551 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~ 620 (819)
++..+. +..| ...++..+...+...|++++|...++...+.... .+ ...+..+...|...|++++|.+.|
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 554321 1111 1234555666666777777777777666543211 01 225566666777777777777766
Q ss_pred hcCCC-----CC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-chhHHHHHHHHHccCCHHHHHHHH
Q 039792 621 GSTTW-----KD----VACWNSMICTNAHHGEPMKALLLFREMIIE----GLEPN-YITFVGVLSACSHAGLIEDGLDHF 686 (819)
Q Consensus 621 ~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 686 (819)
++... .+ ..+|..+...|...|++++|.+.+++.++. +..+. ..++..+..+|...|++++|.+++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 65441 11 345666667777777777777777766542 10111 135566666677777777777777
Q ss_pred HHHHh
Q 039792 687 QSMAG 691 (819)
Q Consensus 687 ~~m~~ 691 (819)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=3.3e-09 Score=103.64 Aligned_cols=208 Identities=12% Similarity=0.016 Sum_probs=157.0
Q ss_pred CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039792 526 DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALID 605 (819)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 605 (819)
|+..|......+...|++++|++.|++..+...+++...+..+..++...|++++|...++..++..+. +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 344556667778888888888888888887654477777777888888899999999999998887655 6778888899
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCh-------HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--c-hhHHHHHHH
Q 039792 606 MYAKCGSLEDAYETFGSTT---WKDV-------ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN--Y-ITFVGVLSA 672 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~---~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~-~t~~~ll~a 672 (819)
.|.+.|++++|.+.|++.. +.+. ..|..+...+...|++++|++.|++.++ +.|+ . ..+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHH
Confidence 9999999999999998766 3344 4577888889999999999999999987 7787 4 467777777
Q ss_pred HHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 673 CSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
+... +..+++++...+ ..+...|......... +.+.|...++++++++|+++.+...|+.+...
T Consensus 163 ~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLA-SSNKEKYASEKAKADA---AFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHH-----HHHHHHHHGGGT-TTCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHH-----HHHHHHHHHhcc-cCCHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 7544 445556665532 1223344444332222 67899999999999999999999888877543
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=7.7e-10 Score=126.02 Aligned_cols=160 Identities=14% Similarity=0.227 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSA 672 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 672 (819)
...++.|...|.+.|++++|.+.|++.. +.+..+|+.|...|.+.|++++|++.|++.++ +.|+. ..|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4455566666666666666666666544 33455666666666666666666666666666 55654 456666666
Q ss_pred HHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchH
Q 039792 673 CSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWAD 751 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 751 (819)
+...|++++|++.|++.++. .|+ ...|..+..+|.+.+ +.+.|...++++++++|+++.+|..|+.+|...|+|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSG-NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 66677777777766666652 232 334444544444433 66777777888899999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 039792 752 AKQVRKKMDL 761 (819)
Q Consensus 752 a~~~~~~m~~ 761 (819)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.14 E-value=2.4e-09 Score=100.60 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=109.3
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMY 607 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 607 (819)
..|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|+++.|...+..+....+. +...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence 345556666666677777777777666542 224556666666677777777777777777666544 555666666777
Q ss_pred HhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHH
Q 039792 608 AKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGL 683 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 683 (819)
...++++.|.+.+++.. +.+...|..+...|...|++++|++.|++.++ +.|+. .+|..+..++.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 77777777777776554 44566777777777777788888888877777 56654 46777777777778777777
Q ss_pred HHHHHHHh
Q 039792 684 DHFQSMAG 691 (819)
Q Consensus 684 ~~~~~m~~ 691 (819)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777665
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.13 E-value=5.1e-10 Score=116.51 Aligned_cols=196 Identities=16% Similarity=0.068 Sum_probs=116.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----eeehhhhHHHHHhcCC--------------------HHHH
Q 039792 496 VFAGSALIDAYSKCFSNKDARLVFDEMNQ-----RD----IVVWNAMLLGYTQQLE--------------------NEEA 546 (819)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 546 (819)
..++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455566666666666666666655432 11 2255556666666666 6677
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHHHH
Q 039792 547 IKLYLELLLS----QQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD-----FDSFITSALIDMYAKCGSLEDA 616 (819)
Q Consensus 547 ~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A 616 (819)
.+.+++.... +..| ...++..+...+...|+++.|...++...+.... .....+..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666654421 1111 1234556666677777777777777766542111 0123566677777777777777
Q ss_pred HHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-chhHHHHHHHHHccCCHHHH
Q 039792 617 YETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIE----GLEPN-YITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 617 ~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a 682 (819)
.+.+++.. .++ ..++..+...|...|++++|...+++..+. +-.+. ..++..+...+...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 77776544 111 345666777777777777777777776652 11111 23566667777777777777
Q ss_pred HHHHHHHHh
Q 039792 683 LDHFQSMAG 691 (819)
Q Consensus 683 ~~~~~~m~~ 691 (819)
..++++..+
T Consensus 323 ~~~~~~a~~ 331 (338)
T 3ro2_A 323 MHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=5.6e-09 Score=107.36 Aligned_cols=216 Identities=9% Similarity=0.047 Sum_probs=115.4
Q ss_pred HHHHHHHHhcCC---CCeeehhhhHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 039792 513 KDARLVFDEMNQ---RDIVVWNAMLLGYT-------QQLEN-------EEAIKLYLELLLSQQRP-NEFTFAALITAASN 574 (819)
Q Consensus 513 ~~A~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 574 (819)
++|..+|++... .++..|..++..+. +.|+. ++|..+|++.... +.| +...|..+...+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 345555555443 23445555555443 23554 6666666666652 133 33456666666666
Q ss_pred cCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHH-hCCChHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSF-ITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNA-HHGEPMKALL 649 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~-~~g~~~~A~~ 649 (819)
.|++++|..+++.+++..+. +.. +|..++..+.+.|++++|..+|++.. +.+...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666664322 232 56666666666666666666666544 222333332222211 2466666666
Q ss_pred HHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhc-CCccC--chHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 650 LFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGF-GIEPG--MEHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 650 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~--~~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
+|++.++ ..|+. ..|..++..+.+.|++++|..+|++.... .+.|+ ...|..++..+.+.+ +.+.+..+.+++
T Consensus 191 ~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g-~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG-DLASILKVEKRR 267 (308)
T ss_dssp HHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 6666665 34543 45556666666666666666666666653 23442 233444443333222 555566666666
Q ss_pred HccCCCCc
Q 039792 726 ISIDPMDS 733 (819)
Q Consensus 726 ~~~~p~~~ 733 (819)
++..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 66666543
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.11 E-value=6.3e-10 Score=118.60 Aligned_cols=227 Identities=10% Similarity=-0.016 Sum_probs=156.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC------CchhHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQ-QRPN----EFTFAALITAASNLGSLKHGQQFHNHLIKLGLD------FDSFITS 601 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~ 601 (819)
....+...|++++|+..|++....- -.++ ..++..+...+...|+++.|...+....+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445667788888888887776421 0122 345677777778888888888888877653111 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC-----CCCh----HhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-chhHH
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT-----WKDV----ACWNSMICTNAHHGEPMKALLLFREMIIE----GLEPN-YITFV 667 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 667 (819)
.+...|...|++++|.+.|++.. .++. .+|..+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 78888888899998888887655 1222 36788888999999999999999988762 22244 35688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh-cCCccCc---hHHHHHHHHhhcccch---hhhHHHHHHHHHccCCCCchhHHHHH
Q 039792 668 GVLSACSHAGLIEDGLDHFQSMAG-FGIEPGM---EHYASVVSLLGRNVWN---VELGRYAAEMAISIDPMDSGSYTLLS 740 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~---~~y~~li~~l~r~~w~---~~~a~~~~~~~~~~~p~~~~~~~~l~ 740 (819)
.+...+...|++++|..++++..+ ..-.++. ..+..+..++...+ + .+.|...+++. ...|.....+..|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP-DEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 888899999999999999998876 2222222 22333444443322 3 55555555555 33444566888999
Q ss_pred HHHHhCCCchHHHHHHHHHHh
Q 039792 741 NTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 741 ~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.09 E-value=6.1e-09 Score=97.61 Aligned_cols=162 Identities=10% Similarity=-0.041 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSA 672 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 672 (819)
...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|.+.++++.+ ..|+ ...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 4556778888999999999999999877 34677888999999999999999999999988 4565 4678888889
Q ss_pred HHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHH
Q 039792 673 CSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADA 752 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 752 (819)
+...|++++|.++++++.... ..+...+..+...+.+.+ +.+.|...++++++..|+++..+..++.+|...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLG-RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998732 123445555555555443 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 039792 753 KQVRKKMDLD 762 (819)
Q Consensus 753 ~~~~~~m~~~ 762 (819)
.+.+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999988764
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.08 E-value=1.3e-07 Score=106.43 Aligned_cols=456 Identities=9% Similarity=-0.033 Sum_probs=251.7
Q ss_pred CchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCC---hHHHHH
Q 039792 239 RSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGR---VKMARR 315 (819)
Q Consensus 239 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 315 (819)
...+.+..|++-...+ +-|..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555555555443 347778888888888778888888888888776 45566777777777777777 888888
Q ss_pred HHhcccC-----CCcccHHHHHHHHHcCCCh----hH----HHHHHHHHHH-CCC-CCCc-chHHHHHHHhcC-------
Q 039792 316 LFDEIEV-----KNIISWTTLIGGYMQNSFD----RE----AMKLFTEMTR-SGW-KPDD-FACSSVLTSCGS------- 372 (819)
Q Consensus 316 ~~~~~~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~------- 372 (819)
+|++... +++..|...+.-..+.++. ++ ..++|+..+. -|. .|+. ..|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 8877652 5555666666544443332 22 3355555443 244 4433 222222222111
Q ss_pred --CcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 039792 373 --VEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFH 450 (819)
Q Consensus 373 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 450 (819)
.+..+.++.+|..++......-..+|......-.. . +..+-..++.- ....++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~-------------~---~~~~a~~~~~e--~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQD-------------V---NQLTARRHIGE--LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHH-------------H---CTTTHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh-------------c---CcchHHHHHHH--hhHHHHHHHHHHH
Confidence 12233444444444421111001111111100000 0 00000011110 0112333444444
Q ss_pred HHHh--CCCC---CCh-hHHHHHHHHhhccC-chHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcC-------ChHHHH
Q 039792 451 EMRV--GFVP---PGL-LTFVSLLGLSSSVF-SLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCF-------SNKDAR 516 (819)
Q Consensus 451 ~m~~--~g~~---p~~-~t~~~ll~~~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g-------~~~~A~ 516 (819)
++.. .++. |.. .+.. ....-..+ .......++...+. .--..+ ..+.+.
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql~lW~~yi~---------------fEk~~~~~l~~~~~~~Rv~ 329 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQLLIWLEWIR---------------WESDNKLELSDDLHKARMT 329 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHHHHHHHHHH---------------HHHTCTTCCCHHHHHHHHH
T ss_pred HHHHHHHhHhhccccccccch--hccCCCCchhHHHHHHHHHHHHH---------------HHHhCCccccchhhHHHHH
Confidence 4321 1111 000 0000 00000000 01111222222221 111110 012334
Q ss_pred HHHHhcCC---CCeeehhhhHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 039792 517 LVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAI-KLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLG 592 (819)
Q Consensus 517 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 592 (819)
.+|++... .+...|-..+.-+.+.|+.++|. ++|++.... ++.+...+...+......|+++.|..+++.+++..
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44554432 24567777777778888888997 999998864 44555566777888888999999999999888642
Q ss_pred C---------CC------------chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChHhHHHHHHHHHhC-CChHH
Q 039792 593 L---------DF------------DSFITSALIDMYAKCGSLEDAYETFGSTTWK----DVACWNSMICTNAHH-GEPMK 646 (819)
Q Consensus 593 ~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~-g~~~~ 646 (819)
. .| ...+|...++...+.|.++.|+.+|++.... ....|-..+..-.+. ++.+.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 0 12 2347888889888999999999999887522 233343332222333 55899
Q ss_pred HHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc--CchHHHHHHHHhhcccchhhhHHHHHH
Q 039792 647 ALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP--GMEHYASVVSLLGRNVWNVELGRYAAE 723 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p--~~~~y~~li~~l~r~~w~~~~a~~~~~ 723 (819)
|.++|+..++. .|+. ..+...+.-....|+.+.|..+|+........+ ....|...++.-.+.+ +.+.+..+.+
T Consensus 489 Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G-~~~~~~~v~~ 565 (679)
T 4e6h_A 489 ACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG-SLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC-CSHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 99999999984 5654 455677777778899999999999988743221 2345666665544433 7888999999
Q ss_pred HHHccCCCCchh
Q 039792 724 MAISIDPMDSGS 735 (819)
Q Consensus 724 ~~~~~~p~~~~~ 735 (819)
++.+..|+++..
T Consensus 566 R~~~~~P~~~~~ 577 (679)
T 4e6h_A 566 RFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHSTTCCHH
T ss_pred HHHHhCCCCcHH
Confidence 999999987543
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.06 E-value=1.2e-09 Score=119.72 Aligned_cols=190 Identities=11% Similarity=0.025 Sum_probs=154.8
Q ss_pred chhhHHHHHHHHHhcCCh-HHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSN-KDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
+...+..+...|...|++ ++|.+.|++..+ | +...|..+...|...|++++|++.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 455556666666677777 777777766543 2 4567888888889999999999999998874 577788888888
Q ss_pred HHhcc---------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--------CCHHHHHHHHhcCC--C----CC
Q 039792 571 AASNL---------GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC--------GSLEDAYETFGSTT--W----KD 627 (819)
Q Consensus 571 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~--~----~~ 627 (819)
.+... |++++|...++.+++..+. +...+..+..+|... |++++|.+.|++.. . .+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 88888 9999999999999988765 778888999999988 99999999998876 3 47
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
...|..+...|...|++++|++.|++..+ +.|+. ..+..+..++...|++++|.+.+.++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999998 67865 46888888899999999888765443
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.04 E-value=8.3e-09 Score=109.89 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=29.1
Q ss_pred hhhhhcCCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHH
Q 039792 402 VDMYAKCDSLTEARKVFDVMAD-----RN----VVSYNAMIEGYSKEEKLSEALDLFHEM 452 (819)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (819)
...+...|++++|...|++..+ +| ..+|..+...|...|++++|+..+.+.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445556666666666665533 11 234555666666666666666666554
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=1.2e-09 Score=110.64 Aligned_cols=201 Identities=10% Similarity=0.013 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKL------GLD-FDSFITSALIDMYAKCGSLEDAYETFGSTTW-------K 626 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 626 (819)
...++..+...+...|++++|...+..+.+. +-. ....++..+...|...|++++|.+.|++... +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666777777777777777777776653 211 2345677777788888888888877766541 1
Q ss_pred ----ChHhHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhc---
Q 039792 627 ----DVACWNSMICTNAHHGEPMKALLLFREMIIE------GLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGF--- 692 (819)
Q Consensus 627 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--- 692 (819)
...+|..+...|...|++++|+..|+++.+. +-.|+ ..++..+..++...|++++|..+++++.+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2346778888888889999999999888773 11343 346788888999999999999999988762
Q ss_pred ----CCccCchHH-HHHHHHhhcccc-----hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 693 ----GIEPGMEHY-ASVVSLLGRNVW-----NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 693 ----g~~p~~~~y-~~li~~l~r~~w-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
...|....+ ..+........+ ....+....+......|..+..+..|+.+|...|++++|.+.+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122332222 222221111100 222333333333334466677899999999999999999999998765
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.02 E-value=1.6e-09 Score=111.42 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=79.2
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CCCC-c
Q 039792 531 NAMLLGYTQQLENEEAIKLYLELLLS------QQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKL------GLDF-D 596 (819)
Q Consensus 531 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~ 596 (819)
..+...|...|++++|...|++..+. +..| ....+..+...+...|++++|..+++.+.+. +..| .
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 194 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 33344444444444444444444332 1112 2334555566666666666666666666553 1111 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC------------CC------hHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTTW------------KD------VACWNSMICTNAHHGEPMKALLLFREMIIEG 658 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 658 (819)
..++..+...|.+.|++++|.+.|+++.. .. ...+..+...+...+.+.+|...+++...
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 272 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV-- 272 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--
Confidence 34556666677777777777766655431 01 11222333344445566666666666654
Q ss_pred CCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 659 LEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 659 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..|+. .++..+..+|...|++++|.++|++..+
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34443 5677778888888888888888887765
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.98 E-value=1.5e-08 Score=94.79 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSL 613 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 613 (819)
...+...|++++|...|+++... .+.+...+..+...+...|++++|...++.+.+..+. +...+..+...|...|++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCH
Confidence 33444444444444444444332 1223444555555555555555555555555554332 445555666666666666
Q ss_pred HHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 614 EDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 614 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
++|.+.|+++. +.+...|..+...|...|++++|.+.++++.+ ..|+ ...+..+...+...|++++|..+++++
T Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG--LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666544 34556667777777777777777777777776 3454 356777777777778888887777777
Q ss_pred Hh
Q 039792 690 AG 691 (819)
Q Consensus 690 ~~ 691 (819)
.+
T Consensus 171 ~~ 172 (186)
T 3as5_A 171 NE 172 (186)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.94 E-value=1.2e-08 Score=99.64 Aligned_cols=191 Identities=11% Similarity=0.047 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHH
Q 039792 560 PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMIC 636 (819)
Q Consensus 560 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 636 (819)
.|+..+......+...|++++|...++.+++..+.++...+..+...|.+.|++++|.+.|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45677888888889999999999999999998765677777779999999999999999998766 345668888999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCch--------hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC---chHHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYI--------TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG---MEHYASVV 705 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~---~~~y~~li 705 (819)
.|...|++++|++.|++..+ +.|+.. .|..+...+...|++++|.+.|++..+. .|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998 667643 4677777888899999999999988763 343 22333333
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
..+ ...+....+++..+.+.+...|.. ......|.+++|...+++..+.
T Consensus 161 ~~~------~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLF------YNNGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH------HHHHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 333 345666778888888777655543 3455667889999999988763
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.92 E-value=1.7e-08 Score=114.93 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=129.3
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
.+|+.|...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...++++++..+. +...+..+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45666777777888888888888877764 34 4667778888888888888888888888887655 67788888888
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
|.+.|++++|.+.|++.. +.+...|+.+...|...|++++|++.|++.++ +.|+. ..+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHHH
Confidence 888999999988888765 44677889999999999999999999999988 78875 5788888899999999999
Q ss_pred HHHHHHHHh
Q 039792 683 LDHFQSMAG 691 (819)
Q Consensus 683 ~~~~~~m~~ 691 (819)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.91 E-value=2.2e-07 Score=98.36 Aligned_cols=193 Identities=13% Similarity=-0.037 Sum_probs=128.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC-------C----CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHH
Q 039792 499 GSALIDAYSKCFSNKDARLVFDEMNQ-------R----DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR--P--NEF 563 (819)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 563 (819)
+..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44556666777777777777665432 1 1124455666777888888888888877653211 1 234
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHhcCCCCC-------hHh
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLGLDFDS-FITS-----ALIDMYAKCGSLEDAYETFGSTTWKD-------VAC 630 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~ 630 (819)
++..+...+...|++++|...++...+....++. ..+. ..+..+...|++++|...+++...++ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5667777788888999998888887754222111 1111 23455778899999999998876332 124
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIE----GLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567778888899999999999887652 211122 2556666788889999999999888765
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.90 E-value=1.1e-07 Score=100.87 Aligned_cols=226 Identities=10% Similarity=0.012 Sum_probs=151.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----C-CchhHHHH
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQQ-RPN----EFTFAALITAASNLGSLKHGQQFHNHLIKLGL-----D-FDSFITSA 602 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 602 (819)
...+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445677888888888887764311 122 34566677777888888888888877765311 1 12446677
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC-chhHHHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIE---GLEPN-YITFVGV 669 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~-~~t~~~l 669 (819)
+...|...|++++|.+.|++.. .++ ..+++.+...|...|++++|++.|++..+. .-.|+ ..++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 8888888888888888887654 122 236777888899999999999999888761 01233 4567888
Q ss_pred HHHHHccCCHHHHHHHHHHHHh-cCCccCc---hHHHHHHHHhhcccch---hhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 670 LSACSHAGLIEDGLDHFQSMAG-FGIEPGM---EHYASVVSLLGRNVWN---VELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 670 l~a~~~~g~~~~a~~~~~~m~~-~g~~p~~---~~y~~li~~l~r~~w~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
...+.+.|++++|..++++..+ ..-.++. ..+..+..++.... + ...|...+++. ...|.....+..++.+
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~-~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV-DERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 8899999999999999999888 3332222 22333333332221 3 44454444442 2234445678899999
Q ss_pred HHhCCCchHHHHHHHHHHh
Q 039792 743 FACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 743 y~~~g~~~~a~~~~~~m~~ 761 (819)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988754
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.87 E-value=1.1e-08 Score=108.82 Aligned_cols=190 Identities=9% Similarity=0.010 Sum_probs=102.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC-----CC-----eeehhhhHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ-----RD-----IVVWNAMLLGYTQQLENEEAIKLYLELLLS----QQRP-NE 562 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 562 (819)
++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+. +..+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555555555555544321 11 224455556666666666666666655431 1111 12
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH-----hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCC-hH
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIK-----LGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-------WKD-VA 629 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~-~~ 629 (819)
.++..+..++...|+++.|...++...+ ..+ ....++..+...|.+.|++++|.+.+++.. .+. ..
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455566666666777777776666655 222 235556666667777777777776665433 111 22
Q ss_pred hHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGE---PMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.++.+...|...|+ .++|+..+++ .+..|+. ..+..+...|...|++++|..+|++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455555566 5555555554 2223332 3455566667777777777777766653
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.84 E-value=1.7e-07 Score=99.22 Aligned_cols=225 Identities=13% Similarity=-0.012 Sum_probs=123.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----CCe----eehhhhHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHH
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQ-----RDI----VVWNAMLLGYTQQLENEEAIKLYLELLLS----QQR--PN-EFT 564 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t 564 (819)
.+...|...|++++|...+++... .+. .+++.+...+...|++++|...+++.... +.. |. ...
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 344445555555555555554332 111 12344566677778888888777776532 221 22 234
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHhcCC----CC-ChHhHHH--
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDF----DSFITSALIDMYAKCGSLEDAYETFGSTT----WK-DVACWNS-- 633 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~-- 633 (819)
+..+...+...|++++|...++...+..... ....+..+...+...|++++|...+++.. .+ +...|..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 4555666677777777777777776543321 12345556666777777777777666532 11 1122221
Q ss_pred ---HHHHHHhCCChHHHHHHHHHHHHcCCCCCc---hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 634 ---MICTNAHHGEPMKALLLFREMIIEGLEPNY---ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 634 ---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
.+..+...|++++|...+++.......++. ..+..+...+...|++++|...++....
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~---------------- 281 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE---------------- 281 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------
Confidence 223355667777777776666542111111 1344555566666777777766666543
Q ss_pred hhcccchhhhHHHHHHHHHccCCC-----C-chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPM-----D-SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
..+. + ...+..++.+|...|++++|...+++..+
T Consensus 282 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 282 --------------------NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp --------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------------------HHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1110 1 12556667777777777777777776654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.82 E-value=8.2e-08 Score=97.66 Aligned_cols=209 Identities=9% Similarity=-0.035 Sum_probs=108.5
Q ss_pred ChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 039792 511 SNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLS----QQRPN-EFTFAALITAASNLGSLKHGQQFH 585 (819)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 585 (819)
++++|...|+.. ...|...|++++|++.|++.... |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366676666553 55666677777777776665432 11111 234555555555556666665555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC--
Q 039792 586 NHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHH-GEPMKALLLFREMIIEGLEPN-- 662 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-- 662 (819)
+..++.. ...|+...+ ..+|+.+...|... |++++|+..|++.++ +.|+
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~ 152 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQ 152 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTT
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCC
Confidence 5554321 111111111 22455566666664 677777766666665 3231
Q ss_pred -----chhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-ccCch-----HHHHHHHHhhcccchhhhHHHHHHHHHccCCC
Q 039792 663 -----YITFVGVLSACSHAGLIEDGLDHFQSMAGFGI-EPGME-----HYASVVSLLGRNVWNVELGRYAAEMAISIDPM 731 (819)
Q Consensus 663 -----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~~~-----~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~ 731 (819)
..++..+...+...|++++|+..|++..+... .+... .|..+...+-..+ +.+.|...++++++++|+
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHGGGCC---
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Confidence 13456666667777777777777777666221 12111 2222322222222 667777777777777776
Q ss_pred Cchh-----HHHHHHHHH--hCCCchHHHHHHHHH
Q 039792 732 DSGS-----YTLLSNTFA--CNSMWADAKQVRKKM 759 (819)
Q Consensus 732 ~~~~-----~~~l~~~y~--~~g~~~~a~~~~~~m 759 (819)
.... +..++..|. ..+++++|.+.++++
T Consensus 232 ~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 232 FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 5443 334555554 356788888877543
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=1.3e-08 Score=91.72 Aligned_cols=141 Identities=13% Similarity=0.046 Sum_probs=107.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCC
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTWK---DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGL 678 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 678 (819)
|..++...|++++|.+.++..... +...|-.+...|.+.|++++|++.|++.++ +.|+. .+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 455667778889998888877643 344667788889999999999999999988 77865 578888889999999
Q ss_pred HHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhh-hHHHHHHHHHccCCCCchhHHHHHHHHHhCCC
Q 039792 679 IEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVE-LGRYAAEMAISIDPMDSGSYTLLSNTFACNSM 748 (819)
Q Consensus 679 ~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 748 (819)
+++|...|++..+. .|+ ...|..+..+|.+.+ +.+ .++...+++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~-~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKND-VTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999998872 243 345555665555432 444 44556799999999999999999999998886
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.78 E-value=2e-07 Score=93.02 Aligned_cols=185 Identities=8% Similarity=-0.024 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-C---hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT--WK-D---VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFV 667 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~ 667 (819)
..+-.+...+.+.|++++|.+.|+++. .| + ...|..+..+|...|++++|+..|++.++ ..|+. ..+.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHHHH
Confidence 333344444555555555555555443 12 2 33445555555555555555555555555 33321 2334
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHHHh-cCCccCchH---------------HHHHHHHhhcccchhhhHHHHHH
Q 039792 668 GVLSACSH--------AGLIEDGLDHFQSMAG-FGIEPGMEH---------------YASVVSLLGRNVWNVELGRYAAE 723 (819)
Q Consensus 668 ~ll~a~~~--------~g~~~~a~~~~~~m~~-~g~~p~~~~---------------y~~li~~l~r~~w~~~~a~~~~~ 723 (819)
.+..++.. .|++++|...|++..+ ..-.+.... +-.+...|.+.+ +.+.|...++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE-LYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHH
Confidence 44444544 5555555555555554 222222110 012222222222 7788888889
Q ss_pred HHHccCCCC---chhHHHHHHHHHhC----------CCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCC
Q 039792 724 MAISIDPMD---SGSYTLLSNTFACN----------SMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHH 790 (819)
Q Consensus 724 ~~~~~~p~~---~~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~ 790 (819)
++++..|++ +..+..++.+|... |++++|...++++.+. .| ++|
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~----~p-------------------~~~ 229 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI----FP-------------------DSP 229 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH----CT-------------------TCT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH----CC-------------------CCh
Confidence 999998884 45889999999876 9999999999988652 23 377
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 039792 791 AADLTYSILDNLILHIKG 808 (819)
Q Consensus 791 ~~~~i~~~l~~l~~~~~~ 808 (819)
...+....+..+..++.+
T Consensus 230 ~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777888888888777765
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.78 E-value=2e-07 Score=94.69 Aligned_cols=127 Identities=9% Similarity=-0.043 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhc--cCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHh
Q 039792 444 EALDLFHEMRVGFVPPGLLTFVSLLGLSSS--VFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDE 521 (819)
Q Consensus 444 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 521 (819)
+|.+++.+-.+. .+++...| .++ .. .+++++|...+... ...|...|++++|...|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 566666666544 22222222 332 21 12467766666554 5578889999999998887
Q ss_pred cCC-----CC----eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhcc-CChHHHHHHHH
Q 039792 522 MNQ-----RD----IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-PN----EFTFAALITAASNL-GSLKHGQQFHN 586 (819)
Q Consensus 522 ~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~-g~~~~a~~~~~ 586 (819)
..+ .+ ..+|+.+...|...|++++|+..|++....... .+ ..++..+...+... |++++|...++
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 643 11 457888999999999999999999987652100 01 23444445555553 55555555555
Q ss_pred HHHH
Q 039792 587 HLIK 590 (819)
Q Consensus 587 ~~~~ 590 (819)
..++
T Consensus 143 ~Al~ 146 (292)
T 1qqe_A 143 LAGE 146 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.78 E-value=8.8e-08 Score=96.61 Aligned_cols=197 Identities=13% Similarity=0.071 Sum_probs=119.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCC-------C----CeeehhhhHHHHHhcCCHHHHHHHHHHHHHC------C
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQ-------R----DIVVWNAMLLGYTQQLENEEAIKLYLELLLS------Q 557 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 557 (819)
...++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 445566677777777777777777765542 1 2346677778888888888888888887653 1
Q ss_pred CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCCC----
Q 039792 558 QRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKL------GLDF-DSFITSALIDMYAKCGSLEDAYETFGSTTW---- 625 (819)
Q Consensus 558 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 625 (819)
-.| ...++..+...+...|++++|...++.+.+. +-.| ...++..+...|.+.|++++|.+.|++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 112 3456677777788888888888888877764 1112 345667777888888888888887765431
Q ss_pred --------CChHhHHHHHHHHHhCCChHHHHHHHHHHHH-cCC---CCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 626 --------KDVACWNSMICTNAHHGEPMKALLLFREMII-EGL---EPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 626 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~---~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.....|..+...+...+....+..+...... ... .|+ ..++..+..+|...|++++|..++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222344444444433333222221111110 011 122 23577777788888888888888887764
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.73 E-value=2.3e-07 Score=81.23 Aligned_cols=127 Identities=16% Similarity=0.251 Sum_probs=65.1
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK 609 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 609 (819)
|..+...+...|++++|..+|+++.... +.+...+..+...+...|+++.|..+++.+.+.++. +...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~---------- 71 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEA---------- 71 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH----------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHH----------
Confidence 4445555666666666666666665432 223444555555555555566665555555554322 3333
Q ss_pred cCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHH
Q 039792 610 CGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQS 688 (819)
Q Consensus 610 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 688 (819)
|..+...+...|++++|++.++++.+ ..|+ ..++..+...+...|++++|...+++
T Consensus 72 ---------------------~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 72 ---------------------WYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp ---------------------HHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 44444444455555555555555544 2232 23444455555555555555555555
Q ss_pred HHh
Q 039792 689 MAG 691 (819)
Q Consensus 689 m~~ 691 (819)
+..
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 543
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.71 E-value=2.5e-07 Score=80.98 Aligned_cols=129 Identities=12% Similarity=0.183 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLL 708 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l 708 (819)
.|..+...|...|++++|+.+++++.+ ..|+ ...+..+...+...|++++|..+++++...+ ..+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 355566666666666666666666665 2343 3455556666666667777777666666522 11233444444444
Q ss_pred hcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 709 GRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 709 ~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.+.+ +.+.|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 80 ~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4332 6667777777777788888889999999999999999999999988754
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.71 E-value=5.4e-07 Score=91.19 Aligned_cols=163 Identities=9% Similarity=-0.003 Sum_probs=130.6
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHH-HH
Q 039792 559 RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNS-MI 635 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~-li 635 (819)
+.+...+..+...+...|++++|...++.+.+..+. +...+..+...|.+.|++++|.+.+++.. .|+...+.. ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 344556677777888999999999999999998765 77888899999999999999999999987 455443332 33
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccch
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWN 714 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~ 714 (819)
..+...++.++|++.+++..+ ..|+. ..+..+..++...|++++|...|.++
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~------------------------- 245 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGH------------------------- 245 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------
T ss_pred HHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHH-------------------------
Confidence 346777888999999999988 67865 57888888999999988888776554
Q ss_pred hhhHHHHHHHHHccCCCC--chhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 715 VELGRYAAEMAISIDPMD--SGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
++.+|++ +..+..|+.+|...|+.++|...+++..
T Consensus 246 -----------l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 246 -----------LRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp -----------HHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----------HhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4556666 7789999999999999999988877653
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.70 E-value=5e-07 Score=87.78 Aligned_cols=181 Identities=15% Similarity=-0.020 Sum_probs=100.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC-h---HhHHHHH
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLGLDFD--SFITSALIDMYAKCGSLEDAYETFGSTT--WKD-V---ACWNSMI 635 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~~li 635 (819)
.+..+...+...|++++|...++.+++..+... ...+..+..+|.+.|++++|.+.|++.. .|+ . ..|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344445556666667777776666666543311 2345555666666666666666666544 222 1 1233333
Q ss_pred HHHHh------------------CCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc
Q 039792 636 CTNAH------------------HGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP 696 (819)
Q Consensus 636 ~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p 696 (819)
.++.. .|+.++|+..|+++++ ..|+.. .+...... +.. ...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l----~~~------~~~~~~----- 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL----VFL------KDRLAK----- 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH----HHH------HHHHHH-----
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH----HHH------HHHHHH-----
Confidence 33332 3445555555555554 344432 11111000 000 000000
Q ss_pred CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc---hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCc
Q 039792 697 GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS---GSYTLLSNTFACNSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 697 ~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 765 (819)
..-.+...|-+.+ +.+.|...++++++..|+++ ..+..++.+|...|++++|.+.++.+...+.+
T Consensus 149 ---~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 ---YEYSVAEYYTERG-AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHcC-cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0011122222211 78899999999999999986 57999999999999999999999999876543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.69 E-value=2.7e-07 Score=92.09 Aligned_cols=199 Identities=11% Similarity=-0.054 Sum_probs=104.5
Q ss_pred eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHH
Q 039792 527 IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN----EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF--DSFIT 600 (819)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ 600 (819)
...+-.+...+.+.|++++|+..|+++.... |+ ...+..+..++...|+++.|...++.+++..+.. ....+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3344445555666666666666666665532 22 3445555555556666666666666665543321 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhH-------------
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITF------------- 666 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~------------- 666 (819)
..+...|.+.+. ..+...|++++|+..|++.++ ..|+. ...
T Consensus 93 ~~lg~~~~~~~~-----------------------~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~~~~~~~ 147 (261)
T 3qky_A 93 YERAMCYYKLSP-----------------------PYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIRELRAKL 147 (261)
T ss_dssp HHHHHHHHHHCC-----------------------CTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----------------------cccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHHHHHHHH
Confidence 334444444000 000005555555555555555 33432 122
Q ss_pred ----HHHHHHHHccCCHHHHHHHHHHHHh-cCCccC-chHHHHHHHHhhccc---------chhhhHHHHHHHHHccCCC
Q 039792 667 ----VGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG-MEHYASVVSLLGRNV---------WNVELGRYAAEMAISIDPM 731 (819)
Q Consensus 667 ----~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~-~~~y~~li~~l~r~~---------w~~~~a~~~~~~~~~~~p~ 731 (819)
..+...+...|++++|+..|+++.+ ..-.|. ...+..+...+.+.+ -+.+.|...++++++..|+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 4456667777888888888777776 332221 223444444443110 1667888888888888888
Q ss_pred Cch---hHHHHHHHHHhCCCchHH
Q 039792 732 DSG---SYTLLSNTFACNSMWADA 752 (819)
Q Consensus 732 ~~~---~~~~l~~~y~~~g~~~~a 752 (819)
++. ++..+..++...|+++++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhh
Confidence 853 455566666555555443
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.66 E-value=2.9e-06 Score=85.41 Aligned_cols=213 Identities=9% Similarity=0.014 Sum_probs=164.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---
Q 039792 541 LENEEAIKLYLELLLSQQRPNE-FTFAALITAASNLG--SLKHGQQFHNHLIKLGLDFDSFITSALIDMY----AKC--- 610 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 610 (819)
...++|++++.+++.. .|+. ..|+.--..+...+ +++++..+++.++..+++ +..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3446899999988874 5654 44566666667777 999999999999998876 666676655555 555
Q ss_pred CCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChH--HHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCC------
Q 039792 611 GSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPM--KALLLFREMIIEGLEPN-YITFVGVLSACSHAGL------ 678 (819)
Q Consensus 611 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~------ 678 (819)
++++++.++++++. ++|..+|+.-...+...|.++ ++++.++++++ ..|. ...|..-...+.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 78999999998877 668889988888888888888 99999999998 5674 4678777777777776
Q ss_pred HHHHHHHHHHHHh-cCCccCchHH-HHHHHHhhcccchhhhHHHHHHHHHccC---CCCchhHHHHHHHHHhCCCchHHH
Q 039792 679 IEDGLDHFQSMAG-FGIEPGMEHY-ASVVSLLGRNVWNVELGRYAAEMAISID---PMDSGSYTLLSNTFACNSMWADAK 753 (819)
Q Consensus 679 ~~~a~~~~~~m~~-~g~~p~~~~y-~~li~~l~r~~w~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~ 753 (819)
++++++++++++. ..-..+.-+| ..++..+|+ ..+.....++++++++ |.++.++..|+.+|.+.|+.++|.
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR---SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC---ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8999999999987 3333333322 345555555 4565667788888876 889999999999999999999999
Q ss_pred HHHHHHHh
Q 039792 754 QVRKKMDL 761 (819)
Q Consensus 754 ~~~~~m~~ 761 (819)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.64 E-value=4.4e-07 Score=90.35 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=126.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 546 AIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGL-DFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 546 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++.+|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777766554 55666666777778888888888888888766654 2366777778888999999999999998877
Q ss_pred --CC-----ChHhHHHHHHH--HHhCC--ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-c
Q 039792 625 --WK-----DVACWNSMICT--NAHHG--EPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-F 692 (819)
Q Consensus 625 --~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~ 692 (819)
.| +..+...|+.+ ....| ++++|..+|+++.+ -.|+..+-..+++++.+.|++++|.+.++.+.+ +
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44 23444555555 33334 89999999999876 456634445555588999999999999987765 2
Q ss_pred -CC------ccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHH
Q 039792 693 -GI------EPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYT 737 (819)
Q Consensus 693 -g~------~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~ 737 (819)
.+ .|+ ..+...+|.+.-..+ + .+.+..+++.+..|+++....
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lg-k--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQG-L--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTT-C--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC-h--HHHHHHHHHHHhCCCChHHHH
Confidence 11 233 333423322221111 2 567888889999998876654
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.63 E-value=9.6e-08 Score=109.45 Aligned_cols=194 Identities=11% Similarity=-0.021 Sum_probs=146.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039792 538 TQQLENEEAIKLYLELL--------LSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK 609 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 609 (819)
...|++++|++.|++.. +. .+.+...+..+..++...|++++|...++.+++..+. +...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999887 32 2345567778888889999999999999999987665 77888889999999
Q ss_pred cCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHH
Q 039792 610 CGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 610 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
.|++++|.+.|++.. +.+...|..+...|.+.|++++ ++.|++.++ +.|+. ..|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998866 4467788999999999999999 999999988 67865 5788888899999999999999
Q ss_pred HHHHHhcCCccC-chHHHHHHHHhhccc--c--hhhhHHHHHHHHHccCCCCchhHHH
Q 039792 686 FQSMAGFGIEPG-MEHYASVVSLLGRNV--W--NVELGRYAAEMAISIDPMDSGSYTL 738 (819)
Q Consensus 686 ~~~m~~~g~~p~-~~~y~~li~~l~r~~--w--~~~~a~~~~~~~~~~~p~~~~~~~~ 738 (819)
|++..+ +.|+ ...+..+..++-... . +.+....+.+.+..+.+.++..+..
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 988765 3454 233444444442210 0 1355556666666777666665443
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.58 E-value=1e-06 Score=81.66 Aligned_cols=152 Identities=9% Similarity=0.004 Sum_probs=86.3
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHH-HHhCCChHH
Q 039792 570 TAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICT-NAHHGEPMK 646 (819)
Q Consensus 570 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~-~~~~g~~~~ 646 (819)
..+...|++++|...++.+++..+. +...+..+...|.+.|++++|...|++.. .|+...+..+... +...++..+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccch
Confidence 3344455555555555555444332 44555556666666666666666666554 2232222211111 112222234
Q ss_pred HHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 647 ALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
|++.+++.++ ..|+. ..+..+..++...|++++|... ++++
T Consensus 93 a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~------------------------------------~~~~ 134 (176)
T 2r5s_A 93 ELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALEL------------------------------------LWNI 134 (176)
T ss_dssp HHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHH------------------------------------HHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHH------------------------------------HHHH
Confidence 5556666655 45543 4455555556666655555554 5555
Q ss_pred HccCCCC--chhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 726 ISIDPMD--SGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 726 ~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
++.+|+. +..+..|+.+|...|++++|...+++..
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 6667654 5689999999999999999999888764
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.57 E-value=1.5e-06 Score=83.48 Aligned_cols=176 Identities=10% Similarity=-0.040 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhCC----ChHHHHHHHHHHH
Q 039792 581 GQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WKDVACWNSMICTNAHHG----EPMKALLLFREMI 655 (819)
Q Consensus 581 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 655 (819)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++.. ..+..++..|...|.. + +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 45566666666666677777777666655 3355566666666665 5 6777777777776
Q ss_pred HcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcc---cchhhhHHHHHHHHHc
Q 039792 656 IEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRN---VWNVELGRYAAEMAIS 727 (819)
Q Consensus 656 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~---~w~~~~a~~~~~~~~~ 727 (819)
+.| +...+..|...|.. .+++++|.++|++..+.|... ....+..|-.+|-.. .-|.+.|...++++.+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 643 44566666666666 677888888887777655320 123333444444321 0178888889999988
Q ss_pred cCCCCchhHHHHHHHHHhC-C-----CchHHHHHHHHHHhCCC
Q 039792 728 IDPMDSGSYTLLSNTFACN-S-----MWADAKQVRKKMDLDGL 764 (819)
Q Consensus 728 ~~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~g~ 764 (819)
+ |+++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8 77888999999999864 3 89999999998887653
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=2e-06 Score=82.57 Aligned_cols=142 Identities=7% Similarity=-0.013 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccC
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAG 677 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 677 (819)
.+..+...|...|++++|.+.|++...++...|..+...|...|++++|++.|++..+ +.|+. ..+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcc
Confidence 3455777888999999999999999988999999999999999999999999999998 56754 67888999999999
Q ss_pred CHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 039792 678 LIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVR 756 (819)
Q Consensus 678 ~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 756 (819)
++++|.+.|++..+ ..-.+... + ........|..+..+..++.+|...|++++|.+.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~--------~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLID--------Y-------------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEE--------C-------------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHH--------H-------------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999887 32222110 0 01112344555678888888888888888888888
Q ss_pred HHHHhCC
Q 039792 757 KKMDLDG 763 (819)
Q Consensus 757 ~~m~~~g 763 (819)
++..+..
T Consensus 145 ~~al~~~ 151 (213)
T 1hh8_A 145 ALATSMK 151 (213)
T ss_dssp HHHHTTC
T ss_pred HHHHHcC
Confidence 8776543
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.54 E-value=4.1e-05 Score=83.42 Aligned_cols=367 Identities=10% Similarity=0.034 Sum_probs=188.2
Q ss_pred hcC-CchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCC-hHHH
Q 039792 236 KSG-RSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGR-VKMA 313 (819)
Q Consensus 236 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A 313 (819)
+.| +++.|..+|+.+... -|. ++.+.+.++|+..+.. .|++.+|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377778887777642 222 7888888888888774 4577888888877776653 3445
Q ss_pred HHHHhccc------CCCcccHHHHHHHHH----cCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHh---cCCcchhhHH
Q 039792 314 RRLFDEIE------VKNIISWTTLIGGYM----QNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSC---GSVEALEQGR 380 (819)
Q Consensus 314 ~~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~ 380 (819)
..+|+... ..+...|...+.-+. .+++.+.+.++|++.+.. |.. .+..+-..+ ....+...+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHH
Confidence 55555533 123345666665433 234566777777777752 211 111111111 1111111111
Q ss_pred HHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCC-------hhHHHHHH
Q 039792 381 QVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD----RNVVSYNAMIEGYSKEEK-------LSEALDLF 449 (819)
Q Consensus 381 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~-------~~~A~~~~ 449 (819)
.+..... +.+..|+.+++.+.. .+...|...+.--..++. .+.+..+|
T Consensus 144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 1111110 112223333222211 123345444443222211 23455667
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHH-HHHHHhcC-----
Q 039792 450 HEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDA-RLVFDEMN----- 523 (819)
Q Consensus 450 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~----- 523 (819)
++.... .+.+...+...+.-+...|+.+.|..+++..+.. +.+...+. .|+...+.++. ..+.+...
T Consensus 203 e~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 203 NYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC-----
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccc
Confidence 776553 3344556666666666777777777777777776 22222221 22222111111 11111110
Q ss_pred -----C--CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCC
Q 039792 524 -----Q--RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN-LGSLKHGQQFHNHLIKLGLDF 595 (819)
Q Consensus 524 -----~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~ 595 (819)
. .....|-..+....+.++.+.|..+|.+. .. ..++...|......-.. .++.+.|..+++..++..+.
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~- 352 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD- 352 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-
Confidence 0 01124555555555667778888888777 21 12233344322111111 23578888888887775433
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
++..+...++...+.|+.+.|..+|+++. +....|...+.--..+|+.+.+.++++++.+
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556667777777888888888888874 3456677777766777777777777777664
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=4.3e-07 Score=81.35 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccC
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAG 677 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 677 (819)
+...+.+.+...+.+.++.+ +.+.+...|..+...+.+.|++++|+..|++.++ +.|+. ..|..+..+|...|
T Consensus 11 ~~~~l~~~~~~~~~l~~al~----l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINA----IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCC----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHc
Confidence 34445555554444333321 1122445777788888889999999999999888 67864 56777888888888
Q ss_pred CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 039792 678 LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRK 757 (819)
Q Consensus 678 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 757 (819)
++++|+..| +++++++|+++.+|..++.+|...|++++|.+.++
T Consensus 85 ~~~~Ai~~~------------------------------------~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 85 QFQQAADLY------------------------------------AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp CHHHHHHHH------------------------------------HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHH------------------------------------HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 877776654 56677889999999999999999999999999999
Q ss_pred HHHhC
Q 039792 758 KMDLD 762 (819)
Q Consensus 758 ~m~~~ 762 (819)
+..+.
T Consensus 129 ~al~l 133 (151)
T 3gyz_A 129 LVIQH 133 (151)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 104
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=4.8e-07 Score=91.19 Aligned_cols=192 Identities=10% Similarity=-0.051 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT 637 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 637 (819)
+...+..+...+...|++++|...++.+++..+. +...+..+...|.+.|++++|.+.+++.. +.+...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455666777778888888888888888887654 77788888999999999999999998766 3466788889999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhh
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVE 716 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~ 716 (819)
|...|++++|+..|++..+ +.|+. ..+...+....+. .++. -+.........++......+..++. . +.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~l~~-~--~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTRLIA-A--ERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHHHHH-H--HHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHHHHH-H--HHH
Confidence 9999999999999999887 45533 1222222222211 1111 1222222334444444444444432 2 778
Q ss_pred hHHHHHHHHHccCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHHhC
Q 039792 717 LGRYAAEMAISIDPMDSGSYTLLSNTFACN-SMWADAKQVRKKMDLD 762 (819)
Q Consensus 717 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 762 (819)
.|...++++++++|++......+..++... +++++|.++++++.+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888889999999999988888888888887 7899999999988653
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.53 E-value=1.2e-06 Score=87.10 Aligned_cols=233 Identities=7% Similarity=-0.057 Sum_probs=155.8
Q ss_pred hcCChHHHHHHHHhcCCCCee-ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 039792 508 KCFSNKDARLVFDEMNQRDIV-VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHN 586 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 586 (819)
-.|.+..+..-...+...+.. .-.-+.++|...|++... ..-.|....+..+..-+ ..+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence 345666555544444322211 111234667777766531 11234443444433333 322 566677
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 587 HLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW-----KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
...+.+ .++......+..+|...|++++|.+++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+ ..|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCc
Confidence 666655 34555566889999999999999999998742 3456778889999999999999999999988 678
Q ss_pred -----CchhHHHHHHH--HHccC--CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHcc----
Q 039792 662 -----NYITFVGVLSA--CSHAG--LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISI---- 728 (819)
Q Consensus 662 -----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~---- 728 (819)
+..+...|..+ ....| ++.+|..+|+++.+.. |+......++.++-+.+ +++.|+..++.+++.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g-~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQR-NIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHT-CHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcC-CHHHHHHHHHHHHHhcccc
Confidence 35666666655 33344 9999999999997622 33112122222222222 889999999988887
Q ss_pred ------CCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 729 ------DPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 729 ------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+|+|+.++..++.++...|+ +|.++++++++.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 58899999888888888897 899999999863
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.51 E-value=7.3e-07 Score=85.33 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA 676 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 676 (819)
..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++.++ +.|+. .++..+..++...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 346667777777777777776655 34566777777777777777777777777777 56754 4566666666554
Q ss_pred CC--HHHHHHHHHHHHhcCCccCchHHHHHHHHhh--cccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 677 GL--IEDGLDHFQSMAGFGIEPGMEHYASVVSLLG--RNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 677 g~--~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~--r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
|. .+.+...++... .|+...+...-..++ ..+ +.+.|...+++++++.|++ .....|..+
T Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTT-RYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 43 233444444432 233222211111110 001 5677777778888877753 333444443
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.50 E-value=7.3e-07 Score=102.12 Aligned_cols=167 Identities=6% Similarity=-0.088 Sum_probs=138.8
Q ss_pred HhcCChHHHHHHHHhcC--------C---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039792 507 SKCFSNKDARLVFDEMN--------Q---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNL 575 (819)
Q Consensus 507 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 575 (819)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999876 2 355678888889999999999999999988752 34667888888889999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHH
Q 039792 576 GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFR 652 (819)
Q Consensus 576 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 652 (819)
|++++|...|+.+++..+. +...+..+..+|.+.|++++ .+.|++.. +.+...|..+...|...|++++|++.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999998765 67888899999999999999 99998766 4567789999999999999999999999
Q ss_pred HHHHcCCCCCc-hhHHHHHHHHHccCC
Q 039792 653 EMIIEGLEPNY-ITFVGVLSACSHAGL 678 (819)
Q Consensus 653 ~m~~~g~~p~~-~t~~~ll~a~~~~g~ 678 (819)
+..+ +.|+. ..+..+..++...|.
T Consensus 559 ~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCT--TSTTHHHHHHHHHHHTC----
T ss_pred hhcc--cCcccHHHHHHHHHHHHccCC
Confidence 9987 78875 567777778777665
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.49 E-value=1.2e-06 Score=98.50 Aligned_cols=161 Identities=11% Similarity=-0.006 Sum_probs=120.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLF 651 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 651 (819)
.|++++|...++++.+..+. +...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999999887654 67889999999999999999999999765 446778999999999999999999999
Q ss_pred HHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcc-cc-hhhhHHHHHHHHHc
Q 039792 652 REMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRN-VW-NVELGRYAAEMAIS 727 (819)
Q Consensus 652 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~-~w-~~~~a~~~~~~~~~ 727 (819)
++..+ +.|+. ..+..+..++...|++++|.+.+++..+.. | +...+..+...+... .| +.+.|...++++++
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998 67865 678899999999999999999999998832 3 234555566655543 23 88999999999999
Q ss_pred cCCCCchhHHHHH
Q 039792 728 IDPMDSGSYTLLS 740 (819)
Q Consensus 728 ~~p~~~~~~~~l~ 740 (819)
.+|++...|..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999998887
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.48 E-value=4.7e-06 Score=79.89 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=120.3
Q ss_pred CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHHHhCCCCchhHHH
Q 039792 526 DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLG----SLKHGQQFHNHLIKLGLDFDSFITS 601 (819)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~ 601 (819)
++..+..+...|...+++++|++.|++..+.| +...+..+-..+.. + ++++|..+++...+.| ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555666666777788888888888877754 45566666666666 5 7888888888887765 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHhcCCCCC-----hHhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCchhHHH
Q 039792 602 ALIDMYAK----CGSLEDAYETFGSTTWKD-----VACWNSMICTNAH----HGEPMKALLLFREMIIEGLEPNYITFVG 668 (819)
Q Consensus 602 ~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 668 (819)
.|..+|.. .+++++|.+.|++....+ +.++..|...|.. .++.++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 78888877 788999999998877433 5788888888888 78899999999999884 344556777
Q ss_pred HHHHHHcc-C-----CHHHHHHHHHHHHhcCCcc
Q 039792 669 VLSACSHA-G-----LIEDGLDHFQSMAGFGIEP 696 (819)
Q Consensus 669 ll~a~~~~-g-----~~~~a~~~~~~m~~~g~~p 696 (819)
|...|... | +.++|...|+...+.|...
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 77776643 3 7899999988888766443
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.48 E-value=4.6e-06 Score=80.85 Aligned_cols=178 Identities=10% Similarity=-0.049 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC--CCe----eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH-HHHHHHH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ--RDI----VVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-PNE-FTFAALI 569 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~~ll 569 (819)
.+..+...+.+.|++++|...|+.+.+ |+. ..+..+..+|.+.|++++|+..|++..+.... |.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344455566666777777777766553 321 24555566666677777777777766653211 111 1222222
Q ss_pred HHHhc------------------cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhH
Q 039792 570 TAASN------------------LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACW 631 (819)
Q Consensus 570 ~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 631 (819)
.++.. .|+.++|...++.+++..+. +.....++..+..-.+... ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~--------------~~~ 150 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLA--------------KYE 150 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHH--------------HHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHH--------------HHH
Confidence 22221 23444444444444443322 1222111111000000000 011
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAGF 692 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 692 (819)
..+...|...|++++|+..|+++++ ..|+. ..+..+..++.+.|+.++|.+.++.+...
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 2456678889999999999999998 56764 35778888999999999999999988763
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.47 E-value=1.1e-06 Score=89.04 Aligned_cols=141 Identities=9% Similarity=-0.045 Sum_probs=108.2
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 039792 616 AYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 616 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 694 (819)
..+.++...+.+...+..+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|...+++....
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 33444444444555667778888899999999999999988 67865 57888888999999999999999988662
Q ss_pred ccCchH--HHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 695 EPGMEH--YASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 695 ~p~~~~--y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.|+... ....+....+. +.+.+...++++++.+|+++..+..|+.+|...|++++|...++++.+.
T Consensus 181 ~p~~~~~~~~~~~~l~~~~--~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQA--ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhhc--ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 343322 22222222222 5566888999999999999999999999999999999999999988763
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.44 E-value=1.7e-06 Score=82.66 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=54.3
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++..+. +...+..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 4444555555555555555544431 123344444444555555555555555555554433 34444444444433322
Q ss_pred --HHHHHHHHhcCCCCChH--hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 613 --LEDAYETFGSTTWKDVA--CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 613 --~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
.+.+...++....++.. .|..+..++...|++++|+..|++.++ +.|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~ 189 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPS 189 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCC
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 23334444444433322 122233333344445555555555444 4444
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.43 E-value=1.9e-06 Score=96.87 Aligned_cols=149 Identities=8% Similarity=-0.034 Sum_probs=116.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 039792 540 QLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 540 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
.|++++|++.|++..+.. +-+...+..+...+...|++++|...++...+..+. +...+..+...|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987642 335778888999999999999999999999987654 688899999999999999999999
Q ss_pred HhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc---CCHHHHHHHHHHHHhc
Q 039792 620 FGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA---GLIEDGLDHFQSMAGF 692 (819)
Q Consensus 620 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~ 692 (819)
|++.. +.+...|..+...|...|++++|++.|++..+ +.|+. ..+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99866 45678999999999999999999999999998 67764 6788888999999 9999999999999883
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.42 E-value=2.9e-05 Score=79.32 Aligned_cols=92 Identities=7% Similarity=0.004 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----h
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGLDF-----DSFITSALIDMYAKCGSLEDAYETFGSTTW-----KD----V 628 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~ 628 (819)
.++..+...+.. |+++.|...++..++..... ...+++.+...|.+.|++++|.+.|++... ++ .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 345555566666 77777777777666432110 134555566666667777766666665441 11 1
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
..|..+...+...|++++|+..|++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 244455555666667777777666665
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.41 E-value=4.5e-07 Score=81.56 Aligned_cols=135 Identities=9% Similarity=-0.063 Sum_probs=73.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDA 616 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 616 (819)
...|++++|++.+++.... .|+ ...+..+...+...|+++.|...++.+++..+. +...+..+..+|.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 3445556666655554432 222 223344555556666666666666666665543 555666666666666666666
Q ss_pred HHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHH-HHHHHHcCCCCCc-hhHHHHHHHHHccC
Q 039792 617 YETFGSTT---WKDVACWNSMICTNAHHGEPMKALLL-FREMIIEGLEPNY-ITFVGVLSACSHAG 677 (819)
Q Consensus 617 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~-~t~~~ll~a~~~~g 677 (819)
...|++.. +.+...|..+...|.+.|+.++|.+. +++.++ +.|+. .+|......+...|
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 66666544 33455666666666666666555443 466665 56654 33444444444444
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.41 E-value=2e-05 Score=79.91 Aligned_cols=158 Identities=13% Similarity=0.062 Sum_probs=105.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--C-Ch-----H-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-----hHHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTW--K-DV-----A-CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-----TFVG 668 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~--~-~~-----~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ 668 (819)
.+..+.+.|++++|.+.+++... + +. . .+..+...+...|++++|+..|++..+.....+.. +++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888876442 1 11 1 22345566666778888888888888732222221 5777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh-c----CCccCc-hHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC------chhH
Q 039792 669 VLSACSHAGLIEDGLDHFQSMAG-F----GIEPGM-EHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD------SGSY 736 (819)
Q Consensus 669 ll~a~~~~g~~~~a~~~~~~m~~-~----g~~p~~-~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~------~~~~ 736 (819)
+..+|...|++++|..+|+++.+ . +..|.. ..|..+...|.+.+ +.+.|...+++++++.++. +..|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888888888888888888875 1 211111 13344444443332 7788888888888776543 6789
Q ss_pred HHHHHHHHhCCC-chHHHHHHHHHHh
Q 039792 737 TLLSNTFACNSM-WADAKQVRKKMDL 761 (819)
Q Consensus 737 ~~l~~~y~~~g~-~~~a~~~~~~m~~ 761 (819)
..++.+|...|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999998887754
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.40 E-value=2.8e-06 Score=78.72 Aligned_cols=153 Identities=12% Similarity=-0.025 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 039792 499 GSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA-ASN 574 (819)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 574 (819)
...+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34455667778888888888887765 34566777777788888888888888776653 2333322211111 111
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CC---ChHhHHHHHHHHHhCCChHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WK---DVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
.+....+...++..++..+. +...+..+...|...|++++|...|+++. .| +...|..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 11222344555555554433 34444444445555555555444444333 11 12234444444444444444444
Q ss_pred HHHHH
Q 039792 650 LFREM 654 (819)
Q Consensus 650 ~~~~m 654 (819)
.|++.
T Consensus 166 ~y~~a 170 (176)
T 2r5s_A 166 KYRRQ 170 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.39 E-value=2e-06 Score=88.00 Aligned_cols=219 Identities=9% Similarity=-0.033 Sum_probs=123.2
Q ss_pred cCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 039792 509 CFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHL 588 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 588 (819)
.|++++|.+++++..+.....+ +...+++++|...|.+. ...+...|++++|...+...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHH
Confidence 4667788888876543111111 00135666666666554 33455667777777777666
Q ss_pred HHhCCC---C--chhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHH
Q 039792 589 IKLGLD---F--DSFITSALIDMYAKCGSLEDAYETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 589 ~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 654 (819)
.+.... + -...++.+..+|.+.|++++|.+.|++.. ..+ ..+|+.+...|.. |++++|++.|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 542111 0 13456667777777777777777666533 111 2356667777766 8888888877777
Q ss_pred HHcCCCCC-------chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC---c-hHHHHHHHHhhcccchhhhHHHHH
Q 039792 655 IIEGLEPN-------YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG---M-EHYASVVSLLGRNVWNVELGRYAA 722 (819)
Q Consensus 655 ~~~g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~---~-~~y~~li~~l~r~~w~~~~a~~~~ 722 (819)
++ +.|+ ..++..+...+...|++++|+..|++... ..-.+. . ..+..+...+-..+ +.+.|...+
T Consensus 142 l~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~ 218 (307)
T 2ifu_A 142 AA--VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-DYVAAQKCV 218 (307)
T ss_dssp HH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HH--HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 65 2221 23566677777778888888888877766 211111 1 12222222222111 677777788
Q ss_pred HHHHccCCCCchh-----HHHHHHHHHhCCCchHHHH
Q 039792 723 EMAISIDPMDSGS-----YTLLSNTFACNSMWADAKQ 754 (819)
Q Consensus 723 ~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 754 (819)
++++ ++|..... ...++..| ..|+.+++.+
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8887 77765432 33344444 4566555544
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.39 E-value=3e-06 Score=73.39 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhh
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLG 709 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~ 709 (819)
......|.+.|++++|++.|++.++ +.|+. ..|..+..++.+.|++++|++.|++.++. .|+ ...|..+...+.
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence 3344444444444444444444444 33432 33444444444444444444444444431 111 122222222222
Q ss_pred cccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 710 RNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 710 r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
..+ +.+.|...++++++++|+++.++..|+++
T Consensus 93 ~~~-~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMR-EWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCC-CHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 211 44555555666667777777776666554
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.34 E-value=0.00016 Score=78.81 Aligned_cols=195 Identities=12% Similarity=0.013 Sum_probs=123.4
Q ss_pred HHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHH
Q 039792 413 EARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK 489 (819)
Q Consensus 413 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 489 (819)
.+..+|++... .+...|-..+.-+.+.|+.++|..+|++.... |....+......+.... . +++.+.+
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~---~~~~l~~ 267 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---A---VYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---H---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---H---HHHHHHH
Confidence 34556655543 23456777777777888888888888888766 44333222111111111 1 1222222
Q ss_pred hC------------CccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHH-H---HHhcCCHHHHHHHHHHH
Q 039792 490 YG------------VFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLL-G---YTQQLENEEAIKLYLEL 553 (819)
Q Consensus 490 ~g------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-~---~~~~g~~~~A~~~~~~m 553 (819)
.- ......+|...++.+.+.+..+.|..+|+....|. .++...+. + +...++.+.|..+|+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 01123456666777777888999999999984343 23333221 1 12234799999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 039792 554 LLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGST 623 (819)
Q Consensus 554 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 623 (819)
.+.. +-+...+...+.-....|+.+.|+.+++.+. .....|...++.-...|+.+.+.+++++.
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8753 2234445556666678899999999999872 26788999999888899999999887664
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.33 E-value=9.5e-06 Score=77.70 Aligned_cols=122 Identities=9% Similarity=-0.013 Sum_probs=59.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLE 614 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 614 (819)
..+...|++++|+..|++. +.|+...+..+...+...|++++|...++..++..+. +...+..+..+|.+.|+++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcccHH
Confidence 3344444444444444433 1334444444444444455555555555444444322 3344444444444444444
Q ss_pred HHHHHHhcCC---CC----------------ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 039792 615 DAYETFGSTT---WK----------------DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 615 ~A~~~~~~~~---~~----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
+|.+.|++.. +. ....|..+...|...|++++|.+.|++..+ +.|+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 4444444322 11 124556666666666666666666666665 45543
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.29 E-value=1.6e-06 Score=77.56 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=71.1
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV 705 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 705 (819)
+...|..+...+...|++++|+..|++.+. +.|+. ..|..+..+|...|++++|...
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------------------- 77 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHS-------------------- 77 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH--------------------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHH--------------------
Confidence 344556666677777777777777777776 55643 4566666677777766666555
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 78 ----------------~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 78 ----------------YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp ----------------HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677888899999999999999999999999888765
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=6.1e-05 Score=76.53 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=149.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CH
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLG-SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC-G-SL 613 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~ 613 (819)
...+..++|+++++++... .|+ ...|+.--..+...| .++++..+++.++...++ +..+|+.-...+.+. + +.
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 3345557889988888874 454 444555555566667 589999999999988776 777888777777776 6 88
Q ss_pred HHHHHHHhcCC---CCChHhHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCC---
Q 039792 614 EDAYETFGSTT---WKDVACWNSMICTNAHHGEPM--------KALLLFREMIIEGLEPN-YITFVGVLSACSHAGL--- 678 (819)
Q Consensus 614 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--- 678 (819)
+++.++++++. .+|..+|+--.....+.|.++ ++++.++++++ ..|+ ...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcccccc
Confidence 89999998877 456677876655555555555 89999999998 5674 4678888888888776
Q ss_pred ----HHHHHHHHHHHHh-cCCccCchHH-HHHHHHhhcc-------cc-----h----hhhHHHHHHHHHccC------C
Q 039792 679 ----IEDGLDHFQSMAG-FGIEPGMEHY-ASVVSLLGRN-------VW-----N----VELGRYAAEMAISID------P 730 (819)
Q Consensus 679 ----~~~a~~~~~~m~~-~g~~p~~~~y-~~li~~l~r~-------~w-----~----~~~a~~~~~~~~~~~------p 730 (819)
++++++++++++. ..-..+.-+| ..++...|+. .| . ...-...+..++... +
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 7889999888887 3333333333 3445544443 12 0 111122222222222 4
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 731 MDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 731 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
..+-+...|+.+|...|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6677888999999999999999999999864
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=6.9e-06 Score=73.39 Aligned_cols=93 Identities=11% Similarity=-0.033 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSA 672 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 672 (819)
...+..+...|.+.|++++|.+.|++.. +.+...|..+..+|...|++++|+..|++..+ +.|+. ..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHH
Confidence 4455666677777777777777777665 44667788888888888888888888888887 67754 577788888
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 039792 673 CSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~ 691 (819)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888877
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=6.5e-06 Score=85.23 Aligned_cols=126 Identities=10% Similarity=0.016 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----------------hhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----------------ITFVGVLSACSHAGLIEDGLDHFQSMAGFG 693 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 693 (819)
.|..+...|.+.|++++|+..|++.++ +.|+. ..|..+..++.+.|++++|+..+++.++..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445555555555555555555555555 34443 455555556666666666666666665521
Q ss_pred Ccc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHH-HHHHHHHH
Q 039792 694 IEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADA-KQVRKKMD 760 (819)
Q Consensus 694 ~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~ 760 (819)
| +...|..+..+|...+ +.+.|...++++++++|+++.++..++.+|...|++++| .+.+++|.
T Consensus 227 --p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVN-DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2223333333333322 666677777888889999999999999999999999999 44566554
No 126
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=1.8e-06 Score=81.80 Aligned_cols=156 Identities=8% Similarity=-0.108 Sum_probs=99.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----------------
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTW---KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY---------------- 663 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------- 663 (819)
.+......|++++|.+.++.... .....|..+...+...|++++|+..|++.++ +.|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHH
Confidence 44445556677777776665432 2344677778888888999999999998887 45543
Q ss_pred -hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHH
Q 039792 664 -ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSN 741 (819)
Q Consensus 664 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 741 (819)
..+..+..+|...|++++|...+++..+. .| +...+..+..++...+ +.+.|...++++++++|+++..+..++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFG-FLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 46777788888999999999999988873 23 2334444444444332 7888999999999999999999999999
Q ss_pred HHHhCCCchHHH-HHHHHHHhCC
Q 039792 742 TFACNSMWADAK-QVRKKMDLDG 763 (819)
Q Consensus 742 ~y~~~g~~~~a~-~~~~~m~~~g 763 (819)
++...|+.+++. ..++.|-..|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 999998888877 5556554443
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.22 E-value=3.7e-06 Score=75.23 Aligned_cols=100 Identities=11% Similarity=-0.000 Sum_probs=79.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
+...+..+...+.+.|++++|...|++.. +.+...|..+..+|...|++++|++.|++.++ +.|+. ..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHH
Confidence 45566667778888888888888888765 45777888888889999999999999999988 67754 57888888
Q ss_pred HHHccCCHHHHHHHHHHHHh-cCCccC
Q 039792 672 ACSHAGLIEDGLDHFQSMAG-FGIEPG 697 (819)
Q Consensus 672 a~~~~g~~~~a~~~~~~m~~-~g~~p~ 697 (819)
++...|++++|...|++..+ .+..|.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 89999999999999888877 444443
No 128
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.21 E-value=5.5e-05 Score=76.08 Aligned_cols=225 Identities=8% Similarity=-0.014 Sum_probs=141.9
Q ss_pred hHHHHHHHHhcCC--C-CeeehhhhHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc---CChH
Q 039792 512 NKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQL--ENEEAIKLYLELLLSQQRPNEFTFAALITAA----SNL---GSLK 579 (819)
Q Consensus 512 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~---g~~~ 579 (819)
.++|..+++.+.. | +...|+.--..+...| ++++++++++.+.... +-+..+|+.--..+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666666553 2 2345665555666666 7777777777777642 11223333322222 333 6777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH--HHHHHHhcCC---CCChHhHHHHHHHHHhCCC------hHHHH
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLE--DAYETFGSTT---WKDVACWNSMICTNAHHGE------PMKAL 648 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~---~~~~~~~~~li~~~~~~g~------~~~A~ 648 (819)
++..+++.+.+..++ +...|+.-.-.+.+.|.++ ++.+.++++. ..|...|+.-.......|+ +++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 777888877777665 6677777777777777776 7777777766 4566677766666666565 77888
Q ss_pred HHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHH-HHHHHHHHHhcC-Ccc-CchHHHHHHHHhhcccchhhhHHHHHHH
Q 039792 649 LLFREMIIEGLEPNY-ITFVGVLSACSHAGLIED-GLDHFQSMAGFG-IEP-GMEHYASVVSLLGRNVWNVELGRYAAEM 724 (819)
Q Consensus 649 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~g-~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~ 724 (819)
+.+++++. ..|+. ..|+.+...+.+.|+..+ ..++..+..+.+ ..| +...+..+.+.+.+.+ +.+.|..+++.
T Consensus 207 ~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~-~~~~A~~~~~~ 283 (306)
T 3dra_A 207 NYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK-KYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 88888887 66754 567777777777776433 445665555422 122 3445566666665433 67788888888
Q ss_pred HHc-cCCCCchhHHHHHH
Q 039792 725 AIS-IDPMDSGSYTLLSN 741 (819)
Q Consensus 725 ~~~-~~p~~~~~~~~l~~ 741 (819)
+.+ .+|-...+|...++
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 886 78887777776554
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.20 E-value=2e-05 Score=71.80 Aligned_cols=128 Identities=9% Similarity=0.012 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLL 708 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l 708 (819)
.|..+...+...|++++|+..|++..+ ..|+ ..++..+..++...|++++|...+++..+.. ..+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 455555566666666666666666665 3443 3455556666666666666666666666521 11223333333333
Q ss_pred hcccchhhhHHHHHHHHHccCCCCchhHHHHHH--HHHhCCCchHHHHHHHHHHh
Q 039792 709 GRNVWNVELGRYAAEMAISIDPMDSGSYTLLSN--TFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 709 ~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+.+ +.+.|...+++++++.|++...+..++. .+...|++++|.+.+++..+
T Consensus 92 ~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 3322 6666777777778888888877755444 48888999999998887653
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.19 E-value=2.4e-05 Score=66.91 Aligned_cols=115 Identities=13% Similarity=0.200 Sum_probs=61.9
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
..|..+...+...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+++++.+.. ..+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555555555566666666665555 2343 2345555555555666666666665555421 1122333333333
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCC
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNS 747 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 747 (819)
+.+.+ +.+.|...++++++..|+++..+..++.++...|
T Consensus 87 ~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQG-DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 33322 5555666666666677777777777777765543
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.19 E-value=1.8e-05 Score=68.87 Aligned_cols=118 Identities=8% Similarity=-0.008 Sum_probs=79.1
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV 705 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 705 (819)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.+++..+.. ..+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 445667777777777777777777777776 4554 3566667777777777777777777776621 11233444444
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCC
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSM 748 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 748 (819)
..+.+.+ +.+.|...++++++++|.+...+..++.+|...|+
T Consensus 92 ~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMK-DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHh-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 4444332 66777777788888888888888888888877654
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.18 E-value=2.5e-05 Score=67.46 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccC
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAG 677 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 677 (819)
.....|.+.|++++|.+.|++.. +.+...|..+..+|...|++++|++.|++.++ +.|+. ..|..+..++...|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHCC
Confidence 34444444555555555444433 23344455555555555555555555555554 34433 34455555555555
Q ss_pred CHHHHHHHHHHHHh
Q 039792 678 LIEDGLDHFQSMAG 691 (819)
Q Consensus 678 ~~~~a~~~~~~m~~ 691 (819)
++++|.+.|++..+
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.18 E-value=1.2e-05 Score=76.26 Aligned_cols=151 Identities=13% Similarity=0.005 Sum_probs=87.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CChHhHHHHHHHHHhCCCh
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW---------KDVACWNSMICTNAHHGEP 644 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~ 644 (819)
..|++++|.++++.+.. .+......+..+...|...|++++|.+.+++... ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777774444432 2223455666666677777777777666655431 1223555666666666777
Q ss_pred HHHHHHHHHHHHcC-CCC-C----chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhH
Q 039792 645 MKALLLFREMIIEG-LEP-N----YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELG 718 (819)
Q Consensus 645 ~~A~~~~~~m~~~g-~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a 718 (819)
++|.+.+++..+.- -.| + ...+..+...+...|++++|...+++..+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------- 135 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV--------------------------- 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------------------------
Confidence 77766666665410 012 1 12355555566666666666666665543
Q ss_pred HHHHHHHHccCC--CC----chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 719 RYAAEMAISIDP--MD----SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 719 ~~~~~~~~~~~p--~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+ ++ ...+..++.+|...|++++|.+.+++..+
T Consensus 136 ---------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 136 ---------YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 211 11 23467889999999999999988887754
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.17 E-value=8.2e-05 Score=75.30 Aligned_cols=159 Identities=11% Similarity=-0.009 Sum_probs=114.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-c----hhHHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQ-QRPNEF----TFAALITAASNLGSLKHGQQFHNHLIKLGLDF-D----SFITSA 602 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~ 602 (819)
.+..+...|++++|.+++++..... ..|+.. .+..+...+...++++.|...+..+.+..... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888988888877632 122221 23345556677788999999999888743322 2 236888
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC-----C-CC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-chhHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT-----W-KD----VACWNSMICTNAHHGEPMKALLLFREMIIE----GLEPN-YITFV 667 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~-----~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 667 (819)
+...|...|++++|.+.|+++. . .+ ..+|..+...|...|++++|++.+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999998887655 1 22 236788889999999999999999988752 22222 35688
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHh
Q 039792 668 GVLSACSHAG-LIEDGLDHFQSMAG 691 (819)
Q Consensus 668 ~ll~a~~~~g-~~~~a~~~~~~m~~ 691 (819)
.+..++.+.| .+++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888999999 46999999988865
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.16 E-value=4.4e-05 Score=77.31 Aligned_cols=159 Identities=12% Similarity=0.003 Sum_probs=105.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCChHHHHHHHHHHHHhCCC---Cc--hhHHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQQRPNE-----FTFAALITAASNLGSLKHGQQFHNHLIKLGLD---FD--SFITSA 602 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~~ 602 (819)
.+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+....+.... +. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 455666777777777777766654221111 12233444556777888888888777653221 11 346777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC-----CCC-----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC-chhHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT-----WKD-----VACWNSMICTNAHHGEPMKALLLFREMIIEG----LEPN-YITFV 667 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~t~~ 667 (819)
+...|...|++++|.+.|++.. .++ ..+|+.+...|...|++++|+..+++.++.. ..+. ..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8888888888888888887654 222 2477888888889999999999988877521 1111 35677
Q ss_pred HHHHHHHccCCHHHH-HHHHHHHHh
Q 039792 668 GVLSACSHAGLIEDG-LDHFQSMAG 691 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a-~~~~~~m~~ 691 (819)
.+..++...|++++| ..++++...
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 888889999999999 777777654
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.16 E-value=2.4e-05 Score=67.65 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVS 706 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~ 706 (819)
..|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|.+.+++.... .|+ ...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 3455566666666677777777766665 3443 345666666666677777777776666652 122 233444444
Q ss_pred HhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCch
Q 039792 707 LLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWA 750 (819)
Q Consensus 707 ~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 750 (819)
.+.+.+ +.+.|...+++++++.|+++..+..++.+|...|+++
T Consensus 89 ~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLN-KHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhC-CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 443332 6667777777888888888888999999988888763
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.14 E-value=1.8e-05 Score=73.17 Aligned_cols=115 Identities=8% Similarity=0.065 Sum_probs=70.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH-HHhCCCh--HHH
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT-NAHHGEP--MKA 647 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~-~~~~g~~--~~A 647 (819)
..|+++.|...++...+..+. +...+..+...|...|++++|...|++.. +.+...|..+... |...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 345555555556555555433 45566666666666666666666666544 3355566666666 6666776 777
Q ss_pred HHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 648 LLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+..|++..+ ..|+. ..+..+...+...|++++|...|+++.+
T Consensus 101 ~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALA--LDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777777776 45653 4566666677777777777777777766
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.14 E-value=1.9e-05 Score=69.93 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=71.7
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
..+..+...+...|++++|+..|++.+. ..|+. ..|..+..++...|++++|...
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~---------------------- 74 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQS---------------------- 74 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHH----------------------
Confidence 3455566677777888888888887777 56654 4566666677777766666555
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 75 --------------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 75 --------------YSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp --------------HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566677899999999999999999999999999988765
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.14 E-value=3.7e-05 Score=69.88 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=84.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH 641 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 641 (819)
+..+...+...|+++.|...+....+..+. +...+..+...|...|++++|.+.|++.. +.+...|..+...+...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 444455556666666666666666665443 56666667777777777777777776654 34566777788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCc-hhHH--HHHHHHHccCCHHHHHHHHHHHHh
Q 039792 642 GEPMKALLLFREMIIEGLEPNY-ITFV--GVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~-~t~~--~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
|++++|.+.|++..+ +.|+. ..+. .....+...|++++|.+.+.....
T Consensus 95 ~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888887 55654 3443 333346677888888888876644
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.13 E-value=0.00016 Score=73.15 Aligned_cols=167 Identities=11% Similarity=-0.055 Sum_probs=108.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCC----hH
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLGLDFD-----SFITSALIDMYAKCGSLEDAYETFGSTT-----WKD----VA 629 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~----~~ 629 (819)
.+...+..+...|++++|...+....+...... ...+..+...|...|++++|.+.+++.. ..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455667788888888888887776543321 1223445666777788888888776543 111 33
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCc-----hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIE-GLEPNY-----ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYAS 703 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 703 (819)
+|+.+...|...|++++|+..|++..+. ...|+. .++..+...|...|++++|..++++..+..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~---------- 226 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS---------- 226 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH----------
Confidence 6777888888888888888888887631 022331 367777778888888888888877765310
Q ss_pred HHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHH-HHHHHHHH
Q 039792 704 VVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADA-KQVRKKMD 760 (819)
Q Consensus 704 li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~ 760 (819)
.. ....+.-+..|..++.+|...|++++| ...+++..
T Consensus 227 -------------------~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 227 -------------------CR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp -------------------HH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -------------------Hh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 00 000111246788999999999999999 77676654
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2e-05 Score=67.99 Aligned_cols=95 Identities=14% Similarity=0.029 Sum_probs=73.6
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
..|..+...+...|++++|+..|++.++ +.|+. ..|..+..++.+.|++++|...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~---------------------- 60 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIAD---------------------- 60 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHH----------------------
Confidence 4566677777888888888888888887 56654 5677777777777777766655
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 61 --------------~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 61 --------------CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp --------------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4555667888889999999999999999999999988765
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=1.4e-05 Score=86.90 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=75.3
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
.+.+.|++++|...++++++..+. +...+..+..+|.+.|++++|.+.+++.. +.+..+|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 455677888888888877776544 56677777777777777777777777654 34556777777777777777777
Q ss_pred HHHHHHHHHcCCCCCc-hhHHHHHHH--HHccCCHHHHHHHHH
Q 039792 648 LLLFREMIIEGLEPNY-ITFVGVLSA--CSHAGLIEDGLDHFQ 687 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~-~t~~~ll~a--~~~~g~~~~a~~~~~ 687 (819)
++.|++..+ +.|+. ..+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776 45643 344444444 666677777777766
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.09 E-value=5.1e-05 Score=64.82 Aligned_cols=91 Identities=14% Similarity=0.219 Sum_probs=42.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH 641 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 641 (819)
+..+...+...|+++.|..+++.+.+..+. +...+..+...|.+.|++++|...|+++. +.+..+|..+...|...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 333444444444444444444444443321 33344444444444455555444444433 22344445555555555
Q ss_pred CChHHHHHHHHHHHH
Q 039792 642 GEPMKALLLFREMII 656 (819)
Q Consensus 642 g~~~~A~~~~~~m~~ 656 (819)
|++++|...|+++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555554
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.09 E-value=2e-05 Score=72.87 Aligned_cols=130 Identities=10% Similarity=0.090 Sum_probs=100.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHhcCCH--H
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM-YAKCGSL--E 614 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 614 (819)
...|++++|+..|++..... +.+...+..+...+...|+++.|...++.+.+..+. +...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 45678888888888877652 446678888888889999999999999998887654 67777888888 7788998 9
Q ss_pred HHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 039792 615 DAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLS 671 (819)
Q Consensus 615 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 671 (819)
+|...|++.. +.+...|..+...|...|++++|+..|++..+ +.|+......++.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCccHHHHHH
Confidence 9999998766 44677888899999999999999999999998 6777654444443
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.06 E-value=1.8e-05 Score=67.77 Aligned_cols=95 Identities=14% Similarity=-0.035 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLL 708 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l 708 (819)
.|..+...+.+.|++++|+..|++.++ ..|+. ..|..+..++...|++++|+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~------------------------ 72 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAII------------------------ 72 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHH------------------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHH------------------------
Confidence 345556667777777777777777777 56654 456666667777776665554
Q ss_pred hcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 709 GRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 709 ~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.++++++++|+++..+..|+.+|...|++++|...+++..+.
T Consensus 73 ------------~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 73 ------------ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp ------------HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777888999999999999999999999999999887653
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.04 E-value=7.8e-05 Score=73.14 Aligned_cols=130 Identities=12% Similarity=-0.028 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHc
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSH 675 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~ 675 (819)
.+..++...|++++|.++|+... .|+......+...+.+.|++++|+..|++... .|+. ..+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHHHHHHHHHHHHHH
Confidence 34455555666666666666554 33222444444455566666666666654332 1211 245555556666
Q ss_pred cCCHHHHHHHHHHHHhcCCccCch-----HHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHH
Q 039792 676 AGLIEDGLDHFQSMAGFGIEPGME-----HYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLL 739 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~~g~~p~~~-----~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l 739 (819)
.|++++|+..|++.......|... ..+..+..+| +.+.|...++++++.+|+ +.++..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG----r~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG----NESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 666666666666555322213210 1111222222 445555555555555555 4444444
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.04 E-value=3.2e-05 Score=70.46 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=63.6
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVV 705 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li 705 (819)
...|..+...|...|++++|++.|++.++ +.|+. ..|..+..+|...|++++|+..|++.++.. |+ ...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34566677777777777777777777777 55643 456667777777777777777666655411 21 22233333
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHH
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLS 740 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~ 740 (819)
..+.+.+ +.+.|...++++++++|+++..|...+
T Consensus 87 ~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMA-DYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3332221 455555556666666666666554444
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.03 E-value=4.2e-05 Score=63.95 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=67.0
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVS 706 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 706 (819)
...|..+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~---------------------- 61 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVD---------------------- 61 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHH----------------------
Confidence 34555566666666666666666666665 34432 345555555555555555544
Q ss_pred HhhcccchhhhHHHHHHHHHccCCC--CchhHHHHHHHHHhC-CCchHHHHHHHHHHhCC
Q 039792 707 LLGRNVWNVELGRYAAEMAISIDPM--DSGSYTLLSNTFACN-SMWADAKQVRKKMDLDG 763 (819)
Q Consensus 707 ~l~r~~w~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g 763 (819)
.+++++++.|+ ++..+..++.+|... |++++|.+.+++..+..
T Consensus 62 --------------~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 62 --------------CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp --------------HHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred --------------HHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 45566667788 888999999999999 99999999999886543
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.02 E-value=3.4e-05 Score=73.02 Aligned_cols=128 Identities=11% Similarity=0.053 Sum_probs=69.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CC-C----h
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIK----LGLD-FDSFITSALIDMYAKCGSLEDAYETFGSTT-----WK-D----V 628 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~-~----~ 628 (819)
++..+...+...|+++.|...++...+ .+.. ....++..+...|...|++++|.+.+++.. .+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 344444444444444444444444433 1111 123344555555666666666655555432 11 2 2
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGL---EPN--YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..+..+...+...|++++|...+++..+..- .|. ..++..+...+...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2455666667777777777777777654210 111 12356667778888888888888887776
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.01 E-value=6.2e-05 Score=65.89 Aligned_cols=99 Identities=9% Similarity=-0.046 Sum_probs=72.8
Q ss_pred CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHH
Q 039792 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASV 704 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~l 704 (819)
.+...|..+...+...|++++|+..|++.++ ..|+. ..+..+..++...|++++|...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~------------------- 65 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALAD------------------- 65 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH-------------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHH-------------------
Confidence 3455666777777777777777777777776 45543 4566666666666666665544
Q ss_pred HHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 705 VSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 705 i~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 66 -----------------~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 66 -----------------CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp -----------------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55666778888999999999999999999999999988764
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.00 E-value=5.4e-06 Score=83.46 Aligned_cols=189 Identities=8% Similarity=-0.089 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAAS 573 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 573 (819)
..+..+...+.+.|++++|...|++..+ | +...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445556666677777777777766543 2 45566667777777777777777777776542 234566667777777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHH
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFRE 653 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 653 (819)
..|++++|...+..+.+..+. +...+...+....+.++.......-......+......+. .+ ..|+.++|++.+++
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLT-RL-IAAERERELEECQR 160 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHH-HH-HHHHHHHHHTTTSG
T ss_pred HcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HH-HHHHHHHHHHHHHh
Confidence 777788777777777654321 1111111111111111111112222222233433333332 22 25777888888777
Q ss_pred HHHcCCCCCchhHH-HHHHHHHcc-CCHHHHHHHHHHHHh
Q 039792 654 MIIEGLEPNYITFV-GVLSACSHA-GLIEDGLDHFQSMAG 691 (819)
Q Consensus 654 m~~~g~~p~~~t~~-~ll~a~~~~-g~~~~a~~~~~~m~~ 691 (819)
..+ ..|+..... .+...+... +.+++|.++|.++.+
T Consensus 161 al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 161 NHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp GGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 766 567654332 332333333 567778888877765
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.99 E-value=4.1e-05 Score=67.68 Aligned_cols=101 Identities=12% Similarity=-0.053 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-------c------hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-------Y------ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP 696 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p 696 (819)
.|......+.+.|++++|+..|++.++ +.|+ . ..|..+..++.+.|++++|+..+++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 355566777888999999999999988 6676 2 2788888899999999999888766542
Q ss_pred CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhH----HHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 697 GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSY----TLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 697 ~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+.+..+++|+++..| +..+.+|...|++++|...+++..+
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3566678899999999 9999999999999999999998876
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.97 E-value=6.6e-05 Score=65.11 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=37.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCC
Q 039792 566 AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHG 642 (819)
Q Consensus 566 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 642 (819)
..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|.+.|++.. +.+...|..+...|...|
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK 98 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence 33333334444444444444443333221 23333334444444444444444443322 223334444444455555
Q ss_pred ChHHHHHHHHHHHH
Q 039792 643 EPMKALLLFREMII 656 (819)
Q Consensus 643 ~~~~A~~~~~~m~~ 656 (819)
++++|++.|++..+
T Consensus 99 ~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 99 DYTKAMDVYQKALD 112 (133)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.96 E-value=6.2e-05 Score=77.83 Aligned_cols=124 Identities=10% Similarity=-0.083 Sum_probs=86.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--------------hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFD--------------SFITSALIDMYAKCGSLEDAYETFGSTT---WKD 627 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~ 627 (819)
+..+...+.+.|+++.|...++..++..+... ...+..+..+|.+.|++++|.+.|++.. +.+
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 229 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 229 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 33344444444445555544444444433211 4677778888888888888888887765 446
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH-HHHHHHHH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG-LDHFQSMA 690 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a-~~~~~~m~ 690 (819)
...|..+..+|...|++++|+..|++.++ +.|+. ..+..+..++...|+.++| ...++.|.
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888889999999999999999988 67764 5677788888888888888 45666664
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.96 E-value=6.8e-05 Score=64.67 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=54.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH 641 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 641 (819)
+..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|.+.+++.. +.+...|..+...|...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 334444444555555555555555444322 34444455555555555555555554433 22344555555555666
Q ss_pred CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccC
Q 039792 642 GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAG 677 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 677 (819)
|++++|.+.|++..+ ..|+. ..+..+..++...|
T Consensus 94 ~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 94 NKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHh
Confidence 666666666666655 34432 34444444444444
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.94 E-value=4.5e-05 Score=65.92 Aligned_cols=90 Identities=8% Similarity=0.039 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--------hhHHH
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--------ITFVG 668 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ 668 (819)
+.-+...|.+.|++++|.+.|++.. +.+...|+.+..+|...|++++|++.|++.++ +.|+. .+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHHHH
Confidence 3445556666666666666665543 33455666666666666666666666666655 33321 23555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 039792 669 VLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 669 ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+..++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566666666666666666554
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.92 E-value=8.4e-05 Score=65.67 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSAC 673 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 673 (819)
..+..+...+.+.|++++|.+.|++.. +.+...|..+..+|...|++++|+..|++.++ +.|+. ..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 344556666777777777777777654 44666777788888888888888888888887 56754 5677777788
Q ss_pred HccCCHHHHHHHHHHHHh
Q 039792 674 SHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~ 691 (819)
...|++++|...|+...+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888887776
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.91 E-value=0.00011 Score=66.93 Aligned_cols=94 Identities=9% Similarity=-0.006 Sum_probs=70.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
+...+..+...|.+.|++++|.+.|++.. +.+...|..+..+|...|++++|+..|++.++ +.|+. ..|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34456666677777777777777777655 34666777788888888888888888888887 56764 56777778
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 039792 672 ACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 672 a~~~~g~~~~a~~~~~~m~~ 691 (819)
++...|++++|...|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 88888888888888888877
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00011 Score=63.35 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHc
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSH 675 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 675 (819)
+..+...+.+.|++++|.+.|++.. +.+...|..+..+|...|++++|+..|++.++ +.|+. ..|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHH
Confidence 3344444555555555555554433 23444555555555555555555555555555 44543 345555555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 039792 676 AGLIEDGLDHFQSMAG 691 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~ 691 (819)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 6666666665555554
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.89 E-value=6.9e-05 Score=73.54 Aligned_cols=137 Identities=10% Similarity=-0.037 Sum_probs=100.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCh----HhHHHHHHHHHhC
Q 039792 567 ALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW-KDV----ACWNSMICTNAHH 641 (819)
Q Consensus 567 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~li~~~~~~ 641 (819)
.+...+...|++++|.++++.+...++. +. ....+...+.+.|++++|+..|+.... ++. ..+..+..++...
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 3455567778888888888777665432 23 556666788999999999999987663 322 3677788899999
Q ss_pred CChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 642 GEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
|++++|+..|++.......|.. ........++.+.|+.++|...|+++... .|+...+..|.+.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL~~~ 250 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAALKDP 250 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHhCC
Confidence 9999999999999853333652 35677788899999999999999999883 2444444455443
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.88 E-value=0.00013 Score=66.09 Aligned_cols=96 Identities=6% Similarity=-0.012 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCC----------Cc-hhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIE------GLEP----------NY-ITFVGVLSACSHAGLIEDGLDHFQSMAGF 692 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p----------~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 692 (819)
.|......+.+.|++++|+..|++.++. .-.| .. ..|..+..+|.+.|+++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~------------ 80 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLH------------ 80 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHH------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHH------------
Confidence 4556666777777777777777777662 0012 21 23444444555555544
Q ss_pred CCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 693 GIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 693 g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 81 ------------------------~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 81 ------------------------EAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp ------------------------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 445556677778899999999999999999999999999887765
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=0.00017 Score=63.88 Aligned_cols=112 Identities=9% Similarity=-0.009 Sum_probs=61.9
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN----YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHY 701 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y 701 (819)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...+++..+. .| +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 445566666666666666666666666665 4555 344555566666666666666666665542 12 12222
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 702 ASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 702 ~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
..+...+.+.+ +.+.|...++++++++|++...+..+..+.
T Consensus 103 ~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLG-RLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 22333332221 555566666666666666666665555543
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.87 E-value=0.0017 Score=65.58 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCC-hHHHHHHHH
Q 039792 579 KHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG--SLEDAYETFGSTT---WKDVACWNSMICTNAHHGE-PMKALLLFR 652 (819)
Q Consensus 579 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 652 (819)
+++..+++.++...++ +..+|+.-...+.+.| .++++.++++++. ++|..+|+.-.......|. .+++++.++
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3444444444444433 4444444444444444 2455555554444 3344445444444444444 345555555
Q ss_pred HHHH
Q 039792 653 EMII 656 (819)
Q Consensus 653 ~m~~ 656 (819)
++++
T Consensus 170 ~~I~ 173 (331)
T 3dss_A 170 SLIT 173 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.86 E-value=0.0012 Score=66.79 Aligned_cols=229 Identities=11% Similarity=0.071 Sum_probs=148.7
Q ss_pred hcCCh-HHHHHHHHhcCCCCe---eehhhhHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039792 508 KCFSN-KDARLVFDEMNQRDI---VVWNAMLLGYTQQLE----------NEEAIKLYLELLLSQQRPNEFTFAALITAAS 573 (819)
Q Consensus 508 ~~g~~-~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 573 (819)
+.|.+ ++|..+++.+..-|+ ..|+.--..+...+. +++++.+++.+.... +-+..+|..-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 34443 467777777765333 344443333322222 577888888887642 346667776666666
Q ss_pred ccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcCC---CCChHhHHHHHHHHHhC------
Q 039792 574 NLG--SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS-LEDAYETFGSTT---WKDVACWNSMICTNAHH------ 641 (819)
Q Consensus 574 ~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~~~------ 641 (819)
..+ .++++..+++.+.+..+. +...|+.-.-.+.+.|. ++++.+.++++. ..|..+|+.....+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 666 478888899998888766 77777777777777887 588888888766 55777887765555443
Q ss_pred --------CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc-----------CCHHHHHHHHHHHHhcCCccCc-hH
Q 039792 642 --------GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA-----------GLIEDGLDHFQSMAGFGIEPGM-EH 700 (819)
Q Consensus 642 --------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~-----------g~~~~a~~~~~~m~~~g~~p~~-~~ 700 (819)
+.++++++.+++.+. +.|+. ..|+.+-..+.+. +.++++++.++++.+ +.|+. -.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~ 274 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWC 274 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred ccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchH
Confidence 457889999999988 78865 4566555555554 457888888888876 23443 11
Q ss_pred HHHHHHH---hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 701 YASVVSL---LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 701 y~~li~~---l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
+-.++.. +...+ ..+.....+.++.++||...+.|..|..-+
T Consensus 275 l~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 275 LLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHCTTT-THHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc-cHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 2122211 11111 344566788888888998888887776554
No 165
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.00035 Score=77.38 Aligned_cols=172 Identities=10% Similarity=-0.008 Sum_probs=116.4
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHhcCC---CCChHhHHHHHHHHHhCC-
Q 039792 577 SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS----------LEDAYETFGSTT---WKDVACWNSMICTNAHHG- 642 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g- 642 (819)
.-++|...++.+++.+++ +..+|+.--..+.+.|+ ++++.+.++.+. +++..+|+.-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345666777777776655 55556655555555555 777777777665 556667777777777777
Q ss_pred -ChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccC-CHHHHHHHHHHHHh-cCCccCchHHHHH-HHHhhcc------
Q 039792 643 -EPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAG-LIEDGLDHFQSMAG-FGIEPGMEHYASV-VSLLGRN------ 711 (819)
Q Consensus 643 -~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~-~g~~p~~~~y~~l-i~~l~r~------ 711 (819)
+++++++.++++.+ ..|. ..+|+.-..++.+.| .+++++++++++++ ..-..+.-+|... +..+.+.
T Consensus 123 ~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 55888888888887 5664 456777777777777 77888888877766 2212222222221 1222100
Q ss_pred ----cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchH
Q 039792 712 ----VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWAD 751 (819)
Q Consensus 712 ----~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 751 (819)
...++.+...++++++++|+|..+|..+.+++...|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0156788889999999999999999999999999998666
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.85 E-value=0.00024 Score=59.79 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSL 707 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~ 707 (819)
.|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...+++..+.. | +...+..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 444555555556666666666666555 3343 2344555555555555555555555444311 1 11222222222
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
+...+ +.+.|...++++++++|+++..+..++.+
T Consensus 82 ~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLN-RFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 22211 34444444445555555555444444433
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.83 E-value=0.0001 Score=61.54 Aligned_cols=94 Identities=7% Similarity=-0.094 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--c-hhHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN--Y-ITFVGV 669 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~-~t~~~l 669 (819)
+...+..+...|.+.|++++|...|++.. +.+...|..+...+...|++++|++.|++..+ ..|+ . ..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHH
Confidence 34455667777777788888887777654 44566778888888888888888888888887 5665 3 567777
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHh
Q 039792 670 LSACSHA-GLIEDGLDHFQSMAG 691 (819)
Q Consensus 670 l~a~~~~-g~~~~a~~~~~~m~~ 691 (819)
..++... |++++|.+.++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 7888888 888888888888876
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.80 E-value=0.00033 Score=58.91 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHcc
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHA 676 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 676 (819)
..+...+...|++++|.+.|++.. +.+...|..+...|...|++++|...+++..+ ..|+ ...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHH
Confidence 333444444444444444444332 22334444444444445555555555555544 2333 23344444455555
Q ss_pred CCHHHHHHHHHHHHh
Q 039792 677 GLIEDGLDHFQSMAG 691 (819)
Q Consensus 677 g~~~~a~~~~~~m~~ 691 (819)
|++++|.+.+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555554443
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.80 E-value=0.00011 Score=79.65 Aligned_cols=127 Identities=8% Similarity=0.010 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----------------hhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----------------ITFVGVLSACSHAGLIEDGLDHFQSMAGFG 693 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 693 (819)
.|..+...|.+.|++++|+..|++.++ +.|+. ..|..+..+|.+.|++++|+..+++.++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 444455555555555555555555555 33432 445556666666666666666666665521
Q ss_pred Ccc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHH-HHHHHHh
Q 039792 694 IEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQ-VRKKMDL 761 (819)
Q Consensus 694 ~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~ 761 (819)
| +...|..+..+|... .+.+.|...++++++++|++..++..++.+|...|++++|.+ .+++|..
T Consensus 348 --p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 --SANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 222333333333322 266677777888889999999999999999999999998874 4565644
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.80 E-value=0.00015 Score=62.51 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=57.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----C----hHhHHHHH
Q 039792 566 AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW--K----D----VACWNSMI 635 (819)
Q Consensus 566 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li 635 (819)
..+-..+.+.|++++|...|+..++..+. +...+..+..+|.+.|++++|.+.|++... | + ..+|..+.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33444444555555555555555554433 444555555555555555555555554331 1 1 12566677
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCchhHH
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNYITFV 667 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 667 (819)
..|...|++++|++.|++.++ ..||..+..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 788888999999999998887 566654433
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.76 E-value=7.8e-05 Score=67.15 Aligned_cols=135 Identities=11% Similarity=-0.002 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCh----HhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTTW-----KDV----ACWNSMICTNAHHGEPMKALLLFREMIIEGL-EPN---- 662 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 662 (819)
..++..+...|...|++++|.+.+++... ++. .++..+...|...|++++|++.+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34566677777777777777777766541 121 3566667777777777777777777654210 011
Q ss_pred chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 663 YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 663 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
...+..+...+...|++++|.+.+++..+..... .-.+..+..+..++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------------------------------KDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc------------------------------cchHhHHHHHHHHHHH
Confidence 2345566666777777777777776654310000 0001124568889999
Q ss_pred HHhCCCchHHHHHHHHHHh
Q 039792 743 FACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 743 y~~~g~~~~a~~~~~~m~~ 761 (819)
|...|++++|.+.+++..+
T Consensus 139 ~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.75 E-value=0.00024 Score=61.99 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSA 672 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 672 (819)
...+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+..+++.++ +.|+. ..+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 3444445555555555555555554433 22344555555556666666666666666655 34543 345555556
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 039792 673 CSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~ 691 (819)
+...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666554
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.75 E-value=8.3e-05 Score=80.88 Aligned_cols=116 Identities=10% Similarity=0.051 Sum_probs=68.6
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchh
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNV 715 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~ 715 (819)
+.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|.+.+++..+. .|+ ...|..+..+|.+.+ +.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g-~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALG-KF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHT-CH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC-CH
Confidence 3445566666666666655 44543 45555555666666666666666665552 122 223333333333222 56
Q ss_pred hhHHHHHHHHHccCCCCchhHHHHHHH--HHhCCCchHHHHHHHH
Q 039792 716 ELGRYAAEMAISIDPMDSGSYTLLSNT--FACNSMWADAKQVRKK 758 (819)
Q Consensus 716 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~ 758 (819)
+.|...++++++++|+++..+..++.+ |...|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 666667777888899999999999888 8889999999999873
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.74 E-value=0.008 Score=61.01 Aligned_cols=169 Identities=13% Similarity=0.009 Sum_probs=79.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhH-HHHHHHHhhccC-chHhHHHHHHHHHHhCCccchhhHHHHHHHHHhc-C-ChHH
Q 039792 439 EEKLSEALDLFHEMRVGFVPPGLLT-FVSLLGLSSSVF-SLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKC-F-SNKD 514 (819)
Q Consensus 439 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~~~ 514 (819)
.+..++|+++++++... .|+..| ++.--..+...+ .++++..+.+.+.....+ +..+++.-...+.+. + +.++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 33445566666555442 233222 222222222223 244444444444443332 333444433333333 4 5566
Q ss_pred HHHHHHhcCCC---CeeehhhhHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------
Q 039792 515 ARLVFDEMNQR---DIVVWNAMLLGYTQQLENE--------EAIKLYLELLLSQQRPNEFTFAALITAASNLGS------ 577 (819)
Q Consensus 515 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------ 577 (819)
+.++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 66666666553 3334443333333333333 6666666666542 3355555555555555554
Q ss_pred -hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 578 -LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 578 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
++++.+....++...+. |...|+.+-..+.+.|+
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 45555566666655544 55555555555555443
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.71 E-value=0.00015 Score=62.39 Aligned_cols=27 Identities=4% Similarity=0.101 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
.|..+...|...|++++|.+.|++..+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444555555555555555555554
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.69 E-value=0.00014 Score=62.07 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHc
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSH 675 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 675 (819)
+..+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.++ +.|+. ..+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 4445667778888888888887765 44677888888888888889999999988888 67865 567778888888
Q ss_pred cCCHHHHHHHHHHHHh
Q 039792 676 AGLIEDGLDHFQSMAG 691 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~ 691 (819)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888887765
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.65 E-value=0.00037 Score=59.87 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
+..+...|...|++++|...|++.. +.+...|..+...|...|++++|+..+++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3444444444555555554444432 22334444444444444444444444444443
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.63 E-value=0.00089 Score=57.50 Aligned_cols=86 Identities=16% Similarity=0.036 Sum_probs=36.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCC--CC-Ch---HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHH
Q 039792 604 IDMYAKCGSLEDAYETFGSTT--WK-DV---ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSAC 673 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~--~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~ 673 (819)
...+.+.|++++|.+.|++.. .| +. ..|..+...|...|++++|+..|++..+ ..|+. ..+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS--RYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHH
Confidence 334444444554444444433 11 11 2344444444444444444444444444 23332 2233344444
Q ss_pred HccCCHHHHHHHHHHHHh
Q 039792 674 SHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~ 691 (819)
...|++++|...|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444433
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.61 E-value=9.9e-05 Score=76.30 Aligned_cols=95 Identities=9% Similarity=0.015 Sum_probs=29.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 665 TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 665 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
.|..+..+|.+.|++++|+..+++.++. .| +...|..+..+|...+ +.+.|...++++++++|+++.++..|+.+.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELG-QMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4455555555555555555555555541 12 1223333333333221 556666666777777777777777777773
Q ss_pred -HhCCCchHHHHHHHHHHhC
Q 039792 744 -ACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 744 -~~~g~~~~a~~~~~~m~~~ 762 (819)
...+..+++.+++++|.+.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 3456677777777776543
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.60 E-value=0.00036 Score=65.62 Aligned_cols=90 Identities=14% Similarity=-0.010 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSAC 673 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 673 (819)
..+..+..+|.+.|++++|...+++.. +.+...|..+..+|...|++++|++.|++.++ +.|+. ..+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHH
Confidence 455556666666666666666666544 33455666666677777777777777777766 45644 3455555555
Q ss_pred HccCCHHHHH-HHHHHH
Q 039792 674 SHAGLIEDGL-DHFQSM 689 (819)
Q Consensus 674 ~~~g~~~~a~-~~~~~m 689 (819)
...|+.+++. ..+..|
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5555555544 333333
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.00095 Score=58.85 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
.|..+...|...|++++|.+.|++..+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.58 E-value=0.00022 Score=74.60 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=59.5
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVS 706 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 706 (819)
...|..+..+|.+.|++++|++.+++.++ +.|+. ..+..+..+|...|++++|...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~--------------------- 329 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALAD--------------------- 329 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHH---------------------
Confidence 34566666666666666777766666665 55543 3555555566666655555444
Q ss_pred HhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHH
Q 039792 707 LLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQV 755 (819)
Q Consensus 707 ~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 755 (819)
++++++++|++...+..++.++...++.+++.+.
T Consensus 330 ---------------l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 330 ---------------LKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp ---------------HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---------------HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888888888888888877776553
No 183
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.55 E-value=7.1e-05 Score=65.94 Aligned_cols=96 Identities=11% Similarity=-0.083 Sum_probs=78.1
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhh
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVEL 717 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~ 717 (819)
.+-+.+++|++.+++.++ +.|+. ..|..+..++...|+++.+...++ .++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHH
Confidence 344668889999999988 77865 577778888888777665554332 3467
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhCC-----------CchHHHHHHHHHHhC
Q 039792 718 GRYAAEMAISIDPMDSGSYTLLSNTFACNS-----------MWADAKQVRKKMDLD 762 (819)
Q Consensus 718 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-----------~~~~a~~~~~~m~~~ 762 (819)
|...++++++++|+++.+|..++++|...| ++++|.+.+++..+.
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 888999999999999999999999999875 899999999998764
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.49 E-value=0.00058 Score=61.21 Aligned_cols=93 Identities=17% Similarity=0.040 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-ch
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIE----GLEPN-YI 664 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 664 (819)
++..+...|...|++++|.+.+++.. .++ ...+..+...+...|++++|.+.+++..+. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 45555666666666666666665533 111 335667777888888888888888887652 11111 24
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 665 TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 665 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577788889999999999999988775
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.47 E-value=8.7e-05 Score=62.99 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=54.5
Q ss_pred hCCChHHHHHHHHHHHHcCC-CCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhh
Q 039792 640 HHGEPMKALLLFREMIIEGL-EPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVEL 717 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~ 717 (819)
..|++++|+..|++.++.+. .|+. ..+..+..++...|++++|...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~------------------------------ 51 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLA------------------------------ 51 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------------------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH------------------------------
Confidence 35677778888887776221 2433 456666677777777776666654
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 718 GRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 718 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 52 ------~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 52 ------NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp ------HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556677777777777777777777777777776654
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0015 Score=70.16 Aligned_cols=158 Identities=12% Similarity=0.062 Sum_probs=88.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-Cc
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQQRPN----------------EFTFAALITAASNLGSLKHGQQFHNHLIKLGLD-FD 596 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 596 (819)
...+.+.|++++|++.|.+..+...... ...+..+...|...|++++|.+.+..+.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3457788999999999988887532211 123556666777777777777777666542111 11
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--
Q 039792 597 S----FITSALIDMYAKCGSLEDAYETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-- 661 (819)
Q Consensus 597 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-- 661 (819)
. .+.+.+...+...|+.++|.++++... ..+ ..++..|...|...|++++|..++++....-...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 122333334445566666666665432 111 2345556666666667766666666665421111
Q ss_pred --Cc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 662 --NY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 662 --~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.. .++..++..|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 11 2455556666666666666666666543
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.41 E-value=0.00023 Score=60.23 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=54.8
Q ss_pred CCHHHHHHHHhcCCCC------ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHH
Q 039792 611 GSLEDAYETFGSTTWK------DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGL 683 (819)
Q Consensus 611 g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 683 (819)
|++++|.+.|++.... +...|..+...|...|++++|++.|++.++ ..|+. ..+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4444555555443321 234566677777777777888888888777 56654 46677777777888888888
Q ss_pred HHHHHHHh-cCCccCchHH
Q 039792 684 DHFQSMAG-FGIEPGMEHY 701 (819)
Q Consensus 684 ~~~~~m~~-~g~~p~~~~y 701 (819)
..+++... ..-.|+...|
T Consensus 82 ~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHH
Confidence 77777766 4434443333
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.40 E-value=0.00048 Score=60.83 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCC-------CCCc-hhH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGL-------EPNY-ITF----VGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~-~t~----~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.|+.+..++...|++++|+..+++.++ + .|+. ..| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 788888899999999999999999888 6 8976 467 8888999999999999998888765
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.40 E-value=0.0022 Score=55.01 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=49.8
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-C---hHhHHHHHHHHHhCC
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDS---FITSALIDMYAKCGSLEDAYETFGSTT--WK-D---VACWNSMICTNAHHG 642 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g 642 (819)
+...|++++|...++.+.+..+. +. ..+..+...|.+.|++++|...|++.. .| + ...+..+..+|...|
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 33444444444444444443322 12 344445555555666666665555543 22 2 345566667777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCch
Q 039792 643 EPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
++++|...|+++.+ ..|+..
T Consensus 91 ~~~~A~~~~~~~~~--~~p~~~ 110 (129)
T 2xev_A 91 KNTEAQQTLQQVAT--QYPGSD 110 (129)
T ss_dssp CHHHHHHHHHHHHH--HSTTSH
T ss_pred CHHHHHHHHHHHHH--HCCCCh
Confidence 88888888888777 456543
No 190
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.38 E-value=0.0014 Score=67.42 Aligned_cols=431 Identities=12% Similarity=0.080 Sum_probs=249.0
Q ss_pred ChhhhhHHHHHHHcCCChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q 039792 86 DTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACT 165 (819)
Q Consensus 86 ~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 165 (819)
.+.+|..|-.++.+.+.+.+|.+.| +...|...|..+|.+..+.|.+++-+..++-. ++. .-+...=+.++-+++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMA-RKK--ARESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTT-STT--CCSTTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHH--hcccccHHHHHHHHH
Confidence 4578999999999999999998887 44566777889999999999999998887643 443 345566778999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCC------------------------C
Q 039792 166 QLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLM------------------------V 221 (819)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~------------------------~ 221 (819)
+.+++.+-.++.. .||+.-...+-+-+...|.++.|.-+|..+. .
T Consensus 128 k~~rL~elEefl~-----------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 128 KTNRLAELEEFIN-----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp TSCSSSTTTSTTS-----------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred hhCcHHHHHHHHc-----------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998875433321 3666666677777788888888888876551 3
Q ss_pred CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC-CchhHHHHH
Q 039792 222 KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMG-MDVSVINVL 300 (819)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l 300 (819)
.++.+|..+-.+|+..+.+.-|.-.--.+.- .......++..|-..|.+++-..+++.-+ |.+ ....+++-|
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHH
Confidence 4778999999999999999887655444432 12233456777888999999888888765 333 356788888
Q ss_pred HHHhHhCCChHHHHHHHhccc----CC-------CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 039792 301 MDFYSKCGRVKMARRLFDEIE----VK-------NIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTS 369 (819)
Q Consensus 301 i~~~~~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 369 (819)
.-.|+|- +.++..+-++..- -| ....|.-++-.|.+-.+++.|... |.++ .|+...-......
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdi 343 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDI 343 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTT
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHH
Confidence 8888876 3344444333322 12 234577777777777777765432 2221 1111111122222
Q ss_pred hcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhc-------------CCCCcchH-HHHHHH
Q 039792 370 CGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVM-------------ADRNVVSY-NAMIEG 435 (819)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------------~~~~~~~~-~~li~~ 435 (819)
..+..+.+.--+..... +.-.+...+-|+..+...=|...+.++|.+. ...|...- .++-..
T Consensus 344 i~KVaN~EiyYKAi~FY----L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L 419 (624)
T 3lvg_A 344 ITKVANVELYYRAIQFY----LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNL 419 (624)
T ss_dssp GGGCSCSHHHHHHHHHH----TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHH----HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 23333333222222111 2223333445555544444444555555443 23333332 234444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHH
Q 039792 436 YSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDA 515 (819)
Q Consensus 436 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 515 (819)
|....+++. +..-+..|-+-..+..|.++- +. .-...-..-...|.+.++++++
T Consensus 420 ~IEEEDy~~-------------------LR~SId~ydNFD~i~LA~rLE----kH---eL~eFRrIAA~LYkkn~rw~qs 473 (624)
T 3lvg_A 420 FITEEDYQA-------------------LRTSIDAYDNFDNISLAQRLE----KH---ELIEFRRIAAYLFKGNNRWKQS 473 (624)
T ss_dssp HHHTTCCHH-------------------HHHTTSSCCCSCTTHHHHHHH----TC---SSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhhHHH-------------------HHHHHHHhccccHHHHHHHHh----hC---chHHHHHHHHHHHHhcccHHHH
Confidence 555544432 111122222222333332221 11 1112222334456666667666
Q ss_pred HHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 039792 516 RLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQ 583 (819)
Q Consensus 516 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 583 (819)
.++.++ -..|.--|...+..|+.+-|.++++-+.+.| +...|...+-.|...=+++-+.+
T Consensus 474 i~l~Kk-----DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 474 VELCKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp SSCSST-----TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 554432 1233334445556677777777777776654 33456666666666655555444
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0036 Score=67.08 Aligned_cols=189 Identities=8% Similarity=-0.088 Sum_probs=137.5
Q ss_pred HHHHHhcCChHHHHHHHHhcCCC-----Ce---------------eehhhhHHHHHhcCCHHHHHHHHHHHHHC-CCCCC
Q 039792 503 IDAYSKCFSNKDARLVFDEMNQR-----DI---------------VVWNAMLLGYTQQLENEEAIKLYLELLLS-QQRPN 561 (819)
Q Consensus 503 i~~~~~~g~~~~A~~~~~~~~~~-----~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~ 561 (819)
...+.+.|++++|.+.|..+.+. +. .++..+...|...|++++|.+.+.+.... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999987531 11 12567888999999999999999987642 11222
Q ss_pred HH---HHHHHHH-HHhccCChHHHHHHHHHHHH----hCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCC--------
Q 039792 562 EF---TFAALIT-AASNLGSLKHGQQFHNHLIK----LGLDF-DSFITSALIDMYAKCGSLEDAYETFGSTT-------- 624 (819)
Q Consensus 562 ~~---t~~~ll~-~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------- 624 (819)
.. .....+. .+...|+++.+..++..... .+..+ -..++..|...|...|++++|..++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 2223333 33567899999999988764 22222 24577889999999999999999987643
Q ss_pred CC-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHc--CC-CCC---chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 625 WK-DVACWNSMICTNAHHGEPMKALLLFREMIIE--GL-EPN---YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 625 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+ ....|..++..|...|++++|..++++.... .+ .|. ...+..+...+...|++++|...|....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2347888999999999999999999988652 12 121 13466677788999999999999988876
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.36 E-value=0.0012 Score=59.68 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
.+..+..+|.+.|++++|...+++.. +.+...|..+..+|...|++++|+..|++.++
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 44444444444555554444444333 22334444444455555555555555555444
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.32 E-value=0.0015 Score=70.48 Aligned_cols=85 Identities=12% Similarity=-0.072 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSA 672 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 672 (819)
...|..+..+|.+.|++++|...|++.. +.+...|..+..+|...|++++|+..|++.++ +.|+. ..+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3556666667777777777777776654 34556677777777777777777777777776 66654 456666666
Q ss_pred HHccCCHHHHH
Q 039792 673 CSHAGLIEDGL 683 (819)
Q Consensus 673 ~~~~g~~~~a~ 683 (819)
+.+.|+.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00069 Score=56.31 Aligned_cols=93 Identities=10% Similarity=-0.036 Sum_probs=65.9
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV 705 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 705 (819)
+...|..+...+...|++++|++.|++.++ +.|+. ..+..+..++...|++++|.+.+++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------------- 65 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL--------------- 65 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------
Confidence 345677778888888888888888888887 56754 567777778888888777776665554
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCC------chhHHHHHHHHHhCCCchHHHHHHH
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMD------SGSYTLLSNTFACNSMWADAKQVRK 757 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~ 757 (819)
+++|++ ...+..++.+|...|++++|.+.++
T Consensus 66 ---------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 66 ---------------------RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp ---------------------TSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ---------------------HhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 445555 5566777777777777776655443
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.28 E-value=0.00069 Score=69.92 Aligned_cols=91 Identities=11% Similarity=-0.010 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHH-H
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSA-C 673 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a-~ 673 (819)
.+..+..+|.+.|++++|...+++.. +.+...|..+..+|...|++++|+..|++.++ +.|+.. .+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
Confidence 44445555555555555555555443 23444555555566666666666666665554 445432 23333322 2
Q ss_pred HccCCHHHHHHHHHHHHh
Q 039792 674 SHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~ 691 (819)
...+..+++...|..|..
T Consensus 310 ~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 233445555555555543
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.27 E-value=0.00052 Score=74.08 Aligned_cols=108 Identities=15% Similarity=0.007 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH---cCCCCC---c-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII---EGLEPN---Y-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYA 702 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~ 702 (819)
+++.|...|...|++++|+.++++.++ .-+.|+ . .+++.|...|...|++++|..++++..+
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~----------- 421 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA----------- 421 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------
Confidence 567777777777777777777777653 113343 2 4688999999999999999999887653
Q ss_pred HHHHHhhcccchhhhHHHHHHHHHccCCCCc---hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCC
Q 039792 703 SVVSLLGRNVWNVELGRYAAEMAISIDPMDS---GSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEA 768 (819)
Q Consensus 703 ~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~ 768 (819)
..++. +.|++| ..+..|...+.+.|++++|..+++++++.-.+..|
T Consensus 422 ------------------i~~~~--lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 422 ------------------ILLVT--HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp ------------------HHHHH--TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred ------------------HHHHH--hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11111 223333 34567888889999999999999999886543333
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.13 E-value=0.0018 Score=67.54 Aligned_cols=87 Identities=9% Similarity=-0.088 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
+...+..+..+|.+.|++++|.+.+++.. +.+...|..+..+|...|++++|++.|++..+ +.|+. ..+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45677888889999999999999998765 34667888999999999999999999999998 67865 45666666
Q ss_pred HHHccCCHHHHHH
Q 039792 672 ACSHAGLIEDGLD 684 (819)
Q Consensus 672 a~~~~g~~~~a~~ 684 (819)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.12 E-value=0.0014 Score=55.07 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHH
Q 039792 646 KALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEM 724 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~ 724 (819)
+|++.|++..+ ..|+. ..+..+..++...|++++|...| ++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~------------------------------------~~ 44 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHL------------------------------------RA 44 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHH------------------------------------HH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHH------------------------------------HH
Confidence 46667777766 56654 45666666777777766666554 45
Q ss_pred HHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 725 AISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 725 ~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+++++|+++..|..++.+|...|++++|...+++..+
T Consensus 45 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 45 ALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567788888999999999999999999999988765
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.12 E-value=0.0026 Score=50.39 Aligned_cols=57 Identities=16% Similarity=0.344 Sum_probs=32.5
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
..|..+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|...++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455556666666666666666666665 34533 345555555555555555554443
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.06 E-value=0.0021 Score=51.41 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 764 (819)
..+.+...++++++++|+++.++..++++++..|+|++|...++++.+...
T Consensus 24 ~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 24 MTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 368899999999999999999999999999999999999999999987544
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.02 E-value=0.0038 Score=54.43 Aligned_cols=107 Identities=13% Similarity=0.049 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHH
Q 039792 542 ENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK----CGSLEDAY 617 (819)
Q Consensus 542 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 617 (819)
++++|++.|++..+.| .|+.. +-..+...+.++.|...++...+.| ++..+..|..+|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666555 22222 3333444445555555555555543 34444445555544 44444444
Q ss_pred HHHhcCC-CCChHhHHHHHHHHHh----CCChHHHHHHHHHHHH
Q 039792 618 ETFGSTT-WKDVACWNSMICTNAH----HGEPMKALLLFREMII 656 (819)
Q Consensus 618 ~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 656 (819)
+.|++.. ..+..++..|...|.. .++.++|++.|++..+
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 4444433 2333344444444444 3444444444444444
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.01 E-value=0.0025 Score=51.90 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=52.8
Q ss_pred CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+...|..+...|...|++++|+..|++.++ +.|+. ..|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566788888888888999999999999888 66764 5688888888899999999998888876
No 203
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.01 E-value=0.00055 Score=70.42 Aligned_cols=433 Identities=12% Similarity=0.086 Sum_probs=255.3
Q ss_pred CCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhh
Q 039792 191 RDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACS 270 (819)
Q Consensus 191 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 270 (819)
..+.+|+.|-.++.+.|++.+|..-|= ...|+..|..+|....+.|.+++-+..+...++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 356788899999999999988886553 456778889999999999999999998876665532 3444567888899
Q ss_pred ccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc------------------------CCCcc
Q 039792 271 MLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE------------------------VKNII 326 (819)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~ 326 (819)
+.+++.+-.+++. .|+..-...+.+-+...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 8888766544322 3455555566677777788888877777664 23667
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCC-CCChhHHhHHhhhh
Q 039792 327 SWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANI-ESDNFVKNSLVDMY 405 (819)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~ 405 (819)
+|--+-.+|+..+.+.-|.-.--.+. +.|| ....++..|...|.+++...+++... |+ .....+|+-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 89999999999998887765544443 2222 34456677888888888888877655 33 23566788888888
Q ss_pred hcCCCHHHHHHHHHhcCC----C-------CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 039792 406 AKCDSLTEARKVFDVMAD----R-------NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSV 474 (819)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 474 (819)
+|-. .++..+-++.... | ....|.-++-.|++..+++.|... |.+. +|+.+.-........+.
T Consensus 274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KV 347 (624)
T 3lvg_A 274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKV 347 (624)
T ss_dssp HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGC
T ss_pred HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHc
Confidence 8763 3443333332221 2 345688888888887777766532 1111 01111111111111222
Q ss_pred CchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHh-------------cCCCCeeehh-hhHHHHHhc
Q 039792 475 FSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDE-------------MNQRDIVVWN-AMLLGYTQQ 540 (819)
Q Consensus 475 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------------~~~~~~~~~~-~li~~~~~~ 540 (819)
.+.+---+..... +.-.+...+-|+..+...=+...+.++|.+ ....|...-| ++-..|...
T Consensus 348 aN~EiyYKAi~FY----L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE 423 (624)
T 3lvg_A 348 ANVELYYRAIQFY----LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 423 (624)
T ss_dssp SCSHHHHHHHHHH----TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHH----HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 2222111111111 111222233344443333333344444443 3222222211 122222222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 039792 541 LENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETF 620 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 620 (819)
. |-.++..-|..|-.-..+..|.++ .+.. -...-..-...|.+.++|+++.++.
T Consensus 424 E-------------------Dy~~LR~SId~ydNFD~i~LA~rL----EkHe---L~eFRrIAA~LYkkn~rw~qsi~l~ 477 (624)
T 3lvg_A 424 E-------------------DYQALRTSIDAYDNFDNISLAQRL----EKHE---LIEFRRIAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp T-------------------CCHHHHHTTSSCCCSCTTHHHHHH----HTCS---SHHHHHHHHHHHHTTCHHHHHSSCS
T ss_pred h-------------------hHHHHHHHHHHhccccHHHHHHHH----hhCc---hHHHHHHHHHHHHhcccHHHHHHHH
Confidence 2 333333344444444444444433 2211 2223333456788899999998776
Q ss_pred hcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHH
Q 039792 621 GSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 621 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
++=. .|.-.|...+.+|+.+-|.++++-.++.| +...|...+-.|...=+.|-+.++
T Consensus 478 KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 478 KKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp STTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred Hhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 5433 12223445567899999999999998855 567799999999988888887766
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.96 E-value=0.001 Score=58.63 Aligned_cols=34 Identities=9% Similarity=-0.117 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
+++|...++..++..+. +...+..+..++...|+
T Consensus 18 feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcc
Confidence 44444444444444433 44444444444444443
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00028 Score=58.77 Aligned_cols=86 Identities=9% Similarity=-0.007 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-------hh
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-------IT 665 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t 665 (819)
+...+..+...+.+.|++++|.+.|++.. +.+...|..+..+|...|++++|++.|++.++ +.|+. ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHH
Confidence 44556667777777888888888777655 44667788888888888999999999998887 67764 23
Q ss_pred HHHHHHHHHccCCHHHHH
Q 039792 666 FVGVLSACSHAGLIEDGL 683 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~ 683 (819)
+..+..++...|+.++|.
T Consensus 81 ~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHhHhhhH
Confidence 444444444444444433
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.89 E-value=0.0035 Score=66.52 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc---CCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 635 ICTNAHHGEPMKALLLFREMIIE---GLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
+..+.+.|++++|+.++++.++. -+.|+. .+++.|..+|...|++++|..++++.++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~---------------- 357 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME---------------- 357 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----------------
Confidence 44566778899999999988752 234443 4688899999999999999999887754
Q ss_pred hhcccchhhhHHHHHHHHH-ccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCC
Q 039792 708 LGRNVWNVELGRYAAEMAI-SIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARD 786 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~ 786 (819)
..++.+ .-.|+-+..|..|+.+|...|++++|..++++..+.- .+ +=.
T Consensus 358 -------------i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~-----------------~lG 406 (429)
T 3qwp_A 358 -------------PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM-RV-----------------THG 406 (429)
T ss_dssp -------------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH-----------------HTC
T ss_pred -------------hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HH-----------------hcC
Confidence 111111 1123345678899999999999999999999887521 11 113
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 039792 787 KSHHAADLTYSILDNLILHIK 807 (819)
Q Consensus 787 ~~~~~~~~i~~~l~~l~~~~~ 807 (819)
.+||...+++..|+....+|+
T Consensus 407 ~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 407 REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHh
Confidence 579999999999998888876
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.85 E-value=0.0019 Score=54.14 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=46.0
Q ss_pred CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+...|..+...|...|++++|+..|++.++ +.|+. ..|..+..++...|++++|...|++..+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556677777777777777777777777776 55654 4667777777777888888877777765
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.81 E-value=0.0075 Score=52.52 Aligned_cols=112 Identities=9% Similarity=-0.053 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHh----CCChHHHHHH
Q 039792 576 GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WKDVACWNSMICTNAH----HGEPMKALLL 650 (819)
Q Consensus 576 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~ 650 (819)
+++++|..+++...+.|.. +. . |..+|...+.+++|.+.|++.. ..+..++..|...|.. .++.++|++.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4678899999999998833 32 3 8888888889999999998876 5678888999988988 7899999999
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCc
Q 039792 651 FREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIE 695 (819)
Q Consensus 651 ~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~ 695 (819)
|++..+.| +...+..|...|.. .++.++|.+.|++..+.|..
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999854 45677778888887 88999999999998886643
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.76 E-value=0.036 Score=61.19 Aligned_cols=166 Identities=10% Similarity=0.025 Sum_probs=115.2
Q ss_pred ChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 039792 511 SNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLE----------NEEAIKLYLELLLSQQRPNEFTFAALITAASNLG- 576 (819)
Q Consensus 511 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g- 576 (819)
..++|.+.++.+.. | +...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34566777776654 2 33456655555555555 788888888887653 335667777777777778
Q ss_pred -ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCChHhHHHHHHHHHhC----------
Q 039792 577 -SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG-SLEDAYETFGSTT---WKDVACWNSMICTNAHH---------- 641 (819)
Q Consensus 577 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~---------- 641 (819)
+++++...++.+.+..+. +...|+.-...+.+.| ..+++.+.++++. ..|..+|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 568888888888887766 7777777777777778 7888888888777 34566777766665552
Q ss_pred ----CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHH
Q 039792 642 ----GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIE 680 (819)
Q Consensus 642 ----g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 680 (819)
+.++++++.+++.+. +.|+. ..|..+-..+.+.+..+
T Consensus 202 ~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCcc
Confidence 446788888888887 67754 56777777777666533
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.71 E-value=0.0031 Score=66.78 Aligned_cols=115 Identities=13% Similarity=-0.011 Sum_probs=81.8
Q ss_pred hCCChHHHHHHHHHHHH---cCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhccc
Q 039792 640 HHGEPMKALLLFREMII---EGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNV 712 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~ 712 (819)
..|++++|+.++++.++ .-+.|+. .+++.|..+|...|++++|..++++.++ ..-..||.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~-----------i~~~~lG~-- 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK-----------PYSKHYPV-- 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHHSCS--
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-----------HHHHHcCC--
Confidence 34678888888887765 2234543 4688999999999999999999988754 01111221
Q ss_pred chhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCCCh
Q 039792 713 WNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAA 792 (819)
Q Consensus 713 w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~ 792 (819)
-.|+-+..|+.|+.+|...|++++|..++++..+.-.+ .=..+||.+
T Consensus 377 ---------------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~ 423 (433)
T 3qww_A 377 ---------------YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYI 423 (433)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHH
Confidence 12334567899999999999999999999988752111 113579999
Q ss_pred HHHHHHHH
Q 039792 793 DLTYSILD 800 (819)
Q Consensus 793 ~~i~~~l~ 800 (819)
.++...|+
T Consensus 424 ~~l~~~l~ 431 (433)
T 3qww_A 424 SEIKQEIE 431 (433)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98887765
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.69 E-value=0.012 Score=63.37 Aligned_cols=120 Identities=9% Similarity=-0.059 Sum_probs=77.7
Q ss_pred HhccCChHHHHHHHHHHHHh-----CCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCC----hHhHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKL-----GLD-F-DSFITSALIDMYAKCGSLEDAYETFGSTT-------WKD----VACWNS 633 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~ 633 (819)
+...|++++|+.++++.++. |.. | ...+++.|...|...|++++|..++++.. .++ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655431 111 1 23456667777777777777777665533 222 236777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH---cCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 634 MICTNAHHGEPMKALLLFREMII---EGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
|...|...|++++|+.++++..+ .-+-||. .+...+-.++...|++++|..++..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887653 2234553 2355666678888999999999999876
No 212
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.67 E-value=0.0065 Score=47.94 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ +.|+. ..+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Confidence 34556667777777888888888777654 34566788888888888999999999999887 56754 45555555
Q ss_pred HHHcc
Q 039792 672 ACSHA 676 (819)
Q Consensus 672 a~~~~ 676 (819)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.64 E-value=0.0049 Score=50.09 Aligned_cols=48 Identities=19% Similarity=0.066 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 22 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444445667778899999999999999999999999999998765
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.23 E-value=0.046 Score=47.47 Aligned_cols=80 Identities=10% Similarity=-0.038 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC---CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHH
Q 039792 645 MKALLLFREMIIEGLEPNYITFVGVLSACSHAG---LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYA 721 (819)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~ 721 (819)
..+.+.|.+..+.|. ++..+...+..++.+++ ++++|+.+|+..
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l-------------------------------- 61 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL-------------------------------- 61 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--------------------------------
Confidence 344555555555442 55566666666777766 344555555544
Q ss_pred HHHHHccC-C-CCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 722 AEMAISID-P-MDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 722 ~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++.+ | ++...++.|+-.|++.|++++|.+.++.+.+
T Consensus 62 ----l~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 62 ----LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp ----HHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ----HhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4444 4 3355666666666777777777777666654
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.19 E-value=0.094 Score=53.13 Aligned_cols=134 Identities=11% Similarity=0.003 Sum_probs=82.7
Q ss_pred CCChHhHHHHHHHHH--hCC---ChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHc---cC-----CHHHHHHHHHHHH
Q 039792 625 WKDVACWNSMICTNA--HHG---EPMKALLLFREMIIEGLEPNY-ITFVGVLSACSH---AG-----LIEDGLDHFQSMA 690 (819)
Q Consensus 625 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~---~g-----~~~~a~~~~~~m~ 690 (819)
+.+...|...+.+.. ..+ +..+|..+|++.++ +.|+. ..|..+..+|.. .+ ......+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 345556665554433 222 35788889999988 78875 345544444421 11 1111112222222
Q ss_pred h-cCCccCchHHHHHHHHh-hcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 691 G-FGIEPGMEHYASVVSLL-GRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 691 ~-~g~~p~~~~y~~li~~l-~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
. .....+...|..+.-.+ .+ ++.+.|...++++++++| +...|..++.+|.-.|++++|.+.+++.....
T Consensus 269 a~~~~~~~a~~~~alal~~l~~--gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVK--GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hcccCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2 22233445555443222 22 289999999999999997 46788999999999999999999998876643
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.09 E-value=0.047 Score=55.35 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=53.8
Q ss_pred CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHH
Q 039792 625 WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYA 702 (819)
Q Consensus 625 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~ 702 (819)
..+...|..+...+...|++++|+..+++++.. .|+...|..+...+.-.|++++|.+.+++... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 556677777777777778888888888888884 47766676777778888888888888877765 335544443
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.84 E-value=0.15 Score=59.54 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=78.6
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 039792 504 DAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQ 583 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 583 (819)
......|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 44567788888888877664 456888889999999999999999888753 3344455555677776666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHH
Q 039792 584 FHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFRE 653 (819)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 653 (819)
+.+.....|. ++.-..+|.+.|++++|.+++ .+.+++++|..+-++
T Consensus 729 ~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 729 LAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 6655555442 233455577788888887654 445666677666554
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.74 E-value=0.013 Score=47.24 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=37.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCc-h-hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPNY-I-TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...+...|++++|++.|++.++ ..|+. . .+..+..++...|++++|.+.|++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666777777777777776 45643 4 566666677777777777777776665
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.64 E-value=0.15 Score=49.52 Aligned_cols=128 Identities=12% Similarity=0.010 Sum_probs=77.8
Q ss_pred hcCCHHHHHHHHhcCCCCCh--HhHHHHHHH-HHhC--CC------hHHHHHHHHHHHHcCCCCC---chhHHHHHHHHH
Q 039792 609 KCGSLEDAYETFGSTTWKDV--ACWNSMICT-NAHH--GE------PMKALLLFREMIIEGLEPN---YITFVGVLSACS 674 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 674 (819)
+.|+..+-.+.+.+..+.|+ ..|..++.+ +... |+ ..+|..++++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34444555555666654443 367666653 3332 32 5677788888888 7887 346777776665
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC-chhHHHHHHHHHhC-CCchHH
Q 039792 675 HAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD-SGSYTLLSNTFACN-SMWADA 752 (819)
Q Consensus 675 ~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~a 752 (819)
.. |.. +-| +.+.|++.+++++++.|+. ..+++.++..|+.. |++++|
T Consensus 211 ~v-------------------Pp~--------~gG----d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 211 AA-------------------PES--------FGG----GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HS-------------------CTT--------TTC----CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred hC-------------------CCc--------cCC----CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 53 100 001 5566666677777777753 77777777777764 777777
Q ss_pred HHHHHHHHhCCCcCCCc
Q 039792 753 KQVRKKMDLDGLMKEAG 769 (819)
Q Consensus 753 ~~~~~~m~~~g~~~~~g 769 (819)
.+.+++.........|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 77777777655554454
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.37 E-value=0.37 Score=56.14 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=44.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChH
Q 039792 566 AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPM 645 (819)
Q Consensus 566 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 645 (819)
..++..+.+.|..+.|.++.+ +. ..-.+....+|++++|.++.+.+ .+...|..|...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 455555556666666655442 11 01133445567777777766555 34456777777777777777
Q ss_pred HHHHHHHHHH
Q 039792 646 KALLLFREMI 655 (819)
Q Consensus 646 ~A~~~~~~m~ 655 (819)
.|.+.|.++.
T Consensus 699 ~A~~~y~~~~ 708 (814)
T 3mkq_A 699 LAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 7777776654
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.35 E-value=0.021 Score=45.94 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=44.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChH-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT---WKDVA-CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
....+.+.|++++|.+.|++.. +.+.. .|..+...|...|++++|++.|++.++ +.|+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE--LNPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcH
Confidence 3456667778888888777655 33556 778888888888888888989988888 667654
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.15 E-value=0.064 Score=56.79 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC---c-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIE---GLEPN---Y-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+++.|...|...|++++|+.++++.++- -+.|+ . .+++.|...|...|++++|..++++..+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5667777777777777777777776531 12233 2 4688888899999999999998888765
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.00 E-value=0.05 Score=57.52 Aligned_cols=62 Identities=8% Similarity=-0.086 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH---cCCCC---Cc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII---EGLEP---NY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p---~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+++.|...|...|++++|+.++++.++ .-+.| +. .+++.|...|...|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 566666677777777777777776653 11233 33 4688899999999999999999888764
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.82 E-value=0.27 Score=38.84 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=48.8
Q ss_pred CChHhHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 626 KDVACWNSMICTNAHHGE---PMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+|...|..+..++...++ .++|..++++.++ +.|+.+ ....+...+...|++++|+.+|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666666655544 6888888888888 788764 566777788889999999999988887
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.90 E-value=0.44 Score=39.70 Aligned_cols=48 Identities=8% Similarity=-0.064 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHccC-C-CCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISID-P-MDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...|..+++.++.-+ | ......+.|+-.|++.|+|++|.+..+.+.+
T Consensus 53 d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 53 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555555544 3 3446677788888888888888888887765
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.49 E-value=2.1 Score=38.03 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=72.9
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 039792 504 DAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQ 583 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 583 (819)
+....+|+++.|.++.+++ .+...|..|.......|+++-|.+.|++..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4445677777777777665 3456778888888888888888777776543 3334444445566666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHH
Q 039792 584 FHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 654 (819)
+-+.....|- ++.-...+.-.|+++++.++|.+...... -+-....+|-.+.|.++.+++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 5554444431 23333445556677777666655443211 111112345555566655544
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.16 E-value=2.9 Score=34.90 Aligned_cols=138 Identities=9% Similarity=0.028 Sum_probs=78.6
Q ss_pred HhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHH
Q 039792 608 AKCGSLEDAYETFGSTT-WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
.-.|.+++..++..+.. ..+..-+|=.|.-....-+.+-..+.++..=+ -+..+. .-...++.+|.+.|...
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk-iFDis~C~NlKrVi~C~~~~n~~s----- 91 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS-YFDLDKCQNLKSVVECGVINNTLN----- 91 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG-GSCGGGCSCTHHHHHHHHHTTCCC-----
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh-hcCcHhhhcHHHHHHHHHHhcchH-----
Confidence 34566677777666655 23333444444444444444444444444322 122111 12445555555554332
Q ss_pred HHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCc
Q 039792 686 FQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 686 ~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 765 (819)
++...-++.+-.++ ..+.-......++.-+|.+|...+.++++|.+.|+..+|.+++++.-++|++
T Consensus 92 -------------e~vd~ALd~lv~~~-KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 -------------EHVNKALDILVIQG-KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp -------------HHHHHHHHHHHHTT-CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred -------------HHHHHHHHHHHHhc-cHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 23333333333221 3344444555544556778999999999999999999999999999999986
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.62 E-value=0.65 Score=40.25 Aligned_cols=31 Identities=26% Similarity=0.168 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
+-.|.-+|.+.|++++|.+.++.+++ +.|+.
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34455566666777777777777776 66654
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.07 E-value=3.7 Score=34.33 Aligned_cols=85 Identities=16% Similarity=0.022 Sum_probs=58.9
Q ss_pred hcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 039792 508 KCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNH 587 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 587 (819)
.||++......+-.+.. +....+.-++.+...|.-++-.+++.++.. ..+|++.....+..+|.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34444444444444332 223344556777888888888888888644 3578888888888899999999999999888
Q ss_pred HHHhCCC
Q 039792 588 LIKLGLD 594 (819)
Q Consensus 588 ~~~~~~~ 594 (819)
+.+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8888865
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.65 E-value=5.9 Score=35.19 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=65.4
Q ss_pred hhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHH
Q 039792 405 YAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIH 484 (819)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 484 (819)
...+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44678888888887776 4566888888888888888888888888642 334444455556655555444
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcC
Q 039792 485 GLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMN 523 (819)
Q Consensus 485 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 523 (819)
+.....| -++.....+.-.|+++++.++|.+..
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4444333 13444445555666666666665543
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.21 E-value=4.4 Score=34.35 Aligned_cols=48 Identities=10% Similarity=-0.093 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHccCCC-CchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPM-DSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...|..+++.++.-+|. .....+.|+-.|++.|+|++|.+..+.+.+
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455556666666665553 345666667777777777777777766654
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.04 E-value=1 Score=36.24 Aligned_cols=60 Identities=7% Similarity=-0.068 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC-----CCC-CchhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEG-----LEP-NYITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
+-.|...+...|+++.|...|++..+.- ..+ ....+..|..++.+.|++++|..++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4456666777777777777777766521 011 12345566666666666666665554444
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.71 E-value=1.6 Score=49.01 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
+.+.|...++++....|.+-.+|..|+.+|...|+|+.|.-.+.-+
T Consensus 352 ~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 352 DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999998866
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.69 E-value=1.8 Score=34.79 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC----------CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchh
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT----------WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 665 (819)
.-+..|...+.+.|+++.|...|+... ......+..|..+|.+.|++++|+..+++..+ +.|+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 334445555555666666655554322 12345677788888888888888888888887 7887643
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.84 E-value=1.1 Score=50.37 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=42.7
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
-+...|+++-|+++.++... ..|+. .+|..|..+|.+.|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567888889998888888 78876 58888888999999999998888887
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.10 E-value=1.9 Score=41.81 Aligned_cols=64 Identities=14% Similarity=0.013 Sum_probs=42.9
Q ss_pred hHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCc
Q 039792 630 CWNSMICTNAH-----HGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSH-AGLIEDGLDHFQSMAGFGIE 695 (819)
Q Consensus 630 ~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~g~~ 695 (819)
.|..|...|.+ -|+.++|.+.|++.++ +.|+ ..++......++. .|+.+++.+++++.+.....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45556666666 3777777777777777 6774 3456666666666 47777777777777774444
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.77 E-value=3.3 Score=34.45 Aligned_cols=92 Identities=12% Similarity=-0.002 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHH---HHHHHHHHHhcCCcc---CchHHHHHHHHhhcccchhhh
Q 039792 644 PMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIED---GLDHFQSMAGFGIEP---GMEHYASVVSLLGRNVWNVEL 717 (819)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~g~~p---~~~~y~~li~~l~r~~w~~~~ 717 (819)
...+.+-|.+....|. |+..+-..+..++.++...++ |+.+++.....+ .| ....|..-+..|.- + +.+.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ykl-g-~Y~~ 92 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRL-K-EYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHT-T-CHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHh-h-hHHH
Confidence 3444555555555443 666677777777888776665 777777776532 12 11222222222221 1 7888
Q ss_pred HHHHHHHHHccCCCCchhHHHH
Q 039792 718 GRYAAEMAISIDPMDSGSYTLL 739 (819)
Q Consensus 718 a~~~~~~~~~~~p~~~~~~~~l 739 (819)
|.+..+.+++.+|+|..+..+.
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 8888888888888876655544
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.88 E-value=22 Score=35.01 Aligned_cols=169 Identities=9% Similarity=0.025 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKL----YLELLLSQQRPNEFTFAALITAA 572 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~ 572 (819)
..|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34567777888899999999887652 3456777887666654 45555678999999888888887
Q ss_pred hccCChH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhC---C
Q 039792 573 SNLGSLK-HGQQFHNHLIK----LG--LDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHH---G 642 (819)
Q Consensus 573 ~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 642 (819)
.....-+ .-..+.+.+++ .| ..-|+.....+...|.+.|++.+|+..|-.....|...+-.|+.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 6644222 23445555553 22 2247888999999999999999999877533322344444444333322 3
Q ss_pred ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 643 EPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...++-- ..-..++. |.-.|++..|..+|+...+
T Consensus 183 ~~~e~dl--------------f~~RaVL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLVFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHH--------------HHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 2222111 11222333 4557899999999887764
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.72 E-value=26 Score=34.54 Aligned_cols=167 Identities=11% Similarity=0.162 Sum_probs=95.8
Q ss_pred HHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHH----HHHHHHCCCCCCcchHHHHHHHhc
Q 039792 296 VINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKL----FTEMTRSGWKPDDFACSSVLTSCG 371 (819)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 371 (819)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+.+.+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445666688888888888876432 2335566776665554 455556688888887777776665
Q ss_pred CCcc-----hhhHHHHHHHHHHcCC--CCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc---CC
Q 039792 372 SVEA-----LEQGRQVHAYSFKANI--ESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKE---EK 441 (819)
Q Consensus 372 ~~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~ 441 (819)
.... .+-.........+.|- .-|+.....+...|.+.|++.+|+.-|-.-...|...+..++.-+.+. |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 4322 1222233333334432 236778888889999999999999877632222344444444433333 44
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHH
Q 039792 442 LSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLII 488 (819)
Q Consensus 442 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 488 (819)
..++--..- ..++ -+...+++..|..++....
T Consensus 184 ~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHH
Confidence 333222111 1222 2334566777776666554
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.66 E-value=5.1 Score=34.29 Aligned_cols=110 Identities=14% Similarity=0.036 Sum_probs=64.0
Q ss_pred CCChHhHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC
Q 039792 625 WKDVACWNSMICTNAHHGEP------MKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG 697 (819)
Q Consensus 625 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 697 (819)
+.|..+|-..+.-..+.|+. ++..++|++... .++|+. ..|...+..+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIr---------------------- 66 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVR---------------------- 66 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHH----------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHH----------------------
Confidence 55777777777777777777 777777777766 355542 122222221111
Q ss_pred chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCc
Q 039792 698 MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 698 ~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 765 (819)
|+.+. .+. |.+.++..++.++++...-+..|...+.--.+.|+...|.+++.+....+.+
T Consensus 67 ---YA~~~-ei~----D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 67 ---FAELK-AIQ----EPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp ---HHHHH-HHH----CGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ---HHHHH-Hhc----CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 11110 000 5666666666666665555566666777667777777777777776665543
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.35 E-value=1.9 Score=36.03 Aligned_cols=48 Identities=10% Similarity=-0.093 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHccCCC-CchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPM-DSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...|..+++.++.-+|. ....++.|+-.|++.|++++|.+..+.+.+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 555666666666666663 356777788888888888888888887764
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.33 E-value=41 Score=33.34 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=72.2
Q ss_pred HHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHH----HHHHHCCCCCCcchHHHHHHHhc
Q 039792 296 VINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLF----TEMTRSGWKPDDFACSSVLTSCG 371 (819)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 371 (819)
+|.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +.+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344556668888888888887643 223455667766555544 55556688888888777777765
Q ss_pred CCcchh-hHHHHHH----HHHHcC--CCCChhHHhHHhhhhhcCCCHHHHHHHHH
Q 039792 372 SVEALE-QGRQVHA----YSFKAN--IESDNFVKNSLVDMYAKCDSLTEARKVFD 419 (819)
Q Consensus 372 ~~~~~~-~a~~~~~----~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (819)
....-+ .-..+.+ .-.+.| ..-|+.....+...|.+.+++.+|+.-|-
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 544322 1122333 333444 23366777788888999999999988874
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.56 E-value=55 Score=34.26 Aligned_cols=224 Identities=11% Similarity=0.032 Sum_probs=111.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-----hHHHHHHHHhhccCchHhHHHHHHHHHHh---C-Cccc--hhh
Q 039792 430 NAMIEGYSKEEKLSEALDLFHEMRVGFVPPGL-----LTFVSLLGLSSSVFSLESSKQIHGLIIKY---G-VFLD--VFA 498 (819)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~---g-~~~~--~~~ 498 (819)
..|...|...|++.+|.+++.++...-...+. ..+...++.|...+++..+..+...+... . ..|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45677888889999999999888542111111 23444556666666666666666554321 1 1111 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 039792 499 GSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSL 578 (819)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 578 (819)
+...+..+...+++.+|.+.|.++ ...+...++.......+..+ +.+..-.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~-----------~~~~~~~~d~~~~~~~L~~~---------------v~~~iLa~~~ 274 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI-----------YQTDAIKSDEAKWKPVLSHI---------------VYFLVLSPYG 274 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHSCHHHHHHHHHHH---------------HHHHHHSSCS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH-----------HhcccccCCHHHHHHHHHHH---------------HHHHHhCCCC
Confidence 333444444444444444433321 22222333322222222211 1111111111
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHhcCCCCChH---------hHHHHHHHHHhCCChHHH
Q 039792 579 KHGQQFHNHLIKLGLDFDSFITSALIDMYAKC--GSLEDAYETFGSTTWKDVA---------CWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 579 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A 647 (819)
..-..+.....+..--++...+..++.+|... .+++.+.+.|.....++.. .|+.|......|+
T Consensus 275 ~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehn----- 349 (445)
T 4b4t_P 275 NLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHN----- 349 (445)
T ss_dssp STTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHH-----
T ss_pred chHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHH-----
Confidence 11122222222322234677888899998764 4678888888776644332 2444443332221
Q ss_pred HHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 039792 648 LLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAGFG 693 (819)
Q Consensus 648 ~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 693 (819)
+..+ .+| +.+++..+...+.- ..+++...+.+|+..|
T Consensus 350 ---l~~i----~k~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g 387 (445)
T 4b4t_P 350 ---LRVI----SEYYSRITLLRLNELLDL--TESQTETYISDLVNQG 387 (445)
T ss_dssp ---HHHH----HHHEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHT
T ss_pred ---HHHH----HHHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCC
Confidence 1111 123 45666666665542 5788888888888744
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.32 E-value=6.3 Score=40.74 Aligned_cols=67 Identities=13% Similarity=0.246 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCccCch
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAG-----FGIEPGME 699 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ 699 (819)
...++..+...|++++|+..++.+.. ..| +...+..++.++.+.|+..+|.+.|+...+ .|+.|+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34566777888999999988888887 667 556888999999999999999988888644 58888753
No 245
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.38 E-value=48 Score=31.64 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=22.5
Q ss_pred cCChhhHHHHHHHHHHhCCCCchh--HHHHHHHHhHhCCChHHHHHHHh
Q 039792 272 LQFVGGGKQIHAHVLRRGMGMDVS--VINVLMDFYSKCGRVKMARRLFD 318 (819)
Q Consensus 272 ~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 318 (819)
.+.......+.+.+++.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344444455666666666554321 11223334445555555555554
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.22 E-value=10 Score=29.78 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=43.5
Q ss_pred chhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 039792 240 SDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMD 302 (819)
Q Consensus 240 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 302 (819)
.-+..+-++.+....+.|++....+.|++|.+.+++..|.++++.+...- .....+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 34556666666777888888888888888888888888888888776542 122345555543
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.98 E-value=45 Score=40.10 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=104.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----C-----------------
Q 039792 568 LITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW----K----------------- 626 (819)
Q Consensus 568 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~----------------- 626 (819)
++..|...+..+.+.++.... +.++...-.+..+|..+|++++|.+.|.+... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444555556665555443221 22333334456667777777777777765430 0
Q ss_pred -----ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-----hHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc
Q 039792 627 -----DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-----TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP 696 (819)
Q Consensus 627 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p 696 (819)
-..-|.-++..+.++|.++.++++-+..++.. .++.. .|..+..++...|++++|...+-.+-....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 01125567777888888888888877776632 22221 367778888888888888888877755332
Q ss_pred CchHHHHHHHHhhccc---------c---hhhhHHHHHHHHHcc-CCCC-chhHHHHHHHHHhCCCchHHHHH-HHHH
Q 039792 697 GMEHYASVVSLLGRNV---------W---NVELGRYAAEMAISI-DPMD-SGSYTLLSNTFACNSMWADAKQV-RKKM 759 (819)
Q Consensus 697 ~~~~y~~li~~l~r~~---------w---~~~~a~~~~~~~~~~-~p~~-~~~~~~l~~~y~~~g~~~~a~~~-~~~m 759 (819)
.......+|..+.... + .-+.-..+..++-.. ++.+ +.+|..|-.-+...|++.+|..+ ++..
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 2344555555444320 0 111111222333222 3333 45677777777888888887765 4444
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.88 E-value=18 Score=28.23 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 576 GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 576 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
...++|..|-+.+...+- ...+--.-+..+...|++++|..+.+....||..+|-+|.. .+.|-..++..-+.++-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777766666543 22222222345678899999999999999999999987643 46677777777776776
Q ss_pred HcC
Q 039792 656 IEG 658 (819)
Q Consensus 656 ~~g 658 (819)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 654
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.83 E-value=19 Score=28.14 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 576 GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 576 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
...++|..|-+.+...+- ...+--.-+..+...|++++|..+.+....||...|-+|.. .+.|-..++..-+.++-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 355667666666666543 22222222345678899999999999999999999877654 35566666666666665
Q ss_pred HcC
Q 039792 656 IEG 658 (819)
Q Consensus 656 ~~g 658 (819)
.+|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 544
No 250
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=74.86 E-value=83 Score=32.59 Aligned_cols=112 Identities=13% Similarity=0.196 Sum_probs=51.6
Q ss_pred HHHHHHcCCChhhHHHHHhccCCCCc---chHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCC---cccHHHHHHHHhc
Q 039792 93 LLRNYSKANDLDGARKLFDTMSERNL---VSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPD---DYILSSVICACTQ 166 (819)
Q Consensus 93 ll~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~ 166 (819)
.+..-+..|+++-...+++.-..++. ..++. +...++.|+.+-+..+++. |..++ ....+ .|...+.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~t-~L~~A~~ 89 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP-LHMAARAGHTEVAKYLLQN-----KAKVNAKAKDDQT-PLHCAAR 89 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCH-HHHHHHHTCHHHHHHHHHH-----TCCSSCCCTTSCC-HHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCCC-HHHHHHH
Confidence 44445566777766666665433322 22222 3333455555444443332 22222 11222 2333333
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCCCcc--hhhHHHHHHHhcCChhHHHHHHhcC
Q 039792 167 LGGGGDGGNVGEQMHSFVIKSGFDRDVY--VGTSLMNLYAKNGSVDDAKFVFDGL 219 (819)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~ 219 (819)
.|+. .+...+++.|..++.. .....+...++.|+.+-+..+++.-
T Consensus 90 ~g~~--------~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 90 IGHT--------NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HTCH--------HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCH--------HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 3432 2334445566655432 1223344556667777777777653
No 251
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=73.35 E-value=43 Score=28.69 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 039792 541 LENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDS 597 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 597 (819)
++.++|.++|+.++..+-+- ...|.....--.+.|++..|.+++...+..+++|..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 45666666666665432222 444444444446678888888888888887776543
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=73.33 E-value=7.5 Score=40.14 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCchh
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII-----EGLEPNYIT 665 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 665 (819)
....+++.+...|+.++|...+.... +-+...|..++.+|...|+..+|++.|++..+ .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556777888888888887777655 44677888999999999999999998888753 599998765
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.84 E-value=66 Score=30.58 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=21.3
Q ss_pred CchHhHHHHHHHHHHhCCccchhh--HHHHHHHHHhcCChHHHHHHHH
Q 039792 475 FSLESSKQIHGLIIKYGVFLDVFA--GSALIDAYSKCFSNKDARLVFD 520 (819)
Q Consensus 475 ~~~~~a~~i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 520 (819)
+.......+.+.+.+.|..++... ..+.+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 333344555555666665544321 1223334444555555555554
No 254
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=72.12 E-value=1.2e+02 Score=33.55 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=24.6
Q ss_pred HHHHHhHhCCChHHHHHHHhcccC---CCcccHHHHHHHHHcC
Q 039792 299 VLMDFYSKCGRVKMARRLFDEIEV---KNIISWTTLIGGYMQN 338 (819)
Q Consensus 299 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 338 (819)
++|-.+.|||++++|.++.++... .-...+-..+..|+..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 456677899999999988877652 1124666667777643
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.05 E-value=17 Score=34.62 Aligned_cols=114 Identities=14% Similarity=0.050 Sum_probs=72.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh--cCCccCchHHHHHHHHhhccc
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG--FGIEPGMEHYASVVSLLGRNV 712 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~p~~~~y~~li~~l~r~~ 712 (819)
....+.|+.++|++....-++ -.|.. ..-..|+..+|-.|+|+.|..-++...+ ....|....|..+|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI------- 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV------- 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------
Confidence 345677888999988888887 56755 4556677788889999999988888876 22223333333332
Q ss_pred chhhhHHHHHHHHHcc-----CCCCchhHH-HHH--HHHHhCCCchHHHHHHHHHHhC
Q 039792 713 WNVELGRYAAEMAISI-----DPMDSGSYT-LLS--NTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 713 w~~~~a~~~~~~~~~~-----~p~~~~~~~-~l~--~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.++..-+..+.- -+..+..|. .|. +.....|+.++|.+++..+.+.
T Consensus 76 ----~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 76 ----KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 344444444442 223343343 333 3445579999999999999764
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=69.53 E-value=23 Score=27.82 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhh
Q 039792 644 PMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLG 709 (819)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~ 709 (819)
.-+..+-++.+....+.|+.....+.+.||.+..++.-|.++|+..+. .|.. ...|..+++-+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lqElk 90 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQELR 90 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHHHHh
Confidence 334555666776677889999999999999999999999999998887 5433 557887776553
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.98 E-value=95 Score=30.78 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY----LELLLSQQRPNEFTFAALITAAS 573 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 573 (819)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777788999999999887542 34567778776665554 55556789999998888888887
Q ss_pred ccCChH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 574 NLGSLK-HGQQFHNHLIK----LG--LDFDSFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 574 ~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
....-+ .=..+.+.+++ .| ..-|+.....+...|.+.|++.+|+.-|--
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il 161 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL 161 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence 766422 22334444443 33 344788888999999999999999988843
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.04 E-value=55 Score=27.70 Aligned_cols=77 Identities=4% Similarity=-0.070 Sum_probs=45.3
Q ss_pred CCCchhHHHHHHHHHccCCH---HHHHHHHHHHHhc-CCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchh
Q 039792 660 EPNYITFVGVLSACSHAGLI---EDGLDHFQSMAGF-GIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGS 735 (819)
Q Consensus 660 ~p~~~t~~~ll~a~~~~g~~---~~a~~~~~~m~~~-g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~ 735 (819)
.|+..+-..+..++.++... .+++.+++..... ........|-.-+.-|.-. +.+.|++..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~--~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh--hHHHHHHHHHHHHhcCCCcHHH
Confidence 45555666666677766654 4677777777662 2222222333222222221 8888888889999999987655
Q ss_pred HHH
Q 039792 736 YTL 738 (819)
Q Consensus 736 ~~~ 738 (819)
..+
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.84 E-value=1.5e+02 Score=32.54 Aligned_cols=124 Identities=12% Similarity=0.073 Sum_probs=73.8
Q ss_pred HHHHHHHHh-CCCCChhhhhHHHHHHHcCCChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC
Q 039792 73 QVHAQIAIS-GLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGR 151 (819)
Q Consensus 73 ~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 151 (819)
++-..+... |.+....+-+.-+..+++.+++.....++.. +..+...-.....+....|+..+|..............
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~ 135 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ 135 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Confidence 455555443 2223344556667788889999999997776 42333334446667788899888888888774444433
Q ss_pred CCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCC
Q 039792 152 PDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLM 220 (819)
Q Consensus 152 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 220 (819)
| ..+..++..+...|.+. +..++. -+......|+...|..+...++
T Consensus 136 p--~~c~~l~~~~~~~g~lt--------------------~~~~~~-R~~~al~~~~~~~a~~l~~~l~ 181 (618)
T 1qsa_A 136 P--NACDKLFSVWRASGKQD--------------------PLAYLE-RIRLAMKAGNTGLVTVLAGQMP 181 (618)
T ss_dssp C--THHHHHHHHHHHTTCSC--------------------HHHHHH-HHHHHHHTTCHHHHHHHHHTCC
T ss_pred c--HHHHHHHHHHHHCCCCC--------------------HHHHHH-HHHHHHHCCCHHHHHHHHHhCC
Confidence 4 34555666655555443 111222 2244455667777777776663
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.78 E-value=31 Score=26.95 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=54.7
Q ss_pred ChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 039792 274 FVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTR 353 (819)
Q Consensus 274 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (819)
..++|..+-+.+...|- ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44556666665555543 33333334455778999999999999999999999988765 466777777777777766
Q ss_pred CC
Q 039792 354 SG 355 (819)
Q Consensus 354 ~g 355 (819)
.|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=66.28 E-value=39 Score=29.46 Aligned_cols=115 Identities=10% Similarity=-0.013 Sum_probs=72.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCc-------hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCch-H
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIE-GLEPNY-------ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGME-H 700 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~-~ 700 (819)
+-.-+..+..+|.++.|+-+.+.+... +..|+. .++..+..++...|++.+|...|++.+. ...-|... .
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334467788899999999888876542 123442 2567788899999999999999999876 33323211 1
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 039792 701 YASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKK 758 (819)
Q Consensus 701 y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 758 (819)
+.++- .-+ .......+ +.+.+..+.++.-|.+.|++++|..+++.
T Consensus 103 ~~~~~-~~s-----------s~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 103 RPSTG-NSA-----------STPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp --------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccc-ccC-----------CCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 11110 000 00011222 34556778899999999999999999873
No 262
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=66.19 E-value=89 Score=30.07 Aligned_cols=17 Identities=0% Similarity=-0.017 Sum_probs=9.3
Q ss_pred HHHHHHHHCCCCCCcch
Q 039792 346 KLFTEMTRSGWKPDDFA 362 (819)
Q Consensus 346 ~~~~~m~~~g~~p~~~t 362 (819)
++.+.+.+.|..|+...
T Consensus 209 ~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 209 EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 34455555666665544
No 263
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.86 E-value=33 Score=34.54 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=45.6
Q ss_pred hHHhhhhhcCCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChhHHH
Q 039792 399 NSLVDMYAKCDSLTEARKVFDVMADRN---VVSYNAMIEGYSKEEK--LSEALDLFHEMRVGFVPPGLLTFV 465 (819)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~ 465 (819)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+....++..+...|+-+......
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 677888888899999999999998764 2334455555555433 355778888887777665544433
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=65.45 E-value=51 Score=27.53 Aligned_cols=74 Identities=3% Similarity=-0.108 Sum_probs=34.2
Q ss_pred CCchhHHHHHHHHHccCCH---HHHHHHHHHHHhcCC-ccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhH
Q 039792 661 PNYITFVGVLSACSHAGLI---EDGLDHFQSMAGFGI-EPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSY 736 (819)
Q Consensus 661 p~~~t~~~ll~a~~~~g~~---~~a~~~~~~m~~~g~-~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~ 736 (819)
|+..|-..+..++.++... .+|+.+++...+.+- ......|-.-+.-+.- + +.+.|++..+.+++.+|+|..+-
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl-g-dY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-G-EYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHhhCCCCHHHH
Confidence 4444444455555555433 345666666555221 1111122221211111 1 66666666777777777654443
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.76 E-value=1e+02 Score=36.98 Aligned_cols=165 Identities=10% Similarity=-0.041 Sum_probs=100.5
Q ss_pred hhhHHHHHHHcCCChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCC
Q 039792 89 LANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLG 168 (819)
Q Consensus 89 ~~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 168 (819)
....++..+.+.+..+.|+++....++. ..+--.+..+|...|++++|.+.|++. ..|+..+.....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~~-~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~---------- 880 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNSD-PIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFA---------- 880 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCS----------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccCC-cHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhh----------
Confidence 3445677778889999998877776653 333345566789999999999999865 334333322111
Q ss_pred CCCCCchhHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCChhHHHHHHhc----CCCCCe----eeHHHHHHHHHhcCC
Q 039792 169 GGGDGGNVGEQMHSFVIKSGFD-RDVYVGTSLMNLYAKNGSVDDAKFVFDG----LMVKTA----VSWTTIITGYVKSGR 239 (819)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~f~~----~~~~~~----~~~~~li~~~~~~g~ 239 (819)
............... .-..=|..++..+.+.|.++.+.++-.. ....+. ..|..+..++...|+
T Consensus 881 -------~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 881 -------VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp -------SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred -------hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 111111111101111 1112356677788888888777665432 222221 258889999999999
Q ss_pred chhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCh
Q 039792 240 SDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFV 275 (819)
Q Consensus 240 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 275 (819)
+++|...+-.+.....+ ...+..++..++..+.+
T Consensus 954 ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 954 FDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCCh
Confidence 99999999888765433 34566666666655544
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.64 E-value=51 Score=25.79 Aligned_cols=78 Identities=12% Similarity=0.137 Sum_probs=53.1
Q ss_pred ChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 039792 274 FVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTR 353 (819)
Q Consensus 274 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (819)
..++|..+-+.+...|- ...+--.-+..+...|++++|..+.+....||+..|-+|-.. +.|..+++..-+.++-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 44556666555555543 333333344556789999999999999999999999887654 45666777666666655
Q ss_pred CC
Q 039792 354 SG 355 (819)
Q Consensus 354 ~g 355 (819)
.|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.01 E-value=27 Score=29.12 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 039792 241 DLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMD 302 (819)
Q Consensus 241 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 302 (819)
-+..+-++.+...++.|++......|++|.+.+|+..|.++++-+...- .+...+|..++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455566666777889999999999999999999999999998776542 222445555543
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.15 E-value=95 Score=28.05 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=57.0
Q ss_pred HHHHHHHhcCC--CCChH---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHH
Q 039792 614 EDAYETFGSTT--WKDVA---CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 614 ~~A~~~~~~~~--~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
+.+.+.|.... ..|+. .|-..+..+ ..++..++..+|..|...|+--.. .-|......+...|++.+|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444454444 44543 454444443 244567888899999888887765 457777778888899999999998
Q ss_pred HHHhcCCccC
Q 039792 688 SMAGFGIEPG 697 (819)
Q Consensus 688 ~m~~~g~~p~ 697 (819)
.-++.+-+|-
T Consensus 140 ~GI~~~A~P~ 149 (202)
T 3esl_A 140 LGAENNCRPY 149 (202)
T ss_dssp HHHHTTCBSH
T ss_pred HHHHcCCccH
Confidence 8888777774
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.57 E-value=1.7e+02 Score=30.47 Aligned_cols=221 Identities=7% Similarity=-0.025 Sum_probs=119.5
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHH----hCCCCc--hhH
Q 039792 531 NAMLLGYTQQLENEEAIKLYLELLLS--QQRPN---EFTFAALITAASNLGSLKHGQQFHNHLIK----LGLDFD--SFI 599 (819)
Q Consensus 531 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 599 (819)
..|...|...|++.+|.+++.++... |..+. ...+..-++.|...+++..|..+...+.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34677788899999999999998743 22221 23456677888999999999999888642 222222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC-----CCChHhHHH----HHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHH
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT-----WKDVACWNS----MICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL 670 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 670 (819)
+...+..+...+++.+|...|.+.. ..|...|.. ++.+..-.+....--.+.........-++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 6777888888999999887776543 123322222 1222222222222222333333222223445677788
Q ss_pred HHHHcc--CCHHHHHHHHHHHHh-cCCc----cCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 671 SACSHA--GLIEDGLDHFQSMAG-FGIE----PGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 671 ~a~~~~--g~~~~a~~~~~~m~~-~g~~----p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
.+|... ..++...+.|..... ..+. ....++..+.+.+-.. | ...+.+ |-+.-.+..|+..+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~eh--n-------l~~i~k--~Ys~I~l~~la~lL 369 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEH--N-------LRVISE--YYSRITLLRLNELL 369 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHH--H-------HHHHHH--HEEEEEHHHHHHHH
T ss_pred HHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHH--H-------HHHHHH--HhceeeHHHHHHHh
Confidence 887654 346666666554443 2211 1123444443332211 1 111111 22233344444444
Q ss_pred HhCCCchHHHHHHHHHHhCCC
Q 039792 744 ACNSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~~g~ 764 (819)
-- .-+++......|...|.
T Consensus 370 ~l--~~~evE~~ls~mI~~g~ 388 (445)
T 4b4t_P 370 DL--TESQTETYISDLVNQGI 388 (445)
T ss_dssp TS--CHHHHHHHHHHHHHHTS
T ss_pred Cc--CHHHHHHHHHHHHHCCC
Confidence 22 35688888888876554
No 270
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=56.51 E-value=92 Score=27.16 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
..+---+..+|.+.|+.++|+.+++.++
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3344446667777777777777777766
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=56.12 E-value=49 Score=27.62 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhh
Q 039792 646 KALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLG 709 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~ 709 (819)
+..+-++.+....+.|+.......+.+|.+..++.-|.++|+-.+. .|. ....|..+++-+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lqElk 133 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQELR 133 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHHHHh
Confidence 3445556666667889999999999999999999999999988886 443 3667887776553
No 272
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.03 E-value=1.4e+02 Score=28.65 Aligned_cols=47 Identities=9% Similarity=-0.081 Sum_probs=22.4
Q ss_pred hHHHHHHHcCCChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhH
Q 039792 91 NMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEA 137 (819)
Q Consensus 91 ~~ll~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 137 (819)
.+.+...++.|+.+-+..+++.-..++...-.+.+...++.|+.+-+
T Consensus 32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 32 HSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV 78 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 34445555667777666666653332222112233334455554433
No 273
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=53.43 E-value=1.7e+02 Score=28.67 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCccchhh--HHHHHHHHHhcCChHHHHHHHHhcC-C---CCeeehhhhHHHHHhcCCHHHHHHHHHHHH
Q 039792 481 KQIHGLIIKYGVFLDVFA--GSALIDAYSKCFSNKDARLVFDEMN-Q---RDIVVWNAMLLGYTQQLENEEAIKLYLELL 554 (819)
Q Consensus 481 ~~i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 554 (819)
..+.+.+.+.|..++... ..+.+...+..|..+....+++.-. . +|..-++.|..+ ++.|+.+ +.+.+.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll 293 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLC 293 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHH
Confidence 345555666676554321 2234455566777777776665321 1 222233344333 4455543 334455
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 039792 555 LSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFD 596 (819)
Q Consensus 555 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 596 (819)
+.|..+|..+ .+...+..|+.+ +.+.+++.|-.||
T Consensus 294 ~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 294 KRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp TTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 6676666543 222333444443 4455566665555
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=53.36 E-value=2.6e+02 Score=30.61 Aligned_cols=251 Identities=6% Similarity=-0.058 Sum_probs=126.9
Q ss_pred hHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCc
Q 039792 295 SVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVE 374 (819)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 374 (819)
..-+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+-..| ......+..++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3445555666677777777776665 32333333345566677777777777776665544 233445566666665444
Q ss_pred chhh--HHHHHHHHHHcC-----------CCCCh-hHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcc---hHHHHHHHHH
Q 039792 375 ALEQ--GRQVHAYSFKAN-----------IESDN-FVKNSLVDMYAKCDSLTEARKVFDVMADRNVV---SYNAMIEGYS 437 (819)
Q Consensus 375 ~~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~ 437 (819)
.+.. ..+=+..+...| +.++. .....++..+.+ ...+........ ++.. .+..-+.-+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHH
Confidence 3322 222222222222 11111 111222222221 112222222211 1111 1111222333
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhHHH----HHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChH
Q 039792 438 KEEKLSEALDLFHEMRVGFVPPGLLTFV----SLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNK 513 (819)
Q Consensus 438 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 513 (819)
+ .+.+.|...|....... ..+..... .+.......+...++...+....... .+.....-.+....+.|+++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHH
Confidence 3 37789999998886533 22333222 22233344442444444444433322 23333444555556789999
Q ss_pred HHHHHHHhcCCCCe--ee-hhhhHHHHHhcCCHHHHHHHHHHHHH
Q 039792 514 DARLVFDEMNQRDI--VV-WNAMLLGYTQQLENEEAIKLYLELLL 555 (819)
Q Consensus 514 ~A~~~~~~~~~~~~--~~-~~~li~~~~~~g~~~~A~~~~~~m~~ 555 (819)
.|...|+.|..... .- .-=+..++...|+.++|..+|.++..
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999986321 11 12244567788999999999998864
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=51.13 E-value=21 Score=34.10 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+++.+....+..++-.|.|+..-..|..+++-.|+|+.|.+-++...+
T Consensus 12 ~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445555555555555666666666666666666666666555554443
No 276
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.25 E-value=34 Score=32.44 Aligned_cols=53 Identities=9% Similarity=-0.128 Sum_probs=27.2
Q ss_pred HHHhcCCchhHHHHHHHHHHCCCCCChhh-------HHHHHHHhh--ccCChhhHHHHHHHH
Q 039792 233 GYVKSGRSDLSLNLFNQMRETDVVHDKYL-------LSSVLSACS--MLQFVGGGKQIHAHV 285 (819)
Q Consensus 233 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 285 (819)
..++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+-++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34556777766666666665555554322 223333321 456665555555443
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.56 E-value=50 Score=34.40 Aligned_cols=90 Identities=10% Similarity=0.072 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC------CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH---cCCCCCchh-H-HHHH
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT------WKDVACWNSMICTNAHHGEPMKALLLFREMII---EGLEPNYIT-F-VGVL 670 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t-~-~~ll 670 (819)
.+.+.|.++|++++|.+.|.++. ..-+..|-..+..+...+++..+...+++... .+-.|+... + ..-.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 34444444444444444444333 11122344444555555555555555555432 111121111 1 1111
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 039792 671 SACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 671 ~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..+...+++.+|.+.|-+...
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHhc
Confidence 123445666666666555544
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=47.12 E-value=1.5e+02 Score=26.26 Aligned_cols=147 Identities=14% Similarity=0.064 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 039792 500 SALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLK 579 (819)
Q Consensus 500 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 579 (819)
...+..+.+.+..+....+.+.+..++...-...+.++...+.. ++...+.++.. .++...-...+.++...++.+
T Consensus 32 ~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~ 107 (201)
T 3ltj_A 32 RAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDER 107 (201)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH
Confidence 33334444444433333333333334333333333444444433 23333333332 245555555555555555443
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
....+...+ -.++..+-...+.++++.|..+....+.+.+..++...-...+.++...|. +++...+.++.
T Consensus 108 ~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 108 AVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp GHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 222222221 123444444555555555543322223333334444443444444444443 33444444444
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.36 E-value=76 Score=31.87 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHHHHhHhCCChHHHHHHHhcccCCCc---ccHHHHHHHHHcCCC--hhHHHHHHHHHHHCCCCCCcch
Q 039792 298 NVLMDFYSKCGRVKMARRLFDEIEVKNI---ISWTTLIGGYMQNSF--DREAMKLFTEMTRSGWKPDDFA 362 (819)
Q Consensus 298 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 362 (819)
+.++.=|...|+.++|.+.++++..|.. +...++..++-+.++ .+...+++..+...|+-+....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4566667777888888888888776632 234444445444332 3556777777777665544433
No 280
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=45.33 E-value=4.1e+02 Score=30.65 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=19.2
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCC
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLM 220 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~ 220 (819)
-|..++..+.+.++.+.+.++|+.+.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556667777888888888888753
No 281
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.78 E-value=4.2e+02 Score=30.59 Aligned_cols=253 Identities=9% Similarity=-0.041 Sum_probs=127.6
Q ss_pred hhcCCCHHHHHHHHHhcCCC----Cc--chHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC---hhH--HH--HHHH
Q 039792 405 YAKCDSLTEARKVFDVMADR----NV--VSYNAMIEGYSKEEKLSEALDLFHEMRVGFV--PPG---LLT--FV--SLLG 469 (819)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~t--~~--~ll~ 469 (819)
....|+.+++..+++..... +. ..-..+.-|....|..+++++++.......- .-+ ... -. .+--
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567778888888776531 11 1222334456666666678887777654211 001 111 11 1112
Q ss_pred HhhccCchHhHHHHHHHHHHhCCc-cchhhHHHHHHHHHhcCChHHHHHHHHhcCC-CCeee--hhhhHHHHHhcCCHHH
Q 039792 470 LSSSVFSLESSKQIHGLIIKYGVF-LDVFAGSALIDAYSKCFSNKDARLVFDEMNQ-RDIVV--WNAMLLGYTQQLENEE 545 (819)
Q Consensus 470 ~~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~g~~~~ 545 (819)
++...++. ++...+..+....-. ......-+|.-.|.-.|+.+....++..+.+ .+... .-++.-++...|+.+.
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22223333 333333333322111 0011111233334456776666666665432 11112 2223334556788888
Q ss_pred HHHHHHHHHHCCCCCCHH-HHH---HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 546 AIKLYLELLLSQQRPNEF-TFA---ALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 546 A~~~~~~m~~~g~~p~~~-t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
+..+.+.+... .+.. -|. .+.-+|+..|+......++..+.... ..+..-...+.-++.-.|+.+.+.++++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888887753 2332 232 23345677888877777888887642 2233333223333444666666777776
Q ss_pred cCC-CCChHhH--HHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCCchh
Q 039792 622 STT-WKDVACW--NSMICTNAHHGEP-MKALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 622 ~~~-~~~~~~~--~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t 665 (819)
.+. ..|...- -.+.-|....|+. .+++.++..+.. .+|..+
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 544 3343332 3344455555554 678888888874 556543
No 282
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.22 E-value=2.8e+02 Score=28.39 Aligned_cols=110 Identities=11% Similarity=0.078 Sum_probs=45.7
Q ss_pred HHhHhCCChHHHHHHHhcccCCC---cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch--HHHHHHHhcCCcch
Q 039792 302 DFYSKCGRVKMARRLFDEIEVKN---IISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFA--CSSVLTSCGSVEAL 376 (819)
Q Consensus 302 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~ 376 (819)
...++.|+.+....+++.-...+ ...++. +...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.
T Consensus 118 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 192 (437)
T 1n11_A 118 HIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVR----VAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192 (437)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 34455666666666665433221 111222 33334455543 4444455555554321 11122222333433
Q ss_pred hhHHHHHHHHHHcCCCCChhH--HhHHhhhhhcCCCHHHHHHHHHh
Q 039792 377 EQGRQVHAYSFKANIESDNFV--KNSLVDMYAKCDSLTEARKVFDV 420 (819)
Q Consensus 377 ~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 420 (819)
+ +.+.+.+.|..++... ..+.+...++.|+.+-+..+++.
T Consensus 193 ~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 193 D----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp H----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred H----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3 3333444444333211 11223334455666555555543
No 283
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=43.94 E-value=26 Score=18.68 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHh
Q 039792 792 ADLTYSILDNLILHIKG 808 (819)
Q Consensus 792 ~~~i~~~l~~l~~~~~~ 808 (819)
+.++|.+|+.|.+.+++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56889999988877654
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.92 E-value=1.9e+02 Score=26.30 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=7.5
Q ss_pred HHHhcCChhHHHHHHh
Q 039792 202 LYAKNGSVDDAKFVFD 217 (819)
Q Consensus 202 ~~~~~g~~~~A~~~f~ 217 (819)
..++.|+.+-+..+++
T Consensus 115 ~A~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 115 LAAQFGHTSIVAYLIA 130 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHh
Confidence 3344455554444444
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.74 E-value=1.7e+02 Score=30.33 Aligned_cols=62 Identities=6% Similarity=-0.003 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
++..+..-|.+.|++++|.+.|.++.+.-..+.. ..+..++..+...+++..+..++++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5667888999999999999999999986555554 3578888899999999999999999876
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.22 E-value=66 Score=31.56 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=42.3
Q ss_pred hHHhhhhhcCCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChh
Q 039792 399 NSLVDMYAKCDSLTEARKVFDVMADRN---VVSYNAMIEGYSKEEK--LSEALDLFHEMRVGFVPPGLL 462 (819)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 462 (819)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+....++..+.+.|+-+...
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 567778888899999999999987652 2334455555555433 355667888877666554443
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.03 E-value=1.8e+02 Score=26.54 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=8.3
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 039792 438 KEEKLSEALDLFHEMRVGF 456 (819)
Q Consensus 438 ~~g~~~~A~~~~~~m~~~g 456 (819)
+.|+.+-+..+++.+.+.|
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 3444444444444443333
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.35 E-value=2e+02 Score=30.39 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCCh----hhhhHHHHHHHcCCChhhHHHHHhccCCCCc-chHHH-------HHHHHHcCCChhhHHHH
Q 039792 73 QVHAQIAISGLQCDT----FLANMLLRNYSKANDLDGARKLFDTMSERNL-VSWSS-------LVSMYTKKGYGEEALMV 140 (819)
Q Consensus 73 ~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~f~~m~~~~~-~~~~~-------li~~~~~~g~~~~A~~~ 140 (819)
.++...+..-+..|. .+.|.|++.|...+.++.|.++..+..-|.. .+-+- +-..+.-.+++.+|.+.
T Consensus 213 ~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~ 292 (523)
T 4b4t_S 213 TMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEY 292 (523)
T ss_dssp HHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344455555555553 5789999999999999999999999876633 33222 23446678899999999
Q ss_pred HHHHHH
Q 039792 141 FIGFLK 146 (819)
Q Consensus 141 ~~~m~~ 146 (819)
|...++
T Consensus 293 L~~A~r 298 (523)
T 4b4t_S 293 IIAAIR 298 (523)
T ss_dssp HHHHTS
T ss_pred HHHHHH
Confidence 887733
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.15 E-value=1.3e+02 Score=26.70 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=26.0
Q ss_pred hHhCCChHHHHHHHhccc-C---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc
Q 039792 304 YSKCGRVKMARRLFDEIE-V---KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDD 360 (819)
Q Consensus 304 ~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 360 (819)
.+..|+.+....++..-. . .|..-++.|.. .++.|+ .++++.+.+.|..|+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~----~~~v~~Ll~~g~~~~~ 67 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNND----IEIAKALIDRGADINL 67 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTC----HHHHHHHHHTTCCTTC
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCC----HHHHHHHHHcCCCCCC
Confidence 345677777777766543 2 22222333333 334444 3455555566665543
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.87 E-value=1.9e+02 Score=25.86 Aligned_cols=92 Identities=11% Similarity=0.028 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHH
Q 039792 560 PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNA 639 (819)
Q Consensus 560 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 639 (819)
++...-...+.++.+.++.+....+.. +. -.++..+-...+.++.+.|..+....+.+-+..+|...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444555554444332222222 11 12344444445555555554332222223333444443344444444
Q ss_pred hCCChHHHHHHHHHHHH
Q 039792 640 HHGEPMKALLLFREMII 656 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~ 656 (819)
..|. .++...+.++.+
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 4443 334444444443
No 291
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.82 E-value=1.2e+02 Score=30.20 Aligned_cols=72 Identities=24% Similarity=0.307 Sum_probs=33.8
Q ss_pred HHHhCCCCCcc--hhhHHHHHHHhcCChhHHHHHHhcCCCCCe-eeHHHHHHHHHhcCCchhHHHHHHHHHHCCCC
Q 039792 184 VIKSGFDRDVY--VGTSLMNLYAKNGSVDDAKFVFDGLMVKTA-VSWTTIITGYVKSGRSDLSLNLFNQMRETDVV 256 (819)
Q Consensus 184 ~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 256 (819)
+++.|..++.. ...+.+...++.|+.+-+..+++.-...+. .-++ .+...+..|+.+-+..+++.-...|..
T Consensus 39 Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 39 LIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK-PIHLAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBC-HHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC-HHHHHHHcCCHHHHHHHHHhccccCCC
Confidence 34555554432 122334445556777666666654433222 1222 233334556666555555554333433
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.12 E-value=23 Score=34.88 Aligned_cols=160 Identities=8% Similarity=0.076 Sum_probs=76.6
Q ss_pred hhHHHHHHHcCCChhhHHHHHhccCCCCcc---hHHHHHHHHHcCCChh-hHHHHHHHHHHcCCCCCCcc---cHHHHHH
Q 039792 90 ANMLLRNYSKANDLDGARKLFDTMSERNLV---SWSSLVSMYTKKGYGE-EALMVFIGFLKVGNGRPDDY---ILSSVIC 162 (819)
Q Consensus 90 ~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~p~~~---~~~~ll~ 162 (819)
...++.-|...|+.++|...++++..|.-. .-..+-.++=+...-. .+-.++..+ .. ++-+... .|..++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L-~~-~~ls~~~i~~gf~~ll~ 83 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDL-CG-TVMSTTDVEKSFDKLLK 83 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHH-HH-HTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999876522 2222223333333222 344455555 32 2222222 2333443
Q ss_pred HHhcCC-CCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC--hhHHHHHHhc------C----CCCC----e-
Q 039792 163 ACTQLG-GGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGS--VDDAKFVFDG------L----MVKT----A- 224 (819)
Q Consensus 163 ~~~~~~-~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~--~~~A~~~f~~------~----~~~~----~- 224 (819)
.+.... +...|.+..-.+....+..|+-|-.+.....-..-...|. +..|..++.. + ..++ .
T Consensus 84 ~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 84 DLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHH
T ss_pred hhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHH
Confidence 333221 3444444444445544444443333322211100000000 2222222210 0 0000 0
Q ss_pred ---eeHHHHHHHHHhcCCchhHHHHHHHHH
Q 039792 225 ---VSWTTIITGYVKSGRSDLSLNLFNQMR 251 (819)
Q Consensus 225 ---~~~~~li~~~~~~g~~~~A~~~~~~m~ 251 (819)
...+.++.-|...|+.++|...++++.
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 124567777777788888888887774
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.90 E-value=51 Score=27.40 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=42.9
Q ss_pred hhHHHHHHHcCCChhhHHHHHhccCCCCc---chHHHHHHHHHcCCC--hhhHHHHHHHHHHcCCC
Q 039792 90 ANMLLRNYSKANDLDGARKLFDTMSERNL---VSWSSLVSMYTKKGY--GEEALMVFIGFLKVGNG 150 (819)
Q Consensus 90 ~~~ll~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 150 (819)
.+.++.-|...|+.++|.+.++++..|.- +...++..++=+.++ .+.+..++..+ ...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L-~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL-WKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHCCC
Confidence 46789999999999999999999987632 345556666666542 35677788777 44443
No 294
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.40 E-value=1e+02 Score=27.27 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=10.4
Q ss_pred HHhcCChhHHHHHHhcC
Q 039792 203 YAKNGSVDDAKFVFDGL 219 (819)
Q Consensus 203 ~~~~g~~~~A~~~f~~~ 219 (819)
.++.|+.+....+++.-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34566677777666543
No 295
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.40 E-value=2.1e+02 Score=25.97 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=19.2
Q ss_pred HHHHHhCCCCCcc--hhhHHHHHHHhcCChhHHHHHHhc
Q 039792 182 SFVIKSGFDRDVY--VGTSLMNLYAKNGSVDDAKFVFDG 218 (819)
Q Consensus 182 ~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~ 218 (819)
..+++.|..++.. .....+...++.|+.+-+..+++.
T Consensus 28 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 28 HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 3344556554432 122344445566777776666654
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.24 E-value=1.8e+02 Score=24.85 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC
Q 039792 645 MKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG 697 (819)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 697 (819)
.++.++|..|...|+--.. .-|......+...|++++|.++|+.-++.+-+|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3478899999988887765 4577777788889999999999998888777774
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.02 E-value=2.3e+02 Score=25.84 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=17.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCc
Q 039792 332 IGGYMQNSFDREAMKLFTEMTRSGWKPDD 360 (819)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 360 (819)
+...++.|+.+-...+++.+.+.|..++.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 41 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDI 41 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 34455667777666666666666655543
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.82 E-value=62 Score=26.88 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---chhHHHHHHHHHccCC--HHHHHHHHHHHHhcCCcc
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEPN---YITFVGVLSACSHAGL--IEDGLDHFQSMAGFGIEP 696 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~g~~p 696 (819)
.+.++.-|..+|+.++|.+.++++. .|. .+....+..++-+.+. .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~----~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC----CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3556677777777777777777763 232 2334445555555432 345666666666544433
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.93 E-value=1.1e+02 Score=28.79 Aligned_cols=87 Identities=5% Similarity=-0.092 Sum_probs=40.4
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCcch-------HHHHHHHhc--CCcchhhHHHHHHHHHHcC---------CCCChh
Q 039792 335 YMQNSFDREAMKLFTEMTRSGWKPDDFA-------CSSVLTSCG--SVEALEQGRQVHAYSFKAN---------IESDNF 396 (819)
Q Consensus 335 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~~ 396 (819)
.++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+.++.+++.-...+ +.....
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 4455666666666666655555544322 233333331 4566665555555433211 110000
Q ss_pred HHhHHhhhhhcCCCHHHHHHHHHhc
Q 039792 397 VKNSLVDMYAKCDSLTEARKVFDVM 421 (819)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m 421 (819)
...+.+...+..|+.+-+..+++.-
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 1122333444556666666666543
No 300
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.52 E-value=2.5e+02 Score=25.04 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=37.4
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039792 494 LDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAAS 573 (819)
Q Consensus 494 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 573 (819)
++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.+.. ++...+.++.. .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444455555555555544444444444444444444444455554442 23344444432 345545455555555
Q ss_pred ccCC
Q 039792 574 NLGS 577 (819)
Q Consensus 574 ~~g~ 577 (819)
..+.
T Consensus 169 ~~~~ 172 (211)
T 3ltm_A 169 EIGG 172 (211)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 5544
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.40 E-value=5e+02 Score=28.52 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChhHHHHHHhcCC---CCCeeeHHHHHHHHHhc
Q 039792 198 SLMNLYAKNGSVDDAKFVFDGLM---VKTAVSWTTIITGYVKS 237 (819)
Q Consensus 198 ~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~ 237 (819)
++|--+.|+|.+++|.++.++.. ++-...+-..+..|+..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 46667789999999999888763 22224677777777743
No 302
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=33.86 E-value=1.7e+02 Score=26.47 Aligned_cols=51 Identities=6% Similarity=0.034 Sum_probs=34.1
Q ss_pred cCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 039792 575 LGSLKHGQQFHNHLIKLGLDF-DSFITSALIDMYAKCGSLEDAYETFGSTTW 625 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 625 (819)
.++......+|..|...|+.. -...|......+...|++.+|.++|+....
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334567777788777766643 345566777777777777777777766553
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.70 E-value=2.4e+02 Score=24.52 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=54.8
Q ss_pred HHHHHHHhcCC--CCChH---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHH
Q 039792 614 EDAYETFGSTT--WKDVA---CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 614 ~~A~~~~~~~~--~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
+.+.+.|.... ..|+. .|-..+..+ +++.++|..|...|+--.. .-|......+...|++.+|.++|+
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44445554444 44544 344333332 3477889999998887765 457777778888999999999999
Q ss_pred HHHhcCCccCc
Q 039792 688 SMAGFGIEPGM 698 (819)
Q Consensus 688 ~m~~~g~~p~~ 698 (819)
.-++.+-+|-.
T Consensus 121 ~Gi~~~A~P~~ 131 (164)
T 2wvi_A 121 EGIQQKAEPLE 131 (164)
T ss_dssp HHHHTTCBSHH
T ss_pred HHHHcCCCcHH
Confidence 99888888853
No 304
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.32 E-value=1.7e+02 Score=26.63 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=8.6
Q ss_pred HHHHHhcCChhHHHHHHhc
Q 039792 200 MNLYAKNGSVDDAKFVFDG 218 (819)
Q Consensus 200 l~~~~~~g~~~~A~~~f~~ 218 (819)
+...++.|+.+-+..+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344444555444444443
No 305
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=32.92 E-value=4.1e+02 Score=27.00 Aligned_cols=247 Identities=9% Similarity=-0.045 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCC--------CCeeehhhhHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 039792 496 VFAGSALIDAYSKCFSNKDARLVFDEMNQ--------RDIVVWNAMLLGYTQ-QLENEEAIKLYLELLLSQQRPNEFTFA 566 (819)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~ 566 (819)
......|...|.+.|+.++..+++..... +.......||..+.. .+..+.-.++..+..+..-.-+..-+.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHhccCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChHhH
Q 039792 567 -----ALITAASNLGSLKHGQQFHNHLIKLGLDFD-----SFITSALIDMYAKCGSLEDAYETFGSTT-----WKDVACW 631 (819)
Q Consensus 567 -----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~ 631 (819)
-+...+...|++.+|..++..+.+.--..| ..++-.-+.+|...|++.++...+.+.. -+....-
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Q ss_pred HHHHHHHH------hCCChHHHHHHHHHHHHcCCCCCchhHHH-----HHHHHHccCCHHHHHHHHHHHHh-cCCccCch
Q 039792 632 NSMICTNA------HHGEPMKALLLFREMIIEGLEPNYITFVG-----VLSACSHAGLIEDGLDHFQSMAG-FGIEPGME 699 (819)
Q Consensus 632 ~~li~~~~------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-----ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~ 699 (819)
..-+..|. ..+++..|...|-+..+.=-......... ++.+.......+-..-+-..... + ..|...
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~pei~ 257 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CSHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CCccHH
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 700 HYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 700 ~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
.+..++.++... ++..-....+.--..-..|+....++..+|..
T Consensus 258 ~l~~L~~a~~~~--dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~ 301 (394)
T 3txn_A 258 AMKSVAEASHKR--SLADFQAALKEYKKELAEDVIVQAHLGTLYDT 301 (394)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
No 306
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.64 E-value=2e+02 Score=26.07 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=9.3
Q ss_pred HHHhcCChhHHHHHHhc
Q 039792 202 LYAKNGSVDDAKFVFDG 218 (819)
Q Consensus 202 ~~~~~g~~~~A~~~f~~ 218 (819)
..++.|+.+....+++.
T Consensus 9 ~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 9 LAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 34455666666655553
No 307
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.49 E-value=2.6e+02 Score=24.65 Aligned_cols=105 Identities=10% Similarity=0.095 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS 577 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 577 (819)
+-...+.++.+.++.+....+...+..++...-...+.++.+.+.. ++...+.++.. .++...-...+.++...|.
T Consensus 92 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 92 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 3333444444444433333333333334433333334444444432 33344444432 2455555555555555554
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 610 (819)
. .+...+..+.+. ++..+-...+.++.+.
T Consensus 168 ~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 E-RVRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp H-HHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred h-hHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 3 333344444333 2444444444444443
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.96 E-value=51 Score=28.37 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=42.0
Q ss_pred hhHHHHHHHcCCChhhHHHHHhccCCCC---cchHHHHHHHHHcCCC--hhhHHHHHHHHHHcCC
Q 039792 90 ANMLLRNYSKANDLDGARKLFDTMSERN---LVSWSSLVSMYTKKGY--GEEALMVFIGFLKVGN 149 (819)
Q Consensus 90 ~~~ll~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 149 (819)
.+.+|.-|...|+.++|.+.++++..|. .+...++..++=+.++ .+.+..++..+ ...+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L-~~~~ 75 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL-WKSS 75 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHCC
Confidence 4678999999999999999999998763 2345556666665433 34567777777 4444
No 309
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=31.34 E-value=41 Score=25.59 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCcCCC
Q 039792 792 ADLTYSILDNLILHIKGVGYVPNT 815 (819)
Q Consensus 792 ~~~i~~~l~~l~~~~~~~~~~~~~ 815 (819)
..+|.+.+++-..+++..||.||.
T Consensus 15 lirIl~~ieekinELk~dG~ePDI 38 (103)
T 2pk8_A 15 LIRILGEIEEKMNELKMDGFNPDI 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCe
Confidence 456777777777888889999995
No 310
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=30.64 E-value=1.9e+02 Score=27.21 Aligned_cols=16 Identities=6% Similarity=0.090 Sum_probs=8.4
Q ss_pred hHhCCChHHHHHHHhc
Q 039792 304 YSKCGRVKMARRLFDE 319 (819)
Q Consensus 304 ~~~~g~~~~A~~~~~~ 319 (819)
.+..|+.+-+..+++.
T Consensus 108 A~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 108 AIERRNMTLVTLLVEN 123 (273)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHC
Confidence 3445555555555554
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.76 E-value=63 Score=27.82 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---chhHHHHHHHHHccCC--HHHHHHHHHHHHhcCCcc
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEPN---YITFVGVLSACSHAGL--IEDGLDHFQSMAGFGIEP 696 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~g~~p 696 (819)
.+.++.-|..+|+.++|.+.++++. .|. .+....+..++-+.+. .+....++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~----~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC----CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567777777788888887777763 232 2344455556665432 345666777776544433
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.62 E-value=2.7e+02 Score=27.53 Aligned_cols=174 Identities=11% Similarity=-0.039 Sum_probs=78.9
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--------------------H
Q 039792 504 DAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE--------------------F 563 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------------~ 563 (819)
...+..|+.+-+..+++.-...+...-.+.+...+..|+.+-+..+++.-...|..|+. .
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCK 137 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEES
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCC
Confidence 33344555555555555444332211222333444556665555555544333433332 0
Q ss_pred HHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhcCCC--------CChHhH
Q 039792 564 TFAALITAASNLG--SLKHGQQFHNHLIKLGLDFDSFI--TSALIDMYAKCGSLEDAYETFGSTTW--------KDVACW 631 (819)
Q Consensus 564 t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~ 631 (819)
-.+.|. ..+..| +.+ +.+.+++.|..++... ....+...+..|+.+-+..+++.... .|..-+
T Consensus 138 g~t~L~-~A~~~g~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~ 212 (364)
T 3ljn_A 138 GQTALH-WCVGLGPEYLE----MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN 212 (364)
T ss_dssp CCCHHH-HHHHSCGGGHH----HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred CCCHHH-HHHHcCCchHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence 112222 233344 443 3344444455443221 12234445567787777777765332 222333
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchh---HHHHHHHHHccCCHHHHHHHHHH
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEPNYIT---FVGVLSACSHAGLIEDGLDHFQS 688 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~ 688 (819)
+.|.. .+..|+.+ +.+.+++.|..++... ...|.. .+..|..+-+..+++.
T Consensus 213 t~L~~-A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~-A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 213 SHLHW-AILINWED----VAMRFVEMGIDVNMEDNEHTVPLYL-SVRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTHH-HHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHH-HHHTCCHHHHHHHHHH
T ss_pred cHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHH-HHHhChHHHHHHHHHc
Confidence 33332 23555543 4455556677765422 223333 3345666655555544
No 313
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.31 E-value=1.9e+02 Score=23.26 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=21.9
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 718 GRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 718 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
|...+++.+.+..+-+. ..-..|++|.++..+|++
T Consensus 48 GI~eLe~Gl~I~~~~~~---------~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 48 GIGHLLRGISISSKESE---------HTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHSSCCCCTT---------CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCC---------CCChhHHHHHHHHHHHHH
Confidence 44456666676553221 223468889888888875
No 314
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.70 E-value=1.8e+02 Score=26.42 Aligned_cols=47 Identities=9% Similarity=-0.095 Sum_probs=23.6
Q ss_pred HHHHHHHHCCCCCCcch--HHHHHHHhcCCcchhhHHHHHHHHHHcCCC
Q 039792 346 KLFTEMTRSGWKPDDFA--CSSVLTSCGSVEALEQGRQVHAYSFKANIE 392 (819)
Q Consensus 346 ~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 392 (819)
++++.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..
T Consensus 135 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 135 EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 34444455565554322 123344444556666666666666666543
No 315
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.45 E-value=3.2e+02 Score=23.92 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=26.7
Q ss_pred HhcCChhHHHHHHhcCCCC-C-eeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCCh
Q 039792 204 AKNGSVDDAKFVFDGLMVK-T-AVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDK 259 (819)
Q Consensus 204 ~~~g~~~~A~~~f~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 259 (819)
++.|+++....+++.-... + ..-++ .+...+..|+.+.-.++.+.+.+.|..++.
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T-~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSN-ILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTT-HHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCC-HHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 4556666666555532211 1 11122 233344555555555566666666665554
No 316
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.40 E-value=2.7e+02 Score=26.14 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=7.7
Q ss_pred hcCCCHHHHHHHHHh
Q 039792 406 AKCDSLTEARKVFDV 420 (819)
Q Consensus 406 ~~~g~~~~A~~~~~~ 420 (819)
+..|+.+-+..+++.
T Consensus 109 ~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 109 IERRNMTLVTLLVEN 123 (273)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 344555555555544
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.12 E-value=1.9e+02 Score=26.99 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=18.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 594 DFDSFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 594 ~~~~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
.+++......+..+.+.|+-++|.++|=
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 3345555666677777777777777663
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.43 E-value=1.5e+02 Score=26.94 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=12.2
Q ss_pred HHHHHHhcCChhHHHHHHhc
Q 039792 199 LMNLYAKNGSVDDAKFVFDG 218 (819)
Q Consensus 199 ll~~~~~~g~~~~A~~~f~~ 218 (819)
.+...++.|+++....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 34455566777777666654
No 319
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.16 E-value=1.8e+02 Score=27.03 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=14.9
Q ss_pred HHHHHhcCCchhHHHHHHHHH
Q 039792 231 ITGYVKSGRSDLSLNLFNQMR 251 (819)
Q Consensus 231 i~~~~~~g~~~~A~~~~~~m~ 251 (819)
++.+....++++|++++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 566777777777777777654
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.10 E-value=3.3e+02 Score=25.02 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC
Q 039792 645 MKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG 697 (819)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 697 (819)
+++..+|..|...||--.. .-|......+...|++.+|.++|+.-++.+-+|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5677899999999888765 4577778888899999999999999988777774
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.86 E-value=1.3e+02 Score=29.96 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=36.1
Q ss_pred hhHHHHHHHcCCChhhHHHHHhccCCCCc---chHHHHHHHHHcCC-ChhhHHHHHHHH
Q 039792 90 ANMLLRNYSKANDLDGARKLFDTMSERNL---VSWSSLVSMYTKKG-YGEEALMVFIGF 144 (819)
Q Consensus 90 ~~~ll~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m 144 (819)
...++.-|...|++++|.+.++++..|.- +....+..++=+.. .-+.+..++..+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L 72 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQL 72 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987742 23333333333322 123455666666
No 322
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.59 E-value=2.2e+02 Score=26.41 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=14.7
Q ss_pred HHHhcCCchhHHHHHHHHHHCCCCCC
Q 039792 233 GYVKSGRSDLSLNLFNQMRETDVVHD 258 (819)
Q Consensus 233 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 258 (819)
..++.|+.+....+++.+.+.|..++
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 34556666666666665555555443
No 323
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.58 E-value=4.9e+02 Score=25.21 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCCchh--HHHHHHHHhHhCCChHHHHHHHhccc----CCCcccHHHHHHHHHcCCChhHHHHHHHHHH
Q 039792 279 KQIHAHVLRRGMGMDVS--VINVLMDFYSKCGRVKMARRLFDEIE----VKNIISWTTLIGGYMQNSFDREAMKLFTEMT 352 (819)
Q Consensus 279 ~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 352 (819)
..+.+.+++.|..++.. ...+-+...+..|..+.+..+++.-. .+|..-++.|..+ ++.|+. ++.+.+.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~Ll 293 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK----KIAELLC 293 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCH----HHHHHHH
Confidence 44555666777665432 12233445567788887777776422 2233333444433 455654 3555667
Q ss_pred HCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCCh
Q 039792 353 RSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDN 395 (819)
Q Consensus 353 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 395 (819)
+.|..||..+ . +...++.|+. ++.+.+++.|-.+|.
T Consensus 294 ~~GAd~n~~~--~-L~~A~~~~~~----~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 294 KRGASTDCGD--L-VMTARRNYDH----SLVKVLLSHGAKEDF 329 (337)
T ss_dssp TTSCSSTTCC--H-HHHHHHTTCH----HHHHHHHHTTCCC--
T ss_pred HCCCCCCCCC--H-HHHHHHcCCH----HHHHHHHHCcCCCCC
Confidence 7788887665 2 2333344443 345556667766553
No 324
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.31 E-value=2.1e+02 Score=20.95 Aligned_cols=62 Identities=8% Similarity=0.127 Sum_probs=43.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 039792 551 LELLLSQQRPNEFTFAALITAASNLG-SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSL 613 (819)
Q Consensus 551 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 613 (819)
+.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.++..+..+....++.+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34567788877655 34556666554 5667888888888877777777777777777777643
No 325
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.24 E-value=2.9e+02 Score=23.63 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 581 GQQFHNHLIKLGLDF-DSFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 581 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
...+|..|...|+.. -...|......+...|++.+|.++|+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433322 12233333334444444444444333
No 326
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.96 E-value=47 Score=29.11 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=10.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q 039792 633 SMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~m 654 (819)
.+|.-|..+|+.++|...++++
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555443
No 327
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.87 E-value=1.7e+02 Score=22.88 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=27.7
Q ss_pred EEEECCEEEEEEeCCCCCCChHHHHHHHHHH
Q 039792 772 WIEVNNEVHAFVARDKSHHAADLTYSILDNL 802 (819)
Q Consensus 772 ~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l 802 (819)
-|.++|..|.|...|...+..+++.+++...
T Consensus 18 kV~f~ge~~rF~Vs~~~~~tweel~~mvk~~ 48 (101)
T 1wj6_A 18 NVTFKNEIQSFLVSDPENTTWADIEAMVKVS 48 (101)
T ss_dssp EEEETTEEEEEEESCTTTSCHHHHHHHHHHH
T ss_pred EEEEcCCeeEEEecCCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999999988754
No 328
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.11 E-value=4.3e+02 Score=23.72 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=42.1
Q ss_pred hhHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhCC
Q 039792 532 AMLLGYT---QQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS-----LKHGQQFHNHLIKLGL 593 (819)
Q Consensus 532 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~ 593 (819)
-+|+++. +..+++.|+-.+-+|++.| .|..+.-..++.+....|. +..|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3555554 4588999999999999999 7877777777777776664 2334444455555554
No 329
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.78 E-value=2.1e+02 Score=27.28 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCChhHHHH
Q 039792 197 TSLMNLYAKNGSVDDAKF 214 (819)
Q Consensus 197 ~~ll~~~~~~g~~~~A~~ 214 (819)
...+...+..|+.++..+
T Consensus 16 ~~~lH~Aa~~g~~~~~~~ 33 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDG 33 (285)
T ss_dssp ------------------
T ss_pred HHHHHHHhhcCCCCCccc
Confidence 334444555555555544
No 330
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.72 E-value=2.2e+02 Score=22.14 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHH-----hcCCccCchHHHHH
Q 039792 647 ALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMA-----GFGIEPGMEHYASV 704 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~y~~l 704 (819)
|.++.++...-|+.|+..+..-++..|..-+. + +.++.++.. ..|..|+.+..+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 56677888888999998888888887776664 1 333333322 26888887655544
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.85 E-value=1e+02 Score=23.94 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=33.6
Q ss_pred CChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHH
Q 039792 101 NDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMV 140 (819)
Q Consensus 101 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 140 (819)
...+.|+++++.++.+...+|...+.++...|...-|..+
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 5789999999999999999999999999877776655443
No 332
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.59 E-value=1.2e+02 Score=28.32 Aligned_cols=54 Identities=7% Similarity=-0.200 Sum_probs=32.8
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhCCCCch-------hHHHHHHHHhHhC---CChHHHHHHHhc
Q 039792 265 VLSACSMLQFVGGGKQIHAHVLRRGMGMDV-------SVINVLMDFYSKC---GRVKMARRLFDE 319 (819)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~---g~~~~A~~~~~~ 319 (819)
.|...+..|+.+..+.+++.+++.|..++. .-.+.| ...+.. |+.+-+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhc
Confidence 344556678888888888888888876543 222333 333344 666666555554
No 333
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.05 E-value=4.8e+02 Score=23.44 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=35.4
Q ss_pred HHHHHH---hCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCC
Q 039792 634 MICTNA---HHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGL 678 (819)
Q Consensus 634 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 678 (819)
+|+++. +..+.+.|+-.+-+|++.| .|..+.-..++.+...-|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 455554 4578999999999999999 8877877888888888776
No 334
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=20.02 E-value=53 Score=16.82 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=13.9
Q ss_pred CCCchHHHHHHHHHHhC
Q 039792 746 NSMWADAKQVRKKMDLD 762 (819)
Q Consensus 746 ~g~~~~a~~~~~~m~~~ 762 (819)
.++|++|..++.+|.++
T Consensus 3 mnrydqaatlrakmekr 19 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKR 19 (26)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 46889999999999754
Done!