BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039794
         (234 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9ZCS5|SECY_RICPR Protein translocase subunit SecY OS=Rickettsia prowazekii (strain
           Madrid E) GN=secY PE=3 SV=1
          Length = 433

 Score = 32.3 bits (72), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 167 WPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNN 218
           +P+  A+F  + S +MS++ +YL +G PV   LY + + F + F    + N+
Sbjct: 281 FPTTLASFSNSNSDTMSMLTYYLGHGKPVYILLYVVLIMFFSFFYTAIVFNS 332


>sp|A5GP57|HRCA_SYNPW Heat-inducible transcription repressor HrcA OS=Synechococcus sp.
           (strain WH7803) GN=hrcA PE=3 SV=1
          Length = 331

 Score = 32.3 bits (72), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 20  LESSALLVNPCPSSGRTAESAEYK-------PLPGKQTRNLQKVTILENIRWKELGFL 70
           LE   LLV P PS+GR      Y+       P PG    +L++     ++RW  L  L
Sbjct: 51  LEQKGLLVQPHPSAGRIPSPRGYRHYVDCLLPKPGAAVHHLEQELTQLSLRWAALDDL 108


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,420,514
Number of Sequences: 539616
Number of extensions: 3387362
Number of successful extensions: 9550
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9549
Number of HSP's gapped (non-prelim): 3
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)