Query 039794
Match_columns 234
No_of_seqs 244 out of 659
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 13:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01925 TauE: Sulfite exporte 99.3 7.1E-12 1.5E-16 108.4 9.7 90 140-229 131-230 (240)
2 PRK10621 hypothetical protein; 99.2 8.7E-11 1.9E-15 104.7 11.9 91 138-228 143-239 (266)
3 COG0730 Predicted permeases [G 99.2 1.8E-10 3.9E-15 101.7 12.7 91 138-228 142-239 (258)
4 COG0730 Predicted permeases [G 99.0 1.4E-09 3.1E-14 96.0 7.2 86 140-225 13-103 (258)
5 PRK10621 hypothetical protein; 98.9 2.2E-09 4.8E-14 95.7 7.6 83 141-224 19-106 (266)
6 PF01925 TauE: Sulfite exporte 98.4 4E-07 8.6E-12 78.7 5.4 85 139-223 3-91 (240)
7 PF04018 DUF368: Domain of unk 73.1 21 0.00046 32.3 8.2 75 136-226 140-219 (257)
8 COG1346 LrgB Putative effector 71.0 34 0.00074 30.6 8.8 62 150-219 102-171 (230)
9 PF04066 MrpF_PhaF: Multiple r 70.6 22 0.00048 24.3 6.1 54 165-218 2-55 (55)
10 PF10999 DUF2839: Protein of u 66.2 9 0.0002 28.0 3.5 24 59-82 40-63 (68)
11 PRK04288 antiholin-like protei 59.6 98 0.0021 27.7 9.6 30 190-219 145-174 (232)
12 PRK10711 hypothetical protein; 59.4 81 0.0017 28.2 9.0 30 190-219 140-169 (231)
13 PF11169 DUF2956: Protein of u 57.3 26 0.00056 27.6 4.8 17 61-80 84-100 (103)
14 PF04172 LrgB: LrgB-like famil 56.6 1.2E+02 0.0025 26.8 9.5 30 190-219 129-158 (215)
15 COG1968 BacA Undecaprenyl pyro 53.3 1.3E+02 0.0029 27.5 9.5 78 154-231 170-252 (270)
16 COG2035 Predicted membrane pro 50.6 70 0.0015 29.4 7.2 70 136-223 144-218 (276)
17 PF14990 DUF4516: Domain of un 49.6 38 0.00083 23.0 4.1 30 191-220 3-32 (47)
18 PF02990 EMP70: Endomembrane p 48.8 57 0.0012 32.2 6.9 40 180-219 285-324 (521)
19 PF11044 TMEMspv1-c74-12: Plec 45.0 40 0.00087 22.8 3.6 30 94-123 3-32 (49)
20 PRK12600 putative monovalent c 43.9 1.1E+02 0.0024 23.5 6.4 54 164-217 30-83 (94)
21 PF02673 BacA: Bacitracin resi 38.9 2.9E+02 0.0064 24.8 10.2 90 141-230 147-250 (259)
22 PRK12612 putative monovalent c 38.2 1.6E+02 0.0035 22.1 6.5 53 164-216 30-82 (87)
23 COG3086 RseC Positive regulato 37.9 1.5E+02 0.0032 24.9 6.7 66 159-225 65-130 (150)
24 PF11947 DUF3464: Protein of u 37.6 80 0.0017 26.5 5.1 50 101-158 70-119 (153)
25 PRK12599 putative monovalent c 37.4 1.7E+02 0.0036 22.3 6.5 54 164-217 32-85 (91)
26 TIGR02185 Trep_Strep conserved 36.2 53 0.0012 28.0 4.0 30 194-223 157-186 (189)
27 PRK11469 hypothetical protein; 35.8 2.8E+02 0.006 23.7 12.7 19 61-79 30-48 (188)
28 PRK12604 putative monovalent c 35.5 1.8E+02 0.0038 21.9 6.3 54 164-217 28-81 (84)
29 PRK08381 putative monovalent c 35.2 1.9E+02 0.0042 21.8 6.5 53 164-216 31-83 (87)
30 PRK06161 putative monovalent c 34.2 1.8E+02 0.004 21.9 6.3 53 164-216 30-82 (89)
31 COG1284 Uncharacterized conser 32.5 1E+02 0.0022 28.4 5.4 34 194-231 177-210 (289)
32 PRK12657 putative monovalent c 32.2 2.1E+02 0.0045 22.3 6.4 54 164-217 34-87 (100)
33 PRK10245 adrA diguanylate cycl 31.1 2.7E+02 0.0058 25.9 8.1 54 43-100 17-70 (366)
34 PF12273 RCR: Chitin synthesis 30.7 42 0.0009 26.7 2.3 6 95-100 2-7 (130)
35 PF07698 7TM-7TMR_HD: 7TM rece 30.0 1.3E+02 0.0028 25.0 5.3 49 163-223 80-128 (194)
36 PHA03029 hypothetical protein; 29.4 1.8E+02 0.004 21.8 5.3 43 67-109 21-70 (92)
37 PRK10578 hypothetical protein; 29.1 1.1E+02 0.0024 26.8 4.9 21 150-170 38-60 (207)
38 TIGR00659 conserved hypothetic 29.0 4.2E+02 0.009 23.6 10.2 30 190-219 139-168 (226)
39 PF14851 FAM176: FAM176 family 28.3 1.5E+02 0.0033 24.8 5.4 35 175-211 2-36 (153)
40 PF13347 MFS_2: MFS/sugar tran 27.6 4.9E+02 0.011 23.9 13.6 31 199-229 263-293 (428)
41 PF09605 Trep_Strep: Hypotheti 26.7 3.9E+02 0.0085 22.6 12.9 31 193-223 153-183 (186)
42 KOG1582 UDP-galactose transpor 25.5 1.2E+02 0.0025 28.5 4.5 49 61-112 38-93 (367)
43 PF13829 DUF4191: Domain of un 25.3 2.2E+02 0.0049 25.4 6.1 47 60-111 25-71 (224)
44 COG0580 GlpF Glycerol uptake f 25.1 1.6E+02 0.0034 26.5 5.2 35 185-219 73-107 (241)
45 PF00230 MIP: Major intrinsic 24.5 1.9E+02 0.004 24.7 5.5 37 186-222 80-116 (227)
46 PRK12603 putative monovalent c 24.3 3.2E+02 0.0069 20.7 6.7 53 164-216 27-80 (86)
47 PRK07948 putative monovalent c 23.7 3.2E+02 0.007 20.5 6.0 52 164-215 29-80 (86)
48 PRK01844 hypothetical protein; 22.9 1.9E+02 0.0041 21.4 4.4 24 202-225 11-34 (72)
49 PRK14212 camphor resistance pr 22.7 2.2E+02 0.0049 22.8 5.2 34 194-227 95-128 (128)
50 PF01864 DUF46: Putative integ 22.2 3.4E+02 0.0075 23.1 6.5 29 197-225 90-118 (175)
51 PF01148 CTP_transf_1: Cytidyl 22.1 3.7E+02 0.0079 22.8 6.9 64 160-223 158-223 (259)
52 PF03189 Otopetrin: Otopetrin; 21.6 4.7E+02 0.01 25.4 8.1 36 67-102 246-281 (441)
53 PF12263 DUF3611: Protein of u 21.4 5.3E+02 0.011 22.2 8.9 25 92-119 58-82 (183)
54 PLN00182 putative aquaporin NI 21.2 2E+02 0.0043 26.4 5.1 33 188-220 110-142 (283)
55 TIGR02840 spore_YtaF putative 20.9 2.4E+02 0.0052 24.3 5.4 43 185-227 147-191 (206)
56 PRK14231 camphor resistance pr 20.7 2.7E+02 0.0059 22.3 5.4 28 199-226 100-128 (129)
57 PF02659 DUF204: Domain of unk 20.5 3E+02 0.0065 19.0 5.4 31 194-224 22-52 (67)
58 PRK15385 magnesium transport p 20.4 5.5E+02 0.012 22.8 7.7 41 144-186 61-101 (225)
59 PRK00523 hypothetical protein; 20.3 2.3E+02 0.005 20.9 4.3 22 204-225 14-35 (72)
60 PF12597 DUF3767: Protein of u 20.2 42 0.0009 26.9 0.5 18 164-181 64-81 (118)
No 1
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.33 E-value=7.1e-12 Score=108.40 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=79.6
Q ss_pred HHHH-HHHhhhhhccCccEE-----E-EcCCCChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHH---HHHHHHHHH
Q 039794 140 QWCA-CGIVAGLLGIDADSL-----W-DLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALY---FIAVAFIAA 209 (234)
Q Consensus 140 ~~~~-~G~laGLlGIGGG~i-----l-~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~---~~~~~~~ga 209 (234)
.+.+ .|+++|++|+|||.+ . ..|.+||++.||+.+++++++.++...|+..|.+|++...+ ...++++|+
T Consensus 131 ~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~ 210 (240)
T PF01925_consen 131 LGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGDVDWPMLLLSLILLPGAFLGA 210 (240)
T ss_pred hhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 4455 999999999999986 2 36999999999999999999999999999999999997776 899999999
Q ss_pred HHHHHHHHHhhHhhCceeEE
Q 039794 210 FTGTYIMNNMIDKTGRKSLI 229 (234)
Q Consensus 210 ~~G~~~~~~l~~k~gR~SiI 229 (234)
.+|+++.+|+.++.-|+.+.
T Consensus 211 ~lG~~~~~~i~~~~~~~~~~ 230 (240)
T PF01925_consen 211 FLGAKLARKIPQKVFRRIFL 230 (240)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 99999999998877665443
No 2
>PRK10621 hypothetical protein; Provisional
Probab=99.24 E-value=8.7e-11 Score=104.73 Aligned_cols=91 Identities=18% Similarity=0.053 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhhhhccCccEE------EEcCCCChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 039794 138 LAQWCACGIVAGLLGIDADSL------WDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFT 211 (234)
Q Consensus 138 l~~~~~~G~laGLlGIGGG~i------l~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~ 211 (234)
...+...|+++|++|+|||.+ ...|.|+++|.+||+++.++++..+...|...|.+|+..++.+..++++|+.+
T Consensus 143 ~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~v~~~~~l~l~~g~~~G~~l 222 (266)
T PRK10621 143 LIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGKVIWATGFVMLVGQFLGARL 222 (266)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHHHHHHHH
Confidence 345778899999999999987 34699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhhCceeE
Q 039794 212 GTYIMNNMIDKTGRKSL 228 (234)
Q Consensus 212 G~~~~~~l~~k~gR~Si 228 (234)
|+++.+|+.++.-|+-+
T Consensus 223 G~~l~~~~~~~~lr~~~ 239 (266)
T PRK10621 223 GARLVLSKGQKLIRPMI 239 (266)
T ss_pred HHHHHHHcCchHhHHHH
Confidence 99999999887766543
No 3
>COG0730 Predicted permeases [General function prediction only]
Probab=99.21 E-value=1.8e-10 Score=101.74 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhhhhccCccEE------EEcCCCChhhhhhhHHHHHHhhhHHHHHHHh-cCCCchhHHHHHHHHHHHHHH
Q 039794 138 LAQWCACGIVAGLLGIDADSL------WDLYSWSSWPSAAATFGMTFSPSMSVVEFYL-PNGFPVPYALYFIAVAFIAAF 210 (234)
Q Consensus 138 l~~~~~~G~laGLlGIGGG~i------l~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~-~g~~~~~~al~~~~~~~~ga~ 210 (234)
......+|+++|++|+|||.. +..+.|.+.+++||++.++++++.+...|.. .|++++..+..+.+++++|+.
T Consensus 142 ~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G~~ 221 (258)
T COG0730 142 LLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILGAY 221 (258)
T ss_pred HHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 345667999999999999876 5568899999999999999999999999999 799999998889999999999
Q ss_pred HHHHHHHHhhHhhCceeE
Q 039794 211 TGTYIMNNMIDKTGRKSL 228 (234)
Q Consensus 211 ~G~~~~~~l~~k~gR~Si 228 (234)
+|+++.+|+.++.-|.-+
T Consensus 222 lG~~l~~~~~~~~lr~~~ 239 (258)
T COG0730 222 LGARLARRLSPKVLRRLF 239 (258)
T ss_pred HHHHHHHhcCHHHHHHHH
Confidence 999999999877766543
No 4
>COG0730 Predicted permeases [General function prediction only]
Probab=98.96 E-value=1.4e-09 Score=96.01 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=77.5
Q ss_pred HHHHHHHhhhhhccCccEE-----EEcCCCChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 039794 140 QWCACGIVAGLLGIDADSL-----WDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTY 214 (234)
Q Consensus 140 ~~~~~G~laGLlGIGGG~i-----l~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~ 214 (234)
.+.++|++.|++|+|||++ +.+++||+.|.+|+...+.+++..+...|+..|++|++.+..+..++++|+++|+.
T Consensus 13 ~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G~~lG~~ 92 (258)
T COG0730 13 VGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIGAFLGAL 92 (258)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778999999999 55779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHhhCc
Q 039794 215 IMNNMIDKTGR 225 (234)
Q Consensus 215 ~~~~l~~k~gR 225 (234)
+..++.+..-+
T Consensus 93 l~~~~~~~~l~ 103 (258)
T COG0730 93 LALLLPAELLK 103 (258)
T ss_pred HHHhCCHHHHH
Confidence 99888766544
No 5
>PRK10621 hypothetical protein; Provisional
Probab=98.94 E-value=2.2e-09 Score=95.72 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=74.8
Q ss_pred HHHHHHhhhhhccCccEE-----EEcCCCChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 039794 141 WCACGIVAGLLGIDADSL-----WDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYI 215 (234)
Q Consensus 141 ~~~~G~laGLlGIGGG~i-----l~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~ 215 (234)
..++|+++|+.| |||++ +.+|+||++|.+||.+.+.+++.+++..|...+++|++....+.+++++|+.+|..+
T Consensus 19 g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~Ga~~G~~l 97 (266)
T PRK10621 19 AMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFVGSMSGALL 97 (266)
T ss_pred HHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999 99999 446999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhhC
Q 039794 216 MNNMIDKTG 224 (234)
Q Consensus 216 ~~~l~~k~g 224 (234)
++.++++.-
T Consensus 98 ~~~l~~~~l 106 (266)
T PRK10621 98 VQYVQADIL 106 (266)
T ss_pred HHhCCHHHH
Confidence 988776543
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=98.40 E-value=4e-07 Score=78.71 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=75.6
Q ss_pred HHHHHHHHhhhhhccCccEE----EEcCCCChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 039794 139 AQWCACGIVAGLLGIDADSL----WDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTY 214 (234)
Q Consensus 139 ~~~~~~G~laGLlGIGGG~i----l~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~ 214 (234)
+...++|++.|+.|.|||.+ +.+.+||++|.+|+.....+++..++..|...+++||+....+..++++|+.+|..
T Consensus 3 ~~~~~ag~v~g~~G~g~g~i~~p~l~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~iG~~ 82 (240)
T PF01925_consen 3 LIGFLAGFVSGITGFGGGLIAVPILILFLPPKQAVATSLFINLFTSLIAALRHRKHGNIDWKIVLPLIIGALIGVVIGAW 82 (240)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhHhHHHHHHHHh
Confidence 34567889999999999999 33337999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHhh
Q 039794 215 IMNNMIDKT 223 (234)
Q Consensus 215 ~~~~l~~k~ 223 (234)
+...+.++.
T Consensus 83 l~~~l~~~~ 91 (240)
T PF01925_consen 83 LLSLLPDDI 91 (240)
T ss_pred hhcchhHHH
Confidence 988776653
No 7
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=73.10 E-value=21 Score=32.31 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHhhh----hhccCccEE-EEcCCCChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 039794 136 QQLAQWCACGIVAG----LLGIDADSL-WDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAF 210 (234)
Q Consensus 136 ~~l~~~~~~G~laG----LlGIGGG~i-l~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~ 210 (234)
.+.....++|++|+ +=|+.|.++ +.+|.=..+-.|-+.+.- -++..-..+++++.+|-.
T Consensus 140 ~~~~~lf~~G~ia~~AMIlPGiSGS~iLlilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~Gi~ 203 (257)
T PF04018_consen 140 PSYLYLFLAGAIAACAMILPGISGSFILLILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIGIL 203 (257)
T ss_pred chHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHHHH
Confidence 34455566676666 446666665 445543333332222211 377888899999999999
Q ss_pred HHHHHHHHhhHhhCce
Q 039794 211 TGTYIMNNMIDKTGRK 226 (234)
Q Consensus 211 ~G~~~~~~l~~k~gR~ 226 (234)
.-+++++++-+|+.++
T Consensus 204 ~~skll~~ll~~~~~~ 219 (257)
T PF04018_consen 204 LFSKLLSYLLKRYRSQ 219 (257)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888764
No 8
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=71.03 E-value=34 Score=30.61 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=41.1
Q ss_pred hhccCccEE--EEcCCCChhh------hhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 150 LLGIDADSL--WDLYSWSSWP------SAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 150 LlGIGGG~i--l~~Gi~p~vA------~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
+.++.-+.+ ..+|.+++.. +.|+-+.|-.|. ..|..|--.+......+++|+.+|..+.+.+
T Consensus 102 ~~ai~s~~llak~~g~~~~~~~Sl~PkSvTTpiAm~vs~--------~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 102 VVAIISGVLLAKLFGLSPELILSLLPKSVTTPIAMEVSE--------SIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhcccccccHHHHHHHH--------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334 3456666543 445555544443 3567888888888999999999999998876
No 9
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=70.63 E-value=22 Score=24.34 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=43.1
Q ss_pred ChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 039794 165 SSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNN 218 (234)
Q Consensus 165 p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~ 218 (234)
|....|..++.............+.....-.+.++.++..+|+|+..-++..+|
T Consensus 2 ~DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~r 55 (55)
T PF04066_consen 2 ADRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLER 55 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455667777777777777888888887888899999999999999887776553
No 10
>PF10999 DUF2839: Protein of unknown function (DUF2839); InterPro: IPR021262 This bacterial family of unknown function appear to be restricted to Cyanobacteria.
Probab=66.17 E-value=9 Score=27.98 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=19.8
Q ss_pred hcccchhhHHHHHHHHHHHHHHHH
Q 039794 59 LENIRWKELGFLSFIRLAYLVPQI 82 (234)
Q Consensus 59 ~~~~~w~~l~~L~~vw~~~l~~~i 82 (234)
--+.+|.-++++++.|+++..+-.
T Consensus 40 ttkg~w~gig~l~~~wi~vrfiGp 63 (68)
T PF10999_consen 40 TTKGPWIGIGILVLIWIIVRFIGP 63 (68)
T ss_pred hhcccchhHHHHHHHHHHHHhhcc
Confidence 348899999999999999887643
No 11
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=59.62 E-value=98 Score=27.71 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=23.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 190 PNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 190 ~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
.|..|--.+....+.+++|+.+|-.+.+.+
T Consensus 145 iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 145 IGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456676777778888999999999988865
No 12
>PRK10711 hypothetical protein; Provisional
Probab=59.41 E-value=81 Score=28.21 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=23.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 190 PNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 190 ~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
.|..|--.+....+.+++|+.+|..+.+.+
T Consensus 140 iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 140 IGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345666677777888999999999988865
No 13
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=57.27 E-value=26 Score=27.59 Aligned_cols=17 Identities=12% Similarity=0.456 Sum_probs=14.4
Q ss_pred ccchhhHHHHHHHHHHHHHH
Q 039794 61 NIRWKELGFLSFIRLAYLVP 80 (234)
Q Consensus 61 ~~~w~~l~~L~~vw~~~l~~ 80 (234)
.+||. +|++.|+.|.+-
T Consensus 84 ~LPW~---LL~lSW~gF~~Y 100 (103)
T PF11169_consen 84 WLPWG---LLVLSWIGFIAY 100 (103)
T ss_pred chhHH---HHHHHHHHHHHH
Confidence 67887 999999999874
No 14
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=56.62 E-value=1.2e+02 Score=26.79 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=22.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 190 PNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 190 ~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
.|..|--.+....+.+++|+.+|-.+.+++
T Consensus 129 iGG~~sLta~~VvitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 129 IGGIPSLTAVFVVITGILGAVLGPPLLKLL 158 (215)
T ss_pred hCChHHHHHHHHHHHhhHHHHhHHHHHhHc
Confidence 345555566677778899999998888875
No 15
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=53.28 E-value=1.3e+02 Score=27.48 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=44.4
Q ss_pred CccEE---EEcCCCChhhhhhhHHHHHHhhhHH-HHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH-HHHhhHhhCceeE
Q 039794 154 DADSL---WDLYSWSSWPSAAATFGMTFSPSMS-VVEFYLPNGFPVPYALYFIAVAFIAAFTGTYI-MNNMIDKTGRKSL 228 (234)
Q Consensus 154 GGG~i---l~~Gi~p~vA~aTS~~~i~ftS~~s-~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~-~~~l~~k~gR~Si 228 (234)
.|..| +.+|.+.+.|+==|-++-.++-..+ ....+..+...-.........+++.|++-+.+ ++.+.+-.+|.++
T Consensus 170 SGaTI~~~lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~AFvv~~~~I~~ll~~i~~~~~ 249 (270)
T COG1968 170 SGATISGGLLLGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKFLLRFIKRHSF 249 (270)
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34445 6789999888888888877777443 34555553332223333344445544444443 3344555566666
Q ss_pred EEE
Q 039794 229 ITF 231 (234)
Q Consensus 229 IVf 231 (234)
..|
T Consensus 250 ~~F 252 (270)
T COG1968 250 IPF 252 (270)
T ss_pred eeh
Confidence 655
No 16
>COG2035 Predicted membrane protein [Function unknown]
Probab=50.56 E-value=70 Score=29.42 Aligned_cols=70 Identities=23% Similarity=0.141 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhhh----hhccCccEE-EEcCCCChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 039794 136 QQLAQWCACGIVAG----LLGIDADSL-WDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAF 210 (234)
Q Consensus 136 ~~l~~~~~~G~laG----LlGIGGG~i-l~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~ 210 (234)
..++...++|.+|. +=|+.|-++ |.+|+=+.+-.+-| ...++..-..+.+++..|=.
T Consensus 144 ~~~i~~~~aGavAa~AMilPGiSGS~lLLllG~Y~~vl~~ls------------------s~~~l~~l~~f~~G~~~Gll 205 (276)
T COG2035 144 GYLILLFIAGAVAACAMILPGISGSFLLLLLGVYAPVLSALS------------------SFFILGTLLPFAIGAGAGLL 205 (276)
T ss_pred chHHHHHHHHHHHHHHHhCCCCcHHHHHHHHhhHHHHHHHHH------------------hhhhHHHHHHHHHHHHHHHH
Confidence 46666777788887 568888888 66676555544444 13334455566666666666
Q ss_pred HHHHHHHHhhHhh
Q 039794 211 TGTYIMNNMIDKT 223 (234)
Q Consensus 211 ~G~~~~~~l~~k~ 223 (234)
.-+++.+++-+++
T Consensus 206 ~fskvi~y~L~~h 218 (276)
T COG2035 206 TFSKVISYLLRNH 218 (276)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665554
No 17
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=49.64 E-value=38 Score=23.00 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=26.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 191 NGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 191 g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
+.++|+.-+.+...++.+-+.|+.++|++-
T Consensus 3 ~Gv~~~~yl~~~~~s~~sM~aGA~vVH~~y 32 (47)
T PF14990_consen 3 AGVSWPSYLKSLVASLLSMLAGASVVHNIY 32 (47)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 458888889999999999999999999873
No 18
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=48.82 E-value=57 Score=32.17 Aligned_cols=40 Identities=8% Similarity=0.223 Sum_probs=21.9
Q ss_pred hhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 180 PSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 180 S~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
+..+...+...|.+--...+.+++.+++++++++++-+.+
T Consensus 285 a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~ 324 (521)
T PF02990_consen 285 AALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSF 324 (521)
T ss_pred HHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4444444444455444455555666666666666655554
No 19
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=45.03 E-value=40 Score=22.77 Aligned_cols=30 Identities=17% Similarity=0.472 Sum_probs=23.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhhchhh
Q 039794 94 YQVLNSLHVPVSVGVFPYEAIGLYEGLRVI 123 (234)
Q Consensus 94 YWlL~~l~ip~~~~vt~~~a~~l~~~~~~~ 123 (234)
-|+-+.+.+.+.+++++|.....|.+-++.
T Consensus 3 ~wlt~iFsvvIil~If~~iGl~IyQkikqI 32 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFAWIGLSIYQKIKQI 32 (49)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888899988888777655444
No 20
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=43.87 E-value=1.1e+02 Score=23.46 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=43.1
Q ss_pred CChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 039794 164 WSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMN 217 (234)
Q Consensus 164 ~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~ 217 (234)
.|+...|..++.....+.......+.....-.+.++.++..+|+|+..=++...
T Consensus 30 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl~ 83 (94)
T PRK12600 30 LADRVVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFIE 83 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888877788888887777777789999999999999887666554
No 21
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=38.86 E-value=2.9e+02 Score=24.84 Aligned_cols=90 Identities=12% Similarity=0.025 Sum_probs=52.5
Q ss_pred HHHHHHhhh---hhccCccEE-----EEcCCCChhhhhhhHHHHHHhhhHHHH-HHHhcCC--C---chhHHHHHHHHHH
Q 039794 141 WCACGIVAG---LLGIDADSL-----WDLYSWSSWPSAAATFGMTFSPSMSVV-EFYLPNG--F---PVPYALYFIAVAF 206 (234)
Q Consensus 141 ~~~~G~laG---LlGIGGG~i-----l~~Gi~p~vA~aTS~~~i~ftS~~s~~-~~~~~g~--~---~~~~al~~~~~~~ 206 (234)
...+|+.-| +=|+.-.-. +..|++++.|.-=|-++-.+....+.+ +.....+ . ++...+.-++.++
T Consensus 147 al~iGl~Q~lAl~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~af 226 (259)
T PF02673_consen 147 ALIIGLAQGLALIPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAF 226 (259)
T ss_pred HHHHHHHHHcccCCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHH
Confidence 344555555 445433222 778999999999988888887766655 3332222 2 2333333344556
Q ss_pred HHHHHHHHHHHHhhHhhCceeEEE
Q 039794 207 IAAFTGTYIMNNMIDKTGRKSLIT 230 (234)
Q Consensus 207 ~ga~~G~~~~~~l~~k~gR~SiIV 230 (234)
+.+++.-+...|+.+|.+...+.+
T Consensus 227 v~g~l~i~~ll~~~~~~~~~~F~~ 250 (259)
T PF02673_consen 227 VVGYLAIKWLLRFLKRRKLRPFAI 250 (259)
T ss_pred HHHHHHHHHHHHHHhhCCceeehh
Confidence 666666666666666665554443
No 22
>PRK12612 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=38.21 E-value=1.6e+02 Score=22.10 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=40.1
Q ss_pred CChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 039794 164 WSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIM 216 (234)
Q Consensus 164 ~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~ 216 (234)
.|....|..++.............+.....-.+.++.++..+|+|+..=++..
T Consensus 30 ~~DRvvalD~l~~~~v~~l~~~~~~~~~~~~~dvalvlall~FvgTva~Ar~l 82 (87)
T PRK12612 30 ILTRLVISDMVFYAMALILLCLGLYNGTSIYYDIALAAGLLGFLGTIAYARII 82 (87)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777767778899999998888887766654
No 23
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=37.93 E-value=1.5e+02 Score=24.94 Aligned_cols=66 Identities=15% Similarity=-0.000 Sum_probs=38.3
Q ss_pred EEcCCCChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhHhhCc
Q 039794 159 WDLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDKTGR 225 (234)
Q Consensus 159 l~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~~k~gR 225 (234)
.++|++-+----.++.+.++==..-.+..++..++-... .+-++++++|..+|=.+++++.+|++.
T Consensus 65 VeiGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e-~~~~~~~~lg~~l~fl~~r~ysRkl~~ 130 (150)
T COG3086 65 VELGIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSE-LIVIFGAFLGLALGFLLARRYSRKLAK 130 (150)
T ss_pred EEEccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 557777665555555555443333333333322222211 344556777888888888888888877
No 24
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=37.61 E-value=80 Score=26.54 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHhhhchhhcccCccccccchhhHHHHHHHHHhhhhhccCccEE
Q 039794 101 HVPVSVGVFPYEAIGLYEGLRVIASKGEESRNCSLQQLAQWCACGIVAGLLGIDADSL 158 (234)
Q Consensus 101 ~ip~~~~vt~~~a~~l~~~~~~~~~~g~~~~~~~~~~l~~~~~~G~laGLlGIGGG~i 158 (234)
-+|.++++..+.+++..+.+. ..+......+...+.-|..|++||.=|++
T Consensus 70 GiP~~lG~~~f~~~y~l~~~~--------~~dvP~~~~~~~S~~~Fg~gllGisYGil 119 (153)
T PF11947_consen 70 GIPTALGVAVFVVFYYLKSRQ--------IVDVPPWAVLLVSLVFFGLGLLGISYGIL 119 (153)
T ss_pred chHHHHHHHHHHHHHHHHhcc--------ccccCchHHHHHHHHHHHHHHHhhhhhhc
Confidence 367778888777777665442 11222223334445667778999988877
No 25
>PRK12599 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=37.44 E-value=1.7e+02 Score=22.26 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=42.1
Q ss_pred CChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 039794 164 WSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMN 217 (234)
Q Consensus 164 ~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~ 217 (234)
.|+...|..++.............+.....-.+.++.++..+|+|+..=++...
T Consensus 32 ~~DRvvAld~~~~~~v~~i~lla~~~~~~~~~dvalvlall~Fvgtva~Aryl~ 85 (91)
T PRK12599 32 LPDRVVALDTLNTITVGIIAVLAAATGRPLYLDIAIVYALLSFLGTVAIAKYLV 85 (91)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888887777778788887777777789999999999998876655443
No 26
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=36.19 E-value=53 Score=28.05 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 039794 194 PVPYALYFIAVAFIAAFTGTYIMNNMIDKT 223 (234)
Q Consensus 194 ~~~~al~~~~~~~~ga~~G~~~~~~l~~k~ 223 (234)
+........+.+++++++|+.+.+|+.+|+
T Consensus 157 ~~~~~~~~~~~t~v~~~iG~~iG~kllkKH 186 (189)
T TIGR02185 157 SAIWAVIMIVLTAVAGIAGVLIGKKLLKKH 186 (189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556667788889999999999988775
No 27
>PRK11469 hypothetical protein; Provisional
Probab=35.82 E-value=2.8e+02 Score=23.68 Aligned_cols=19 Identities=16% Similarity=-0.078 Sum_probs=9.5
Q ss_pred ccchhhHHHHHHHHHHHHH
Q 039794 61 NIRWKELGFLSFIRLAYLV 79 (234)
Q Consensus 61 ~~~w~~l~~L~~vw~~~l~ 79 (234)
+.+|++.....++.-.+..
T Consensus 30 ~~~~~~~~~~~l~~g~~q~ 48 (188)
T PRK11469 30 KPKFSEALRTGLIFGAVET 48 (188)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5666664444444333333
No 28
>PRK12604 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=35.53 E-value=1.8e+02 Score=21.87 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=42.9
Q ss_pred CChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 039794 164 WSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMN 217 (234)
Q Consensus 164 ~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~ 217 (234)
.|+...|..+......+.......+.....-.+.++.++..+|+|+..=++...
T Consensus 28 ~~DRvvAlD~l~~~~v~~i~l~a~~~~~~~~ldvalvlAll~Fv~tva~Aryl~ 81 (84)
T PRK12604 28 TVDRLVAVDIMTTITTGLMVLFALYYKRMIFLDVALVYAILAFVGVIAFARYLE 81 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888887777777789999999999999887665543
No 29
>PRK08381 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=35.17 E-value=1.9e+02 Score=21.85 Aligned_cols=53 Identities=8% Similarity=0.083 Sum_probs=42.1
Q ss_pred CChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 039794 164 WSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIM 216 (234)
Q Consensus 164 ~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~ 216 (234)
.|+...|.........+.......+.....-.+.++.++..+|+++..=++..
T Consensus 31 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalv~All~Fv~tva~Ary~ 83 (87)
T PRK08381 31 LADRIVGLNTITTKVVGIIAILSVLWEEYYLLDLAIVLLMVNAVGGLILAKYM 83 (87)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888777778888888888877778999999999999887665543
No 30
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=34.16 E-value=1.8e+02 Score=21.94 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=38.2
Q ss_pred CChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 039794 164 WSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIM 216 (234)
Q Consensus 164 ~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~ 216 (234)
.|+...|...+.....+.......+.....-.+.++.++..+|+|+..=++..
T Consensus 30 ~~DRvvA~D~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fl~tva~AR~~ 82 (89)
T PRK06161 30 AQDRILALDTLYINAILLLLVFGIRLGSTIYFEAALLIALLGFVSTVALAKFL 82 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777666667777777677666678888999888888877655543
No 31
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=32.48 E-value=1e+02 Score=28.38 Aligned_cols=34 Identities=15% Similarity=0.430 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHhhCceeEEEE
Q 039794 194 PVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKSLITF 231 (234)
Q Consensus 194 ~~~~al~~~~~~~~ga~~G~~~~~~l~~k~gR~SiIVf 231 (234)
+++.++ -++++.++..++.+.+.+++++....+.
T Consensus 177 ~~~~~l----ytli~~~i~~~vid~v~~g~~~~k~~~i 210 (289)
T COG1284 177 PLPNAL----YTLLSLFVASKVIDIVQEGLNSSKVVII 210 (289)
T ss_pred hHHHHH----HHHHHHHHHHHHHHHHHccccceEEEEE
Confidence 455444 4566777888888888887777665554
No 32
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=32.19 E-value=2.1e+02 Score=22.27 Aligned_cols=54 Identities=6% Similarity=0.040 Sum_probs=41.4
Q ss_pred CChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 039794 164 WSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMN 217 (234)
Q Consensus 164 ~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~ 217 (234)
.|....|-.++.....+.......+.....-.+.++.++..+|+|+..=++...
T Consensus 34 ~~DRivAlD~l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~tva~ARyl~ 87 (100)
T PRK12657 34 TADRVVTFDTTSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIG 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777777777789999999999999888776654
No 33
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=31.13 E-value=2.7e+02 Score=25.91 Aligned_cols=54 Identities=11% Similarity=0.026 Sum_probs=32.0
Q ss_pred cCCCCCccchhhhhhhhcccchhhHHHHHHHHHHHHHHHHhhhcccCCChhHHHHHHh
Q 039794 43 KPLPGKQTRNLQKVTILENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSL 100 (234)
Q Consensus 43 ~~l~~~~~~~~~~~~~~~~~~w~~l~~L~~vw~~~l~~~ilkg~i~~Cs~~YWlL~~l 100 (234)
.|++...+.+.+.-+.-+|+++-+..-+.++++...+...- ..-..+.|++.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~r~~~~r~~g~~~~~~~~~~~~~~----~~~~~~~~~~l~~ 70 (366)
T PRK10245 17 PPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVS----HPPPGWWWLLLVG 70 (366)
T ss_pred CCCcchhhhccccchhHHHHHHHHHHHHHHhHHHHHHHHHh----cccchHHHHHHHH
Confidence 34443333323334456799999999888887766665332 3335666766543
No 34
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.72 E-value=42 Score=26.74 Aligned_cols=6 Identities=33% Similarity=0.307 Sum_probs=2.9
Q ss_pred HHHHHh
Q 039794 95 QVLNSL 100 (234)
Q Consensus 95 WlL~~l 100 (234)
|++.++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 455444
No 35
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=29.99 E-value=1.3e+02 Score=25.05 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 039794 163 SWSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDKT 223 (234)
Q Consensus 163 i~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~~k~ 223 (234)
++++.|..++.+.-++.+.+. ..|.+..+ ..++++.+|.+.++|..+|.
T Consensus 80 ~~~~~ai~~~~~~sl~~~~~~--------~~~~~~~~----~~l~~~~~~~~~~~~~~~R~ 128 (194)
T PF07698_consen 80 IDPRLAILASLFLSLLASLLF--------GFDFEFFL----YSLVSGIVAIFSVRRIRSRS 128 (194)
T ss_pred hcchHHHHHHHHHHHHHHHHh--------cccHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 577888877777666655532 33444433 44555666666666665543
No 36
>PHA03029 hypothetical protein; Provisional
Probab=29.42 E-value=1.8e+02 Score=21.81 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccc-----CCChhHHHHHHh--hHHHHHHHH
Q 039794 67 LGFLSFIRLAYLVPQIAKNHTA-----TFSSAYQVLNSL--HVPVSVGVF 109 (234)
Q Consensus 67 l~~L~~vw~~~l~~~ilkg~i~-----~Cs~~YWlL~~l--~ip~~~~vt 109 (234)
+....++|--.+.++=.|..++ .--.+||.+|.+ .+|.++...
T Consensus 21 la~igiiwg~llsi~k~raai~qnirsrrkg~ywflnf~fwllp~al~a~ 70 (92)
T PHA03029 21 LAIIGIIWGFLLSINKIRAAIDQNIRSRRKGLYWFLNFLFWLLPFALAAA 70 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888887777632 335789999976 356555443
No 37
>PRK10578 hypothetical protein; Provisional
Probab=29.05 E-value=1.1e+02 Score=26.80 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=14.0
Q ss_pred hhccCccEE--EEcCCCChhhhh
Q 039794 150 LLGIDADSL--WDLYSWSSWPSA 170 (234)
Q Consensus 150 LlGIGGG~i--l~~Gi~p~vA~a 170 (234)
+.++|||++ +.+|-+|.....
T Consensus 38 vTa~GGG~iRDill~~~P~~~~~ 60 (207)
T PRK10578 38 VTAVGGGTIRDMALDNGPVFWVK 60 (207)
T ss_pred HHHhhcHHHHHHHcCCCCceeec
Confidence 567899999 667765544333
No 38
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=29.01 E-value=4.2e+02 Score=23.62 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=23.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 190 PNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 190 ~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
.|..|--.+....+.|++|+.+|..+.+.+
T Consensus 139 iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 139 IGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566667777778999999999888876
No 39
>PF14851 FAM176: FAM176 family
Probab=28.35 E-value=1.5e+02 Score=24.83 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=25.2
Q ss_pred HHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 039794 175 GMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFT 211 (234)
Q Consensus 175 ~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~ 211 (234)
|.++|.+..+..|+... |=.+|+||+.+-.+|=++
T Consensus 2 m~llSnsLaaya~I~~~--PE~~aLYFv~gVC~GLlL 36 (153)
T PF14851_consen 2 MELLSNSLAAYAHIRDN--PERFALYFVSGVCAGLLL 36 (153)
T ss_pred chHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHH
Confidence 67888888998888764 667778877665555433
No 40
>PF13347 MFS_2: MFS/sugar transport protein
Probab=27.60 E-value=4.9e+02 Score=23.94 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhCceeEE
Q 039794 199 LYFIAVAFIAAFTGTYIMNNMIDKTGRKSLI 229 (234)
Q Consensus 199 l~~~~~~~~ga~~G~~~~~~l~~k~gR~SiI 229 (234)
-.+.....+++.++.-+..++.+|+||+...
T Consensus 263 ~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~ 293 (428)
T PF13347_consen 263 SIFMLIFFVASIVGSPLWGRLSKRFGKKKVY 293 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccceeeh
Confidence 3444455666777777777777777776643
No 41
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=26.72 E-value=3.9e+02 Score=22.58 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=24.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 039794 193 FPVPYALYFIAVAFIAAFTGTYIMNNMIDKT 223 (234)
Q Consensus 193 ~~~~~al~~~~~~~~ga~~G~~~~~~l~~k~ 223 (234)
.+.+..+...+.+++++.+|..+.+|+.+|+
T Consensus 153 ~~~~~~~~~~~~~~v~a~lG~~lG~kllkKH 183 (186)
T PF09605_consen 153 FTPWMLIIIIIITFVGALLGALLGKKLLKKH 183 (186)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666777788889999999999987775
No 42
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=25.53 E-value=1.2e+02 Score=28.50 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=31.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhc-------ccCCChhHHHHHHhhHHHHHHHHHHH
Q 039794 61 NIRWKELGFLSFIRLAYLVPQIAKNH-------TATFSSAYQVLNSLHVPVSVGVFPYE 112 (234)
Q Consensus 61 ~~~w~~l~~L~~vw~~~l~~~ilkg~-------i~~Cs~~YWlL~~l~ip~~~~vt~~~ 112 (234)
.-.|....++..- ++...+.-|+ ...-++-=|-+++.|.-+-.++.+.+
T Consensus 38 kpkw~QFlic~~g---~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie 93 (367)
T KOG1582|consen 38 KPKWTQFLICSAG---VFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIE 93 (367)
T ss_pred CchhhhHHHHHhH---HHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheE
Confidence 4568876665543 6666677665 34445556999999986665544443
No 43
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=25.32 E-value=2.2e+02 Score=25.37 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=31.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhhcccCCChhHHHHHHhhHHHHHHHHHH
Q 039794 60 ENIRWKELGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHVPVSVGVFPY 111 (234)
Q Consensus 60 ~~~~w~~l~~L~~vw~~~l~~~ilkg~i~~Cs~~YWlL~~l~ip~~~~vt~~ 111 (234)
..++|--++.++.+-++++++-++-+ +.+||++..+.+-+.+++..+
T Consensus 25 p~l~~~ml~a~l~~~~v~v~ig~l~~-----~~~~~~i~gi~~g~l~am~vl 71 (224)
T PF13829_consen 25 PKLPWLMLGAFLGPIAVFVLIGLLFG-----SWWYWLIIGILLGLLAAMIVL 71 (224)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHc-----cHHHHHHHHHHHHHHHHHHHH
Confidence 46777777766666666777666633 788999888766555544433
No 44
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=25.06 E-value=1.6e+02 Score=26.53 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=30.7
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 185 VEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 185 ~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
+..+..|++||...+.+.+.=++|+++|+.++.-+
T Consensus 73 i~la~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~ 107 (241)
T COG0580 73 IALAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLL 107 (241)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999887754
No 45
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=24.51 E-value=1.9e+02 Score=24.73 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=31.7
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 039794 186 EFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDK 222 (234)
Q Consensus 186 ~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~~k 222 (234)
.....|++++..++.+.+.=++|+++|+.+++.+.+.
T Consensus 80 a~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 116 (227)
T PF00230_consen 80 AFALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPD 116 (227)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred heeeeeeecccceeeEEeeccccccccccchhhcccC
Confidence 3456799999999999999999999999998877544
No 46
>PRK12603 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=24.27 E-value=3.2e+02 Score=20.67 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=39.4
Q ss_pred CChhhhhhhHHHHHHhhhHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHH
Q 039794 164 WSSWPSAAATFGMTFSPSMSVVEFYLPNGF-PVPYALYFIAVAFIAAFTGTYIM 216 (234)
Q Consensus 164 ~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~-~~~~al~~~~~~~~ga~~G~~~~ 216 (234)
.|+...|..++.....+......++..... -.+.++.++..+|+++..=++..
T Consensus 27 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~~lDvaLvlAll~Fv~tva~Aryl 80 (86)
T PRK12603 27 IYDKILAANLFGTYSVVLIVVLGVINDAQSLFIDVSLVYACIGLVSAIGFMKFF 80 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777777665543 48999999999999887665544
No 47
>PRK07948 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=23.72 E-value=3.2e+02 Score=20.54 Aligned_cols=52 Identities=8% Similarity=-0.064 Sum_probs=36.6
Q ss_pred CChhhhhhhHHHHHHhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 039794 164 WSSWPSAAATFGMTFSPSMSVVEFYLPNGFPVPYALYFIAVAFIAAFTGTYI 215 (234)
Q Consensus 164 ~p~vA~aTS~~~i~ftS~~s~~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~ 215 (234)
.|+...|--++.....+.............-.+.++.++..+|+++..=++.
T Consensus 29 ~~DRvvAlD~l~~~~v~~l~l~~~~~~~~~~ldvalvlAll~Fv~tva~Ary 80 (86)
T PRK07948 29 SLDRLVALDTLVAVTMCALATWAAWTLDTTVTNAMTALALIGFIGSVSVARF 80 (86)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666656665666788899999999888766554
No 48
>PRK01844 hypothetical protein; Provisional
Probab=22.89 E-value=1.9e+02 Score=21.36 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhCc
Q 039794 202 IAVAFIAAFTGTYIMNNMIDKTGR 225 (234)
Q Consensus 202 ~~~~~~ga~~G~~~~~~l~~k~gR 225 (234)
.++-++|.++|-+++++..+|+-+
T Consensus 11 I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 11 VVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777888888777643
No 49
>PRK14212 camphor resistance protein CrcB; Provisional
Probab=22.66 E-value=2.2e+02 Score=22.76 Aligned_cols=34 Identities=9% Similarity=-0.044 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHhhCcee
Q 039794 194 PVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKS 227 (234)
Q Consensus 194 ~~~~al~~~~~~~~ga~~G~~~~~~l~~k~gR~S 227 (234)
++..++.+....++++++...+-..+.++.+|+|
T Consensus 95 ~~~~a~~y~~~s~~~gl~a~~lG~~l~~~~~~~~ 128 (128)
T PRK14212 95 DYFNGFSNILANVLLGLLMVFIGAYLGSLLKQNS 128 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4555555554444444444443344444444443
No 50
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=22.25 E-value=3.4e+02 Score=23.13 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhCc
Q 039794 197 YALYFIAVAFIAAFTGTYIMNNMIDKTGR 225 (234)
Q Consensus 197 ~al~~~~~~~~ga~~G~~~~~~l~~k~gR 225 (234)
.+..+++++++|=..|+.+=||+--+-|+
T Consensus 90 ~g~ll~~gamlGDl~~SFIKRRlgi~~G~ 118 (175)
T PF01864_consen 90 LGFLLGLGAMLGDLPGSFIKRRLGIPRGA 118 (175)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCCCC
Confidence 33455555666666666666665443333
No 51
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=22.06 E-value=3.7e+02 Score=22.81 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=44.4
Q ss_pred EcCCCChhhhhhhHHHHHHhhhHHHHHHHhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 039794 160 DLYSWSSWPSAAATFGMTFSPSMSVVEFYLPNG--FPVPYALYFIAVAFIAAFTGTYIMNNMIDKT 223 (234)
Q Consensus 160 ~~Gi~p~vA~aTS~~~i~ftS~~s~~~~~~~g~--~~~~~al~~~~~~~~ga~~G~~~~~~l~~k~ 223 (234)
...+.|+.+..=+..+++.+...+.+.+..... .++...+.+++.+.+.+.+|..+...+.|..
T Consensus 158 ~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~ 223 (259)
T PF01148_consen 158 APKISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGDLFESAIKRDA 223 (259)
T ss_pred CCCCCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678888877777777777766665555544 6777777888878888888887766554443
No 52
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=21.64 E-value=4.7e+02 Score=25.39 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCChhHHHHHHhhH
Q 039794 67 LGFLSFIRLAYLVPQIAKNHTATFSSAYQVLNSLHV 102 (234)
Q Consensus 67 l~~L~~vw~~~l~~~ilkg~i~~Cs~~YWlL~~l~i 102 (234)
++++++.-+++....+++++-+.-..++.+.+...+
T Consensus 246 il~lv~tii~lilf~v~~~~~~~~~~A~~~~~i~~~ 281 (441)
T PF03189_consen 246 ILVLVATIIVLILFFVLINDPEYSELAILLVYIFEL 281 (441)
T ss_pred HHHHHHHHHHhehhhheecCCchhHHHHHHHHHHHH
Confidence 334444444555555555544434455555444433
No 53
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=21.41 E-value=5.3e+02 Score=22.16 Aligned_cols=25 Identities=8% Similarity=0.003 Sum_probs=14.9
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 039794 92 SAYQVLNSLHVPVSVGVFPYEAIGLYEG 119 (234)
Q Consensus 92 ~~YWlL~~l~ip~~~~vt~~~a~~l~~~ 119 (234)
..||....+ ++++++.|..++..|-
T Consensus 58 gl~~a~~gl---~~l~~si~~~fry~Rl 82 (183)
T PF12263_consen 58 GLFLAICGL---VALFFSIFWSFRYTRL 82 (183)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 557766665 3456667776664443
No 54
>PLN00182 putative aquaporin NIP4; Provisional
Probab=21.19 E-value=2e+02 Score=26.37 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=28.7
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 188 YLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 188 ~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
++.|+++|...+.+.++=++|+++|+.+++.+.
T Consensus 110 ~~~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~ 142 (283)
T PLN00182 110 AIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMF 142 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445889999999999999999999998887664
No 55
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=20.95 E-value=2.4e+02 Score=24.34 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=31.0
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhHh--hCcee
Q 039794 185 VEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMIDK--TGRKS 227 (234)
Q Consensus 185 ~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~~k--~gR~S 227 (234)
+.....|.-++...+..++.+++....|.++-+++.++ .||.+
T Consensus 147 ~s~~~~g~~~~~~~~~igivs~i~~~~G~~lG~~~~~~~~~g~~a 191 (206)
T TIGR02840 147 IGASLLGLNPLATSILVAVMSFIFVSLGLFLGKKISKKSIIGKFS 191 (206)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchH
Confidence 34455666666777888888888888888888887666 46654
No 56
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=20.71 E-value=2.7e+02 Score=22.33 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHh-hCce
Q 039794 199 LYFIAVAFIAAFTGTYIMNNMIDK-TGRK 226 (234)
Q Consensus 199 l~~~~~~~~ga~~G~~~~~~l~~k-~gR~ 226 (234)
..-.+.+++++.+|..+.+++.++ .+|+
T Consensus 100 ~~s~~~gl~a~~lG~~l~~~~~~~~~~~~ 128 (129)
T PRK14231 100 LASFIGGLIMVKFGRMLSNKLLNRGEHRV 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 333445777888888888776443 3343
No 57
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=20.53 E-value=3e+02 Score=18.96 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHhhC
Q 039794 194 PVPYALYFIAVAFIAAFTGTYIMNNMIDKTG 224 (234)
Q Consensus 194 ~~~~al~~~~~~~~ga~~G~~~~~~l~~k~g 224 (234)
++..++.+.+..++...+|..+-+++.++.+
T Consensus 22 ~~~~~~~ig~~~~~~~~~G~~~G~~~~~~~~ 52 (67)
T PF02659_consen 22 ILLIALIIGIFQFIMPLLGLLLGRRLGRFIG 52 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776666666666666665555443
No 58
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=20.45 E-value=5.5e+02 Score=22.84 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=23.2
Q ss_pred HHHhhhhhccCccEEEEcCCCChhhhhhhHHHHHHhhhHHHHH
Q 039794 144 CGIVAGLLGIDADSLWDLYSWSSWPSAAATFGMTFSPSMSVVE 186 (234)
Q Consensus 144 ~G~laGLlGIGGG~il~~Gi~p~vA~aTS~~~i~ftS~~s~~~ 186 (234)
.++++|+--+|+|.|+.-+ .++.=-|+...+..|+..++..
T Consensus 61 a~vvsGigFlgaG~I~~~~--~~v~GlTTaAtlw~taaiG~~~ 101 (225)
T PRK15385 61 AQIVSGIGFLGAGVIMREG--MNVRGLNTAATLWCSAGIGVLC 101 (225)
T ss_pred HHHHHHHHHHHheeeeccC--CCCCcHHHHHHHHHHHHHHHHH
Confidence 4556665555667774333 2344556666666666666654
No 59
>PRK00523 hypothetical protein; Provisional
Probab=20.28 E-value=2.3e+02 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhHhhCc
Q 039794 204 VAFIAAFTGTYIMNNMIDKTGR 225 (234)
Q Consensus 204 ~~~~ga~~G~~~~~~l~~k~gR 225 (234)
+-++|.+.|-+++++..+|+-+
T Consensus 14 ~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 14 LLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888777644
No 60
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=20.25 E-value=42 Score=26.85 Aligned_cols=18 Identities=6% Similarity=-0.213 Sum_probs=8.3
Q ss_pred CChhhhhhhHHHHHHhhh
Q 039794 164 WSSWPSAAATFGMTFSPS 181 (234)
Q Consensus 164 ~p~vA~aTS~~~i~ftS~ 181 (234)
+|..|+=-+....+++|+
T Consensus 64 ~~~~A~nwavgsF~l~s~ 81 (118)
T PF12597_consen 64 NPRKAANWAVGSFFLGSL 81 (118)
T ss_pred CCccchhhhhHHHHHHHH
Confidence 565554444443344333
Done!