Query 039794
Match_columns 234
No_of_seqs 244 out of 659
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 23:08:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3llq_A Aquaporin Z 2; aquapori 24.1 1.2E+02 0.004 26.1 5.5 33 188-220 99-131 (256)
2 2o9g_A Aquaporin Z; integral m 21.3 1.5E+02 0.0051 24.8 5.6 35 186-220 72-106 (234)
3 3gd8_A Aquaporin-4; proton exc 21.1 1.5E+02 0.0053 24.6 5.6 33 187-219 73-105 (223)
4 2b6o_A Aquaporin-0, lens fiber 21.0 1.5E+02 0.005 25.4 5.5 34 187-220 75-108 (263)
5 3d9s_A Aquaporin-5, AQP-5; aqu 21.0 1.5E+02 0.005 25.5 5.5 34 186-219 76-109 (266)
6 1j4n_A Aquaporin 1; membrane p 20.8 1.5E+02 0.0051 25.4 5.6 35 186-220 84-118 (271)
7 2w2e_A AQY1, aquaporin, aquapo 20.6 1.5E+02 0.0052 25.6 5.6 35 186-220 118-152 (279)
8 2f2b_A Aquaporin AQPM; protein 19.6 1.7E+02 0.0057 24.6 5.5 35 186-220 88-122 (246)
9 3c02_A Aquaglyceroporin; membr 19.1 1.9E+02 0.0064 24.5 5.8 34 186-219 76-109 (258)
10 3iyz_A Aquaporin-4; water tran 19.1 1.7E+02 0.0058 26.3 5.7 34 187-220 121-154 (340)
No 1
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=24.12 E-value=1.2e+02 Score=26.08 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=29.1
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 188 YLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 188 ~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
+..|++||..+..+.+.=++|+++|+.+++-+-
T Consensus 99 ~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~ 131 (256)
T 3llq_A 99 TVAGRFPASSLVPYVIAQVAGAIVAAAALYVIA 131 (256)
T ss_dssp HHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456899999999999999999999999988653
No 2
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=21.31 E-value=1.5e+02 Score=24.79 Aligned_cols=35 Identities=6% Similarity=0.244 Sum_probs=30.0
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 186 EFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 186 ~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
..+..|++|+.....+.+.=++|+++|+.+++-+-
T Consensus 72 a~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~ 106 (234)
T 2o9g_A 72 GLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA 106 (234)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577899999999999999999999999887653
No 3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=21.10 E-value=1.5e+02 Score=24.56 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=28.9
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 187 FYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 187 ~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
.+..|++|+.....+.+.=++|+++|+.+++-+
T Consensus 73 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 73 MVCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456789999999999999999999999988765
No 4
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=21.03 E-value=1.5e+02 Score=25.37 Aligned_cols=34 Identities=12% Similarity=0.388 Sum_probs=29.7
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 187 FYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 187 ~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
.+..|++++.....+.+.=++|+++|+.+++.+-
T Consensus 75 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~ 108 (263)
T 2b6o_A 75 FLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVT 108 (263)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4466899999999999999999999999988764
No 5
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=21.01 E-value=1.5e+02 Score=25.49 Aligned_cols=34 Identities=18% Similarity=0.435 Sum_probs=29.6
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 186 EFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 186 ~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
..+..|++|+..+..+.+.=++|+++|+.+++-+
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 76 ALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999988865
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=20.84 E-value=1.5e+02 Score=25.45 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 186 EFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 186 ~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
..+..|++|+..+..+.+.=++|+++|+.+++.+-
T Consensus 84 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~ 118 (271)
T 1j4n_A 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118 (271)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567899999999999999999999999988663
No 7
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=20.63 E-value=1.5e+02 Score=25.63 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=30.1
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 186 EFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 186 ~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
..+..|++++..+..+.+.=++|+++|+.+++-+.
T Consensus 118 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~ 152 (279)
T 2w2e_A 118 ALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMT 152 (279)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34577899999999999999999999999888653
No 8
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=19.56 E-value=1.7e+02 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=30.1
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 186 EFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 186 ~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
..+..|++|+..+..+.+.=++|+++|+.+++-+-
T Consensus 88 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~ 122 (246)
T 2f2b_A 88 GLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCA 122 (246)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34577999999999999999999999999888663
No 9
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=19.14 E-value=1.9e+02 Score=24.55 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=29.6
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 186 EFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 186 ~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
..+..|++|+..+..+.+.=++|+++|+.+++-+
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 109 (258)
T 3c02_A 76 GLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGL 109 (258)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999988765
No 10
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=19.13 E-value=1.7e+02 Score=26.30 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=29.3
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 187 FYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 187 ~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
.+..|+++|..++.+.+.=++|+++|+.+++-+.
T Consensus 121 l~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~ 154 (340)
T 3iyz_A 121 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLVT 154 (340)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466899999999999999999999999887664
Done!