Query 039794
Match_columns 234
No_of_seqs 244 out of 659
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 23:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039794.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039794hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ymga1 f.19.1.1 (A:6-239) Aqu 28.3 43 0.0032 25.9 5.6 34 187-220 70-103 (234)
2 d1rc2a_ f.19.1.1 (A:) Aquapori 21.9 57 0.0042 24.8 5.1 34 187-220 70-103 (231)
3 d1j4na_ f.19.1.1 (A:) Aquapori 21.9 67 0.0049 24.9 5.6 36 186-221 84-119 (249)
4 d1fx8a_ f.19.1.1 (A:) Glycerol 21.6 67 0.0049 25.0 5.5 35 185-219 68-102 (254)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 16.2 1.1E+02 0.0083 23.5 5.8 21 206-226 69-89 (447)
6 d1pv7a_ f.38.1.2 (A:) Lactose 14.7 1.6E+02 0.012 21.7 6.2 36 193-228 40-75 (417)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 11.3 2.1E+02 0.015 18.7 5.3 15 132-146 74-88 (100)
8 d1cola_ f.1.1.1 (A:) Colicin A 10.5 2E+02 0.015 22.0 5.4 49 170-221 142-193 (197)
9 d1jb0m_ f.23.19.1 (M:) Subunit 6.9 2E+02 0.015 15.3 3.1 19 5-23 10-28 (31)
10 d1rh1a2 f.1.1.1 (A:313-511) Co 5.9 1.9E+02 0.014 22.2 3.2 15 170-184 144-158 (199)
No 1
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.32 E-value=43 Score=25.90 Aligned_cols=34 Identities=12% Similarity=0.383 Sum_probs=30.4
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 187 FYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 187 ~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
++..|++|+...+.+.+.=++|+++|+.+++.+.
T Consensus 70 ~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~ 103 (234)
T d1ymga1 70 FLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVT 103 (234)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhccCCChhheeeeeehHHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999999988764
No 2
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=21.87 E-value=57 Score=24.81 Aligned_cols=34 Identities=6% Similarity=0.259 Sum_probs=29.8
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039794 187 FYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMI 220 (234)
Q Consensus 187 ~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~ 220 (234)
.+..|++|+..++.+.+.=++|+++|+.+++-+.
T Consensus 70 ~~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~ 103 (231)
T d1rc2a_ 70 LWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA 103 (231)
T ss_dssp HHHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567999999999999999999999999887654
No 3
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.87 E-value=67 Score=24.87 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=31.1
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 039794 186 EFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNMID 221 (234)
Q Consensus 186 ~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l~~ 221 (234)
.++..|++++...+.+.+.=++|+++|+.+++.+..
T Consensus 84 a~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~ 119 (249)
T d1j4na_ 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITS 119 (249)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccccchhheeeeeeHHHHHHHHHHhhheeecc
Confidence 456679999999999999999999999998887643
No 4
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=21.62 E-value=67 Score=24.98 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=29.7
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039794 185 VEFYLPNGFPVPYALYFIAVAFIAAFTGTYIMNNM 219 (234)
Q Consensus 185 ~~~~~~g~~~~~~al~~~~~~~~ga~~G~~~~~~l 219 (234)
+..+..|++|+...+.+.+.=++|+++|+.+++-+
T Consensus 68 la~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (254)
T d1fx8a_ 68 IALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 102 (254)
T ss_dssp HHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999888654
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=16.15 E-value=1.1e+02 Score=23.52 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhHhhCce
Q 039794 206 FIAAFTGTYIMNNMIDKTGRK 226 (234)
Q Consensus 206 ~~ga~~G~~~~~~l~~k~gR~ 226 (234)
.++..+|+.+.-++.||+||+
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g~r 89 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSNPR 89 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHcCch
Confidence 344444444444555555544
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=14.68 E-value=1.6e+02 Score=21.67 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=24.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhHhhCceeE
Q 039794 193 FPVPYALYFIAVAFIAAFTGTYIMNNMIDKTGRKSL 228 (234)
Q Consensus 193 ~~~~~al~~~~~~~~ga~~G~~~~~~l~~k~gR~Si 228 (234)
++....-++.....++..+++.+.-.+.||+||+..
T Consensus 40 ~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~ 75 (417)
T d1pv7a_ 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY 75 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence 444444455556667777888888888888888753
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.26 E-value=2.1e+02 Score=18.74 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=6.8
Q ss_pred ccchhhHHHHHHHHH
Q 039794 132 NCSLQQLAQWCACGI 146 (234)
Q Consensus 132 ~~~~~~l~~~~~~G~ 146 (234)
-|+.-..++....++
T Consensus 74 iWTviP~lILi~l~~ 88 (100)
T d3dtub2 74 AWTIVPIVILVAIGA 88 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355544444444433
No 8
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=10.48 E-value=2e+02 Score=21.99 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=23.8
Q ss_pred hhhHHHHHHhhhHHHHHHHhcCCCc---hhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 039794 170 AAATFGMTFSPSMSVVEFYLPNGFP---VPYALYFIAVAFIAAFTGTYIMNNMID 221 (234)
Q Consensus 170 aTS~~~i~ftS~~s~~~~~~~g~~~---~~~al~~~~~~~~ga~~G~~~~~~l~~ 221 (234)
||+...-+|+++.+++.+.+ .+| +..+.+ .+.+.+++++...++.++-+
T Consensus 142 At~va~~~fs~~~~~~~~~~--g~~~~~iGI~g~-li~~~v~alIdd~~~~~iN~ 193 (197)
T d1cola_ 142 ASSVALGIFSATLGAYALSL--GVPAIAVGIAGI-LLAAVVGALIDDKFADALNN 193 (197)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CSCHHHHHHHHH-HHHHHHHHHHCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc--cccccHHHHHHH-HHHHHHHHHhhHHHHHHHHH
Confidence 44444445555544443222 234 222222 45666677776666665543
No 9
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=6.86 E-value=2e+02 Score=15.33 Aligned_cols=19 Identities=11% Similarity=0.370 Sum_probs=15.8
Q ss_pred HHHHHHHhHHHHHHHHhhH
Q 039794 5 LILAFFFFSEIVTWLLESS 23 (234)
Q Consensus 5 ~~~~~~~~kGv~~Wk~Et~ 23 (234)
+-|+-+..-|+-.||.-|+
T Consensus 10 valvial~pg~lafrlate 28 (31)
T d1jb0m_ 10 VALVIALLPAVLAFRLSTE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567778999999998886
No 10
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.95 E-value=1.9e+02 Score=22.18 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=7.0
Q ss_pred hhhHHHHHHhhhHHH
Q 039794 170 AAATFGMTFSPSMSV 184 (234)
Q Consensus 170 aTS~~~i~ftS~~s~ 184 (234)
||...+.+|+.+.+.
T Consensus 144 At~v~~~~fs~~~g~ 158 (199)
T d1rh1a2 144 ASAVALSLFSLTLGS 158 (199)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH
Confidence 444444455554433
Done!