BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039796
         (66 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana
          GN=At1g08370 PE=1 SV=2
          Length = 367

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 64/66 (96%)

Query: 1  MSQNGKLMPNLDQQSTKLLNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG 60
          MSQNGK++PNLDQ ST+LLNLTVLQ IDP+IEEILITAAHVTFYEFNI+LSQWSRKDVEG
Sbjct: 1  MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEG 60

Query: 61 SLFVVK 66
          SLFVVK
Sbjct: 61 SLFVVK 66


>sp|Q8IZD4|DCP1B_HUMAN mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=2
          Length = 617

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 19 LNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFV 64
          ++L  LQ  DP+I  I+  A+ V  Y F    ++W + DVEG+LFV
Sbjct: 16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFV 61


>sp|Q5R413|DCP1B_PONAB mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1
          Length = 609

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 19 LNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFV 64
          ++L  LQ  DP+I  I+  A+ V  Y F    ++W + DVEG+LFV
Sbjct: 16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFV 61


>sp|Q9P805|DCP1_SCHPO mRNA-decapping enzyme subunit 1 OS=Schizosaccharomyces pombe
          (strain 972 / ATCC 24843) GN=dcp1 PE=1 SV=1
          Length = 127

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 19 LNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66
          +NL VL+   P IE I+  A+HV  Y+F++   +W +  +EG+ F+VK
Sbjct: 11 VNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVK 58


>sp|Q3SZL6|DCP1B_BOVIN mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1
          Length = 581

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 19 LNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFV 64
          ++L  L+  DP+I  I+  A+ V  Y F    ++W + DVEG+LFV
Sbjct: 14 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFV 59


>sp|Q91YD3|DCP1A_MOUSE mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1
          Length = 602

 Score = 41.6 bits (96), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 19 LNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66
          ++L  L+  DP+I  I      V  Y F    +QW + D+EG+LFV +
Sbjct: 31 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR 78


>sp|Q9NPI6|DCP1A_HUMAN mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=2
          Length = 582

 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 19 LNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66
          ++L  L+  DP+I  I      V  Y F    +QW + D+EG+LFV +
Sbjct: 11 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR 58


>sp|Q3U564|DCP1B_MOUSE mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b PE=2 SV=1
          Length = 578

 Score = 39.7 bits (91), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 19 LNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFV 64
          ++L  L+  DP+I  I+  A+ V  Y F    ++W +  VEG+LFV
Sbjct: 16 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFV 61


>sp|Q12517|DCP1_YEAST mRNA-decapping enzyme subunit 1 OS=Saccharomyces cerevisiae
          (strain ATCC 204508 / S288c) GN=DCP1 PE=1 SV=1
          Length = 231

 Score = 34.3 bits (77), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 27/48 (56%)

Query: 17 KLLNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFV 64
          K LN  V+   DP I+++L    H + Y+++    +W++ + +G L +
Sbjct: 20 KALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAI 67


>sp|Q74Z05|DCP1_ASHGO mRNA-decapping enzyme subunit 1 OS=Ashbya gossypii (strain ATCC
          10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DCP1
          PE=3 SV=1
          Length = 193

 Score = 33.9 bits (76), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 17 KLLNLTVLQLIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFV 64
          K LN  V+   DP I+++L    H T Y++    ++W++ + +G L +
Sbjct: 17 KTLNFNVIGRYDPKIKQLLFHTPHATVYKWEAGENKWNKLEYQGVLAI 64


>sp|A8AY51|EZRA_STRGC Septation ring formation regulator EzrA OS=Streptococcus gordonii
          (strain Challis / ATCC 35105 / CH1 / DL1 / V288)
          GN=ezrA PE=3 SV=1
          Length = 574

 Score = 32.7 bits (73), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 3  QNGKLMPNLDQQSTKLLNLTVLQLIDPFIEEILITAAHVTFYEFN---IDLSQWSRKDVE 59
          +N  L+ +L+++  KL NL V   ++      LI  + VTF E+N   +DLS  S  D+E
Sbjct: 29 RNETLLDSLEERKEKLYNLPVNDEVEAIKNMHLIGQSQVTFREWNQKWVDLSLNSFADIE 88

Query: 60 GSLF 63
           ++F
Sbjct: 89 NNIF 92


>sp|A3CMA0|EZRA_STRSV Septation ring formation regulator EzrA OS=Streptococcus
          sanguinis (strain SK36) GN=ezrA PE=3 SV=1
          Length = 574

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 3  QNGKLMPNLDQQSTKLLNLTVLQLIDPFIEEILITAAHVTFYEFN---IDLSQWSRKDVE 59
          +N  L+ NL+++   L NL V   ++      LI  + V F E+N   +DLS  S  D+E
Sbjct: 29 RNEALLQNLEERKEALYNLPVNDEVEEVKNMHLIGQSQVAFREWNQKWVDLSLNSFADIE 88

Query: 60 GSLF 63
           +LF
Sbjct: 89 NNLF 92


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,004,583
Number of Sequences: 539616
Number of extensions: 657832
Number of successful extensions: 1311
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 15
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)